BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase
RuvA [Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040230|gb|ACT57026.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score =  421 bits (1081), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL
Sbjct: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI
Sbjct: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA
Sbjct: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           VVSVLKKEKNIADDSQIIRLALRAISC
Sbjct: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207


>gi|315122880|ref|YP_004063369.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496282|gb|ADR52881.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 208

 Score =  350 bits (899), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 167/208 (80%), Positives = 194/208 (93%), Gaps = 1/208 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKIKGNIEGLYEDYVLIDVQG+CYI+YCPIRTLSCLGKIGDFCTLFVETH+RQDQIRL
Sbjct: 1   MIGKIKGNIEGLYEDYVLIDVQGICYIVYCPIRTLSCLGKIGDFCTLFVETHVRQDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLSDL+R+WF+LLQSVQGVGARVAMGVLSRIT  ELV+SIILQN+K++AQIPGI  K+
Sbjct: 61  FGFLSDLERKWFVLLQSVQGVGARVAMGVLSRITPVELVDSIILQNNKILAQIPGIGAKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179
           ++RIM ELKGKA+SLSS  ++++SC+N E++++C SM S AI+AISALVNLGYGQDQAT 
Sbjct: 121 SNRIMIELKGKAVSLSSSEKKEISCLNGEKSNVCESMSSSAIDAISALVNLGYGQDQATV 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AVVS+LKKEKNI DDSQIIRLALR ++C
Sbjct: 181 AVVSILKKEKNITDDSQIIRLALREMTC 208


>gi|222086988|ref|YP_002545522.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84]
 gi|254766935|sp|B9J9J0|RUVA_AGRRK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221724436|gb|ACM27592.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84]
          Length = 204

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG IE + EDY L+DV GVCY+ YC  RTLS LG +G+ C LF+ET++R+DQIRL
Sbjct: 1   MIGKLKGTIEEIGEDYALVDVHGVCYVAYCSARTLSRLGSVGEACILFIETYVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQ+VQGVGA+VA+ +LS +T +EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMAVLEREWFNLLQTVQGVGAKVALALLSTLTPSELANAIALQDRTAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  + +    +  +   K++      P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRIVTELKNKVPAFAG---EATNIGFKQELGEGVAPAPVSDAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + +K   + AD +++IRL L+ +S
Sbjct: 178 IAAAMKVAGDEADSAKLIRLGLKELS 203


>gi|163758803|ref|ZP_02165890.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica
           DFL-43]
 gi|162284093|gb|EDQ34377.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica
           DFL-43]
          Length = 205

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 141/206 (68%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG IE + ED+VLIDV GVCY+ +C  RTLS LG  G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIEEIDEDHVLIDVHGVCYVAFCSSRTLSRLGSAGEAAVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+R+WF LLQSVQGVGA+VA+ VLS +T +EL  +I LQ+  ++A+ PGI  K+
Sbjct: 61  FGFETALEREWFRLLQSVQGVGAKVALAVLSTLTTSELANAIALQDKAMVARAPGIGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +LS      M    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 AQRIVAELKNKAPALSGDAGSTMGLKQELGEGVASAP--IADAVSALCNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     AD +++IRL L+ ++
Sbjct: 179 VAAAMKTAGEDADSAKLIRLGLKELA 204


>gi|332716453|ref|YP_004443919.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium
           sp. H13-3]
 gi|325063138|gb|ADY66828.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium
           sp. H13-3]
          Length = 205

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG IE +  DYVL+DV GVCY+ YC  RTLS +G  G+   LF+ET++R+DQ+RL
Sbjct: 1   MIGKLKGTIEEIGTDYVLVDVHGVCYVAYCSARTLSKIGSAGEAVVLFIETYVREDQLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQSVQGVG++VA+ VLS ++ +EL  +I LQ+  +I++ PG+  K+
Sbjct: 61  FGFLSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKVMISRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TEL+ KA + +      +    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRLVTELRNKAPAFAGEASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL LR +S
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLRELS 204


>gi|15891225|ref|NP_356897.1| Holliday junction DNA helicase motor protein [Agrobacterium
           tumefaciens str. C58]
 gi|22001979|sp|Q8U9K5|RUVA_AGRT5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15159588|gb|AAK89682.1| Holliday junction DNA helicase RuvA [Agrobacterium tumefaciens str.
           C58]
          Length = 205

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG+IE +  DYVL+DV GVCY+ YC  RTLS +G +G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGSIEEIGADYVLVDVHGVCYVAYCSARTLSKIGSVGEAVVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S L+R+WF LLQSVQGVG++VA+ VLS ++ +EL  +I LQ+  +I++ PGI  K+
Sbjct: 61  FGFVSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKTMISRAPGIGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TEL+ KA + +      +    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRLVTELRNKAPAFAGDASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL L+ +S
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204


>gi|222149652|ref|YP_002550609.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4]
 gi|254766936|sp|B9JRI6|RUVA_AGRVS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221736634|gb|ACM37597.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4]
          Length = 205

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + +D+VL+DV GVCY+ +C  RTL+ LG  G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGDDHVLVDVHGVCYVAHCSSRTLARLGSPGEAIVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S L+R+WF LLQSVQGVGA+VA+ +L+ +T +EL  +I LQ+   IA+ PG+  K+
Sbjct: 61  FGFMSALEREWFNLLQSVQGVGAKVALAILATLTPSELANAIALQDKPAIARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK KA + +      +    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 ALRLVTELKNKAPAFTGDAGSAIGLKQELGEGVASAP--VSDAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + LK     AD +++IRL L+ +S
Sbjct: 179 IAAALKNGGEGADSAKLIRLGLKELS 204


>gi|150397836|ref|YP_001328303.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419]
 gi|166200266|sp|A6UCT8|RUVA_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150029351|gb|ABR61468.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419]
          Length = 205

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+V++DV GV Y+ +C  RTL+ LG+ G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLAKLGRAGEAAVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T  EL  +I LQ+   I++ PG+  K+
Sbjct: 61  FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA +    +   +    +    + + P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRIVTELKNKAPAFVGEMAPSIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK     AD +++IRL L+ +S
Sbjct: 179 VAAALKNGGEGADSARLIRLGLKELS 204


>gi|227823320|ref|YP_002827292.1| Holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234]
 gi|254767382|sp|C3MIH6|RUVA_RHISN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|227342321|gb|ACP26539.1| holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234]
          Length = 205

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+V++DV GV Y+ YC  RTL+ LG  G+   LF+ET++R+DQ+RL
Sbjct: 1   MIGKLKGTIDEIGEDFVVLDVHGVGYVAYCSARTLAKLGSAGEAAVLFIETYVREDQLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQ+VQGVG++VA+ +L+ +T  EL  +I LQ+   +A+ PG+  K+
Sbjct: 61  FGFLSALEREWFRLLQTVQGVGSKVALALLTTLTPGELANAIALQDKTSVARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +  +   +    +    + + P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRIVTELKNKAPAFAGEMSASIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL L+ ++
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELA 204


>gi|86359072|ref|YP_470964.1| Holliday junction DNA helicase motor protein [Rhizobium etli CFN
           42]
 gi|123751944|sp|Q2K4J9|RUVA_RHIEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|86283174|gb|ABC92237.1| holliday junction DNA helicase protein [Rhizobium etli CFN 42]
          Length = 204

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 143/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DVQGVCY+ YC  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K +       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGEGADSAKLIRLGLKELA 203


>gi|299134170|ref|ZP_07027363.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2]
 gi|298590917|gb|EFI51119.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2]
          Length = 205

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 141/209 (67%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y++ C  RTL  L   G+   L +ET++R+DQIRL
Sbjct: 1   MIGKLKGLIDSYGEDYVVLDVQGVGYLVSCSARTLQALPSPGEAAVLSIETYVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VLS +  ++L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+TELK KA + +SV   V    S V+ ++A     P    +AISALVNLGYGQ QA
Sbjct: 121 AERIVTELKDKAPAFASVDPAVVHLASAVDDDRA-----PGPVRDAISALVNLGYGQPQA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ S  +     A+ +++IRL L+ ++
Sbjct: 176 AAAIASASRDAGEGAETTKLIRLGLKELA 204


>gi|190893294|ref|YP_001979836.1| holliday junction DNA helicase [Rhizobium etli CIAT 652]
 gi|229560121|sp|B3PYZ4|RUVA_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190698573|gb|ACE92658.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 204

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 145/206 (70%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T +EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPSELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203


>gi|241206204|ref|YP_002977300.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860094|gb|ACS57761.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 204

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRTAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDNADSAKLIRLGLKELA 203


>gi|327194147|gb|EGE61017.1| holliday junction DNA helicase protein [Rhizobium etli CNPAF512]
          Length = 204

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203


>gi|209886413|ref|YP_002290270.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans
           OM5]
 gi|226698735|sp|B6JIZ6|RUVA_OLICO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209874609|gb|ACI94405.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans
           OM5]
          Length = 205

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 142/209 (67%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y+++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGVIDSYGEDYVILDVQGVGYLVHCATRTLQALPSSGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VLS +  ++L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+TELK KA + ++V   V      V+ ++A     P    +AISALVNLGYGQ QA
Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDDRA-----PRPVKDAISALVNLGYGQPQA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ SV +     A+ +Q+IRL L+ ++
Sbjct: 176 AAAIASVARDAGEGAETAQLIRLGLKELA 204


>gi|218671058|ref|ZP_03520729.1| Holliday junction DNA helicase RuvA [Rhizobium etli GR56]
          Length = 197

 Score =  184 bits (466), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 139/200 (69%), Gaps = 3/200 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ YC  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRL 200
           V + +K     AD +++IRL
Sbjct: 178 VAAAMKTAGEGADSAKLIRL 197


>gi|115526757|ref|YP_783668.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           BisA53]
 gi|122294484|sp|Q07H96|RUVA_RHOP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115520704|gb|ABJ08688.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris BisA53]
          Length = 205

 Score =  184 bits (466), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 97/212 (45%), Positives = 140/212 (66%), Gaps = 14/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L + G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDYVILDVQGVGYQVHCASRTLQALPQAGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS +  ++L ++I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDLEREWFRLLQTVQGVGAKVALSVLSTLPPSDLADAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC------SMPSFAINAISALVNLGYGQ 174
           A RI+TELK KA   +S        V+   AH+       S P    +AISALVNLGYGQ
Sbjct: 121 AERIVTELKDKAPGFAS--------VDPAVAHLSGAIEERSAPRPVADAISALVNLGYGQ 172

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            QA  A+ +  +   + A  +Q+I+L L+ +S
Sbjct: 173 PQAAAAIAAAARSAGDAAQTAQLIKLGLKELS 204


>gi|209550796|ref|YP_002282713.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226698736|sp|B5ZP79|RUVA_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209536552|gb|ACI56487.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 204

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG   + C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSADEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDDADSAKLIRLGLKELA 203


>gi|92118982|ref|YP_578711.1| Holliday junction DNA helicase RuvA [Nitrobacter hamburgensis X14]
 gi|91801876|gb|ABE64251.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter
           hamburgensis X14]
          Length = 206

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 136/207 (65%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G    L +ET++R+DQI+L
Sbjct: 2   MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGAAAVLSIETYVREDQIKL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+WF LLQ+VQGVGARVA+ VL  ++  +L  +I L++   +A+ PG+  K+
Sbjct: 62  YGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLANAIALRDKASVARTPGVGPKV 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+TELK KA + ++V   D + V+   A      P    +AISALVNLGYGQ QAT 
Sbjct: 122 AERIVTELKDKAPAFANV---DPAVVHLAGAIDDARAPRPVRDAISALVNLGYGQPQATA 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+    +   + A+ +Q+IRL L+ ++
Sbjct: 179 AIAVASRSAGDDAETAQLIRLGLKELA 205


>gi|116253728|ref|YP_769566.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|122988385|sp|Q1MC53|RUVA_RHIL3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115258376|emb|CAK09479.1| putative Holliday junction DNA helicase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 204

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSTGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +   EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLPPGELANAIALQDRTAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIGLKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + +K     AD +++IRL L+ ++
Sbjct: 178 IAAAMKTAGEGADSAKLIRLGLKELA 203


>gi|90426276|ref|YP_534646.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           BisB18]
 gi|122995259|sp|Q20X09|RUVA_RHOPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90108290|gb|ABD90327.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris BisB18]
          Length = 205

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/207 (47%), Positives = 137/207 (66%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L + G    L +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDYVILDVQGVGYQVHCSARTLQALPQAGGAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS +   +L  +I L++   +A+  G+  K+
Sbjct: 61  FGFRSDLEREWFRLLQTVQGVGAKVALAVLSTLPPADLANAIALRDKAAVARTSGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+TELK KA + +SV   D + V    A    S P    +AISALVNLGYGQ QA  
Sbjct: 121 AERIVTELKDKAPAFASV---DPAVVALSGALDERSAPRPVTDAISALVNLGYGQPQAAA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ S  +     A+ +Q+I+L L+ +S
Sbjct: 178 AIASASRSAGEGAETAQLIKLGLKELS 204


>gi|304393330|ref|ZP_07375258.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130]
 gi|303294337|gb|EFL88709.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130]
          Length = 205

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 131/208 (62%), Gaps = 4/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DVQGV Y ++C  RT+  L   G+   L +ETH+R+ +I+L
Sbjct: 1   MIGKLKGTVDSFGEDWVILDVQGVGYQVHCSTRTMGTLPAAGEAAQLAIETHVRETEIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +DL+R WF LLQ+VQGVGARVA+ +L  +T  E+  +I LQ+   +A+ PG+  K+
Sbjct: 61  YGFTADLERNWFRLLQNVQGVGARVALAILGTLTPGEIASAIALQDKATVARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A RI+ ELK KA +LS         +  +Q       S A+ +A+SAL NLGY   QA+ 
Sbjct: 121 AQRIVAELKDKAPALSG---DATGTIGLQQELGAGAASSAVQDAVSALTNLGYSSQQASA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AV   L K  + A  + +IR+ L+ +S 
Sbjct: 178 AVKLALDKAGDDAPSATLIRMGLKELSS 205


>gi|192289700|ref|YP_001990305.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           TIE-1]
 gi|229560122|sp|B3QHS2|RUVA_RHOPT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|192283449|gb|ACE99829.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           TIE-1]
          Length = 205

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 136/207 (65%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+TELK K  +LS+V   D + V    A      P    +AISALVNLGYGQ QA  
Sbjct: 121 AERIVTELKDKVPALSAV---DPAVVKLSGAIDDNRAPRAVTDAISALVNLGYGQPQAAA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV +  +     A+ +Q+I+L L+ +S
Sbjct: 178 AVATASRTAGEDAETAQLIKLGLKELS 204


>gi|254504698|ref|ZP_05116849.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11]
 gi|222440769|gb|EEE47448.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11]
          Length = 205

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQALPRAGEAAVLFIETIVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R+WF +L +VQGVGA+VA+G+L  + A+E+  +I L +   I++ PG+  ++
Sbjct: 61  YGFAAEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKATISRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK KA  L+S+ Q  ++       ++ + P     A+SAL NLGYGQ QA+ A
Sbjct: 121 AERILSELKDKAPGLASIDQDTIAVSQTVADNVAARP--VAEAVSALTNLGYGQPQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   ++     A    +IRL L+ ++
Sbjct: 179 VAKAMQSAGEDATTETLIRLGLKELA 204


>gi|39934175|ref|NP_946451.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           CGA009]
 gi|81563776|sp|Q6NAT0|RUVA_RHOPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|39648023|emb|CAE26543.1| RuvA; Holliday branch migration protein [Rhodopseudomonas palustris
           CGA009]
          Length = 205

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 136/207 (65%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+TELK K  +LS+V   D + V    A      P    +AISALVNLGYGQ QA  
Sbjct: 121 AERIVTELKDKVPALSAV---DPAVVKLSGAIDDNRAPRAVADAISALVNLGYGQPQAAA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV +  +     A+ +Q+I+L L+ +S
Sbjct: 178 AVATASRTAGEDAETAQLIKLGLKELS 204


>gi|15966503|ref|NP_386856.1| Holliday junction DNA helicase motor protein [Sinorhizobium
           meliloti 1021]
 gi|307300460|ref|ZP_07580240.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C]
 gi|307318325|ref|ZP_07597760.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83]
 gi|20455253|sp|Q92M91|RUVA_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15075774|emb|CAC47329.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti
           1021]
 gi|306896007|gb|EFN26758.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83]
 gi|306904626|gb|EFN35210.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C]
          Length = 205

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 138/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+V++DV GV Y+ +C  RTL  LG  G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLGKLGSAGEAAVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T  EL  +I LQ+   I++ PG+  K+
Sbjct: 61  FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + S  +   +    K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AVRIVTELKNKAPAFSGEMAPSIGL--KQELGEGVAAAPVADAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL L+ +S
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204


>gi|146338241|ref|YP_001203289.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. ORS278]
 gi|166230522|sp|A4YMC6|RUVA_BRASO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146191047|emb|CAL75052.1| Holliday junction DNA helicase ruvA [Bradyrhizobium sp. ORS278]
          Length = 205

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 136/207 (65%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK++G I+   ED+V+IDV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLRGLIDSYAEDFVIIDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VL  +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLGNAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+TELK KA + ++V   D   V    A      P    +AISAL+NLGYGQ QA  
Sbjct: 121 AERIVTELKDKAPAFANV---DPGVVRLSGAIEESRAPQPVADAISALINLGYGQPQAAA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +  +   + A+ +Q+IRL L+ ++
Sbjct: 178 AIAAASRAAGDKAETAQLIRLGLKELA 204


>gi|148258116|ref|YP_001242701.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. BTAi1]
 gi|166230521|sp|A5ERK1|RUVA_BRASB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146410289|gb|ABQ38795.1| Holliday junction DNA helicase subunit RuvA [Bradyrhizobium sp.
           BTAi1]
          Length = 205

 Score =  177 bits (449), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/207 (43%), Positives = 135/207 (65%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYAEDFVILDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VL  +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+TELK KA + + V   D   +    A      P    +AISAL+NLGYGQ QA  
Sbjct: 121 AERIVTELKDKAPAFADV---DPGVIRLSGAIEDSRAPQPIADAISALINLGYGQPQAAA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +  +   + A+ +Q+IRL L+ ++
Sbjct: 178 AIAAASRAAGDKAETAQLIRLGLKELA 204


>gi|316932642|ref|YP_004107624.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           DX-1]
 gi|315600356|gb|ADU42891.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           DX-1]
          Length = 205

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 136/207 (65%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGVIDSYGEDYVILDVHGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+TELK K  +LS+V   D + V+   A    + P    +AISALVNLGYGQ QA  
Sbjct: 121 AERIVTELKDKVPALSNV---DPAVVHLSGAIDDNTAPRAVADAISALVNLGYGQPQAAA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV +  +     A  +Q+I+L L+ +S
Sbjct: 178 AVAAASRSAGEDAATAQLIKLGLKELS 204


>gi|85714394|ref|ZP_01045382.1| Holliday junction DNA helicase motor protein [Nitrobacter sp.
           Nb-311A]
 gi|85698841|gb|EAQ36710.1| Holliday junction DNA helicase motor protein [Nitrobacter sp.
           Nb-311A]
          Length = 205

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/209 (45%), Positives = 138/209 (66%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQSVQGVGARVA+ VL  ++  +L  ++ L++   +A+ PG+  K+
Sbjct: 61  FGFRTDHEREWFRLLQSVQGVGARVALAVLGTLSPADLASAVALRDKASVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+TELK KA S ++V   V   +  V+  +A     P    +AISALVNLGYGQ QA
Sbjct: 121 AERIVTELKDKAPSFANVDPAVVHLVGAVDDRRA-----PGPVTDAISALVNLGYGQPQA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           T A+ +  +     A+ +Q+IRL L+ ++
Sbjct: 176 TAAIAAAARGAGENAETAQLIRLGLKELA 204


>gi|75676909|ref|YP_319330.1| Holliday junction DNA helicase motor protein [Nitrobacter
           winogradskyi Nb-255]
 gi|90135442|sp|Q3SP13|RUVA_NITWN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|74421779|gb|ABA05978.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter
           winogradskyi Nb-255]
          Length = 205

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/212 (45%), Positives = 136/212 (64%), Gaps = 14/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G    L +ET++R+DQI+L
Sbjct: 1   MIGKLKGVIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGQAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQGVGARVA+ VL  ++  +L  +I L++   +A+ PGI  K+
Sbjct: 61  FGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLASAIALRDKASVARTPGIGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS------MPSFAINAISALVNLGYGQ 174
           A RI+TELK KA S ++V   D + V     H+         P    +AISALVNLGYGQ
Sbjct: 121 AERIVTELKDKAPSFANV---DPTVV-----HLAGDLDDQRAPRPVRDAISALVNLGYGQ 172

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            QAT A+ +  +     A+ +Q+IRL L+ +S
Sbjct: 173 PQATAAIAAASRGAGENAETAQLIRLGLKELS 204


>gi|154246996|ref|YP_001417954.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus
           Py2]
 gi|229560140|sp|A7IJV4|RUVA_XANP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154161081|gb|ABS68297.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus
           Py2]
          Length = 205

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ L ED+V++DV GV Y+++C  RTLS L + G+   LF+ETH+R+DQIRL
Sbjct: 1   MIGKLKGVVDTLEEDHVILDVHGVGYLVHCSGRTLSALPRAGEAAALFIETHVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R WF LLQ +QG+G + A+ VLS ++A+EL ++I L +   +A+ PG+  ++
Sbjct: 61  FGFSSAAERDWFRLLQGIQGIGTKTALAVLSTLSASELTQAIALGDKTTVARAPGVGPRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+TELK K    S+   + ++          +    A +A+SALVNLGYG  QA  A
Sbjct: 121 ATRIITELKDKMPGFSA--SEPLAAQLGGGGVASAQGGAAADAVSALVNLGYGVPQANAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + L+     A    +IRL L+ ++
Sbjct: 179 IAAALRGAGEGAKTEVLIRLGLKELA 204


>gi|260467057|ref|ZP_05813237.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum
           WSM2075]
 gi|259029166|gb|EEW30462.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum
           WSM2075]
          Length = 206

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 135/207 (65%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ L+D+ GV Y+ YC  RTL+ L   G+   LF+ET++R+D +RL
Sbjct: 1   MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60

Query: 61  FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R+WF +L+ +V GVGA+VA+ +LS +T  +L  +I L++  ++++ PG+  K
Sbjct: 61  YGFQSQLEREWFRLLMNNVPGVGAKVALAILSTLTPADLANAIALRDIAMVSRAPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    K++      P+   +A+SALVNLGY +D A  
Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGL--KQELGDGVAPAPITDAVSALVNLGYSRDTAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD S++IR  L+ ++
Sbjct: 179 AVSAALKTAGEDADASKLIRFGLKELA 205


>gi|153008543|ref|YP_001369758.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC
           49188]
 gi|166230577|sp|A6WY75|RUVA_OCHA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151560431|gb|ABS13929.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC
           49188]
          Length = 205

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG +G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGVGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204


>gi|27376647|ref|NP_768176.1| Holliday junction DNA helicase RuvA [Bradyrhizobium japonicum USDA
           110]
 gi|44888480|sp|Q89U81|RUVA_BRAJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|27349788|dbj|BAC46801.1| holliday junction DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 205

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDFVILDVGGVGYQVHCSTRTLQHLPSPGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQGVGA+VA+ VL  +  ++L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDQEREWFRLLQTVQGVGAKVALAVLGTLAPSDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+TELK KA + ++V   V      V+ ++A     P    +AISALVNLGYGQ QA
Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDQRA-----PRPVADAISALVNLGYGQPQA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ S  +     A+ +Q+IRL L+ ++
Sbjct: 176 AAAIASASRSAGEGAETAQLIRLGLKELA 204


>gi|162138516|ref|YP_487870.2| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           HaA2]
          Length = 205

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/209 (44%), Positives = 135/209 (64%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA---HICSMPSFAINAISALVNLGYGQDQA 177
           A RI+TELK K  +L +V   D + V+   A   H    P    +AISALVNLGYGQ QA
Sbjct: 121 AERIVTELKDKVPALGNV---DPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ +  +   + A  +Q+I+L L+ +S
Sbjct: 176 AAAIAAASRAAGDDAATAQLIKLGLKELS 204


>gi|86574402|gb|ABD08959.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris HaA2]
          Length = 222

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/209 (44%), Positives = 135/209 (64%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 18  MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 77

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 78  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 137

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA---HICSMPSFAINAISALVNLGYGQDQA 177
           A RI+TELK K  +L +V   D + V+   A   H    P    +AISALVNLGYGQ QA
Sbjct: 138 AERIVTELKDKVPALGNV---DPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQA 192

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ +  +   + A  +Q+I+L L+ +S
Sbjct: 193 AAAIAAASRAAGDDAATAQLIKLGLKELS 221


>gi|256370112|ref|YP_003107623.1| Holliday junction DNA helicase motor protein [Brucella microti CCM
           4915]
 gi|306844695|ref|ZP_07477280.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1]
 gi|256000275|gb|ACU48674.1| Holliday junction DNA helicase motor protein [Brucella microti CCM
           4915]
 gi|306274867|gb|EFM56637.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1]
          Length = 205

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204


>gi|254719706|ref|ZP_05181517.1| Holliday junction DNA helicase RuvA [Brucella sp. 83/13]
 gi|265984721|ref|ZP_06097456.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           83/13]
 gi|306837835|ref|ZP_07470697.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653]
 gi|264663313|gb|EEZ33574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           83/13]
 gi|306407074|gb|EFM63291.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653]
          Length = 205

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204


>gi|17986616|ref|NP_539250.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str.
           16M]
 gi|23502561|ref|NP_698688.1| Holliday junction DNA helicase RuvA [Brucella suis 1330]
 gi|62290575|ref|YP_222368.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700491|ref|YP_415065.1| Holliday junction DNA helicase RuvA [Brucella melitensis biovar
           Abortus 2308]
 gi|148560383|ref|YP_001259556.1| Holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840]
 gi|161619632|ref|YP_001593519.1| Holliday junction DNA helicase motor protein [Brucella canis ATCC
           23365]
 gi|163845283|ref|YP_001622938.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445]
 gi|189024793|ref|YP_001935561.1| Holliday junction DNA helicase RuvA [Brucella abortus S19]
 gi|225628272|ref|ZP_03786306.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo]
 gi|225853159|ref|YP_002733392.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC
           23457]
 gi|237816080|ref|ZP_04595076.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A]
 gi|254689871|ref|ZP_05153125.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 6 str.
           870]
 gi|254694364|ref|ZP_05156192.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698022|ref|ZP_05159850.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700364|ref|ZP_05162192.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 5 str. 513]
 gi|254703482|ref|ZP_05165310.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 3 str. 686]
 gi|254708429|ref|ZP_05170257.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis
           M163/99/10]
 gi|254708717|ref|ZP_05170528.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis B2/94]
 gi|254714564|ref|ZP_05176375.1| Holliday junction DNA helicase RuvA [Brucella ceti M644/93/1]
 gi|254717461|ref|ZP_05179272.1| Holliday junction DNA helicase RuvA [Brucella ceti M13/05/1]
 gi|254730906|ref|ZP_05189484.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 4 str.
           292]
 gi|256030243|ref|ZP_05443857.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis
           M292/94/1]
 gi|256045313|ref|ZP_05448207.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061740|ref|ZP_05451877.1| Holliday junction DNA helicase RuvA [Brucella neotomae 5K33]
 gi|256114271|ref|ZP_05455016.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256255624|ref|ZP_05461160.1| Holliday junction DNA helicase RuvA [Brucella ceti B1/94]
 gi|256258125|ref|ZP_05463661.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 9 str.
           C68]
 gi|256263350|ref|ZP_05465882.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260167918|ref|ZP_05754729.1| Holliday junction DNA helicase RuvA [Brucella sp. F5/99]
 gi|260547181|ref|ZP_05822919.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038]
 gi|260565796|ref|ZP_05836279.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. 16M]
 gi|260568788|ref|ZP_05839256.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40]
 gi|260755403|ref|ZP_05867751.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 6 str. 870]
 gi|260758625|ref|ZP_05870973.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 4 str. 292]
 gi|260762457|ref|ZP_05874794.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260884418|ref|ZP_05896032.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 9 str. C68]
 gi|261214674|ref|ZP_05928955.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 3 str. Tulya]
 gi|261219293|ref|ZP_05933574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M13/05/1]
 gi|261222827|ref|ZP_05937108.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           B1/94]
 gi|261315928|ref|ZP_05955125.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M163/99/10]
 gi|261316209|ref|ZP_05955406.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis B2/94]
 gi|261322354|ref|ZP_05961551.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M644/93/1]
 gi|261325744|ref|ZP_05964941.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           neotomae 5K33]
 gi|261750859|ref|ZP_05994568.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 5 str. 513]
 gi|261754112|ref|ZP_05997821.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 3 str. 686]
 gi|261757357|ref|ZP_06001066.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           F5/99]
 gi|265987271|ref|ZP_06099828.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M292/94/1]
 gi|265991738|ref|ZP_06104295.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265995575|ref|ZP_06108132.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 3 str. Ether]
 gi|294850954|ref|ZP_06791630.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026]
 gi|297248974|ref|ZP_06932682.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str.
           B3196]
 gi|54039571|sp|P66743|RUVA_BRUSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042200|sp|P66742|RUVA_BRUME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|75496341|sp|Q57BH7|RUVA_BRUAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123740945|sp|Q2YRD1|RUVA_BRUA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230523|sp|A5VS59|RUVA_BRUO2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045743|sp|A9M7K1|RUVA_BRUC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045744|sp|A9WWI0|RUVA_BRUSI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560007|sp|B2S7E0|RUVA_BRUA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766948|sp|C0REW6|RUVA_BRUMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17982229|gb|AAL51514.1| holliday junction DNA helicase ruva [Brucella melitensis bv. 1 str.
           16M]
 gi|23348562|gb|AAN30603.1| Holliday junction DNA helicase RuvA [Brucella suis 1330]
 gi|62196707|gb|AAX75007.1| RuvA, Holliday junction DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616592|emb|CAJ11671.1| Bacterial DNA recombination protein, RuvA:Helix-hairpin-helix
           DNA-binding, class 1 [Brucella melitensis biovar Abortus
           2308]
 gi|148371640|gb|ABQ61619.1| holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840]
 gi|161336443|gb|ABX62748.1| Holliday junction DNA helicase RuvA [Brucella canis ATCC 23365]
 gi|163676006|gb|ABY40116.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445]
 gi|189020365|gb|ACD73087.1| Bacterial DNA recombination protein, RuvA [Brucella abortus S19]
 gi|225616118|gb|EEH13166.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo]
 gi|225641524|gb|ACO01438.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC
           23457]
 gi|237788743|gb|EEP62955.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A]
 gi|260095546|gb|EEW79424.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038]
 gi|260151169|gb|EEW86264.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. 16M]
 gi|260154172|gb|EEW89254.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40]
 gi|260668943|gb|EEX55883.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 4 str. 292]
 gi|260672883|gb|EEX59704.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675511|gb|EEX62332.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 6 str. 870]
 gi|260873946|gb|EEX81015.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 9 str. C68]
 gi|260916281|gb|EEX83142.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 3 str. Tulya]
 gi|260921411|gb|EEX88064.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           B1/94]
 gi|260924382|gb|EEX90950.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M13/05/1]
 gi|261295044|gb|EEX98540.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M644/93/1]
 gi|261295432|gb|EEX98928.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis B2/94]
 gi|261301724|gb|EEY05221.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           neotomae 5K33]
 gi|261304954|gb|EEY08451.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M163/99/10]
 gi|261737341|gb|EEY25337.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           F5/99]
 gi|261740612|gb|EEY28538.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 5 str. 513]
 gi|261743865|gb|EEY31791.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 3 str. 686]
 gi|262766859|gb|EEZ12477.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 3 str. Ether]
 gi|263002694|gb|EEZ15097.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093349|gb|EEZ17418.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264659468|gb|EEZ29729.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M292/94/1]
 gi|294821597|gb|EFG38593.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026]
 gi|297174107|gb|EFH33464.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str.
           B3196]
 gi|326409716|gb|ADZ66781.1| Bacterial DNA recombination protein, RuvA [Brucella melitensis M28]
 gi|326539423|gb|ADZ87638.1| holliday junction DNA helicase RuvA [Brucella melitensis M5-90]
          Length = 205

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKETGEGADSAKLIRLGLKELS 204


>gi|306841422|ref|ZP_07474124.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2]
 gi|306288528|gb|EFM59880.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2]
          Length = 205

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204


>gi|91978630|ref|YP_571289.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           BisB5]
 gi|123735096|sp|Q130V1|RUVA_RHOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91685086|gb|ABE41388.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris BisB5]
          Length = 205

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDYVILDVHGVGYQVHCSSRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDHEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI++ELK K  +LS+V   V Q    ++  +A     P    +AISALVNLGYGQ QA
Sbjct: 121 AERIVSELKDKVPALSNVDPAVVQLSGALDDNRA-----PRPVTDAISALVNLGYGQPQA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ +  +   + A  +Q+I+L L+ +S
Sbjct: 176 AAAIAAAARAAGDDAATAQLIKLGLKELS 204


>gi|118588334|ref|ZP_01545743.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM
           12614]
 gi|118439040|gb|EAV45672.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM
           12614]
          Length = 205

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQGLPRPGEAAVLFIETIVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+WF +L +VQGVGA+VA+G+L  + A+E+  +I L +  VI++ PG+  ++
Sbjct: 61  YGFGIEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKAVISRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK KA  L++V Q  ++       ++ + P     A+SAL NLGY Q QA+ A
Sbjct: 121 AERIISELKDKAPGLATVDQGTIAVSQTIADNVAARP--VAEAVSALTNLGYAQAQASGA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L+     A    +IRL L+ ++
Sbjct: 179 VAKALQSAGEDATTETLIRLGLKELA 204


>gi|182677007|ref|YP_001831153.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|229560003|sp|B2IAW4|RUVA_BEII9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|182632890|gb|ACB93664.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 205

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 133/208 (63%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   ED+V++DVQGV YI++C  RTL  L K G    L +E  +R+D IRL
Sbjct: 1   MIGKLTGLVDSQGEDHVILDVQGVGYIVFCSSRTLRLLPKPGASTALLIEMQVREDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+++R WF LLQSVQGVGA+VA+ +   ++ATEL ++I LQ+   + + PG+  K+
Sbjct: 61  FGFPSEVERDWFRLLQSVQGVGAKVALALQGLLSATELAQAIALQDKASLGRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A+R++TELK K  +L  V  +   ++    E     + P  A +AI+ALVNLGYG+ QA 
Sbjct: 121 AARLITELKDKMPALGPVDSLTAKLTIAEAE----GTAPVAAQDAITALVNLGYGRPQAA 176

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV + L+     A  + +IR  L+ ++
Sbjct: 177 AAVATSLEALGETAPLADLIRRGLKELA 204


>gi|296447311|ref|ZP_06889239.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium
           OB3b]
 gi|296255176|gb|EFH02275.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium
           OB3b]
          Length = 204

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/207 (43%), Positives = 133/207 (64%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   +D+V++DVQGV Y+++C  RTL  L + G+  +L +ET +R+D IRL
Sbjct: 1   MIGKLKGVVDSYGDDFVILDVQGVGYVVHCSTRTLQKLPRAGEAASLAIETQVREDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R WF LLQSVQGVGA+VA+ +LS +   EL  +I  Q+  ++A+  G+  K+
Sbjct: 61  FGFSADAERDWFRLLQSVQGVGAKVALAILSILGPGELASAIAGQDKAMVARASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA + +++   D +          S P  A +AISALVNLGYG+ QA  A
Sbjct: 121 AARIVAELKDKAPAFAAL---DPALARLSGETEASAPQAAQDAISALVNLGYGRPQAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V + LK     AD   +IR  L+ ++ 
Sbjct: 178 VAASLKALGESADTGALIRRGLKELAS 204


>gi|239832790|ref|ZP_04681119.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG
           3301]
 gi|239825057|gb|EEQ96625.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG
           3301]
          Length = 205

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y  +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYAAFCSARTLGNLGGAGEAAVLFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204


>gi|170746561|ref|YP_001752821.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans
           JCM 2831]
 gi|229560103|sp|B1M6A3|RUVA_METRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170653083|gb|ACB22138.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans
           JCM 2831]
          Length = 205

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 91/207 (43%), Positives = 132/207 (63%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV YI++C  RTL  + K+G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGVVDSFGEDFVILDVSGVGYIVHCSARTLQRMPKVGEPAELSIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVGARVA+GVLS +    L  +I   +   I++ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGARVALGVLSVLEPEALASAIATGDKGSISRAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A+R+  ELK KA + + V   D + V    A    + P    +A+SALVNLGY Q QA  
Sbjct: 121 AARLAAELKDKAPAFAPV---DPALVALAGAVEEGAAPQPVADAVSALVNLGYPQVQAAA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ + LK     A+   +IRL LR ++
Sbjct: 178 AIAAALKGAGEGAEAKVLIRLGLRELA 204


>gi|323138242|ref|ZP_08073314.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242]
 gi|322396494|gb|EFX99023.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242]
          Length = 205

 Score =  171 bits (432), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y+++C  RTL  L + G+   L +ET +R+D IRL
Sbjct: 1   MIGKLKGLIDSYGEDFVILDVNGVGYVVHCSSRTLQKLPRAGEAAALAIETQVREDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++++R WF LLQ+VQGVGA+VA+G+LS ++++E+  +I  Q+  ++A+ PG+  K+
Sbjct: 61  FGFEAEVERDWFRLLQTVQGVGAKVALGILSILSSSEIASAIATQDKAMVARAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA +  + V   ++ +  E A   S PS   +AISALVNLGYG+ QA  A
Sbjct: 121 AARIVAELKDKAPAFGA-VDPVVAKLAGEDAD-ASAPSAVRDAISALVNLGYGRPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     A+   +IR  LR ++
Sbjct: 179 VAASVKALGEGAETGALIRQGLRELA 204


>gi|220921373|ref|YP_002496674.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS
           2060]
 gi|254767374|sp|B8IM27|RUVA_METNO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219945979|gb|ACL56371.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS
           2060]
          Length = 205

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L  +G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGVVDSYGEDFVILDVHGVGYVVHCSARTLQRLPPVGEAADLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   IA+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPADLATAIATGDKGAIARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + V    +      +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPVDPALIRLAGAVEERTAPQP--VADAISALVNLGYPQIQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + L+     A+   +IRL LR ++
Sbjct: 179 VAAALQGAGEGAEAKTLIRLGLRELA 204


>gi|13473339|ref|NP_104906.1| Holliday junction DNA helicase RuvA [Mesorhizobium loti MAFF303099]
 gi|20455256|sp|Q98F75|RUVA_RHILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|14024088|dbj|BAB50692.1| Holliday branch migration protein; RuvA [Mesorhizobium loti
           MAFF303099]
          Length = 206

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 134/207 (64%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ L+D+ GV Y+ YC  RTL+ L   G+   LF+ET++R+D +RL
Sbjct: 1   MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60

Query: 61  FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R+WF +LL +V GVGA+VA+ +LS +   +L  +I L++  ++++ PG+  K
Sbjct: 61  YGFQSALEREWFRLLLNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    K++      P+   +A+SALVNLGY +D A  
Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGL--KQELGEGVAPAPITDAVSALVNLGYSRDTAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD S++IR  L+ ++
Sbjct: 179 AVAAALKTAGEDADASKLIRFGLKELA 205


>gi|188580172|ref|YP_001923617.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001]
 gi|229560102|sp|B1Z924|RUVA_METPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|179343670|gb|ACB79082.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001]
          Length = 208

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + V    ++     +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPVDPALVALTGAVEDRTAPQP--VADAISALVNLGYPQVQASAA 178

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           + + LK   + A+  +   +IRL LR ++
Sbjct: 179 IAAALKGLGDGAETVEAKTLIRLGLRELA 207


>gi|158422139|ref|YP_001523431.1| Holliday junction DNA helicase RuvA [Azorhizobium caulinodans ORS
           571]
 gi|172048036|sp|A8IM99|RUVA_AZOC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158329028|dbj|BAF86513.1| DNA recombination protein [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 135/206 (65%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED++++DV GV Y+++C  RTL  L ++G+   LF+ETH+R+DQIRL
Sbjct: 1   MIGKLKGTVDSFGEDHLILDVHGVGYLVHCSGRTLQALPRVGEAAVLFIETHVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+++ +R+WF LLQ +QG+G + A+ +LS +  ++L +++ L +   +A+  G+  ++
Sbjct: 61  FGFVTEAEREWFRLLQGIQGIGTKTALAILSTLKPSDLAQAVALGDKTALARANGVGPRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+TELK K  + ++            +A   +  + A +A+SALVNLGYGQ QA TA
Sbjct: 121 ATRIVTELKDKVPAFTAADPGLARLAADVEATEAAGGALA-DAVSALVNLGYGQAQAHTA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +K    A    +IRL L+ ++
Sbjct: 180 IAAAGRKAGEDATTETLIRLGLKELA 205


>gi|83308729|emb|CAJ01639.1| holliday junction dna helicase, ruvA [Methylocapsa acidiphila]
          Length = 204

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 130/206 (63%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK++G ++   ED+V++DV GV YI++C  RTL  L ++G+  +L +ET MR+D +RL
Sbjct: 1   MIGKLRGVVDSFGEDFVILDVNGVGYIVHCSSRTLQRLSRVGELASLAIETQMREDSLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ DR WF LLQSVQGVGA+VA+ V   + A+EL  +I  Q+   IA+  G+  K+
Sbjct: 61  FGFSTEADRDWFKLLQSVQGVGAKVALAVQGILEASELAAAIAFQDKAAIARASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA +       ++     E A   + P+   +AISALV LGYG+ QA  A
Sbjct: 121 AARIVAELKDKAPAAGGA---EVHLQAAEGASGQAAPTAVTDAISALVTLGYGRPQAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +      A  +++IR  L+ +S
Sbjct: 178 VAASVAALGEGAATAELIRRGLKELS 203


>gi|307944538|ref|ZP_07659878.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4]
 gi|307772287|gb|EFO31508.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4]
          Length = 205

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+    D+V+IDV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTIDSYGGDHVIIDVHGVGYQVHCPSRILQSLPRAGEAAVLFIETVVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + +R+WF LL +VQGVGA+VA+G+L  + A+E+  +I L +   I + PG+  ++
Sbjct: 61  FGFGDEAEREWFRLLTTVQGVGAKVALGILGILKASEIANAIALSDKATITRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK KA S +SV    ++        + + P     A+SAL NLGYGQ QA  A
Sbjct: 121 AERILSELKDKAPSYASVDDATVAVSQSVSDDVAARP--VAEAVSALTNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   ++     A    +IRL L+ ++
Sbjct: 179 VARAVQSAGEDATTETLIRLGLKELA 204


>gi|254473163|ref|ZP_05086561.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062]
 gi|211957884|gb|EEA93086.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062]
          Length = 204

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   +D+VL+DVQGVCY ++CP R L  L ++G+   L +ET +R+D I+L
Sbjct: 1   MIGKLKGVVDSYGDDFVLLDVQGVCYQVHCPSRVLQQLPRVGEAAVLAIETMVREDMIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R+WF +L +VQGVGA+VA+G+L  + A+E+  +I L +   I + PG+  ++
Sbjct: 61  FGFAEDSEREWFRILMTVQGVGAKVALGILGIMKASEVANAIALGDKTAITRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +SV    ++       ++ S P    +A+SAL NLGY   QA+ A
Sbjct: 121 AERIVTELKDKAPAFASVEDDTIAVSQSVAENVASRP--VADAVSALSNLGYQPAQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     A   ++IRL L+ ++
Sbjct: 179 VAAAVKTAGEDASAEKLIRLGLKELA 204


>gi|319781019|ref|YP_004140495.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166907|gb|ADV10445.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 206

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 132/207 (63%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ L+D+ GV Y+ YC  RTL+ L   G+   LF+ET++R+D +RL
Sbjct: 1   MIGKLKGTLDEVDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60

Query: 61  FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R+WF +L+ +V GVGA+VA+ +LS +   +L  +I L++  ++++ PG+  K
Sbjct: 61  YGFQSVLEREWFRLLMNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    +    + S P    +A+SALVNLGY +D A  
Sbjct: 121 VAERIVTELKNKAPAYAGTASGTIGLKQELGDGVASAP--ITDAVSALVNLGYSRDTAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD  ++IR  L+ ++
Sbjct: 179 AVAAALKTAGEDADAPKLIRFGLKELA 205


>gi|328542537|ref|YP_004302646.1| Holliday junction ATP-dependent DNA helicase ruvA [polymorphum
           gilvum SL003B-26A1]
 gi|326412283|gb|ADZ69346.1| Holliday junction ATP-dependent DNA helicase ruvA [Polymorphum
           gilvum SL003B-26A1]
          Length = 205

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 125/206 (60%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDHVVLDVHGVGYQVHCPSRVLQGLPRTGEAAVLFIETLVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+WF LL +VQGVGA+VA+ VL  + A E+  +I L +   I++ PG+  ++
Sbjct: 61  YGFAQEAEREWFRLLMTVQGVGAKVALAVLGVLKAGEIANAIALGDKATISRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA   +S+    ++        + + P     A+SAL NLGY Q QA+ A
Sbjct: 121 AERILAELKDKAPGYASIDADTLAVAQAVGDDVAARP--VAEAVSALTNLGYAQPQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   LK     A    +IRL LR ++
Sbjct: 179 VARALKAAGEAATTETLIRLGLRELA 204


>gi|256160418|ref|ZP_05458107.1| Holliday junction DNA helicase RuvA [Brucella ceti M490/95/1]
 gi|265998786|ref|ZP_06111343.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M490/95/1]
 gi|262553475|gb|EEZ09244.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M490/95/1]
          Length = 193

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 130/195 (66%), Gaps = 2/195 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDS 195
           V + LK+    AD +
Sbjct: 179 VAAALKETGEGADSA 193


>gi|298293003|ref|YP_003694942.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506]
 gi|296929514|gb|ADH90323.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506]
          Length = 205

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/207 (41%), Positives = 136/207 (65%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L   G+  TLF+ET +R+D IRL
Sbjct: 1   MIGKLKGIVDSYVEDHVILDVHGVGYLVHCSARTLQQLPSPGEAATLFIETFVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++ WF LLQ+VQGVGA+VA+ VLS ++ +EL  ++ L +  ++A+  G+  K+
Sbjct: 61  YGFASPAEKAWFTLLQNVQGVGAKVALSVLSVLSPSELANAVALGDRAMVARANGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK-EQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A+RI+ ELK KA   + +         + E+ H    P+   +A+SALVNLGY Q QA+ 
Sbjct: 121 AARIVAELKDKAPGFADIDPAVAGLAAQIEERH---APAPVADAVSALVNLGYAQIQASA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + +++    AD +++IRL L+ ++
Sbjct: 178 AVAAAMREAGEGADAARLIRLGLKELA 204


>gi|319406256|emb|CBI79893.1| holliday junction DNA helicase RuvA [Bartonella sp. AR 15-3]
          Length = 214

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 142/213 (66%), Gaps = 12/213 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++ +EL ++I L ++ +I++ PG+  K+
Sbjct: 61  FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVSELSQAITLNDTAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQD---MSCVN--KEQAHICSMPSFAINAISALVNLGYGQD 175
           + RI++ELK K + LS    ++    S +N   E+ H    P+   +A+ AL+ LG+  D
Sbjct: 121 SERIVSELKSKTL-LSKEDNKNPALSSSLNFSSEEKH---QPTH--DALLALIKLGFDHD 174

Query: 176 QATTAVVSVLKKEK-NIADDSQIIRLALRAISC 207
           +ATTA+ S L   K  +   + ++R +LR +S 
Sbjct: 175 KATTALASALSALKGEMISSALLVRHSLRLLSS 207


>gi|163850397|ref|YP_001638440.1| Holliday junction DNA helicase motor protein [Methylobacterium
           extorquens PA1]
 gi|218528957|ref|YP_002419773.1| Holliday junction DNA helicase RuvA [Methylobacterium
           chloromethanicum CM4]
 gi|240137474|ref|YP_002961945.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens AM1]
 gi|229560101|sp|A9W1B3|RUVA_METEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766970|sp|B7L255|RUVA_METC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163662002|gb|ABY29369.1| Holliday junction DNA helicase RuvA [Methylobacterium extorquens
           PA1]
 gi|218521260|gb|ACK81845.1| Holliday junction DNA helicase RuvA [Methylobacterium
           chloromethanicum CM4]
 gi|240007442|gb|ACS38668.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens AM1]
          Length = 208

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + +    ++     +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTAPQP--VADAISALVNLGYAQIQASAA 178

Query: 181 VVSVLK---KEKNIADDSQIIRLALRAIS 206
           + + LK   +E    +   +IRL LR ++
Sbjct: 179 IAAALKGLGEEAGTVEAKTLIRLGLRELA 207


>gi|90418966|ref|ZP_01226877.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337046|gb|EAS50751.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 206

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 134/206 (65%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+V++DV GV Y+ +C  RTL+ L   G+   LF++T++R+D +RL
Sbjct: 1   MIGKLKGTVDEIGEDHVVVDVHGVGYVAFCGARTLAALPGEGEAVVLFIDTYVREDMLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++ WF LLQ VQGVGARVA+ V+  ++A +L  ++ LQ+  ++A+ PG+  K+
Sbjct: 61  YGFATRAEQDWFRLLQMVQGVGARVALAVIGTLSAGDLANAVALQDKAMVARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA + S     D S   K      +  +   +A+SALVNLGY +DQA  A
Sbjct: 121 AARIVAELKDKAPAFSG-AGSDESLGLKRDIGGGTAAAPVADAVSALVNLGYPRDQAAEA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   LK      D +++IRL L+A+S
Sbjct: 180 VAKALKDAGEAPDSAKLIRLGLKALS 205


>gi|254559651|ref|YP_003066746.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens DM4]
 gi|254266929|emb|CAX22728.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens DM4]
          Length = 208

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + +    ++     +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTAPQP--VADAISALVNLGYAQIQASAA 178

Query: 181 VVSVLK---KEKNIADDSQIIRLALRAIS 206
           + + LK   +E    +   +IRL LR ++
Sbjct: 179 IAAALKGLGEEAGAVEAKTLIRLGLRELA 207


>gi|319899376|ref|YP_004159473.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella
           clarridgeiae 73]
 gi|319403344|emb|CBI76903.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella
           clarridgeiae 73]
          Length = 213

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 137/212 (64%), Gaps = 11/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  +L ++I L +  +I++ PG+  K+
Sbjct: 61  FGFTTKSEKEWFCLLQNVPGVGAKVALALLGTLSINDLSQAITLNDIAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM----SCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           + RI++ELK KA+ LS    +      S +  E+ H    P+   +A+ AL+ LG+  DQ
Sbjct: 121 SERIVSELKNKAL-LSKENNKSFAFSSSSLPSEEKH---QPTN--DALLALIKLGFDHDQ 174

Query: 177 ATTAVVSVLKKEK-NIADDSQIIRLALRAISC 207
           A TAV S L   K      + ++R +L+ +S 
Sbjct: 175 AATAVTSALSSLKGETVSSALLVRHSLKLLSS 206


>gi|319407733|emb|CBI81380.1| holliday junction DNA helicase RuvA [Bartonella sp. 1-1C]
          Length = 215

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 139/218 (63%), Gaps = 21/218 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E ++ D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +   I++ PG+  K+
Sbjct: 61  FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           + RI++ELK K +  S   ++D    NK  A   S+ +F+         +A+ AL+ LG+
Sbjct: 121 SERIVSELKNKTLQFS---KED----NKNPAFSSSL-TFSSEEEYQPTNDALLALIKLGF 172

Query: 173 GQDQATTAV---VSVLKKEKNIADDSQIIRLALRAISC 207
             D+ATTA+   VS LK E      + ++R +L+ +S 
Sbjct: 173 DHDKATTALASAVSALKGE--TVSSALLVRHSLKLLSS 208


>gi|300023944|ref|YP_003756555.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525765|gb|ADJ24234.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 205

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + E ++++DV GV Y +    RTL  L K GD  TL ++TH+R+D IRL
Sbjct: 1   MIGKLKGKVDAIGESFLIVDVHGVGYEVQASSRTLRNL-KPGDDVTLTIDTHVREDAIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ +R WF  LQ++QGVGA+VA+ VL  +   E+  +++L N   + + PG+  K+
Sbjct: 60  FGFQSEFERSWFRTLQTIQGVGAKVALSVLGVLGPQEIANAVVLGNWAAVEEAPGVGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA SL S+     +      A +  +   A  AISAL NLGY   QA  A
Sbjct: 120 ALRIVAELKDKAPSL-SLAGLPATPGGGPAAAVAPVGLPAAEAISALTNLGYNPAQANQA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    ++    AD + +I+ AL+ ++
Sbjct: 179 VALASRELGEAADTAALIKRALKELA 204


>gi|170739181|ref|YP_001767836.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46]
 gi|229560104|sp|B0UA56|RUVA_METS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|168193455|gb|ACA15402.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46]
          Length = 205

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 128/206 (62%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y ++C  RTL  L   G+   L +ET +R+D IRL
Sbjct: 1   MIGKLKGVVDSYGEDFVILDVHGVGYEVHCSARTLQRLPPAGEATDLAIETVVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+G+LS +   EL  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGLLSVLEPAELATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + V    +      +A     P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPVDPALVRLAGAVEARTAPQP--VADAISALVNLGYPQAQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + L+     A+   +IRL LR ++
Sbjct: 179 VAAALQSAGAEAEAKTLIRLGLRELA 204


>gi|240851225|ref|YP_002972628.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup]
 gi|240268348|gb|ACS51936.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup]
          Length = 204

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 132/208 (63%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++L+DV GV Y+++   R    L  +G+  +LFVETH+R+D IRL
Sbjct: 1   MIGKLKGTLEHIFDDHILLDVHGVGYVVFVSNRLRPSLPSVGEALSLFVETHVREDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFATRAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI+ ELK K +      +Q +  V+  Q  + + P  A +A+SAL+ LG+ ++ A+ A
Sbjct: 121 SERIVGELKSKTLPF----EQAVKTVSVPQREMTNQP--AHDALSALMKLGFEREHASRA 174

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207
           +   +   E      + +IR +L+ +S 
Sbjct: 175 LALAMNALEGETVSSALLIRHSLKLLSS 202


>gi|163869137|ref|YP_001610376.1| Holliday junction DNA helicase RuvA [Bartonella tribocorum CIP
           105476]
 gi|189045742|sp|A9IYK7|RUVA_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161018823|emb|CAK02381.1| holliday junction DNA helicase RuvA [Bartonella tribocorum CIP
           105476]
          Length = 204

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 131/208 (62%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E ++EDY+++DV GV Y+++   R    L  +G+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGTLEHIFEDYIVLDVHGVGYVVFISNRLRPSLPSVGEALSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF +LQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFATRAEQEWFCMLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI+ ELK K +      +Q +  V+  Q  I   P  A +A+SAL+ LG+ ++QA  A
Sbjct: 121 SERIVGELKSKTLPF----EQAVKTVSVPQREITHQP--AHDALSALMKLGFEREQAARA 174

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207
           +   +   E      + +IR +L+ +S 
Sbjct: 175 LALAMNALEGEAVSSALLIRHSLKLLSS 202


>gi|49474677|ref|YP_032719.1| Holliday junction DNA helicase motor protein [Bartonella quintana
           str. Toulouse]
 gi|81646802|sp|Q6FYP5|RUVA_BARQU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49240181|emb|CAF26647.1| Holliday junction DNA helicase ruvA [Bartonella quintana str.
           Toulouse]
          Length = 205

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 132/207 (63%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++++DVQGV Y+++   R    L  +G+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHVFDDHIIVDVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFVAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK KA+  +     D +     Q H+        +A+SALV LG+ +DQA  A
Sbjct: 121 SERIVSELKSKALPFN-----DNALHFTPQPHLEVTHQPTNDALSALVKLGFERDQAARA 175

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +   +   E      + +IR +L+ +S
Sbjct: 176 LALAMNALEGETVSSALLIRHSLKLLS 202


>gi|49476147|ref|YP_034188.1| Holliday junction DNA helicase motor protein [Bartonella henselae
           str. Houston-1]
 gi|81648457|sp|Q6G5R0|RUVA_BARHE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49238955|emb|CAF28253.1| Holliday junction DNA helicase ruvA [Bartonella henselae str.
           Houston-1]
          Length = 205

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 136/207 (65%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D+++++VQGV Y+++   R    L  +G+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFDDHIIVNVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFIAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK KA+  S  V       + E   + + P+   +A+SAL+ LG+ +DQA  A
Sbjct: 121 SERIVSELKSKALPFSEKVIHSAPLPHLE---VTNQPTN--DALSALIKLGFERDQAARA 175

Query: 181 V-VSVLKKEKNIADDSQIIRLALRAIS 206
           + ++V   E      + +IR +L+ +S
Sbjct: 176 LALAVNALEGETVSSALLIRHSLKLLS 202


>gi|319409331|emb|CBI82975.1| holliday junction DNA helicase RuvA [Bartonella schoenbuchensis R1]
          Length = 211

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 127/207 (61%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + +D++++DVQGV Y ++   R LS L  +G+   LF+ETH+R + IRL
Sbjct: 1   MIGKLKGILDSICDDHIILDVQGVGYSVFVSNRLLSSLPTLGEHLNLFIETHVRAEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I + PGI  K+
Sbjct: 61  FGFTTKAERDWFCLLQNVPGVGAKVALAILGTLSPGELAQAIALNDVAMIKRAPGIGQKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++E K KA+  +   +      +  QA   + P    +A+SAL  LG+ +DQA  A
Sbjct: 121 SERIISEFKNKALPFNEESKNTAHLASNLQAQETNQP--VNDALSALTKLGFDRDQAAQA 178

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +   L   E+     + +IR +L+ +S
Sbjct: 179 LSCALSSLEEETVSSALLIRHSLKLLS 205


>gi|319404769|emb|CBI78370.1| holliday junction DNA helicase RuvA [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 215

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 137/215 (63%), Gaps = 15/215 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E ++ D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +   I++ PG+  K+
Sbjct: 61  FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRTPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS-----CVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           + RI++ELK K +  S    ++++       + E+ +    P+   +A+ AL+ LG+  +
Sbjct: 121 SERIVSELKNKTLQFSKEDNKNLAFSSSLTFSSEEEY---QPTN--DALLALIKLGFDHE 175

Query: 176 QATTAV---VSVLKKEKNIADDSQIIRLALRAISC 207
           +A TA+   VS LK E      + ++R +L+ +S 
Sbjct: 176 KAATALASAVSALKGE--TISSALLVRHSLKLLSS 208


>gi|154252563|ref|YP_001413387.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans
           DS-1]
 gi|171769603|sp|A7HUZ7|RUVA_PARL1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154156513|gb|ABS63730.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans
           DS-1]
          Length = 205

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 127/209 (60%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK++G ++   ED+ +IDV GV Y + C  RTL  L   G   TL +ET +  + IRL
Sbjct: 1   MIGKLRGIVDSTGEDWAVIDVGGVGYHVTCSSRTLRNLPPAGGAVTLSIETKVSDEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF +D +R+WF LL +VQGVG RVA+GVL  +   +L  +I L + K ++  PG+  K+
Sbjct: 61  IGFTTDSEREWFRLLLAVQGVGTRVALGVLGTLAPADLARAIALDDKKAVSAAPGVGPKV 120

Query: 121 ASRIMTELKGK---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A+RI+TELK K   ++ LS+ ++     VN E     S P  A +A+SALVNLGY Q QA
Sbjct: 121 AARIVTELKDKVPDSMGLSAALE---VGVNGEAVSSVSAP--ARDAVSALVNLGYPQAQA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV +  K+  + A   Q+IR  L+ ++
Sbjct: 176 MGAVAAAAKRLDDAASTEQLIRHGLKELA 204


>gi|114704960|ref|ZP_01437868.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539745|gb|EAU42865.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi
           HTCC2506]
          Length = 206

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 138/207 (66%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E + ED+V++DV GV Y+ +C  RTL+ L  +G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTVEEIGEDHVVVDVHGVGYVAFCGARTLAGLSGVGEAIVLFIETIVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R WF LLQ+VQGVG++VA+ V+  +++ +L  ++ LQ+  ++A+ PG+  K+
Sbjct: 61  YGFATAAERDWFRLLQTVQGVGSKVALAVIGTLSSGDLANAVALQDKAMVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ ELK +A + S    ++   + ++      S P    +A+SAL NLGY +DQA T
Sbjct: 121 AQRIVAELKDRAPAFSGAGSEESFGLKRDIGGGTASAP--VADAVSALTNLGYPRDQAAT 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + ++     AD +++IRL L+A+S
Sbjct: 179 AVATAVRDAGEDADSAKLIRLGLKALS 205


>gi|110635507|ref|YP_675715.1| Holliday junction DNA helicase motor protein [Mesorhizobium sp.
           BNC1]
 gi|123161737|sp|Q11DH5|RUVA_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110286491|gb|ABG64550.1| Holliday junction DNA helicase subunit RuvA [Chelativorans sp.
           BNC1]
          Length = 206

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/207 (43%), Positives = 135/207 (65%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ ++DV GV Y+ +C  R+LS LG +G   TLF+ET++R+D IRL
Sbjct: 1   MIGKLKGVLDEIGEDHCVVDVGGVGYVAHCSARSLSTLGSVGTPVTLFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF + L+R+WF LLQ +VQGVGA+VA+ VLS +T +EL  +I L++   +A+ PG+  K
Sbjct: 61  YGFRTVLEREWFRLLQNNVQGVGAKVALSVLSTLTPSELANAIALRDIATVARAPGVGRK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    K+       P+   +A+SAL NLGY +D A  
Sbjct: 121 VAERIVTELKSKAPAFAGEAAGAIGL--KQDLGEGVAPAPVSDAVSALANLGYSRDIAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD   +IRL L+ ++
Sbjct: 179 AVAAALKSAGEGADTGTLIRLGLKELA 205


>gi|121601945|ref|YP_988488.1| Holliday junction DNA helicase motor protein [Bartonella
           bacilliformis KC583]
 gi|166230519|sp|A1UR85|RUVA_BARBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120614122|gb|ABM44723.1| Holliday junction DNA helicase RuvA [Bartonella bacilliformis
           KC583]
          Length = 217

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 133/215 (61%), Gaps = 9/215 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++ ++ED++++DVQGV Y+++   R LS L + G   +LF+ETH+R+D IRL
Sbjct: 1   MIGKLTGILDSVFEDHIILDVQGVGYVVFLSNRLLSSLPERGQAVSLFIETHVREDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + +++ WF LLQ+V+GVGA+VA+ +LS +   +L ++I L +  +I++ PG+   +
Sbjct: 61  FGFETKVEQDWFCLLQNVRGVGAKVALAILSTLPPPQLAQAITLSDIAMISRSPGVGKMV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-------FAINAISALVNLGYG 173
           + RI+ ELK KA+  S+   Q M       +   S           +++A++AL  LG+ 
Sbjct: 121 SERIINELKNKALP-SNAPHQSMPHFVSYSSETSSQAGTQHTGHQHSMDALAALTKLGFE 179

Query: 174 QDQATTAVVSVLKK-EKNIADDSQIIRLALRAISC 207
           +DQAT A+   +K  E      + +IR +L+ +S 
Sbjct: 180 RDQATHALQEAIKAFEGETPSSALLIRHSLKLLSS 214


>gi|217976203|ref|YP_002360350.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2]
 gi|254767375|sp|B8EJI5|RUVA_METSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|217501579|gb|ACK48988.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2]
          Length = 209

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   EDYV++DV GV Y+++C  RTL  L   G    L ++T MR+D I+L
Sbjct: 1   MIGKLKGLVDSQGEDYVILDVNGVGYVVHCSSRTLQNLPPQGQATALAIDTQMREDSIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +R+WF LLQSVQGVGA+VA+ +   +   E+V +I  Q+    A+  G+  K+
Sbjct: 61  YGFASETEREWFRLLQSVQGVGAKVALAIQGVLRPGEIVTAIAAQDRAAFARASGVGAKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQ 176
           A+RI+ ELK KA +L + +   ++    E A + +  S A+ +AIS LVNLG+G+ Q
Sbjct: 121 AARILAELKDKAPALGASLHT-LAGAGSEGAGVEAPASGAVSDAISVLVNLGFGRSQ 176


>gi|20455269|sp|Q9L9C4|RUVA_RHIET RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7110154|gb|AAF36813.1|AF175525_1 RuvA [Rhizobium etli]
          Length = 206

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DVQGVCY+ YC  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVE--SIILQNSKVIAQIPGISM 118
           FGF++ L+R+WF LL       A       SR           I LQ+   +++ PG+  
Sbjct: 61  FGFMTALEREWFNLLSKASRASAPRWRSPCSRPLNARPSSPMPIALQDRAAVSRAPGVGP 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+A R++TELK +A + +    + ++   K +       +   +A+SAL NLGY +DQA 
Sbjct: 121 KVAMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAA 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV + +K     AD +++IRL L+ ++
Sbjct: 178 NAVAAAMKTAGEGADSAKLIRLGLKELA 205


>gi|83592424|ref|YP_426176.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170]
 gi|123739581|sp|Q2RVF6|RUVA_RHORT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83575338|gb|ABC21889.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170]
          Length = 212

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 111/184 (60%), Gaps = 4/184 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++ + ED+ +IDV GV Y+++CP R L+ L   G    L VET +R+D I L
Sbjct: 1   MIAKLKGLVDSVAEDHAVIDVGGVGYLVFCPARVLTRLPSPGQAVALVVETQVREDHISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +R WF LL +VQGVG++VA+ VLS ++A ++ ++I   +   + + PG+  K+
Sbjct: 61  FGFLETAERDWFRLLSTVQGVGSKVALSVLSVLSAGQISQAIAAGDKAALGRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI----NAISALVNLGYGQDQ 176
           A+RI +ELK KA++L  +          + A              +A+SALVNLGYG+ +
Sbjct: 121 AARIASELKDKAVALGGMPAPPPRGAGTDAAGEGPPGGPTGDVLGDAVSALVNLGYGRSE 180

Query: 177 ATTA 180
           A  A
Sbjct: 181 AVGA 184


>gi|312113736|ref|YP_004011332.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218865|gb|ADP70233.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC
           17100]
          Length = 209

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 127/209 (60%), Gaps = 4/209 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ +  D+ +IDV GV Y + C  RTL  L K G+   L +ET++R+D I+L
Sbjct: 1   MIGKLKGIVDAVGADHAIIDVGGVGYEVACSPRTLGAL-KPGEPVALSIETYVREDAIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R WF LLQSVQGVGA+VA+ +L+ + + +L ++I +Q+   + + PG+  K+
Sbjct: 60  YGFLSEAERGWFRLLQSVQGVGAKVALSILATLDSAQLAQAIAMQDRVSVTRAPGVGPKV 119

Query: 121 ASRIMTELKGKAISLSSVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ ELK KA  L+  V       S          + PS A  A+SALVNLGY   QA
Sbjct: 120 ALRIVNELKDKAPPLAFSVAAIAAPASGSASAAIPASAAPSPAAEAVSALVNLGYAPLQA 179

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ + L K    A    +IRL L+ ++
Sbjct: 180 NAAISTALGKAGEDARTEDLIRLGLKDLA 208


>gi|239947225|ref|ZP_04698978.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921501|gb|EER21525.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 203

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 130/204 (63%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKSFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A RI+ ELKGK   +SS      S + K+  +I ++   A N  I ALVNLG+ + +A  
Sbjct: 120 AERIVLELKGKVAKISS-----GSTIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV S++ +   I+ D Q+I+ AL+
Sbjct: 175 AVQSIITQNPEISID-QLIKTALK 197


>gi|23010264|ref|ZP_00051013.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 182

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 96/138 (69%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGLVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+GVLS +    L  +I   +   IA+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPEALATAIATGDKGAIARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSV 138
           A+R++ ELK KA + + +
Sbjct: 121 AARLVAELKDKAPAFAPI 138


>gi|144898113|emb|CAM74977.1| Holliday junction ATP-dependent DNA helicase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 209

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG I+ L +D+ ++DV GV Y+++C  RTL  L ++G    L VETH+R+D I L
Sbjct: 1   MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +R WF LL +VQGVGA+VA+ +LS  T  +L+++I  Q+  ++ +  G+  K+
Sbjct: 60  YGFLEPGERDWFNLLITVQGVGAKVALAILSVATPEQLLQTIAAQDKVMLTRASGVGPKL 119

Query: 121 ASRIMTELKGKA--ISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQ 174
           A RI+TELK KA  +SL        +          S P        +AISALVNLGY +
Sbjct: 120 ALRILTELKDKAGKMSLGGFASSAGTAA-------ISTPVGDGGLMEDAISALVNLGYKR 172

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALR 203
            +A  AV  V K+    AD S +IR AL+
Sbjct: 173 LEAFEAVGIVAKELGEGADSSTLIRHALK 201


>gi|114570973|ref|YP_757653.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10]
 gi|122315334|sp|Q0ALX8|RUVA_MARMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114341435|gb|ABI66715.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10]
          Length = 213

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 119/214 (55%), Gaps = 8/214 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L  D +++DV GV Y++    RTLS L    D   L +ETH+R+D  +L
Sbjct: 1   MIGMLTGRVAALGADELVLDVSGVGYLVGAGARTLSRLEPDQDIV-LHIETHVREDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL D+DR WF+ LQ++QGVGA+ A  +L  +  +E+  +  L +    A+  G+  K+
Sbjct: 60  YGFLDDIDRAWFVHLQNIQGVGAKAAFAILDTVPVSEIANAAALGDKSTFARAKGVGPKL 119

Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYG 173
           A+RI TELK      G++ S+   V  D               S A  +A+SALVNLGY 
Sbjct: 120 ATRIATELKDKAPPTGRSFSIGLPVHSDDGTTGGAPVAPAGGDSLAREDAVSALVNLGYN 179

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           + QA  AV  +L+   + A    +IRL+L+ ++ 
Sbjct: 180 ESQARQAVAKILRDADSEAPLGDVIRLSLKELAA 213


>gi|157828405|ref|YP_001494647.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933115|ref|YP_001649904.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str.
           Iowa]
 gi|166200256|sp|A8GRW4|RUVA_RICRS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045764|sp|B0BXC2|RUVA_RICRO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157800886|gb|ABV76139.1| Holliday junction DNA helicase motor protein [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908202|gb|ABY72498.1| Holliday junction DNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 204

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 129/204 (63%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGTLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A RI+ ELKGK   +SS      S + KE  +I ++   A N  I ALVNLG+ + +A  
Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  ++ +   I+ D ++I+ AL+
Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197


>gi|157964465|ref|YP_001499289.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5]
 gi|157844241|gb|ABV84742.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5]
          Length = 212

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 9   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 67

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 68  YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 127

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A R++ ELKGK   +SS      S + K+  +I ++   A N  I ALVNLG+ + +A  
Sbjct: 128 AERVVLELKGKVAKISS-----GSAIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQN 182

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  ++ +   I+ D ++I+ AL+
Sbjct: 183 AVQGIITQNPEISID-ELIKTALK 205


>gi|67458996|ref|YP_246620.1| Holliday junction DNA helicase motor protein [Rickettsia felis
           URRWXCal2]
 gi|75536568|sp|Q4ULW8|RUVA_RICFE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67004529|gb|AAY61455.1| Holliday junction DNA helicase RuvA [Rickettsia felis URRWXCal2]
          Length = 203

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 129/204 (63%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DY++IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKIDSQGDDYIIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A RI+ ELKGK   +SS      S + K+  +I ++   A N  I ALVNLG+ + +A  
Sbjct: 120 AERIVLELKGKVAKISS-----GSVIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  ++ +   I+ D ++I+ AL+
Sbjct: 175 AVQGIIIQNPEISID-ELIKTALK 197


>gi|238650928|ref|YP_002916784.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii
           str. Rustic]
 gi|259495655|sp|C4K2D5|RUVA_RICPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|238625026|gb|ACR47732.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii
           str. Rustic]
          Length = 203

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ + L
Sbjct: 1   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASDKTLGTLAE-GEFYKLFIETHVREEHMHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A RI+ ELKGK   +SS      S + KE  +I ++   A N  I ALVNLG+ + +A  
Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  ++ +   I+ D ++I+ AL+
Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197


>gi|91205752|ref|YP_538107.1| Holliday junction DNA helicase motor protein [Rickettsia bellii
           RML369-C]
 gi|122990902|sp|Q1RHZ6|RUVA_RICBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91069296|gb|ABE05018.1| Holliday junction DNA helicase RuvA [Rickettsia bellii RML369-C]
          Length = 203

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++  Y+DYV+IDV GV Y ++   +TLS L + G+   LF+ETH+R+D I L
Sbjct: 1   MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++ +F LLQSV G+G R+A+ +LS +T T++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLSLEEKSFFNLLQSVNGIGTRMALSILSTLTPTDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAINAISALVNLGYGQDQATT 179
           A RI+ EL  K   +SS      S   K+  +I  + P  +   I AL+N+G+ + +A  
Sbjct: 120 AERIVRELSDKVAKISS-----SSAAIKDSLNIKGITPVASSEVIKALINMGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  ++ K   I+ D ++IR AL+
Sbjct: 175 AVQEIITKNPEISID-ELIRTALK 197


>gi|157827122|ref|YP_001496186.1| Holliday junction DNA helicase RuvA [Rickettsia bellii OSU 85-389]
 gi|166200254|sp|A8GWC2|RUVA_RICB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157802426|gb|ABV79149.1| Holliday junction DNA helicase motor protein [Rickettsia bellii OSU
           85-389]
          Length = 203

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++  Y+DYV+IDV GV Y ++   +TLS L + G+   LF+ETH+R+D I L
Sbjct: 1   MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++ +F LLQSV G+G R+A+ +LS +T T++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLSLEEKSFFNLLQSVNGIGTRMALSILSALTPTDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAINAISALVNLGYGQDQATT 179
           A RI+ EL  K   +SS      S   K+  +I  + P  +   I AL+N+G+ + +A  
Sbjct: 120 AERIVRELSDKVAKISS-----SSAAIKDSLNIKGITPVASSEVIKALINMGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  ++ K   I+ D ++IR AL+
Sbjct: 175 AVQEIITKNPEISID-ELIRTALK 197


>gi|83312317|ref|YP_422581.1| Holliday junction DNA helicase RuvA [Magnetospirillum magneticum
           AMB-1]
 gi|123726899|sp|Q2W2A3|RUVA_MAGMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|82947158|dbj|BAE52022.1| Holliday junction resolvasome, DNA-binding subunit
           [Magnetospirillum magneticum AMB-1]
          Length = 212

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG I+ L +D+ ++D  GV Y++ C  +TL+ L + G    LFVET +R+D I L
Sbjct: 1   MIAKLKGLIDSLGDDWAVVDCNGVGYLVACSSKTLARL-ETGTAAALFVETQVREDAISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +R WF LL +VQGVGA+VA+ +LS  +  +L++ I  Q+   + +  G+  K+
Sbjct: 60  FGFLETGERDWFRLLTTVQGVGAKVALAILSVASPDQLLQIIAAQDKAGLTRANGVGPKL 119

Query: 121 ASRIMTELKGKA--ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+TELK KA  I+L       +       A + +      +A+SALVNLGY + +A 
Sbjct: 120 AVRILTELKDKAGKIALGGFSPGGIKDALSASAPLPAASGRMEDAVSALVNLGYKRLEAF 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            AV    ++  + AD S +IR AL+
Sbjct: 180 QAVGETARELGDEADSSALIRAALK 204


>gi|34580551|ref|ZP_00142031.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246]
 gi|28261936|gb|EAA25440.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246]
          Length = 203

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLALEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A RI+ ELKGK   +SS      S + KE  +I ++   A N  I ALVNLG+ + +A  
Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  ++ +   I+ D ++I+ AL+
Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197


>gi|15892454|ref|NP_360168.1| Holliday junction DNA helicase motor protein [Rickettsia conorii
           str. Malish 7]
 gi|20140118|sp|Q92I89|RUVA_RICCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15619609|gb|AAL03069.1| holliday junction DNA helicase RuvA [Rickettsia conorii str. Malish
           7]
          Length = 203

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGQLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A RI+ ELKGK   +SS      S + KE  +I ++   A N  I ALVNLG+ + +A  
Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  ++ +   I+ D ++I+ AL+
Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197


>gi|157825657|ref|YP_001493377.1| Holliday junction DNA helicase RuvA [Rickettsia akari str.
           Hartford]
 gi|166200253|sp|A8GN94|RUVA_RICAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157799615|gb|ABV74869.1| Holliday junction DNA helicase motor protein [Rickettsia akari str.
           Hartford]
          Length = 203

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DY++IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKIDAQGDDYIIIDVNGVGYLVYASGKTLGKLSE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T T++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLTIEEKNFFNLLQSVNGIGTRMALSILSNLTPTDIQIAINNEDKDIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A RI+ ELKGK   +S+      + +  +  +I ++ S A N  I ALVNLG+ + +A  
Sbjct: 120 AERIVLELKGKVAKIST-----GAAIINDSLNIKNITSVASNEVIKALVNLGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           +V  ++ +   I+ D ++I+ AL+
Sbjct: 175 SVQGIVIQNPEISID-ELIKTALK 197


>gi|229586656|ref|YP_002845157.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5]
 gi|259495654|sp|C3PNA4|RUVA_RICAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|228021706|gb|ACP53414.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5]
          Length = 203

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 128/204 (62%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLNLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A RI+ ELKGK   +SS      S + KE  +I  +   A N  I ALVNLG+ + +A  
Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKHITPVASNEVIKALVNLGFSRFEAQN 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  ++ +   I+ D ++I+ AL+
Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197


>gi|260576656|ref|ZP_05844643.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2]
 gi|259021141|gb|EEW24450.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2]
          Length = 224

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 121/219 (55%), Gaps = 17/219 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D+VLIDV+GV YI++   RTL+ L   G+   L+ E  +R+D ++L
Sbjct: 1   MIGKISGRIDYRGADHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+++W  LL +VQGVGA+ AM +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTLLEKEWHRLLMTVQGVGAKAAMAILGTLGAEGAARAISLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISL---------------SSVVQQDMSCVNKE-QAHICSMPSFAINAI 164
           A R++ ELK KA  +               +  V + +    K   A   S  ++  +A+
Sbjct: 121 AQRVVLELKSKAPGVMAMGAALSARAEGNDADAVIEPLPVARKPTPAPTQSRAAYTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           SAL NLGYG   A+ AV      E   AD + +IR+AL+
Sbjct: 181 SALTNLGYGPVDASQAVAQA-AGEAPEADTATLIRIALK 218


>gi|83859806|ref|ZP_00953326.1| Holliday junction DNA helicase motor protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852165|gb|EAP90019.1| Holliday junction DNA helicase motor protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 216

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 118/216 (54%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + E+  +IDV GV Y++    RTL  L + G    L +ETH+R+DQ +L
Sbjct: 1   MIGKLKGVVDCVGEEEAVIDVNGVGYLVSAGSRTLGRL-EPGKPVALHIETHVREDQFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLSD +R WF+ LQSVQGVGA+ A+ +L  I   E+  S IL +     +  G+  K+
Sbjct: 60  FGFLSDSERAWFVRLQSVQGVGAKHALAMLDAIEVGEIESSAILGDPLPFERAKGVGKKL 119

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAI---------NAISALVNL 170
           A RI TELK KA  L  S+                  P+ A          +A+SALVNL
Sbjct: 120 AQRIATELKDKAPPLGRSLGAGVAELAAALAPAGAETPTAAPAPKDNVMRESAVSALVNL 179

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GY +  A  A    L++    A +  +I+ AL+ ++
Sbjct: 180 GYSESDARKAAAEALRQLGEDATEGLVIKSALKELA 215


>gi|114327763|ref|YP_744920.1| Holliday junction DNA helicase RuvA [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315937|gb|ABI61997.1| holliday junction DNA helicase ruvA [Granulibacter bethesdensis
           CGDNIH1]
          Length = 204

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 123/208 (59%), Gaps = 8/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++GL ED  LIDV GV Y++Y   RTL+ L +  +   + +ET +R+D I L
Sbjct: 1   MIGRLTGLVDGLEEDRCLIDVNGVGYVVYASSRTLAALPRAPEVARVLIETQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R WF LL +VQGVGA+V + +LS ++A +L+ +++  + + + +  G+  ++
Sbjct: 61  FGFIDTAERDWFRLLTTVQGVGAKVGLNILSALSAGDLISALMAGDQRALTRASGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A+RI++ELK K  ++ S        +      + S P+  +  + +SAL+NLGY + +A 
Sbjct: 121 AARIVSELKDKVGAMPS------GPMTIGGVGVLSAPAGGVEQDTLSALLNLGYRRPEAL 174

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+  V +     A    I+R  LR ++
Sbjct: 175 AAIRRVREALGEEAGLDAILRQCLRELA 202


>gi|126725530|ref|ZP_01741372.1| Holliday junction DNA helicase motor protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126704734|gb|EBA03825.1| Holliday junction DNA helicase motor protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 221

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G  +    D+VLIDV+GV YI+YC  RTLS L   G   +L+ E  +R+D ++L
Sbjct: 1   MIGKITGIQDMRGTDHVLIDVRGVGYIVYCSDRTLSALPGKGQAVSLYTELLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQG+GA+ +M +L  + A  +  +I L ++  I   PG+  KI
Sbjct: 61  FGFTTLFEKEWHKLLISVQGIGAKASMAILGTLGAEGVGRAITLGDATAIKAAPGVGPKI 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHIC-SMPSFA---------INAISAL 167
           A R++ ELK KA   ++L   + +    V  E   I    P  A          +A+SAL
Sbjct: 121 AQRVVLELKNKAPAIMALGGSLDEATGSVAAEPDDILIEAPQKAKTSPDAVAQSDALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGYG   A  AV  V   E   AD   +IR AL+ ++
Sbjct: 181 TNLGYGPSDAAMAVAEV-AGEMADADAGALIRAALQRLA 218


>gi|332559001|ref|ZP_08413323.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N]
 gi|332276713|gb|EGJ22028.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N]
          Length = 224

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 17/219 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+Y   RTL+ +  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISL------------SSVVQQDMSCVN----KEQAHICSMPSFAINAI 164
           A R++ ELK KA +L            S   + D    +    K +A     PS   +A+
Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPDPGTSSGSRRKTRAPEPPRPSHTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           SAL NLGY Q       V+    E   AD + +IR AL+
Sbjct: 181 SALANLGY-QPTDAAQAVAQAAGESPDADTAALIRAALK 218


>gi|218462458|ref|ZP_03502549.1| Holliday junction DNA helicase RuvA [Rhizobium etli Kim 5]
          Length = 168

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 113/169 (66%), Gaps = 3/169 (1%)

Query: 38  LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97
           LG  G+ C LF+ET++R+DQ++LFGF + L+R+WF LLQSVQGVGA+VA+ VLS +T  E
Sbjct: 2   LGSAGEACVLFIETYVREDQLKLFGFTTALEREWFNLLQSVQGVGAKVALAVLSTLTPGE 61

Query: 98  LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP 157
           L  +I LQ+   +++ PG+  K+A R++TELK +A + +    + ++   K++       
Sbjct: 62  LANAIALQDRAAVSRAPGVGPKVAMRLVTELKNRAPAFAG---EAINIALKQELGEGVAA 118

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +   +A+SAL NLGY +DQA  AV + +K     AD +++IRL L+ ++
Sbjct: 119 APVADAVSALTNLGYSRDQAANAVAAAMKTAGEGADSAKLIRLGLKELA 167


>gi|15604250|ref|NP_220766.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii str.
           Madrid E]
 gi|6226115|sp|Q9ZDE6|RUVA_RICPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3860942|emb|CAA14842.1| HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) [Rickettsia prowazekii]
 gi|292571994|gb|ADE29909.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii Rp22]
          Length = 199

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 125/206 (60%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DYV+IDV GV Y++Y   +TL+ L + G F  LF+ETH+R++ I L
Sbjct: 1   MIGKLNGKIDSHCDDYVIIDVNGVGYLVYASGKTLAKLVE-GKFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G ++A+ +LS +T T++  +I   +  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIQIAINNDDRNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYGQDQA 177
           A RIM ELK K   +  SS + +D            ++ S AIN +  ALVNLG+ + +A
Sbjct: 120 AERIMLELKDKITKIFSSSAIIKD-----------SNISSIAINEVMKALVNLGFTRFEA 168

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V  ++ +   I+ D ++I+ AL+
Sbjct: 169 QNTVQGIITQNPKISID-ELIKTALK 193


>gi|114771193|ref|ZP_01448613.1| Holliday junction DNA helicase motor protein [alpha proteobacterium
           HTCC2255]
 gi|114548118|gb|EAU51005.1| Holliday junction DNA helicase motor protein [alpha proteobacterium
           HTCC2255]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 121/219 (55%), Gaps = 17/219 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G ++    D+VL+DVQGV Y++YC  RTLS L   G    L+ +  +R+D ++L
Sbjct: 1   MIGKITGRVDYRGTDHVLVDVQGVGYMVYCSERTLSGLPSRGGIVALYTDLLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  D++W  LL +VQGVGA+ A+ + S +    + ++I L +   I    GI  KI
Sbjct: 61  FGFTTLADKEWHKLLTTVQGVGAKAALAIASTLGTDGVSKAIALGDVNAIKSAQGIGPKI 120

Query: 121 ASRIMTELKGKAISL-------SSVVQQDMSCVNKEQAHI---------CSMPSFAINAI 164
           A R++TELK KA  +       S+VV+ D S V   Q  +          S  S   +A+
Sbjct: 121 AQRVITELKDKAPKIMAMGGEGSAVVEADESMVIDVQTPVDTPVKNQNRKSEASAQADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           SAL+NLGY    A  A+  V   E   +  ++II+ AL+
Sbjct: 181 SALINLGYAHGDAAGAIAQV-TSEIPSSISTEIIKAALK 218


>gi|221639992|ref|YP_002526254.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides KD131]
 gi|254767384|sp|B9KKV6|RUVA_RHOSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221160773|gb|ACM01753.1| Holliday junction ATP-dependent DNA helicase ruvA [Rhodobacter
           sphaeroides KD131]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 17/219 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+Y   RTL+ +  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEAVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSV--------------VQQDMSCVN--KEQAHICSMPSFAINAI 164
           A R++ ELK KA +L ++               Q   S  +  K +A     PS   +A+
Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPQPGTSSGSRRKTRAPEPPRPSHTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           SAL NLGY Q       V+    E   AD + +IR AL+
Sbjct: 181 SALANLGY-QPTDAAQAVAQAAGESPDADTAALIRAALK 218


>gi|51473576|ref|YP_067333.1| Holliday junction DNA helicase motor protein [Rickettsia typhi str.
           Wilmington]
 gi|81390134|sp|Q68WZ1|RUVA_RICTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|51459888|gb|AAU03851.1| Holliday junction DNA helicase RuvA [Rickettsia typhi str.
           Wilmington]
          Length = 200

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DYV+IDV GV Y++Y    TL+ L + G F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKIDSQCDDYVIIDVNGVGYLVYASGTTLAKLVE-GRFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G ++A+ +LS +T T++  +I   +  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIKIAINNDDKNIFKAISGVGDKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
             RIM ELKGK   + S      S + K+ ++I S+    IN  I ALVNLG+ + +A  
Sbjct: 120 TERIMLELKGKIAKIFS-----SSAIIKDSSNISSVE---INEVIKALVNLGFTRFEAQN 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V  ++ +   I+ D ++I+ AL+
Sbjct: 172 TVQGIITQNTKISID-ELIKTALK 194


>gi|77464125|ref|YP_353629.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides 2.4.1]
 gi|126462968|ref|YP_001044082.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17029]
 gi|90135713|sp|Q3J0F6|RUVA_RHOS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200251|sp|A3PLU4|RUVA_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77388543|gb|ABA79728.1| Holliday junction DNA helicase subunit RuvA [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104632|gb|ABN77310.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17029]
          Length = 224

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 17/219 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+Y   RTL+ +  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV----------------NKEQAHICSMPSFAINAI 164
           A R++ ELK KA +L ++     +                   K +A     PS   +A+
Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPEPGTSSGSRRKTRAPEPPRPSHTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           SAL NLGY Q       V+    E   AD + +IR AL+
Sbjct: 181 SALANLGY-QPTDAAQAVAQAAGESPDADTAALIRAALK 218


>gi|157803866|ref|YP_001492415.1| Holliday junction DNA helicase RuvA [Rickettsia canadensis str.
           McKiel]
 gi|166200255|sp|A8EZ47|RUVA_RICCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157785129|gb|ABV73630.1| Holliday junction DNA helicase motor protein [Rickettsia canadensis
           str. McKiel]
          Length = 204

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 123/204 (60%), Gaps = 9/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G  +   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKADSQGDDYVIIDVNGVGYLVYASGKTLDKLVE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T  ++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTRMALSILSNLTPDDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYGQDQATT 179
           A RI+ ELK K   +SS      S   K+  +I ++     N +  AL+NLG+ + +A  
Sbjct: 120 AERIVLELKDKVTKISS------SSAIKDSLNIKNITPVTSNEVMKALINLGFSRFEAQN 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V  ++ +   I+ D ++I+ AL+
Sbjct: 174 VVQGIITQNPKISID-ELIKTALK 196


>gi|294678733|ref|YP_003579348.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB
           1003]
 gi|294477553|gb|ADE86941.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB
           1003]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 116/217 (53%), Gaps = 15/217 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I     D+VLIDV+GV YI++   RT + L  +G+ C L+ E  +R+D ++L
Sbjct: 1   MIGRIAGVILHRAMDHVLIDVRGVGYIVHVSSRTAANLPPVGEACALYTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  +    +  ++ L +   I   PG+  K+
Sbjct: 61  FGFPTLIEKEWHRLLTSVQGIGAKASLAILGTLGPEGVSRALALGDWNAIKAAPGVGPKL 120

Query: 121 ASRIMTELKGKAISL--------------SSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
           A R++ ELK KA ++               ++++     V +         +F   A+SA
Sbjct: 121 AQRVVMELKDKAPTVMAMGGTLTVDTAPSDALIETAPKPVKRPAPAATRQVNFTAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           L NLGY    A TAV     +     D +++IR ALR
Sbjct: 181 LTNLGYSPSDAATAVARA-SENPEATDTAKLIRTALR 216


>gi|209965101|ref|YP_002298016.1| Holliday junction DNA helicase RuvA [Rhodospirillum centenum SW]
 gi|226698737|sp|B6ITI5|RUVA_RHOCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209958567|gb|ACI99203.1| holliday junction DNA helicase RuvA [Rhodospirillum centenum SW]
          Length = 206

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ ++DV GV Y++    RTL  L   G+  +L  E  + +D I+L
Sbjct: 1   MIAKLTGLLDSTGLDWAIVDVGGVGYLVSASARTLRRLAAPGEAVSLLTEMWVSEDNIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R WF LL +VQGVGARVA+ +LS ++  EL  SI  Q+   + Q  G+  K+
Sbjct: 61  FGFADTEERDWFRLLTTVQGVGARVALNLLSALSPAELTNSIAAQDRTALCQADGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K  S  +      +      A          +A+SALVNLGY + +A TA
Sbjct: 121 AARILNELKEKVASFGAPAPAAATAGKGGAAPAGPA-GAVADAVSALVNLGYRRVEAFTA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V ++    A  S +IR  L+ +S
Sbjct: 180 VNAVAQRLGPEAGVSDLIRAGLKELS 205


>gi|163796368|ref|ZP_02190329.1| elongation factor P [alpha proteobacterium BAL199]
 gi|159178510|gb|EDP63052.1| elongation factor P [alpha proteobacterium BAL199]
          Length = 208

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 126/210 (60%), Gaps = 5/210 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++   +   +IDV GV Y+++   RTL+ LG+ G   ++ V+TH+R+D I L
Sbjct: 1   MIAKLKGLLDSTGDGMAVIDVGGVGYLVFASARTLTALGEPGSAVSVLVDTHVREDHIHL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F +LQ+VQGVGA+ A+ +LS ++  ++  +I  Q+  ++ +  G+  K+
Sbjct: 61  YGFASAAERSCFRMLQTVQGVGAKHALSILSVLSPEDVFTAIAAQDRVMLTRADGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178
             RI+ ELK K ++++  +  D +   +  A +   P      +A+SAL NLGYG+ +A 
Sbjct: 121 GQRIVNELKDKTVNVALGLGADATGPARAAA-VAGQPGDDTVADAVSALSNLGYGRAEAY 179

Query: 179 TAVVSVLKK-EKNIADDSQIIRLALRAISC 207
            AV +  +   + +A D ++I LAL+ ++ 
Sbjct: 180 GAVSTARQALGEGVALD-KLITLALKELAA 208


>gi|84516659|ref|ZP_01004018.1| Holliday junction DNA helicase motor protein [Loktanella
           vestfoldensis SKA53]
 gi|84509695|gb|EAQ06153.1| Holliday junction DNA helicase motor protein [Loktanella
           vestfoldensis SKA53]
          Length = 218

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 118/215 (54%), Gaps = 15/215 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV Y++Y   R ++ L + G+   L+ +  +R+D ++L
Sbjct: 1   MIGKIAGRLEYRSTDHVLIDVRGVGYLVYVSDRVMASLPRNGEAVALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  +I L +   +A+  G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKARGVGPKT 120

Query: 121 ASRIMTELKGKAISL------------SSVVQQDMSCVNKEQAHICSMPSFAINAISALV 168
           A R++ ELK KA  +              V++ D +   +      S  +   +A+SAL 
Sbjct: 121 AQRVIIELKDKAPGVMALGAGLSAATGDEVIEADPAPAPRATPQPAS--TAQADAMSALA 178

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           NLGY    A +AVV  L  +   AD   +IR AL+
Sbjct: 179 NLGYAPGDAASAVVQALGADPQ-ADAGVLIRAALQ 212


>gi|148261887|ref|YP_001236014.1| Holliday junction DNA helicase RuvA [Acidiphilium cryptum JF-5]
 gi|326405391|ref|YP_004285473.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium
           multivorum AIU301]
 gi|166229624|sp|A5G2L3|RUVA_ACICJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146403568|gb|ABQ32095.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum
           JF-5]
 gi|325052253|dbj|BAJ82591.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium
           multivorum AIU301]
          Length = 204

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 120/207 (57%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G  E + +   LIDV GV Y+++C  R+L+ L       TL VET +R+D I L
Sbjct: 1   MIGRLCGTAEQIEDGRCLIDVSGVGYVVFCSARSLAALPAPPARATLLVETQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R WF LL ++QGVGA+VA+ +LS +   +L  +I   +   I + PG+  K+
Sbjct: 61  FGFIDAAERDWFRLLTTIQGVGAKVALNLLSALPPDQLASAIAASDRGAITRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A+R+++EL+ +  ++ +      + +    A   + P   + +A+SALVNLGY + +A  
Sbjct: 121 AARLISELRERIAAMPT----GSAFIPTGTAPPVAPPQGKLADALSALVNLGYRRAEAEA 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +V  +    A   ++IR  LR ++
Sbjct: 177 ALSAVQAEAGEDAALDELIRGGLRRLA 203


>gi|85374915|ref|YP_458977.1| Holliday junction DNA helicase RuvA [Erythrobacter litoralis
           HTCC2594]
 gi|123293674|sp|Q2N811|RUVA_ERYLH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84787998|gb|ABC64180.1| probable holliday junction DNA helicase protein [Erythrobacter
           litoralis HTCC2594]
          Length = 200

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 118/203 (58%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y+++C  ++L+ LG++G+ CT++ +  + ++ +RL
Sbjct: 1   MIAKLKGLLDETGTDWAVIDVSGVGYLVHCSSKSLAALGEVGEACTVYTDLQVSENDMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG++VA+ +LS ++  E+  +    ++ ++A+  G+  K+
Sbjct: 61  LGFAEASERDWFRLLTQVQGVGSKVALAILSALSTEEVQTACANGDAAMVARAQGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +L S         N            + +A+SAL NLG+    A  A
Sbjct: 121 AGRIVNELKDKAGALPSAPGGAAMAANPAGGA-------SADAVSALENLGFKPAIAARA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V +   +    A +S++IR+AL+
Sbjct: 174 VATAQGELGEGASESELIRVALK 196


>gi|296535992|ref|ZP_06898136.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas
           cervicalis ATCC 49957]
 gi|296263678|gb|EFH10159.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas
           cervicalis ATCC 49957]
          Length = 207

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++  ++   + DV GV Y++ C  RTL+ L       +L +ET +R+D I L
Sbjct: 1   MIGKLTGKLDSQFDGGCIFDVNGVGYLVACSARTLAALPAPPGIGSLLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R W+  L  +QGVG +VA+G+LS ++  +L  ++I  +   I + PG+  K+
Sbjct: 61  YGFADATERDWYRTLTGIQGVGPKVALGLLSTLSPADLARALIAGDKGAINRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ EL+ K  +L +        V    A +        +AISAL NLG+ + +A  A
Sbjct: 121 AARLVAELRDKVGALPTGPGLSAGTVTI-AAQLPPADRAQADAISALTNLGWKRPEAAGA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V +K    A    +IR AL+ ++
Sbjct: 180 VQRVAEKLGEGAGLESLIREALKELA 205


>gi|84687718|ref|ZP_01015591.1| Holliday junction DNA helicase motor protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664301|gb|EAQ10792.1| Holliday junction DNA helicase motor protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 222

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 122/217 (56%), Gaps = 15/217 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +D+VLIDV+GV YI++   RTL+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLSGRIDYKGDDHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTDMIVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S ++++WF LL +VQG+GA+ A  +L  + A  +  +I L +   +    G+  K 
Sbjct: 61  HGFTSLVEKEWFRLLMTVQGIGAKAATAILGTLGADGVSRAIALGDWNAVKAAKGLGPKT 120

Query: 121 ASRIMTELKGKAISLSS-------------VVQQDMSCVNKEQAHICSMPSFA-INAISA 166
           A R++ ELK KA ++ +             +V+ D + V           + A   A+SA
Sbjct: 121 AQRVVNELKDKAPTIMAMGAGQTVSAPEDVLVESDATPVAAAPRAAPKPANMAQPEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           L NLGYG  +A +AV + L  + ++ D +++IR AL+
Sbjct: 181 LANLGYGPGEAASAVATALGDDPDL-DTAKLIRAALK 216


>gi|110679369|ref|YP_682376.1| Holliday junction DNA helicase RuvA [Roseobacter denitrificans OCh
           114]
 gi|122972806|sp|Q168A3|RUVA_ROSDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|109455485|gb|ABG31690.1| Holliday junction DNA helicase RuvA, putative [Roseobacter
           denitrificans OCh 114]
          Length = 218

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 121/216 (56%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV Y+++C  RTL+ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKITGRLEYRASDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  + A  +  +I L +   +    G+  KI
Sbjct: 61  FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120

Query: 121 ASRIMTELKGKAISL-------SSVVQQDMSCVNKEQA---HICSMPSFAINAISALVNL 170
           A R++ +LK KA S+       ++V  Q    V + +A    +   PS    A+SAL NL
Sbjct: 121 AQRVVLDLKDKAPSVMGMSDTQATVAAQSSDAVIETRAAPSPVVQNPSAQAEALSALSNL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GY    A  AV     +  + A+   +IR AL+ ++
Sbjct: 181 GYAPGDAAAAVAQAAGELPD-AETPDLIRAALKRLA 215


>gi|146277278|ref|YP_001167437.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17025]
 gi|166200252|sp|A4WRW8|RUVA_RHOS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145555519|gb|ABP70132.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17025]
          Length = 224

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 16/197 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G ++    D+VLIDV+GV YI++   RTL+ +   G+   L+ E  +R+D ++L
Sbjct: 1   MIGKISGILDFRGPDHVLIDVRGVGYIVHVSDRTLAAMPAPGEGVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A  +  +I L +++ I   PG+  KI
Sbjct: 61  FGFTTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGVARAISLGDARSIQAAPGVGPKI 120

Query: 121 ASRIMTELKGKAISL-----------SSVVQQ-DMSCVNKEQAHICSMPSFAIN----AI 164
           A R++ ELK KA +L           ++VV++       + +    + P  A N    A+
Sbjct: 121 AQRVVLELKSKAPALMVMGGAAPARAAAVVEETPEEPAPRRKPSTRAAPPPAANHTGDAL 180

Query: 165 SALVNLGYGQDQATTAV 181
           SAL NLGY    A  AV
Sbjct: 181 SALTNLGYQPSDAAQAV 197


>gi|288957819|ref|YP_003448160.1| holliday junction DNA helicase [Azospirillum sp. B510]
 gi|288910127|dbj|BAI71616.1| holliday junction DNA helicase [Azospirillum sp. B510]
          Length = 208

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 120/209 (57%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+V++DV GV Y++ C  RTLS +  +G+  +L VET +R+++I L
Sbjct: 1   MIAKLTGIVDSTGTDWVVLDVNGVGYLLSCSNRTLSRM-VVGERLSLVVETFIREERIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL ++QGVGAR+A+ +L  +   +L  +I  Q+   + +  G+  K+
Sbjct: 60  HGFGDQAERDWFKLLTTIQGVGARLALSILGVLDPDQLTRAIAAQDKTALVRADGVGPKV 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A+RI+ ELK   G      +      +      A   + P+ A +A+SALVNLGYG+ +A
Sbjct: 120 AARILNELKDKVGNLALGPAAAAGAPAGKGAPAAVPGASPALA-DAVSALVNLGYGRSEA 178

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AVV+  +   + A  S +IR  L+ +S
Sbjct: 179 FGAVVAAGRVLGDDAGVSDLIRQGLKELS 207


>gi|290967870|ref|ZP_06559420.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1
           str. 28L]
 gi|290782009|gb|EFD94587.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1
           str. 28L]
          Length = 200

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +  ++ +Y  IDV GV Y IY P  TL+ L    +  TLF   H+R+D I L
Sbjct: 1   MIGYIRGPVTRIFHEYCFIDVHGVGYRIYAPAATLAALVPERE-TTLFTYMHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   FMLL  V GVG +VA+G+LS +T  E   ++  ++ K + ++PGI  K+
Sbjct: 60  YGFGTQEEYDVFMLLIGVSGVGPKVALGILSAVTPEEFCAAVQRKDLKTLTRMPGIGKKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RI+ EL  K  SL   +         +        S    A+ AL  LGY + +A TA
Sbjct: 120 GDRILFELHDKVASLQGRIPD-----GADNGEDIDSGSHTDEAVEALRGLGYSESEAQTA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V SV  K+ ++ D    IR AL+ + 
Sbjct: 175 VASVTGKDLSVEDK---IRRALQVLG 197


>gi|163733514|ref|ZP_02140957.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis
           Och 149]
 gi|161393302|gb|EDQ17628.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis
           Och 149]
          Length = 218

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 118/216 (54%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV Y+++C  RTL+ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKITGRLEYRTTDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  + A  +  +I L +   +    G+  KI
Sbjct: 61  FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120

Query: 121 ASRIMTELKGKAISL------SSVVQQDMSC----VNKEQAHICSMPSFAINAISALVNL 170
           A R++ +LK KA S+       ++   D +          A +   PS    A+SAL NL
Sbjct: 121 AQRVVLDLKDKAPSVMGMRDTQAIASADATDTVIETTATPAPVLQNPSAQAEALSALSNL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GYG   A  AV     +    A+   +IR AL+ ++
Sbjct: 181 GYGPGDAAGAVAEAAGEMPE-AETPDLIRAALKRLA 215


>gi|292670920|ref|ZP_06604346.1| crossover junction endoribonuclease subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292647541|gb|EFF65513.1| crossover junction endoribonuclease subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 200

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +   + DY  +DV  V Y ++   +T + L  +G+   L++ TH+R+D I L
Sbjct: 1   MIGFLRGKVTYTFPDYCFLDVHDVGYRVFVSHQTRNHL-SVGEEVMLYIHTHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L  + G+G +VA G+LS ITA E    I  ++ K I ++PGI  K 
Sbjct: 60  YGFFSQEEYDLFQHLIGISGIGPKVAQGILSAITANEFYRLIHQKDVKAITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   L+S    D S  +       SM      A  AL+NLG+GQ +    
Sbjct: 120 AERIILELKDK---LTSSSFDDDSFADHAAGFADSMGDKISEATEALLNLGFGQSE---- 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           + SVLKK+ +     +IIR AL
Sbjct: 173 IQSVLKKKMDWESTEEIIRYAL 194


>gi|126732347|ref|ZP_01748147.1| Holliday junction DNA helicase motor protein [Sagittula stellata
           E-37]
 gi|126707216|gb|EBA06282.1| Holliday junction DNA helicase motor protein [Sagittula stellata
           E-37]
          Length = 222

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I    ED+VLIDV+GV Y++YC  R L+ LG+ G+F  L+ +  +R+D ++L
Sbjct: 1   MIGRIAGQIVYRGEDHVLIDVRGVGYVVYCTDRVLASLGRPGEFAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++WF LL SVQGVGA+ ++ +L  + A  +  ++ L +   +    GI  K 
Sbjct: 61  FGFPTLVEKEWFRLLMSVQGVGAKASLAILGALGADGVSRALALGDWNAVKAAKGIGPKT 120

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKE---------QAHICSMPSFAINAISA 166
           A R++ ELK K     A+ + +     +S    E          A    + S    A+SA
Sbjct: 121 AQRVVNELKDKAPMVMAMGVGASPPPPLSDAPDEVVETAARPPAAPPAPVASAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG  +A  AV     ++ ++ D + +IR AL+ ++
Sbjct: 181 LGNLGYGPGEAAGAVAQAAGEDGSL-DTAGLIRAALKLLA 219


>gi|254294768|ref|YP_003060791.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814]
 gi|254043299|gb|ACT60094.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814]
          Length = 209

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 113/208 (54%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG +    +   LIDV GV Y+++C  RTL+ L  IG   T+FVET M ++ I+L
Sbjct: 1   MIARLKGIVAATGDGQALIDVNGVGYVLFCGGRTLARL-TIGRENTVFVETQMSENAIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  DR WF  LQ   GVGA+ A+ +L  +T  +L+++I+L ++  + +  G+  K+
Sbjct: 60  YGFETAEDRAWFSRLQDAPGVGAKAALNILDALTPAQLMDAIVLGDAASVQRAHGVGKKL 119

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R+++E K K     L SV       V    +   +       A SAL NLGY    A 
Sbjct: 120 AERVVSEFKDKPPPAGLFSVSFAPSEGVEGLASTSTASTGSRAAAASALTNLGYQNVDAQ 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV    K+    A +  +I+ AL+A++
Sbjct: 180 RAVAVAAKELGEDASEGALIKAALKALA 207


>gi|116748437|ref|YP_845124.1| Holliday junction DNA helicase RuvA [Syntrophobacter fumaroxidans
           MPOB]
 gi|166231451|sp|A0LGY7|RUVA_SYNFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116697501|gb|ABK16689.1| Holliday junction DNA helicase subunit RuvA [Syntrophobacter
           fumaroxidans MPOB]
          Length = 197

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 104/186 (55%), Gaps = 9/186 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     DY++IDV GV YI+Y P+ T   L   GD   L + TH+R+D I+L
Sbjct: 1   MIGHLEGRLRHKAPDYIVIDVHGVGYIVYVPLSTFYDLPGPGDTVALNIHTHIREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F+ L +V GVG R+A+ +LS +T  +L   I+ Q    +  IPG+  KI
Sbjct: 61  YGFRTVAEKDMFLRLITVNGVGPRLAVNILSGLTPDDLHRIILQQEGFRLKSIPGVGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K       V++       EQ    +  S+  +A SALVNLGY   +A  A
Sbjct: 121 AERILLELRDKM-----SVKKGREA---EQPAPAAESSYG-DAYSALVNLGYRPAEAEKA 171

Query: 181 VVSVLK 186
           +   +K
Sbjct: 172 LGKAIK 177


>gi|85703560|ref|ZP_01034664.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217]
 gi|85672488|gb|EAQ27345.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217]
          Length = 219

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 116/219 (52%), Gaps = 16/219 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I+    D+VLIDV+GV Y++YC  RTLS L  +G    L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPGVGGMAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I + +   +    GI  K 
Sbjct: 61  FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPEGVGRAIAIGDWHSVTAAKGIGAKT 120

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNK------EQAHICSMPSFAINAISALVN 169
           A R++ ELK K     A+  +    QD   V +         H  + P     A+SAL N
Sbjct: 121 AQRVVNELKDKAPLIMAMGAAPPPAQDAGEVIETGPIQIAPVHAPTDPGAQAEALSALTN 180

Query: 170 LGY--GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           LGY  G+     A V+    E   AD   +IR ALR ++
Sbjct: 181 LGYSPGEAAGAVAQVAGEMPEAATAD---LIRAALRRLA 216


>gi|85709397|ref|ZP_01040462.1| Holliday junction DNA helicase motor protein [Erythrobacter sp.
           NAP1]
 gi|85688107|gb|EAQ28111.1| Holliday junction DNA helicase motor protein [Erythrobacter sp.
           NAP1]
          Length = 228

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 115/203 (56%), Gaps = 5/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++ + ED+ ++DVQGV Y+++C  RTLS LG+ G+ CT+  +  + ++ +RL
Sbjct: 27  MIAKLSGRLDEIGEDWAIVDVQGVGYLVHCSARTLSALGEKGEACTVHTDLQVSENDMRL 86

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG++V + +LS ++  EL ++    ++  +A+  G+  K+
Sbjct: 87  LGFAESAERDWFRLLTQVQGVGSKVGLAILSALSTGELRDACAAGDAASVARANGVGPKL 146

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  +L       M+ V           S + +A+SAL NLG+    A  A
Sbjct: 147 AGRIVNELKDKVGALPG---GGMAGV--PMGAAAPAGSASADAVSALENLGFKPAIAAQA 201

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V     +    A +  +IR+AL+
Sbjct: 202 VARATAELGEDAPEGDLIRVALK 224


>gi|254487107|ref|ZP_05100312.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101]
 gi|214043976|gb|EEB84614.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101]
          Length = 221

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D+VLIDV+GV Y++YC  RTL+ L  +G+   LF +  +R+D ++L
Sbjct: 1   MIGKITGRIDYRAPDHVLIDVRGVGYLVYCSDRTLAALPGVGEAVALFTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    G+  KI
Sbjct: 61  FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK-------EQAHICSMPSFAIN------AISAL 167
           A R++ +LK KA  + ++ Q       +       E       P+ A N      A+SAL
Sbjct: 121 AQRVVLDLKDKAPGVMAMTQTLAEAHGEVEAVQVIEAPEAKRRPATAPNHSAQSEALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGYG   A  AV        + AD   +IR AL+ ++
Sbjct: 181 GNLGYGPGDAAGAVAQAAGDMPD-ADTPTLIRAALKLLA 218


>gi|296283076|ref|ZP_06861074.1| Holliday junction DNA helicase RuvA [Citromicrobium bathyomarinum
           JL354]
          Length = 209

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 8/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ +IDV GV Y+++C  RTL  LG  G    LF +  + ++ +RL
Sbjct: 11  MIAKLTGTLDATGPDWAVIDVGGVGYLVHCSTRTLDALGSEGGEARLFTDLQVSENDMRL 70

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL SVQGVG++VA+ +LS ++A E+  +    ++ ++A+  G+  K+
Sbjct: 71  LGFAEAAERDWFRLLTSVQGVGSKVALAILSVLSAGEVQAACASGDAAMVARANGVGPKL 130

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ KA +L            K  A        + +A+SAL NLG+    A  A
Sbjct: 131 AGRIVNELQDKAGALPVAPGGVAVAAPKGGA--------SADAVSALENLGFKPAIAAKA 182

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   + +    A + ++IR+AL+
Sbjct: 183 VAEAMGELGEGASEGELIRVALK 205


>gi|307294738|ref|ZP_07574580.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum
           L-1]
 gi|306879212|gb|EFN10430.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum
           L-1]
          Length = 202

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y++    RTL+ LG +G+  T+  E  + +D IRL
Sbjct: 1   MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSEDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL SVQGVG+RVA+ +LS +   EL  S+   +  +IA+  G+  K+
Sbjct: 61  VGFARAEERDWFRLLTSVQGVGSRVALAILSALEPAELHRSVATGDKAMIARANGVGPKL 120

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI  ELK K  A+   +              H       + +AISAL NLG+   +A+
Sbjct: 121 AQRIANELKDKIGAVPTPAGGVGGGFAAVSGGGH-------SADAISALQNLGFKPAEAS 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
           +AV +   +    A    ++RLALR
Sbjct: 174 SAVAAAEGELGEDASLDALVRLALR 198


>gi|159043653|ref|YP_001532447.1| Holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12]
 gi|189045752|sp|A8LHP9|RUVA_DINSH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157911413|gb|ABV92846.1| holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12]
          Length = 224

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 19/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +     D++++DV+GV Y++ C  RTL+ +   G    LF E  +R+D ++L
Sbjct: 1   MIGRLSGVLVYRGRDHIVLDVRGVGYVVQCSERTLAGMPAPGGPVALFTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+++W  LL SVQGVGA+ +M +LS +    +  +I L +   + +  G+  KI
Sbjct: 61  YGFPTLLEKEWHRLLTSVQGVGAKASMSILSTLGVDGVGRAIALGDWGALRKAQGVGPKI 120

Query: 121 ASRIMTELKGKA-----------ISLSSVVQQDMSC---VNKEQAHICSMPSFA---INA 163
           A R++ ELK K             +L  V++  M+    +    A   ++PS A     A
Sbjct: 121 AQRVVNELKDKGPEVMAMGGTLEAALDGVIEDGMAASEGIEPPSAARPAVPSAASDQAGA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SALVNLGYGQ +A +AV +     +    ++ IIR ALR ++
Sbjct: 181 LSALVNLGYGQGEAASAVATAAG--EGAVGETDIIRAALRLLA 221


>gi|148555055|ref|YP_001262637.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1]
 gi|166200267|sp|A5V883|RUVA_SPHWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148500245|gb|ABQ68499.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1]
          Length = 199

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 117/203 (57%), Gaps = 8/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     D+ ++DV GV Y+++C  RTLS +G+ G    LF E  +R+D I L
Sbjct: 1   MIARLRGVLAETSADHAVLDVGGVGYLVWCSARTLSAIGETGGDVLLFTEMQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F LL SVQGVG RVA+ +LS + A EL  ++   +  +IA+  G+  K+
Sbjct: 61  YGFGSAGERDSFRLLTSVQGVGGRVALAILSVLDAGELSRAVAGGDKAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   ++  +   +      +  + +      +A+SAL NLG+   +A+ A
Sbjct: 121 AMRIVNELKDKMGGVA--LGPGLGAAPAAKGGVST------DALSALANLGFRPAEASAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V + +++  + A    ++RLALR
Sbjct: 173 VGAAIEELGDGATLDAVVRLALR 195


>gi|329113836|ref|ZP_08242607.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter
           pomorum DM001]
 gi|326696846|gb|EGE48516.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter
           pomorum DM001]
          Length = 203

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 106/189 (56%), Gaps = 4/189 (2%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           +IDV GV Y++    RTL+ L    +   L +ET +R+D I L+GF+   +R+WF LL S
Sbjct: 18  VIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILLYGFMESAEREWFRLLTS 77

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           VQGVGA+VA+G+LS ++  ELV +++  +   + + PG+  ++A RI+TEL+ KA  +  
Sbjct: 78  VQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRLAERILTELRDKAGKMPG 137

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
                ++      A      S   +A+ AL  LG+ + +A   V  V+     +A    +
Sbjct: 138 GGSGGITI----PAMATPAGSIEADALMALAGLGFRRAEAAPVVRKVMDTHGAVATLDMV 193

Query: 198 IRLALRAIS 206
           IR +L+ ++
Sbjct: 194 IRDSLKDLA 202


>gi|83943911|ref|ZP_00956368.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           EE-36]
 gi|83845158|gb|EAP83038.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           EE-36]
          Length = 222

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 118/220 (53%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D++LIDV+GV Y++YC  RT++ L  +G+   LF +  +R+D ++L
Sbjct: 1   MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    G+  KI
Sbjct: 61  FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNK-----EQAHICSMPSFAIN------AISA 166
           A R++ +LK KA   ++++  + +    V       E A     P    N      A+SA
Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEATAEVIETAAPKRRPVAPPNQSAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG        V+    E   AD  Q+IR AL+ ++
Sbjct: 181 LGNLGYGP-GDAAGAVAQAAGEMPEADTPQLIRAALKLLA 219


>gi|87198447|ref|YP_495704.1| Holliday junction DNA helicase RuvA [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123722701|sp|Q2GBA3|RUVA_NOVAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|87134128|gb|ABD24870.1| Holliday junction DNA helicase RuvA [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 204

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 117/204 (57%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ +IDV GV Y+++C  +TL+ LG  GD   +  E  + +   RL
Sbjct: 1   MIAKLTGILDDTGPDWAVIDVNGVGYLVHCSAKTLTHLGLRGDKVVVHTEMQVSETDQRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R WF LL +VQGVG++VA+ +LS ++  EL  +    +S ++A+  G+  K+
Sbjct: 61  IGFTSAGERAWFRLLTAVQGVGSKVALAILSALSVEELQRACAHGDSAMVARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179
           ASRI+ ELK KA  L+       S V        + P  A  +A+SAL NLG+    A++
Sbjct: 121 ASRIVNELKDKAGGLAGYA----SPVGPGGEAFVAPPGNASADAVSALQNLGFKPAVASS 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV + +K+    A  + ++R+AL+
Sbjct: 177 AVAAAVKELGEDAGLNDLVRVALK 200


>gi|254460781|ref|ZP_05074197.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium
           HTCC2083]
 gi|206677370|gb|EDZ41857.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 222

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 120/217 (55%), Gaps = 15/217 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+    D+V++DV+GV Y++YC  RTL+ L + G+  +L+ +  +R+D ++L
Sbjct: 1   MIGKLSGRIDYRAADHVMMDVRGVGYMVYCSDRTLAGLPRAGEVVSLYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  +I L +   I    G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALADVTAIKAAKGVGPKT 120

Query: 121 ASRIMTELKGK------------AISLSSVVQQDMSCVNKEQAHICSMPSFA--INAISA 166
           A R++ ELK K            A ++  V   D   V +  A   S+PS +    A+SA
Sbjct: 121 AQRVVIELKDKAPGVMAMGGGTPATAMGEVPAADDFDVIETSAVKVSVPSASAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           L NLGY   +A +AV      +   A  S +IR AL+
Sbjct: 181 LSNLGYAPSEAASAVAEAAGADPE-ATTSALIRAALK 216


>gi|149915610|ref|ZP_01904136.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           AzwK-3b]
 gi|149810502|gb|EDM70345.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           AzwK-3b]
          Length = 223

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 30/225 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I+    D+VLIDV+GV Y++YC  RTL  L ++G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIDYRASDHVLIDVRGVGYLVYCSDRTLQSLPRVGEHTALYTDLVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    GI  K 
Sbjct: 61  FGFPTLIEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIALGDWNAVKAARGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI---------------- 164
           A R++ ELK K   L       M+      A   + PS A +A+                
Sbjct: 121 AQRVVNELKDKLPEL-------MAMGTTPTASAPAPPSDAEDAVIEPASLAAAPPPPRSD 173

Query: 165 ------SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
                 SAL NLGY   +A  AV    + +   A+ + +IR ALR
Sbjct: 174 AQAEALSALTNLGYAPGEAARAVAQAAESDPQ-AETAAMIRAALR 217


>gi|89053456|ref|YP_508907.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1]
 gi|123094354|sp|Q28TT0|RUVA_JANSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|88863005|gb|ABD53882.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1]
          Length = 223

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 20/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+ LIDV GV Y+++C  RTL+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYKGSDHALIDVGGVGYVVHCSDRTLAALPARGEVVALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  +++W  LL SVQGVGA+ +M +L  +       +I L ++  I   PG+  K+
Sbjct: 61  FGFLSPYEKEWHRLLTSVQGVGAKASMAILGTLGVEGAARAITLGDATAIKAAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSV---------------VQQDMSCVNKEQAHICSMPS--FAINA 163
           A R++ ELK KA ++ ++                 +  +     Q      P+      A
Sbjct: 121 AQRVVMELKDKAPAVMAMGGTLDDAMDDVVDDMPGESAAPAPAPQPRAPKRPASNAQAEA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SAL NLGYG   A  AV    +   N     ++IR ALR ++
Sbjct: 181 LSALQNLGYGPSDAAQAVAQAAESASNT---PELIRAALRLLA 220


>gi|220935403|ref|YP_002514302.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767396|sp|B8GUJ5|RUVA_THISH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219996713|gb|ACL73315.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 201

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L+DVQGV Y I  P+ T   L + G   TL    H+R+D   L
Sbjct: 1   MIGRLRGELVSKQPPFLLLDVQGVGYEIEAPLSTFYDLPEPGGQVTLHTHLHVREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +R  F  L  V GVGA++A+ +LS +TA+E    ++  +   + ++PGI  K 
Sbjct: 61  YGFASESERALFRSLIKVTGVGAKMALAILSGMTASEFSRCVMDGDVASLVRLPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +  SL + V        K  A     P    +A+SALV+LGY + Q  + 
Sbjct: 121 AERLVVEMRDRLGSLPAAVTL---TGGKPAAAAARAPDPVSDAVSALVSLGY-KPQEASR 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           ++S ++ E   ++D  +IRLAL+A
Sbjct: 177 LISAVEGEAERSED--LIRLALKA 198


>gi|83954484|ref|ZP_00963195.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83840768|gb|EAP79939.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 222

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D++LIDV+GV Y++YC  RT++ L  +G+   LF +  +R+D ++L
Sbjct: 1   MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    G+  KI
Sbjct: 61  FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNK-----EQAHICSMPSFAIN------AISA 166
           A R++ +LK KA   ++++  + +    V       E A     P    N      A+SA
Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEAAAEVIETAAPKRRPVAPPNQSAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG        V+    E   A+  Q+IR AL+ ++
Sbjct: 181 LGNLGYGP-GDAAGAVAQAAGEMPEAETPQLIRAALKLLA 219


>gi|326386113|ref|ZP_08207737.1| Holliday junction DNA helicase RuvA [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209338|gb|EGD60131.1| Holliday junction DNA helicase RuvA [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 206

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 115/203 (56%), Gaps = 1/203 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ +IDV GV Y+++   RTL+ LG  GD   +  E  + +  +RL
Sbjct: 1   MIAKLTGLLDDTGPDWAVIDVNGVGYLVHASARTLAHLGNRGDRVVIHTELQVSETDMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R WF LL  VQGVG++VA+ +LS +T  EL  +    +S ++A+  G+  K+
Sbjct: 61  IGFASAGERAWFRLLTVVQGVGSKVALAILSALTVDELQRACAGGDSAMVARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK KA  L+ +           +A + S  S + +A+SAL NLG+    A TA
Sbjct: 121 ASRIVNELKDKAGGLAGLSGGAGITAEPGEAPVVS-GSASADAVSALQNLGFKPAVAATA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   +++    A    ++R+AL+
Sbjct: 180 VTKAIEELGEDASLGDLVRVALK 202


>gi|302384291|ref|YP_003820114.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194919|gb|ADL02491.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 205

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E + LID  GV Y++ C  RTL  L   GD  TL V +   +D   R
Sbjct: 1   MIGRLRGVVAEIEEGHCLIDCAGVGYVVACGARTLGRLPAPGDEATLHVHSQWSEDAGPR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  +R+ F  L  +QGVG + A+ VL  +   EL  ++   +   I +  G+  K
Sbjct: 61  LYGFLARDERRAFTTLLGIQGVGPKAALSVLDVLPPGELAGAVARDDKAAIGRANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELKGK +   S     ++ V+ E A    +PS    A+SAL+ LG  +  A  
Sbjct: 121 LALRIVTELKGKPLGDVSFTPS-VAGVHAEVA--PPVPSVTGEAVSALLGLGVAEVNARR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV   L +  + A+ S +IR AL+ + 
Sbjct: 178 AVDQALIRLGDAAELSAVIRAALQELG 204


>gi|260426467|ref|ZP_05780446.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45]
 gi|260420959|gb|EEX14210.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45]
          Length = 221

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G IE   ED+VLIDV+GV YI+YC  R L+ L + G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIEYKGEDHVLIDVRGVGYIVYCSDRVLASLPRPGEAAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++++WF LL +VQGVGA+ ++ +L  +    +  +I L ++  I    GI  K 
Sbjct: 61  YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDANAIKAARGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHI----------CSMPSFAINAISAL 167
             R++ ELK KA  + ++    ++    E    A I           S       A+SAL
Sbjct: 121 GLRVVNELKDKAPMVMAMGAGTIASAGPEVIDDAPIPSAPAQAQAAPSSAPAQSEALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGY   +A  AV     +    A  +++IR ALR ++
Sbjct: 181 SNLGYAPGEAAAAVAQAAGEAPT-ATTAELIRAALRLLA 218


>gi|84501645|ref|ZP_00999817.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis
           HTCC2597]
 gi|84390266|gb|EAQ02825.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis
           HTCC2597]
          Length = 220

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I+    D+VLIDV+GV Y+++   RTL+ L   G+   L+ E  +R+D ++L
Sbjct: 1   MIGRLAGRIDMRGPDHVLIDVRGVGYVVFVSDRTLATLPGAGEAAALYTELIVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++++WF LL SVQGVGA+ A+ +L  + A  L  +I L +   +    GI  K 
Sbjct: 61  YGFPTLVEKEWFRLLTSVQGVGAKGALAILGALGAEGLGRAIALGDQASVKAAKGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------------MPSFAINAISAL 167
           A RI+ ELK KA ++ ++     +     +  +                 S    A+SAL
Sbjct: 121 AQRIVLELKDKAPAVMAMGGAAPTSAAPAETEVVEPVPAPAATAAPASTASAQAEALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGYG  +A  AV     +    AD + +IR ALR ++
Sbjct: 181 GNLGYGPSEAAAAVAEAAGETPR-ADTAALIRSALRRLA 218


>gi|114798884|ref|YP_758880.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC
           15444]
 gi|114739058|gb|ABI77183.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC
           15444]
          Length = 207

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 3/178 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG++KG +  +  D+VLIDV GV Y+     R L+ L + GD  T  +ET + +  I L
Sbjct: 2   IIGRLKGEVAAIGLDHVLIDVNGVGYVALAGTRLLARL-QTGDAITAHIETRVTESSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F +D +R WF+ LQ V GV  + A+ +L  ++  +++++I L ++    +  GI  K+
Sbjct: 61  FAFATDEERAWFVRLQDVPGVAGKSALAILDGLSPADIMDAIALGDAGAFTRAKGIGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK-EQAHICSMPSFAIN-AISALVNLGYGQDQ 176
             RI+TEL GKA  L    + +++ V     A   S  + A   A+SALVNLGY Q +
Sbjct: 121 GERIVTELAGKAPPLGRFGKFEVAAVAGLASAQPASAATGARGEAVSALVNLGYSQSE 178


>gi|163745818|ref|ZP_02153177.1| Holliday junction DNA helicase motor protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380563|gb|EDQ04973.1| Holliday junction DNA helicase motor protein [Oceanibulbus
           indolifex HEL-45]
          Length = 225

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 18/220 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+    D+VLIDV+GV Y++Y   RT++ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLSGRIDYRAADHVLIDVRGVGYLVYVSDRTMAALPSVGEVVALYTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    GI  KI
Sbjct: 61  FGFQTLVEKEWHRLLTSVQGVGAKASLAILGTLGPDGVSRAIALGDWNAVKAAKGIGPKI 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMS------------CVNKEQAHICSMPSFAI--NA 163
           A R++ +LK KA   ++++  V   M                  +A   + P+ +    A
Sbjct: 121 AQRVVLDLKDKAPGVMAMTGTVADAMGEAEAAADESVIEAATPRRAPKPAAPNASAQSEA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           +SAL NLGYG        V+    E   AD   +IR AL+
Sbjct: 181 LSALGNLGYGP-GDAAGAVAQAAGEMPDADTPTLIRAALK 219


>gi|149185526|ref|ZP_01863842.1| probable holliday junction DNA helicase protein [Erythrobacter sp.
           SD-21]
 gi|148830746|gb|EDL49181.1| probable holliday junction DNA helicase protein [Erythrobacter sp.
           SD-21]
          Length = 201

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 114/203 (56%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y+++C  +TLS LG+ G+ CT++ +  + ++ +RL
Sbjct: 1   MIAKLKGLLDETGADWAVIDVSGVGYLVHCSTKTLSKLGEKGEACTVYTDLQVSENDMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG++VA+ +LS ++  E+ ++    ++  +A+  G+  K+
Sbjct: 61  LGFAEAAERDWFRLLTQVQGVGSKVALAILSALSTGEVQQACSNGDAATVARAQGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +L        +          +      +A+SAL NLG+    A  A
Sbjct: 121 AGRIVNELKDKAGALPGGGVGGGTAPATPAGGASA------DAVSALENLGFKPAVAARA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V +   +    A +  +IR+AL+
Sbjct: 175 VAAAQGELGEGASEGDLIRVALK 197


>gi|259417974|ref|ZP_05741893.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B]
 gi|259346880|gb|EEW58694.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B]
          Length = 229

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 87/135 (64%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+V+IDV+GV YI+YC  RTL+ L  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRAPDHVMIDVRGVGYIVYCSDRTLASLPSVGEAVQLYTELLVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S ++++W  LL SVQGVGA+V++ +LS +    +  +I L +   +    G+  K 
Sbjct: 61  FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISL 135
           A RI+ +LK KA S+
Sbjct: 121 AQRIVLDLKDKAPSV 135


>gi|189183542|ref|YP_001937327.1| Holliday junction DNA helicase RuvA [Orientia tsutsugamushi str.
           Ikeda]
 gi|229560111|sp|B3CRA9|RUVA_ORITI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189180313|dbj|BAG40093.1| holliday junction DNA helicase RuvA [Orientia tsutsugamushi str.
           Ikeda]
          Length = 205

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 122/208 (58%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           MI K+KG ++ + + Y++ID+ GV Y +Y   +TL  L K  G   +LF+ETH+R+D+I 
Sbjct: 1   MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL + ++  F +LQSV G+G ++A+ +LS +T  +L  +I  QN   +  I G+  K
Sbjct: 61  LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  R+M EL+ K  +++++        +S  +    +I S      +AI+AL+ LG  + 
Sbjct: 121 LIDRLMIELRDKVANINTIANNTSLATLSTDSNTHDNILS------DAITALIALGISRA 174

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
           +AT  +  +     +I+ + +++R AL+
Sbjct: 175 EATQILSDIYALSPSISVN-ELVRTALQ 201


>gi|148284809|ref|YP_001248899.1| Holliday junction DNA helicase motor protein [Orientia
           tsutsugamushi str. Boryong]
 gi|166230578|sp|A5CEJ4|RUVA_ORITB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146740248|emb|CAM80579.1| Holliday junction DNA helicase [Orientia tsutsugamushi str.
           Boryong]
          Length = 205

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 109/183 (59%), Gaps = 11/183 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           MI K+KG ++ + + Y++ID+ GV Y +Y   +TL  L K  G   +LF+ETH+R+D+I 
Sbjct: 1   MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL + ++  F +LQSV G+G ++A+ +LS +T  +L  +I  QN   +  I G+  K
Sbjct: 61  LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  R+M EL+ K  +++++        +S  +    +I S      +AI+AL+ LG  + 
Sbjct: 121 LIDRLMIELRDKVANINTIANNTSLAILSTDSNTHDNILS------DAITALIALGISRA 174

Query: 176 QAT 178
           +AT
Sbjct: 175 EAT 177


>gi|241761371|ref|ZP_04759459.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374278|gb|EER63775.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 213

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D  +IDV GV Y++    R L    +I    T+ +ET +R+D I L
Sbjct: 1   MIARLVGFLVEKNSDSAIIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S L+R WF LL SVQGVG + A+ +L+ +T   +  +I   +  +I +  GI  KI
Sbjct: 61  FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ ELK K  AI+L S  + D   V   ++  A      +F  +A+SAL+NLG+   
Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
           +A   V    ++  + A    ++RLALR
Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR 208


>gi|331016439|gb|EGH96495.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 202

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H+  + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHVDPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|56551051|ref|YP_161890.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|81355594|sp|Q5NR75|RUVA_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56542625|gb|AAV88779.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 213

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D  +IDV GV Y++    R L    +I    T+ +ET +R+D I L
Sbjct: 1   MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S L+R WF LL SVQGVG + A+ +L+ +T   +  +I   +  +I +  GI  KI
Sbjct: 61  FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ ELK K  AI+L S  + D   V   ++  A      +F  +A+SAL+NLG+   
Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFMADAVSALLNLGFKPA 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
           +A   V    ++  + A    ++RLALR
Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR 208


>gi|330872653|gb|EGH06802.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 202

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H   + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V +K+ + AD   +IR AL+ +
Sbjct: 180 VSAVKEKDLSSAD---LIRRALKGM 201


>gi|260753286|ref|YP_003226179.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552649|gb|ACV75595.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 213

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D  +IDV GV Y++    R L    +I    T+ +ET +R+D I L
Sbjct: 1   MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S L+R WF LL SVQGVG + A+ +L+ +T   +  +I   +  +I +  GI  KI
Sbjct: 61  FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRSNGIGPKI 120

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ ELK K  AI+L S  + D   V   ++  A      +F  +A+SAL+NLG+   
Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
           +A   V    ++  + A    ++RLALR
Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR 208


>gi|294010085|ref|YP_003543545.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium
           japonicum UT26S]
 gi|292673415|dbj|BAI94933.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium
           japonicum UT26S]
          Length = 202

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y++    RTL+ LG +G+  T+  E  +  D IRL
Sbjct: 1   MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSDDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG+RVA+ +LS +   EL  ++   +  +IA+  G+  K+
Sbjct: 61  VGFARAEERDWFRLLTGVQGVGSRVALAILSALEPVELHRAVAAGDKAMIARANGVGPKL 120

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI  ELK K  A  + +              H       + +AISAL NLG+   +A+
Sbjct: 121 AQRIANELKDKIGAAPMPAGAVGAGFAALPTGGH-------SADAISALQNLGFKPAEAS 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            AV +  ++    A    ++RLALR
Sbjct: 174 IAVAAAEEELGEDASLDALVRLALR 198


>gi|258543669|ref|YP_003189102.1| Holliday junction DNA helicase RuvA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634747|dbj|BAI00723.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637803|dbj|BAI03772.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640857|dbj|BAI06819.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643912|dbj|BAI09867.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646967|dbj|BAI12915.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650020|dbj|BAI15961.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653010|dbj|BAI18944.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656064|dbj|BAI21991.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 202

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 5/186 (2%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           +IDV GV Y++    RTL+ L    +   L +ET +R+D I L+GF+   +R+WF LL S
Sbjct: 18  VIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILLYGFMESAEREWFRLLTS 77

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           VQGVGA+VA+G+LS ++  ELV +++  +   + + PG+  ++A RI+TEL+ KA  +  
Sbjct: 78  VQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRLAERILTELRDKAGKMPG 137

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
                        A      S   +A+ AL  LG+ + +A   V  V+      A    +
Sbjct: 138 GGGGITIPAMATPAG-----SIEADALMALAGLGFRRAEAAPVVRKVMDAHGAAATLDLV 192

Query: 198 IRLALR 203
           IR +L+
Sbjct: 193 IRDSLK 198


>gi|330964824|gb|EGH65084.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 202

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H   + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|229592301|ref|YP_002874420.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens SBW25]
 gi|312962759|ref|ZP_07777247.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|259495652|sp|C3JYS8|RUVA_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229364167|emb|CAY51821.1| holliday junction helicase subunit B [Pseudomonas fluorescens
           SBW25]
 gi|311282976|gb|EFQ61569.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 203

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 115/205 (56%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPITLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR +F  L  + GVG ++A+ ++S +   ELV ++  Q++  + ++PG+  K 
Sbjct: 61  YGFIGKRDRDFFRELIRLNGVGPKLALALMSSLEVDELVRAVSAQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +   V        N+       + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEVVPSMFALVPNQPDMPAGQVASAESDAVSALISLGYKPQEASKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  K+KN++ +  +IR AL+ +
Sbjct: 181 VSAI--KDKNLSSED-MIRRALKGM 202


>gi|28871123|ref|NP_793742.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969185|ref|ZP_03397324.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato T1]
 gi|301384820|ref|ZP_07233238.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063526|ref|ZP_07255067.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato K40]
 gi|302130610|ref|ZP_07256600.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999572|sp|Q87Y34|RUVA_PSESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28854373|gb|AAO57437.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926183|gb|EEB59739.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato T1]
          Length = 202

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H   + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHADPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|99082212|ref|YP_614366.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040]
 gi|99038492|gb|ABF65104.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040]
          Length = 229

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 87/135 (64%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+V+IDV+GV YI+YC  RTL+ L  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKLTGRLDYKTPDHVMIDVRGVGYIVYCSDRTLASLPAVGEAVQLYTELLVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S ++++W  LL SVQGVGA+V++ +LS +    +  +I L +   +    G+  K 
Sbjct: 61  FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISL 135
           A RI+ +LK KA S+
Sbjct: 121 AQRIVLDLKDKAPSV 135


>gi|282164971|ref|YP_003357356.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella
           paludicola SANAE]
 gi|282157285|dbj|BAI62373.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella
           paludicola SANAE]
          Length = 196

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 116/204 (56%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQIR 59
           MI  ++G +E    + ++IDV GV Y +  P      +   G+ C +F+ T+ R+ D   
Sbjct: 1   MIAHLEGRLEYKGHERIVIDVGGVGYDVRVPTHLYDLIPAEGERCKVFIHTYFREEDGTS 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  DR++F LL +V G+G +VA+G++S ITA++L E+I+++++K + ++ G+  K
Sbjct: 61  LYGFTTWQDREFFKLLMTVSGIGPKVALGIMSSITASDLAEAIVVEDAKALTRVNGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A R++ ELK K          +MS  N+ +     M S   +A SALV LGY +  A+ 
Sbjct: 121 MAQRLILELKDKV--------AEMSIENRAKKPGADMTSE--DATSALVALGYSRQAASA 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV         ++   ++I+ +LR
Sbjct: 171 AVARARDASPGLSKVEELIKTSLR 194


>gi|299135919|ref|ZP_07029103.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8]
 gi|298602043|gb|EFI58197.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8]
          Length = 198

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I     + V++D  GV Y +   I T + LG  G    L V TH+R+D + L
Sbjct: 1   MIAYLRGRILSKASNAVIVDCNGVGYELAISITTFTELGAEGAEAKLHVHTHVREDALAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L ++ G+G ++A+ VLS I+A  LV +I   +   + +IPGI  K 
Sbjct: 61  FGFAELTEKRLFEKLLTISGIGPKLAITVLSGISAERLVGAIRAGDHATLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K          DM     E     S+ + A + +SALVNLGY +  A  A
Sbjct: 121 AERVVLELKDK--------LDDMVGSTPETGARFSLGTVADDVLSALVNLGYARPVAQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +  K      D  Q+ R A+ A+
Sbjct: 173 VETAAKDAAVAGDFEQLFRAAMSAV 197


>gi|254451002|ref|ZP_05064439.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           238]
 gi|198265408|gb|EDY89678.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           238]
          Length = 231

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 24/226 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +E    D+VLIDV+GV YI++   R ++ L ++G+  +L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRLEYRAIDHVLIDVKGVGYIVFVSDRVMATLPRVGEGVSLYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  SI + +   +A   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWAAVATAKGVGPKT 120

Query: 121 ASRIMTELKGKA----------------------ISLSSVVQQDM-SCVNKEQAHICSMP 157
           A +++ +LK KA                      +S  +    DM + V++         
Sbjct: 121 AKKVILDLKDKAHGVMAMAGTAAGAAPAAGGGASVSADAETDTDMHAVVDRYDGTAAGNG 180

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           +     +SAL NLGYG   A  AV      E + AD + +IR AL+
Sbjct: 181 AAQSETLSALSNLGYGPSDAAGAVAQA-AVENDGADTATLIRAALK 225


>gi|145590058|ref|YP_001156655.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|189045760|sp|A4T027|RUVA_POLSQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145048464|gb|ABP35091.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 193

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +  ++   +L+D QGV Y I  P+ TL  L ++    TL     +R+D  +L
Sbjct: 1   MIGRIQGTLVSVHPPRLLVDCQGVGYEIDVPMSTLYQLPEVNQKITLLTHFQVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++++R+ F  L  + GVG+R A+ VLS ++  EL ++I LQ +  + Q+PGI  K 
Sbjct: 61  FGFATEIEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELKGK       +  D+     +   I +        + AL++LGY + +A  A
Sbjct: 121 AERLCLELKGK-------LAPDLGITGGKPQAIEA----TSEVLQALLSLGYSEKEALLA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   E +++D    IR+ L+ +S
Sbjct: 170 LKQI-PPETSVSDG---IRMGLKYLS 191


>gi|159899035|ref|YP_001545282.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|229560066|sp|A9AZL0|RUVA_HERA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|159892074|gb|ABX05154.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 197

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ + +D V+IDV GV   I  P   L+ +G IGD   L+   H+R+D + L
Sbjct: 1   MIASVRGVVQLIGQDQVVIDVHGVGLAIAVPRTVLATIGAIGDTAQLYTHLHVREDMLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S   R  F LL  V G+G +VA+ +LS  T  EL  +I  ++  +++++PGI  K 
Sbjct: 61  FGFSSPAQRALFELLLGVSGIGPKVALALLSAATPEELQHAIAREDITMLSKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINA--ISALVNLGYGQDQA 177
           A+R++ ELKGK   ++++  Q           + + P   A+N   I  L +LGY   +A
Sbjct: 121 AARLVLELKGK-FGVATISPQ-----------LSTNPGLLALNTELIDILTSLGYSTTEA 168

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
             A+ ++       AD  + +RLAL+
Sbjct: 169 QAALNALPADAP--ADTEERLRLALQ 192


>gi|225410073|ref|ZP_03761262.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme
           DSM 15981]
 gi|225042421|gb|EEG52667.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme
           DSM 15981]
          Length = 207

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 114/209 (54%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  + ED ++++  GV   I+ P+  L  L  IG   T++    +R+D + L
Sbjct: 1   MISYIKGPLTAIEEDVIVVEAGGVGMGIHVPLSVLDRLPGIGREVTVYTYFQVREDAMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  DR  F  L  V GVG + A+G+LS +T  +L  +I+  ++K I++ PGI  K 
Sbjct: 61  YGFLNRQDRDMFRQLIGVNGVGPKAALGILSTMTPDDLRMAIVTGDAKAISRAPGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHI--CSMPSFAINAISALVNLGYGQDQA 177
           A R++ +LK K IS+  ++    + C     A +   SM   A  A+ ALV LGY   +A
Sbjct: 121 AQRLILDLKDK-ISMEEMLGNLALPCDGGASAALGTASMGEAAKEAVQALVALGYSNMEA 179

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV  V   E   A+D  +++ +LR +S
Sbjct: 180 NKAVKQVEVTETMTAED--VLKASLRYLS 206


>gi|310816584|ref|YP_003964548.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium
           vulgare Y25]
 gi|308755319|gb|ADO43248.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium
           vulgare Y25]
          Length = 218

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 10/182 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G I     D +L+DV+GV YII+   R ++ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGWLSGRIIEKSGDQILLDVRGVGYIIHVSDRVMASLPGVGEAVALYTDLLVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +++W  LL  VQGVGA+ A+ ++  +    L  ++ L +   IA+  GI  K 
Sbjct: 61  FGFTSRTEKEWHKLLMGVQGVGAKAALAIMGALGGDGLSRALALGDWSSIAKAKGIGPKT 120

Query: 121 ASRIMTELKGKAI----------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
           A R++ ELKGKA           SL +V++ D             + +   +A+SAL NL
Sbjct: 121 AQRVVMELKGKAPTVMAMSGGAESLDAVIEDDGPAPKPAARRARPVSNAQPDALSALGNL 180

Query: 171 GY 172
           GY
Sbjct: 181 GY 182


>gi|119383447|ref|YP_914503.1| Holliday junction DNA helicase motor protein [Paracoccus
           denitrificans PD1222]
 gi|166230580|sp|A1AZW3|RUVA_PARDP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119373214|gb|ABL68807.1| Holliday junction DNA helicase RuvA [Paracoccus denitrificans
           PD1222]
          Length = 223

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 102/187 (54%), Gaps = 15/187 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I    +D+VLIDV+GV YI++   RT + L   G    L+ E  +R+D ++L
Sbjct: 1   MIGRIAGVILHRAQDHVLIDVRGVGYIVHVSERTAANLPPAGQATALYTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+++W  LL SVQGVGA+VA+ +L  +    L  ++ L +   + + PG+  K+
Sbjct: 61  FGFPTLLEKEWHRLLTSVQGVGAKVALAILGTLGPDGLSRALALGDWSALRKAPGVGPKL 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQ------------AHICSMPSFAINAIS 165
           A R++ ELK KA   ++L   +  D   + + +                S      +A+S
Sbjct: 121 AQRVVMELKDKAPAVMALGGALTVDPGPLPEVELVEAAVPAPVPAKAAPSSAQATADALS 180

Query: 166 ALVNLGY 172
           AL NLGY
Sbjct: 181 ALGNLGY 187


>gi|257487010|ref|ZP_05641051.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009348|gb|EGH89404.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 202

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+       S+ S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAESVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|104783073|ref|YP_609571.1| Holliday junction DNA helicase RuvA [Pseudomonas entomophila L48]
 gi|123079106|sp|Q1I6E8|RUVA_PSEE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|95112060|emb|CAK16787.1| holliday junction helicase subunit A [Pseudomonas entomophila L48]
          Length = 205

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 115/207 (55%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEPVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++ V+ ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASVLVRVPGVGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK   KA   S  +    + V+     + S  S   +A+SALV+LGY   +A+
Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEAS 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+ ++  K+K      ++IR +L+ +
Sbjct: 178 KAIAAI--KDKAGLSSEELIRRSLKGM 202


>gi|145636553|ref|ZP_01792221.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittHH]
 gi|145270378|gb|EDK10313.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittHH]
          Length = 204

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 106/211 (50%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-------AISALVNLGYG 173
           A R++ ELKGK      + Q D      E  HI S+PS   +       AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGIKQSDFFV---ESTHIRSVPSIEPHTENSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A   V  V K E       Q+IR AL+A
Sbjct: 175 PSEAEKMVKRVAKPE---LTSEQVIREALKA 202


>gi|114765389|ref|ZP_01444504.1| Holliday junction DNA helicase motor protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542232|gb|EAU45262.1| Holliday junction DNA helicase motor protein [Roseovarius sp.
           HTCC2601]
          Length = 224

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 83/132 (62%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G IE   ED++LIDV+GV Y++YC  R L+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIEYKGEDHLLIDVRGVGYVVYCSDRVLAGLPGPGEAAALYTDLMVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++++WF LL +VQGVGA+ ++ +L  +    +  +I L +   I    GI  K 
Sbjct: 61  YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDGTAIKAAKGIGPKT 120

Query: 121 ASRIMTELKGKA 132
           A R++ ELK KA
Sbjct: 121 AQRVVNELKDKA 132


>gi|237800218|ref|ZP_04588679.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023075|gb|EGI03132.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 202

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G+I      ++++DV GV Y +  P+ TL  L  +G+  TL+    +R+D   L
Sbjct: 1   MIGRLRGSIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLYTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  + +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEA-LPGTFALVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|149203738|ref|ZP_01880707.1| Holliday junction DNA helicase motor protein [Roseovarius sp.
           TM1035]
 gi|149142855|gb|EDM30897.1| Holliday junction DNA helicase motor protein [Roseovarius sp.
           TM1035]
          Length = 220

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 13/218 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I+    D+VLIDV+GV Y++YC  RTLS L  +G    L+ +  +R+D ++L
Sbjct: 1   MIGRVAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPAVGGMAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I + +   +    GI  K 
Sbjct: 61  FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIAIGDWNSVTAAKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSV------------VQQDMSCVNKEQAHICSMPSFAINAISALV 168
           A R++ ELK KA  + ++              + +   +     +   P     A+SAL 
Sbjct: 121 AQRVVNELKDKAPLVMAMGAAPAPMPAAPDTDEVIETASVPTPPVPPSPGAQAEALSALT 180

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           NLGY   +A  AV  V   E   A  +++IR ALR ++
Sbjct: 181 NLGYTPGEAAGAVAQV-AGETPEATTAELIRAALRRLA 217


>gi|110801789|ref|YP_699225.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101]
 gi|122956588|sp|Q0SRN2|RUVA_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110682290|gb|ABG85660.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101]
          Length = 201

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 8/189 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+GD   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYRIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K 
Sbjct: 61  YGFTTKEELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQA 177
           A RI+ ELK   K   L+S  +Q +  +N    +     SF IN  +SAL+ LGY + +A
Sbjct: 121 AQRIILELKDKLKPDELTSEEEQLIEGINDNSDY-----SFNINETLSALMALGYTEKEA 175

Query: 178 TTAVVSVLK 186
             A+  V K
Sbjct: 176 QKALEKVDK 184


>gi|197106547|ref|YP_002131924.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum
           HLK1]
 gi|229560113|sp|B4R9Z1|RUVA_PHEZH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|196479967|gb|ACG79495.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum
           HLK1]
          Length = 204

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 109/204 (53%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVET-HMRQDQIR 59
           MIG+++G +  + E+  LIDV GV Y++ C  RTLS L  +G+   + VE+    Q  + 
Sbjct: 1   MIGRLRGLVAEVGEEDALIDVMGVGYVVRCGSRTLSRLPAVGEETVIHVESVFGEQTGVT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R+ F+ L+++QGVG + A+ VL  +   EL  ++  ++   +A+  G+  K
Sbjct: 61  LYGFLGRDERRAFVTLRTIQGVGPKAALAVLDVLAPPELAAAVAREDKAAVARANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+ ELK K IS   V          +   +    S A  A++AL+ LG  + QA  
Sbjct: 121 LAQRIVVELKDKPISDGPVAAFHAQATTPQPIKV----SAAGEAVAALMGLGIAEPQARR 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V S   +    A+   +I+ AL+
Sbjct: 177 VVESAALRLGEEAEPPALIKAALQ 200


>gi|254360614|ref|ZP_04976763.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           PHL213]
 gi|153091154|gb|EDN73159.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           PHL213]
          Length = 201

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK      + Q D    V+ EQ    + P  A  A+ AL+ LGY    A  
Sbjct: 121 AERLLVELKGK---FKGMAQSDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +  V    K+ A   Q+IR AL+
Sbjct: 178 MIKKV---NKSGATSEQLIREALK 198


>gi|33594301|ref|NP_881945.1| Holliday junction DNA helicase motor protein [Bordetella pertussis
           Tohama I]
 gi|33602977|ref|NP_890537.1| Holliday junction DNA helicase motor protein [Bordetella
           bronchiseptica RB50]
 gi|44888431|sp|Q7VTT9|RUVA_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888438|sp|Q7WGB6|RUVA_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33564376|emb|CAE43681.1| holliday junction DNA helicase [Bordetella pertussis Tohama I]
 gi|33568608|emb|CAE34366.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50]
 gi|332383712|gb|AEE68559.1| Holliday junction DNA helicase RuvA [Bordetella pertussis CS]
          Length = 190

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV GV Y I  P+ TL  L + G   TLF    +R+D   L
Sbjct: 1   MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++  EL ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK   L + +       +  Q+ I          ++AL+ LGY   ++  A
Sbjct: 121 AERLLLEMRGK---LGADIGATPHAASGHQSDI----------LNALLALGYSDKESQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LKK  +  D S+ IRLAL+A+
Sbjct: 168 ----LKKLPDGVDVSEGIRLALKAL 188


>gi|289626496|ref|ZP_06459450.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650942|ref|ZP_06482285.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868612|gb|EGH03321.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 202

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAETDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|297170981|gb|ADI21996.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           myxobacterium HF0200_01L06]
          Length = 202

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       +++DV GV Y +  P+ T + L   G   +L+V TH+R+D   L
Sbjct: 1   MIARLEGTLFEKTPTRIVVDVSGVGYELSVPLSTFATLPDEGKTVSLWVHTHVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F LL     VG R+A  +LS I    L +++   + KV+  +PGI  K+
Sbjct: 61  YGFATTRERDVFHLLLRANRVGPRLAQTILSGIDPAALCDALGRGDVKVLRGVPGIGPKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+  A  L+  +    S    E   +   P  A  A+SAL+NLGY + +A   
Sbjct: 121 AERMVVELRDAASELAGALG---SAGPSEGRPV--RPDPAEEALSALLNLGYPRSKAERT 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + + + +    A   Q+IR ALR++S 
Sbjct: 176 IEAAIGETGEDASIEQVIRAALRSLSA 202


>gi|78221965|ref|YP_383712.1| Holliday junction DNA helicase RuvA [Geobacter metallireducens
           GS-15]
 gi|123729330|sp|Q39XN7|RUVA_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78193220|gb|ABB30987.1| Holliday junction DNA helicase subunit RuvA [Geobacter
           metallireducens GS-15]
          Length = 199

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D ++IDV GV Y +  P  T   L   G   +L + TH+++D I L
Sbjct: 1   MIARLTGMLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPDEGKTVSLSIYTHVKEDAISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++++F +L SV G+G ++A  +LS I   EL  +I+  N   ++ IPGI  K 
Sbjct: 61  FGFRTVAEKEFFQVLISVSGIGPKMARDILSNIQPDELAGAILQGNLVRLSSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ ELK K      V + D++   KE A   + P  A +  SALVNLGY +
Sbjct: 121 AERLVLELKEK------VRKMDVAPSTKEAAPSEAPPEVADDVASALVNLGYKE 168


>gi|261493369|ref|ZP_05989895.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496635|ref|ZP_05993015.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307838|gb|EEY09161.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311013|gb|EEY12190.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 201

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK      + Q D    V+ EQ    + P  A  A+ AL+ LGY    A  
Sbjct: 121 AERLLVELKGK---FKRMAQSDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +  V    K+ A   Q+IR AL+
Sbjct: 178 MIKKV---NKSGATSEQLIREALK 198


>gi|145632564|ref|ZP_01788298.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 3655]
 gi|229845014|ref|ZP_04465151.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 6P18H1]
 gi|144986759|gb|EDJ93311.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 3655]
 gi|229812148|gb|EEP47840.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 6P18H1]
          Length = 204

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 105/210 (50%), Gaps = 16/210 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-------AISALVNLGYG 173
           A R++ ELKGK      V Q D      E  HI S+PS   +       AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPSVPSIEPSVENSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALR 203
             +A   V  V K E       Q+IR AL+
Sbjct: 175 PSEAEKMVKRVAKPE---LTSEQVIREALK 201


>gi|260431115|ref|ZP_05785086.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414943|gb|EEX08202.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 223

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 16/221 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+    D++LIDV+GV YI+YC  RT++ L  +G+  +L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRIDYRAADHLLIDVRGVGYIVYCSDRTMAALPGVGEAVSLYTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFLSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWGAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----------- 166
           A RI+ +LK KA   +++   V + M     E           + A              
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPVAEVVEPADPAPAPVRAPKPGAGAASAGALS 180

Query: 167 -LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            L NLGYG  +A +AV        + A ++++IR AL+ ++
Sbjct: 181 ALSNLGYGPSEAASAVAEAAANLPD-AGEAELIRAALKLLA 220


>gi|171464161|ref|YP_001798274.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|229560114|sp|B1XS25|RUVA_POLNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171193699|gb|ACB44660.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 193

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 23/210 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +  ++   +L+D QG+ Y +  P+ TL  L + G   TL     +R+D  +L
Sbjct: 1   MIGRIQGTLVSVHPPRLLVDCQGISYEVDVPMSTLYQLPQAGQKITLLTHFQVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R+ F  L  + GVG+R A+ VLS ++  EL ++I LQ +  + Q+PGI  + 
Sbjct: 61  FGFATETEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKRT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-NKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R+  ELKGK       +  D+     K QA   S        + AL+ LGY + +A  
Sbjct: 121 AERLCLELKGK-------LAPDLGVAGGKPQAIETSS-----EVLQALLALGYSEKEALL 168

Query: 180 AVVSVLKKEKNIADDSQI---IRLALRAIS 206
           A+       K I  D+ I   IR+ L+ +S
Sbjct: 169 AL-------KQIPADTSISDGIRMGLKYLS 191


>gi|86139156|ref|ZP_01057726.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193]
 gi|85824000|gb|EAQ44205.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193]
          Length = 229

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV Y++YC  RT+  L  +G+  TL+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRTADHVLIDVRGVGYLVYCSERTMMTLPGVGEPVTLYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFTSLVEKEWHRLLTSVQGVGAKVSLAILGTLGPDGVSRAIALGDWGSVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAIS----------------LSSVVQQDMSCVNKEQAH-----ICSMPSF 159
           A RI+ +LK KA                  L +VV+       K+ A           + 
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGSLPDAIEGADLEAVVEPVEPAAPKKTARKAASKPSGAAAA 180

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +  A+SAL NLGY    A +AV     +  + AD+S +IR ALR ++
Sbjct: 181 SAGALSALGNLGYSPSDAASAVAEAAGENPD-ADESALIRAALRLLA 226


>gi|289674670|ref|ZP_06495560.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           syringae FF5]
 gi|302187157|ref|ZP_07263830.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           syringae 642]
 gi|330950609|gb|EGH50869.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae Cit 7]
          Length = 202

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|126737218|ref|ZP_01752953.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           SK209-2-6]
 gi|126721803|gb|EBA18506.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           SK209-2-6]
          Length = 228

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 21/226 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +D++LIDV GV YI+YC  RTL+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRTQDHILIDVHGVGYIVYCSERTLAALPGTGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFTSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNK---EQAHICSMPSFAINA----------- 163
           A RI+ +LK KA   +++   V   M        E+A   +  S    A           
Sbjct: 121 AQRIVLDLKDKAPAVMAMGGSVADAMDGPGLEVIEEAEPAATKSARKTAPKKPSGAAAAS 180

Query: 164 ---ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              +SAL NLGYG   A  AV        + AD++++IR ALR ++
Sbjct: 181 AGALSALGNLGYGPSDAAAAVAEAAATYPD-ADEAELIRAALRLLA 225


>gi|26987951|ref|NP_743376.1| Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440]
 gi|148546488|ref|YP_001266590.1| Holliday junction DNA helicase RuvA [Pseudomonas putida F1]
 gi|37999646|sp|Q88NJ1|RUVA_PSEPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230586|sp|A5VZU6|RUVA_PSEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24982663|gb|AAN66840.1|AE016312_11 Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440]
 gi|148510546|gb|ABQ77406.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas putida F1]
 gi|313497567|gb|ADR58933.1| RuvA [Pseudomonas putida BIRD-1]
          Length = 205

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK   KA   S  +    + V+     + S  S   +A+SALV+LGY   +A+
Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEAS 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+ ++  K+K      ++IR +L+ +
Sbjct: 178 KAIAAI--KDKAGLSSEELIRRSLKGM 202


>gi|254419140|ref|ZP_05032864.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3]
 gi|196185317|gb|EDX80293.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3]
          Length = 205

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E   LID  GV Y++ C  RTL  L   GD  T+ V +   +D   R
Sbjct: 1   MIGRLRGVLAEVGEADCLIDCAGVGYVVSCGARTLGRLPAPGDEATVHVHSQWSEDAGPR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  +R+ F  L ++QGVG + A+ VL  +   EL  ++  ++   +A+  G+  K
Sbjct: 61  LYGFLTRDERRAFTTLLAIQGVGPKAALAVLDVLPPGELAGAVAREDKAAVARANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELKGK +   S        V+ E A     PS    A+SAL+ LG  +  A  
Sbjct: 121 LALRIVTELKGKPLGDVSFAPT-APGVHVEIAP--PPPSLTGEAVSALLGLGVAEVNARR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV   L +  + A+   +IR AL+ + 
Sbjct: 178 AVDQALIRLGDEAELPAVIRAALQELG 204


>gi|16127467|ref|NP_422031.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15]
 gi|221236280|ref|YP_002518717.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus NA1000]
 gi|20455260|sp|Q9A3G7|RUVA_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766950|sp|B8H455|RUVA_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13424921|gb|AAK25199.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15]
 gi|220965453|gb|ACL96809.1| Holliday junction DNA helicase ruvA [Caulobacter crescentus NA1000]
          Length = 205

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 4/175 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E+  LIDV GV Y++ C  RTL  L  +G+   L +E+   +   +R
Sbjct: 1   MIGRLRGAVAEVGEEEALIDVMGVGYLVRCGHRTLQRLPALGEETLLHIESQWSESAGLR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  DR+ F+LLQ++QGVG + AM VL  ++  EL  ++  ++   + +  G+  K
Sbjct: 61  LYGFLTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           +A RI+TELK K I+   V+   MS          + P+   +A++AL+ LG  +
Sbjct: 121 LALRIVTELKDKPITDGPVL---MSAPTSSAPSAPAKPAPTGDAVAALMGLGVAE 172


>gi|73540190|ref|YP_294710.1| Holliday junction DNA helicase motor protein [Ralstonia eutropha
           JMP134]
 gi|90135661|sp|Q475R7|RUVA_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72117603|gb|AAZ59866.1| Holliday junction DNA helicase subunit RuvA [Ralstonia eutropha
           JMP134]
          Length = 193

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 109/209 (52%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGQPVTLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + G+GAR+A+ VLS ++ +EL ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVSELAQAITLQEAGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177
           A R+M ELKGK              +  E  H          A++ ++AL+ LGY + +A
Sbjct: 121 AERLMLELKGK--------------LGAELGHAPGAAPVHDSAVDILNALLALGYSEKEA 166

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            TA+  V      ++D    I+LAL+A+S
Sbjct: 167 ATAIKQV-PAGTGVSDG---IKLALKALS 191


>gi|167035195|ref|YP_001670426.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1]
 gi|189045762|sp|B0KTJ3|RUVA_PSEPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166861683|gb|ABZ00091.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1]
          Length = 205

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEAVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK   KA   S  +    + V+     + S  S   +A+SALV+LGY   +A+
Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEAS 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+ ++  K+K      ++IR +L+ +
Sbjct: 178 KAIAAI--KDKAGLSSEELIRRSLKGM 202


>gi|78485238|ref|YP_391163.1| Holliday junction DNA helicase RuvA [Thiomicrospira crunogena
           XCL-2]
 gi|123755243|sp|Q31H84|RUVA_THICR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78363524|gb|ABB41489.1| Holliday junction DNA helicase subunit RuvA [Thiomicrospira
           crunogena XCL-2]
          Length = 200

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +LI+V GV Y +  P+ T   +G++GD   L    H+R+D + L
Sbjct: 1   MIGFLSGTLHAKLPPQILINVNGVGYEVEAPMSTFYAIGEVGDEVMLLTHMHVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+L+R  F  L  V G+GA++A+G+LS ++  + V  + + ++  + +IPG+  K 
Sbjct: 61  FGFASELERSLFKELIKVNGIGAKMAIGILSAMSVNDFVGLVDVGDAPALTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQA-- 177
           A R++ E++ +     +    ++S     +  + S P +   +A+ AL++LGY   QA  
Sbjct: 121 AERLVIEMRDRLKGWGNGASSNVSS----KTMVSSAPHNQKASAVEALISLGYKTAQADK 176

Query: 178 -TTAVVSVLKKEKNIADDSQIIRL 200
              AV S L  E+ I    Q ++L
Sbjct: 177 MVQAVESGLSLEETIKKALQSVKL 200


>gi|126733600|ref|ZP_01749347.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp.
           CCS2]
 gi|126716466|gb|EBA13330.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp.
           CCS2]
          Length = 219

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 82/132 (62%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV YI+Y   R ++ L   G+   LF +  +R+D ++L
Sbjct: 1   MIGKIAGRLEYRSTDHVLIDVRGVGYIVYVSERVMAGLTSNGEAVALFTDLLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ +M +L  + A  +  +I L +   +A+  G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASMAILGTLGAEGVSRAIALGDWNAVAKAKGVGPKT 120

Query: 121 ASRIMTELKGKA 132
           A R+  ELK KA
Sbjct: 121 AQRVTIELKDKA 132


>gi|33598084|ref|NP_885727.1| Holliday junction DNA helicase motor protein [Bordetella
           parapertussis 12822]
 gi|44888435|sp|Q7W4T9|RUVA_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33566642|emb|CAE38852.1| holliday junction DNA helicase [Bordetella parapertussis]
          Length = 190

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 106/205 (51%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV GV Y I  P+ TL  L + G   TLF    +R+D   L
Sbjct: 1   MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++  EL ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK   L + +          Q+ I          ++AL+ LGY   ++  A
Sbjct: 121 AERLLLEMRGK---LGADIGATPHAAGGHQSDI----------LNALLALGYSDKESQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LKK     D S+ IRLAL+A+
Sbjct: 168 ----LKKLPEGVDVSEGIRLALKAL 188


>gi|310829219|ref|YP_003961576.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612]
 gi|308740953|gb|ADO38613.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612]
          Length = 203

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 105/193 (54%), Gaps = 4/193 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKGN E    DY+++D QG+ Y I     T+S L K+     +++    ++D + L
Sbjct: 1   MFEYIKGNYEEQASDYIVVDHQGMGYRINVSANTMSELPKLHKEVKVYIHPAFKEDDVTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  + ++ G+G + AMG+LS+ T  EL+  I+ +++K I++ PGI  K 
Sbjct: 61  YGFSSKEEREIFRTIITISGIGPKAAMGLLSQFTRDELIRYIVNEDAKAISRAPGIGQKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K  + +     +   +     ++    +    A++ L+ LGYG  +A+  
Sbjct: 121 ANRIILELKDKYKNFAFTDSAEPGAIE----NLRETDNLFNEAVNGLLGLGYGYAEASEL 176

Query: 181 VVSVLKKEKNIAD 193
           V  +++   +I D
Sbjct: 177 VEKIIQPGMSIED 189


>gi|71734074|ref|YP_275913.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|90135568|sp|Q48FC4|RUVA_PSE14 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71554627|gb|AAZ33838.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323052|gb|EFW79141.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329676|gb|EFW85665.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877979|gb|EGH12128.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330892240|gb|EGH24901.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330988969|gb|EGH87072.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 202

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|330991872|ref|ZP_08315821.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter sp. SXCC-1]
 gi|329760893|gb|EGG77388.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter sp. SXCC-1]
          Length = 207

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 10/211 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +  +  D  +IDV GV Y++    RTL+ L +  +   + VET +R+D I L
Sbjct: 1   MIAQLRGLLAQVEADRCVIDVGGVGYLVQASSRTLAVLPQPPELALVLVETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R WF LL +VQGVGA+VA+ +LS +   EL+ +I   +  ++ +  G+  ++
Sbjct: 61  YGFAEASERAWFRLLTTVQGVGAKVALAILSVLPPPELMMAIGSGDKTMLTRAGGVGARL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-----NKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+TEL+ K   + + +      V      +  AH     S A +A+ AL  LG+ + 
Sbjct: 121 AQRIVTELRDKCEGMPTGMVATGGGVPGVTITRPTAH-----SVAADAVLALSGLGFRRG 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +A   V  V+++ +   D   +IR AL+ ++
Sbjct: 176 EAQPVVERVIERHEGQVDLDIVIRDALKELA 206


>gi|298488209|ref|ZP_07006245.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157267|gb|EFH98351.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 202

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|46201286|ref|ZP_00055335.2| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 173

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 95/164 (57%)

Query: 40  KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           ++G   TLF+ET +R+D I LFGFL   +R WF LL +VQGVGA+V + +LS     +L+
Sbjct: 2   EVGSAATLFIETQVREDAISLFGFLDTGERDWFRLLTTVQGVGAKVGLAILSVAAPDQLL 61

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159
           + I  Q+   + +  G+  K+A RI+TELK KA  ++       +      A + +    
Sbjct: 62  QIIAAQDKAGLTRANGVGPKLAVRILTELKDKAGKIALGGFNPTAGAVASSAPLPAASGR 121

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
             +A+SALVNLGY + +A  AV    ++  + AD S +IR +L+
Sbjct: 122 MEDAVSALVNLGYKRLEAFQAVGETARELGDDADSSALIRASLK 165


>gi|254441542|ref|ZP_05055035.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           307]
 gi|198251620|gb|EDY75935.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           307]
          Length = 231

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 24/229 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +E    D+VLIDV+GV YI++   R ++ L ++G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRLEYRATDHVLIDVKGVGYIVFVSDRVMATLPRVGEAVALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  SI + +   +A   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWATVATAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS-----------------------CVNKEQAHICSMP 157
           A +++ +LK KA S+ ++                              V++         
Sbjct: 121 AKKVILDLKDKAHSVMAMAGTAAGAASAAGGVASVSADAETDADADALVDRYDGPAAGNG 180

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    A+SAL NLGYG   A  AV      E + AD + +IR AL+ ++
Sbjct: 181 AAQSEALSALSNLGYGPSDAAGAVAQA-AVENDGADTAVLIRAALKLLA 228


>gi|170723160|ref|YP_001750848.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619]
 gi|229560119|sp|B1JD71|RUVA_PSEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169761163|gb|ACA74479.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619]
          Length = 205

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S + A ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFHEKRERELFRELIRLNGVGPKLALALMSGLEADELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK   KA   S  +    + V+     +    +   +A+SALV+LGY   +A+
Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPVPVSGASTAEADAVSALVSLGYKPQEAS 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV ++  K+K      ++IR +L+ +
Sbjct: 178 KAVSAI--KDKAGLSSEELIRRSLKGM 202


>gi|70732089|ref|YP_261845.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5]
 gi|90135592|sp|Q4K7D8|RUVA_PSEF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68346388|gb|AAY93994.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5]
          Length = 202

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYEVEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R +F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFASKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQAQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +V        N+  A    + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEAVPSMFALVPNQPDAP-APVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  K+K ++ +  +IR AL+ +
Sbjct: 180 VSAI--KDKGLSSED-MIRRALKGM 201


>gi|315498698|ref|YP_004087502.1| holliday junction DNA helicase ruva [Asticcacaulis excentricus CB
           48]
 gi|315416710|gb|ADU13351.1| Holliday junction DNA helicase RuvA [Asticcacaulis excentricus CB
           48]
          Length = 205

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 117/217 (53%), Gaps = 24/217 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +  + +D  +I+V G+ YI+ C +RTL+ L   G    L +E+  R+D  RL
Sbjct: 1   MIGRLRGILLEIEDDEAVIEVMGLGYIVKCGVRTLANLPANGQEAILHIESQTREDGTRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R+ F  L +VQGVG + A+ VL  +T  EL  ++  ++   + +  G+  K+
Sbjct: 61  YGFLSKDERKTFQQLLTVQGVGPKAALSVLDILTPHELAIAVAHEDKTKVNKANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-----------NAISALVN 169
           A RI+ ELKGKA+++              +A +   P   +            +++AL+ 
Sbjct: 121 AQRIVIELKGKALAIG-------------EAFVPVAPGVVLASASSAASRSGESVAALMG 167

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           LG  + Q+  AV + +K+    A+ + +IR +L+ I 
Sbjct: 168 LGIPEAQSRQAVEAAVKELGPEAELAAVIRASLKLIG 204


>gi|330502219|ref|YP_004379088.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01]
 gi|328916505|gb|AEB57336.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01]
          Length = 202

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 113/205 (55%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +      ++L+DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 2   VIGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGEPVTLHAHLVVREDAHLL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 62  YGFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALVKVPGVGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S+       V  + A   S  S   +A+SAL++LGY   +A+ A
Sbjct: 122 AERLLVELKDRFKAWESIPSIAPLVVEPQLAQAVS--SAENDAVSALISLGYKPQEASRA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V  KE  ++ +  +IR ALR +
Sbjct: 180 VAAV--KEDGMSSED-LIRRALRGM 201


>gi|56697949|ref|YP_168319.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3]
 gi|81349137|sp|Q5LNT7|RUVA_SILPO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56679686|gb|AAV96352.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3]
          Length = 224

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 16/189 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+YC  RTL+ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRSTDHVLIDVRGVGYIVYCSDRTLAALPGVGEVVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S  +++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  FGFMSLAEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWASVKSAKGVGPKT 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCV-------------NKEQAHICSMPSFAINAI 164
           A RI+ +LK KA   +++   V Q M                 ++ A      +    A+
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVAQAMEGAVEVVEVIEPAAPAPRKAAPPGGAGAATAGAL 180

Query: 165 SALVNLGYG 173
           SAL NLGYG
Sbjct: 181 SALSNLGYG 189


>gi|254474829|ref|ZP_05088215.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp.
           R11]
 gi|214029072|gb|EEB69907.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp.
           R11]
          Length = 229

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 84/132 (63%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV YI+YC  RT++ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSERTMAALPGVGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKA 132
           A RI+ +LK KA
Sbjct: 121 AQRIVLDLKDKA 132


>gi|330959265|gb|EGH59525.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 202

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGFLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+     +  + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFALVSSGPNQLEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|332188826|ref|ZP_08390535.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17]
 gi|332011136|gb|EGI53232.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17]
          Length = 199

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 80/131 (61%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG ++    D+ +IDV GV Y++    RTLS +G +G+   L  E  + +D IRL
Sbjct: 1   MIAHLKGRLDSTGIDHAVIDVGGVGYLVGASARTLSVIGSVGEAAMLHTEMLVSEDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R WF LL  VQGVG+RVA+ +LS +   +L+ +I   +  ++A+  G+  K+
Sbjct: 61  VGFASADERDWFRLLTGVQGVGSRVALAILSALEPADLMRAIASGDKAMVARANGVGPKL 120

Query: 121 ASRIMTELKGK 131
           A RI+ ELK K
Sbjct: 121 AQRIVMELKDK 131


>gi|94496110|ref|ZP_01302688.1| probable holliday junction DNA helicase protein [Sphingomonas sp.
           SKA58]
 gi|94424289|gb|EAT09312.1| probable holliday junction DNA helicase protein [Sphingomonas sp.
           SKA58]
          Length = 202

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 112/205 (54%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K++G ++    D+ +IDV GV Y++    RTL+ LG +G+  T+  E  + +D IRL
Sbjct: 1   MIAKLRGLLDSTGIDHAVIDVGGVGYLVGASSRTLAALGPVGEAVTIHTEMLVAEDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R W+ LL  VQGVG+RVA+ +LS +   EL  ++   +  ++ +  G+  K+
Sbjct: 61  VGFARADERDWYRLLTHVQGVGSRVALAILSALEPAELHRAVATGDKAMVTRANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178
           A RI+ ELK K   + +        V        +MP  + + +A+SAL NLG+   +A+
Sbjct: 121 AQRIVNELKDK---IGAAPAGGPIGVGGA----VAMPVGNMSTDALSALQNLGFKPAEAS 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            AV +   +    A    ++RLALR
Sbjct: 174 AAVAAAEGELGEGASLDALVRLALR 198


>gi|66044657|ref|YP_234498.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           syringae B728a]
 gi|75502953|sp|Q4ZWL2|RUVA_PSEU2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|63255364|gb|AAY36460.1| DNA recombination protein, RuvA [Pseudomonas syringae pv. syringae
           B728a]
 gi|330968891|gb|EGH68957.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 202

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  + +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEA-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|103485830|ref|YP_615391.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis
           RB2256]
 gi|123380148|sp|Q1GWB4|RUVA_SPHAL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|98975907|gb|ABF52058.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis
           RB2256]
          Length = 199

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++     + +IDV GV Y++    RTL  LG +G   T+  E  + +D +RL
Sbjct: 1   MIAKLTGRLDSNGAGHAVIDVGGVGYLVEASARTLDALGAVGGEVTIHTEMLVGEDFLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL SVQGVGA+VA+ +LS +   +L  ++   +S +IA+  G+  K+
Sbjct: 61  LGFARAEERDWFRLLTSVQGVGAKVALAILSALEVADLQRALASGDSAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A RI  ELK KA +L          ++     + +      +AI+AL  LG+
Sbjct: 121 AQRITHELKDKAGALGG--------ISGSGPALSAAAGPVGDAIAALTGLGF 164


>gi|18310930|ref|NP_562864.1| Holliday junction DNA helicase motor protein [Clostridium
           perfringens str. 13]
 gi|168208649|ref|ZP_02634274.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214131|ref|ZP_02639756.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE
           str. F4969]
 gi|168215574|ref|ZP_02641199.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC
           8239]
 gi|169343575|ref|ZP_02864574.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str.
           JGS1495]
 gi|20455244|sp|Q8XJ13|RUVA_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|18145612|dbj|BAB81654.1| holliday junction DNA helicase [Clostridium perfringens str. 13]
 gi|169298135|gb|EDS80225.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str.
           JGS1495]
 gi|170713198|gb|EDT25380.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714360|gb|EDT26542.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE
           str. F4969]
 gi|182381996|gb|EDT79475.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC
           8239]
          Length = 201

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 106/185 (57%), Gaps = 8/185 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           I+G  +G+ +DYV+I++  + Y I+    T+S + K+GD   L++E  +R+D I L+GF 
Sbjct: 5   IRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGLYGFT 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K A RI
Sbjct: 65  TREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRI 124

Query: 125 MTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAV 181
           + ELK   K   L+S   Q +  +N    +     SF IN  +SAL+ LGY + +A  A+
Sbjct: 125 ILELKDKLKPDELTSEEGQLIEGINDNSDY-----SFNINETLSALMALGYTEKEAQKAL 179

Query: 182 VSVLK 186
             V K
Sbjct: 180 EKVDK 184


>gi|163742241|ref|ZP_02149629.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384571|gb|EDQ08952.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 229

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 83/132 (62%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV YI+YC  RT++ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKA 132
           A RI+ +LK KA
Sbjct: 121 AQRIVLDLKDKA 132


>gi|163738342|ref|ZP_02145757.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388263|gb|EDQ12617.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis BS107]
          Length = 229

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 83/132 (62%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV YI+YC  RT++ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKA 132
           A RI+ +LK KA
Sbjct: 121 AQRIVLDLKDKA 132


>gi|39996178|ref|NP_952129.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA]
 gi|81702836|sp|Q74E87|RUVA_GEOSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|39982943|gb|AAR34402.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA]
 gi|298505192|gb|ADI83915.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens
           KN400]
          Length = 199

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D ++IDV GV Y +  P  T   L + G   +L + TH+++D I L
Sbjct: 1   MIALLTGRLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPEEGKTVSLSIHTHVKEDSISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++++F LL SV G+G ++A  +LS I   EL  +I+  N   ++ IPGI  K 
Sbjct: 61  FGFRTLAEKEFFQLLISVSGIGPKMARDILSNIQPEELAAAIVQGNLVRLSSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K      V + D++   +E     +    A +  SALVNLGY +     A
Sbjct: 121 AERLVLELKEK------VRKMDVAPSAQEAPSSEAPAEVADDVASALVNLGYKE-----A 169

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAI 205
           VV  +  E +I  D+    ++R AL+ +
Sbjct: 170 VVRKVLAEMSIEPDASTEAVLRQALKVL 197


>gi|254464647|ref|ZP_05078058.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I]
 gi|206685555|gb|EDZ46037.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I]
          Length = 229

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +D+VLIDV+GV YI+YC  RT++ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRAQDHVLIDVRGVGYIVYCSDRTMAALPGTGEPVALYTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWATVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL---------- 167
           A RI+ +LK KA   +++   V   M     E          A  A  AL          
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVVDAMDGPGLELVEAADPAPAAKPARKALPKKPSGAAAA 180

Query: 168 --------VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                    NLGYG   A  AV        + AD+ ++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATWPD-ADEPELIRAALRLLA 226


>gi|168204868|ref|ZP_02630873.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str.
           JGS1987]
 gi|170663669|gb|EDT16352.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str.
           JGS1987]
          Length = 201

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 8/185 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           I+G  +G+ +DYV+I++  + Y I+    T+S + K+GD   L++E  +R+D I L+GF 
Sbjct: 5   IRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGLYGFT 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  + + F LL S+ GVGA+ A+ +LS  T   L   I++ + K I + PGI  K A RI
Sbjct: 65  TREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYGIMMGDEKHITRAPGIGKKTAQRI 124

Query: 125 MTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAV 181
           + ELK   K   L+S   Q +  +N    +     SF IN  +SAL+ LGY + +A  A+
Sbjct: 125 ILELKDKLKPDELTSEEGQLIEGINDNSDY-----SFNINETLSALMALGYTEKEAQKAL 179

Query: 182 VSVLK 186
             V K
Sbjct: 180 EKVDK 184


>gi|58040113|ref|YP_192077.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H]
 gi|81351699|sp|Q5FQC5|RUVA_GLUOX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58002527|gb|AAW61421.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H]
          Length = 200

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +  +  +  ++DV GV Y++    RTL+ L +      + +ET +R+D I+L
Sbjct: 1   MIGQLTGLVGQIEGERCIVDVNGVGYVVSASTRTLAVLPQPPSVARVLIETIVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R WF LL +VQ VGA+VA+ +LS     EL+ +I   +   + +  G+  ++
Sbjct: 61  FGFATTDERDWFRLLTTVQSVGAKVALAILSANNPGELLLAINAGDKGSLTRAAGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++EL+ K      V +            I S PS   +A+ AL  LG+ + +A   
Sbjct: 121 ADRILSELRNK------VAKMPGGGGTVSAPGIVSGPSVENDALLALAGLGFRRAEAWPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  VL + +N   D   IRL+L+ ++
Sbjct: 175 LSKVLAENENATLD-LAIRLSLKDLA 199


>gi|254511523|ref|ZP_05123590.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium
           KLH11]
 gi|221535234|gb|EEE38222.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium
           KLH11]
          Length = 225

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 87/132 (65%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV Y++YC  RT++ L  +G+  +++ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRAADHVLIDVRGVGYLVYCSDRTMAALPGVGEAVSIYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS ++++W  LL SVQGVGA+V++ +LS +    +  +I L +   +    G+  K 
Sbjct: 61  YGFLSLVEKEWHRLLCSVQGVGAKVSLAILSALGPDGVSRAIALGDWGAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKA 132
           A RI+ +LK KA
Sbjct: 121 AQRIVLDLKDKA 132


>gi|255658187|ref|ZP_05403596.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM
           20544]
 gi|260849495|gb|EEX69502.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM
           20544]
          Length = 199

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  LY DY L+DV GV Y ++    T + L ++ +  +LF  T +R+D I L
Sbjct: 1   MIGYLHGRVIALYTDYCLLDVHGVGYRVFLANSTRAKL-RLKEEASLFTYTSVREDAIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+ L  V G+G +VA+G+LS IT   L  +I  + + V+ ++PGI  K 
Sbjct: 60  YGFATEEEYELFLQLIGVSGIGPKVALGILSAITVESLCRAIQNKQASVLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     S  ++ ++  N+ +    ++      A++AL +LGY Q +    
Sbjct: 120 AERLILELKDKVAFADSGEEELLTIENEAEVGDDAVA----EAMAALQSLGYTQAE---- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V++K         II+ +L+A+S
Sbjct: 172 IAPVIRKTAKYKTTEAIIKESLKALS 197


>gi|294085860|ref|YP_003552620.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665435|gb|ADE40536.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 207

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 118/211 (55%), Gaps = 12/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +    + + +IDVQGV Y++    RT   L       T+  E  +R+D + L
Sbjct: 1   MIAQLRGILSHTADTHAIIDVQGVGYLVNISSRTQGQLAAQDGAVTVLTEMIVREDSMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F LL +VQGVGA+ AM +LS ++  +L  +I+  +  ++A+  G+  KI
Sbjct: 61  YGFHDASERDAFRLLITVQGVGAKAAMAILSVLSPADLSSAIMAGDKAMVARADGVGPKI 120

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQD 175
           A R++ EL    G+  SL   +  ++S V   +     +P  +   +A+SAL+NLGYG+ 
Sbjct: 121 AQRVVNELAEKIGRFPSLGDGLTINISGVTGGE----DLPGASAMGDALSALINLGYGRS 176

Query: 176 QATTAVVSVLKKEKNIADD-SQIIRLALRAI 205
           +A  A++ V  ++   ADD S +I  ALR I
Sbjct: 177 EAHAALLRV--QQAGDADDLSGLIAAALREI 205


>gi|296117349|ref|ZP_06835939.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976115|gb|EFG82903.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 204

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +  +  D  +IDV GV Y++    RTLS L +  +   + +ET +R+D I L
Sbjct: 1   MIAQLTGLVGQVEADRCVIDVGGVGYLVLASTRTLSALPQGPEVARVLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R WF LL +VQGVGA+VA+ +LS + A+EL+ +I   +   + +  G+  ++
Sbjct: 61  YGFIDAAERSWFRLLTTVQGVGAKVALAILSTLPASELIAAIASGDKSGLTRAAGVGARL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ K   +          V      +        +A+ AL  LG+ + +A   
Sbjct: 121 AQRIVTELRDKCDGMPG---GGAPGVVMAGVKVTGNGGVMSDALLALSGLGFRRAEAQPV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+ +     D   IIR +L+ ++
Sbjct: 178 VARVMDRLDGGGDLDVIIRESLKELA 203


>gi|117923791|ref|YP_864408.1| Holliday junction DNA helicase RuvA [Magnetococcus sp. MC-1]
 gi|166230563|sp|A0L4V9|RUVA_MAGSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117607547|gb|ABK43002.1| Holliday junction DNA helicase subunit RuvA [Magnetococcus sp.
           MC-1]
          Length = 204

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG++   + D+V++DV GV Y ++  + T + L  +G+ C L+  TH+R+D   L
Sbjct: 1   MIAQLKGSLAAKHPDHVVMDVHGVGYRVFISLATYNELPTVGEACLLYTVTHVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+  R+ F LL SV G+G ++A+  LS  T   L+ ++  ++  ++  IPG+  K 
Sbjct: 61  YGFHSESQRKVFNLLTSVNGIGTKLALAALSSHTPEALLTALSREDLTLLCTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K  +L               A+   +        SAL+NLGY   Q   A
Sbjct: 121 AQRMAMELKDKLGALPMAAPTTAIGAATMAANPAGLRE---EVASALLNLGYKPPQVDAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +    + I D S  ++ AL+ ++
Sbjct: 178 LAKLFSAGE-ITDISVALKGALKLLA 202


>gi|146283144|ref|YP_001173297.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501]
 gi|166230587|sp|A4VNA4|RUVA_PSEU5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145571349|gb|ABP80455.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501]
 gi|327481497|gb|AEA84807.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri DSM 4166]
          Length = 201

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 119/205 (58%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHMILDVNGIGYEVEVPMTTLYRLPAVGEPVTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++ V+ +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSVLVRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S+    ++ +  E     ++ S   +A+SAL++LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWESM--PAIATLVVEPGSKTAVTSAENDAVSALISLGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  +E+N++ + ++IR AL+ +
Sbjct: 179 VSAI--QEENLSSE-EMIRRALKGM 200


>gi|34499678|ref|NP_903893.1| Holliday junction DNA helicase RuvA [Chromobacterium violaceum ATCC
           12472]
 gi|44888390|sp|Q7NQB7|RUVA_CHRVO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34105529|gb|AAQ61883.1| holliday junction DNA helicase [Chromobacterium violaceum ATCC
           12472]
          Length = 197

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 19/209 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       V++DV GV Y +  P+ T   L  +G  CTLF    +R+D   L
Sbjct: 1   MIGRLSGKLIEKLPPQVVVDVNGVGYEVDVPMTTFYQLPALGQPCTLFTHLAVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +RQ F  L  V G+GA++A+ +LS +TA EL  ++  ++ K ++ +PGI  K 
Sbjct: 61  YGFASKEERQTFRQLIKVTGIGAKIALAILSGMTADELAIAVASEDIKRLSAVPGIGKKT 120

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ EL+GK A   +  V   +           + P    + ++AL+ LGY + +A  
Sbjct: 121 AERLVLELRGKLATGGNLTVPGGLP--------FAATPDEKSDIVNALLALGYNEKEAAA 172

Query: 180 AVVSVLKKEKNIADD---SQIIRLALRAI 205
           A        K++  D   S+ +RLAL+++
Sbjct: 173 AT-------KSLPADVTVSEGVRLALKSL 194


>gi|330811393|ref|YP_004355855.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379501|gb|AEA70851.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 202

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R +F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFVGKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQSQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +V        N+  A   ++ S   +A++AL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEAVPAMFALVPNQPDAPAPAV-SAESDAVTALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  KEK ++ +  +IR AL+ +
Sbjct: 180 ISAI--KEKGLSTED-MIRRALKGM 201


>gi|329848091|ref|ZP_08263119.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum
           C19]
 gi|328843154|gb|EGF92723.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum
           C19]
          Length = 201

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 111/203 (54%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +  + ++  +++  GV YI+ C IRTL+ + K      L +++  R+D  RL
Sbjct: 1   MIGRLRGPLLEVGDEDAVVEAGGVGYIVRCGIRTLAAMPKPDTEVILHIDSQTREDGTRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +RQ F  L  VQGVG + A+ VL  ++  +L +++   +   + +  G+  K+
Sbjct: 61  YGFLNKDERQAFQALLGVQGVGPKAALAVLDVLSPGQLAQAVAQDDKASVGRANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGKA++ ++     +      +A +         +++AL+ LG  + QA  A
Sbjct: 121 ALRIVVELKGKALTSATFEPIALKPAEPVKASVNG------ESVAALIGLGISETQARLA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V + ++     A    +IR AL+
Sbjct: 175 VEAAIQTLGADAALPAVIRTALK 197


>gi|190571380|ref|YP_001975738.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018779|ref|ZP_03334587.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|254767401|sp|B3CMH6|RUVA_WOLPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190357652|emb|CAQ55096.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995730|gb|EEB56370.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 190

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 118/207 (57%), Gaps = 19/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MIG ++G ++ +  D+++++V  V YI+Y   +TLS    IG    L ++T+   R++  
Sbjct: 1   MIGNLRGIVDEVCSDHIILNVNDVGYIVYLSAKTLSACS-IGSRVKLLIDTYANSRENVT 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF+S  ++Q   LL  V GV  + AM +LS++T  +L  +II ++ K+  ++ G+ +
Sbjct: 60  QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIINED-KLALKVSGLGL 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L          +N    H     S + +A+SAL+NLGY + +A 
Sbjct: 119 KLINRIITELNGKVSKLE---------INNNHFH-----SISEDALSALINLGYERTKAY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             +  +  +  N+ D   IIR+AL+ I
Sbjct: 165 DTIKKIEDESPNL-DTKDIIRMALKTI 190


>gi|288939916|ref|YP_003442156.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM
           180]
 gi|288895288|gb|ADC61124.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM
           180]
          Length = 211

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I   +   +L+DV GV Y +  P+ T   L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLQGRILAKHPPQLLLDVNGVGYELEAPMSTFYGLPAVGETATLLTHLAVREDAWTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ + DR  F  L  V GVGAR+A+ +LS + A    + +  +++  + ++PGI  K 
Sbjct: 61  YGFIRERDRALFRALIKVTGVGARMALAILSGMDAARFAQCVEQEDATALTRLPGIGKKT 120

Query: 121 ASRIMTELKGK--------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A R++ E++ +          +L S   Q  S      A + +      +A+SALV LGY
Sbjct: 121 AERLIIEMRDRLGGVMIAPGAALPSAAGQPASGTTT--ADVVAEDQALADAVSALVALGY 178

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
               A     +V    K      +IIR ALR+++
Sbjct: 179 KPPDANRMARAVDDGAKTA---EEIIRAALRSVN 209


>gi|302671008|ref|YP_003830968.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus
           B316]
 gi|302395481|gb|ADL34386.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus
           B316]
          Length = 207

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E L +   +IDV G+ Y +     T+  +  IG+   L+  T++++D   L
Sbjct: 1   MIAYVNGILENLEDGNAVIDVNGIGYNVNISGSTMDRMPGIGEMVKLYTYTNVKEDAFTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  +   F LL +V G+G +  + +LS +T  +L  +I+  +SK +++ PGI  K 
Sbjct: 61  FGFLSRDELNLFKLLITVNGIGPKGGLAILSVMTPDDLRFAILAGDSKSLSKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQA 177
           A RI  EL+ K + LS    + +   +   A I SM    S    A++ALV LGY    A
Sbjct: 121 AERITLELRDK-LKLSE--DELLGGTSASAADIGSMDGDNSARDEAVAALVALGYNSSDA 177

Query: 178 TTAVVSVLKKEKNIADDSQI-IRLALR 203
             AV  VL   K   +D++I ++LAL+
Sbjct: 178 MKAVRKVLASSKEAGEDTEILLKLALK 204


>gi|319778457|ref|YP_004129370.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9]
 gi|317108481|gb|ADU91227.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9]
          Length = 191

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 110/205 (53%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG +   +   V ID+ G+ Y +   + +   L ++G   TLF    +R+D   L
Sbjct: 1   MISRLKGKLIYKFPPTVCIDIGGIAYDVDVSLTSFYELPEVGQEVTLFTHLAVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ +R  F  L  V G+G + A+G+LS ++   L  +I  Q+S  + ++PGI  K 
Sbjct: 61  YGFISEDERATFRTLIKVNGIGFKSALGILSGMSPDALYNAIEEQDSSQLERVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELKGK   +S++     +  N     I            AL+NLGY + QA  A
Sbjct: 121 AARIILELKGKLPEISTLNNTTSNLKNHNDVLI------------ALLNLGYSEKQAKLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +S L K+    D S+ +R+ALR++
Sbjct: 169 -ISTLPKD---IDASEGVRIALRSM 189


>gi|301155728|emb|CBW15196.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 203

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 15/210 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +       +L+DVQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDQFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSFAINAISALVNLGYGQ 174
           A R++ ELKGK      V Q D    +K   HI S        S A  AI+AL+ LGY  
Sbjct: 121 AERLLVELKGK---FKDVRQSDFFVESK---HIPSTSELRQAESSADEAIAALIALGYKP 174

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             A   V  V K + +     Q+IR AL+A
Sbjct: 175 TDAEKMVKKVAKADLS---SEQLIREALKA 201


>gi|89094837|ref|ZP_01167770.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92]
 gi|89080892|gb|EAR60131.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92]
          Length = 210

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +       ++IDVQGV Y +   + T   L ++G   TLF    +R+D   L
Sbjct: 1   MIGRLKGELIEKQPPQLVIDVQGVGYEVEASMNTFYRLPELGSTLTLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS I+ +E V  +   ++  + ++PG+  K 
Sbjct: 61  YGFYDKEERSLFRTLIKANGVGPKLAITILSGISTSEFVRCVNDGDTASLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---AISALVNLGYGQDQA 177
           A R++ E+K K  +L      D      +   + S    A N   A SALV LGY   QA
Sbjct: 121 AERLIVEMKDKIKALGLETSGDFELSAADGPDMASFEPQADNRAEAESALVALGYKPVQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           T A+  V K   + A   ++IR ALR++
Sbjct: 181 TKAIEQVFKTLGSSASSEELIRHALRSM 208


>gi|182624414|ref|ZP_02952198.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str.
           JGS1721]
 gi|177910417|gb|EDT72794.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str.
           JGS1721]
          Length = 201

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 106/185 (57%), Gaps = 8/185 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           I+G  +G+ +DYV+I++  + Y I+    T+S + K+G+   L++E  +R+D I L+GF 
Sbjct: 5   IRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGLYGFT 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K A RI
Sbjct: 65  TREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRI 124

Query: 125 MTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAV 181
           + ELK   K   L+S   Q +  +N    +     SF IN  +SAL+ LGY + +A  A+
Sbjct: 125 ILELKDKLKPDELTSEEGQLIEGINDNSDY-----SFNINETLSALMALGYTEKEAQKAL 179

Query: 182 VSVLK 186
             V K
Sbjct: 180 EKVDK 184


>gi|166031914|ref|ZP_02234743.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC
           27755]
 gi|166028367|gb|EDR47124.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC
           27755]
          Length = 203

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +   YED V++DV GV Y IY   +++S L  IG    +    ++++D ++L
Sbjct: 1   MISYIRGELAAQYEDKVIVDVGGVGYGIYMSAQSMSKLPPIGSEVKIHTYLNVKEDSMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL  V G+G +    +LS ++  +L  +++  + K I+  PGI  K 
Sbjct: 61  FGFLTVDDLNVFKLLIGVSGIGPKGGQAILSVLSPDDLRFAVMADDVKAISSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K +S+   ++  ++     +A + +       A+ ALV LGYG  +A  A
Sbjct: 121 AQKLIVELKDK-LSIEDALEHAITEDGALKAQMSTGGEIQSEAVQALVALGYGNTEALKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V     K+  I  D Q+  L  RA+
Sbjct: 180 V-----KQVEITPDMQVEELLKRAL 199


>gi|225374901|ref|ZP_03752122.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM
           16841]
 gi|225213284|gb|EEG95638.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM
           16841]
          Length = 203

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 13/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E   EDY++++  G+ Y I+   +T   L  +G+   ++   H+R+D + L
Sbjct: 1   MYAYIKGTLEETGEDYIVVEAGGIGYQIFTTGQTFQYLPSMGEEVKVYTYLHVREDAMIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL  V G+G + A+ +LS +T  +L  +++  ++K IA+ PG+  K 
Sbjct: 61  FGFLTKDDLFVFRLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A R++ ELK K +SL    +Q ++   K    + +    A N AI ALV LGY   +A  
Sbjct: 121 AQRLILELKDK-LSLEDAFEQKLA---KNDNPVQNKAKGAKNEAIEALVALGYSSSEALK 176

Query: 180 AVVSVLKKEKNIADDS---QIIRLALRAIS 206
           A+  +      I DD+    I++ AL+ ++
Sbjct: 177 ALNGI-----EITDDTDVEDILKAALKNMA 201


>gi|330975328|gb|EGH75394.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 202

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LG    +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGNKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|15602842|ref|NP_245914.1| Holliday junction DNA helicase motor protein [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431841|sp|P57893|RUVA_PASMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|12721303|gb|AAK03061.1| RuvA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 204

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 18/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +   +   +L+DVQGV Y +  P+ +   L  IG    LF    +R+D   L
Sbjct: 1   MIGHLTGRLVEKHPPEILLDVQGVGYELLLPMTSFYQLPDIGQQTALFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVEEFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--------AISALVNLGY 172
           A R++ ELKGK      + Q+D      E  H+   P  A+N        AISAL+ LGY
Sbjct: 121 AERLLVELKGK---FKGIQQEDFFI---ESQHL-KQPEHALNEQDIPASEAISALIALGY 173

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
              +A  A   V K  K      Q+IR AL+A
Sbjct: 174 ---KAAEAEKLVKKISKPALSSEQLIREALKA 202


>gi|146306303|ref|YP_001186768.1| Holliday junction DNA helicase motor protein [Pseudomonas mendocina
           ymp]
 gi|145574504|gb|ABP84036.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas mendocina
           ymp]
          Length = 202

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 116/206 (56%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +      ++L+DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 2   VIGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGETLTLHTHQVVREDAHLL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 62  YGFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALTKVPGVGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL++LGY   +A+ A
Sbjct: 122 AERLLVELKDRFKAWETM--PAIATLVVEPRLGATVSSAENDAVSALISLGYKPQEASRA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V  KE  ++ +  +IR ALR ++
Sbjct: 180 VAAV--KEDGLSSED-LIRRALRGMA 202


>gi|154504992|ref|ZP_02041730.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149]
 gi|153794875|gb|EDN77295.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149]
          Length = 375

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 106/189 (56%), Gaps = 18/189 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  I+G + GL  D  ++DVQGV Y IY P ++LS LG IG  C + + T++  R+D +
Sbjct: 176 MISYIRGELAGLERDKAIVDVQGVGYGIYMPEQSLSLLGPIG--CEVKIHTYLNVREDAM 233

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +LFGFL+  D + F L+  V G+G +  + +LS ++A EL  +++  ++K I   PGI  
Sbjct: 234 QLFGFLTRDDLEVFRLVIGVSGIGPKGGLNILSCLSADELKFAVLSGDAKAICAAPGIGK 293

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVNLGY 172
           K A +++ ELK K + L  +++          A    +PS   N      A+ ALV LGY
Sbjct: 294 KTAEKLIIELKDK-LDLKEMLE-------PRSAAAAEIPSDGRNGDIQTEAVQALVALGY 345

Query: 173 GQDQATTAV 181
           G  ++  AV
Sbjct: 346 GNAESLKAV 354


>gi|313904087|ref|ZP_07837467.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6]
 gi|313471236|gb|EFR66558.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6]
          Length = 203

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 111/203 (54%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG IE + ED V++D  G+ + ++ P  +L+   + G+   L+    ++QD + L
Sbjct: 1   MIGFIKGVIEEITEDSVVVDNNGIGWQVFVPGSSLAGNIRQGEEIKLYTYLSVKQDSLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  DR+ F+ L  V G+G + A+G+LS ++A +L  +++  ++  IA+ PGI  K 
Sbjct: 61  FGFLNRDDREVFIRLLDVSGIGPKGALGILSVMSADDLRFAVLSDDAAAIAKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A + + ELK K   L    ++ ++   ++     +      +A+ ALV LGY   +A  A
Sbjct: 121 AQKAVLELKDK-FKLDDAFEKKLAHEQEKAGAAAAQAGAETDAVQALVALGYSGTEAMQA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V   E    D   I++ AL+
Sbjct: 180 VRKVGAGED--MDSEAILKAALK 200


>gi|163855209|ref|YP_001629507.1| Holliday junction DNA helicase RuvA [Bordetella petrii DSM 12804]
 gi|229560006|sp|A9I8F2|RUVA_BORPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163258937|emb|CAP41236.1| holliday junction DNA helicase [Bordetella petrii]
          Length = 190

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       + +DV G+ Y I  P+ TL  L ++G   TL     +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTICVDVNGLGYDIEVPMSTLYALPELGARVTLHTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++ ++L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFATAAERGAFRELIKVSGIGARTALSVLSGLSVSDLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK       +  D+       AH  ++P    + ++AL+ LGY   ++  A
Sbjct: 121 AERLLLEMRGK-------LGADIGAT----AH--AVPDSQTDILNALLALGYSDKESQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LKK       S+ IRLAL+A+
Sbjct: 168 ----LKKLPEGTGVSEGIRLALKAL 188


>gi|89895213|ref|YP_518700.1| hypothetical protein DSY2467 [Desulfitobacterium hafniense Y51]
 gi|122997255|sp|Q24UN6|RUVA_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89334661|dbj|BAE84256.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 201

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 117/213 (54%), Gaps = 20/213 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQI 58
           MIG ++G +  +  D +++DVQGV Y +  P      LGK      L + TH  +R+D++
Sbjct: 1   MIGMLRGKVWEIQADKLILDVQGVGYQLSIPY---GLLGKAHPGHELILYTHVILREDEL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S  +++ F+L+ SV G+G + A+ +LS +   +   +I  +N  ++ ++PGI  
Sbjct: 58  ALYGFSSAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGK 117

Query: 119 KIASRIMTEL----KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           K A R++ EL    KG+AI+L  +          E A      +F   A+  L+ LG+ Q
Sbjct: 118 KTAQRLILELKEKFKGRAIALEGI----------EGAGSLPQAAFHSEAMETLLALGFSQ 167

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           ++A  A+ ++    + ++ + Q +RLALR+++ 
Sbjct: 168 EEAKKALQALPDSAQALSTEEQ-VRLALRSLAA 199


>gi|255526659|ref|ZP_05393564.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|296187164|ref|ZP_06855561.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|255509639|gb|EET85974.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|296048199|gb|EFG87636.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
          Length = 197

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 109/199 (54%), Gaps = 10/199 (5%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           I+G   G+ +DY++++  G+ Y IY    TL+ + KI +   L+++  +R+D I L+GFL
Sbjct: 5   IRGTYAGMNKDYIVVENNGIGYKIYTSGSTLAKIPKINEEIMLYLQQIVREDFIGLYGFL 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +   F LL S+ GVGA+ A+ +LS  +   L  +I+  + K+I + PGI  K++ RI
Sbjct: 65  TKEELSMFNLLLSINGVGAKAALSLLSISSVNNLKYAILSGDEKLITRAPGIGKKMSQRI 124

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + ELK K      V  +D+     +   I      +  A+ ALV LGY + +A  A+ ++
Sbjct: 125 ILELKDK------VKPEDVDISQGDTIEIDETAGNSSEALEALVALGYSEKEANKAINTI 178

Query: 185 LKKEKNIADDSQIIRLALR 203
            KK+        IIR AL+
Sbjct: 179 DKKD----SVENIIRNALK 193


>gi|237746839|ref|ZP_04577319.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes
           HOxBLS]
 gi|229378190|gb|EEO28281.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes
           HOxBLS]
          Length = 193

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D QGV Y I  P+ T   L  +G+  TLF    +R+D   L
Sbjct: 1   MIGRIHGTLLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGENVTLFTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + G+GAR+A+ +LS ++  E+ +++ LQ++  + +IPGI  K 
Sbjct: 61  YGFGSLDERTLFRQLVRITGIGARIALALLSGLSVAEMAQAVALQDATRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  S +S+     +  N     I           +AL+ LGY + +  TA
Sbjct: 121 AERLLLELKGKFDS-ASLTAAPSAVSNDSMTDIQ----------NALLALGYSEKETLTA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   + N++D    I++AL+ +S
Sbjct: 170 IKQI-PADCNVSDG---IKMALKTLS 191


>gi|74318231|ref|YP_315971.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC
           25259]
 gi|90146182|sp|Q3SGT1|RUVA_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|74057726|gb|AAZ98166.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC
           25259]
          Length = 191

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 21/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       VL+DV GVCY I  P+ T   L  IG+   L     +R+D   L
Sbjct: 1   MIGRITGTLAAKQPPQVLVDVNGVCYEIDVPMSTFYNLPGIGEKVALLTHLAIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+++R  F  L  V G+GA+ A+ VLS ++  +L  +I  Q    I ++PGI  K 
Sbjct: 61  YGFGSEVERAAFRELLKVSGIGAKTALSVLSGLSVNDLSAAIAAQEIGRIVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A R++ ELKGK +   +               + S+PS     +   AL+ LGY  ++ T
Sbjct: 121 AERLLLELKGKPVFAGA---------------LASVPSAGASDDVRQALLALGY-NERET 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A V  L     +    + IR ALRA+S
Sbjct: 165 AATVRELPAGLAV---GEAIRQALRALS 189


>gi|110800505|ref|YP_696628.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC
           13124]
 gi|123148615|sp|Q0TP12|RUVA_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110675152|gb|ABG84139.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC
           13124]
          Length = 201

 Score =  104 bits (259), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 8/185 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           I+G  +G+ +DYV+I++  + Y I+    T+S + K+G+   L++E  +R+D I L+GF 
Sbjct: 5   IRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGLYGFT 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K A RI
Sbjct: 65  TREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRI 124

Query: 125 MTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAV 181
           + ELK   K   L+S   + +  +N    +     SF IN  +SAL+ LGY + +A  A+
Sbjct: 125 ILELKDKLKPDELTSEEGELIEGINDNSDY-----SFNINETLSALMALGYTEKEAQKAL 179

Query: 182 VSVLK 186
             V K
Sbjct: 180 EKVDK 184


>gi|91203074|emb|CAJ72713.1| strongly similar to DNA helicase RuvA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 196

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 112/203 (55%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +       ++++V GV Y+++ PI T   +   G+  T+  +  +R+D I+L
Sbjct: 1   MLDYIRGQVISKSPTKLVLEVAGVGYLLHIPISTFEKIPSRGE-VTIHTQLFLREDGIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R  F LL SV GVG  +A+ +LS  TA ++  +I  +++K + +I G+  K 
Sbjct: 60  FGFASDEERGLFQLLLSVNGVGPTMAIAILSGSTANDIKCAIAREDTKALMRIKGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK       + +  +M    +         +FA +AI AL++LGYG+  A  A
Sbjct: 120 AERIVLELKESVKGAKASIDIEMDGRQR---------AFADDAIMALISLGYGRPVAENA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   +KK  ++ +   ++R AL+
Sbjct: 171 VKEAVKKLNSVDNIEVLVREALK 193


>gi|167759024|ref|ZP_02431151.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704]
 gi|167663431|gb|EDS07561.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704]
          Length = 203

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 2/184 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +E L ED V+IDV G+ Y ++   + +  L  IG    +    ++++D ++L
Sbjct: 1   MISYLKGTLEALEEDKVVIDVGGIGYGVFMSGQAMGLLPSIGKEVKIHTYLNIKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F LL  V G+G +  +GVLS ++  EL  +++  + K I Q PGI  K 
Sbjct: 61  YGFLTKDDLEVFKLLIGVNGIGPKGGLGVLSALSPDELRFAVMSNDVKAICQAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ EL+ K + L   ++  ++  N+ Q           NA+ AL  LGYG  +A  A
Sbjct: 121 AEKLILELRDK-LRLEDALEH-LASENEVQGAAAYQGEVQSNAVQALAALGYGSTEALKA 178

Query: 181 VVSV 184
           V  V
Sbjct: 179 VRQV 182


>gi|260912903|ref|ZP_05919388.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis
           ATCC 43325]
 gi|260632893|gb|EEX51059.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis
           ATCC 43325]
          Length = 204

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQGV Y +  P+ +   L +IG   +LF    +R+D   L
Sbjct: 1   MIGHLTGRLVEKQPPEILLDVQGVGYELLLPMTSFYNLPEIGQKTSLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E V +I  +    + +IPG+  K 
Sbjct: 61  FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSF-AIN--AISALVNLGYGQDQ 176
           A R++ ELKGK      V Q D    +K    +  SM S  A N  A+SALV LGY   +
Sbjct: 121 AERLLVELKGK---FKDVTQGDFFIESKHLPDVKVSMQSSDAPNDEAVSALVALGYKPVE 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A   V  + K +       Q+IR AL+A
Sbjct: 178 AEKMVKRITKPD---LSSEQLIREALKA 202


>gi|85858586|ref|YP_460788.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB]
 gi|123725225|sp|Q2LRA9|RUVA_SYNAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85721677|gb|ABC76620.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB]
          Length = 204

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +       V+ID  G+ Y +  P+ T   L  +G   +LFV T  +QD I L
Sbjct: 1   MIAQIRGKLILKTVSMVIIDNHGIGYEVMIPLSTYYELPDVGSEVSLFVYTFFKQDSILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF ++ ++Q F L+ SV G+G R+A+ VLS I ++EL+ +I   +   + ++PG+  K+
Sbjct: 61  VGFCTENEKQLFKLMISVSGIGPRLAVNVLSGINSSELIHAIANNDLNRLLKVPGLGRKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K    +S  ++ ++ +N ++  I        +AISAL+NLGY    A  A
Sbjct: 121 AQRVILELRDKVSGWTS--KEQITFINNKKDAI-DQSVMEEDAISALINLGYKSQAAKDA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V+ +         I++ AL+ ++
Sbjct: 178 IDRVISEGGENKSLDVILKKALKVLA 203


>gi|167644751|ref|YP_001682414.1| Holliday junction DNA helicase RuvA [Caulobacter sp. K31]
 gi|189045745|sp|B0SUN8|RUVA_CAUSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167347181|gb|ABZ69916.1| DNA recombination protein RuvA domain I [Caulobacter sp. K31]
          Length = 204

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 1/140 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E+  LIDV GV Y++ C  RTL  L  +G+   L +E+   +   +R
Sbjct: 1   MIGRLRGAVAEIGEEEALIDVMGVGYVVRCGSRTLQRLPALGEEALLHIESQWSESAGLR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  DR+ F+LLQ++QGVG + AM VL  ++  EL  ++  ++   + +  G+  K
Sbjct: 61  LYGFGTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRASGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVV 139
           +A RI+TELK K I+   V+
Sbjct: 121 LALRIVTELKDKPITDGPVL 140


>gi|95931133|ref|ZP_01313858.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM
           684]
 gi|95132823|gb|EAT14497.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM
           684]
          Length = 199

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 116/206 (56%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I     D V++DV GV Y +  P+ +   L +     TL + TH+R+D ++L
Sbjct: 1   MIARLCGTIVSKTIDQVIVDVNGVGYQVSVPLSSFYQLEE-NQTATLQIYTHVREDALQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  ++Q F+LL S+ G+G +VA+ +LS +    L + ++ +++K +A +PGI  K 
Sbjct: 60  FGFQSLDEKQMFILLLSISGIGPKVALNILSHMDCHALRDCLLQEDAKRLATLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L     Q      +   H     +   +A+SAL+NLGY + QA +A
Sbjct: 120 ADRLILELREKVRKLYPEQPQTTQAAPEGVLH----NNHHDDALSALINLGYKEKQA-SA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +S L +E   +   ++++ AL+ +S
Sbjct: 175 ALSRLTRE--FSSMEEMLKAALQQLS 198


>gi|58698305|ref|ZP_00373222.1| Holliday junction DNA helicase RuvA, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630965|ref|YP_002727756.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi]
 gi|254767402|sp|C0R4X3|RUVA_WOLWR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58535178|gb|EAL59260.1| Holliday junction DNA helicase RuvA, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592946|gb|ACN95965.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi]
          Length = 190

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 115/209 (55%), Gaps = 22/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MIG + G ++ +  D+++++V  V Y++Y   +TLS    IG    L +ET+   R++  
Sbjct: 1   MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLSACA-IGSRIKLLIETYANNRENTT 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF+S+ ++Q   LL  V GV  + AM +LS++T  +L  + I+   KV  ++ G+ +
Sbjct: 60  QLYGFISEEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLA-IMNEDKVTLKMSGLGL 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L          +N    H  +      +A+SAL+NLGY + +A 
Sbjct: 119 KLINRIITELSGKVSKLE---------INNNNFHPINE-----DALSALINLGYEKMKAY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207
             +    KK +   D   IIR+AL+ +S 
Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELST 189


>gi|326795234|ref|YP_004313054.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas
           mediterranea MMB-1]
 gi|326545998|gb|ADZ91218.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas
           mediterranea MMB-1]
          Length = 199

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       +L+DV G+ Y +Y  + T+  L  IG+   L     +++D   L
Sbjct: 1   MISRIVGTLIEKMPPELLVDVNGIGYEVYASMTTIYDLASIGETVVLHTHLQVKEDSHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F +L  V G+G ++A+ +LS ++ +EL+E++   N   + +IPG+  K 
Sbjct: 61  YGFHSKDERAVFRVLIKVNGIGPKMALAILSSMSTSELIENVQESNVDALVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L    +QD+    K    + + P     A +ALV LGY   +A+ A
Sbjct: 121 AERLIIELRDK---LGQAAKQDLFSTPKVLKQVQADPRQ--EAEAALVALGYKPQEASKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V    ++ +D   II+ AL+ +
Sbjct: 176 VAKV---PQDGSDSETIIKAALKGM 197


>gi|255263783|ref|ZP_05343125.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62]
 gi|255106118|gb|EET48792.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62]
          Length = 220

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 13/215 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D+VLIDV+GV Y++Y   R ++ L   G+   LF +  +R+D ++L
Sbjct: 1   MIGKIAGRIDYRAADHVLIDVRGVGYVVYVSDRVMASLPGNGEAVALFTDLLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ +M +L  I A  +  +I L +   IA   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASMAILGAIGAEGVSRAIALGDWAAIATAKGVGPKT 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHI-CSMPSFAIN--------AISALV 168
           A R + +LK KA   +++   + +    V  E   I  + P    +        A+SAL 
Sbjct: 121 AQRAVLDLKNKAHAVMAMGGTLAEAQGEVEAEGEVIETAAPKVTRSGNGAAQSEALSALG 180

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           NLGY    A  AV        + AD S++IR AL+
Sbjct: 181 NLGYSPSDAAGAVAEASGGAPD-ADTSELIRAALK 214


>gi|77919931|ref|YP_357746.1| Holliday junction DNA helicase RuvA [Pelobacter carbinolicus DSM
           2380]
 gi|90135490|sp|Q3A231|RUVA_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77546014|gb|ABA89576.1| Holliday junction DNA helicase subunit RuvA [Pelobacter
           carbinolicus DSM 2380]
          Length = 197

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 8/165 (4%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++DV GV Y +  P+ T   L   GD   L V TH+R+D + LFGFL++ ++  F LL 
Sbjct: 17  VILDVGGVGYRLLIPLSTYYALPDEGD-VRLRVHTHVREDALLLFGFLTETEKDLFGLLL 75

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           SV GVG +VA+ +LS + A +L +++   N+K +A +PGI  K A R++ EL+ K   + 
Sbjct: 76  SVSGVGPKVALNILSHLPAADLQQALSQGNAKHLATVPGIGKKTAERLVLELREKVGPVQ 135

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           +V     + +  E A          +A+SALVNLGY ++ +  A+
Sbjct: 136 AVPGN--APLPAETAG-----DLREDALSALVNLGYKENLSRKAL 173


>gi|77460629|ref|YP_350136.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf0-1]
 gi|90135610|sp|Q3K7V9|RUVA_PSEPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77384632|gb|ABA76145.1| holliday junction helicase subunit B [Pseudomonas fluorescens
           Pf0-1]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 114/207 (55%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R +F  L  + GVG ++A+ ++S +   EL+  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAGKRERDFFRELIRLNGVGPKLALALMSSLEVDELIRCVQSQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK   KA   S  +    + V  +      + +   +A+SAL++LGY   +A+
Sbjct: 121 AERLLVELKNRFKAWETSPAM---FALVPNQPDGPAPVNTAENDAVSALISLGYKPQEAS 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+ ++  KEK ++ +  +IR AL+ +
Sbjct: 178 KAISAI--KEKGLSSED-MIRRALKGM 201


>gi|257068561|ref|YP_003154816.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium
           faecium DSM 4810]
 gi|256559379|gb|ACU85226.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium
           faecium DSM 4810]
          Length = 205

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D ++++V G+ Y++    + LS   + G   TL  E  +R+D + L
Sbjct: 1   MIASLTGRVARIDLDSLVLEVGGIGYLVRTTPQALSAT-RHGAELTLHTELVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F ++QSV G+G R A+ VL+ +   EL  ++  Q++K I + PGI  K+
Sbjct: 60  FGFPQLEEAETFRIVQSVSGIGPRTALAVLAVLEPEELRRAVAEQDAKTITRTPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179
           A R++ EL GK  + +S+     +      A   + PS A  + + ALV LG+ +  A  
Sbjct: 120 AGRMLLELGGKLPAPASL----SAVPGTPAAEAPATPSGADADVVEALVGLGWAEKAALK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV S    +    D ++++R ALR +
Sbjct: 176 AVESARADDGAELDSAELLRRALRGL 201


>gi|56460194|ref|YP_155475.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           loihiensis L2TR]
 gi|81363131|sp|Q5QYU4|RUVA_IDILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56179204|gb|AAV81926.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           loihiensis L2TR]
          Length = 205

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +       V++DVQG+ Y I  P+     L  +G+   L     +R+D   L
Sbjct: 1   MIGHIQGVLTSKQPPEVVLDVQGIGYEIQLPMTCFYQLPPVGETIKLITHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL   QGVG ++A+ +LS ++A E V ++   +   + ++PG+  K 
Sbjct: 61  YGFISASERSLFRLLLKTQGVGPKLALAILSGMSADEFVMAVNQNDVTRLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQAT 178
           A R++ E++ +      S    D + ++ +       P+ A  +AISAL +LGY ++QA 
Sbjct: 121 AERLVIEMRDRLKDWQPSTPFTDRAPLDSQGMDAREHPADARTDAISALQSLGYKENQAE 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+  V   E N      +IRLAL+ +S
Sbjct: 181 KALQKVYSAEHN---SETLIRLALKQLS 205


>gi|162146622|ref|YP_001601081.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543386|ref|YP_002275615.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189045754|sp|A9HAV7|RUVA_GLUDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161785197|emb|CAP54743.1| putative holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531063|gb|ACI51000.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 200

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 79/132 (59%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  ++DV GV Y+++   RTLS L +  D   + VET +R+D   L
Sbjct: 1   MIAHLTGLVGQMESDRCVVDVGGVGYLVHASTRTLSALPRPPDVTRVLVETVVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R WF LL +VQGVGA+VA+ +LS ++  +L   I   +   + ++ G+  ++
Sbjct: 61  YGFAEAAERDWFRLLTTVQGVGAKVALAILSALSPGDLAGVIAAADKASLTRVSGVGARL 120

Query: 121 ASRIMTELKGKA 132
           A RI+TEL+ KA
Sbjct: 121 AERILTELRDKA 132


>gi|187479251|ref|YP_787276.1| Holliday junction DNA helicase RuvA [Bordetella avium 197N]
 gi|123765963|sp|Q2KVY6|RUVA_BORA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115423838|emb|CAJ50389.1| holliday junction DNA helicase [Bordetella avium 197N]
          Length = 190

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV G+ Y I  P+ TL  L   G   TLF    +R+D   L
Sbjct: 1   MIGRITGTLIEKTPPVVYVDVNGIGYEIDVPMSTLYALPDTGARVTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++  EL ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFGTASERAAFRELVKVSGIGARTALAVLSGMSVAELAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK   L + +      V   Q+ I          ++AL+ LGY + + + A
Sbjct: 121 AERLLLEMRGK---LGADIGATPHAVPDSQSDI----------LNALLALGYSEKE-SLA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +  L +   ++D    IR AL+A++
Sbjct: 167 ALKTLPEGLGVSDG---IRQALKALA 189


>gi|222055417|ref|YP_002537779.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32]
 gi|254766963|sp|B9LZC5|RUVA_GEOSF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221564706|gb|ACM20678.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32]
          Length = 199

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D++++DV GV Y +  P  T   L + G   +L + TH+++D I L
Sbjct: 1   MIALLTGKLAHKSPDFIILDVNGVGYRVQIPFSTYYALPEGGSSVSLNIFTHVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL SV G+G ++  G+LS I A  L +++I  +   +A IPGI  K 
Sbjct: 61  YGFRTMEEKEMFQLLISVSGIGPKLGNGILSNIEAQNLSDALIRGDLARLATIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ EL+ K   L    +QQD++  +   AH         + +SALVNLGY +     
Sbjct: 121 AERLVLELREKVKKLGHGPLQQDVAPAD---AH----NDMRDDVVSALVNLGYKE----- 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AVV     E  +A D+ +  L  +A+
Sbjct: 169 AVVQKTVDEIGVAADATVESLLKQAL 194


>gi|261855148|ref|YP_003262431.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus
           c2]
 gi|261835617|gb|ACX95384.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus
           c2]
          Length = 206

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +      ++L+DVQGV Y +  P+ TL  L   G   TL + T +R+D   L
Sbjct: 1   MIGRLKGILVNKQPPWILLDVQGVGYEVEVPLSTLFDLPANGQEATLLIHTVVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +++R+ F  L  V GVGA++A+GVLS + A E   +I   +   + ++PG+  K 
Sbjct: 61  YGFSREVERKLFRHLLKVTGVGAKLALGVLSGMNAEEFAGAIARNDIAALIRLPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ + ++        ++    +   +  +      A+SAL  LGY   ++   
Sbjct: 121 AERLVIEMRDR-LAEGFFDGATLATAAGKMGDVVPLAGADQEAMSALEALGYKPAESQRM 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V   E    +  QIIRLAL+  +
Sbjct: 180 VKAVPGAETLPVE--QIIRLALKPFA 203


>gi|88800180|ref|ZP_01115748.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297]
 gi|88777026|gb|EAR08233.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297]
          Length = 201

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+DV G+ Y I CP+ T+  L   G+  TL     +R+D   L
Sbjct: 1   MIGRIQGTLLENKAPELLVDVHGLGYEIQCPLSTIFALPATGEIVTLHTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG ++A+ +LS +     ++SI  Q+   + +IPG+  K 
Sbjct: 61  YGFATQKERTLFRTLIKISGVGPKLALAILSGMETNRFIQSIQDQDPGALVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI--CSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K K   L S   Q    +   +A +   S      +A  AL+ LGY   QA+
Sbjct: 121 AERLIVEMKDKLAQLGS---QGAELITPMEALVEKNSRTDALQDAEGALIALGYKPTQAS 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +V     +  D   IIR AL+A+
Sbjct: 178 KAVSNVAADGMSSED---IIRAALKAM 201


>gi|224827243|ref|ZP_03700337.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002]
 gi|224600532|gb|EEG06721.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002]
          Length = 197

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DV GV Y +  P+ T   L  +G+  TL+    +R+D   L
Sbjct: 1   MIGRLTGQLIEKLPPQIVVDVGGVGYEVDVPMSTFYLLPALGEKTTLYTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R+ F  L  V G+GA++A+ +LS ++A EL  ++  ++ K ++ +PGI  K 
Sbjct: 61  FGFASKGERETFRQLIKVGGIGAKIALAILSGLSADELALAVASEDLKRLSSVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK  +  +V                + P    + ++AL+ LGY  D+   A
Sbjct: 121 AERLVLELRGKLATGGAVTTPG-------GLPFAATPDDKSDIVNALLALGY-NDKEAAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               L  E  ++D    +RLAL+++
Sbjct: 173 ATKCLPPEVTVSDG---VRLALKSL 194


>gi|296132699|ref|YP_003639946.1| Holliday junction DNA helicase RuvA [Thermincola sp. JR]
 gi|296031277|gb|ADG82045.1| Holliday junction DNA helicase RuvA [Thermincola potens JR]
          Length = 200

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 14/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  + EDY++IDV GV Y +Y P   +  L   G   T+F   ++R+D ++L
Sbjct: 2   MISFLRGELNYIGEDYIIIDVHGVGYKVYVPASFIGKLPACGQPVTVFTHLYVREDVMQL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    + + F +L  V G+G +VA+ VLS + A+   ++I+ +   V+ Q+PGI  K 
Sbjct: 62  YGFPDREELELFEVLLQVSGIGPKVAVSVLSAVPASSFKQAIVNEQVGVLTQVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---AISALVNLGYGQDQA 177
           A R++ ELK K   L    Q      N           FA N   A+ AL+ LGY  ++A
Sbjct: 122 AQRMILELKDKLGKLPGRGQAPPVSAN-----------FAPNTEEAVQALIALGYAPNEA 170

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
             AV  V+     +  +  I +  L 
Sbjct: 171 RKAVNKVVNTHPELGVEESIKKALLE 196


>gi|254516709|ref|ZP_05128768.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3]
 gi|219675132|gb|EED31499.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3]
          Length = 203

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   +L+DV GV Y I  P+ TL  L  +GD  TL     +R+D   L
Sbjct: 1   MIGRISGTLLHKHPPEILVDVAGVGYEIQVPMTTLFQLPALGDAVTLLTHHAVREDAQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ DR+ F  L  V GVG ++A+ +LS + +     ++   +   +  +PG+  K 
Sbjct: 61  YGFVSERDRELFRHLIKVSGVGPKLALTILSGMDSDSFARAVQADDLTALVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   LS  + + ++      A          +A  ALV+LGY   +A   
Sbjct: 121 AERLLIEMRDR---LSGWLDK-ITDTGGGMARPIPASDKLSDAEEALVSLGYKPAEAARL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V     +I D  ++IRLALR+
Sbjct: 177 VARV--DNDDITDSEELIRLALRS 198


>gi|83647602|ref|YP_436037.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396]
 gi|123739873|sp|Q2SCL2|RUVA_HAHCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83635645|gb|ABC31612.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396]
          Length = 204

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 113/212 (53%), Gaps = 19/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +  +VL+DV GV Y +  P+  L  L K+G+ C+LF    +R+D   L
Sbjct: 1   MIGRLVGKLAENHPPFVLLDVNGVGYEVEVPLSALGYLPKLGESCSLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR+ F LL  V GVG ++A+ +LS ++  E VE +   N   + ++PG+  K 
Sbjct: 61  YGFIRREDRELFRLLLKVNGVGPKMAVAILSHMSPNEFVECVRGDNLTRLTKMPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-------ALVNLGYG 173
           A R++ E++ +         +D    ++E A    + S A+   S       AL+ LGY 
Sbjct: 121 AERLLIEMRDRI--------KDWGAGDRETA-TPELLSQAVGGHSHLEEAEAALLALGYK 171

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             +A+ A+ +V    K+     ++IRLAL+ +
Sbjct: 172 PQEASRAINAV---NKDGMGRDELIRLALKGM 200


>gi|325579043|ref|ZP_08148999.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159278|gb|EGC71412.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 203

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 102/209 (48%), Gaps = 15/209 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DVQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLTGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSFAINAISALVNLGYGQ 174
           A R++ ELKGK      V Q D    +K   HI S        S A  A++ALV LGY  
Sbjct: 121 AERLLVELKGK---FKDVRQSDFFVESK---HIPSTSELRQAESSADEAVAALVALGYKP 174

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALR 203
             A   V  V K +       Q+IR AL+
Sbjct: 175 TDAEKMVKKVAKADLT---SEQLIREALK 200


>gi|319775819|ref|YP_004138307.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047]
 gi|317450410|emb|CBY86626.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047]
          Length = 204

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173
           A R++ ELKGK      V Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A   V  V+K E       Q+IR AL+A
Sbjct: 175 PAEAEKMVKRVVKPE---LTSEQVIREALKA 202


>gi|187778348|ref|ZP_02994821.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC
           15579]
 gi|187771973|gb|EDU35775.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC
           15579]
          Length = 197

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ ++ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K I +  V   D   +NK      +     + AI+ALV LGY + +A   
Sbjct: 121 AQRIILELKDK-IEIDIVEDDDEEIINK-----ITDDKKVLEAIAALVTLGYSEKEA-NK 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V++   K+ ++    QII+ AL+
Sbjct: 174 VINQCDKDNSL---EQIIKEALK 193


>gi|296390675|ref|ZP_06880150.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAb1]
          Length = 201

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK---EQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELK +  +      Q+M  +     E     ++ S   +A+SAL+ LG+   +A
Sbjct: 121 AERLLVELKDRFKAW-----QNMPTIAPLVMEPRGSATVSSAEADAVSALIALGFKPQEA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + AV +V  ++ +     ++IR AL+ +
Sbjct: 176 SRAVAAVPGEDLS---SEEMIRQALKGM 200


>gi|329123663|ref|ZP_08252223.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           aegyptius ATCC 11116]
 gi|327469862|gb|EGF15327.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           aegyptius ATCC 11116]
          Length = 204

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-------CSMPSFAINAISALVNLGYG 173
           A R++ ELKGK      V Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIRLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A   V  V+K E       Q+IR AL+A
Sbjct: 175 PAEAEKMVKRVVKPE---LTSEQVIREALKA 202


>gi|269797654|ref|YP_003311554.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008]
 gi|269094283|gb|ACZ24274.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008]
          Length = 202

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 113/202 (55%), Gaps = 7/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      +II    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +   Q    +    A  AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKIAKMTHISAESPAAI---QPIGVTASGAAGEAIEALVSLGYSERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V S+   ++++   S++I+++L
Sbjct: 177 VESLDDGKRDV---SELIKVSL 195


>gi|170759601|ref|YP_001788391.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|229560024|sp|B1L0B3|RUVA_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169406590|gb|ACA55001.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 197

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 111/201 (55%), Gaps = 10/201 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I ++GFL
Sbjct: 5   IKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGIYGFL 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +   F LL ++ GVGA+ A+ +LS    + L  +I + + K I + PGI  K A RI
Sbjct: 65  TKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKTAQRI 124

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + ELK K I +    + D   +NK      +     + A++ALV LGY + +A + V+++
Sbjct: 125 ILELKDK-IEIDISEEDDEQIINK-----VTDDKKVLEAVAALVTLGYSEKEA-SKVINL 177

Query: 185 LKKEKNIADDSQIIRLALRAI 205
             K  ++    QII+ AL+ +
Sbjct: 178 CDKNNSL---EQIIKEALKHL 195


>gi|148381022|ref|YP_001255563.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931785|ref|YP_001385393.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936604|ref|YP_001388800.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           Hall]
 gi|166230541|sp|A7FY20|RUVA_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230542|sp|A5I6F2|RUVA_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148290506|emb|CAL84634.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC
           3502]
 gi|152927829|gb|ABS33329.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932518|gb|ABS38017.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           Hall]
          Length = 197

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ A+ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K I +  + + D   +NK      +     + A++ALV LGY + +A   
Sbjct: 121 AQRIILELKDK-IEIDILEEDDEQIINK-----VADDKKVLEAVAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + S    +KN + + QII+ AL+
Sbjct: 175 INSC---DKNNSLE-QIIKEALK 193


>gi|168181761|ref|ZP_02616425.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf]
 gi|237796527|ref|YP_002864079.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str.
           657]
 gi|259495636|sp|C3KTD3|RUVA_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|182675197|gb|EDT87158.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf]
 gi|229263209|gb|ACQ54242.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str.
           657]
          Length = 197

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 111/203 (54%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ A+ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K I +  + + D   +NK      +     + A++AL+ LGY + +A   
Sbjct: 121 AQRIILELKDK-IEIDILEEDDEQTINK-----VTDDKKVLEAVAALITLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + S    +KN + + QII+ AL+
Sbjct: 175 INSC---DKNNSLE-QIIKEALK 193


>gi|94971750|ref|YP_593798.1| Holliday junction DNA helicase RuvA [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553800|gb|ABF43724.1| Holliday junction DNA helicase subunit RuvA [Candidatus Koribacter
           versatilis Ellin345]
          Length = 202

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 14/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +I  ++G I     + V++D  GV Y +   + T S LG  G   +L+V TH+R+D + L
Sbjct: 10  VIAHLRGKILAKRPNQVIVDCGGVGYDVTISVPTFSELGADGTEASLYVHTHVREDALAL 69

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++Q F  L +V G+G ++A+ VLS + A E+V +I   +   + +IPG+  K 
Sbjct: 70  YGFVHPQEKQLFERLLTVSGIGPKLAITVLS-MAANEVVGAIRGNDVTRLTKIPGVGKKT 128

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  +  +  +   +   +E            + ISALVNLGY +  A  A
Sbjct: 129 AERMILELKDKLETFGATPEIPKASQAEE------------DVISALVNLGYQRAAAEQA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   LK   + A D Q+ R AL  +S
Sbjct: 177 VTRALKTGSSSAFD-QLFRGALGMLS 201


>gi|238916873|ref|YP_002930390.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC
           27750]
 gi|259495642|sp|C4Z030|RUVA_EUBE2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|238872233|gb|ACR71943.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC
           27750]
          Length = 207

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +  D ++++  G+ Y IY P      L  +G    ++   ++++D+  L
Sbjct: 1   MISYIKGELAEILPDVIVVEANGIGYNIYVPGSVPGELPSVGSEVKIYTYMNVKEDECSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F +L  V G+G + A+G LS ITA +L  +++  +   I  +PGI  K 
Sbjct: 61  FGFLTRDDLSMFKMLICVNGIGPKAALGALSNITADDLRFAVLADDVAAIKALPGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK--EQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +I+ ELK K + L  V +  +S   K    +++ ++     +A+ ALV+LGY    A 
Sbjct: 121 AQKIIIELKDK-LKLDEVFESALSKNKKADNNSNVSNVMMIRNDAVEALVSLGYSSKDAL 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV  V   E    D   +++ AL+ +
Sbjct: 180 VAVKEVEDIENK--DSETVLKEALKKL 204


>gi|113460415|ref|YP_718477.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 129PT]
 gi|170717663|ref|YP_001783495.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336]
 gi|123131938|sp|Q0I1M4|RUVA_HAES1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045755|sp|B0UVK3|RUVA_HAES2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|112822458|gb|ABI24547.1| Holliday junction DNA helicase subunit RuvA [Haemophilus somnus
           129PT]
 gi|168825792|gb|ACA31163.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336]
          Length = 204

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DVQGV Y +  P+ +   L ++G   TLF    +R+D   L
Sbjct: 1   MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E V +I  +    + +IPG+  K 
Sbjct: 61  FGFSHKQDRSLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAI---NAISALVNLGYGQDQ 176
           A R++ ELKGK      + Q D    +     I CS    ++    A+SAL+ LGY   +
Sbjct: 121 AERLLVELKGK---FKGLQQTDFFIKSSHLPGIKCSKLDQSLQLDEAVSALIALGYKPIE 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A   V  VLK +       Q+IR AL+A
Sbjct: 178 AEKMVKKVLKAD---LTSEQLIREALKA 202


>gi|332285258|ref|YP_004417169.1| Holliday junction DNA helicase motor protein [Pusillimonas sp.
           T7-7]
 gi|330429211|gb|AEC20545.1| Holliday junction DNA helicase motor protein [Pusillimonas sp.
           T7-7]
          Length = 192

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV GV Y I  P+ TL  L   G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKTPPIVCVDVGGVGYEIDVPMSTLYDLPDNGATITLYTHLAVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R  F  L  V G+GAR A+ VLS ++  EL  +I  Q + ++ ++PGI  K 
Sbjct: 61  YGFLSSKERSAFRALIKVTGIGARTALAVLSGMSVDELANAITQQETGLLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK   L   +      V   +  I          ++AL++LGY   +   A
Sbjct: 121 AERLLLELRGK---LGGDLAHGAGTVAAGRDDI----------LNALLSLGYSNSETQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK      D ++ IRLAL++++
Sbjct: 168 ----LKNLPEGVDVAEGIRLALKSLA 189


>gi|125972705|ref|YP_001036615.1| Holliday junction DNA helicase subunit RuvA [Clostridium
           thermocellum ATCC 27405]
 gi|256004864|ref|ZP_05429838.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM
           2360]
 gi|281416893|ref|ZP_06247913.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20]
 gi|166230544|sp|A3DBU3|RUVA_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|125712930|gb|ABN51422.1| Holliday junction DNA helicase subunit RuvA [Clostridium
           thermocellum ATCC 27405]
 gi|255991174|gb|EEU01282.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM
           2360]
 gi|281408295|gb|EFB38553.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20]
 gi|316941059|gb|ADU75093.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM
           1313]
          Length = 202

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 114/207 (55%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +E    D+++++  GV Y I+  + T+S +G+IG    ++   ++R+D I L
Sbjct: 1   MFAYIRGRLEYKNNDFLIVESNGVGYRIFTSLSTISGIGEIGQEVKVYTYLYVREDVISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL SV GVG + A+ VLS I+ +    ++I  + K + +  GI  KI
Sbjct: 61  YGFLTQEELNVFELLISVSGVGPKAAVSVLSAISPSRFSLAVITDDVKTLTKAQGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A RI+ ELK K I    + +   S   +E   +    S  +  A+SAL+ LGY   +A  
Sbjct: 121 AQRIILELKDK-IKKEQLTEYAQS---EEGGKVLDTDSSKMAEAVSALMVLGYSPAEANK 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV +V +++ +I     II+ AL+ ++
Sbjct: 177 AVSAVYREDMDI---ETIIKNALKGLA 200


>gi|15596163|ref|NP_249657.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
 gi|107100423|ref|ZP_01364341.1| hypothetical protein PaerPA_01001448 [Pseudomonas aeruginosa PACS2]
 gi|116048891|ref|YP_792308.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152985106|ref|YP_001349891.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7]
 gi|218893063|ref|YP_002441932.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58]
 gi|254239314|ref|ZP_04932637.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719]
 gi|254245249|ref|ZP_04938571.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192]
 gi|313105853|ref|ZP_07792116.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016]
 gi|2498872|sp|Q51425|RUVA_PSEAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122257998|sp|Q02IC8|RUVA_PSEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230585|sp|A6VA06|RUVA_PSEA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725446|sp|B7UXW6|RUVA_PSEA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|9946873|gb|AAG04355.1|AE004530_8 Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
 gi|1183841|dbj|BAA11818.1| Holliday junction binding protein [Pseudomonas aeruginosa]
 gi|115584112|gb|ABJ10127.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171245|gb|EAZ56756.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719]
 gi|126198627|gb|EAZ62690.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192]
 gi|150960264|gb|ABR82289.1| holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7]
 gi|218773291|emb|CAW29103.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58]
 gi|310878618|gb|EFQ37212.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016]
          Length = 201

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 113/205 (55%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL+ LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWENM--PTIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V  ++ +     ++IR AL+ +
Sbjct: 179 VAAVPGEDLS---SEEMIRQALKGM 200


>gi|218288865|ref|ZP_03493116.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240954|gb|EED08131.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 208

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 7/193 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L   YV +DV+ V Y ++   RT + L  +GD   L+   H+R+D   L
Sbjct: 1   MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAAL-NLGDTAFLYTHHHVREDGWAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G ++A+ V+      E+V +I+ ++ + ++++PGI  K+
Sbjct: 60  YGFETSEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDVESLSRLPGIGRKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASR++ EL+ K   L+    +  S     Q       S A +A+SALV LGY   +A  A
Sbjct: 120 ASRLVVELREKLDDLAPSALRPPSSAPGSQG------STAEDAVSALVALGYRPREAEEA 173

Query: 181 VVSVLKKEKNIAD 193
           V +V +  +++ D
Sbjct: 174 VSAVGRGRQSVED 186


>gi|145634688|ref|ZP_01790397.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittAA]
 gi|145638774|ref|ZP_01794383.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittII]
 gi|148827465|ref|YP_001292218.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittGG]
 gi|260582589|ref|ZP_05850379.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127]
 gi|166230557|sp|A5UGC9|RUVA_HAEIG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145268233|gb|EDK08228.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittAA]
 gi|145272369|gb|EDK12277.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittII]
 gi|148718707|gb|ABQ99834.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittGG]
 gi|260094400|gb|EEW78298.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127]
 gi|301169022|emb|CBW28619.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus
           influenzae 10810]
 gi|309750264|gb|ADO80248.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus
           influenzae R2866]
          Length = 204

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173
           A R++ ELKGK      V Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A   V  V K E       Q+IR AL+A
Sbjct: 175 PAEAEKMVKRVAKPE---LTSEQVIREALKA 202


>gi|328953690|ref|YP_004371024.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454014|gb|AEB09843.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca
           acetoxidans DSM 11109]
          Length = 198

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 114/209 (54%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DY++I V GV Y  + P+ T   L +      L + T ++ D ++L
Sbjct: 1   MIAYLEGELFQKRPDYLIIKVGGVGYQTFIPLSTFYQLPEPPASVALHIHTQVQTDSLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F +  ++Q F+ L S+  VG R+A+ +LS I+  +L +++I  +   +A IPG+  K 
Sbjct: 61  YAFATLDEKQTFIKLLSIPRVGPRLALNILSGISPQDLAQTLIQGDIPRLAAIPGLGRKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A RIM ELKGK       ++ D + V+     + S P  A+  +A+SAL+NLGY +  A 
Sbjct: 121 AERIMVELKGK-------LRPDATAVSA----LSSGPQGALWEDALSALINLGYSRTLAE 169

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207
             +  V   EK +  + +I+RL+L  ++ 
Sbjct: 170 EVLRHVQLHEKPLTLE-EILRLSLSRLAS 197


>gi|227872463|ref|ZP_03990804.1| possible crossover junction endonuclease RuvA [Oribacterium sinus
           F0268]
 gi|227841694|gb|EEJ51983.1| possible crossover junction endonuclease RuvA [Oribacterium sinus
           F0268]
          Length = 199

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 8/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +  + ED ++I+  G+ Y +  P        K G+   L     +R+D   L
Sbjct: 1   MIRFIHGILREVKEDMLVIEAGGLGYGVRIPASVFDKAPKTGEEILLHTYFSVREDSQEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + DR +F+ L SV G+G + A+G+ S ++  EL+ +II  +SK I + PG+  K 
Sbjct: 61  FGFWEERDRDFFIKLLSVSGIGPKTALGIFSCMSREELIHAIISNDSKKIQKAPGLGKKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K      V ++D++   +E     +       A+ ALV+LGY   +A   
Sbjct: 121 AERLIVELRDK------VPKEDITFSGEEAVETTATSVAVEEAVEALVSLGYSVMEAKRW 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + S+   E+  A+  +++R++L+
Sbjct: 175 IRSIPAYEEKTAE--ELLRISLK 195


>gi|145631439|ref|ZP_01787209.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
 gi|144982976|gb|EDJ90485.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
          Length = 204

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173
           A R++ ELKGK      V Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A   V  V K E       Q+IR AL+A
Sbjct: 175 PAEAEKMVKRVAKPE---LTSEQVIREALKA 202


>gi|322807372|emb|CBZ04946.1| holliday junction DNA helicase RuvA [Clostridium botulinum H04402
           065]
          Length = 197

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 111/203 (54%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ ++ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K I +  + + D   +NK      +     + A++ALV LGY + +A   
Sbjct: 121 AQRIILELKDK-IEIDVLEENDEQTINK-----VTDDKKVLEAVAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + S    +KN + + QII+ AL+
Sbjct: 175 INSC---DKNNSLE-QIIKEALK 193


>gi|260887321|ref|ZP_05898584.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
 gi|330838926|ref|YP_004413506.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
 gi|260862957|gb|EEX77457.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
 gi|329746690|gb|AEC00047.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
          Length = 201

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L  D+  +DV GV Y ++    T   L  +G+  TLF    +R+D + L
Sbjct: 1   MIGFLRGKVARLSLDFCFLDVAGVGYRVFISGATHGRL-HMGEEVTLFTHLAVREDAMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ + + F +L SV G+G + A+G+LS IT   L  ++  + + ++ + PGI  K 
Sbjct: 60  YGFFSEEEYELFQMLISVTGIGPKAALGILSNITPENLCLAVRNKKADILTKAPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +   + +  + V +         +    A +AL++LGY Q + T  
Sbjct: 120 AERIILELKDK---MKGFMTEHEAIVEEGLLEEPVEDTMLAEAGAALLSLGYTQAEFT-- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              +L++ K+  D   +IR AL+  +
Sbjct: 175 --PILRRAKDCKDAEALIRFALKEFA 198


>gi|239628227|ref|ZP_04671258.1| holliday junction DNA helicase RuvA [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518373|gb|EEQ58239.1| holliday junction DNA helicase RuvA [Clostridiales bacterium
           1_7_47FAA]
          Length = 209

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 7/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G+ ED ++++   V   I  P      L ++G+  T++    +R+D + L
Sbjct: 1   MISYVKGPLMGIDEDSIIVEAGNVGLAIRVPASLQPELPRLGEEVTIYTYFQVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   DR  F  L  V G+G + A+G+LS +   +L  +I+ ++ K +A+ PGI  K 
Sbjct: 61  YGFLHSQDRDMFRQLIGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120

Query: 121 ASRIMTELKGKAIS----LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ +LK K IS    L S+     S V    A +  +   A  A+ ALV LGY   +
Sbjct: 121 AQRLILDLKDK-ISMDDVLGSMALSGDSGVGPAAASMAGLAEAAKEAVQALVALGYTNTE 179

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ AV  V   E   ++D  +++ +L+ +S
Sbjct: 180 ASRAVKQVEVAEGMTSED--VLKASLKHLS 207


>gi|266625272|ref|ZP_06118207.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM
           13479]
 gi|288862827|gb|EFC95125.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM
           13479]
          Length = 202

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 4/184 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  ++ED V+I+   +   I+ P+  L  L  IG    L+    +R+D + L
Sbjct: 1   MISYVKGPLVDIFEDTVVIEAGYIGLEIHVPLSVLDRLPGIGMETVLYTYFQVREDGMCL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D Q F  L SV G+G + A+GVLS +T  EL  +II  ++K I++ PGI +K 
Sbjct: 61  YGFLNRQDLQMFRQLISVSGIGPKGALGVLSAMTPDELRLAIITGDAKAISRAPGIGVKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K I ++ V+    +    E+    S    A  A+ ALV LGY   +A  A
Sbjct: 121 AQRVILDLKDK-IDMADVLPAQFAA---EEEPGISAGGVAKEAVEALVALGYSTAEANRA 176

Query: 181 VVSV 184
           V  V
Sbjct: 177 VGKV 180


>gi|332527517|ref|ZP_08403569.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus
           JA2]
 gi|332111924|gb|EGJ11902.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus
           JA2]
          Length = 192

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ T   L  +G+   L  E  +R+D  +L
Sbjct: 1   MIGRLSGTLAEKTPPQLLVDVGGVGYEVDVPMSTFYHLPALGERVVLLTEFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R  F LL  + GVG R+A+ +LS ++  EL +++  Q+   + ++PGI  K 
Sbjct: 61  FGFLTASERATFRLLVKISGVGPRMALALLSGLSVAELSQAVAAQDGARLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK       +  D+   +       +        + AL+ LGY + +A  A
Sbjct: 121 AERVLLELKGK-------LAPDLGLPSAAGGAGDAHADI----VQALMALGYNEREAQAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               L K+  +   S+ I++AL+A++
Sbjct: 170 -AKALPKDVGV---SEGIKVALKALN 191


>gi|58584509|ref|YP_198082.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|75497985|sp|Q5GT34|RUVA_WOLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58418825|gb|AAW70840.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 196

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 113/209 (54%), Gaps = 24/209 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLS-CLGKIGDFCTLFVET--HMRQDQ 57
           MIG + G ++ +Y D+++++V  V YIIY   + L+ C   IG    L +ET  + R++ 
Sbjct: 1   MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKALNVCY--IGSKIKLLIETCANNRENT 58

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            +L+GF++  ++    LL  V GV  + AM +LS++T  +L  + I+   K+  +I G+ 
Sbjct: 59  TQLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLA-IMNEDKIALKISGLG 117

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K+ +RI+TEL GK   L +    +   +N++             A+SAL+NLGY +   
Sbjct: 118 PKLINRIITELSGKVSKLET-NNNNFYPINED-------------AVSALINLGYEK--- 160

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            T V   +KK K   D   IIR AL+ +S
Sbjct: 161 -TKVYDTIKKYKPNLDTKDIIRTALKELS 188


>gi|118581082|ref|YP_902332.1| Holliday junction DNA helicase RuvA [Pelobacter propionicus DSM
           2379]
 gi|166230581|sp|A1ASF4|RUVA_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118503792|gb|ABL00275.1| Holliday junction DNA helicase subunit RuvA [Pelobacter propionicus
           DSM 2379]
          Length = 198

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 7/176 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D++++DV GV Y +  P  T   L + G   +L + T +R+D I+L
Sbjct: 1   MIALLTGQIAQKSPDHIILDVNGVGYRVQIPFSTYYDLPEEGT-VSLHIHTSVREDAIQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L++ +F LL SV GVG R+A  +LS I   +L +++   + ++++ +PGI  K 
Sbjct: 60  YGFRTSLEKSFFQLLLSVSGVGPRLARDILSNIQPAQLAQALGQGDIRMLSAVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ELK K   L      D+S V   +           + +SAL+NLGY + Q
Sbjct: 120 AERLVLELKEKVGKL------DLSSVVVPEPRQMPEDDLLEDVVSALLNLGYKEPQ 169


>gi|312897339|ref|ZP_07756765.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis
           F0359]
 gi|310621557|gb|EFQ05091.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis
           F0359]
          Length = 199

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG +E ++   V IDV GV Y +Y P+ TL+ L  +G+   L+   ++R+D I L
Sbjct: 1   MIGYVKGTVECIFASSVFIDVHGVGYRVYAPVSTLAHL-NVGEESLLYTYMNVREDAIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   FMLL  V GVG +VA G+LS         ++  ++  ++ ++PGI  K 
Sbjct: 60  YGFLTQDEYDLFMLLIGVNGVGPKVANGILSATGTDSFRAAVANKDIGLLTKMPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K   + + V    S    E + I  +        +AL  LGY + +    
Sbjct: 120 AERIVLELQDK---VGTPVSSGESEKTPEPSPIEGI---GAEVTAALAGLGYSEREIEPI 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +    K+  ++     +++  LRA+  
Sbjct: 174 IAREAKEHDSV---ESLLKACLRALGT 197


>gi|149927724|ref|ZP_01915976.1| Holliday junction DNA helicase motor protein [Limnobacter sp.
           MED105]
 gi|149823550|gb|EDM82780.1| Holliday junction DNA helicase motor protein [Limnobacter sp.
           MED105]
          Length = 196

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 16/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +      ++L+DVQGV Y +  P+ TL  L +I   CTL     +R+D   L
Sbjct: 1   MIGRLKGTLLEKNAPWILLDVQGVGYELQVPMSTLFNLPEINGSCTLLTHLVVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L  V G+G R A+ +LS I+  + + ++  Q +  + +IPGI  K 
Sbjct: 61  YGFQNIAEKNLFKTLIKVSGIGPRTALAILSSISTNDFLLAVQSQETARLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELKG+ ++L     + + M      Q+ I          + AL  LGY   +A 
Sbjct: 121 AERLLLELKGQIVALGGTANIAEGMPLPIGNQSEI----------VQALCALGYSDKEAA 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A    L +  ++ D    ++LALR +S
Sbjct: 171 LACKG-LPEGTSVTDG---LKLALRNLS 194


>gi|303231814|ref|ZP_07318530.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513521|gb|EFL55547.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 202

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + ++ +  +  S +   Q+   +    +  AI ALV+LGY Q      
Sbjct: 120 AERLVLELKDKLVKMTQISVETPSAI---QSIGVTHSGPSGEAIEALVSLGYAQKDVEAL 176

Query: 181 VVSVLKKEKNIA 192
           V S+    K+++
Sbjct: 177 VESLNDGSKDVS 188


>gi|153938510|ref|YP_001392349.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str.
           Langeland]
 gi|168179565|ref|ZP_02614229.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC
           2916]
 gi|170754638|ref|YP_001782706.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str.
           Okra]
 gi|226950500|ref|YP_002805591.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str.
           Kyoto]
 gi|166230543|sp|A7GHT9|RUVA_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560023|sp|B1IMF4|RUVA_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766953|sp|C1FKG2|RUVA_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152934406|gb|ABS39904.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str.
           Langeland]
 gi|169119850|gb|ACA43686.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str.
           Okra]
 gi|182669614|gb|EDT81590.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC
           2916]
 gi|226841819|gb|ACO84485.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str.
           Kyoto]
 gi|295320341|gb|ADG00719.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str.
           230613]
          Length = 197

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 111/203 (54%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ ++ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K I +  + + D   +NK      +     + A++ALV LGY + +A   
Sbjct: 121 AQRIILELKDK-IEIDILEEDDEQIINK-----VTDDKKVLEAVAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + S    +KN + + QII+ AL+
Sbjct: 175 INSC---DKNNSLE-QIIKEALK 193


>gi|152979457|ref|YP_001345086.1| Holliday junction DNA helicase motor protein [Actinobacillus
           succinogenes 130Z]
 gi|171704337|sp|A6VQA4|RUVA_ACTSZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150841180|gb|ABR75151.1| Holliday junction DNA helicase RuvA [Actinobacillus succinogenes
           130Z]
          Length = 204

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 18/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DVQG+ Y +  P+ +   L   G  CT+F    +R+D   L
Sbjct: 1   MIGRLQGKLIEKQPPEILLDVQGIGYELLLPMTSFYNLPDTGQECTVFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFSTKTDRTLFRELIKTNGVGPKLALAILSAMSVHEFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--QAHICSMPSFAIN--AISALVNLGYGQDQ 176
           A R++ ELKGK      + Q D    +K      I S      N  A++ALV LGY   +
Sbjct: 121 AERLLVELKGK---FKGLRQPDFFVESKHITVPDIVSAEKETPNDEAVAALVALGYKPPE 177

Query: 177 ATTAVVSVLKKEKNIAD----DSQIIRLALRA 204
           A   V       K +A+      Q+IR AL+A
Sbjct: 178 AAKMV-------KKVANGDLTSEQLIREALKA 202


>gi|68248920|ref|YP_248032.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae
           86-028NP]
 gi|81336669|sp|Q4QNM5|RUVA_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68057119|gb|AAX87372.1| holliday junction DNA helicase RuvA [Haemophilus influenzae
           86-028NP]
          Length = 204

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173
           A R++ ELKGK      + Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGIKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A   V  V K E       Q+IR AL+A
Sbjct: 175 PAEAEKMVKRVAKPE---LTSEQVIREALKA 202


>gi|49082750|gb|AAT50775.1| PA0966 [synthetic construct]
          Length = 202

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 113/205 (55%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALTLMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL+ LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWENM--PTIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V  ++ +     ++IR AL+ +
Sbjct: 179 VAAVPGEDLS---SEEMIRQALKGM 200


>gi|294054968|ref|YP_003548626.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614301|gb|ADE54456.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis
           DSM 45221]
          Length = 199

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 108/204 (52%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG ++      V++DV+GV Y ++ P+ T   +  +G+ C LF+ +  R+D   L
Sbjct: 1   MIARLKGTVDESTPLLVVLDVKGVGYEVHIPVTTAEQIPAVGETCNLFIHSVYREDSATL 60

Query: 61  FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S  DR +F LL + V G+G ++ + +LSR++   L  +I   +  ++++ PGI  K
Sbjct: 61  YGFASREDRDFFRLLVEKVSGIGPKIGISILSRMSVNVLQAAIASSDVALLSKCPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K  + +       +  +K  A+  +  +F  +A+ +L  LGY    A  
Sbjct: 121 TAERLVIELKDKVYTQA----PSSNTSSKHNANPDTSSAFQ-DAVGSLTTLGYKNADADK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +    ++    A    +IR AL+
Sbjct: 176 LIRKAAQRIGTDASVEDLIREALK 199


>gi|134299518|ref|YP_001113014.1| Holliday junction DNA helicase RuvA [Desulfotomaculum reducens
           MI-1]
 gi|172044284|sp|A4J536|RUVA_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134052218|gb|ABO50189.1| Holliday junction DNA helicase subunit RuvA [Desulfotomaculum
           reducens MI-1]
          Length = 199

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +      +V+IDV G+ Y +  P  T   L  +G    LF    +R+D I+ 
Sbjct: 1   MIAYIKGLLAADGPGWVVIDVNGIGYHVSIPSTT--QLPALGHEVKLFTHMSVREDGIQF 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + +++ F+LL +V GVG +VA+ V+S +  + L  +I +++   + ++PG+  K 
Sbjct: 59  FGFAKEDEKECFLLLLNVAGVGPKVALAVVSHLPPSNLRSAIAIEDVNQLVKVPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +++V    +     +Q+ I +       A+ AL+ LGY Q +A  A
Sbjct: 119 AQRILLELKDKLKGMAAVEHSTL-----QQSVITT--GSGDEAVEALLALGYSQGEARDA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    K      D S +I++AL+ ++
Sbjct: 172 VKKAQKSAPE-EDLSALIKIALKELA 196


>gi|210615646|ref|ZP_03290692.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787]
 gi|210150189|gb|EEA81198.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787]
          Length = 203

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 104/181 (57%), Gaps = 4/181 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + ED +++DV G+ Y I+ P +++  L  IG+   +    ++R+D ++L
Sbjct: 1   MISYIRGELSAIEEDKIIVDVNGIGYGIFMPGQSMGMLPPIGEEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS+++  +L  +++  ++K I+  PGI  K 
Sbjct: 61  FGFLTRDDLKIFKLVIGVSGIGPKGGLSILSQLSPDDLRFAVLANDAKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A +++ ELK K +S+  +++++   V  E A +    +     A+ AL  LGYG  ++  
Sbjct: 121 AEKLIIELKDK-LSVEDILEKNSETV--EYAGVADTANEVQAEAVQALTALGYGSTESMK 177

Query: 180 A 180
           A
Sbjct: 178 A 178


>gi|58617428|ref|YP_196627.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Gardel]
 gi|75356743|sp|Q5FG40|RUVA_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58417040|emb|CAI28153.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Gardel]
          Length = 191

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 123/208 (59%), Gaps = 20/208 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58
           MIG I GN+E + + Y++++V  + YIIY   + L +C  K+GD   L++ET++ +D I 
Sbjct: 1   MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQTC--KVGDNIKLYIETYVNRDNIT 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GFL+  ++ +F +L ++ G+  + A+ +LS+++  E + S ++ N K+  +  GI  
Sbjct: 59  QLYGFLNRQEQDYFKMLVTINGINYKTALSILSKLSP-EQIFSAVVNNDKIAFKGNGIGE 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+A RI+TEL+ K   +   +++  S +  +            ++++AL++LGY + +A 
Sbjct: 118 KLAGRIITELQYKINKMP--IEETFSIIEND------------DSLAALISLGYEKLKAF 163

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             V+  +K +   A   ++IR AL+ +S
Sbjct: 164 N-VIQEIKSKTPDASTQEVIRKALQKLS 190


>gi|257465001|ref|ZP_05629372.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202]
 gi|257450661|gb|EEV24704.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202]
          Length = 200

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 16/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEDTTIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRMLFRELIKTNGVGPKLALAILSAMSVSQFASAVENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQA 177
           A R++ ELKGK   LS   Q D+     EQ H   M S A     A  AL+ LGY    A
Sbjct: 121 AERLLVELKGKFKGLS---QTDLFI---EQPHETIMTSSAEPSDEARDALIALGYKPADA 174

Query: 178 TTAVVSVLKKEKNI--ADDSQIIRLALR 203
              +  V     N+  A   Q+IR AL+
Sbjct: 175 EKMIKKV-----NLVGATSEQLIREALK 197


>gi|309379780|emb|CBX21556.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 194

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATNEERQTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K     AD  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPKG----ADVGEGVRLALK 190


>gi|251793066|ref|YP_003007792.1| Holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534459|gb|ACS97705.1| holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus
           NJ8700]
          Length = 204

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQGV Y +  P+ +   L ++G   +LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYNLPEVGKQTSLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPGI  K 
Sbjct: 61  FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQD-MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ELKGK   + +    VQ D +  VN E       PS    A++AL+ LGY    
Sbjct: 121 AERLLVELKGKFKEVKTHDFFVQGDHLPSVNAETVATIE-PSN--EAVAALIALGYKPLD 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A   V  V K E       Q+IR AL+A
Sbjct: 178 AEKMVKKVSKPE---LSSEQLIREALKA 202


>gi|302035797|ref|YP_003796119.1| holliday junction DNA helicase RuvA [Candidatus Nitrospira
           defluvii]
 gi|300603861|emb|CBK40193.1| Holliday junction DNA helicase RuvA [Candidatus Nitrospira
           defluvii]
          Length = 202

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 102/190 (53%), Gaps = 6/190 (3%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V +DV GV Y +  P+ T   L    +  TL + TH+R+D I+L+GFL+  +++ F+LL 
Sbjct: 17  VTLDVHGVGYEVLIPLSTYYSLPNQHESVTLSIHTHVREDAIQLYGFLTTAEKEAFLLLT 76

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            + G+G ++ + VLS ++  +L  +I   + + +  + GI  K A+RI  ELK K   L 
Sbjct: 77  GISGIGPKLGLSVLSTLSVRDLFSAIQAGDIEKLGTVSGIGKKSAARIALELKDKVARLY 136

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
              +Q  S  + + AH    P +  +A+SALVNLGY Q     A+  + K          
Sbjct: 137 PAGEQSTSG-SGQPAH----PLYD-DALSALVNLGYRQPDVKEALKRIEKSGAMAQGLEG 190

Query: 197 IIRLALRAIS 206
           +IR AL+ ++
Sbjct: 191 VIREALKDLA 200


>gi|148825408|ref|YP_001290161.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittEE]
 gi|229846401|ref|ZP_04466509.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 7P49H1]
 gi|166230556|sp|A5UAH7|RUVA_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148715568|gb|ABQ97778.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittEE]
 gi|229810494|gb|EEP46212.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 7P49H1]
          Length = 204

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173
           A R++ ELKGK      V Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A   V  V K E       Q+IR AL+A
Sbjct: 175 PVEAEKMVKRVAKPE---LTSEQVIREALKA 202


>gi|297181902|gb|ADI18079.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           Acidobacteriales bacterium HF0200_23L05]
          Length = 198

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 17/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       +++D+ GV Y +  P+ T   LG++G    L + TH+R+D + L
Sbjct: 1   MIATLHGVLTEKNPSRLVVDISGVGYEVSVPLSTFYALGELGAEVDLRIHTHVREDALSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI--AQIPGISM 118
           FGF + L+   F  L ++ GVG R+A+ VLS +   +L+ +I  Q+S ++    IPG+  
Sbjct: 61  FGFATQLEIDLFGRLIAISGVGPRLALAVLSGLEPPDLLRAI--QDSDIVRLQGIPGVGK 118

Query: 119 KIASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           K A RI  ELK K  S  L+    +D      EQ           + +SAL+NLGY +  
Sbjct: 119 KTAERISLELKDKLPSNVLTEGETKDFKN-GTEQVR--------RDVMSALLNLGYHRPL 169

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           A  AV  VL  E +  +++  +RLALR ++
Sbjct: 170 AERAVKEVLTGEVHTFEET--LRLALRELA 197


>gi|282850099|ref|ZP_06259481.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC
           17745]
 gi|282580288|gb|EFB85689.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC
           17745]
          Length = 202

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 113/202 (55%), Gaps = 7/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      +II    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +   Q    +    A  AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKIAKMTHISSESSATI---QPIGVAANGVAGEAIEALVSLGYLERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V S+   ++++   S++I+++L
Sbjct: 177 VESLDDGKRDV---SELIKVSL 195


>gi|114047572|ref|YP_738122.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7]
 gi|117920401|ref|YP_869593.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3]
 gi|123326531|sp|Q0HUZ0|RUVA_SHESR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200264|sp|A0KWL8|RUVA_SHESA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113889014|gb|ABI43065.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7]
 gi|117612733|gb|ABK48187.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3]
          Length = 205

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLIDV GV Y +  P+ +   L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+     D   +I+ AL+++
Sbjct: 181 KAVSAAYKEG---MDSETLIKAALKSM 204


>gi|33152771|ref|NP_874124.1| Holliday junction DNA helicase motor protein [Haemophilus ducreyi
           35000HP]
 gi|38372436|sp|Q7VKV4|RUVA_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33148995|gb|AAP96513.1| Holliday junction DNA helicase RuvA [Haemophilus ducreyi 35000HP]
          Length = 201

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQG+ Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLYGKIIEKQPPEMVIDVQGIGYEVLLPMTSFYHLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   ++  +    + +IPG+  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVVQFANAVENEELVKLTKIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS----ALVNLGYGQDQ 176
           A R++ ELKGK      + Q D      E +H   + ++ I+A      AL+ LGY   +
Sbjct: 121 AERLLVELKGK---FKGIAQTDFFV---EHSHETMVATYEIDASEEARDALLALGY---K 171

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
            T A   + K  K+ A   Q+IR AL+A
Sbjct: 172 LTDAEKMIKKVHKSGATSEQLIRDALKA 199


>gi|187925318|ref|YP_001896960.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans
           PsJN]
 gi|229560013|sp|B2SYK1|RUVA_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187716512|gb|ACD17736.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans
           PsJN]
          Length = 193

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++LID  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK       +  D+  +        S    A + ++AL+ LGY + +A TA
Sbjct: 121 AERLLLELKGK-------IGADLGAMAG----AASASDHASDILNALLALGYSEKEALTA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           V       KN+      S+ I+LAL+A+S
Sbjct: 170 V-------KNVPAGTGVSEGIKLALKALS 191


>gi|149923021|ref|ZP_01911439.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica
           SIR-1]
 gi|149816142|gb|EDM75652.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica
           SIR-1]
          Length = 206

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++DV+GV Y ++  I+TL+ +   GD   L+V T++R+D I LFGF    +R  F +L 
Sbjct: 11  VILDVKGVGYELFVSIQTLAGVPAEGDEVELWVHTNVREDAITLFGFAEAEERLLFRMLT 70

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           SV  VG R A+ VL    A EL+E+I  ++S  + +IPGI  K + +I+  L  K ++L 
Sbjct: 71  SVPKVGPRNAVAVLGGFPAIELLETIAAKDSAKLVKIPGIGKKTSEQIVLTLGDKVVTLL 130

Query: 137 SVVQQDMSCVNKEQAHI--CSMPSFAINAISALVNLGY---GQDQATTAVVSVLKKEKNI 191
            +++         QA +     P F   A   L++LG+     ++A  AV + L +  N+
Sbjct: 131 ELLRAQRGGEPGTQAELLPAEAPDFGTEAREVLLSLGWKGRAVEKALVAVEAELAEGANV 190

Query: 192 ADDSQIIRLAL 202
             D+ ++R+ L
Sbjct: 191 QLDA-LVRMTL 200


>gi|301060127|ref|ZP_07200994.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2]
 gi|300445639|gb|EFK09537.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2]
          Length = 200

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 5/181 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       +++ V GV Y ++ P+ T   L +      L + TH+R+D + L
Sbjct: 1   MISYLSGTLFEKSTQSIIVQVGGVGYEVFVPLSTFYTLPEKDGPVNLHIHTHVREDALIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L++  F++L SV G+G +++  +LS + A EL+ +I   ++  +  IPGI  K 
Sbjct: 61  FGFSTKLEKSLFLMLVSVSGIGPKLSANILSGMGAEELLRAIAAGDAPRLQAIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK +A + S   Q   S V  E     +M     + +SAL+NLGY    A  A
Sbjct: 121 AERIALELKDRAAAFSEDAQMPPS-VTSETGTEKAME----DTLSALINLGYSAKMARAA 175

Query: 181 V 181
           +
Sbjct: 176 M 176


>gi|238019731|ref|ZP_04600157.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748]
 gi|237863772|gb|EEP65062.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748]
          Length = 202

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 113/202 (55%), Gaps = 7/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +   Q    +    A  AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKLAKMTHISAESPAAI---QPIGVAASGAAGEAIEALVSLGYSERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V S+   ++++   S++I+++L
Sbjct: 177 VESLDDGKRDV---SELIKVSL 195


>gi|168187973|ref|ZP_02622608.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str.
           Eklund]
 gi|169294186|gb|EDS76319.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str.
           Eklund]
          Length = 200

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 15/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   GL +DY++++   + Y IY    T++ +  I +   +++E  +R+D I +
Sbjct: 1   MFEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R  F LL ++ GVGA+ A+ +LS    + L  SI+ ++ K++ + PGI  KI
Sbjct: 61  YGFLREDERAMFNLLLTISGVGAKAALSLLSISNVSNLKVSIMQEDYKMLTRAPGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK-EQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI  ELK K   +  + ++D+  V    +  I +   +   A  ALV LG+ Q +A  
Sbjct: 121 AQRITLELKDK---IEKIYEEDVENVKDISETSIDAGRKYD-EATEALVALGFTQKEAEK 176

Query: 180 AVVSVLKKEKNIADD---SQIIRLALR 203
           A+       KNI  +    QII+ +LR
Sbjct: 177 AL-------KNIDINKTIEQIIKDSLR 196


>gi|119896893|ref|YP_932106.1| Holliday junction DNA helicase RuvA [Azoarcus sp. BH72]
 gi|166230515|sp|A1K314|RUVA_AZOSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119669306|emb|CAL93219.1| holliday junction DNA helicase [Azoarcus sp. BH72]
          Length = 199

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 17/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y +  P+ T   L   G   +L     +R+D   L
Sbjct: 1   MIGRISGLLLEKNPPQILVDAHGVGYELEVPMSTFYGLPATGTQVSLHTHLAIREDGHFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R  F  L  V G+GAR A+ VLS ++ ++L +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFATDEERTAFRQLLKVSGIGARTALAVLSGLSVSDLAQAVALQEAGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ EL+ K   +L  V    ++ V          P    + ++AL+ LGY + +A  
Sbjct: 121 AERLLLELRDKLGKALPQVAGARLAAV------AGGAPDAKSDILNALLALGYNEKEALG 174

Query: 180 AVVSVLKKEKNIADDSQI---IRLALRAIS 206
           A+       K +A+D+ +   IR AL+ +S
Sbjct: 175 AM-------KGLAEDTGVSDGIRQALKLLS 197


>gi|325981222|ref|YP_004293624.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp.
           AL212]
 gi|325530741|gb|ADZ25462.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp.
           AL212]
          Length = 193

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 22/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   VL++VQGV Y I  P+ T   L  IG   TL+    +R+D   L
Sbjct: 1   MIGRLTGKLLEKHPPQVLLEVQGVGYEIDVPMSTFYDLPTIGVEITLYTHLVIREDMHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L  + G+GAR A+ +LS ++  +L  ++ +Q+S  + ++PGI  K 
Sbjct: 61  FGFATEPERQTFRQLIKISGIGARTALALLSGLSVADLHHAVSIQDSARLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K          D++ ++ ++    +  S  +N   AL++LGY   +A+ A
Sbjct: 121 AERLLLELRDKL---------DLALLSSDRVLSSTSESDILN---ALLSLGYSDREASWA 168

Query: 181 VVSVLKKEKNIADDSQI---IRLALRAIS 206
           +       K I+ ++ +   IR AL+ +S
Sbjct: 169 I-------KQISSNAMVSDGIRQALQLLS 190


>gi|226324735|ref|ZP_03800253.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758]
 gi|225207183|gb|EEG89537.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758]
          Length = 203

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L ED V++DV GV Y I+   + +  L  +G    +    ++++D ++L
Sbjct: 1   MISYIRGELVALEEDKVIVDVGGVGYGIFMSGQAMGQLPPVGSKVKIHTYLNVKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+      F LL  V G+G +  +G+L+++T  EL  +++ ++ K I+  PGI  K 
Sbjct: 61  YGFLNRDALSVFKLLIGVSGIGPKGGLGILAQLTPDELRFAVMSKDIKAISTAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K + +  V+   +   N       +      +A+ AL  LGYG  +A  A
Sbjct: 121 AEKLIVELKDK-LKIEDVLDHQVEAANGADEDTVNAQGLQADAVQALTALGYGSTEALQA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V   E    +D  +++ AL+
Sbjct: 180 VRKVEMDESTTVED--LLKGALK 200


>gi|192360858|ref|YP_001981526.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107]
 gi|229560014|sp|B3PB58|RUVA_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190687023|gb|ACE84701.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107]
          Length = 205

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +      Y+L+DV GV Y +  P+ T   L  +G    L     + ++  +L
Sbjct: 1   MIGRLKGILIEKQPPYLLLDVNGVGYELQAPMTTFYRLPSLGHEVVLHTHLSITENLHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L  V GVG ++A+ +LS + + ++   +   N K + ++PGI  K 
Sbjct: 61  FGFAEQRDRSLFRTLIKVNGVGPKLAVAILSGMESDDIARCVRDNNIKALTRVPGIGQKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ + +    + Q DM    + QA I S       A SAL+ LGY    A   
Sbjct: 121 AERLVIELRDR-LKNWDLPQGDMLAHGEIQA-IASDNDIYAEAESALIALGYKPVDAAKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V S   K+K  A   ++IR+ALR+++
Sbjct: 179 VASA-AKQKPEARSEELIRIALRSLA 203


>gi|240949538|ref|ZP_04753878.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305]
 gi|240296111|gb|EER46772.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305]
          Length = 200

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEETTIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   LS   Q D+      +  + S    +  A  AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMASSVEPSDEARDALIALGYKPADAEKM 177

Query: 181 VVSVLKKEKNI--ADDSQIIRLALR 203
           +  V     N+  A   Q+IR AL+
Sbjct: 178 IKKV-----NLVGATSEQLIREALK 197


>gi|219669644|ref|YP_002460079.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539904|gb|ACL21643.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense
           DCB-2]
          Length = 198

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 114/209 (54%), Gaps = 20/209 (9%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQIRLFG 62
           ++G +  +  D +++DVQGV Y +  P      LGK      L + TH  +R+D++ L+G
Sbjct: 2   LRGKVWEIQADKLILDVQGVGYQLSIPY---GLLGKAHPGHELILYTHVILREDELALYG 58

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           F S  +++ F+L+ SV G+G + A+ +LS +   +   +I  +N  ++ ++PGI  K A 
Sbjct: 59  FSSAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKTAQ 118

Query: 123 RIMTEL----KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           R++ EL    KG+AI+L  +          E A      +F   A+  L+ LG+ Q++A 
Sbjct: 119 RLILELKEKFKGRAIALEGI----------EGAGSLPQAAFHSEAMETLLALGFSQEEAK 168

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207
            A+ ++    + ++ + Q +RLALR+++ 
Sbjct: 169 KALQALPDSAQALSTEEQ-VRLALRSLAA 196


>gi|297539687|ref|YP_003675456.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301]
 gi|297259034|gb|ADI30879.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301]
          Length = 192

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       VLID  GV Y    P+ T   L  IG+   +     +R+D   L
Sbjct: 1   MIGRLNGILLEKTPPLVLIDCNGVGYECEVPMSTFYNLPAIGEKVVMLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R  F  L  V G+GA+ A+ +LS ++  +LV+++ +Q++ ++ ++PG+  K 
Sbjct: 61  YGFGSDQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVAMQDTAMLTRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K           +S  N  Q       S + + ++AL++LGY + +A  A
Sbjct: 121 AERLLLELKDK------FTVAGLSPSNSNQPK-----SASSDVLNALISLGYNEREALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            V +L  +  +A+    I+LAL+++S
Sbjct: 170 -VKLLPADATVAEG---IKLALKSLS 191


>gi|113970239|ref|YP_734032.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4]
 gi|123029678|sp|Q0HIZ2|RUVA_SHESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113884923|gb|ABI38975.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4]
          Length = 205

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLIDV GV Y +  P+ +   L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKKERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALLSLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+     D   +I+ AL+++
Sbjct: 181 KAVSAAYKEG---MDSETLIKAALKSM 204


>gi|190149554|ref|YP_001968079.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249558|ref|ZP_07335765.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251815|ref|ZP_07533717.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307262875|ref|ZP_07544499.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470525|sp|B3H0C5|RUVA_ACTP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189914685|gb|ACE60937.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651632|gb|EFL81781.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860722|gb|EFM92733.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306871780|gb|EFN03500.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 201

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A R++ ELKGK      V Q D    +  +  + +     A  A  ALV LGY    A  
Sbjct: 121 AERLLVELKGK---FKGVAQSDFFEEHSVETIVATHSHDPADEARDALVALGYKLADAEK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V    K  A   Q+IR AL+A
Sbjct: 178 MIKKV---NKAGATSEQLIREALKA 199


>gi|319896645|ref|YP_004134838.1| holliday junction DNA helicase ruva [Haemophilus influenzae F3031]
 gi|317432147|emb|CBY80498.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3031]
          Length = 204

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173
           A R++ ELKGK      + Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGIKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A   V  V K E       Q+IR AL+A
Sbjct: 175 PAEAEKMVKLVAKPE---LTSEQVIREALKA 202


>gi|147919262|ref|YP_687002.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           methanogenic archaeon RC-I]
 gi|110622398|emb|CAJ37676.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 201

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 12/184 (6%)

Query: 1   MIGKIKGNIEGLYE--DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQ 57
           MI  I+G I+   E  + V+I+  G+ Y ++ P   L  L + G+ C L++ T+ R+ D 
Sbjct: 1   MIAHIEGKIDAKSESEEVVVIEAGGIGYEVHVPTPVLDQLPQEGEDCKLYIHTNFREEDG 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  DR +F LL +V G+G +V +G++S  T  E+ E+I+ ++ K + ++ G+ 
Sbjct: 61  TTLYGFATIQDRDFFRLLLTVSGIGPKVGLGIMSGATVEEIAEAIVTEDLKTLTRMNGVG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A R++ ELK K   L  ++      V  + A        + +A+ ALV LGY +  A
Sbjct: 121 KKTAQRLVLELKDKVAKL-RIMHHAKKQVKGDTA--------SADAVDALVALGYSRQVA 171

Query: 178 TTAV 181
           + AV
Sbjct: 172 SDAV 175


>gi|317402225|gb|EFV82814.1| Holliday junction DNA helicase [Achromobacter xylosoxidans C54]
          Length = 190

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV G+ Y I  P+ TL  L + G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTVCVDVNGLGYDIDVPMSTLYSLPETGARVTLYTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++  +L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFATAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK   L + +      V+  Q+ I          ++AL+ LGY + ++ +A
Sbjct: 121 AERLLLEMRGK---LGADIGATAHAVHDNQSDI----------LNALLALGYSEKESLSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +  L +   ++D    I+ AL+A+
Sbjct: 168 -LKTLPEGVGVSDG---IKQALKAL 188


>gi|148263482|ref|YP_001230188.1| Holliday junction DNA helicase RuvA [Geobacter uraniireducens Rf4]
 gi|146396982|gb|ABQ25615.1| Holliday junction DNA helicase subunit RuvA [Geobacter
           uraniireducens Rf4]
          Length = 199

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 8/175 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D++++D+ GV Y +  P  T   L   G   TL + TH+++D I L
Sbjct: 1   MIALLAGKLAHKSPDFIILDIGGVGYRVQIPFSTYYALPDAGGVVTLNIYTHVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL SV GVG ++  G+LS I A  L +++I  +   ++ IPGI  K 
Sbjct: 61  YGFRTMAEKEMFQLLISVSGVGPKLGNGILSNIEAENLSDALIRGDLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ EL+ K   +    +++D       Q           + ISALVNLGY +
Sbjct: 121 AERLVLELREKVKKMGPFSIREDAPPSPGRQ-------DIRDDVISALVNLGYKE 168


>gi|303230216|ref|ZP_07316984.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515142|gb|EFL57116.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 202

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + ++ +  +  + + +      S PS    AI ALV+LGY Q      
Sbjct: 120 AERLVLELKDKLVKMTQISVETPAAI-QPIGVTHSGPSG--EAIEALVSLGYAQKDVEAL 176

Query: 181 VVSVLKKEKNIA 192
           V S+    K+++
Sbjct: 177 VESLNDGSKDVS 188


>gi|332826883|gb|EGJ99683.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 193

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 106/204 (51%), Gaps = 14/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L    V ++  GV Y I   + T S L GK      LF+   +R+D  +
Sbjct: 1   MIDYIKGEITELTPASVTLETYGVGYFISISLNTYSNLTGK--KSAQLFIYEAIREDAHQ 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    +R+ FMLL SV G+GA     +LS +   EL   I   NS ++  + GI +K
Sbjct: 59  LFGFFDKQERELFMLLISVSGIGASTGRMILSSMNTQELANVIASGNSDMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ +LK K I +S + Q DM             PS    A++ALV LG+ Q QA+ 
Sbjct: 119 TAQRVIVDLKDK-IKVSGIEQVDMFA--------SGHPS-GEEAVAALVMLGFTQ-QASQ 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            VV+ + K+K  +   QII+ AL+
Sbjct: 168 KVVAKILKDKADSTVEQIIKTALK 191


>gi|260587811|ref|ZP_05853724.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583]
 gi|331083813|ref|ZP_08332922.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542076|gb|EEX22645.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583]
 gi|330403238|gb|EGG82798.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 203

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 1/181 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I  + ED V+++   + Y ++ P+  +  + + GD   ++   ++R+D ++L
Sbjct: 1   MIAYLKGEIVEILEDRVILEAGNIGYNLFMPMAGVDGVLRTGDETKIYTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F LL  V G+G + A+GVLS ++A EL  +++  + K I++ PGI  K 
Sbjct: 61  YGFLTKDDLNVFKLLLGVNGIGPKAALGVLSGLSADELRFAVLADDVKTISKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K +SL          V +    +  +      A+ AL  LGY    A  A
Sbjct: 121 AQKLILELKDK-MSLQEAFDLKSEHVQESAGSLSDVSDIKKEAVEALTALGYSGADALRA 179

Query: 181 V 181
           V
Sbjct: 180 V 180


>gi|333029161|ref|ZP_08457222.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           coprosuis DSM 18011]
 gi|332739758|gb|EGJ70240.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           coprosuis DSM 18011]
          Length = 199

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 113/204 (55%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  +KG +  L     ++D  GV Y +   + T S L GK    C L+++  +R+D  +
Sbjct: 1   MIEYVKGELAELTPAQAVVDCNGVGYGVSISLNTYSALQGK--KECKLYIQEVIREDAHQ 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF++  +R+ F+LL SV G+G   A  +LS ++  ELVE+I  +N+K++  + GI  K
Sbjct: 59  LFGFINKEERELFLLLNSVSGIGGNTARMILSALSPVELVEAIGTENTKLLQSVKGIGKK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LK K I  +++V+     V   ++ +  M  +   +ISAL  LG+       
Sbjct: 119 TAERIIVDLKDK-IKSTAIVENGHVTVG--ESTLSDMDIYN-ESISALTMLGFAPAPTRK 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V ++ K+  N   + ++++LAL+
Sbjct: 175 VVHAIFKENPNHTIE-EVVKLALK 197


>gi|83950117|ref|ZP_00958850.1| Holliday junction DNA helicase motor protein [Roseovarius
           nubinhibens ISM]
 gi|83838016|gb|EAP77312.1| Holliday junction DNA helicase motor protein [Roseovarius
           nubinhibens ISM]
          Length = 216

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 74/119 (62%)

Query: 14  EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           ED+VL+DV+GV Y++YC  RTL  L  +G+   L+ +  +R+D ++LFGF S ++++W  
Sbjct: 6   EDHVLLDVRGVGYLVYCSDRTLQALPPVGEHTALYTDLLVREDLLQLFGFTSLVEKEWHR 65

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
           LL  VQG+GA+ ++ +L  +    +  +I L +   +    G+  K A R++ ELK KA
Sbjct: 66  LLMGVQGIGAKASLAILGTLGVEGVSRAINLGDWNALKAAKGVGPKTAQRVVNELKDKA 124


>gi|291538854|emb|CBL11965.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis
           XB6B4]
          Length = 203

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 112/207 (54%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  + E+ ++++  G+ Y IY   +T   L  +G+   ++   H+R+D + L
Sbjct: 1   MYSYIKGILTDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  + + + LL  V G+G + A+ +LS +T  +L  +++  ++K IA+ PG+  K 
Sbjct: 61  FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELK K +SL    +Q      +  + H     +    A+ ALV LGY   +A  
Sbjct: 121 AQRLILELKDK-LSLEDAFEQKFEKTGESTENHASGTKN---EAVQALVALGYSSSEALR 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  +   E+   D  +I+++AL+ ++
Sbjct: 177 ALNGIEITEET--DVEEILKMALKKMA 201


>gi|82703833|ref|YP_413399.1| Holliday junction DNA helicase RuvA [Nitrosospira multiformis ATCC
           25196]
 gi|123740585|sp|Q2Y5G4|RUVA_NITMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|82411898|gb|ABB76007.1| Holliday junction DNA helicase subunit RuvA [Nitrosospira
           multiformis ATCC 25196]
          Length = 197

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 14/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   VL+DVQGV Y I  P+ T   L  +G   TL     +R+D   L
Sbjct: 1   MIGRISGLLLEKFPPLVLVDVQGVGYEIDVPMSTFYNLPAVGTQITLHTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L  + GVGAR A+ +LS ++  +L +++  Q+   + +IPGI  K 
Sbjct: 61  FGFATEGERQAFRQLVKISGVGARTALALLSGLSVADLHQTVSNQDPARLIRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A R++ EL+ K          D+       A     PS    + ++AL++LGY   +A  
Sbjct: 121 AERLLLELRDKL---------DLGVSAIPGAAGARRPSTMGSDVLNALLSLGYNDREANW 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A VS L  + +++D    IR AL+ +S
Sbjct: 172 A-VSQLSVDLSVSDG---IRQALKFLS 194


>gi|319943009|ref|ZP_08017292.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia
           mirabilis ATCC 51599]
 gi|319743551|gb|EFV95955.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia
           mirabilis ATCC 51599]
          Length = 195

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y I  P+ TL  L   G   TL+    +R+D   L
Sbjct: 1   MIGRIHGTLVLANPPEILVDAHGVGYEISVPMSTLYELPPPGQTVTLWTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F  +  V G+G R+A+ VLS ++  +L  ++  Q +  + ++PG+  K 
Sbjct: 61  YGFLTESERTAFRAMIRVSGIGPRMALAVLSGLSVDDLSRAVAEQETGRLTRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK    SS +Q     +N +QA   S      + + AL+ LGY + ++  A
Sbjct: 121 AERLLLELKGKLALASSGIQ-----IN-DQALFSS----GDDILRALLALGYSEKESNAA 170

Query: 181 VVSVLKKEKNIADD-SQIIRLALRA 204
           +   L +  N+ D   Q ++L +RA
Sbjct: 171 IAK-LPEGVNVNDGIRQALKLLVRA 194


>gi|307245098|ref|ZP_07527191.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254053|ref|ZP_07535900.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258509|ref|ZP_07540246.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853987|gb|EFM86199.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862978|gb|EFM94925.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867413|gb|EFM99264.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 201

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A R++ ELKGK      V Q D    +  +  + +     A  A  ALV LGY    A  
Sbjct: 121 AERLLVELKGK---FKGVAQSDFFEEHSVETIVATHSHDPADEARDALVALGYKLADAEK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V    K  A   Q+IR AL+A
Sbjct: 178 MIKKV---NKAGATSEQLIREALKA 199


>gi|317496792|ref|ZP_07955122.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895804|gb|EFV17956.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 201

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +E +    V++D  G+ Y +  P+R  S   KIG    ++   H+R+D + L
Sbjct: 1   MISYIKGILEDMSPGMVVVDNHGIGYQMMVPMRGES-FPKIGQEIKIYTHMHVREDDVSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  +++ F LL  V G+G +V + VLS ++  EL  ++I ++ K I++ PG+  K 
Sbjct: 60  FGFLSKEEKEAFELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A +++ ELK K     S  + +   V  E     +  S ++   I  LV+LGY + +A  
Sbjct: 120 AKKLILELKDKL----SFEELEEDGVGAEIFDTSADSSDSVMITIEGLVSLGYSKSEAAI 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V +  K++  + ++++ AL+ I
Sbjct: 176 AVNKV-EDAKDLTPE-ELLKKALKNI 199


>gi|156741100|ref|YP_001431229.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM
           13941]
 gi|189045765|sp|A7NIB1|RUVA_ROSCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|156232428|gb|ABU57211.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM
           13941]
          Length = 197

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 19/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  G+ ++IY P + L+  G IG    LF    +R+D + L
Sbjct: 1   MIASVRGTLIAVAADHVVIETGGIGWMIYAPRQVLAAPGDIGAEMRLFTCLIVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   RQ F  L SV GVG + A+ +LS  T  EL  +I   +   +A+ P I  K+
Sbjct: 61  YGFKTVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVARLARTPRIGKKL 120

Query: 121 ASRIMTELKG----KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ELKG    K + ++  V   ++ VN E + +             LV+LG+   +
Sbjct: 121 AERLVLELKGKLDIKGLPVAPGVSPAVAAVNAELSEM-------------LVSLGFSSAE 167

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           A+TA ++ L  +  + D  + +RLALR
Sbjct: 168 ASTA-IAALPPDAPL-DLEERLRLALR 192


>gi|118444147|ref|YP_877905.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT]
 gi|118134603|gb|ABK61647.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT]
          Length = 215

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 112/204 (54%), Gaps = 17/204 (8%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG   GL +DY++++   + Y IY    T++ +  I +   +++E  +R+D I L+GFL
Sbjct: 20  IKGTYMGLNKDYIIVESNNIGYKIYTSGNTMAGMPNINEKVKIYIEQIVREDFIGLYGFL 79

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            + +R  F LL ++ GVGA+ A+ +LS    + L  +I+ ++ K++ + PGI  KIA RI
Sbjct: 80  REDERAMFNLLLTISGVGAKAALSLLSISNVSSLKVAIMTEDYKMLTRAPGIGKKIAQRI 139

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVV 182
             ELK K   +  +  +D+   + E     SM +      AI ALV LG+ Q +A  A+ 
Sbjct: 140 TLELKDK---IEKIYAEDIE--DGENISKLSMDTGRKYDEAIEALVALGFTQKEAEKAL- 193

Query: 183 SVLKKEKNIADDS---QIIRLALR 203
                 KNI  ++   QII+ +LR
Sbjct: 194 ------KNIDINNTIEQIIKDSLR 211


>gi|298370450|ref|ZP_06981766.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281910|gb|EFI23399.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 193

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 14/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +        +IDV GV Y +   ++T   L   G+   L+ +  +R+D   L
Sbjct: 1   MIGRLKGILVEKNPPQAVIDVNGVGYEVDVSMQTFYRLPATGEAVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS ++A EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +          S V+   A + +      + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLV----------SAVSDGPAALSAAADGTDDIVSTLLALGYSEREAKAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  + K      D  + +RLAL+
Sbjct: 171 VKGLPKG----TDVGEGVRLALK 189


>gi|225181939|ref|ZP_03735373.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT
           1]
 gi|225167379|gb|EEG76196.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT
           1]
          Length = 200

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 99/184 (53%), Gaps = 6/184 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +    +D V++D QG+ + I  P   LS L  + +   LF    +R+D + L
Sbjct: 1   MFNYIRGTLVQKGKDTVVLDNQGIGWQISVPSTVLSGLHSLDEEVKLFTYLAVREDDLHL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F LL SV G+G + A+G+LS ++A E   +++ +N K + ++PG+  K 
Sbjct: 61  YGFLTADDLSLFKLLISVSGIGPKAALGILSSLSAAEFHLAVMHENVKALTRVPGVGPKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  +L +   Q +S   +      +      +A+ ALV LGY   +A  A
Sbjct: 121 AKRLIVELKEKVAALGT--PQTVSATPQAGGTTSAYH----DALEALVALGYNGSEAQAA 174

Query: 181 VVSV 184
           + ++
Sbjct: 175 LQTI 178


>gi|24373977|ref|NP_718020.1| Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1]
 gi|38372487|sp|Q8EEF2|RUVA_SHEON RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24348428|gb|AAN55464.1|AE015684_1 Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1]
          Length = 205

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLIDV GV Y +  P+ +   L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPELNQPTTVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +    +    + S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPVVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+     D   +I+ AL+++
Sbjct: 181 KAVSAAFKEG---MDSETLIKAALKSM 204


>gi|16272267|ref|NP_438479.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae Rd
           KW20]
 gi|260581219|ref|ZP_05849038.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW]
 gi|1173330|sp|P44632|RUVA_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|1573280|gb|AAC21976.1| Holliday junction DNA helicase (ruvA) [Haemophilus influenzae Rd
           KW20]
 gi|260092144|gb|EEW76088.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW]
          Length = 204

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 16/210 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173
           A R++ ELKGK      V Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALR 203
             +A   V  V K E       Q+IR AL+
Sbjct: 175 PVEAEKMVKRVAKPE---LTSEQVIREALK 201


>gi|326791465|ref|YP_004309286.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM
           5427]
 gi|326542229|gb|ADZ84088.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM
           5427]
          Length = 197

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 108/202 (53%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E + E+ ++I+V GV Y ++C  RTLS L    +   +++  H+++D   L
Sbjct: 1   MITYLVGTLEHIGENTLVIEVYGVGYEVFCSSRTLSELNGTREKVKIYIHEHIKEDGHDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    DR+ F  L SV G+G +  M V +  ++ E++E I+ Q+SK ++++ GI  K 
Sbjct: 61  YGFYHMEDRELFRKLISVSGIGPKGGMQVFNTYSSQEVIEIILNQDSKALSKVSGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK    S+  +   D+S +           S    AI AL  LGY   +A  A
Sbjct: 121 AQRIILELKD---SIGKLFVPDLSLLETG----LKDESAKAEAIEALEALGYAAQEARKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V ++   +   A+  ++I+ AL
Sbjct: 174 VEAIYDYK---ANSEELIKKAL 192


>gi|237654483|ref|YP_002890797.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T]
 gi|237625730|gb|ACR02420.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T]
          Length = 200

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 20/212 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y I  P+ T   L   G   +L     +R+D   L
Sbjct: 1   MIGRITGTLLEKNPPQILVDAHGVGYEIDVPMSTFYNLPATGGTVSLHTHFVVREDGHFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  V GVGAR+A+ VLS ++  +L +++ LQ +  + +IPGI  K 
Sbjct: 61  FGFATEEERATFRQLLKVSGVGARMALAVLSGLSVNDLAQAVALQEAGRLVKIPGIGKKT 120

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ EL+   GKA+         M+      A   + P    + ++AL+ LGY + +A
Sbjct: 121 AERLLLELRDKLGKALP-------SMTGARLAAAAPGAAPDAKSDILNALLALGYNEREA 173

Query: 178 TTAVVSVLKKEKNIADD---SQIIRLALRAIS 206
            +A+       K +A+D   S  IR AL+A+S
Sbjct: 174 LSAM-------KGLAEDVGVSDGIRQALKALS 198


>gi|172040615|ref|YP_001800329.1| Holliday junction DNA helicase RuvA [Corynebacterium urealyticum
           DSM 7109]
 gi|229560025|sp|B1VDJ7|RUVA_CORU7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171851919|emb|CAQ04895.1| ruvA [Corynebacterium urealyticum DSM 7109]
          Length = 206

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 16/212 (7%)

Query: 1   MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           MI  ++G++  +GL  DYV+I+  GV Y       TL+ L + G+   +     +R D  
Sbjct: 1   MISSLRGDVIDKGL--DYVVIECGGVGYRCLATGDTLATL-RRGESAFVLTSLVIRDDAH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+ F +   R+ F +LQ V GVGAR+AMGV+S +   ++  ++   + K + Q PG+  
Sbjct: 58  TLYAFSTSEQRETFGILQKVSGVGARLAMGVMSVLQPADIARAVEEGDIKTLQQAPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           ++A R+  +LKGK  +L +   Q    D++    + A            + ALV LG+ +
Sbjct: 118 RLAERMAVDLKGKFPALEATSGQATIGDIAATGNDTA-------LQSQVVEALVGLGFTE 170

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +A TAV  +L+++    D S ++R AL+ +S
Sbjct: 171 AKAATAVKKILEEQNGTTDPSSVLREALQRLS 202


>gi|167856020|ref|ZP_02478765.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus
           parasuis 29755]
 gi|167852859|gb|EDS24128.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus
           parasuis 29755]
          Length = 202

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 113/205 (55%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +++DVQGV Y +  P+ +   L  + +   +F    +R+D   L
Sbjct: 1   MIGRLCGRIIEKSPPSMVLDVQGVGYEVLMPMTSFYNLPDLNEDTMIFTHLVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R  F  L    GVG ++A+ +LS ++ +E + +I  +    + +IPGI  K 
Sbjct: 61  FGFVQKQERMLFRELIKTNGVGPKLALAILSAMSVSEFMSAIEQEELAKLIKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-IN-AISALVNLGYGQDQAT 178
           A R++ ELKGK    S++   ++S + +   ++ SM S + +N AI AL++LGY    A 
Sbjct: 121 AERLLVELKGK---FSTLFHHEISIL-QPSGNLLSMESMSPVNEAIDALISLGYKAADAE 176

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
             V  V +K ++ ++  Q+IR AL+
Sbjct: 177 KMVKKVNRKSESTSE--QLIREALK 199


>gi|94264074|ref|ZP_01287873.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta
           proteobacterium MLMS-1]
 gi|93455490|gb|EAT05680.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta
           proteobacterium MLMS-1]
          Length = 212

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 115/213 (53%), Gaps = 8/213 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D ++++V GV Y ++ P      L   G+   L+++T +R+D   L
Sbjct: 1   MIATLRGQLTQKGADSLIVEVGGVGYEVFFPAGRQDRLPPRGEELFLYIQTVVREDSFCL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++Q+F+LL  V GVG R+AM +L+      L  +I   +   + ++PG+  K 
Sbjct: 61  YGFVDAAEKQFFLLLLGVSGVGPRLAMNILAAAAPDVLGRAIATDDIAGLKKLPGVGKKT 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R+  ELK K     +   + + D +   ++ A   + P F  +A SAL+NLGY   +A
Sbjct: 121 AERLCLELKDKVDFFPAAKPLARPDQAPPAEQGADFGAQPVFQ-DAYSALLNLGYPPVRA 179

Query: 178 TTAVVSVLKK-EKNIADD---SQIIRLALRAIS 206
            +A+  V ++ E+  A +    +++R+ LR+++
Sbjct: 180 RSALEEVRRQLEQEPAGELPLPELLRITLRSLA 212


>gi|46143844|ref|ZP_00133975.2| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207771|ref|YP_001052996.1| Holliday junction DNA helicase RuvA [Actinobacillus
           pleuropneumoniae L20]
 gi|303252521|ref|ZP_07338684.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247270|ref|ZP_07529319.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249498|ref|ZP_07531486.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307256311|ref|ZP_07538094.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260744|ref|ZP_07542433.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166229626|sp|A3MZ05|RUVA_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126096563|gb|ABN73391.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302648489|gb|EFL78682.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856243|gb|EFM88397.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858491|gb|EFM90559.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306865137|gb|EFM97037.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869583|gb|EFN01371.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 201

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK      V Q D    +  +  + +     A  A  ALV LGY    A  
Sbjct: 121 AERLLVELKGK---FKGVAQSDFFEEHSVETIVATHSHDPADEARDALVALGYKLADAEK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V    K  A   Q+IR AL+A
Sbjct: 178 MIKKV---NKAGATSEQLIREALKA 199


>gi|310643559|ref|YP_003948317.1| holliday junction ATP-dependent DNA helicase ruva [Paenibacillus
           polymyxa SC2]
 gi|309248509|gb|ADO58076.1| Holliday junction ATP-dependent DNA helicase ruvA [Paenibacillus
           polymyxa SC2]
          Length = 204

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 5/198 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++  L  +YV++DVQGV Y ++CP        K      ++   H+R+D I L
Sbjct: 1   MIDFLRGSVAHLENEYVVLDVQGVGYRVFCP--NPYAFAKTEGPVVIYTHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++Q F  L  V G+G RVA+G+L   T   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFATREEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   + ++     + +  E A      S+   A  AL  LGY  D     
Sbjct: 119 AQRMILDLKDKLDGIGALGM--ATGLFAEPAVEEGQGSYWSEAREALKALGY-TDAELDK 175

Query: 181 VVSVLKKEKNIADDSQII 198
           V S +KK+    D + I+
Sbjct: 176 VWSKMKKDAKPDDSADIL 193


>gi|169831522|ref|YP_001717504.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|229560028|sp|B1I477|RUVA_DESAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169638366|gb|ACA59872.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 202

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  +Y + V+++V G+ Y +  P    + L + G+   L+    +++  + +
Sbjct: 1   MIDFLKGRLVSVYPEAVVVEVGGIGYRVQVPPSLAASLPEPGETVFLYTYLSVKETALEM 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+LDR  F+LL  V G+G R A+ V+ R+    L  +I+ +++ ++  +PGI +K 
Sbjct: 61  FGFSSELDRTAFLLLLGVAGIGPRTALAVVGRLGTRRLWAAILREDTGILTTVPGIGVKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----INAISALVNLGYGQDQ 176
           A RIM EL+ +       +++    V+ E      +P  A      A++AL++LGY   +
Sbjct: 121 ARRIMVELRDR-------LEKQQVAVSAELPASDGVPVLAGRAENEALAALISLGYTPRE 173

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           A  A+  +  ++    D + ++  ALR
Sbjct: 174 AREALNRLPDRK---LDAAGLVHAALR 197


>gi|114776334|ref|ZP_01451379.1| putative Holliday junction DNA helicase RuvA [Mariprofundus
           ferrooxydans PV-1]
 gi|114553164|gb|EAU55562.1| putative Holliday junction DNA helicase RuvA [Mariprofundus
           ferrooxydans PV-1]
          Length = 188

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 20/207 (9%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G +  L     VL+   G+ Y +   ++TL C  ++G+   L + T++R+DQI 
Sbjct: 1   MIGWLSGTVRALDPAGSVLLVTGGIGYDVSVSVQTL-CKLRLGEAAELSIHTYVREDQIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +R+ F  L SV G+GAR+A+ ++  ++  EL+ +I   +   IA+ PGI  K
Sbjct: 60  LFGFANSNEREIFRKLTSVSGIGARMALNLMGGMSIEELIGAIEHADDLAIARTPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ EL+GK   L SV  +  + ++ +   +           SAL NLGY   Q   
Sbjct: 120 TAQRLILELQGK---LGSVAAEGGAAISNKADEVR----------SALTNLGYKPAQIDL 166

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+     K    AD   + R AL+A+S
Sbjct: 167 AL-----KHVEPADFESMFRAALKAMS 188


>gi|254449000|ref|ZP_05062454.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           HTCC5015]
 gi|198261394|gb|EDY85685.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           HTCC5015]
          Length = 205

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 112/210 (53%), Gaps = 17/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +      ++L+DV GV Y +  P+ T+  L   G    + + TH+R+D I+L
Sbjct: 1   MIGRLSGTLISKQAPHLLVDVNGVGYEVEAPLSTVFELPAEGQAVVVLIHTHVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F +D++R++F  L  + GVGA++A+ ++S  +A    + +  +++  + ++PG+  K 
Sbjct: 61  FAFGTDIERRFFRSLIKINGVGAKMALAIMSGASAETFAQWVDQEDTAALTKLPGVGKKT 120

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQ 176
           A R++ E++    K + + +V     + V+       S P S    A++AL  LGY   +
Sbjct: 121 AERLVIEMRDRLDKEVFMGAVPSLPKAGVSA----TASAPMSREDEAVAALEGLGYRAAE 176

Query: 177 ATTAVVSVLKKEKNIADD---SQIIRLALR 203
           A   V  V +      DD    ++IRLAL+
Sbjct: 177 ARKMVAKVAQ------DDLPTEEMIRLALQ 200


>gi|293390518|ref|ZP_06634852.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951052|gb|EFE01171.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 204

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQG+ Y +  P+ +   L ++G    LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTRLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELKGK   + +    VQ D   + +    I +    +  A++ALV LGY    A
Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQAD--HLPRFSTEISATVEPSNEAVAALVALGYKPLDA 178

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
              V  V K E       QIIR AL+A
Sbjct: 179 EKMVKKVSKPE---LSSEQIIREALKA 202


>gi|307266570|ref|ZP_07548102.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918424|gb|EFN48666.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 187

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 15/184 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE + +DYV+ID  G+   ++ P  TL  L   G+   L+   HMR+D +++
Sbjct: 1   MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGLQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS ++    V+++ + + K +   PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K +    V++ D               +F+  A+ AL+ LGY + +A  A
Sbjct: 121 AERIILELKDK-LPKKIVLEGD--------------NNFSNEALEALLALGYTKSEAIYA 165

Query: 181 VVSV 184
           +  +
Sbjct: 166 LADI 169


>gi|42520918|ref|NP_966833.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99035955|ref|ZP_01315000.1| hypothetical protein Wendoof_01000161 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|81652227|sp|Q73G51|RUVA_WOLPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|42410659|gb|AAS14767.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 190

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 113/208 (54%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MIG + G ++ +  D+++++V  V Y++Y   +TL+    IG    L +ET+   R++  
Sbjct: 1   MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLNACS-IGSRVKLLIETYANNRENVA 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF+S  ++Q   LL  V GV  + AM +L ++T  +L  + I+   KV  ++ G+ +
Sbjct: 60  QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILGKLTPEQLFLA-IMNEDKVALKMSGLGL 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L          +N    H  +      +A+SAL+NLGY + +A 
Sbjct: 119 KLINRIITELSGKVSKLE---------INNNNFHPINE-----DALSALINLGYEKMKAY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +    KK +   D   IIR+AL+ +S
Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELS 188


>gi|269123417|ref|YP_003305994.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis
           DSM 12112]
 gi|268314743|gb|ACZ01117.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis
           DSM 12112]
          Length = 200

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 18/196 (9%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID+ GV Y IY  I+T   L  IG+   L++ T +++D I  FGF ++L+R  F+ 
Sbjct: 15  NYVVIDINGVGYKIYTSIKTYDKLNSIGEKERLYIHTIVKEDDISFFGFKNELERSIFLE 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE----LKG 130
             ++ G+GA+ A+ +LS     EL      +N K +A++PGI MK A +IM +    L+G
Sbjct: 75  CIAINGIGAKKAIAILSNFEFEELAAIASSKNFKELAKVPGIGMKKAEKIMVDLSDKLEG 134

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190
             I+ SS  Q  +   NK++           N   AL +LGY +      +     KE N
Sbjct: 135 LKITNSSSSQDIVELYNKKE-----------NLRLALESLGYEKVNINNIIEDKYIKELN 183

Query: 191 IADDSQIIRLALRAIS 206
           +    ++I++AL  I+
Sbjct: 184 M---QELIKMALLNIN 196


>gi|296313720|ref|ZP_06863661.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC
           43768]
 gi|296839643|gb|EFH23581.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC
           43768]
          Length = 194

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +  +  V   +     E      +       +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLV--AHTVTDGLFAAPSENDETNDI-------VSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V K      D  + +RLAL+
Sbjct: 172 VKGVPKG----TDVGEGVRLALK 190


>gi|126668399|ref|ZP_01739356.1| Holliday junction DNA helicase motor protein [Marinobacter sp.
           ELB17]
 gi|126627108|gb|EAZ97748.1| Holliday junction DNA helicase motor protein [Marinobacter sp.
           ELB17]
          Length = 209

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 18/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        +++ QG+ Y +  P+ T   L   G   TL     +R+D   L
Sbjct: 1   MIGRIRGILLEKKPAQAMVECQGLGYEVDIPLSTFLNLPDPGQELTLHTHFVVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S LDR  F LL  V GVG ++A+G+LS ++A++ + S+  +++  + ++PG+  K 
Sbjct: 61  FGFSSRLDRDLFRLLIKVNGVGPKLAVGILSGLSASQFIRSVQARDTSALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+  +   L    Q +++  +   A + +    A N     A +AL+ LGY   
Sbjct: 121 AERLLIEMTDRIGQLEG--QFELTAASAPGATLPANGMPAANDPREEAEAALIALGYKPQ 178

Query: 176 QATTAVVSVLKKEKNIADD----SQIIRLALR 203
           +A  A+         IA+D     Q+IR+ALR
Sbjct: 179 EAAKAI-------SRIAEDGMTNEQLIRMALR 203


>gi|85712318|ref|ZP_01043369.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           baltica OS145]
 gi|85693945|gb|EAQ31892.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           baltica OS145]
          Length = 206

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VL+DVQGV Y I  P+     L   G+  TL     +R+D   L
Sbjct: 1   MIGQIRGTLVSKQPPEVLVDVQGVGYEIQLPMTCFYQLPATGEPVTLVTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F LL   QGVG ++A+ +LS + A E V ++   +   + ++PG+  K 
Sbjct: 61  YGFNSLAERSLFRLLIKTQGVGPKLALAILSGMNADEFVWAVNQNDVSRLVKLPGVGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQA 177
           A R++ E++   K    SS    D + ++         P+ A N A+SAL+ LGY   QA
Sbjct: 121 AERLVIEMRDRLKDWQGSSTPATDAAPLDNVSGDALVHPADARNDALSALLALGYKPVQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ +V ++ ++      +IR AL+ +S
Sbjct: 181 EKALKAVYQQGES---SETLIRSALKQLS 206


>gi|30248236|ref|NP_840306.1| Holliday junction DNA helicase subunit [Nitrosomonas europaea ATCC
           19718]
 gi|44888448|sp|Q820S3|RUVA_NITEU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|30180121|emb|CAD84123.1| probable Holliday junction DNA helicase subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 195

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 16/184 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   VL+DV G+ Y I  P+ T   L  IG+  TL     +R+D   L
Sbjct: 1   MIGRIAGLLLEKHPPLVLVDVNGIGYEIDVPMSTFCRLPGIGEQVTLHTHFWVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+++ +R  F  L  + G+GAR  + +LS ++  +L + ++ Q+S  + +IPGI  K 
Sbjct: 61  FGFMTEPERVLFRQLTKISGIGARTGLAILSGLSVNDLHQIVVSQDSTRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGK---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ EL+ K   AI+L        S  +K+           +NA+SA   LGY   +A
Sbjct: 121 AERLLLELRDKISPAITLPETGTAMASSTDKD----------ILNALSA---LGYNDREA 167

Query: 178 TTAV 181
             AV
Sbjct: 168 NWAV 171


>gi|309972527|gb|ADO95728.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus
           influenzae R2846]
          Length = 204

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173
           A R++ ELKGK      V Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A   V  V    K      Q+IR AL+A
Sbjct: 175 PVEAEKMVKRV---AKPALTSEQVIREALKA 202


>gi|313894615|ref|ZP_07828178.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313440805|gb|EFR59234.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 202

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 112/202 (55%), Gaps = 7/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +   Q    +       AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKLAKMTHISTESSAVI---QPIGVTASGATGEAIEALVSLGYSERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V S+   ++++   S++I+++L
Sbjct: 177 VESLDDGKRDV---SELIKVSL 195


>gi|240144037|ref|ZP_04742638.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82]
 gi|257203963|gb|EEV02248.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82]
 gi|291536276|emb|CBL09388.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis
           M50/1]
          Length = 203

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 112/207 (54%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  + E+ ++++  G+ Y IY   +T   L  +G+   ++   H+R+D + L
Sbjct: 1   MYSYIKGILRDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  + + + LL  V G+G + A+ +LS +T  +L  +++  ++K IA+ PG+  K 
Sbjct: 61  FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELK K +SL    +Q      +  + H     +    A+ ALV LGY   +A  
Sbjct: 121 AQRLILELKDK-MSLEDAFEQKFEKTGEPAENHAQGTKN---EAVQALVALGYSSSEALR 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  +   E+   D  +I+++AL+ ++
Sbjct: 177 ALNGIEITEET--DVEEILKMALKNMA 201


>gi|153855299|ref|ZP_01996465.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814]
 gi|149752298|gb|EDM62229.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814]
          Length = 204

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +EG+ ED V++DV GV Y IY     +  L  +G    +    H+++D ++L
Sbjct: 1   MITYIRGILEGMEEDKVIVDVGGVGYGIYMAGTAMGRLPALGKEVKIHTHLHVKEDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F LL  V G+G +  +G+LS +   +L  ++   + K I   PGI  K 
Sbjct: 61  YGFLTRDELRVFRLLIGVSGIGPKGGLGILSALGPDDLRFAVASNDVKAIQAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A +++ ELK K + L   ++   + V         M +     A+ ALV LGYG  +A  
Sbjct: 121 AEKLILELKDK-LKLEDALENAANAVQNTADTSAGMANEMTGEAVQALVALGYGNTEALK 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  V   E+   +D  ++R +L+
Sbjct: 180 AVRQVEITEEMSVED--VLRQSLK 201


>gi|302386617|ref|YP_003822439.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum
           WM1]
 gi|302197245|gb|ADL04816.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum
           WM1]
          Length = 202

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 4/194 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  ++ED V+I+   V + I+ P+  L  L  IG    L+    +R+D + L
Sbjct: 1   MISFIKGPLAEIFEDTVVIESGNVGFEIHAPLSVLEKLPGIGVEIKLYTYFQVREDAMCL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D Q F  L SV G+G + A+G+LS +   EL  +II  ++K I++ PG+  K 
Sbjct: 61  FGFLNRQDLQMFQQLISVNGIGPKGALGILSALRPEELRRAIISGDAKAISKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K I L+ ++    S   +    +         A+ AL  LGY   +A  A
Sbjct: 121 AQRIILDLKDK-IDLAEILP---SGFTESADKVILSGGVTEEALEALTALGYSAAEAGRA 176

Query: 181 VVSVLKKEKNIADD 194
           V  V   E    +D
Sbjct: 177 VRQVEVTESMTVED 190


>gi|188591242|ref|YP_001795842.1| holliday junction DNA helicase ruva [Cupriavidus taiwanensis LMG
           19424]
 gi|229560026|sp|B2AH73|RUVA_CUPTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170938136|emb|CAP63122.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Cupriavidus taiwanensis LMG 19424]
          Length = 193

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L  +G   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + G+GAR+A+ VLS ++  EL ++I LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177
           A R++               +    +  E  H    P+    A++ ++AL+ LGY + +A
Sbjct: 121 AERLLL--------------ELKGKLGAELGHAPGTPAVPDSAVDVLNALLALGYSEKEA 166

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+    K+       S+ I+LAL+A+S
Sbjct: 167 AAAI----KQVPAGTGVSEGIKLALKALS 191


>gi|57239403|ref|YP_180539.1| Holliday junction DNA helicase RuvA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579373|ref|YP_197585.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|81352832|sp|Q5HAK5|RUVA_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57161482|emb|CAH58408.1| putative Holliday junction DNA helicase RuvA [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417999|emb|CAI27203.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 191

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 122/208 (58%), Gaps = 20/208 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58
           MIG I GN+E + + Y++++V  + YIIY   + L +C  K+GD   L++ET++ +D I 
Sbjct: 1   MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQTC--KVGDNIKLYIETYVNRDNIT 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GFL+  ++ +  +L ++ G+  + A+ +LS+++  E + S ++ N K+  +  GI  
Sbjct: 59  QLYGFLNRQEQDYLKMLVTINGINYKTALSILSKLSP-EQIFSAVVNNDKIAFKGNGIGE 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+A RI+TEL+ K   +   +++  S +  +            ++++AL++LGY + +A 
Sbjct: 118 KLAGRIITELQYKINKMP--IEETFSIIEND------------DSLAALISLGYEKLKAF 163

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             V+  +K +   A   ++IR AL+ +S
Sbjct: 164 N-VIQEIKSKTPDASTQEVIRKALQKLS 190


>gi|114330310|ref|YP_746532.1| Holliday junction DNA helicase RuvA [Nitrosomonas eutropha C91]
 gi|122314644|sp|Q0AJA4|RUVA_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114307324|gb|ABI58567.1| Holliday junction DNA helicase subunit RuvA [Nitrosomonas eutropha
           C91]
          Length = 194

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 11/181 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   VL+DVQG  Y I  P+ T   L  IG   TL     +R+D   L
Sbjct: 1   MIGRITGLLLEKHPPLVLVDVQGTGYEIDVPMSTFCKLPDIGKKVTLHTHFWVREDVHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+++ +R  F  L  + G+GAR  + +LS ++ T+L ++++ Q+S  + +IPGI  K 
Sbjct: 61  FGFMTEQERALFRQLTKISGIGARTGLAILSGLSVTDLHQAVVSQDSIRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   ++ + +   +  N ++           + +SAL+ LGY   +   A
Sbjct: 121 AERLLLELRDKIDPVAILSEAGAAASNVDK-----------DILSALLALGYNGREVNRA 169

Query: 181 V 181
           +
Sbjct: 170 L 170


>gi|256425896|ref|YP_003126549.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM
           2588]
 gi|256040804|gb|ACU64348.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM
           2588]
          Length = 195

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V IDVQGV Y +   + T S + +  + C L    H+++D   L
Sbjct: 1   MIAYLNGKLSYKSPAMVHIDVQGVGYEVQISLNTYSRI-QGSESCKLLTYLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F+LL SV G+GA  A  +LS +   ++  +I ++N K++  I GI  K 
Sbjct: 60  YGFADDAERQMFLLLISVSGIGANTARMMLSSLQPEDIQRAIAMENEKMLESIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K        Q+D+      Q  +    +   +A++ALV LG  ++ A  A
Sbjct: 120 AKRVILELKDKVKK-----QKDIG----NQISVTPNNTIQEDALNALVTLGIARNVAEQA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK E  + D   +I+ +L+ +
Sbjct: 171 INKVLKAEPLLLDLEALIKKSLKGL 195


>gi|253699567|ref|YP_003020756.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21]
 gi|259495645|sp|C6E1S9|RUVA_GEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|251774417|gb|ACT16998.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21]
          Length = 199

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     +++++DV GV Y ++ P  T   L   G   +L + T +++D I L
Sbjct: 1   MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPAEGGALSLQIHTSVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL  V GVG ++A G+LS    +EL +S++  N   ++ IPGI  K 
Sbjct: 61  YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L     Q        +  I        + +SAL+NLGY +     A
Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGATAPAKQEIRD------DVLSALINLGYKE-----A 169

Query: 181 VVSVLKKEKNIADDSQI 197
           VV     E  + +D+ +
Sbjct: 170 VVQKALAELKVTEDATV 186


>gi|254281679|ref|ZP_04956647.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B]
 gi|219677882|gb|EED34231.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B]
          Length = 207

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +   +   +++DV GV Y I  P+ TL  L  IG   +L     +R+D  +L
Sbjct: 1   MIGRIRGILAAKHPPEIVVDVGGVGYEIQVPMTTLFQLPDIGTEVSLVTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S++DR+ F  L  V GVG R+A+ +LS + A E    +   +   +  +PG+  K 
Sbjct: 61  FGFVSEVDRRLFRELIKVSGVGPRLALTLLSGMDAREFSRCLQRDDVASLVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E++ KA      +  +M+        +   P  A +     A  ALV LGY   
Sbjct: 121 AERLLVEMRDKAGKWLGELSPEMATT------VGVAPGPAPDDAREEAEQALVALGYKLA 174

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
            A+  V SV   + + A   Q+IR AL+A
Sbjct: 175 DASRLVASV---DDSGASSEQLIRRALQA 200


>gi|261868502|ref|YP_003256424.1| Holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413834|gb|ACX83205.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 204

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQG+ Y +  P+ +   L ++G    LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTCLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELKGK   + +    VQ D   + +    I +    +  A++ALV LGY    A
Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQAD--HLPRFSTEISATVEPSNEAVAALVALGYKPLDA 178

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
              V  V K E       QIIR AL+A
Sbjct: 179 EKMVKKVSKPE---LSSEQIIREALKA 202


>gi|91785164|ref|YP_560370.1| Holliday junction DNA helicase motor protein [Burkholderia
           xenovorans LB400]
 gi|296157351|ref|ZP_06840187.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1]
 gi|123358465|sp|Q13UC1|RUVA_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91689118|gb|ABE32318.1| DNA recombination protein, RuvA [Burkholderia xenovorans LB400]
 gi|295892687|gb|EFG72469.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1]
          Length = 193

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK       +  D+  +        S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKGK-------IGADLGAMAG----AASASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           V       KN+      S+ I+LAL+A+S
Sbjct: 170 V-------KNVPAGTGVSEGIKLALKALS 191


>gi|326560238|gb|EGE10626.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 7169]
 gi|326566444|gb|EGE16594.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC1]
          Length = 204

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +  C   IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSF-CQLTIGTQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK      +       +  + A    +        SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPADNSML--IVAEVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|149196353|ref|ZP_01873408.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa
           HTCC2155]
 gi|149140614|gb|EDM29012.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa
           HTCC2155]
          Length = 206

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 110/215 (51%), Gaps = 17/215 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  L     +IDV GV Y +  P+ T   L K+G    L +   +R+D + L
Sbjct: 1   MIAHLKGQLVELELSNAVIDVGGVGYYVDIPMSTYDRLPKVGSPVALRIHMTVREDAMNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R +F ++ SV G+G ++A+  LS +      E+I   N K++++I G+  ++
Sbjct: 61  YGFATDEERSFFRMITSVSGIGPKIALAALSALPTETFCEAIQEGNIKLLSKISGVGKRM 120

Query: 121 ASRIMTELKGK--AISLSS-----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++ EL+ K  A+ ++S     V   DMS  +KE  +         ++I AL  LGY 
Sbjct: 121 AERMVVELRDKVGALGMTSAFVAKVADDDMSAQDKEAFN---------DSIMALEALGYR 171

Query: 174 QDQATTAVVSVLKKEKNIADDSQ-IIRLALRAISC 207
            D     V ++          S+ II+ AL A++ 
Sbjct: 172 PDTIRKTVKTIFDGLSPAQRSSENIIKAALSAMNS 206


>gi|311113689|ref|YP_003984911.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia
           dentocariosa ATCC 17931]
 gi|310945183|gb|ADP41477.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia
           dentocariosa ATCC 17931]
          Length = 206

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G++  +  +  ++DV G   ++    RTLS L + G   TL     +R+D + L
Sbjct: 1   MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TATE+  ++   + K   ++PGI  K 
Sbjct: 60  YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I     + +D +  N     I   P      + AL +LG+ +  A  A
Sbjct: 120 ARRIVLELAGKLI-----LSKDQAEENAPAQGIAWKPQV----MDALTSLGWSEKDADAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +  + N   + + +  ALR +
Sbjct: 171 IDAYV--QHNPDAEKEAVSAALRGV 193


>gi|225025938|ref|ZP_03715130.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353]
 gi|224956724|gb|EEG37933.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353]
          Length = 230

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 111/205 (54%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +I  IKG +    +D V+I+  G+ Y I  P R L  +   G+   L    ++R+DQ+ L
Sbjct: 27  LISYIKGTVAYKGKDSVVIENHGIGYQIKVPSRVLEGVNS-GEEAMLHTYLYVREDQLAL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F +L  + G+G + A+ VLS ++  +L  ++  +++K IA+ PGI  K 
Sbjct: 86  FGFSSIQELETFQILLGISGIGPKAALSVLSTMSVEDLYYAVFSEDAKSIAKTPGIGPKG 145

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K ++L ++     +     Q+      S A + + ALV LGY   +A  A
Sbjct: 146 AKRMIIELKDK-LNLEALESVSGAEEAAPQSSFTEGDSIA-DTVQALVALGYSNGEAYRA 203

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V SV + EK   D  Q+++ AL+ +
Sbjct: 204 VHSVPEAEK--LDAEQLLKEALKKV 226


>gi|160892584|ref|ZP_02073374.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50]
 gi|156865625|gb|EDO59056.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50]
          Length = 200

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +    E+Y++ID  G+ Y I+   + L  +   G    ++   ++R+D++ L
Sbjct: 1   MIAYIAGALVSAGENYIVIDNHGMGYRIFVSGKFLERIPAYGTQIKVYTHMYIREDELTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F +L  + GVG +VAM +L+ +T  EL  ++I +++K I++  G+  K 
Sbjct: 61  YGFHSEEELSVFRILIGISGVGPKVAMAILTALTIQELQLAVISEDAKTISKANGVGTKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ--AHICSMPSFAINAISALVNLGYGQDQAT 178
           ASRI+ ELK K      +  +DM     EQ  A      + A +AI ALVNLGY   +A 
Sbjct: 121 ASRIILELKDK------LKMEDMMDAAYEQSIAQNTQDVNAARDAILALVNLGYSNSEAA 174

Query: 179 TAVVSVLKKEKNIA--DDSQIIRLALRAI 205
            AV    KK  +I   D   I++ AL+ +
Sbjct: 175 LAV----KKIGDIGQMDTEAILKAALKKL 199


>gi|225572217|ref|ZP_03781081.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040279|gb|EEG50525.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM
           10507]
          Length = 201

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT---LFVET--HMRQ 55
           MI  +KG + G+ E  +L++  G+ Y I+ P+      G++    T   L V T  H+R+
Sbjct: 1   MIAFMKGTLAGIEETKILLEHDGIGYEIFIPMD-----GRVDRLYTGQELMVHTYLHVRE 55

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D ++L+GFL+  D + F LL  V GVG + A+G+LS I+A EL  +++ ++ K I++ PG
Sbjct: 56  DVLQLYGFLTRDDLEIFRLLLGVNGVGPKAALGILSAISADELRFAVLAEDIKTISKAPG 115

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I  K A +++ ELK K ++L    ++ +       A    +      A  AL  LGYG  
Sbjct: 116 IGRKTAQKLVLELKDK-LNLQDAFEKKLEHEYSSSAS-QEITDARQEAAEALTALGYGST 173

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
           QA  AV  V   EK   D   +++ AL+
Sbjct: 174 QALQAVRKVDGWEK--MDVETLLKAALK 199


>gi|326390112|ref|ZP_08211673.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993760|gb|EGD52191.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 187

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 15/184 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE + +DYV+ID  G+   ++ P  TL  L   G+   L+   HMR+D  ++
Sbjct: 1   MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS ++    V+++ + + K +   PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K +    V + D +  N+              A+ AL+ LGY + +A  A
Sbjct: 121 AERIILELKDK-LPKEIVFEGDNNFSNE--------------ALEALLALGYTKSEAIYA 165

Query: 181 VVSV 184
           +  +
Sbjct: 166 LADI 169


>gi|160879481|ref|YP_001558449.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans
           ISDg]
 gi|189045749|sp|A9KNV9|RUVA_CLOPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160428147|gb|ABX41710.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans
           ISDg]
          Length = 203

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +  + E+YV++D  G+ Y I+ P    S L  IGD         +R+D + L
Sbjct: 1   MLAFIQGELAEVKENYVVVDNNGMGYEIFIPHTVHSYLPAIGDKVKFHTYLQVREDGMAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL +V G+G + A+G+LS I+  +L  +++ ++ K I++ PGI  K 
Sbjct: 61  FGFLNREDLAMFKLLITVNGIGPKGAIGILSAISTDDLRFAVLAEDVKAISKAPGIGTKT 120

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           AS+++ ELK K     A   +    Q +S   K      +       AI ALV LGY   
Sbjct: 121 ASKLILELKDKFKLEDAFEATFQSNQVISTGGK-----GNNDGIREEAIQALVALGYSAT 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
            A  AV +V       ++D  +++ +LR
Sbjct: 176 DALKAVKAVEITSNMTSED--VLKFSLR 201


>gi|225568080|ref|ZP_03777105.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM
           15053]
 gi|225163033|gb|EEG75652.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM
           15053]
          Length = 205

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 2/185 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + ED V++DV GV Y IY   +++S L   G    +    ++++D ++L
Sbjct: 1   MISYIRGELAAVEEDKVIVDVGGVGYGIYMSGQSMSLLPSAGREVKIHTYLNVKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F L+  V G+G +  +G+LS ++  +L  ++I  + K I   PGI  K 
Sbjct: 61  FGFLTRDDLDIFRLIIGVNGIGPKGGLGILSALSPDDLRFAVISNDVKAIQAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +++ ELK K + +  V++       N   A   S+      A+ ALV LGYG  ++  
Sbjct: 121 AEKLILELKDK-LRIEDVLEHAAHGSENTSAAAAASVNEVQSEAVQALVALGYGSTESLK 179

Query: 180 AVVSV 184
           AV  V
Sbjct: 180 AVKQV 184


>gi|153814820|ref|ZP_01967488.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756]
 gi|331089652|ref|ZP_08338551.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847851|gb|EDK24769.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756]
 gi|330405020|gb|EGG84558.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 204

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 102/192 (53%), Gaps = 21/192 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  + E   +IDV G+ Y ++ P + L+ L  +G+   L+   ++R+D ++L
Sbjct: 1   MISYVKGELAAIEEQKAIIDVGGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS ++  EL  +I+  ++K+I+  PGI  K 
Sbjct: 61  FGFLTKDDLEIFRLVIGVSGIGPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKT 120

Query: 121 ASRIMTELKGK---------AISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVN 169
           A +++ EL+ K         A      +Q DM  +  N+ Q+           A+ ALV 
Sbjct: 121 AEKLIVELRDKVDIEKMLDHAAHPEETIQTDMAKTSANEMQSE----------AVQALVA 170

Query: 170 LGYGQDQATTAV 181
           LGYG  ++  AV
Sbjct: 171 LGYGSAESLRAV 182


>gi|113866527|ref|YP_725016.1| Holliday junction DNA helicase RuvA [Ralstonia eutropha H16]
 gi|123033276|sp|Q0KEC3|RUVA_RALEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113525303|emb|CAJ91648.1| holliday junction resolvasome, DNA-binding subunit RuvA [Ralstonia
           eutropha H16]
          Length = 193

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L  +G   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEVDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL ++I LQ +  + +IPGI  K 
Sbjct: 61  YGFGTASERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177
           A R++               +    +  E  H+   P+    A++ ++AL+ LGY + +A
Sbjct: 121 AERLLL--------------ELKGKLGAELGHVPGTPAVPDSAVDVLNALLALGYSEKEA 166

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+  V      ++D    I+LAL+A+S
Sbjct: 167 AAAIKQV-PAGTGVSDG---IKLALKALS 191


>gi|118594338|ref|ZP_01551685.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium
           HTCC2181]
 gi|118440116|gb|EAV46743.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium
           HTCC2181]
          Length = 193

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 108/206 (52%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+IKG +       +LID QGV Y I  P+ T   L   G   TL     +R+D   L
Sbjct: 1   MIGRIKGYLLEKIPPIILIDCQGVGYEIEVPMTTFFDLPDEGSEITLLTHLIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  V G+GA+VA+ +L  I +++L ++I   +  ++ +IPGI  K 
Sbjct: 61  FGFATAAERQMFRQLIKVNGIGAKVALSILGSIGSSDLADAIQHDDINMLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +   L      D S V K   HI  +        +AL++LGY    A+ A
Sbjct: 121 AERLVLELKDRLKDL----HIDPS-VKKHATHIEDIE-------NALISLGYSAKDASMA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            + +L +  +I D    IR AL+++S
Sbjct: 169 -IKLLPENISINDG---IRQALKSLS 190


>gi|270307810|ref|YP_003329868.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
 gi|270153702|gb|ACZ61540.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
          Length = 194

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 14/185 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  Y P  + + +G++G    +F   H+R+D + L
Sbjct: 1   MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPGI  K 
Sbjct: 61  FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGIGKKT 120

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           ASRI+ ELK K A S  + V   ++  N +              ++ L  LGY   +A  
Sbjct: 121 ASRIVLELKDKIAKSWEAGVLSQVTEANSD-------------ILATLTALGYSAGEAAK 167

Query: 180 AVVSV 184
           A+ S+
Sbjct: 168 AIASL 172


>gi|261337766|ref|ZP_05965650.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM
           20093]
 gi|270277219|gb|EFA23073.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM
           20093]
          Length = 212

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 11/214 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LIDV GV Y +      L+ L  +G   T+F    + QD I L
Sbjct: 1   MIGMLSGQVAAVDTAAALIDVHGVGYEVRMAGADLATL-HVGQDATVFTSMSVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    ++ F+ LQ V G+G +VA+ +L  + A +L  +I   ++  +A+ PG+  K 
Sbjct: 60  FGFLDHAAKRMFLQLQKVSGIGPKVALSLLGTLDAGQLAHAIYDGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178
           A +I+ ELKG   SL      D S  +   A     P     ++ + AL++LG+ Q  A 
Sbjct: 120 AQKIILELKG---SLDLAALDDASGSDTSVAASAHAPEDRGRLDVVEALISLGWRQQDAQ 176

Query: 179 TAVVSVLKKEK---NIADD--SQIIRLALRAISC 207
            AV SV+ ++     +A D   +++R AL ++  
Sbjct: 177 HAVDSVIHEQDLPTPLAADMVPEVLRAALTSLDS 210


>gi|303241604|ref|ZP_07328103.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus
           CD2]
 gi|302590824|gb|EFL60573.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus
           CD2]
          Length = 202

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +E  + +Y++++  GV Y IY  + T+  +  IG    ++   ++R+D + L
Sbjct: 1   MFAYIRGKLEYKHNEYIVVEANGVGYKIYTSLSTIQNVESIGSEVKIYTHLYVREDIMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL  V GVG + A+ V+S ++ ++   S+I  + K + +  GI  K+
Sbjct: 61  YGFLTQEEMGMFELLLGVSGVGPKAAISVISSMSPSKFGLSVITDDYKSLTKAQGIGNKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSM--PSFAINAISALVNLGYGQDQA 177
           A RI+ ELK K      + + DM +  N +   I +    S    AISALV LGY   +A
Sbjct: 121 AQRIILELKDK------IDKTDMVTSFNGKDGAIPANNDNSRVSEAISALVVLGYTATEA 174

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + AV SV   + ++     II+ AL+ ++
Sbjct: 175 SKAVASVYSDDMDL---ECIIKSALKGLA 200


>gi|326562883|gb|EGE13170.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 46P47B1]
 gi|326563676|gb|EGE13928.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis
           103P14B1]
 gi|326565244|gb|EGE15429.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 12P80B1]
 gi|326570251|gb|EGE20296.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC8]
 gi|326570988|gb|EGE21012.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC7]
 gi|326573284|gb|EGE23252.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis
           101P30B1]
 gi|326576898|gb|EGE26804.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis O35E]
          Length = 204

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +  C   IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSF-CQLTIGAQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK      +       +  + A   SM   A    SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPAD-NSMLIIA-EVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|161510997|ref|YP_087904.2| Holliday junction DNA helicase motor protein [Mannheimia
           succiniciproducens MBEL55E]
 gi|88941980|sp|Q65UP1|RUVA_MANSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 204

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV G+ Y +  P+ +   L +IG    LF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSF-AINAISALVNLGYG 173
           A R++ ELKGK      + Q D      E +H+ ++      P   A  A++AL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGIKQPDFFV---ESSHVGAVDPVTTSPEVPAEEAVAALMALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
              A   V  + K         Q+IR AL+A
Sbjct: 175 ASDAEKMVKRIAKPHLT---SEQLIREALKA 202


>gi|257126622|ref|YP_003164736.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis
           C-1013-b]
 gi|257050561|gb|ACV39745.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis
           C-1013-b]
          Length = 207

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 105/195 (53%), Gaps = 8/195 (4%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           DYV +D+ G+ Y IY  ++T   +  I     L++ T++++D I L+GF +  +R+ F  
Sbjct: 15  DYVALDINGLAYKIYISLKTFEKMSNIESTEKLYIHTNVKEDNISLYGFKTQNERELFKA 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG--KA 132
           L SV GVG ++A+ +LS     E+V+ I+    K+  ++PG+ +K A +I+ +LK   K 
Sbjct: 75  LISVNGVGPKLAIAILSTFNTKEIVDIILENEPKIFIKVPGLGIKKAQKIILDLKDKVKK 134

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK--N 190
           +  S ++ ++ + +N        +     +   AL +LGY    A T V   +K ++   
Sbjct: 135 LEFSEIINENSNTLNGNNISSSEILLMKEDLKLALESLGY----ADTDVSKWIKNDELIK 190

Query: 191 IADDSQIIRLALRAI 205
           I + S+ I++ L+ I
Sbjct: 191 IKNISEAIKIILKRI 205


>gi|52306819|gb|AAU37319.1| RuvA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 215

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV G+ Y +  P+ +   L +IG    LF    +R+D   L
Sbjct: 12  MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 71

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 72  FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 131

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSF-AINAISALVNLGYG 173
           A R++ ELKGK      + Q D      E +H+ ++      P   A  A++AL+ LGY 
Sbjct: 132 AERLLVELKGK---FKGIKQPDFFV---ESSHVGAVDPVTTSPEVPAEEAVAALMALGYK 185

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
              A   V  + K         Q+IR AL+A
Sbjct: 186 ASDAEKMVKRIAKPH---LTSEQLIREALKA 213


>gi|296113247|ref|YP_003627185.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4]
 gi|295920941|gb|ADG61292.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4]
          Length = 204

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +  C   IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGRVQYLNAPIACILTSNGVGYEIELPIPSF-CQLTIGAQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK      +       +  + A   SM   A    SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPAD-NSMLIIA-EVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|325299672|ref|YP_004259589.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           salanitronis DSM 18170]
 gi|324319225|gb|ADY37116.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           salanitronis DSM 18170]
          Length = 199

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 111/204 (54%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG +      + ++D  GV Y I   + T S + GK      LF+   +R+D   
Sbjct: 1   MIEYIKGELAEAAPAFAVVDCNGVGYGINISLNTYSAIQGK--KEVKLFIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F+LL SV G+G   A  +LS ++  EL   I   N K++  + GI +K
Sbjct: 59  LYGFSTKQERELFLLLISVPGIGGNTARMILSALSPRELCNVISTGNDKLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LK K  S    ++++ S V+   +H  +   +   A++ALV LG+ Q  +  
Sbjct: 119 TAQRIIVDLKDKIASTG--IEEEASTVSS-LSHTVNTEIYE-EAVAALVMLGFAQAPSQK 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV S+LK E + A + ++I+LAL+
Sbjct: 175 AVASILKAEPDAAVE-RVIKLALK 197


>gi|261378519|ref|ZP_05983092.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685]
 gi|269145069|gb|EEZ71487.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685]
          Length = 194

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   +F +  +R+D   L
Sbjct: 1   MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFYNLPPLGETVQVFTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK I  +  V   +     E      +       +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLI--THTVTDGLFATPSENDETNDI-------VSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  + K      D  + +RLAL+
Sbjct: 172 VKGIPKG----TDVGEGVRLALK 190


>gi|299144015|ref|ZP_07037095.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518500|gb|EFI42239.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 198

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 116/211 (54%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIY---CPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           MI  IKG I  L ++Y++I+     YI+Y     I  L  + ++  +  L +    R+D 
Sbjct: 1   MIDYIKGIISELLDNYIVIENNFKGYIVYMSQSDIEQLEIMQEVKIYTRLII----REDN 56

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + L+GF++   R+ F LL SV  VG + +MG+LS ++A++++ +I+ +NSK +   PGI 
Sbjct: 57  MTLYGFVNKDSRKLFDLLTSVTSVGPKASMGILSTLSASQIIVAILDENSKALTSSPGIG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVN---KEQAHICSMPSFAINAISALVNLGYGQ 174
            K A RI+ ELK K    +   + D+  +    KE+  I         A+ AL++LGY +
Sbjct: 117 KKTADRIVLELKDKVSKYNFETRFDVKELKNSLKEEIDISP-------AVEALISLGYNK 169

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +A  A+  +   ++N  D S++I+ AL+ +
Sbjct: 170 YEAKKALTGI---DENF-DVSKMIKEALKRL 196


>gi|46445654|ref|YP_007019.1| Holliday junction DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81627839|sp|Q6MFA5|RUVA_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46399295|emb|CAF22744.1| probable Holliday junction DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 201

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 108/205 (52%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +        ++DV GV Y+++ P R L  L +IG+    +    +R+    L
Sbjct: 1   MFAYIKGVLAFFNPSQAIVDVHGVGYLLFIPCRLLGQLPQIGEPVQFYTTYVVREFSHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R  F +L +V G+G ++A+ ++  ++ +EL  +++ Q+   + ++PG+  K 
Sbjct: 61  YGFLSYQERDIFEILMNVTGIGPKMALSLIGHLSMSELQIAVMRQDLSTLCRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  ++  +   D      +     S+     +A+ AL+NLGY Q  A  A
Sbjct: 121 AERLIVELKDKLAAIGHLDTSDHIEPLTQDPKSKSVQ----DAMLALINLGYNQTTAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   +K+     D +Q+I +AL+ +
Sbjct: 177 IKQGMKELPEEIDLAQLITVALKHV 201


>gi|189424313|ref|YP_001951490.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ]
 gi|229560034|sp|B3E790|RUVA_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189420572|gb|ACD94970.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ]
          Length = 200

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 9/178 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D+V++DV GV Y +  P  T   L + G   TL + T +R+D I L
Sbjct: 1   MIALLTGQIAHKSPDHVILDVHGVGYRVMIPFSTYYELPEEGQ-ATLHIHTSVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++ +F LL SV G+G ++A  +LS I   +L  ++   +   ++ IPGI  K 
Sbjct: 60  YGFRTRTEKSFFQLLISVSGIGPKLARDILSNIQPPQLAAALQQGDLHKLSAIPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQ 176
           A R++ ELK KA  L      D   +    A   S+P+ ++  +  SALVNLGY   Q
Sbjct: 120 AERLVLELKDKAGKL------DSGSIPAGDAVGRSLPAGSVLDDVSSALVNLGYKDPQ 171


>gi|261400495|ref|ZP_05986620.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC
           23970]
 gi|269209755|gb|EEZ76210.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC
           23970]
          Length = 194

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K     AD  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPKG----ADVGEGVRLALK 190


>gi|253681607|ref|ZP_04862404.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str.
           1873]
 gi|253561319|gb|EES90771.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str.
           1873]
          Length = 197

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 100/184 (54%), Gaps = 6/184 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    L +DY++++   + Y IY    T+S +  I +   +++E  +R+D + +
Sbjct: 1   MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMSNMPNINEEVKIYIEQIVREDFMGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F LL ++ GVG++ A+ +LS    + L +SI+ ++ K++ + PGI  KI
Sbjct: 61  YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVSNLKKSILSEDYKMLTKAPGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K   +     +D+  ++K              ++ AL+ LG+ Q +A  A
Sbjct: 121 AQRITLELKDKIEKIYEDNLEDIDNLSKNSTRKYD------ESLEALIALGFSQKEAEKA 174

Query: 181 VVSV 184
           +  V
Sbjct: 175 LKDV 178


>gi|311104199|ref|YP_003977052.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8]
 gi|310758888|gb|ADP14337.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8]
          Length = 190

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       + +DV G+ Y I  P+ TL  L   G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTICVDVGGLGYDIDVPMSTLYSLPDTGARVTLYTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++  +L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFASAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK   L + +          Q+ I          ++AL+ LGY + ++ +A
Sbjct: 121 AERLLLEMRGK---LGADIGASPHAAPDNQSDI----------LNALLALGYSEKESLSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +  L +   ++D    I+ AL+A+
Sbjct: 168 -LKTLPEGVGVSDG---IKQALKAL 188


>gi|197119680|ref|YP_002140107.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem]
 gi|226698732|sp|B5EAH2|RUVA_GEOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|197089040|gb|ACH40311.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem]
          Length = 199

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     +++++DV GV Y ++ P  T   L   G   +L + T +++D I L
Sbjct: 1   MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPVEGGALSLQIHTSVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL  V GVG ++A G+LS    +EL +S++  N   ++ IPGI  K 
Sbjct: 61  YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L     Q        +  I        + +SAL+NLGY +     A
Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGTTAPAKQEIRD------DVLSALINLGYKE-----A 169

Query: 181 VVSVLKKEKNIADDSQI 197
           VV     E  + +D+ +
Sbjct: 170 VVQKALAELKVTEDATV 186


>gi|269837708|ref|YP_003319936.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM
           20745]
 gi|269786971|gb|ACZ39114.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM
           20745]
          Length = 193

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 75/131 (57%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I   Y   VLID+ G+   +     T+  LG++GD   L+    +R+D I L
Sbjct: 1   MISGVRGPIHAKYPGIVLIDLHGLIIRVLTSQTTVDDLGEVGDHAELYTHLRVREDDITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + Q F LL SV GVG RVA+ +LS     E+   I  ++   ++++PGI  K 
Sbjct: 61  YGFSTPEELQLFELLTSVTGVGPRVALNILSSARPEEVHRVIESEDIAALSRVPGIGKKT 120

Query: 121 ASRIMTELKGK 131
           ASRI+ EL+GK
Sbjct: 121 ASRIILELRGK 131


>gi|262037466|ref|ZP_06010926.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii
           F0264]
 gi|261748501|gb|EEY35880.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii
           F0264]
          Length = 213

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 73/122 (59%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           DYV +D+ G+ Y I+  ++T   LG+ G    L+V TH+++D I  +GF ++ +R+ F  
Sbjct: 15  DYVALDINGLAYKIFISLKTFEALGETGQDEKLYVHTHVKEDDISFYGFKTENERELFKA 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L S  GVG ++ + +LS     +++  +I  NSK+  ++PG+  K A +I+ +LK K   
Sbjct: 75  LISTSGVGPKLGLAILSTYNVKDVINIVIESNSKLFTKVPGLGDKKAQKIILDLKDKVKK 134

Query: 135 LS 136
           L+
Sbjct: 135 LN 136


>gi|255325096|ref|ZP_05366202.1| holliday junction DNA helicase RuvA [Corynebacterium
           tuberculostearicum SK141]
 gi|255297661|gb|EET76972.1| holliday junction DNA helicase RuvA [Corynebacterium
           tuberculostearicum SK141]
          Length = 205

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +ID  GV Y      +TL  L + G+  T+     +++D + L
Sbjct: 1   MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGAEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179
           A R+  ELK K   ++     + +     +  I       + +++ ALV LG+  D+   
Sbjct: 120 AQRLALELKDK---VAGFAPSEPAAAGSVETAIAPAGGAVVESVTEALVGLGF-TDKGAR 175

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
            VV     E    D S ++R AL
Sbjct: 176 PVVESAYAENPDVDTSSLLRAAL 198


>gi|325205349|gb|ADZ00802.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M04-240196]
          Length = 194

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190


>gi|258512078|ref|YP_003185512.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478804|gb|ACV59123.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 208

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 108/193 (55%), Gaps = 7/193 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L   YV +DV+ V Y ++   RT + L  +GD   L+   H+R+D   L
Sbjct: 1   MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAAL-NLGDTAFLYTHHHVREDGWAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G ++A+ V+      E+V +I+ ++++ ++++PGI  K+
Sbjct: 60  YGFETIEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDAESLSRLPGIGRKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASR++ EL+ K   L+    +  +  +  Q       S A +A+SALV LGY   +A  A
Sbjct: 120 ASRLVVELREKLDDLAPAALRAPAPASSPQG------SAAEDAVSALVALGYRPREAEEA 173

Query: 181 VVSVLKKEKNIAD 193
           V +V +  +++ D
Sbjct: 174 VSAVGRGRQSVED 186


>gi|253997451|ref|YP_003049515.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8]
 gi|253984130|gb|ACT48988.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8]
          Length = 192

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +LID  GV Y    P+ T   L  IGD   +     +R+D   L
Sbjct: 1   MIGRLSGTLLEKTPPLILIDCNGVGYECEVPMSTFYNLPAIGDKVVMLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GA+ A+ +LS ++  +LV+++ LQ   ++ ++PG+  K 
Sbjct: 61  YGFGTSQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVALQEPSMLTRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  ++  V     + +N+ Q       S   + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKDK-FTIDGV-----AAMNEPQTK-----SATSDVLNALLALGYNEREA-VA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            V +L KE ++ D    I+ AL+ +S
Sbjct: 169 AVKLLDKEISVTDG---IKQALKLLS 191


>gi|150016408|ref|YP_001308662.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB
           8052]
 gi|189045748|sp|A6LTM6|RUVA_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149902873|gb|ABR33706.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB
           8052]
          Length = 198

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 15/204 (7%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG   G+ +DYV+++  G+ Y I+    T+S + K G+   L++E  +R+D I L+GF 
Sbjct: 5   IKGKYIGINKDYVIVENSGIGYKIFTSGATMSSMPKNGEEIMLYLEQIVREDFIGLYGFD 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S  + + F LL +V GVG + A+ +LS      L  +I++ + K I +  GI  K A+RI
Sbjct: 65  SKEELEMFKLLLTVSGVGPKAALSLLSISRVNNLKYAIMIGDEKHICRGVGIGKKTAARI 124

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + E+K K +    +V   +    K+  ++ ++      A+SAL+ LGY + +A     SV
Sbjct: 125 ILEIKDK-LKPDELVDSSLEIDTKDNENVMALSE----ALSALIALGYSEKEAE----SV 175

Query: 185 LKK-EKNIADDS--QIIRLALRAI 205
           LKK +KN   DS   II+ AL+A+
Sbjct: 176 LKKIDKN---DSVENIIKNALKAL 196


>gi|255281765|ref|ZP_05346320.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM
           14469]
 gi|255267832|gb|EET61037.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM
           14469]
          Length = 202

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +    E+  +I+  G+ + +Y   R    L + G    L+    +R+D I+L
Sbjct: 1   MIAFIKGTLVEAAENVAVIENNGIGFNVYITGRDAGQLVRGGMEVLLYTYMDVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F +L  V G+G + A GVL+ I+A EL  +++  + K I+  PGI  K 
Sbjct: 61  YGFLSKDDLEIFRMLLKVNGIGPKAAQGVLTAISANELRFAVLADDIKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179
           A +++ ELK K  SL    +Q ++   +  A   + P+     A+ ALV LGY    A  
Sbjct: 121 AQKLILELKDK-FSLQDTFEQKLA---ENTAAAAAAPNETQSEAVQALVALGYAGSDALK 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV +V   E    +D  I+R AL+ IS
Sbjct: 177 AVKAVHATEDMSTED--ILRAALKHIS 201


>gi|53720506|ref|YP_109492.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           K96243]
 gi|53726199|ref|YP_103912.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           23344]
 gi|67642316|ref|ZP_00441074.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse
           4]
 gi|76809765|ref|YP_334777.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710b]
 gi|121600711|ref|YP_991618.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1]
 gi|124384917|ref|YP_001027114.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10229]
 gi|126438536|ref|YP_001060376.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668]
 gi|126450738|ref|YP_001082059.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10247]
 gi|126453529|ref|YP_001067637.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 1106a]
 gi|134280414|ref|ZP_01767125.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305]
 gi|167000504|ref|ZP_02266316.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20]
 gi|167721174|ref|ZP_02404410.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei DM98]
 gi|167740150|ref|ZP_02412924.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 14]
 gi|167817363|ref|ZP_02449043.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 91]
 gi|167825771|ref|ZP_02457242.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 9]
 gi|167895840|ref|ZP_02483242.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 7894]
 gi|167904231|ref|ZP_02491436.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912490|ref|ZP_02499581.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 112]
 gi|167920442|ref|ZP_02507533.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei BCC215]
 gi|217421175|ref|ZP_03452680.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576]
 gi|226198378|ref|ZP_03793947.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813764|ref|YP_002898215.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           MSHR346]
 gi|242317479|ref|ZP_04816495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106b]
 gi|254178754|ref|ZP_04885408.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           10399]
 gi|254180688|ref|ZP_04887286.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1655]
 gi|254191517|ref|ZP_04898020.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194815|ref|ZP_04901245.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13]
 gi|254202624|ref|ZP_04908987.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH]
 gi|254207963|ref|ZP_04914313.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU]
 gi|254260441|ref|ZP_04951495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710a]
 gi|254299226|ref|ZP_04966676.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           406e]
 gi|254355897|ref|ZP_04972175.1| Holliday junction DNA helicase RuvA [Burkholderia mallei
           2002721280]
 gi|81379105|sp|Q63QX6|RUVA_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81604343|sp|Q62HA8|RUVA_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90134634|sp|Q3JNS6|RUVA_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230525|sp|A3MP73|RUVA_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230526|sp|A2S595|RUVA_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230527|sp|A1V065|RUVA_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230528|sp|A3NZ66|RUVA_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230529|sp|A3NDF5|RUVA_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52210920|emb|CAH36908.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243]
 gi|52429622|gb|AAU50215.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           23344]
 gi|76579218|gb|ABA48693.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710b]
 gi|121229521|gb|ABM52039.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1]
 gi|124292937|gb|ABN02206.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10229]
 gi|126218029|gb|ABN81535.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668]
 gi|126227171|gb|ABN90711.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106a]
 gi|126243608|gb|ABO06701.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10247]
 gi|134248421|gb|EBA48504.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305]
 gi|147746871|gb|EDK53948.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH]
 gi|147751857|gb|EDK58924.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU]
 gi|148024872|gb|EDK83050.1| Holliday junction DNA helicase RuvA [Burkholderia mallei
           2002721280]
 gi|157808883|gb|EDO86053.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           406e]
 gi|157939188|gb|EDO94858.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694668|gb|EDP84676.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           10399]
 gi|169651564|gb|EDS84257.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13]
 gi|184211227|gb|EDU08270.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1655]
 gi|217396587|gb|EEC36604.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576]
 gi|225929561|gb|EEH25579.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505707|gb|ACQ98025.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           MSHR346]
 gi|238523444|gb|EEP86882.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse
           4]
 gi|242140718|gb|EES27120.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106b]
 gi|243063559|gb|EES45745.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20]
 gi|254219130|gb|EET08514.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710a]
          Length = 193

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPPERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++ALV LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGPL----AGAASPSDHATDILNALVALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+L+L+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191


>gi|59802051|ref|YP_208763.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA 1090]
 gi|194099623|ref|YP_002002754.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999822|ref|ZP_04719746.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae 35/02]
 gi|240014978|ref|ZP_04721891.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI18]
 gi|240116581|ref|ZP_04730643.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID18]
 gi|240118805|ref|ZP_04732867.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID1]
 gi|240122047|ref|ZP_04735009.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID24-1]
 gi|240124344|ref|ZP_04737300.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID332]
 gi|254494604|ref|ZP_05107775.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           1291]
 gi|260439658|ref|ZP_05793474.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI2]
 gi|268595632|ref|ZP_06129799.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           35/02]
 gi|268602250|ref|ZP_06136417.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID18]
 gi|268604516|ref|ZP_06138683.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID1]
 gi|268682971|ref|ZP_06149833.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID332]
 gi|291042899|ref|ZP_06568640.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           DGI2]
 gi|293398091|ref|ZP_06642296.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62]
 gi|75355491|sp|Q5F636|RUVA_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560109|sp|B4RPG0|RUVA_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|59718946|gb|AAW90351.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA
           1090]
 gi|193934913|gb|ACF30737.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513644|gb|EEH62989.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           1291]
 gi|268549021|gb|EEZ44439.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           35/02]
 gi|268586381|gb|EEZ51057.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID18]
 gi|268588647|gb|EEZ53323.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID1]
 gi|268623255|gb|EEZ55655.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID332]
 gi|291013333|gb|EFE05299.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           DGI2]
 gi|291611354|gb|EFF40424.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62]
 gi|317165112|gb|ADV08653.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 194

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA +         +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAASPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K      D  + +RLAL+
Sbjct: 164 NEREAKAAVKGVPKG----TDVGEGVRLALK 190


>gi|300858594|ref|YP_003783577.1| holliday junction resolvasome helicase subunit A [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686048|gb|ADK28970.1| Holliday junction resolvasome helicase subunit A [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206306|gb|ADL10648.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
           pseudotuberculosis C231]
 gi|302330863|gb|ADL21057.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276548|gb|ADO26447.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
           pseudotuberculosis I19]
          Length = 203

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G +  +     +I+  GV Y +     TLS + +  +F   FV T M  R+D  
Sbjct: 1   MIVSLRGTVASIGLGSAVIECNGVGYEVLASPSTLSQMRRGEEF---FVLTTMVVREDSQ 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF SD  RQ F LLQ+V G+G ++A+   S ++A +L ++I  Q++K + +IPG+  
Sbjct: 58  TLYGFASDEARQMFTLLQTVSGLGPKLALAAQSVLSAVDLAQAIANQDAKTLQRIPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           ++A RI+ +LK K     S    D            +    +   + AL+ LG+ +  A 
Sbjct: 118 RVAERIIVDLKDKV----SAFITDGGATPASGGSSSATSDVSAQVLEALLGLGFTEKVAE 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+ SVL +  N A  SQ +RLAL  +
Sbjct: 174 PALNSVLSESPN-ATTSQALRLALSTL 199


>gi|331091226|ref|ZP_08340067.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404673|gb|EGG84212.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 201

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 113/205 (55%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + E+  +IDV GV Y I+ P +++  L  + +   L    H+++D ++L
Sbjct: 1   MISYIRGELVAVEEEKAVIDVGGVGYGIFMPAQSMGKLPPLHEEVRLHTYLHVKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F L+  V G+G + A+ +LS ++A +L  +++  + K I+   GI  K 
Sbjct: 61  YGFLTRDDLKVFKLVIGVSGIGPKGALNILSNLSADDLRFAVLSNDVKAISAAQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A +++ ELK K +S+  V++     V +E+  +    S     A+ ALV LGYG  ++  
Sbjct: 121 AEKLIIELKDK-LSMDDVLEH---MVQEEEVAVTGQNSGVQAEAVQALVALGYGNTESLR 176

Query: 180 AVVSVLKKEKNIADDSQ-IIRLALR 203
           AV  V   E N   D + +++ ALR
Sbjct: 177 AVRRV---EVNADSDVETVLKQALR 198


>gi|283457993|ref|YP_003362600.1| holliday junction resolvasome, DNA-binding subunit [Rothia
           mucilaginosa DY-18]
 gi|283134015|dbj|BAI64780.1| holliday junction resolvasome, DNA-binding subunit [Rothia
           mucilaginosa DY-18]
          Length = 209

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +IDV G   +++   RTLS L + G+  T+     +R++ + L
Sbjct: 4   MIASLTGRVAQVGLDHAVIDVNGFGMLVHATARTLSKL-RTGEEATVLTTMIVREESMTL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TA E+  ++   + K   ++PGI  K 
Sbjct: 63  YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    ++  +     +    + AL +LG+ +  A+ A
Sbjct: 123 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +K   N + +S+ + +ALR +
Sbjct: 174 IDAYVK--HNPSAESEPVGVALRGV 196


>gi|240017426|ref|ZP_04723966.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA6140]
 gi|240081568|ref|ZP_04726111.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA19]
 gi|240113847|ref|ZP_04728337.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae MS11]
 gi|240126556|ref|ZP_04739442.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           SK-92-679]
 gi|240129018|ref|ZP_04741679.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268597664|ref|ZP_06131831.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA19]
 gi|268599915|ref|ZP_06134082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           MS11]
 gi|268685136|ref|ZP_06151998.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687398|ref|ZP_06154260.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268551452|gb|EEZ46471.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA19]
 gi|268584046|gb|EEZ48722.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           MS11]
 gi|268625420|gb|EEZ57820.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627682|gb|EEZ60082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 194

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA +         +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDRLFAASPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K      D  + +RLAL+
Sbjct: 164 NEREAKAAVKGVPKG----TDVGEGVRLALK 190


>gi|300856546|ref|YP_003781530.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436661|gb|ADK16428.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 198

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 110/201 (54%), Gaps = 13/201 (6%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG  +G+ +DY++++  G+ Y I     T++   K+G+   L+++  +R+D I L+GFL
Sbjct: 5   IKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKVGENIVLYLQQIVREDFIGLYGFL 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +   F LL ++ G+GAR A+ +LS      L  +II ++ K + + PGI  K A RI
Sbjct: 65  TKEELSMFNLLLTINGIGARAALSILSISDVNNLKYAIISEDEKNLVRAPGIGKKTAQRI 124

Query: 125 MTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           + ELK K I +  +   + D+  +N  Q             + AL+ LGY + +   A+ 
Sbjct: 125 ILELKDK-IDVGELTNSEDDIDNINATQN--------TSEVLEALIALGYSEKEGNKALA 175

Query: 183 SVLKKEKNIADDSQIIRLALR 203
           S+ K +++  +D  +I+ AL+
Sbjct: 176 SIDKTKESSTED--MIKKALK 194


>gi|308070380|ref|YP_003871985.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681]
 gi|305859659|gb|ADM71447.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681]
          Length = 204

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 5/198 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++  L  +YV++DVQGV Y ++CP        K      +++  H+R+D I L
Sbjct: 1   MIDFLRGSVAHLENEYVVLDVQGVGYRVFCP--NPYAFAKTEGPVVIYIHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++Q F  L  V G+G RVA+G+L   T   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFATRDEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   + S+     + +  E        S+   A  AL  LGY  D     
Sbjct: 119 AQRMILDLKDKLDGIGSLGMA--TGLFAEPVVEEGEGSYWGEAREALKALGY-TDAELDK 175

Query: 181 VVSVLKKEKNIADDSQII 198
           V S +KK+    + + I+
Sbjct: 176 VWSRMKKDAKPDESADIL 193


>gi|325274574|ref|ZP_08140632.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51]
 gi|324100301|gb|EGB98089.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51]
          Length = 205

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 113/207 (54%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK   KA   S  +    + V+       S  S   +AISALV+LGY   +A+
Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPLPAASASSAEADAISALVSLGYKPQEAS 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+ ++  K+K      ++IR +L+ +
Sbjct: 178 KAIAAI--KDKAGLSSEELIRRSLKGM 202


>gi|91793239|ref|YP_562890.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans
           OS217]
 gi|122968746|sp|Q12N09|RUVA_SHEDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91715241|gb|ABE55167.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans
           OS217]
          Length = 203

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   +++DV GV Y +  P+ +   L ++    TL+    +R+D   L
Sbjct: 1   MIGRLNGILVEKHAPEIVLDVGGVGYELQVPMTSFYELPELEQSATLYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVSCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K  SL      +      +  +     +   +AISALV+LGY   QA+ A
Sbjct: 121 AERLVVEMRDKLKSLLEASVGNEREFMLQTNYTAPAANAEEDAISALVSLGYKPPQASRA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    K  K   D   +I+LAL+++
Sbjct: 181 VS---KAYKEGMDTETLIKLALKSM 202


>gi|148977429|ref|ZP_01814029.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium
           SWAT-3]
 gi|145963381|gb|EDK28646.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium
           SWAT-3]
          Length = 203

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 113/208 (54%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177
           A R++ E+K +   L      D+     + A I SMP+       A+SAL+ LGY   QA
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSMPTVHDAEEEAVSALLALGYKPTQA 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  VVS + KE   ++  Q+IR AL+++
Sbjct: 178 SK-VVSQVAKEGMTSE--QLIRDALKSM 202


>gi|56477680|ref|YP_159269.1| Holliday junction DNA helicase RuvA [Aromatoleum aromaticum EbN1]
 gi|81357290|sp|Q5P2U6|RUVA_AZOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56313723|emb|CAI08368.1| Holliday junction DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 199

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 15/209 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +++D  GV Y I  P+ T   L   G+  +LF    +R+D   L
Sbjct: 1   MIGRITGILLEKNPPQIVVDTHGVGYEIDVPMSTFYGLPATGESLSLFTHLAIREDGHFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++ ++L +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFASADERAAFRQLLKVSGIGARTALSVLSGLSVSDLAQAVALQETGRLVKIPGIGKKT 120

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ EL+   G+A+          S V    A      S  +N   AL+ LGY   +A
Sbjct: 121 AERLLLELRDKLGRALPGFGA-----STVPGAAAQPADSRSDILN---ALLALGYSDKEA 172

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +A+ ++   E  ++D    IR AL+ +S
Sbjct: 173 QSALKAI-PPETGVSDG---IRQALKLLS 197


>gi|304320107|ref|YP_003853750.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis
           HTCC2503]
 gi|303299010|gb|ADM08609.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis
           HTCC2503]
          Length = 202

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 4/194 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  +  +IDV GV Y +    R LS L + G    L  ET + +  IRL
Sbjct: 1   MIAALHGTVSVLSGENAIIDVNGVGYEVAATPRLLSSLAQ-GQEVRLITETLVAETYIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
             F +  +R  F LLQ+VQGVGA+ A+ +LS +T  +L +++   +  ++A+  G+  K+
Sbjct: 60  VAFQTIEERLTFRLLQTVQGVGAKAALAILSALTPADLFDAVEAGDKAMVARAQGVGPKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELKGK      +V    +  +       ++ S A +A++ALV LG+    A   
Sbjct: 120 ALRIVTELKGK---CGGIVGAFPAVASPRATSAAAVDSPAEDAVAALVALGFDHGAARRT 176

Query: 181 VVSVLKKEKNIADD 194
           + ++   E +  +D
Sbjct: 177 ISTLPDLETSRTED 190


>gi|291550303|emb|CBL26565.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus torques
           L2-14]
          Length = 202

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 1/184 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + E   +++  G+ Y IY   +TLS L  +G+   +    ++R+D ++L
Sbjct: 1   MISYIRGELAAVQEQKAIVEAGGIGYGIYMSQQTLSMLPAVGEEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D Q F LL  V G+G +  + +LS ++  EL  +++  + K I+  PGI  K 
Sbjct: 61  YGFLTGEDLQVFRLLIGVSGIGPKAGLNILSCLSPDELRFAVLAGDVKTISSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K +S+  V++Q      + +    +       A+ AL  LGYG  ++  A
Sbjct: 121 AEKLILELKDK-MSIEDVLEQAAHGGEQSKEIEATDTGMQAEAVQALTALGYGSAESLRA 179

Query: 181 VVSV 184
           V  V
Sbjct: 180 VKKV 183


>gi|312129386|ref|YP_003996726.1| holliday junction DNA helicase subunit ruva [Leadbetterella
           byssophila DSM 17132]
 gi|311905932|gb|ADQ16373.1| Holliday junction DNA helicase subunit RuvA [Leadbetterella
           byssophila DSM 17132]
          Length = 191

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 107/203 (52%), Gaps = 12/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +IDVQGV Y++   ++T + L  +G+ C LF    +R+D   L
Sbjct: 1   MIAHLNGILSEKEPAQAVIDVQGVGYLLKISLQTSAALPAVGEKCKLFCLQIIREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV G+G  +A+  LS +T  E+V++I+ ++ K I  I GI +K 
Sbjct: 61  YGFATREERVLFEHLISVSGIGPAIALVFLSSMTGPEIVQAIVSEDVKTIQGIKGIGLKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R + ELK K      + ++ M+      A I       + A++ALV LG  +  A  +
Sbjct: 121 AQRAVIELKDK------LKKEPMATTGTLPARI------RMEALAALVTLGIPKATAEKS 168

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++LK+        ++I+L+LR
Sbjct: 169 VDNILKRAPADITLEEVIKLSLR 191


>gi|162448567|ref|YP_001610934.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159149|emb|CAN90454.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 244

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 26/198 (13%)

Query: 1   MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPI------RTLSCLGKIG-DFCTLFVET 51
           +IG++ G++  EG  E  V++DV GV Y +  P+      R ++   K G D  TLFV T
Sbjct: 37  LIGRLSGHVVEEG-DEGTVVLDVSGVGYEVTVPLGAVGRARGIAANAKAGSDAITLFVHT 95

Query: 52  HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
           H+R+D + L+GF +  DR  F +L  +  +G ++AM +LS + A EL   I  + +  + 
Sbjct: 96  HVREDALLLYGFATREDRAAFRVLIGISSIGPKIAMAILSALGAGELAAVITRRETARLT 155

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-----SA 166
            IPG+  K A R++ ELK K + L +      +            P  A  A      SA
Sbjct: 156 AIPGVGKKTAERLVLELKDKLVHLPAAPLSPAAS-----------PPVATGAKQDLLHSA 204

Query: 167 LVNLGYGQDQATTAVVSV 184
           L  +GY   +A  AV ++
Sbjct: 205 LTRMGYRPAEAERAVTAL 222


>gi|315634723|ref|ZP_07890007.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter
           segnis ATCC 33393]
 gi|315476671|gb|EFU67419.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter
           segnis ATCC 33393]
          Length = 204

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQGV Y +  P+ +   L ++G   +LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYHLPEVGKQTSLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-----NAISALVNLGYGQD 175
           A R++ ELKGK      V   D   +  +     SM + A       A++AL+ LGY   
Sbjct: 121 AERLLVELKGK---FKGVKNNDF-FMQADHLPSLSMETIATAEPSNEAVAALIALGYKPV 176

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
            A   V  V    K      Q+IR AL+A
Sbjct: 177 DAEKMVKKV---SKPALSSEQLIREALKA 202


>gi|238924017|ref|YP_002937533.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium
           rectale ATCC 33656]
 gi|238875692|gb|ACR75399.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium
           rectale ATCC 33656]
          Length = 205

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +     D ++++  GV Y+IY P +    L   G+   ++    +R+D + L
Sbjct: 4   MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G +  + +LS + A +L  +I+  +SK I++ PGI  K 
Sbjct: 64  YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A R++ +LK K +SL    ++ +   N+      SM S   N A+ AL  LGY   ++  
Sbjct: 124 AQRVILDLKDK-LSLEDAFEKKLE--NQASGAAVSMNSTVKNDAVMALNALGYSSTESLK 180

Query: 180 AVVSV-LKKEKNIADDSQIIRLALR 203
           AV  V + ++ ++ D   +++LAL+
Sbjct: 181 AVSKVDITEDMDVED---VLKLALK 202


>gi|291524757|emb|CBK90344.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale
           DSM 17629]
 gi|291528922|emb|CBK94508.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale
           M104/1]
          Length = 205

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +     D ++++  GV Y+IY P +    L   G+   ++    +R+D + L
Sbjct: 4   MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G +  + +LS + A +L  +I+  +SK I++ PGI  K 
Sbjct: 64  YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A R++ +LK K +SL    ++ +   N+      SM S   N A+ AL  LGY   ++  
Sbjct: 124 AQRVILDLKDK-LSLEDAFEKKLE--NQTSGAAVSMNSTVKNDAVMALNALGYSSTESLK 180

Query: 180 AVVSV-LKKEKNIADDSQIIRLALR 203
           AV  V + ++ ++ D   +++LAL+
Sbjct: 181 AVSKVDITEDMDVED---VLKLALK 202


>gi|326575817|gb|EGE25740.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis CO72]
          Length = 204

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +  C   IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSF-CQLTIGAQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKG+      +       +  + A   SM   A    SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGQLNEFGEMHPMTAEGLFNQPAD-NSMLIIA-EVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|94309369|ref|YP_582579.1| Holliday junction DNA helicase RuvA [Cupriavidus metallidurans
           CH34]
 gi|123384032|sp|Q1LRB6|RUVA_RALME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|93353221|gb|ABF07310.1| component of RuvABC resolvasome, regulatory subunit [Cupriavidus
           metallidurans CH34]
          Length = 193

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L  IG   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAIGHPVTLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + GVGAR+A+ VLS ++  EL +++ +Q +  + +IPGI  K 
Sbjct: 61  FGFATATERNTFRELIKITGVGARMALAVLSGLSVPELAQAVTMQEAGRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+            +   A++ ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLG----HAPGATPLADSAVDILNALLALGYSEKEAAQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V      ++D    I+LAL+A+S
Sbjct: 170 IKQV-PAGTGVSDG---IKLALKALS 191


>gi|119774975|ref|YP_927715.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B]
 gi|166200259|sp|A1S6N9|RUVA_SHEAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119767475|gb|ABM00046.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B]
          Length = 205

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 113/211 (53%), Gaps = 13/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +   +   VLIDV GV Y +  P+ +   L   G    ++    +R+D   L
Sbjct: 1   MIGRLKGILVEKHAPEVLIDVGGVGYELQMPLTSFYELPLPGAEVIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F LL    GVG ++A+ +LS +TA E +  +   +   + ++PG+  K 
Sbjct: 61  YGFIHKEERSLFRLLIKANGVGPKLALTILSGMTAKEFIGCLERDDIATLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAI---NAISALVNLGYGQ 174
           A R++ E++ K   L S+++  M    +E   +++    P  A    +AI+AL++LGY  
Sbjct: 121 AERLLVEMRDK---LKSLMEASMGA-EREFVLKSNFTPAPVAATVEEDAIAALLSLGYKP 176

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            QA+ AV S  ++     D  Q+I+ AL+++
Sbjct: 177 QQASKAVSSAFQEG---MDPEQLIKAALKSM 204


>gi|229825022|ref|ZP_04451091.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC
           49176]
 gi|229790769|gb|EEP26883.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC
           49176]
          Length = 204

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 108/204 (52%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +EG+  + V+IDV G+      P   ++ L KI +   L    H+R+D ++L
Sbjct: 1   MIASVKGKLEGVTTESVIIDVNGLGVEAIVPTTVINLLPKIDENIKLHTYLHVREDVMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   D  +F LL +V G+G + A+ +LS +    L  +I+ +++K I +  GI  K 
Sbjct: 61  YGFLEKEDLDFFKLLITVNGIGPKAAIAILSSMPTDILTFAILSEDTKTIQKAQGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A +++ ELK K + +    Q   S +    A    + S     A+  L  LGY Q +A  
Sbjct: 121 AKKLVLELKDK-VGIIKTPQNTGSEIYDNAALTIGINSEIKDEAVQVLTALGYSQTEAVK 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           A+ +V   E+  ++  ++++L+L+
Sbjct: 180 AISTVEMYEEMTSE--ELVKLSLK 201


>gi|167629898|ref|YP_001680397.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum
           Ice1]
 gi|167592638|gb|ABZ84386.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum
           Ice1]
          Length = 274

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 80/131 (61%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G + GL +D +L+DV GV Y ++ P   L+ L ++G    +    + R+DQ+ L
Sbjct: 1   MIAFLRGRLVGLGDDCLLLDVSGVGYRVFVPATMLASLPQVGRDILIHTFYYAREDQVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +  +F LL  V GVG +V +G+LS  +  E+  +II ++   + +IPGI  K 
Sbjct: 61  YGFLTEEELAFFRLLLEVSGVGPKVGLGILSAYSVVEVQRAIIAEDVLALTRIPGIGRKT 120

Query: 121 ASRIMTELKGK 131
           A R++ EL+ K
Sbjct: 121 AQRLVIELRDK 131


>gi|322514922|ref|ZP_08067937.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus
           ureae ATCC 25976]
 gi|322119110|gb|EFX91264.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus
           ureae ATCC 25976]
          Length = 201

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 99/210 (47%), Gaps = 17/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IP I  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPSIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSFAINAISALVNLGYGQ 174
           A R++ ELKGK      V Q D       + H   M         A  A  ALV LGY  
Sbjct: 121 AERLLVELKGK---FKGVAQSDFF-----EEHSVEMIVATHSHDPADEAQDALVALGYKL 172

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             A   +  V    K  A   Q+IR AL+A
Sbjct: 173 ADADKMIKKV---NKAGATSEQLIREALKA 199


>gi|212212080|ref|YP_002303016.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuG_Q212]
 gi|226698728|sp|B6IYU3|RUVA_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212010490|gb|ACJ17871.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212]
          Length = 200

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G I      Y+L++V GV Y I  P+ T   L +  +   L+    +R+D   L
Sbjct: 1   MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+ F  L  V GVG ++A+ +LS I   E V  ++ QN   + +IPG+  K 
Sbjct: 61  YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E K +   LS     D       ++   S      +AISAL+ LGY   +A  A
Sbjct: 121 AERLVIETKDR---LSRWHTNDTPSPEGLRS---SNTQPTQDAISALMALGYKPQEAKRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + ++ K + +      +IRLAL+
Sbjct: 175 IDAIQKPDLSA---ETLIRLALK 194


>gi|325203380|gb|ADY98833.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240355]
          Length = 194

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190


>gi|313669264|ref|YP_004049548.1| Holliday junction DNA helicase [Neisseria lactamica ST-640]
 gi|313006726|emb|CBN88196.1| Holliday junction DNA helicase [Neisseria lactamica 020-06]
          Length = 194

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +  +  V   +     E      +       +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLV--AHTVTDGLFAAPSENDETNDI-------VGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V K      D  + +RLAL+
Sbjct: 172 VKGVPKG----TDVGEGVRLALK 190


>gi|320539865|ref|ZP_08039524.1| component of RuvABC resolvasome, regulatory subunit [Serratia
           symbiotica str. Tucson]
 gi|320030051|gb|EFW12071.1| component of RuvABC resolvasome, regulatory subunit [Serratia
           symbiotica str. Tucson]
          Length = 204

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 20/213 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VL++  GV Y +Y P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLLEANGVGYEVYMPMTCFYQLPELGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEHEEITTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI---------NAISALVNLG 171
           A R++ E+K +   L+  +  + S          S+P+ A+          A+SALV LG
Sbjct: 121 AERLVVEMKDRFKGLNGDLFTNSSG--------SSLPATAVQTADNDTEAEAVSALVALG 172

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           Y   +A+  V  +    K+ AD   +IR ALRA
Sbjct: 173 YKPQEASRMVSKI---AKSGADCETLIRDALRA 202


>gi|313202065|ref|YP_004040723.1| holliday junction DNA helicase ruva [Methylovorus sp. MP688]
 gi|312441381|gb|ADQ85487.1| Holliday junction DNA helicase RuvA [Methylovorus sp. MP688]
          Length = 192

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       V+ID  GV Y    P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +RQ F  L  V G+GA+ A+ +LS ++  +L +++ LQ + ++ ++PGI  K 
Sbjct: 61  YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK            D   V+   A      S + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELK------------DKFSVDGLAAPAGQAKSASGDVLNALLALGYNEREAMAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L  +  +AD    IRLAL+++S
Sbjct: 169 VKQ-LPADVVVADG---IRLALKSLS 190


>gi|283796454|ref|ZP_06345607.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1]
 gi|291075862|gb|EFE13226.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1]
          Length = 248

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 5/187 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +I  I+G +    +   +++  G+ Y I+ P+  L  L  +G    ++    +R+D + L
Sbjct: 42  VISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSL 101

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  DR+ F  L  V G+G + A+G+L  +   +L  +I+  + K I++ PGI  K 
Sbjct: 102 YGFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKT 161

Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ +LK K  +   L+SV   D      E A + +    A  A+ ALV LGY   +A
Sbjct: 162 AQRIILDLKDKVSAEEILASVTASDGGAKAPEAASLTA--EAAREAVDALVALGYSNLEA 219

Query: 178 TTAVVSV 184
           + AV  V
Sbjct: 220 SKAVKQV 226


>gi|212635161|ref|YP_002311686.1| Holliday junction DNA helicase RuvA [Shewanella piezotolerans WP3]
 gi|226725447|sp|B8CNY0|RUVA_SHEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212556645|gb|ACJ29099.1| DNA recombination protein, RuvA [Shewanella piezotolerans WP3]
          Length = 205

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VLIDV GV Y I  P+ +   L +IG    +F    +R+D   L
Sbjct: 1   MIGRIRGLLVEKQAPEVLIDVSGVGYEIQMPLTSFYELPEIGLEAVVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL    GVG ++A+ +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFISKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +           +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPVVANTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +V     +  D   +I+ AL+++
Sbjct: 181 KAVSAVY---VDGIDSESLIKSALKSM 204


>gi|194333233|ref|YP_002015093.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM
           271]
 gi|229560116|sp|B4S4U8|RUVA_PROA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194311051|gb|ACF45446.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM
           271]
          Length = 200

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  ++DV GV Y +     T   L   GD   L    H+++D ++L
Sbjct: 1   MYAYFRGELISSSRDNAIVDVGGVAYRLLISNSTYRQLPSSGDQVKLLAHLHVKEDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ + +RQ F+LL S+ GVG ++A+ +LS +   E+ E+I+    + +  I G+  K 
Sbjct: 61  YGFIEEEERQLFLLLLSISGVGPKLALAILSGLPVEEIQEAIMANKPETLFGISGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + L    QQ       + A   S+ S + +A+ AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDRILKL----QQTRPG---KTAGAGSVASLSEDALQALMTLGFSRASAQQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L   +N   +  I+R AL+ I
Sbjct: 174 VTRALLSAENPGVED-IVREALQNI 197


>gi|68171608|ref|ZP_00544978.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658340|ref|YP_507141.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123763770|sp|Q2GHE2|RUVA_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67998975|gb|EAM85656.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599797|gb|ABD45266.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 190

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 121/214 (56%), Gaps = 33/214 (15%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58
           MIG + G IE +Y +Y++++V  V YIIY   + L SC  K G+   L++ET++ +D + 
Sbjct: 1   MIGSLTGIIEEIYNNYIILNVGNVGYIIYVSHKVLQSC--KTGNNIKLYIETYVNRDNLT 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GFL   ++ +  +L ++ G+  + A+ +LS+++  E + S ++ N+K   +  GI  
Sbjct: 59  QLYGFLDKQEQDYMRMLVTINGINHKTAISILSKLSP-EQIFSAVVSNNKNAFRGNGIGE 117

Query: 119 KIASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           K+A RI TEL+ K     I  + ++++D                   ++++AL++LGY +
Sbjct: 118 KLAGRITTELQYKISKMPIEETLIIKED-------------------DSLAALISLGYDK 158

Query: 175 DQATTAVVSVLKKEKNIADDS--QIIRLALRAIS 206
            +A  A+  +   + N  DDS  +IIR AL+ +S
Sbjct: 159 LKAFNAIQEI---KANFPDDSIQEIIRKALQKLS 189


>gi|207727946|ref|YP_002256340.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           MolK2]
 gi|206591189|emb|CAQ56801.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           MolK2]
          Length = 193

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  V    A    M   A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGAVPGGPA----MSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    K+       S+ I+LAL+A+S
Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191


>gi|282882990|ref|ZP_06291594.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis
           315-B]
 gi|281297197|gb|EFA89689.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis
           315-B]
          Length = 198

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 116/207 (56%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKGNI  +YE  +++D   + Y+I      +S L  + +   +++   +R+D I L
Sbjct: 1   MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKLS-LNEELKIYLRLILREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   R  F LL +V  VG +++M +L  + +++L  +I+ +++ ++ + PG+  K 
Sbjct: 60  YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A+RI+ ELK K    S     D+S ++      I + P     A+ AL++LGY + +A  
Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP-----ALEALLSLGYNEYEAKI 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +V + ++     S+IIR AL+ ++
Sbjct: 175 ALRNVDQNQEL----SEIIRQALKVMA 197


>gi|254674127|emb|CBA09911.1| holliday junction DNA helicase [Neisseria meningitidis alpha275]
 gi|325145258|gb|EGC67537.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240013]
          Length = 194

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V +      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190


>gi|254000106|ref|YP_003052169.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4]
 gi|253986785|gb|ACT51642.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4]
          Length = 192

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       V+ID  GV Y    P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +RQ F  L  V G+GA+ A+ +LS ++  +L +++ LQ + ++ ++PGI  K 
Sbjct: 61  YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK            D   V+   A      S + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELK------------DKFSVDGLTAPAGQPKSASGDVLNALLALGYNEREAMAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L  +  +AD    IRLAL+++S
Sbjct: 169 VKQ-LPADVVVADG---IRLALKSLS 190


>gi|193214311|ref|YP_001995510.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC
           35110]
 gi|229560019|sp|B3QVA9|RUVA_CHLT3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193087788|gb|ACF13063.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC
           35110]
          Length = 200

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G +   +   ++++V GV Y++     T   L  IG+   +    ++R+D ++L
Sbjct: 1   MLSYLSGTLIEKFSTEIVVEVNGVGYLLNISATTHEKLPAIGNQIKILTYLYVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  DR+ F LL ++ GVG ++A  +LS ++  +L ES+I  ++K +  I G+  K 
Sbjct: 61  YGFITTEDREVFKLLIAISGVGPKLAQTILSGMSTAQLRESVIAGDTKALTAIAGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K + L      D+    KE A          +A SAL++LG+ +  A  A
Sbjct: 121 AERIILELKDKLVKL------DLKIDIKETAFRSDKQQVRNDAYSALISLGFTKSIAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + + +  + + D  +IR+ALR +
Sbjct: 175 MRAAIAEVPDGSVD-DLIRVALRHV 198


>gi|300741595|ref|ZP_07071616.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567]
 gi|300380780|gb|EFJ77342.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567]
          Length = 206

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G++  +  +  ++DV G   ++    RTLS L + G   TL     +R+D + L
Sbjct: 1   MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TATE+  ++   + K   ++PGI  K 
Sbjct: 60  YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I     + +  +  N     I   P      + AL +LG+ +  A  A
Sbjct: 120 ARRIVLELAGKLI-----LSEGQAEENAPAQGIAWKPQV----MDALTSLGWSEKDADAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +  + N   + + + +ALR +
Sbjct: 171 IDAYV--QHNPDAEKEAVGVALRGV 193


>gi|291612984|ref|YP_003523141.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus
           ES-1]
 gi|291583096|gb|ADE10754.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus
           ES-1]
          Length = 192

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DVQGV Y +  P+ T   L  + +   L  +  +R+D   L
Sbjct: 1   MIGRLSGTLLEKNPPQIVLDVQGVGYEVDVPMSTFYNLPALHEKVVLHTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R  F  L  + GVG ++A+ VLS ++  +L  ++  +++  + +IPG+  K 
Sbjct: 61  FGFLTHEERVAFRQLLKISGVGPKLALSVLSGLSLADLALAVANKDASRLTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK     +                 S+PS + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELQGKFAVAGAGAMA------------GSVPSSSSDIVNALLGLGYNEKEADWA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               L KE  +AD    IR AL+ +S
Sbjct: 169 AKQ-LPKEAGVADG---IRQALKLLS 190


>gi|160889167|ref|ZP_02070170.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492]
 gi|156861174|gb|EDO54605.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492]
          Length = 200

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I  L     +ID  G+ Y +   + T + + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177
            A RI+ +LK K I   SVV  +   +      + S  +  +   AI+AL  LG+ Q  +
Sbjct: 119 TAQRIIVDLKDK-IKTGSVVAGNAGTI----GTLVSAANAQVQEEAIAALTMLGFAQAPS 173

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V+++LK+E + A   Q+I+LAL+
Sbjct: 174 QKVVLAILKEEPS-APVEQVIKLALK 198


>gi|298242494|ref|ZP_06966301.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM
           44963]
 gi|297555548|gb|EFH89412.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM
           44963]
          Length = 196

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 16/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G ++  + D+V + V G    ++ P  T+S LG+ G    L    HMR+D I L
Sbjct: 1   MITSIHGILQTCHPDHVTVRVGGFGIQVFAPATTISGLGETGTEVELHTHFHMREDGIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +++DR  F  L +V GVG RVA+ +LS + A  L ++I  ++ + +    G+  ++
Sbjct: 61  YGFATEMDRDAFEQLIAVNGVGPRVALSLLSVMDAPALYKAIADEDQQRLGLAKGVGKRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178
           A++++  LKGK   L S+V             I  +PS       + AL+ LG+   +A 
Sbjct: 121 AAQLILALKGK---LPSIVPAGT---------ISGVPSGKLQTEVLEALMGLGFSSAEAQ 168

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+  + +++    +  Q +  ALR  S
Sbjct: 169 AAIAKIPQEQAMTLE--QQVTYALRTFS 194


>gi|304389092|ref|ZP_07371136.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           meningitidis ATCC 13091]
 gi|304336965|gb|EFM03155.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           meningitidis ATCC 13091]
          Length = 194

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +  L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVGTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190


>gi|299533018|ref|ZP_07046405.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44]
 gi|298719242|gb|EFI60212.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44]
          Length = 191

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G    L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  + +    Q +   N +Q  I          + AL+ LGY   +A+ A
Sbjct: 121 AERLLLELKGKIGADTGA--QSLFANNNDQNDI----------LQALMALGYSDKEASAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LKK       S+ I+LAL+A++
Sbjct: 169 ----LKKLPPDVGVSEGIKLALKALT 190


>gi|300813213|ref|ZP_07093581.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512666|gb|EFK39798.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 198

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 116/207 (56%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKGNI  +YE  +++D   + Y+I      +S L  + +   +++   +R+D I L
Sbjct: 1   MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKLS-LNEELKIYLRLILREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   R  F LL +V  VG +++M +L  + +++L  +I+ +++ ++ + PG+  K 
Sbjct: 60  YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A+RI+ ELK K    S     D+S ++      I + P     A+ AL++LGY + +A  
Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP-----ALEALLSLGYNEYEAKI 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +V + ++     S+IIR AL+ ++
Sbjct: 175 ALRNVDQSQEL----SEIIRQALKVMA 197


>gi|221064959|ref|ZP_03541064.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1]
 gi|220709982|gb|EED65350.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1]
          Length = 191

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G    L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  + +    Q +   N EQ  I            AL+ LGY   +A+ A
Sbjct: 121 AERLLLELKGKIGADTGA--QSLFANNSEQNDIQ----------QALMALGYSDKEASAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LKK       S+ I+LAL+A++
Sbjct: 169 ----LKKLPPEVGVSEGIKLALKALT 190


>gi|315923964|ref|ZP_07920192.1| crossover junction ATP-dependent DNA helicase RuvA
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622804|gb|EFV02757.1| crossover junction ATP-dependent DNA helicase RuvA
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 231

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 97/189 (51%), Gaps = 2/189 (1%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG +     D V+I+  G+ Y ++  + T++ L  + +   L +    R+D + L+GF 
Sbjct: 32  IKGELSAQSADTVVIENNGIGYRVHVSLTTIAELPPLHEQLKLLLYPAFREDDVTLYGFA 91

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +R  F  L S+ G+G + AMG+LS+    EL+  I+  ++K IA+ PGI  K A RI
Sbjct: 92  TAEERGLFGTLISISGIGPKAAMGLLSQFAEPELIRHIVNADAKAIARAPGIGKKTAERI 151

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + ELK +   +  V ++  + V    A + +  +     ++ L+ LGY   +A+  V   
Sbjct: 152 ILELKDRYKDV--VAEEGDAPVGGATAKLRAADNLTNEGVNGLLGLGYTYAEASDLVARA 209

Query: 185 LKKEKNIAD 193
           L  +  I +
Sbjct: 210 LAPDMTIEE 218


>gi|289578210|ref|YP_003476837.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus
           Ab9]
 gi|297544491|ref|YP_003676793.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527923|gb|ADD02275.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus
           Ab9]
 gi|296842266|gb|ADH60782.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 187

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE + ++YV+ID  G+   ++ P  TL  L   G+   L+   H+R+D  ++
Sbjct: 1   MIEYIRGMIEDIGQNYVIIDFMGIGIKVFVPFSTLKALPTKGNITKLYTYLHVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS +      + +   + K +  +PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVNGVGPKGALSILSVVPIDNFAKVVNTGDYKALTLVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K +    V + D +  N+              A+ AL+ LGY + +A +A
Sbjct: 121 AERIILELKDK-LPKEIVFESDNNLSNE--------------ALEALLALGYSKSEAISA 165

Query: 181 VVSV 184
           +  +
Sbjct: 166 LADI 169


>gi|325128974|gb|EGC51825.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis N1568]
          Length = 194

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIIIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +  L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHAVTDGLFAAAPAADETEDIVGTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190


>gi|255327194|ref|ZP_05368269.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC
           25296]
 gi|255295812|gb|EET75154.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC
           25296]
          Length = 206

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 108/205 (52%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+V G   ++Y   RTLS L + G+  T+     +R++ + L
Sbjct: 1   MIASLTGRVAQVGLDHAVINVNGFGMLVYATARTLSKL-RTGEEATVLTTMIVREESMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TA E+  ++   + K   ++PGI  K 
Sbjct: 60  YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    ++  +     +    + AL +LG+ +  A+ A
Sbjct: 120 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +  + N A +++ + +ALR +
Sbjct: 171 IDAYV--QHNPAAETEPVGVALRGV 193


>gi|254787341|ref|YP_003074770.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901]
 gi|259495657|sp|C5BQT5|RUVA_TERTT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|237687527|gb|ACR14791.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901]
          Length = 206

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ GN+       +++D+ GV Y +  P+ T   L ++     L     + +   +L
Sbjct: 1   MIGRLTGNLVVKQAPNLMVDINGVGYDLLAPMSTFYQLPELDAKVVLHTHFAVSETSQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   DR++F +L  V GVG ++A+G++S +   ++V  I+  N   + ++PG+  K 
Sbjct: 61  FGFIDQQDREFFRMLIKVNGVGPKMAVGIMS-METNDIVRCILEDNLNALVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  S  ++  V    S V  + A   S  +    A SALV LGY   +A+
Sbjct: 120 AERLIIEMRDKLKSWQVTPSVDATGSLVALDSAA-PSQNAIVAEAESALVALGYKPVEAS 178

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            AV  V   E   ++D  +IRLALR
Sbjct: 179 KAVARVTSDEITRSED--LIRLALR 201


>gi|121634135|ref|YP_974380.1| Holliday junction DNA helicase motor protein [Neisseria
           meningitidis FAM18]
 gi|166230574|sp|A1KRU4|RUVA_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120865841|emb|CAM09573.1| Holliday junction DNA helicase [Neisseria meningitidis FAM18]
          Length = 194

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +  L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHAVTDGLFAAAPAADETEDIVGTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190


>gi|73748284|ref|YP_307523.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1]
 gi|289432333|ref|YP_003462206.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT]
 gi|90134867|sp|Q3ZZK6|RUVA_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|73660000|emb|CAI82607.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1]
 gi|288946053|gb|ADC73750.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT]
          Length = 194

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 12/184 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  Y P  + + +G +G    +F   H+R+D + L
Sbjct: 1   MISSLNGILEASGKDWAVINVSGVGFRCYMPATSPALIGGLGQRVRVFTHLHVREDALSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPGI  K 
Sbjct: 61  FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           +SRI+ ELK            D    N E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 SSRIILELK------------DKIAKNWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168

Query: 181 VVSV 184
           + S+
Sbjct: 169 ISSL 172


>gi|290475277|ref|YP_003468165.1| Holliday junction helicase subunit A [Xenorhabdus bovienii SS-2004]
 gi|289174598|emb|CBJ81392.1| Holliday junction helicase, subunit A [Xenorhabdus bovienii
           SS-2004]
          Length = 205

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L +IG   TLF +  +R+D   L
Sbjct: 1   MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQEATLFTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAITSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +   L+  +    + +N     +QA+  S       A SALV+LGY   +
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSNDINLPAVAKQAN--SNTDIEAEAASALVSLGYKLQE 178

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A+  V  V K     AD   +IR ALRA
Sbjct: 179 ASRMVSKVAKPG---ADCETLIREALRA 203


>gi|88801662|ref|ZP_01117190.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii
           23-P]
 gi|88782320|gb|EAR13497.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii
           23-P]
          Length = 193

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V++D  GV Y+++  + T + L    +   L+    +R+D   L
Sbjct: 1   MITQVRGRLVEKNPTEVVVDCNGVGYLLHISLNTYAAL-PADENVVLYTHLSVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R  F  L SV GVG  +A  +LS +TA E+ ++I  +N  +I  + GI  K 
Sbjct: 60  FGFINKTERAIFKFLISVSGVGPSIARTMLSSMTAEEIQQAIASENVALIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +    + +  MS  N  +            A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIVDLKDKIVKTFDLDEVSMSPSNTNKGE----------ALSALEVLGFQRKQSDKL 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +++K+  N A   QII+LAL+++
Sbjct: 170 VATIVKEYPN-ATIEQIIKLALKSL 193


>gi|167623851|ref|YP_001674145.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis
           HAW-EB4]
 gi|189045770|sp|B0TSA6|RUVA_SHEHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167353873|gb|ABZ76486.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis
           HAW-EB4]
          Length = 205

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 2/186 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VL+DV GV Y I  P+ +   L ++G    ++    +R+D   L
Sbjct: 1   MIGRIRGLLIEKQAPEVLVDVSGVGYEIQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL    GVG ++ + +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFISKQERSLFRLLIKANGVGPKLGLTILSGMTAREFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +        ++ +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPEAVNTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSV 184
            AV SV
Sbjct: 181 KAVSSV 186


>gi|218128788|ref|ZP_03457592.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697]
 gi|317475376|ref|ZP_07934640.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii
           1_2_48FAA]
 gi|217989016|gb|EEC55332.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697]
 gi|316908404|gb|EFV30094.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii
           1_2_48FAA]
          Length = 198

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L     +ID  G+ Y +   + T + + GK    C L++   +R+D   
Sbjct: 1   MIEYIKGEIAELSPANAIIDCNGLGYAVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R+ F+LL SV G+G   A  +LS ++ +EL+ +I   N+ ++  + GI +K
Sbjct: 59  LYGFIDKQERELFLLLISVSGIGGNTARMILSALSPSELINAISTGNANLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ +LK K I    +     D+S      A +         AI+AL  LG+ Q  +
Sbjct: 119 TAQRVIVDLKDK-IKPGGIAAGTTDISAFTAANAQVQE------EAIAALTMLGFAQAPS 171

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V+++LK++   A   Q+I+LAL+
Sbjct: 172 QKVVMAILKEDAG-APVEQVIKLALK 196


>gi|270296033|ref|ZP_06202233.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20]
 gi|270273437|gb|EFA19299.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20]
          Length = 200

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 111/206 (53%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I  L     +ID  G+ Y +   + T + + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177
            A RI+ +LK K I   SVV  +   +      + S  +  +   A++AL  LG+ Q  +
Sbjct: 119 TAQRIIVDLKDK-IKTGSVVAGNAGTI----GTLVSAANAQVQEEAVAALTMLGFAQAPS 173

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V+++LK+E + A   Q+I+LAL+
Sbjct: 174 QKVVLAILKEEPS-APVEQVIKLALK 198


>gi|161870798|ref|YP_001599971.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 053442]
 gi|189045759|sp|A9M3B7|RUVA_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161596351|gb|ABX74011.1| Holliday junction DNA helicase [Neisseria meningitidis 053442]
 gi|308388484|gb|ADO30804.1| Holliday junction DNA helicase [Neisseria meningitidis alpha710]
 gi|325130991|gb|EGC53718.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           OX99.30304]
 gi|325131591|gb|EGC54298.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M6190]
 gi|325143104|gb|EGC65451.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           961-5945]
 gi|325143174|gb|EGC65520.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           961-5945]
 gi|325197549|gb|ADY93005.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis G2136]
          Length = 194

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V +      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190


>gi|153955759|ref|YP_001396524.1| Holliday junction DNA helicase RuvA [Clostridium kluyveri DSM 555]
 gi|219856126|ref|YP_002473248.1| hypothetical protein CKR_2783 [Clostridium kluyveri NBRC 12016]
 gi|146348617|gb|EDK35153.1| RuvA [Clostridium kluyveri DSM 555]
 gi|219569850|dbj|BAH07834.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 196

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 9/181 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG  +G+ +DY++++  G+ Y I     T++   KI +  TL+++  +R+D I L+GFL
Sbjct: 5   IKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKIDENITLYLQQIVREDFIGLYGFL 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +   F LL ++ G+GA+ A+ +LS  +   L  +II  + K + + PG+  K A RI
Sbjct: 65  TKEEINMFNLLLTINGIGAKAALSLLSISSVNNLKYAIISGDEKNLIRAPGVGKKTAQRI 124

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATTAVVS 183
           + ELK K         +    +N+E+ H   S     +  + AL+ LGY + +A  AV S
Sbjct: 125 ILELKDKI--------KPEEIINQEKDHRQVSQEEETMEVLEALIALGYSEKEAGRAVAS 176

Query: 184 V 184
           +
Sbjct: 177 I 177


>gi|295399354|ref|ZP_06809336.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110086|ref|YP_003988402.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1]
 gi|294978820|gb|EFG54416.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215187|gb|ADP73791.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1]
          Length = 199

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 110/205 (53%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    S         T++   ++R+D + L
Sbjct: 1   MIEFIRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDMLAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     +LVE+I  +N   + + PG+  K 
Sbjct: 60  YGFRTREERALFAKLLQVSGIGPKGGLAILAAGRPEQLVEAIEQENETFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  ++++    D+    +E +H+ ++      AI AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTAVAARTYPDLFHPEEEPSHLSALE----EAIEALKALGYAEREIQKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S++K  +N++ D Q ++ AL+ +
Sbjct: 176 VPSLMK--ENLSTD-QYVKRALQQL 197


>gi|302550160|ref|ZP_07302502.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467778|gb|EFL30871.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes
           DSM 40736]
          Length = 201

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 17/203 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RMGQPAKLHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ ELK   G+ I  +  V   +S   ++Q H            +AL+ LGY   +A
Sbjct: 120 AQKLLLELKDRLGEPIG-APAVGAPVSNGWRDQLH------------AALIGLGYATREA 166

Query: 178 TTAVVSVLKKEKNIADDSQIIRL 200
             AV +V  + + +    Q+ +L
Sbjct: 167 DEAVAAVTPQAEAVEGTPQVGQL 189


>gi|25028330|ref|NP_738384.1| Holliday junction DNA helicase motor protein [Corynebacterium
           efficiens YS-314]
 gi|259507385|ref|ZP_05750285.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens
           YS-314]
 gi|29336725|sp|Q8FPK4|RUVA_COREF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|23493615|dbj|BAC18584.1| holliday junction DNA-helicase RuvA [Corynebacterium efficiens
           YS-314]
 gi|259165010|gb|EEW49564.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens
           YS-314]
          Length = 204

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 3/191 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+ QGV Y +     TL+ L + G+  TL     +R+D ++L
Sbjct: 1   MIASLRGTVISIGLGTAVIECQGVGYEVTTTPTTLARLQR-GEEATLLTTMVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D  R+ F LLQ+V G+G R+A+   S +T  E+ ++I   ++K + ++PG+  ++
Sbjct: 60  YGFIDDQSREMFALLQTVTGLGPRLALACESVLTPLEIAQAIAGGDAKTLQRVPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +  V  D +     Q               AL  LG+ + QA  A
Sbjct: 120 ADRLIVELKDKVAAYTVGVVDDGAPTAPTQGVAPV--VVVDQVTQALTGLGFTEKQADDA 177

Query: 181 VVSVLKKEKNI 191
           V +VL  +  +
Sbjct: 178 VAAVLSADPGL 188


>gi|120554625|ref|YP_958976.1| Holliday junction DNA helicase RuvA [Marinobacter aquaeolei VT8]
 gi|166230564|sp|A1U1C0|RUVA_MARAV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120324474|gb|ABM18789.1| Holliday junction DNA helicase subunit RuvA [Marinobacter aquaeolei
           VT8]
          Length = 209

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        L++  G+ Y I  P  T   L + G   TL     +R+D   L
Sbjct: 1   MIGRIRGMLIEKSPGQALVECSGLGYEIDIPYTTFFHLPETGQEVTLHTHFAVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S LDR  F LL  V GVG ++A+G+LS + A + +  +  +++  + ++PG+  K 
Sbjct: 61  YGFASRLDRNLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVEARDANSLVKLPGVGKKT 120

Query: 121 ASRIMTE-------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++ E       L+G+ +     V          QA     P     A +AL+ LGY 
Sbjct: 121 AERLLIEMADRIGQLEGQFVPSQPDVPTGAGAATASQAG----PDPREEAEAALIALGYK 176

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALR 203
             +A  A+  V   + N      +IRLAL+
Sbjct: 177 PQEAAKAISKVAGPDMN---SETLIRLALK 203


>gi|57234748|ref|YP_181186.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes
           195]
 gi|90134862|sp|Q3Z9B3|RUVA_DEHE1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57225196|gb|AAW40253.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes
           195]
          Length = 194

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 77/131 (58%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  Y P  + + +G++G    +F   H+R+D + L
Sbjct: 1   MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPG+  K 
Sbjct: 61  FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGVGKKT 120

Query: 121 ASRIMTELKGK 131
           ASRI+ ELK K
Sbjct: 121 ASRIVLELKDK 131


>gi|197301661|ref|ZP_03166731.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC
           29176]
 gi|197299101|gb|EDY33631.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC
           29176]
          Length = 205

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + E   ++DV GV Y IY P + LS L  +G    +    ++R+D ++L
Sbjct: 1   MISYIRGELCDIEEQKAIVDVNGVGYGIYMPQQALSLLPPMGQQVKIHTYLNIREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL  V G+G +  + +LS ++  EL  +++  ++K I+  PGI  K 
Sbjct: 61  FGFLTKEDLNVFRLLIGVNGIGPKAGLNILSCLSPDELRFAVLSGDAKAISATPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A +++ ELK K +++  +++      + E   + S    A N     A+ AL  LGYG  
Sbjct: 121 AEKLILELKDK-LNIEDMLEHAAHGGDSED--LASGTDTASNTMQAEAVQALTALGYGSA 177

Query: 176 QATTAV 181
           ++  AV
Sbjct: 178 ESLRAV 183


>gi|29654859|ref|NP_820551.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 493]
 gi|153208743|ref|ZP_01946981.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831144|ref|YP_001597405.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331]
 gi|165918688|ref|ZP_02218774.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334]
 gi|212219280|ref|YP_002306067.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuK_Q154]
 gi|44888458|sp|Q83BE2|RUVA_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045751|sp|A9N9A2|RUVA_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698727|sp|B6J505|RUVA_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29542128|gb|AAO91065.1| holliday junction DNA helicase [Coxiella burnetii RSA 493]
 gi|120575775|gb|EAX32399.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763011|gb|ABX78653.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331]
 gi|165917623|gb|EDR36227.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334]
 gi|212013542|gb|ACJ20922.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 200

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G I      Y+L++V GV Y I  P+ T   L +  +   L+    +R+D   L
Sbjct: 1   MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+ F  L  V GVG ++A+ +LS I   E V  ++ QN   + +IPG+  K 
Sbjct: 61  YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E K     LS     D       ++   S      +AISAL+ LGY   +A  A
Sbjct: 121 AERLVIETKD---GLSRWHTNDTPSPEGLRS---SNTQPTQDAISALMALGYKPQEAKRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + ++ K + +      +IRLAL+
Sbjct: 175 IDAIQKPDLSA---ETLIRLALK 194


>gi|322420882|ref|YP_004200105.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18]
 gi|320127269|gb|ADW14829.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18]
          Length = 199

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 12/177 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D+V++DV GV Y ++ P  T   L   G   TL + T +++D I L
Sbjct: 1   MIALLTGKIAYKAPDHVILDVNGVGYHVFIPFSTYYALPAEGGTATLQIHTSVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL  V GVG ++A  +LS     EL ES++  +   ++ IPGI  K 
Sbjct: 61  YGFRTQQEKELFQLLIGVSGVGPKLANSILSNSEPAELAESLVSGDLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ ELK K   L           + V +E            + +SAL+NLGY +
Sbjct: 121 AERLVLELKEKIRKLGIAQPATSAAAAPVRQETRE---------DVLSALINLGYKE 168


>gi|302391487|ref|YP_003827307.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM
           5501]
 gi|302203564|gb|ADL12242.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM
           5501]
          Length = 201

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 18/208 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +    E  ++IDVQGV Y +  P    + L  IG+   ++  T++R+D+  L
Sbjct: 1   MIAHLTGELVLKEEARIVIDVQGVGYEVMIPTSVQNRLPNIGEDIKVYTHTYVREDRFVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   + + F  L  V  VG +VA+ +LS + A E   ++  ++ +V+ ++ GI  K 
Sbjct: 61  YGFLQLSELELFGKLLKVSKVGPKVAVSILSTLNAREFKLAVAKEDIEVLKEVKGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-----VNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A R++ E+KGK I L  +++++ S      + +E+            A+  L+NLGY   
Sbjct: 121 AQRLILEMKGK-IDLDRIMEEEESSQSVDGIEREE------------AVEGLMNLGYNIQ 167

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
           +A  AV    K     A   ++I+LAL+
Sbjct: 168 EAREAVTEACKGVDEAAGVEEVIKLALQ 195


>gi|320160780|ref|YP_004174004.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea
           thermophila UNI-1]
 gi|319994633|dbj|BAJ63404.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea
           thermophila UNI-1]
          Length = 191

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L E Y++I V  V   ++ P  TL    + G+   LF    +R+D + L
Sbjct: 1   MIAYVEGKVLELGETYLVIQVGAVGLQVFVP-STLRAKARAGETLVLFTYLVVREDLMAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R++F LL  V G+G R+A+ +LS ++   +  +I+ +  +V++++PG+  K 
Sbjct: 60  YGFETPLEREFFGLLLGVNGIGPRLAISILSVLSVDAIRRAILSEQPEVLSRVPGVGRKN 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+  L+GK  +      + M+ V++E              + AL +LGY   +A TA
Sbjct: 120 AQKIILSLQGKVTAEGLEGVRPMAEVDQE-------------VLEALTSLGYSVVEAQTA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V S+ K      D  + ++LALR  S 
Sbjct: 167 VQSIPKDAP--MDLEERLKLALRYFST 191


>gi|323486643|ref|ZP_08091964.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14163]
 gi|323400024|gb|EGA92401.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14163]
          Length = 203

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 108/209 (51%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D ++++   V   IY P+  L  L  +G+   ++    +R+D + L
Sbjct: 1   MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  V G+G + A+G+LS ++  +L  +I+  ++K I++ PG+  K 
Sbjct: 61  YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120

Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ +LK K  +   L+SV   D      E+  +  M      A +ALV LGY   +A
Sbjct: 121 AQRIILDLKDKVSAEEMLASVADTD------ERTSVPLMQEAGREAATALVALGYSNLEA 174

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + AV +V   E    D   ++R +L+ ++
Sbjct: 175 SKAVKNVQITED--MDAEAVLRASLKYLA 201


>gi|326201641|ref|ZP_08191512.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM
           2782]
 gi|325988241|gb|EGD49066.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM
           2782]
          Length = 201

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 30/218 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E    D ++++  G+ Y I+  + T++ LG+ G    +F   ++R+D   L
Sbjct: 1   MFAYIKGTVEVKNNDSIIVEAGGIGYRIFTALSTINNLGQTGTTVKIFTHYYVREDIAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F +L +V GVG + A+ ++S ++ +    +++ Q++K + +  GI MK+
Sbjct: 61  YGFGTMEELSMFEMLLAVSGVGPKAAISLISTLSPSRFALAVVSQDTKSLTKAQGIGMKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP------SFAIN------AISALV 168
           A RI+ ELK K              ++KEQ    S+P      SFA        A+SAL+
Sbjct: 121 AQRIILELKDK--------------ISKEQL-TASIPTAGSENSFAPGDSVLSEAVSALM 165

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            LGYG  +A+  +  + +   ++ D   +I+ AL+++S
Sbjct: 166 VLGYGSVEASGIITGIYEDGMSVED---LIKKALKSLS 200


>gi|148653226|ref|YP_001280319.1| Holliday junction DNA helicase RuvA [Psychrobacter sp. PRwf-1]
 gi|172048524|sp|A5WFC8|RUVA_PSYWF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148572310|gb|ABQ94369.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter sp.
           PRwf-1]
          Length = 210

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 12/213 (5%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +  L      L+   GV Y +  P+    C  ++    +L+   H+R+D   
Sbjct: 1   MIGLIEGRVCHLSAPVACLMTASGVGYEVELPLPDF-CQLQLEAMASLWTHLHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVGA++A+ ++S  +ATEL   I  +N   + ++PGI  K
Sbjct: 60  LYGFLHPTERDVFRQLIRVNGVGAKMALAMMSTFSATELKHCIDTENDAALTRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINA--ISALVNLGYGQD 175
            A R++ ELKGK       +Q DMS +   ++Q  I +     I A   SAL++LGY   
Sbjct: 120 TAQRLLIELKGK----FDHIQSDMSLLTEVEQQIGIAANSEGVILAEVESALISLGYRDK 175

Query: 176 QATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
           +A  A+ +  + +  + + D   +++L L+ +S
Sbjct: 176 EAQQAIKAARETDAGQQLVDTQSLLKLTLKQLS 208


>gi|120598878|ref|YP_963452.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1]
 gi|146293036|ref|YP_001183460.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32]
 gi|166200263|sp|A4Y6S8|RUVA_SHEPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200265|sp|A1RJQ3|RUVA_SHESW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120558971|gb|ABM24898.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1]
 gi|145564726|gb|ABP75661.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32]
 gi|319426434|gb|ADV54508.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens 200]
          Length = 205

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 111/207 (53%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y +  P+ +   L +I     ++    +R+D   L
Sbjct: 1   MIGRLRGVLVEKQAPEILMDVNGVGYELQMPLTSFYELPEIDHETVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPTPTVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K+     D   +I+ AL+++
Sbjct: 181 KSVSAAYKEG---MDSETLIKAALKSM 204


>gi|239995979|ref|ZP_04716503.1| Holliday junction DNA helicase motor protein [Alteromonas macleodii
           ATCC 27126]
          Length = 206

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 14/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+DV GV Y I+ P+ +   L  +G+   ++    +R+D   L
Sbjct: 1   MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R  F  L    GVG ++ + +LS ++A++ + S+  ++   +  +PGI  K 
Sbjct: 61  FGFADKMERGLFRELIKANGVGPKLGLAILSGMSASQFLASVQNEDVSALVSLPGIGKKT 120

Query: 121 ASRIMTELK------GKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++ ELK      GKA S++      D+   N     I ++      A SAL+ LGY 
Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSTNT----IVAVNDAREEAQSALIALGYK 176

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             QA+  V SV K+     +   +IR +L+A
Sbjct: 177 PAQASKLVDSVYKEG---MESEALIRESLKA 204


>gi|260173998|ref|ZP_05760410.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D2]
 gi|315922266|ref|ZP_07918506.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2]
 gi|313696141|gb|EFS32976.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2]
          Length = 200

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176
            A R++ +LK K      +    MS      A +   P+ A     A+SAL  LG+    
Sbjct: 119 TAQRVIVDLKDK------IKTMGMSAAGGASAGLLLQPANAEVQEEAVSALTMLGFAAAP 172

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           +   V+++LK+E + A   ++I+LAL+
Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198


>gi|269925207|ref|YP_003321830.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788867|gb|ACZ41008.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 192

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+IE    D +++ V GV   ++ P   +  +G+IGD   L     +R+D + L
Sbjct: 1   MIASIKGHIEYKLNDGLIVQVGGVGLRVFTPSSMVREIGEIGDEVYLHTHLMVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +    + F LL SV GVG   A+ +LS  +  E+  +I  +N++  + IP I  K+
Sbjct: 61  YGFSTREQLRLFELLISVTGVGPNHALNILSSASVEEIQTAIAQENAQFFSLIPRIGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELKGK +  S    Q +S  ++E              +SAL+ LGY   +A  A
Sbjct: 121 AARIILELKGK-VEPSGEAVQIISHKDEE-------------LVSALLALGYTLGEAQAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V S L  +K +  + + +RLAL   S 
Sbjct: 167 VRS-LPTDKELPMEEK-LRLALSYFST 191


>gi|160942099|ref|ZP_02089414.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434990|gb|EDP12757.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC
           BAA-613]
          Length = 209

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  + ED ++++   V   I+ P+  L  L  +G   T++    +R+D + L
Sbjct: 1   MISYVKGPLMAIEEDVIVVEAGHVGLAIHVPVSLLPELPGMGKEVTVYTYFQVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   DR  F  L  V G+G + A+G+LS +   +L  +I+ ++ K +A+ PGI  K 
Sbjct: 61  YGFLHSQDRDMFRQLLGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ +LK K IS+  V+               A +  +   A  A+ ALV LGY   +
Sbjct: 121 AQRLILDLKDK-ISMDDVLGNMAGGAGMGAADTGASVAGLVEAAKEAVQALVALGYTNTE 179

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ AV  V   +   ++D  +++ +L+ +S
Sbjct: 180 ASRAVKQVEVTDGMTSED--VLKASLKHLS 207


>gi|313901946|ref|ZP_07835363.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467792|gb|EFR63289.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus
           DSM 13965]
          Length = 221

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 102/192 (53%), Gaps = 11/192 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G + G + D   IDV GV + +    +T   L  +G+   L     +R+DQ  L
Sbjct: 1   MIAFLRGELAGFHGDEAWIDVGGVGFRVAVSRQTQRRLPPVGEPVRLLTRLVVREDQWSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V GVG RVA+ VLS +T  +L  +++LQ+  ++ ++PG+  K+
Sbjct: 61  YGFATADEQAAFDALVAVSGVGPRVALSVLSVLTPEDLRRAVVLQDPALLTRVPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQD-MSCVNKEQAHICSMPSFAI-------NAISALVNLGY 172
           A R++TEL+ +   L   + +D  +          ++PS          +A++AL  LGY
Sbjct: 121 ARRLLTELRDR---LGQPLAEDGAAGGPAATGTAGAVPSPGTGEASPRDDALAALEALGY 177

Query: 173 GQDQATTAVVSV 184
            + +A  A+ +V
Sbjct: 178 SRAEAEGALAAV 189


>gi|297559814|ref|YP_003678788.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844262|gb|ADH66282.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 206

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +IDV GV   + C    LS L  +G+  T+     +R++ + L
Sbjct: 1   MIAFLTGRVAARGAGTAVIDVGGVGMTVQCTPSALSRL-HVGETGTVATSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D ++  F  LQ+  GVG R+A+ +LS  + + L  ++  +++  + ++PGI  K 
Sbjct: 60  FGFADDDEKHLFEQLQTASGVGPRLALAMLSVHSPSSLRHAVSTEDTTALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--ISALVNLGYGQDQAT 178
           A RI+ EL+GK   L + V  D +    E A   S P+ A     +S LVNLG+    A 
Sbjct: 120 AQRIVLELRGK---LDAPVLTDGTLPGSEAAGTGSEPNGAWRGQVVSGLVNLGWSAKDAE 176

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A  +V  + ++  D + ++R ALR +S
Sbjct: 177 AAASAVAAEAEHTDDVAVLLRSALRRLS 204


>gi|220932069|ref|YP_002508977.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168]
 gi|254766964|sp|B8CXG3|RUVA_HALOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219993379|gb|ACL69982.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168]
          Length = 194

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 16/175 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KGN+    E+ V+++  GV Y +  P  +   L  +G+   LFV T++R+D + L
Sbjct: 1   MIGYLKGNVIWKAENKVILETGGVGYRVLVP--STVRLKPVGEKLELFVYTYVREDSLDL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L SV G+G R A+ +LS ++  + +E+I+ +   ++ Q+ GI  K 
Sbjct: 59  YGFKTMEERELFETLLSVSGIGPRAAINILSSLSYKKFIEAILTEKVSILKQVSGIGPKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQ 174
           A R++ ELKGK         +DMS   +E      +P      +S AL +LGY +
Sbjct: 119 AKRLILELKGKL--------KDMSGDFEE-----PLPDNRNTELSDALASLGYSE 160


>gi|238021644|ref|ZP_04602070.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147]
 gi|237866258|gb|EEP67300.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147]
          Length = 195

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +   +   + IDV G+ Y +   ++T   L  IGD   ++ +  +R+D   L
Sbjct: 1   MITHLTGKLAEKHPPQITIDVNGIGYELEVSMQTFYQLPNIGDSLHIYTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS  +A EL  +I  ++ K ++  PGI  K 
Sbjct: 61  FGFAGKAERATFRQLVKVSGIGAKTALGILSAFSADELAAAIAQEDIKRLSAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK    S       +            P  + + IS L+ LGY + +A  A
Sbjct: 121 AERMILELRGKLAPTSGEATGLFAP--------AVTPDASEDIISTLLALGYNEREARAA 172

Query: 181 VVSVLKKEKNIADDSQI---IRLALR 203
                   K I  D+ +   +RLAL+
Sbjct: 173 T-------KGIPADTDVGEGVRLALK 191


>gi|297183449|gb|ADI19581.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           Acidobacteria bacterium HF0770_27F21]
          Length = 192

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 19/208 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +YV++DV GV Y +Y P+ +   +G+IGD   L + TH+R D  +L
Sbjct: 1   MIAALRGLLHEKTPEYVIVDVGGVGYQVYLPLPSFYEIGEIGDEVLLRIHTHVRDDTFKL 60

Query: 61  FGFLSDLDRQ-WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF  DL +Q  F  L SV G+G ++A+ +LS +    L+ +I+  +   ++ IPG+  K
Sbjct: 61  YGF-KDLPQQRLFERLISVAGIGPKLAVTILSGMDTDLLIGAIVDSDIVRLSTIPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R+  ELK K   L  +V  D       Q           + +SAL NLGY    A  
Sbjct: 120 TAERMALELKEKVDDL-GLVSSDSGPRGIRQ-----------DVLSALENLGYRPRDAER 167

Query: 180 AVVSVLKKEKNIADDSQ-IIRLALRAIS 206
           A    L+K ++ AD  + +++  LR ++
Sbjct: 168 A----LEKVEDPADQFEALLKQTLRVLA 191


>gi|319786205|ref|YP_004145680.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464717|gb|ADV26449.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis
           11-1]
          Length = 196

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 10/173 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L ++G   +LF     ++D + L
Sbjct: 1   MIGRLRGTLVLKQPPWLVVDVNGVGYELEAPMSTFYDLPELGREVSLFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    +   +   + +IPGI  K 
Sbjct: 61  YGFLRESERRLFRDVQKVSGIGAKIALAVLSGVSVDEFARLVQAGDVTALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGY 172
           A R++ EL+ +A  L+              A + + P   + +A +AL  LGY
Sbjct: 121 AERMVVELRDRAADLAG---------GGAVAGMTAAPGDPMADAATALQQLGY 164


>gi|261379647|ref|ZP_05984220.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703]
 gi|284798132|gb|EFC53479.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703]
          Length = 194

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL ++I  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSTMNADELAQAIAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172
           A R++ EL+GK +S                 H  S   FA +A        I+ L+ LGY
Sbjct: 121 AERMVLELRGKLVS-----------------HTVSDGLFAPDAVADESQDIINTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  A   + K      +  + +RLAL+
Sbjct: 164 NEREAKAATKGIPKG----TEVGEGVRLALK 190


>gi|319903005|ref|YP_004162733.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes
           P 36-108]
 gi|319418036|gb|ADV45147.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes
           P 36-108]
          Length = 200

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 110/206 (53%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L     +ID  G+ Y +   + T + + GK    C L++   +R+D   
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYAAVQGK--KECKLYIYEAIREDAYI 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKSVKGIGLK 118

Query: 120 IASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ +LK   K  S+++    DM+ +      + +       A++AL  LG+ Q  +
Sbjct: 119 TAQRVIVDLKDKIKTDSVATGSAGDMTSL-----LMAANTQVQEEAVAALTMLGFAQAPS 173

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V+++LK+  N A   Q+I+LAL+
Sbjct: 174 QKVVLAILKENPN-APVEQVIKLALK 198


>gi|254805692|ref|YP_003083913.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
 gi|254669234|emb|CBA08082.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
          Length = 194

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +  L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVGTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V K      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190


>gi|84388519|ref|ZP_00991066.1| Holliday junction DNA helicase motor protein [Vibrio splendidus
           12B01]
 gi|84377068|gb|EAP93939.1| Holliday junction DNA helicase motor protein [Vibrio splendidus
           12B01]
          Length = 203

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 108/208 (51%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177
           A R++ E+K +   L      D+     + A + SMP+       A+SAL+ LGY   QA
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQA 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  V    K      Q+IR AL+++
Sbjct: 178 SKVVAQVA---KGGMTSEQLIREALKSM 202


>gi|229470526|sp|B4RTT9|RUVA_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 206

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+DV GV Y I+ P+ +   L  +G+   ++    +R+D   L
Sbjct: 1   MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R  F  L    GVG ++ + +LS ++A + + S+  ++   +A +PGI  K 
Sbjct: 61  FGFADKMERGLFRELIKANGVGPKLGLAILSGMSAGQFLASVQNEDVSALASLPGIGKKT 120

Query: 121 ASRIMTELK------GKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++ ELK      GKA S++      D+   N     I  +      A SAL+ LGY 
Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSPNT----IVEVNDAREEAQSALIALGYK 176

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             QA+  V SV  +     +   +IR AL+A
Sbjct: 177 PAQASKLVESVYSEG---MESEALIREALKA 204


>gi|86146483|ref|ZP_01064806.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222]
 gi|218709101|ref|YP_002416722.1| Holliday junction DNA helicase RuvA [Vibrio splendidus LGP32]
 gi|254767400|sp|B7VMI3|RUVA_VIBSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85835746|gb|EAQ53881.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222]
 gi|218322120|emb|CAV18233.1| Holliday junction DNA helicase ruvA [Vibrio splendidus LGP32]
          Length = 203

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177
           A R++ E+K +   L      D+     + A + SMP+       A+SAL+ LGY   QA
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQA 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  V    K+     Q+IR AL+++
Sbjct: 178 SKVVSQVA---KDGMTSEQLIREALKSM 202


>gi|19552871|ref|NP_600873.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390542|ref|YP_225944.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum
           ATCC 13032]
 gi|20455261|sp|Q9AE10|RUVA_CORGL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13346823|gb|AAK19839.1|AF331924_4 Holliday junction DNA-helicase RuvA [Corynebacterium glutamicum]
 gi|21324430|dbj|BAB99054.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325880|emb|CAF20043.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 206

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 116/208 (55%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV Y +     TLS L + G+   +     +R+D ++L
Sbjct: 1   MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ +  R+ F +LQ+V G+G R+A+   S ++  E+ ++I   ++K + ++PG+  ++
Sbjct: 60  YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKTLQRVPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQAT 178
           A R++ ELKGK  + ++ VV +    ++   A+I S     +  +S ALV LG+ + Q+ 
Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEGGEQISLPNANIAS--EVVVEQVSQALVGLGFSEKQSD 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV  VL  + ++ D S  +R AL  +S
Sbjct: 178 DAVSFVLAADPSL-DTSGALRAALAKLS 204


>gi|319638740|ref|ZP_07993499.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa
           C102]
 gi|317399981|gb|EFV80643.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa
           C102]
          Length = 194

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172
           A R++ EL+GK IS                 H  S   FA +A        I+ L+ LGY
Sbjct: 121 AERMVLELRGKLIS-----------------HTVSDGLFAPDAVADKSQDIINTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  A   + K      +  + +RLAL+
Sbjct: 164 NEREAKAATKGIPKG----TEVGEGVRLALK 190


>gi|237809451|ref|YP_002893891.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187]
 gi|259495658|sp|C4LBN1|RUVA_TOLAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|237501712|gb|ACQ94305.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187]
          Length = 206

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 12/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DV GV Y +  P+     L  +G   T+     +R+D   L
Sbjct: 1   MIGRLHGIIIEKSPPEILLDVGGVGYELQLPMTCFYELPAVGQEATIITHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ ++S ++A + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTRQERTLFRELLKANGVGPKLALAIMSGMSANQFVSCVEREDVSSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------NAISALVNLGYGQ 174
           A R++ E+K +   L   +  D+     + A +   PS A        A++AL+ LGY  
Sbjct: 121 AERLIVEMKDR---LKGWISHDLFTPYTDAAPVDHEPSLAPADTVESEAVAALLALGYKP 177

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            QA+  V  V+K E  + +   +IR ALR++
Sbjct: 178 QQASLVVSKVIKPEMTVEN---VIREALRSM 205


>gi|15676189|ref|NP_273321.1| Holliday junction DNA helicase motor protein [Neisseria
           meningitidis MC58]
 gi|20455266|sp|Q9K1A2|RUVA_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7225489|gb|AAF40719.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis MC58]
 gi|261391796|emb|CAX49251.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 8013]
 gi|316985194|gb|EFV64146.1| holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76]
 gi|325137090|gb|EGC59686.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M0579]
 gi|325139154|gb|EGC61700.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           ES14902]
 gi|325141101|gb|EGC63604.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis CU385]
 gi|325199468|gb|ADY94923.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76]
 gi|325202908|gb|ADY98362.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240149]
 gi|325207293|gb|ADZ02745.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           NZ-05/33]
          Length = 194

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V +      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190


>gi|241760730|ref|ZP_04758822.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114]
 gi|241318911|gb|EER55437.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114]
          Length = 194

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGEAVHLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL ++I  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172
           A R++ EL+GK +S                 H  S   FA +A        I+ L+ LGY
Sbjct: 121 AERMVLELRGKLVS-----------------HTVSDGLFAPDAVADESQDIINTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  A   + K      +  + +RLAL+
Sbjct: 164 NEREAKAAAKGIPKG----TEVGEGVRLALK 190


>gi|295091401|emb|CBK77508.1| Holliday junction DNA helicase subunit RuvA [Clostridium cf.
           saccharolyticum K10]
          Length = 248

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 5/187 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +I  I+G +    +   +++  G+ Y I+ P+  L  L  +G    ++    +R+D + L
Sbjct: 42  VISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSL 101

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  DR+ F  L  V G+G + A+G+L  +   +L  +I+  + K I++ PGI  K 
Sbjct: 102 YGFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKT 161

Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ +LK K  +     SV   D      E A + +    A  A+ ALV LGY   +A
Sbjct: 162 AQRIILDLKDKVSAEEMFPSVTASDGGAKAPEAASLTA--EAAREAVDALVALGYSNLEA 219

Query: 178 TTAVVSV 184
           + AV  V
Sbjct: 220 SKAVKQV 226


>gi|72162493|ref|YP_290150.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX]
 gi|90136068|sp|Q47N42|RUVA_THEFY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71916225|gb|AAZ56127.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX]
          Length = 202

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     +  +IDV GV   ++C    L+ L ++G+  T+     +R+D + L
Sbjct: 1   MIAFLSGRVVSRGAETAVIDVGGVGMTVHCTPAALARL-RVGEEATVATALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R  F  LQ+  GVG R+A+ +LS  T   L  +I  +++  + ++PGI  K 
Sbjct: 60  FGFADDDERDTFERLQTASGVGPRLALAMLSVHTPDALRRAIATEDTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK            +    EQ+   +  ++    +S LVNLG+   +A  A
Sbjct: 120 AQRIVLELKGKLGEPGG-----DTAATPEQSAAAAPRNWRAQVVSGLVNLGWSTREAEAA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V  +     D + ++R ALR +S
Sbjct: 175 ADAVAAEAGEQPDVAALLRSALRRLS 200


>gi|331697370|ref|YP_004333609.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952059|gb|AEA25756.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia
           dioxanivorans CB1190]
          Length = 199

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 108/204 (52%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQI 58
           MI  ++G +  +  D+ +++V GV + ++    TL  L  G+     TL V   +R+D +
Sbjct: 1   MISSVRGEVLSVGLDHAVVEVGGVGFAVFATPATLGGLRRGQEARLETLLV---VREDSL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF    +R+ F+LLQ+V GVG R+A+  L+ +    L  ++   ++  + +IPG+  
Sbjct: 58  TLYGFADAEERELFVLLQTVSGVGPRLALATLAVLDPQSLRRALADGDTATLTRIPGVGR 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ EL+ K ++ + V+  D+  +    AH   +       + ALV LG+    A 
Sbjct: 118 KSAERLVVELRDKVVAPAPVLAGDVRPLVTGNAHRDQV-------VEALVGLGFTARPAE 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202
            AV  +L  + + A+ + ++R AL
Sbjct: 171 AAVDGILAGDPD-AEPAALLRSAL 193


>gi|153003861|ref|YP_001378186.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5]
 gi|166229629|sp|A7H906|RUVA_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152027434|gb|ABS25202.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5]
          Length = 197

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D+V++DV GV Y+++    +L+ L   G   TL + T++RQD I L
Sbjct: 1   MIARLAGKVAEKGADHVVLDVGGVGYLVHLSAVSLAGLPPQGGDGTLRIFTNVRQDAIEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++PGI  K 
Sbjct: 61  YGFASEDEEAVFRALIDVKGVGPRAAQNILSGIDARELAQAVAGSDVARLTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A R++ ELK K           ++ + +      + P   +      ALVNLGY   Q  
Sbjct: 121 AERLVVELKEK-----------LALLARAAGPARAKPGAGVVEQLRQALVNLGYKPPQ-A 168

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            A    L+ E       +++R AL+
Sbjct: 169 DAAADALRDEAEGKKLDELLREALK 193


>gi|300705140|ref|YP_003746743.1| subunit A of ruvABC holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum CFBP2957]
 gi|299072804|emb|CBJ44159.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum CFBP2957]
          Length = 193

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+       A    M   A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGAAPGGPA----MSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    K+       S+ I+LAL+A+S
Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191


>gi|325135068|gb|EGC57696.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M13399]
          Length = 194

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +S L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHAVTDGLFAAAPAADETEDIVSTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V +      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190


>gi|145295781|ref|YP_001138602.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum R]
 gi|166230545|sp|A4QEN4|RUVA_CORGB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|140845701|dbj|BAF54700.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 206

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 116/208 (55%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV Y +     TLS L + G+   +     +R+D ++L
Sbjct: 1   MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ +  R+ F +LQ+V G+G R+A+   S ++  E+ ++I   ++K + ++PG+  ++
Sbjct: 60  YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKALQRVPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQAT 178
           A R++ ELKGK  + ++ VV +    ++   A+I S     +  +S ALV LG+ + Q+ 
Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEAGEQISLPNANIAS--EVVVEQVSQALVGLGFSEKQSD 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV  VL  + ++ D S  +R AL  +S
Sbjct: 178 DAVSFVLAADPSL-DTSGALRAALAKLS 204


>gi|307826389|ref|ZP_07656591.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum
           SV96]
 gi|307732566|gb|EFO03441.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum
           SV96]
          Length = 203

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +      ++++DV GV Y +  P+ T   L  IG   TL     +R+D   L
Sbjct: 1   MIGFLRGKLAHKSPPFLMLDVNGVGYEVEAPMTTFYDLPAIGSEITLHTHLVVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ DR  F  L  V GVG ++A+ +LS  +A E    I   +++ + ++PG+  K 
Sbjct: 61  FGFSTEADRSMFRTLIKVNGVGPKLALTILSGQSAEEFHRCIHNNDTQALVRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E++ +   L+ S      S    ++    + P     AISAL +LGY    A  
Sbjct: 121 AERLVIEMRDRLPDLTDSFDSGGTSVAGVDKIQPVNNPK--QEAISALCSLGYKPLDAGK 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V ++  + K+  D   IIRLAL+ 
Sbjct: 179 MVQNISAEGKSCED---IIRLALQG 200


>gi|308049716|ref|YP_003913282.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica
           DSM 9799]
 gi|307631906|gb|ADN76208.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica
           DSM 9799]
          Length = 207

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       V+++  GV Y +  P+ +   L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGLLVEKAAPEVVLECGGVGYEVQLPMTSFYQLPELGSEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L    GVG ++A+G+LS ++A + V+++  +N   + ++PG+  K 
Sbjct: 61  YGFASKEERALFRELIKTNGVGPKMALGILSGMSAEQFVDAVQAENITGLTKLPGVGKKT 120

Query: 121 ASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E    LK     L +     ++  N  +  + S P    +AI+ALV LGY    
Sbjct: 121 AERLVVEMRDRLKNFGGPLLTPYADRLAGTNPTENTLVSAPDPEEDAIAALVALGYKAPA 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  V     +     Q+IR AL+A+
Sbjct: 181 ASKVVAKVAAPGMS---SEQLIRDALKAM 206


>gi|167837835|ref|ZP_02464718.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis MSMB43]
          Length = 193

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPHTGEKVMLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGPL----AGAASPSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+L+L+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191


>gi|121535579|ref|ZP_01667386.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans
           Nor1]
 gi|121305819|gb|EAX46754.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans
           Nor1]
          Length = 201

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L  D+ ++DV GV Y ++ P      L   G    LF   H+R+D + L
Sbjct: 1   MIGYLRGTVVHLGVDHCILDVNGVGYRVFVPASGRQRL-VAGAQAALFTYLHVREDALLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F+LL  V G+G + A+ +LS ++      ++  +N  ++ +IPGI  K 
Sbjct: 60  YGFHTQDEYELFLLLMDVSGIGPKAALNILSAVSPEGFRLAVSQKNVSLLTKIPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K +  S     D        A   S    A  A+ A++ LGY   +    
Sbjct: 120 AERIILELKDK-VGTSGETGGDAGLAATGSA---SAIDQADEALQAMLALGYSHAE---- 171

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAIS 206
           V  VLKK ++ A    ++IRL LR  +
Sbjct: 172 VAPVLKKVRHEAQSVEELIRLVLREFT 198


>gi|124002681|ref|ZP_01687533.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134]
 gi|123991909|gb|EAY31296.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134]
          Length = 194

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 22/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      + +IDV GV Y I   + T + L   GD C L     +R+D   L
Sbjct: 1   MFAYISGKLAHKEPTFAVIDVHGVGYQINISLNTYTALPISGD-CKLHTWLQVREDAQNL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F+LL SV G+GA  A+ +LS ++ +E+  +I  ++ K I  I GI +K 
Sbjct: 60  YGFTELAEKKLFLLLISVSGIGANTALVMLSSMSVSEIQTAIASEDVKAIKSIKGIGLKT 119

Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ ELK K      +I+++   QQ  S V  E             A+ AL+ LGY +
Sbjct: 120 AQRVILELKDKVQKEVGSIAVTPATQQ--SAVKDE-------------AVMALITLGYAK 164

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALR 203
           + A   V  + K + N      +I+ AL+
Sbjct: 165 NVAEKNVAKIFKTKGNDVKVEDVIKEALK 193


>gi|126174263|ref|YP_001050412.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155]
 gi|153000824|ref|YP_001366505.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185]
 gi|160875532|ref|YP_001554848.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195]
 gi|217973219|ref|YP_002357970.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223]
 gi|304408864|ref|ZP_07390485.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183]
 gi|307302867|ref|ZP_07582622.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175]
 gi|166200260|sp|A3D480|RUVA_SHEB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200261|sp|A6WNQ3|RUVA_SHEB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045769|sp|A9L3H8|RUVA_SHEB9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767386|sp|B8EA74|RUVA_SHEB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|125997468|gb|ABN61543.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155]
 gi|151365442|gb|ABS08442.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185]
 gi|160861054|gb|ABX49588.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195]
 gi|217498354|gb|ACK46547.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223]
 gi|304352685|gb|EFM17082.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183]
 gi|306913227|gb|EFN43649.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175]
 gi|315267720|gb|ADT94573.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS678]
          Length = 205

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LIDV GV Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGVLVEKQAPEILIDVNGVGYELQMPLTSFYELPEVNHETMVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K+     D   +I+ AL+++
Sbjct: 181 KSVSAAYKEG---MDSETLIKAALKSM 204


>gi|167627795|ref|YP_001678295.1| Holliday junction DNA helicase RuvA [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597796|gb|ABZ87794.1| Holliday junction DNA helicase, subunit A [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 218

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 12/213 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG+I    +L+    +R+D  +L
Sbjct: 2   MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQVSLYTHFVVREDAQQL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + +D++ F  L  V G+GAR A+ +LS + +T L+  I  ++  ++A +PGI  K 
Sbjct: 62  YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMS----CVNKEQAHICSMPSFAINAI-----SALVNLG 171
           A R++ E+  K + +++ +    S     +N         P+   N+I      AL+ LG
Sbjct: 122 AERLVVEIYDKLLKMANEIYSQSSNTSASINANSVQHAQTPAAISNSIFSESVDALLALG 181

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           Y Q  A   +   + +    A   + IR AL+ 
Sbjct: 182 YKQKDAEKMIRGTIGESTTAA---EAIRKALQG 211


>gi|83749323|ref|ZP_00946320.1| RuvA [Ralstonia solanacearum UW551]
 gi|207742352|ref|YP_002258744.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           IPO1609]
 gi|83724001|gb|EAP71182.1| RuvA [Ralstonia solanacearum UW551]
 gi|206593742|emb|CAQ60669.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           IPO1609]
          Length = 193

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  V    A    M    ++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGAVPGGPA----MSDDTVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    K+       S+ I+LAL+A+S
Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191


>gi|285808235|gb|ADC35769.1| Holliday junction DNA helicase RuvA [uncultured bacterium 293]
          Length = 198

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I        +IDV GV Y +  P+ T   LG  GD  TL V TH+R+D I L
Sbjct: 1   MIAQLTGRIARKEPQEAVIDVGGVGYRVTIPVSTFYRLGVDGDTITLRVHTHLREDTIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L +V  VG ++A+ +LS I   EL++++   +   + +IPG+  K 
Sbjct: 61  FGFATASEHDLFEKLITVANVGPKLAVNILSGIETDELIQALRGGDLARLTRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     +      +  +              + +SALV+LGY + +A  A
Sbjct: 121 AERLVLELKDKMPKPGTAAAAPDAPPDGGAER--------EDVLSALVHLGYSRAEAERA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V     +E        ++R  LR++S
Sbjct: 173 VERA-TREGGSHRFEDLLRQVLRSLS 197


>gi|293371094|ref|ZP_06617631.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f]
 gi|292633752|gb|EFF52304.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f]
          Length = 200

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGELVELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176
            A R++ +LK K      +    MS      A +   P+ A     A+SAL  LG+    
Sbjct: 119 TAQRVIVDLKDK------IKTMGMSAAGGASAGLLLQPANAEVQEEAVSALTMLGFAAAP 172

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           +   V+++LK+E + A   ++I+LAL+
Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198


>gi|160882733|ref|ZP_02063736.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483]
 gi|156111903|gb|EDO13648.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483]
          Length = 200

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176
            A R++ +LK K      +    MS      A +   P+ A     A+SAL  LG+    
Sbjct: 119 TAQRVIVDLKDK------IKTMGMSAAGGVSAGLLLQPANAEVQEEAVSALTMLGFAAAP 172

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           +   V+++LK+E + A   ++I+LAL+
Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198


>gi|154707705|ref|YP_001423840.1| Holliday junction DNA helicase RuvA [Coxiella burnetii Dugway
           5J108-111]
 gi|189045750|sp|A9KF41|RUVA_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154356991|gb|ABS78453.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111]
          Length = 200

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G I      Y+L++V GV Y I  P+ T   L +      L+    +R+D   L
Sbjct: 1   MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQKEILLYTHLIVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+ F  L  V GVG ++A+ +LS I   E V  ++ QN   + +IPG+  K 
Sbjct: 61  YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E K     LS     D       ++   S      +AISAL+ LGY   +A  A
Sbjct: 121 AERLVIETKD---GLSRWHTNDTPSPEGLRS---SNTQPTQDAISALMALGYKPQEAKRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + ++ K + +      +IRLAL+
Sbjct: 175 IDAIQKPDLSA---ETLIRLALK 194


>gi|304396235|ref|ZP_07378117.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB]
 gi|304356604|gb|EFM20969.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB]
          Length = 204

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VL++  GV Y IY P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCFYELPELQHEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-------NAISALVNLGYG 173
           A R++ E+K +   +             + A   + PS           A++ALV+LGY 
Sbjct: 121 AERLVVEMKDRFKGMHG------DLFGGDSAFTLTTPSAEPETNDAESEAVAALVSLGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A+  +  V + +   AD   +IR ALRA
Sbjct: 175 PQEASRMISKVGRPD---ADCETLIREALRA 202


>gi|317480654|ref|ZP_07939741.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36]
 gi|316903161|gb|EFV25028.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36]
          Length = 200

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I  L     +ID  G+ Y +   + T + + GK    C L+V   +R+D   
Sbjct: 1   MIEYIRGGIAELSPATAVIDCNGLGYGVNISLNTYAAIQGK--KECKLYVYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177
            A R++ +LK K I   SV   +   +      + S  +  +   A++AL  LG+ Q  +
Sbjct: 119 TAQRVIVDLKDK-IKTGSVATGNAGTI----GTLVSAANVQVQEEAVAALTMLGFAQAPS 173

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V+++LK+E + A   Q+I+LAL+
Sbjct: 174 QKVVLAILKEEPS-APVEQVIKLALK 198


>gi|313679904|ref|YP_004057643.1| holliday junction DNA helicase subunit ruva [Oceanithermus
           profundus DSM 14977]
 gi|313152619|gb|ADR36470.1| Holliday junction DNA helicase subunit RuvA [Oceanithermus
           profundus DSM 14977]
          Length = 195

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +    ED  ++ + G+ + ++CP  TL  L ++G+   L     +R+D + L
Sbjct: 1   MVRFLEGVVLEATEDRAIVSLHGLGFEVFCPTGTLGRL-RVGETARLHTRLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF      +WF LL  V GVG RVA+G+LS + A  L +++   + K++   PG+  K+
Sbjct: 60  YGFHDPRLLEWFDLLVGVSGVGPRVALGLLSALPADLLGQAVTGDDPKLLTAAPGVGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +       +   ++ +    A I +    A  A +AL+ LG+ + Q   A
Sbjct: 120 AERIVLELKTR-------LPDHLAGLAPSAAPIEN--PAAGEAAAALITLGFRETQ-VHA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           VV  L  ++  A   ++IRLALR +
Sbjct: 170 VVQKLAAKQPEAGAEELIRLALREL 194


>gi|253574942|ref|ZP_04852282.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845988|gb|EES73996.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 206

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  L  +YV++DVQGV Y ++CP    +   K  +  T++   H+R+D I L
Sbjct: 1   MIDFLRGQIAHLETEYVVLDVQGVGYRVFCP-NPYAFAAKGQETVTIYTHHHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G RVA+G+LS  +   +V +I  +N   + ++PGI  K 
Sbjct: 60  FGFPTREEQKLFRKLIEVSGIGPRVALGILSGGSPDHVVAAIHQENVSFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A R++ +LK K   +   +   +     E       P +   A   L  LGY
Sbjct: 120 AQRMILDLKDKLEGVGGTLFDPVPADVGETLGDDGNPGWP-EAREGLKALGY 170


>gi|317491787|ref|ZP_07950222.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920221|gb|EFV41545.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 204

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPEVLLEANGVGYEVHMPMTCFYELPELGQEVIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEREEVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L+  +  + S +    A     P+  I+    A+SAL+ LGY   +
Sbjct: 121 AERLVVEMKDRFKGLTGDLFNNHSDLPVPAA---KKPASEIDAEGEAVSALIALGYKPQE 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A+  +  + K +   AD   +IR ALRA
Sbjct: 178 ASRMISKIAKPD---ADSETLIRDALRA 202


>gi|145640257|ref|ZP_01795841.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
 gi|145274843|gb|EDK14705.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.4-21]
          Length = 181

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 13/184 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAHAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173
           A R++ ELKGK      V Q D      E  HI           S +  AISAL+ LGY 
Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174

Query: 174 QDQA 177
             +A
Sbjct: 175 PAEA 178


>gi|239978432|ref|ZP_04700956.1| Holliday junction DNA helicase RuvA [Streptomyces albus J1074]
 gi|291450328|ref|ZP_06589718.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074]
 gi|291353277|gb|EFE80179.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074]
          Length = 208

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V G+   + C   TLS L ++G+   L     +R+D + L
Sbjct: 1   MIASVSGTVAALAPDSAVVEVGGIGMAVQCTPDTLSGL-RVGEQARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQSMLAVHHPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +  +     Q     V    A       ++    +ALV LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGAPRGATQAARPAVASGPA------PWSEQLHTALVGLGYAPREADDA 173

Query: 181 VVSVLKK-EKNIADD-----SQIIRLALRAIS 206
           V +V  + E  +A+       Q++R AL++++
Sbjct: 174 VAAVTPQAEAALAEGGRPAVPQLLRAALQSLN 205


>gi|299148028|ref|ZP_07041091.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23]
 gi|298514211|gb|EFI38097.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23]
          Length = 200

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176
            A R++ +LK K      +    MS      A +   P+ A     A+SAL  LG+    
Sbjct: 119 TAQRVIVDLKDK------IKIMGMSAAGGASAGLLLQPANAEVQEEAVSALTMLGFAAAP 172

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           +   V+++LK+E + A   ++I+LAL+
Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198


>gi|220928772|ref|YP_002505681.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum
           H10]
 gi|254766954|sp|B8I1A3|RUVA_CLOCE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219999100|gb|ACL75701.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum
           H10]
          Length = 199

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 115/205 (56%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E    D ++++  G+ Y I+  + T++ +G+ G    ++   ++R+D   L
Sbjct: 1   MFAYIKGTVEEKNNDSIIVEAGGIGYRIFTALSTINNMGQNGTTVKIYTHYYVREDIAVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F +L +V GVG + A+ ++S ++ +    +++ Q++K + + PGI MK+
Sbjct: 61  YGFGTVEELTMFEMLLTVSGVGPKAAISMISTLSPSRFYLAVVSQDTKSLTKAPGIGMKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K IS   +    +   + E   +    S    A+SAL+ LGYG  +A++ 
Sbjct: 121 AQRIILDLKDK-ISKEQLTSS-IPMTSPENNEVTG-DSVLSEAVSALMVLGYGSAEASST 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   EK I+ + ++++ AL+++
Sbjct: 178 ISGIY--EKGISVE-ELVKKALKSL 199


>gi|167764704|ref|ZP_02436825.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC
           43183]
 gi|167697373|gb|EDS13952.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC
           43183]
          Length = 200

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L      ID  G+ Y +   + T + + GK    C L++   +R+D   
Sbjct: 1   MIEYIKGEIAELSPASATIDCNGLGYAVNISLNTYAAIQGK--KSCKLYIYEAIREDAYI 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AIN------AISALVNLGY 172
            A R++ +LK K            +C     A   + P+F A N      A++AL  LG+
Sbjct: 119 TAQRVIVDLKDKI----------KTCGMASGAVDITGPAFTAANAQVQEEAVAALTMLGF 168

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            Q  +   V ++LK++ N A   Q+I+LAL+
Sbjct: 169 AQAPSQKVVTAILKEDAN-APVEQVIKLALK 198


>gi|42523918|ref|NP_969298.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus
           HD100]
 gi|81616890|sp|Q6MKB7|RUVA_BDEBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|39576125|emb|CAE80291.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus
           HD100]
          Length = 196

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 18/208 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MIG ++G I  +  D  LIDV GV Y I+    TL  L   +G+   +++ TH+R+D ++
Sbjct: 1   MIGYLRGKIIEVMNDSALIDVSGVGYEIHASSNTLGDLQALLGNDIIVWIHTHVREDALQ 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    ++  F+ L  V GVG ++A+ +LS     ++ E I   N+K ++ +P +  K
Sbjct: 61  LFGFHDKEEKNLFLSLLKVNGVGPKMALSILSGGRPAQIHEMIEAGNAKALSGLPKVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYGQDQAT 178
            A +I+  LKGK +S+            +E   +    S A   I SAL+NLGY + Q  
Sbjct: 121 TAEQIILTLKGKLVSI------------EEGGVVAKAKSVAHTQITSALLNLGY-KSQLV 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
              VS L  +  + D    IR   + +S
Sbjct: 168 DQFVSSLPADIAVEDG---IRKGFQTLS 192


>gi|78188435|ref|YP_378773.1| Holliday junction DNA helicase RuvA [Chlorobium chlorochromatii
           CaD3]
 gi|90134727|sp|Q3ATE5|RUVA_CHLCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78170634|gb|ABB27730.1| Holliday junction DNA helicase subunit RuvA [Chlorobium
           chlorochromatii CaD3]
          Length = 204

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  +I++QGV Y       T   L   G    LF   ++R+D + L
Sbjct: 1   MYAYFRGTLISFTADEAIIELQGVAYHFLISATTSRQLPNSGSEVQLFAHLYVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +RQ F LL    GVG ++A+ VLS +   E+ ++I+    + +  I G+  K 
Sbjct: 61  YGFYSEEERQLFRLLLQASGVGPKLALSVLSGLPVHEVHDAIVSNIPERLYGISGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + LS V    +      + H  +      +AI+ALV LG+ +  A   
Sbjct: 121 AARIILELRDKILKLSPV----LPTATARRPHNAAQ-QLRDDAITALVTLGFPRAAAQKT 175

Query: 181 VVSVLKKEKN 190
           V S+L +  N
Sbjct: 176 VTSLLDENSN 185


>gi|167766364|ref|ZP_02438417.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1]
 gi|167711955|gb|EDS22534.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1]
          Length = 190

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 6/189 (3%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++D  G+ Y +  P+R  S   KIG    ++   H+R+D + LFGFLS  +++ F LL 
Sbjct: 6   VVVDNHGIGYQMMVPMRGES-FPKIGQEIKIYTHMHVREDDVSLFGFLSKEEKEAFELLI 64

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            V G+G +V + VLS ++  EL  ++I ++ K I++ PG+  K A +++ ELK K +S  
Sbjct: 65  GVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKGAKKLILELKDK-LSFE 123

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
             +++D            S  S  I  I  LV+LGY + +A  AV  V +  K++  + +
Sbjct: 124 E-LEEDGVGAEIFDTSADSSDSVMIT-IEGLVSLGYSKSEAAIAVNKV-EDAKDLTPE-E 179

Query: 197 IIRLALRAI 205
           +++ AL+ I
Sbjct: 180 LLKKALKNI 188


>gi|167564063|ref|ZP_02356979.1| Holliday junction DNA helicase motor protein [Burkholderia
           oklahomensis EO147]
 gi|167571207|ref|ZP_02364081.1| Holliday junction DNA helicase motor protein [Burkholderia
           oklahomensis C6786]
          Length = 193

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L    +   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTSEKVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++ALV LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGPL----AGAASPSDHATDILNALVALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+L+L+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191


>gi|58425878|gb|AAW74915.1| holliday junction binding protein, DNA helicase [Xanthomonas oryzae
           pv. oryzae KACC10331]
          Length = 212

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 77/137 (56%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 19  MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 79  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 138

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ EL+ +A   SS
Sbjct: 139 AERMVVELRDRAADFSS 155


>gi|160896673|ref|YP_001562255.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1]
 gi|229560027|sp|A9BUG7|RUVA_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160362257|gb|ABX33870.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1]
          Length = 190

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G   +L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCGGVGYEVQVPMSTFYNLPASGAKVSLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++ LQ    + ++PGI  K 
Sbjct: 61  YGFGTHSERQAFRELIKITGIGPRMALSVLSGMSVEDLAQAVTLQEVGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK I   +  Q     VN +Q  I          + AL+ LGY    A  A
Sbjct: 121 AERLLLELKGK-IGADTGAQS--LFVNNDQNDI----------VQALMALGYSDKDAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LKK       ++ I+LAL+A++
Sbjct: 168 ----LKKLPPDVGVTEGIKLALKALA 189


>gi|84623202|ref|YP_450574.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|161899002|ref|YP_200300.2| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188577435|ref|YP_001914364.1| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|90146231|sp|Q5H2A6|RUVA_XANOR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123725563|sp|Q2P577|RUVA_XANOM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560139|sp|B2STK2|RUVA_XANOP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84367142|dbj|BAE68300.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|188521887|gb|ACD59832.1| holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 194

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 77/137 (56%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ EL+ +A   SS
Sbjct: 121 AERMVVELRDRAADFSS 137


>gi|300770096|ref|ZP_07079975.1| crossover junction ATP-dependent DNA helicase RuvA
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762572|gb|EFK59389.1| crossover junction ATP-dependent DNA helicase RuvA
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 194

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 11/188 (5%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +V++DV G+ Y I+  + T S + K  + C LF+   +R+D   LFGF ++ +RQ F  L
Sbjct: 16  HVVLDVNGIGYYIHISLNTFSLI-KDQENCKLFISFQVREDSQTLFGFANEGERQLFEHL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV G+G      +LS IT  E+  +II     VI +I GI  K A R++ EL+ K    
Sbjct: 75  ISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKTAQRLILELQDK---- 130

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
             + +Q    +    A   S+P     A+SAL+ LG+ ++QA   + +++  E +++ + 
Sbjct: 131 --LKKQGPDALISPVASKQSVPE---EALSALIMLGFVKNQAEKVLNTIINTEPDLSVE- 184

Query: 196 QIIRLALR 203
           Q+I+LAL+
Sbjct: 185 QLIKLALK 192


>gi|331269238|ref|YP_004395730.1| Holliday junction DNA helicase RuvA [Clostridium botulinum
           BKT015925]
 gi|329125788|gb|AEB75733.1| Holliday junction DNA helicase RuvA [Clostridium botulinum
           BKT015925]
          Length = 200

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 99/185 (53%), Gaps = 5/185 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    L +DY++++   + Y IY    T++ +  I +   +++E  +R+D I +
Sbjct: 1   MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F LL ++ GVG++ A+ +LS      L +SI+ ++ K++ + PGI  KI
Sbjct: 61  YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVCSLKKSILSEDYKMLTKAPGIGKKI 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI  ELK K   +    +++D    N  +            A+ AL+ LG+ Q +A  
Sbjct: 121 AQRITLELKDKIEKIYEDSLEEDNDIDNLSKNSTRKYDE----ALEALIALGFSQKEAEK 176

Query: 180 AVVSV 184
           A+  +
Sbjct: 177 ALKDI 181


>gi|294628363|ref|ZP_06706923.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14]
 gi|292831696|gb|EFF90045.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14]
          Length = 201

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 15/202 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +I+V GV   + C   TLS L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGAVAALAPDTAVIEVGGVGMAVQCTPNTLSTL-RIGQPAKLHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +++ ELK +  A   +  V   ++   ++Q H            +AL+ LGY   +A 
Sbjct: 120 AQKLLLELKDRLGAPVGAPAVGAPVTQGWRDQLH------------AALIGLGYATREAD 167

Query: 179 TAVVSVLKKEKNIADDSQIIRL 200
            AV +V  + +      Q+ +L
Sbjct: 168 EAVAAVTPQAEAAGGAPQVGQL 189


>gi|304436498|ref|ZP_07396472.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370544|gb|EFM24195.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 199

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG    +  DY L+DV  V Y ++   +T + +    +   L++ T++R+D I L
Sbjct: 1   MIGFLKGKATHITSDYCLLDVHDVGYRVFISNQTRAHISPSAE-VMLYIHTNVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F+ L  + G+G +VA G+LS  T  +    +  ++ K I ++PGI  K 
Sbjct: 60  YGFFSREEYDLFLHLIGISGIGPKVAQGILSSATVNDFYRMVQQKDVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+ ELK K   +S++ + + D +   K +       S    A  AL+ LG+ QD   
Sbjct: 120 AERILLELKDKLSDVSVADLPEGDNNVGTKTEN------SMIAEATEALLTLGF-QD--- 169

Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202
           + +  V ++  +  +  ++IR AL
Sbjct: 170 SEIQRVFRQRHSCQNTEELIRYAL 193


>gi|21232455|ref|NP_638372.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767461|ref|YP_242223.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990567|ref|YP_001902577.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|325921870|ref|ZP_08183684.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC
           19865]
 gi|24212373|sp|Q8P6E5|RUVA_XANCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81306559|sp|Q4UXM0|RUVA_XANC8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560138|sp|B0RPY4|RUVA_XANCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|21114237|gb|AAM42296.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572793|gb|AAY48203.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167732327|emb|CAP50519.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris]
 gi|325547651|gb|EGD18691.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC
           19865]
          Length = 194

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 77/137 (56%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ EL+ +A   SS
Sbjct: 121 AERMVVELRDRAADFSS 137


>gi|313895598|ref|ZP_07829154.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975724|gb|EFR41183.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 198

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     D+ L+DV  V Y ++   +T + + + G+   L++ TH+R+D I L
Sbjct: 1   MIGFLRGTVVHSAVDHCLLDVHDVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L  + G+G + A  +LS +T  +    I  +N K I ++PGI  K 
Sbjct: 60  YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKNVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +     D S V  + +      S    A  AL++LG+ Q++  T 
Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAVVSDVS-----DSMLAEATEALMSLGFQQNEIQT- 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
              V + + +     +++R AL
Sbjct: 174 ---VFQGKTDYQSTEELVRYAL 192


>gi|255320811|ref|ZP_05361986.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SK82]
 gi|262379413|ref|ZP_06072569.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SH164]
 gi|255302188|gb|EET81430.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SK82]
 gi|262298870|gb|EEY86783.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SH164]
          Length = 200

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 110/205 (53%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + +IPG+  K 
Sbjct: 60  YGFSNAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDLNTLVKIPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+       + + + Q  I + P     A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKTLAQAATTSSTALPQIQ-FIANSP--IAEAEAALQSLGYKPQEAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V   + + ++ + +IR AL+++
Sbjct: 177 VAAV---KGDFSESADLIRAALKSM 198


>gi|257095744|ref|YP_003169385.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048268|gb|ACV37456.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 191

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       V++DV G+ Y +  P+ T   L   G+  +L     +R+D   L
Sbjct: 1   MIGRLSGILLEKNPPQVVLDVHGIGYELDVPMSTFYNLPANGEQVSLLTHFVVREDGQFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +R  F  L  + GVGAR+A+ VLS ++ ++L + +  Q    + ++PGI  K 
Sbjct: 61  YGFASEPERFAFRQLLKISGVGARLALSVLSGLSVSDLAQVVARQEVGRLTKVPGIGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   L+  +   ++  +  ++ I          ++AL+ LGY  D+   A
Sbjct: 121 AERLLLELKGK---LADALPASIAPADGARSDI----------LNALLALGY-NDREAAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            + +L  E   +D    IR AL+ +S
Sbjct: 167 AMKLLPDETTTSDG---IRQALKLLS 189


>gi|86134376|ref|ZP_01052958.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp.
           MED152]
 gi|85821239|gb|EAQ42386.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp.
           MED152]
          Length = 193

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V+ID  GV Y+++  + T S L +  +   L+    +R D   L
Sbjct: 1   MITQVRGRLVEKSPTEVVIDCNGVGYLLHISLNTFSGLPE-DENVVLYTHLSIRDDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R+ F LL SV GVG  +A  + S +T+ E+ ++I  +N  VI  + GI  K 
Sbjct: 60  FGFINKTEREVFKLLISVSGVGPSIARTMCSSMTSDEIQQAIASENVAVIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +   ++ +  +S  N  +            A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIVDLKDKILKTFNIDEVSVSASNTNKDE----------ALSALEVLGFNRKQSDKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VLK   + A    II+LAL+ +
Sbjct: 170 VNTVLKANPD-ASVENIIKLALKNL 193


>gi|166712990|ref|ZP_02244197.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
 gi|289661899|ref|ZP_06483480.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669612|ref|ZP_06490687.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 194

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 77/137 (56%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ EL+ +A   SS
Sbjct: 121 AERMVVELRDRAADFSS 137


>gi|147669064|ref|YP_001213882.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. BAV1]
 gi|146270012|gb|ABQ17004.1| Holliday junction DNA helicase subunit RuvA [Dehalococcoides sp.
           BAV1]
          Length = 194

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 12/184 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  + P  + + +G +G    +F   H+R+D + L
Sbjct: 1   MISSLNGILEASGKDWAVINVSGVGFRCHMPATSSALIGGLGQRVRVFTHLHVREDALSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPGI  K 
Sbjct: 61  FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           +SRI+ ELK            D    N E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 SSRIILELK------------DKIAKNWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168

Query: 181 VVSV 184
           + S+
Sbjct: 169 ISSL 172


>gi|264680422|ref|YP_003280332.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2]
 gi|262210938|gb|ACY35036.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2]
          Length = 191

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G    L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  FGFGTARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  + +    Q +   N +Q  I            AL+ LGY   +A+ A
Sbjct: 121 AERLLLELKGKIGADTGA--QSLFANNNDQNDIQ----------QALMALGYSDKEASAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LKK       S+ I+LAL+A++
Sbjct: 169 ----LKKLPPDVGVSEGIKLALKALT 190


>gi|311739557|ref|ZP_07713392.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305373|gb|EFQ81441.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 205

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 4/202 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +ID  GV Y      +TL  L + G+  T+     +++D + L
Sbjct: 1   MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGGEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K  + +         V+   A      +   +   AL+ LG+  D+    
Sbjct: 120 AQRLALELKDKVAAFAPSEAAAAGSVDTAVAPAGG--AVVESVTEALIGLGF-TDKGARP 176

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           VV     +   AD S ++R AL
Sbjct: 177 VVESAYADNPDADTSSLLRAAL 198


>gi|218768952|ref|YP_002343464.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis Z2491]
 gi|20455265|sp|Q9JSM5|RUVA_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121052960|emb|CAM09314.1| Holliday junction DNA helicase [Neisseria meningitidis Z2491]
 gi|254671573|emb|CBA09225.1| holliday junction DNA helicase [Neisseria meningitidis alpha153]
 gi|319411250|emb|CBY91657.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis WUE
           2594]
          Length = 194

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172
           A R++ EL+GK +                 AH  +   FA         + +  L+ LGY
Sbjct: 121 AERMVLELRGKLV-----------------AHAVTDGLFAAAPAADETEDIVGTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  AV  V +      D  + +RLAL+
Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190


>gi|332184195|gb|AEE26449.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida 3523]
          Length = 216

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQISLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAI-----SALVNLG 171
           A R++ E+  K + +++ +    S         QA     P+   N+I      AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQSSGTKVANLDSQAPQVPTPTVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +      A   ++IR AL+
Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209


>gi|225077350|ref|ZP_03720549.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens
           NRL30031/H210]
 gi|224951342|gb|EEG32551.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens
           NRL30031/H210]
          Length = 194

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 29/211 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+ID+ GV Y     ++T   L  IG+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDINGVGYEADVSMQTFYNLPPIGETVHLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL ++I  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172
           A R++ EL+GK +S                 H  S   FA  A        I+ L+ LGY
Sbjct: 121 AERMVLELRGKLVS-----------------HTVSDGLFAPAAVADESQDIINTLLALGY 163

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            + +A  A   + K      +  + +RLAL+
Sbjct: 164 NEREAKAATKGIPKG----TEVGEGVRLALK 190


>gi|83719212|ref|YP_441795.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
 gi|167580615|ref|ZP_02373489.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis TXDOH]
 gi|167618721|ref|ZP_02387352.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis Bt4]
 gi|257137961|ref|ZP_05586223.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
 gi|123753836|sp|Q2SZ54|RUVA_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83653037|gb|ABC37100.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
          Length = 193

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPRILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGPL----AGAASPSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+L+L+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191


>gi|119356229|ref|YP_910873.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides
           DSM 266]
 gi|166230538|sp|A1BDH2|RUVA_CHLPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119353578|gb|ABL64449.1| Holliday junction DNA helicase subunit RuvA [Chlorobium
           phaeobacteroides DSM 266]
          Length = 200

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG++     +  +IDV GV Y +     T   L   G    L+    +R+D ++L
Sbjct: 1   MFAYFKGSLVTALPEEAVIDVSGVAYRMLISATTFRQLPDEGSQVLLYAHLSVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +RQ F LL    GVG ++A+ VLS +   E+ E+I+    + +  + G+  K 
Sbjct: 61  YGFFKEEERQLFRLLLLTSGVGPKLALAVLSGLQVPEVHEAIMANEPERLYGVSGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A+RI+ EL+ K + L  V            A   +MPS  +  +A+ ALV LG+ +  A 
Sbjct: 121 AARIILELRDKILKLPLVTP---------AAGKAAMPSHHVKDDAVHALVTLGFSRLLAQ 171

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A VS L +EK      ++I+ AL  I
Sbjct: 172 KA-VSALLEEKPEQSVEEVIKYALATI 197


>gi|312797266|ref|YP_004030188.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI
           454]
 gi|312169041|emb|CBW76044.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI
           454]
          Length = 193

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   GD  TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPGTGDKITLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +RQ F  L  + G+GAR+A+ VLS ++ ++L +++  Q++  + ++PGI  K 
Sbjct: 61  YGFLTQQERQTFRELLKISGIGARMALAVLSGMSVSDLAQTVTQQDTARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+       +     P      + AL++LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADIGAAASAASSSDHAPDI----LHALLSLGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V      ++D    I+LAL+A+S
Sbjct: 170 IKNV-PAGTGVSDG---IKLALKALS 191


>gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072547|gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 24/210 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D QGV Y +  P+ T   L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + GVGAR A+ +LS ++  +L +++ LQ +  + ++PGI  K 
Sbjct: 61  FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ELKGK      +++ VV  D S                 + ++AL+ LGY   +
Sbjct: 121 AERLLLELKGKLGADLGAVAGVVHSDASA----------------DILNALLALGYSDKE 164

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           AT A+  V  K+  ++D    I+LAL+A+S
Sbjct: 165 ATLAMKQV-PKDSTVSDG---IKLALKALS 190


>gi|167586148|ref|ZP_02378536.1| Holliday junction DNA helicase motor protein [Burkholderia
           ubonensis Bu]
          Length = 193

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLSPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AERLLL-------ELKGKLGADLGTL----AGAASPSDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|329957833|ref|ZP_08298308.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056]
 gi|328522710|gb|EGF49819.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056]
          Length = 200

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L     +ID  G+ Y     + T + + GK    C L++   +R+D   
Sbjct: 1   MIEYIKGEIAELSPASAIIDCNGLGYAANISLNTYAAIQGK--KSCKLYIYEAIREDAYI 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ +LK K I    +V           A   +       A++AL  LG+ Q  +  
Sbjct: 119 TAQRVIVDLKDK-IKTGGMVSGAADITGP--AFTAANAQVQEEAVAALTMLGFAQAPSQK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V+++LK++ N A   Q+I+LAL+
Sbjct: 176 VVMAILKEDAN-APVEQVIKLALK 198


>gi|323692211|ref|ZP_08106454.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14673]
 gi|323503785|gb|EGB19604.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14673]
          Length = 203

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D ++++   V   IY P+  L  L  +G+   ++    +R+D + L
Sbjct: 1   MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  V G+G + A+G+LS ++  +L  +I+  ++K I++ PG+  K 
Sbjct: 61  YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120

Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ +LK K  +   L+SV         +E+  +  M      A +ALV LGY   +A
Sbjct: 121 AQRIILDLKEKVSAEEMLASVAD------TEERTSVPLMQEAGREAATALVALGYSNLEA 174

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + AV +V   E    D   ++R +L+ ++
Sbjct: 175 SKAVKNVQITED--MDAEAVLRASLKYLA 201


>gi|212690798|ref|ZP_03298926.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855]
 gi|237708184|ref|ZP_04538665.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA]
 gi|212666675|gb|EEB27247.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855]
 gi|229457737|gb|EEO63458.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA]
          Length = 197

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  +    V++D  G+ Y I   + T S +    +   L++   +R+D   L
Sbjct: 1   MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAIQNQSN-TKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K      +    +  VN E     +       AISAL  LG+ Q  A+  
Sbjct: 120 AQRIIVDLKDK------IATSGVETVNSEMFANPANTEIHDEAISALTMLGFAQ-AASQK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           VV+ + KE+  A   ++I+LAL+
Sbjct: 173 VVAAILKEEPAAPVEKVIKLALK 195


>gi|149910565|ref|ZP_01899204.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36]
 gi|149806408|gb|EDM66381.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36]
          Length = 206

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETH--MRQDQ 57
           MIG+++G +       +L+DV GV Y I  P   +SC  ++GD    + V TH  +R+D 
Sbjct: 1   MIGRLRGTLLEKQPPEILLDVNGVGYEIKLP---MSCFYELGDVDKEVIVYTHFVVREDA 57

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF + ++R  F  L  V GVG ++ + +LS +TA +    +   +   + ++PG+ 
Sbjct: 58  QLLYGFNNKMERLMFRELIKVNGVGPKLGLAILSGMTANQFAHCVEHDDINSLIKLPGVG 117

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI----SALVNLGYG 173
            K A R++ E++ +   L + V QD+     ++A +    + A NAI     AL+ LGY 
Sbjct: 118 KKTAERLLVEMRDR---LKNWVTQDLFTPEADKAQLQGYGNTASNAIEEAEEALIGLGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             Q    +  V +   +     +IIRL+LRA
Sbjct: 175 PAQVAKMIKQVAQPSMSC---EEIIRLSLRA 202


>gi|17545220|ref|NP_518622.1| Holliday junction DNA helicase motor protein [Ralstonia
           solanacearum GMI1000]
 gi|20455245|sp|Q8Y235|RUVA_RALSO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17427511|emb|CAD14029.1| probable holliday junction dna helicase ruva protein [Ralstonia
           solanacearum GMI1000]
          Length = 193

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVALLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  V    A    +   A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGTVPGGPA----VSDDAVDVLNALLALGYSDKEAAQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    K+       S+ I+LAL+A+S
Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191


>gi|293603639|ref|ZP_06686060.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter
           piechaudii ATCC 43553]
 gi|292818075|gb|EFF77135.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter
           piechaudii ATCC 43553]
          Length = 190

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       + +DV G+ Y I   + TL  L + G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTICVDVGGLGYDIDVSMTTLYSLPETGARVTLYTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++  +L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFGTAGERSAFRELIKVSGIGARTALSVLSGMSVADLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK       +  D+   +       + P    + ++AL+ LGY + ++   
Sbjct: 121 AERLLLEMRGK-------LGADIGAASH------ATPDHQSDILNALLALGYSEKES--- 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +S LK        S  I+ AL+A++
Sbjct: 165 -LSALKGLPEGVGVSDGIKQALKALA 189


>gi|77163677|ref|YP_342202.1| DNA recombination protein, RuvA [Nitrosococcus oceani ATCC 19707]
 gi|254435109|ref|ZP_05048616.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27]
 gi|90135436|sp|Q3JES4|RUVA_NITOC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76881991|gb|ABA56672.1| Holliday junction DNA helicase subunit RuvA [Nitrosococcus oceani
           ATCC 19707]
 gi|207088220|gb|EDZ65492.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27]
          Length = 199

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 4/181 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L+DVQGV Y +  P+ T   L  +G    L+    +R D   L
Sbjct: 1   MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F S+ +R  F  L  V GVGA++ +G+LS I A      +   ++  + ++PG+  K 
Sbjct: 61  YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ + + +    +  ++ +  ++    S P     A+SALV LGY  ++A+ A
Sbjct: 121 AERLIVEMRDRLLDMP---ESGVAGMRPDRVD-GSAPGTVAEAVSALVALGYKPNEASRA 176

Query: 181 V 181
           V
Sbjct: 177 V 177


>gi|21243875|ref|NP_643457.1| Holliday junction DNA helicase RuvA [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626863|ref|ZP_06705455.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294665404|ref|ZP_06730692.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|24212375|sp|Q8PHV0|RUVA_XANAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|21109477|gb|AAM37993.1| holliday junction binding protein DNA helicase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|292598877|gb|EFF43022.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292604815|gb|EFF48178.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 194

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--PSFAINAISALVNLGYGQDQAT 178
           A R++ EL+ +A   SS             A I     P     A  AL  LGY   +A 
Sbjct: 121 AERMVVELRDRAADFSS------------GAPITGQLGPDAVSEATVALQQLGYKPAEAA 168

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
                   +   +A    +IR AL+A
Sbjct: 169 RMARDAGAEGDEVA---TVIRKALQA 191


>gi|325267123|ref|ZP_08133791.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella
           denitrificans ATCC 33394]
 gi|324981361|gb|EGC17005.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella
           denitrificans ATCC 33394]
          Length = 194

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 19/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       ++IDVQGV Y +   ++T   L   G+   L+ +  +R+D   L
Sbjct: 1   MIGRLHGILAEKQPPQIVIDVQGVGYEVEVSMQTFYTLPAAGEAVRLYTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS +++ EL +++  ++ K ++ +PGI  K 
Sbjct: 61  FGFADAGERATFRQLIKVSGIGAKTALGILSALSSDELAQAVAQEDVKRLSSVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK    S+      +   ++            + +  L+ LGY + +A  A
Sbjct: 121 AERMILELRGKLAGSSAADTALFAAAAQDSRQ---------DVVQTLMALGYSEKEAQAA 171

Query: 181 VVSVLKKEKNIADDSQI---IRLALR 203
                   K++ DD ++   +R AL+
Sbjct: 172 C-------KSLPDDVEVGEGVRQALK 190


>gi|188533631|ref|YP_001907428.1| Holliday junction DNA helicase RuvA [Erwinia tasmaniensis Et1/99]
 gi|229560030|sp|B2VJ94|RUVA_ERWT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188028673|emb|CAO96535.1| Holliday junction ATP-dependent DNA helicase [Erwinia tasmaniensis
           Et1/99]
          Length = 204

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y +  P+     L  I     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPVVLIEASGVGYEVQMPMTCFYELPDIQHEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+K +   +      D+   +   A    MP    N     A++AL  LGY   
Sbjct: 121 AERLVVEMKDRFKGMHG----DLFASDAPFALTSEMPKETANDAEGEAVAALTALGYKPQ 176

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A+  +V V K +   AD   +IR ALRA
Sbjct: 177 EASRMIVKVGKPD---ADCETLIREALRA 202


>gi|257055537|ref|YP_003133369.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora
           viridis DSM 43017]
 gi|256585409|gb|ACU96542.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora
           viridis DSM 43017]
          Length = 199

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  D+ +I+V GV + +     TL  L + G    L+    +R+D + L
Sbjct: 1   MISSIRGEVLAVGLDHAVIEVGGVGFTVQATPTTLGTL-RRGTEARLYTTLMVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     R+ F LLQ+V G+G R+AM  L+ +   +L  ++   +   + Q+PGI  K 
Sbjct: 60  FGFADVESRELFGLLQTVSGIGPRLAMAALAVLEPEKLRRALADGDITTLTQVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K       V   M              +   + ++ALV LG+   QA  A
Sbjct: 120 AERLIIELRDK-------VSAPMGGEPAPDEGTTVGSAVRADVVAALVGLGFSAKQAEQA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  V  +  N  D SQ++R AL
Sbjct: 173 VDKVSGEVPN--DTSQVLRAAL 192


>gi|219849021|ref|YP_002463454.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM
           9485]
 gi|254766951|sp|B8GCH4|RUVA_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219543280|gb|ACL25018.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM
           9485]
          Length = 195

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I+ +  DY++++  G+ ++IY P  TLS  G +G    L     +R+D + L
Sbjct: 1   MIASIRGVIQSIGNDYLIVETGGIGFLIYAPRSTLSAAGAVGSDIFLHTILIVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +  R  F  L  V GVG ++A+ +LS  T  E+   I   +   +A++PGI  K 
Sbjct: 61  YGFSDNAQRSLFEQLIGVSGVGPKLALSLLSSGTPDEVRSMIAGGDVARLARVPGIGKKT 120

Query: 121 ASRIMTELKGKA--ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+ EL+GK     L++     +S +++E + I             LV+LGY   +A 
Sbjct: 121 AERIVLELRGKIDFRQLAASGSTSVSALDRELSEI-------------LVSLGYSAAEAA 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            A+ S+        ++   +RLALR
Sbjct: 168 AAIASLPSDAPPTLEER--LRLALR 190


>gi|190575569|ref|YP_001973414.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia
           K279a]
 gi|254522833|ref|ZP_05134888.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14]
 gi|229560132|sp|B2FRN6|RUVA_STRMK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190013491|emb|CAQ47126.1| putative Holliday junction DNA helicase [Stenotrophomonas
           maltophilia K279a]
 gi|219720424|gb|EED38949.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14]
          Length = 197

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 78/137 (56%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L ++G   TL+     ++D + L
Sbjct: 1   MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    +   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ EL+ +A    +
Sbjct: 121 AERMVLELRDRAAQFGA 137


>gi|329961622|ref|ZP_08299681.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057]
 gi|328531614|gb|EGF58448.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057]
          Length = 200

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I  L     +ID  G+ Y +   + T + + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGGIAELSPATAVIDCNGLGYAVNISLNTYAAIQGK--KECKLYIYEAIREDAYI 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++ +ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELVNVISTENANLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177
            A R++ +LK K I   S    D   +      + +  +  I   A++AL  LG+ Q  +
Sbjct: 119 TAQRVIVDLKDK-IKTGSAAAGDTGTI----GGLLTAANAQIQEEAVAALTMLGFAQAPS 173

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V+ +LK++ + A   Q+I+LAL+
Sbjct: 174 QKVVLGILKEDPD-ASVEQVIKLALK 198


>gi|241662010|ref|YP_002980370.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D]
 gi|240864037|gb|ACS61698.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D]
          Length = 193

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  V    A    +   A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGAVPGGPA----VSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    K+       S+ I+LAL+A+S
Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191


>gi|284039351|ref|YP_003389281.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74]
 gi|283818644|gb|ADB40482.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74]
          Length = 198

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V+IDV GV Y ++  ++T + L   GD   LF+    R+D   L
Sbjct: 1   MIAYLDGTLSHKEATHVIIDVHGVGYSVHISLQTYAVLPGGGDRIKLFIHHLFREDSQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F+ L  V GVG   A+G+LS +   +L  +I+ +N + +  I GI  K 
Sbjct: 61  YGFANADEKSLFLDLIGVSGVGPNTALGMLSAMQPGDLRLAILGENVRAVQAIKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K +  + VV    S   +  A+     S A     ALV LG+ +  A  +
Sbjct: 121 AQRIILELRDK-MKRAGVVPDGPSYRQQAAANPVREESLA-----ALVALGFPKPTAEKS 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   LK +  ++ +  +IR ALR
Sbjct: 175 VDDALKADPALSVED-VIRRALR 196


>gi|78048836|ref|YP_365011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325929365|ref|ZP_08190495.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans
           91-118]
 gi|90146217|sp|Q3BQF2|RUVA_XANC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78037266|emb|CAJ25011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325540277|gb|EGD11889.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans
           91-118]
          Length = 194

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--PSFAINAISALVNLGYGQDQAT 178
           A R++ EL+ +A   SS             A I     P     A  AL  LGY   +A 
Sbjct: 121 AERMVVELRDRAADFSS------------GAPITGQLGPDAVSEATVALQQLGYKPAEAA 168

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
                   +   +A    +IR AL+A
Sbjct: 169 RMARDAGAEGDEVA---TVIRKALQA 191


>gi|237723715|ref|ZP_04554196.1| holliday junction DNA helicase ruvA [Bacteroides sp. D4]
 gi|265756839|ref|ZP_06090827.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA]
 gi|229437926|gb|EEO48003.1| holliday junction DNA helicase ruvA [Bacteroides dorei 5_1_36/D4]
 gi|263233625|gb|EEZ19245.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA]
          Length = 197

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  +    V++D  G+ Y I   + T S +    +   L++   +R+D   L
Sbjct: 1   MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAIQNQSN-TKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K      +    +  VN E     +       A+SAL  LG+ Q  A+  
Sbjct: 120 AQRIIVDLKDK------IATSGVETVNSEMFANPANTEIHDEAVSALTMLGFAQ-AASQK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           VV+ + KE+  A   ++I+LAL+
Sbjct: 173 VVAAILKEEPAAPVEKVIKLALK 195


>gi|19704439|ref|NP_604001.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296328207|ref|ZP_06870738.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22001978|sp|Q8REJ7|RUVA_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|19714701|gb|AAL95300.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296154719|gb|EFG95505.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 194

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 1/145 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+   L++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKLYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145
           A  I+ +LKGK  +L+   ++ +S 
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM 144


>gi|262384145|ref|ZP_06077281.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B]
 gi|262295043|gb|EEY82975.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B]
          Length = 196

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T S  G       +++   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R+ F+LL SV GVG   A  +LS +  +ELV+ I  +N   +  + GI +K 
Sbjct: 60  FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   + S+        N  +A I S  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPMESMAG------NLPEASI-SNGAVTEEAVAALVMLGFQKAASQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++LK    +A + Q+I+ ALR
Sbjct: 173 VSAILKGSPTLAVE-QVIKTALR 194


>gi|260890744|ref|ZP_05902007.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254]
 gi|260859622|gb|EEX74122.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254]
          Length = 211

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 78/129 (60%), Gaps = 2/129 (1%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           DYV +D+ G+ Y +Y  ++T   L  IG+   L+V T++++D I L+GF +  +R+ F  
Sbjct: 15  DYVALDINGLAYKVYVSLKTFEKLDNIGNDEKLYVYTNVKEDDISLYGFKTQNERELFKA 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG--KA 132
           L S+ GVG ++ + +LS     E+++ +    SK+  ++PG+ +K A +I+ +LK   K 
Sbjct: 75  LISISGVGPKLGIAILSTFNTREIIDIVNENESKIFTRVPGLGIKKAQKIILDLKDKVKK 134

Query: 133 ISLSSVVQQ 141
           + L+  +++
Sbjct: 135 LDLTETIEE 143


>gi|294789135|ref|ZP_06754374.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC
           29453]
 gi|294482876|gb|EFG30564.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC
           29453]
          Length = 195

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       ++IDV GV Y +   ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLRGTLIDKTPPQIVIDVNGVGYEVDVSMQTFYALPALGETVQLYTQLAVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS ++  +L  +I  ++ K ++  P +  K 
Sbjct: 61  FGFADLAERATFRQLVKVSGIGAKTALGILSALSPDDLAAAIASEDVKKLSSAPSVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +++S  ++ D+        H  +    + + +S L+ LGY + ++  A
Sbjct: 121 AERMILELRGK-LTVSGSLKDDL-------LHATASVDNSEDVVSTLLALGYNEKESRLA 172

Query: 181 VVSVLKKEKNIADD---SQIIRLALR 203
           V       K +A D   S+ ++LAL+
Sbjct: 173 V-------KGLAADVDVSEGVKLALK 191


>gi|124268420|ref|YP_001022424.1| Holliday junction DNA helicase RuvA [Methylibium petroleiphilum
           PM1]
 gi|166230565|sp|A2SKV0|RUVA_METPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|124261195|gb|ABM96189.1| holliday junction DNA helicase [Methylibium petroleiphilum PM1]
          Length = 192

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 19/208 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+G++ G +       VLIDV GV Y +  P+ +   L  IG+  TL     +R+D   L
Sbjct: 1   MLGRLTGLLAEKSPPQVLIDVGGVGYEVDVPMSSFFNLPAIGEKVTLLTHFVVREDAQVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F +L  + GVG R A+ +LS +T  +L +++  Q++  + ++PGI  K 
Sbjct: 61  FGFLTAPERETFRMLIKISGVGPRTALSILSGLTVGDLAQAVTAQDASRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--ISALVNLGYGQDQAT 178
           A R++         L   +  D+         I   P+    A  + AL+ LGY + +A 
Sbjct: 121 AERLLL-------ELKGKLGADLGPA------IGGKPASDAQADILQALIALGYSEREAQ 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A V  L  E  ++D    I+LAL+A++
Sbjct: 168 AA-VKALPAEVGVSDG---IKLALKALA 191


>gi|71279553|ref|YP_268842.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H]
 gi|90134812|sp|Q483C5|RUVA_COLP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71145293|gb|AAZ25766.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H]
          Length = 211

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 112/213 (52%), Gaps = 11/213 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+  GV Y +  P+ ++  L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGMLVEKNSPEILIECAGVGYEVTMPMTSIYALPELEQQATIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R+ F LL  V GVG ++A+ +LS ++A + V  +   +   I +IPG+  K 
Sbjct: 61  YGFANKVERKLFRLLIKVNGVGPKLALAILSNMSADQFVSCVRHDDISAIVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAI----NAISALVNLGY 172
           A R++ E++ +     +    +V  D     +  A +    +F      +AI+AL++LGY
Sbjct: 121 AERLLIEMRDRLKDWQAQQIHLVSDDGVIPEQLSAELSQETTFVNDNKGDAINALLSLGY 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            Q QA  AV SV  +  +      IIR AL+++
Sbjct: 181 KQVQADKAVKSVYNRGMS---SENIIRDALKSM 210


>gi|87118957|ref|ZP_01074855.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121]
 gi|86165348|gb|EAQ66615.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121]
          Length = 199

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DV GV Y +   + T   L  IG+  TL+    +++D   L
Sbjct: 1   MIGRLVGYLVEKVPPELMLDVNGVGYELTASMTTFYELPAIGEKVTLYTHFQVKEDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA--QIPGISM 118
           + F    +R  F +L  V GVG ++A+ VLS +++ EL+ ++  Q+S V A  +IPG+  
Sbjct: 61  YAFKQKDERALFRILIKVNGVGPKMALSVLSSMSSDELIANV--QDSDVTALTRIPGVGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ EL+ K   L    +QD+    +    + + P     A +ALV+LGY   +A 
Sbjct: 119 KTAERLIIELRDK---LGQAAKQDLFATPEVLRQVQADPR--QEAEAALVSLGYKPQEAA 173

Query: 179 TAVVSVLKKEKNIADDS--QIIRLALR 203
            A+  V      ++ DS  Q+I+ AL+
Sbjct: 174 KAIAKV-----PVSSDSSEQVIKSALK 195


>gi|325528762|gb|EGD05824.1| Holliday junction DNA helicase RuvA [Burkholderia sp. TJI49]
          Length = 193

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL + + +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQVVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +  E     S    A + ++ALV LGY + +   A
Sbjct: 121 AERLLL-------ELKGKLGADLGALAGE----ASPSDHAADILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|313673192|ref|YP_004051303.1| holliday junction DNA helicase ruva [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939948|gb|ADR19140.1| Holliday junction DNA helicase RuvA [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 192

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 19/184 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT-LFVETH--MRQDQ 57
           MI K++G +     +Y+++DV G+ + I     +L+C   + D  + L + T+  +R+D 
Sbjct: 1   MIAKLRGKLHEKKPNYIILDVNGIFFEISI---SLNCFTSLPDLNSELIISTYTIVREDG 57

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I ++GFL+D +++ F+LL SV  VG ++A+ +LS     +L  +I  ++  +IA  PG+ 
Sbjct: 58  ISIYGFLNDDEKRLFLLLNSVSKVGPKLALSILSTCEIVKLKSAIKNRDINLIATAPGVG 117

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A RI+ EL+ K      V+  D   ++ +              ISALVNLGY +  A
Sbjct: 118 KKTAERIILELRDKIEEFEVVMDADTGGLDDD-------------IISALVNLGYKKVDA 164

Query: 178 TTAV 181
            +A+
Sbjct: 165 LSAL 168


>gi|183599000|ref|ZP_02960493.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827]
 gi|188021215|gb|EDU59255.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827]
          Length = 205

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +     +  + S       A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQHSDIKLPDVNVKVSSRADIEAEAATALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K +   +D   +IR ALRA
Sbjct: 181 RMVSKVAKPD---SDCESLIRDALRA 203


>gi|154482944|ref|ZP_02025392.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC
           27560]
 gi|149736228|gb|EDM52114.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC
           27560]
          Length = 197

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +E + +D V++D  G+ Y I+    TL  +G IG+   ++    +R+D ++L
Sbjct: 1   MISYISGVVEEIEKDKVVVDNNGIGYGIFASQSTLEQIG-IGEQVKIYTYFSVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  + Q F LL  V GVG +  + +LS      L  +++  ++K I++ PGI  K 
Sbjct: 60  YGFLSRQELQLFKLLIGVSGVGPKGGLAILSTCPGDSLSMAVLADDAKAISKAPGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK K      +  +DM         +        +A+ AL  LGY Q  A  A
Sbjct: 120 AQKIIIELKDK------IDIEDMIAGETISKPMTKASGVVGDAVEALTALGYSQTMAYQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+  +  +  D  +I++ AL+ I
Sbjct: 174 IKSI--ENVDGMDVEEILKKALKNI 196


>gi|331007236|ref|ZP_08330443.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC1989]
 gi|330418952|gb|EGG93411.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC1989]
          Length = 207

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +      Y+LIDV GV Y +  P+ +   L   G+   L     + ++  +L
Sbjct: 1   MIGRLSGVLIEKQAPYLLIDVAGVGYEVQAPMTSFYPLPVTGEKVILHTHLSVSENAHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F +  +R+ F  L  V GVG ++A+ +LS +   E V+ +   N   + ++PG+  K 
Sbjct: 61  FAFYTLEERRLFRTLIKVSGVGPKMALAILSGMPVNEFVQCVKGDNVAALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-----SALVNLGYGQD 175
           A R++ E+K +   L+       + VN E A     P    NA+     SAL+ LGY + 
Sbjct: 121 AERLIIEVKDRLGDLAEWESGGAANVNAESA----TPELLSNAVVADAESALIALGY-KP 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
                ++S  +K +++     +IRLAL++
Sbjct: 176 TVAAQMISAAQKIESVTSSEALIRLALKS 204


>gi|187927480|ref|YP_001897967.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J]
 gi|309779818|ref|ZP_07674573.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA]
 gi|229560120|sp|B2UFL2|RUVA_RALPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187724370|gb|ACD25535.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J]
 gi|308921395|gb|EFP67037.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA]
          Length = 193

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  V    A    +   A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGTVPGGPA----VSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    K+       S+ I+LAL+A+S
Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191


>gi|157962184|ref|YP_001502218.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC
           700345]
 gi|189045771|sp|A8H546|RUVA_SHEPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157847184|gb|ABV87683.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC
           700345]
          Length = 205

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 104/188 (55%), Gaps = 6/188 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VL+DV GV Y +  P+ +   L ++G    ++    +R+D   L
Sbjct: 1   MIGRIRGILIEKQAPEVLVDVSGVGYELQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL    GVG ++ + +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFVSKQERSLFRLLIKANGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E++ K  SL  +SV   ++ M   N + + + +  +   +AI+AL++LGY   Q
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYKASEVVN--TAEEDAIAALLSLGYKPAQ 178

Query: 177 ATTAVVSV 184
           A+ AV SV
Sbjct: 179 ASKAVSSV 186


>gi|325264009|ref|ZP_08130742.1| holliday junction DNA helicase RuvA [Clostridium sp. D5]
 gi|324031047|gb|EGB92329.1| holliday junction DNA helicase RuvA [Clostridium sp. D5]
          Length = 207

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 106/203 (52%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  + V++DV GV Y IY P + +  L + G    +    ++R+D ++L
Sbjct: 8   MISYIRGELAAVETEKVIVDVGGVGYGIYMPGQAMGLLPQPGHEVKIHTYLNVREDAMQL 67

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS+++  +L  +++  + K I+  PGI  K 
Sbjct: 68  FGFLTRDDLEVFKLVIGVSGIGPKGGLNILSQLSPDDLRFAVMAGDVKAISAAPGIGKKT 127

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K +S+  V+    +      A   +       A+ ALV LGYG  ++  A
Sbjct: 128 AEKLIIELKDK-LSIEDVLTH--AAEGSAAAVPVNNGGIQSEAVQALVALGYGSTESLRA 184

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V      + D   +++ AL+
Sbjct: 185 VKQVELDNPTVED---VLKEALK 204


>gi|194366898|ref|YP_002029508.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia
           R551-3]
 gi|229560131|sp|B4ST34|RUVA_STRM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194349702|gb|ACF52825.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia
           R551-3]
          Length = 197

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 78/137 (56%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L ++G   TL+     ++D + L
Sbjct: 1   MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    +   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ EL+ +A    +
Sbjct: 121 AERMVLELRDRAAQFGA 137


>gi|209695355|ref|YP_002263284.1| Holliday junction DNA helicase RuvA [Aliivibrio salmonicida
           LFI1238]
 gi|226698724|sp|B6EGJ3|RUVA_ALISL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|208009307|emb|CAQ79573.1| holliday junction ATP-dependent DNA helicase RuvA [Aliivibrio
           salmonicida LFI1238]
          Length = 206

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GN+       +LI+V G+ Y +  P+     L  IG    +++   +R+D   L
Sbjct: 1   MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPPIGTEAIIYIHYVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTKKERALFREVIKANGVGPKLGLAILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+K +     +       D + ++     I S  S    A+SAL++LGY   QA
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPADTTSMDDASDLISSPQSAQDEAVSALISLGYKPVQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  V K +        +IR +L+++
Sbjct: 181 SKMVSQVAKPDMT---SESLIRESLKSM 205


>gi|193213411|ref|YP_001999364.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB
           8327]
 gi|229560016|sp|B3QQG1|RUVA_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193086888|gb|ACF12164.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB
           8327]
          Length = 204

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +     +  +++V G+ Y ++    T S L   G    L+   H+R+D  +L
Sbjct: 1   MFAFLRGELVTASREEAVVEVSGIGYRLHISSGTSSRLPVPGSPVFLYTHYHVREDLQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL + + Q F LL S+ GVG ++A+ VLS ++  E+ E+I+    + +  I G+  K 
Sbjct: 61  FGFLDEEELQLFRLLLSISGVGPKLAIAVLSGLSVGEIQEAIVSNRPETLFGISGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K +     +Q   S      + + S      +A++AL  LG+ +  A  A
Sbjct: 121 AARIILELRDKILK----IQPTSSAKAGAPSAVLSATQLIDDAVAALTTLGFPKASAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL+    ++ + +++R +L A+
Sbjct: 177 VSKVLETTPGLSVE-ELVRTSLAAM 200


>gi|313677422|ref|YP_004055418.1| holliday junction DNA helicase ruva [Marivirga tractuosa DSM 4126]
 gi|312944120|gb|ADR23310.1| Holliday junction DNA helicase RuvA [Marivirga tractuosa DSM 4126]
          Length = 197

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG+I  L   +++I+V GV Y +  P+ T     K      +    H+++D   L
Sbjct: 1   MISYLKGSIIELEPTHLIIEVGGVGYHVIIPMSTYDAF-KSQKEVKVLTHFHVKEDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F+ L  + G+G   A+G+LS +   E+  SI+ +N K I  I GI  K 
Sbjct: 60  YGFYLPEERTVFLDLIGISGIGPSTAIGMLSAMNPNEIKSSIVAENVKQIQSIKGIGGKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +        +++       Q+   S  S    A+SAL+NLG+ ++ A   
Sbjct: 120 AQRVILELKDR-------YKKEGLITESTQSSGVSNNSLRNEALSALINLGFAKNSAEKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +L+  K      Q+I+ AL++
Sbjct: 173 IDKILQANKENITLEQLIKQALKS 196


>gi|167750454|ref|ZP_02422581.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702]
 gi|167656605|gb|EDS00735.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702]
          Length = 199

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +ID  GV Y       TLS L KIG+   L     +R+D + L
Sbjct: 1   MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +   F +L SV GVG + A+ +LS +T       +   + K +   PGI  K 
Sbjct: 60  FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFA-INAISALVNLGYGQDQAT 178
           A RI+ ELK K      V +QD++   K  A  I + PS     A+SAL+ LGY   +AT
Sbjct: 120 AERIVLELKDK------VSKQDVAAGVKGSAVPIVAAPSNTYAEAVSALMVLGYSNGEAT 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +A+  +       A   ++IR  L+ ++
Sbjct: 174 SALSGLDPS----APSDELIRAGLKKLA 197


>gi|221632653|ref|YP_002521874.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM
           5159]
 gi|254767395|sp|B9KYT2|RUVA_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221156321|gb|ACM05448.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM
           5159]
          Length = 191

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 15/180 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       VL+DVQGV + +     TL  LG+ GD  +L     +R+D++ L
Sbjct: 1   MIRGVRGTLVAKRSGEVLVDVQGVTFRVQTSATTLQELGEPGDLVSLVTHLIVREDELAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+ L +V GVG R A+ +LS      L E I  +  + +A+ PGI  K 
Sbjct: 61  YGFATEAELELFLSLLAVSGVGPRGALNLLSLAAPDRLTEWIRGERIEELARAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL+G+  +L+ V  Q    +++E              ++AL  LGY   +A  A
Sbjct: 121 ASRIVLELRGRLPALTEV--QAGEPIDQE-------------LVAALQALGYTAQEARQA 165


>gi|109899252|ref|YP_662507.1| Holliday junction DNA helicase RuvA [Pseudoalteromonas atlantica
           T6c]
 gi|109701533|gb|ABG41453.1| Holliday junction DNA helicase subunit RuvA [Pseudoalteromonas
           atlantica T6c]
          Length = 209

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VLIDV GV Y I  P+ +   L ++G   +++    +R+D   L
Sbjct: 3   MIGRIRGTVVEKQPPEVLIDVAGVGYEIQIPMTSFYQLPEVGAEASVYTHFVVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L    GVG ++A+ +LS ++    ++ +  ++   + ++PG+  K 
Sbjct: 63  FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQHFMQCVAHEDITALVKLPGVGKKT 122

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E++   K +SL      D +    N  +    +       A+SAL+ LGY   Q
Sbjct: 123 AERLVIEMRDRFKKLSLEQSASDDFALQGNNSIENTFVTSSDAKEEALSALIALGYKAPQ 182

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + SV  K+       ++IR ALRA+
Sbjct: 183 ASKVINSVYVKD---ITSEELIREALRAM 208


>gi|332290325|ref|YP_004421177.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179]
 gi|330433221|gb|AEC18280.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179]
          Length = 202

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +       +L++V G+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGHLRGILLEKSPPEILLEVNGIGYEVLLPMTSFYHLPEVNMEAAIYTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ +E   +I  +    + +IPG+  K 
Sbjct: 61  FGFYHKQDRTLFRELIKTNGVGPKLALAILSAMSVSEFSYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A R++ ELKGK  +       ++Q    S ++ E+       S   +AISALV LGY   
Sbjct: 121 AERLIVELKGKFKAYQHDDFFIEQTTTQSGIDTEKV------SATDDAISALVALGYKPA 174

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A   V  V K E    D  Q+IR AL++
Sbjct: 175 EAEKMVKRVAKPE---WDSEQLIREALKS 200


>gi|238926806|ref|ZP_04658566.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
 gi|238885338|gb|EEQ48976.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
          Length = 199

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG    +  DY L+DV  V Y ++   +T + +    +   L++ T++R+D I L
Sbjct: 1   MIGFLKGKATHITSDYCLLDVHDVGYRVFISDQTRAHISPNAE-VMLYIHTNVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F+LL  + G+G +VA G+LS  T  +    +  ++ K I ++PGI  K 
Sbjct: 60  YGFFSREEYDLFLLLIGISGIGPKVAQGILSSATVNDFYCMVQQKDVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ ELK K   LS V  +D+    N   A I +       A  AL+ LG+ QD   +
Sbjct: 120 AERILLELKDK---LSDVSVEDLPEGDNNVGAEIEN--GMVAEATEALLTLGF-QD---S 170

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
            +  V +++ +  +  ++IR AL
Sbjct: 171 EIQRVFRQKHSCQNTEELIRYAL 193


>gi|319941758|ref|ZP_08016080.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis
           3_1_45B]
 gi|319804691|gb|EFW01558.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis
           3_1_45B]
          Length = 193

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 20/209 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +LIDV GV Y +  P+ T   L ++G   TL     +R+D   L
Sbjct: 1   MIGRLHGKLLEKNPPQILIDVSGVGYEVDVPMSTFCNLPEVGGELTLHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG ++A+ +LS IT  +L +++    + ++ ++PGI  K 
Sbjct: 61  YGFATLAERAVFRALIKISGVGPKIALALLSGITVDQLKDAVDRGETGLLTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK     +         +  +A +           +AL+ LGY + +A  A
Sbjct: 121 AERLVLELKGKLAGTGAATAAAAVPTSGARADVA----------AALIALGYSEREAAAA 170

Query: 181 VVSVLKKEKNIADDSQI---IRLALRAIS 206
                   K + +D  +   +RLAL++++
Sbjct: 171 T-------KKLPEDCTVNDGLRLALKSLT 192


>gi|188590168|ref|YP_001920351.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251779255|ref|ZP_04822175.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|229560021|sp|B2V337|RUVA_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188500449|gb|ACD53585.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243083570|gb|EES49460.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 198

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 7/185 (3%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG   G+ +DY++I+  G+ Y I+    T+S +   G+   +++E  +R+D I L+GF 
Sbjct: 5   IKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKIYIEQIVREDFIGLYGFE 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S  +   F LL S+ GVGA+ A+ +LS      L  +II  + K + +  GI  KIA RI
Sbjct: 65  SLEELDMFKLLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGTGIGKKIAGRI 124

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVS 183
           + ELK K  S      + ++C++ E   +    S A++ A+SAL++LGY + +A   +  
Sbjct: 125 ILELKDKLKS-----DELLNCID-EFDDVTQDNSLALSEALSALISLGYTEKEAEKVLKD 178

Query: 184 VLKKE 188
           V K E
Sbjct: 179 VDKSE 183


>gi|117618993|ref|YP_858104.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166229627|sp|A0KPA3|RUVA_AERHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117560400|gb|ABK37348.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 204

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V GV Y +  P+     L +IG   T+     +R+D   L
Sbjct: 1   MIGRLRGVVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS +TAT+ V S+  +    + ++PG+  K 
Sbjct: 61  YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM------SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E+K +   L   V  D+      +   +E A     P  +  A SALV LGY  
Sbjct: 121 AERLVVEMKDR---LKGWVSHDLFSPAEITLPARESA--LRAPDSSEEAASALVALGYKP 175

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            QA+  V  V     ++ D   IIR ALR++
Sbjct: 176 QQASQIVSKVAADGMSVED---IIREALRSL 203


>gi|241668355|ref|ZP_04755933.1| Holliday junction DNA helicase RuvA [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876888|ref|ZP_05249598.1| holliday junction DNA helicase ruvA [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842909|gb|EET21323.1| holliday junction DNA helicase ruvA [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 217

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 12/213 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG+I    +L+    +R+D  +L
Sbjct: 1   MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQISLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + +D++ F  L  V G+GAR A+ +LS + +T L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV----QQDMSCVNKEQAHICSMPSFAINAI-----SALVNLG 171
           A R++ E+  K + +++ +        + VN         P+   N+I      AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYSQSSSTSASVNANSVQHTQTPAAISNSIFSESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           Y Q  A   +   + +    A   + IR AL+ 
Sbjct: 181 YKQKDAEKMIRGTIGESTTAA---EAIRKALQG 210


>gi|152996211|ref|YP_001341046.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1]
 gi|189045756|sp|A6VXD2|RUVA_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150837135|gb|ABR71111.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1]
          Length = 200

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +++DV G+ Y +   + T+  L +IG   TLF    +++D   L
Sbjct: 1   MIGRIVGTLIEKTPPELMVDVNGIGYEVSASMTTIYDLPQIGGQVTLFTHLLVKEDSHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F +L  V G+G ++A+ +LS +++ EL+ ++   +   + +IPG+  K 
Sbjct: 61  YGFIDKNERALFRVLIKVNGIGPKMALAILSSMSSEELITNVQESDVTALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L    + D+         + + P     A +AL++LGY   +A  A
Sbjct: 121 AERLIIELRDK---LGQAAKTDLFSAPAVLRQVQADPRQ--EAEAALISLGYKPQEAAKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V     + A+   +I+ AL+ +
Sbjct: 176 IAGV---PVDAANSEDVIKAALKGM 197


>gi|302561707|ref|ZP_07314049.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus
           Tu4000]
 gi|302479325|gb|EFL42418.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus
           Tu4000]
          Length = 201

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 17/203 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RVGQPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F+LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFVLLQTASGVGPRLAQAMLAVHSPDALRGAVATGDEKALTAVPGIGRKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ ELK   G+ +  +  V   ++   ++Q H            +AL+ LGY   +A
Sbjct: 120 AQKLLLELKDRLGEPVG-APAVGAPVTSGWRDQLH------------AALIGLGYATREA 166

Query: 178 TTAVVSVLKKEKNIADDSQIIRL 200
             AV +V  + +      Q+ +L
Sbjct: 167 DEAVAAVTPQAEAAEGTPQVGQL 189


>gi|114563352|ref|YP_750865.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB
           400]
 gi|122299598|sp|Q081N8|RUVA_SHEFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114334645|gb|ABI72027.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB
           400]
          Length = 205

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 2/189 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       V++DV GV Y +  P+ +   L  +     LF    +R+D   L
Sbjct: 1   MIGRLSGILVEKQAPEVVLDVNGVGYELQVPMTSFYELPALNQAAMLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVSCVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +        ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLVIEMRDKLKSLLEASAGSEREFMLQSNYTPAAAVDSAEEDAISALLSLGYKPAQAS 180

Query: 179 TAVVSVLKK 187
            +V +  K+
Sbjct: 181 KSVSAAFKE 189


>gi|320109383|ref|YP_004184973.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4]
 gi|319927904|gb|ADV84979.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4]
          Length = 198

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y +   + T S L   G    LF+ T +R+D I L
Sbjct: 1   MIAHLRGRLLAKSPNQAIVECGGVGYDVAISVTTFSALKSEGAEVELFINTQVREDAIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L +V G+G ++ + VLS I A  LV +I   +   + +IPGI  K 
Sbjct: 61  FGFAEMEEKRLFEKLITVSGIGPKLGITVLSGIAAPLLVAAIKGSDHATLQKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K         +DM           + P+   + +SAL NLGY +  A  A
Sbjct: 121 AERVVVELKDKL--------EDMISAPSADPGFHAGPA-GDDVLSALANLGYQKAAAQRA 171

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           + + +++E  +  +  ++ R A+ A+
Sbjct: 172 IQTAIEQEPALRTEFEKLFRAAMGAM 197


>gi|291458999|ref|ZP_06598389.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418253|gb|EFE91972.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 203

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L E  VL++  G+ Y I  P   L  L   G+   +     +R+D + L
Sbjct: 1   MIRYVRGILRELREGMVLVEAGGLGYGIRVPASLLPALPPPGEEVKIHTYFSVREDAMEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  DR  F+ L  V G+G + A+G+LS +   EL  +I   + + I   PGI  K 
Sbjct: 61  FGFLTAEDRDIFVRLLGVSGIGPKGALGILSVLRPEELRRAIFSGDIRSIQAAPGIGKKT 120

Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ +LK K      L +    ++    +E     ++   A  A+ AL++LGYG  +A
Sbjct: 121 AERLILDLKDKIDPPDFLPAFSDGEIPEGGEE-----ALRDSAKEALEALLSLGYGMAEA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV  V   E    DD  +++ +LR ++
Sbjct: 176 QRAVRRVKLTEDMTPDD--VLKQSLRHLA 202


>gi|150009258|ref|YP_001304001.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis
           ATCC 8503]
 gi|256841816|ref|ZP_05547322.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13]
 gi|298376955|ref|ZP_06986909.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19]
 gi|301311050|ref|ZP_07216979.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3]
 gi|166230579|sp|A6LFB5|RUVA_PARD8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149937682|gb|ABR44379.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis
           ATCC 8503]
 gi|256736710|gb|EEU50038.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13]
 gi|298265939|gb|EFI07598.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19]
 gi|300831113|gb|EFK61754.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3]
          Length = 196

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T S  G       +++   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R+ F+LL SV GVG   A  +LS +  +ELV+ I  +N   +  + GI +K 
Sbjct: 60  FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   + S+        N  +A + S  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPMESMAG------NLPEASV-SNGAVTEEAVAALVMLGFQKAASQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++LK    +A + Q+I+ ALR
Sbjct: 173 VSAILKGSPTLAVE-QVIKTALR 194


>gi|15895553|ref|NP_348902.1| Holliday junction DNA helicase RuvA [Clostridium acetobutylicum
           ATCC 824]
 gi|20455254|sp|Q97GT0|RUVA_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15025290|gb|AAK80242.1|AE007729_9 Holliday junction specific DNA helicase, subunit ruvA [Clostridium
           acetobutylicum ATCC 824]
 gi|325509702|gb|ADZ21338.1| Holliday junction DNA helicase motor protein [Clostridium
           acetobutylicum EA 2018]
          Length = 201

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 10/192 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DY+++D  GV Y I+    T++ + K  +   +++   +RQD I L
Sbjct: 1   MYEYIKGKYIGINKDYIIVDNNGVGYKIFTSGNTMANMPKPEEDVLIYLTQIVRQDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F  L ++ GVGA+ ++ +LS  T   L  +II  + K I + PGI  K 
Sbjct: 61  YGFLTKDELEMFNKLLTINGVGAKASLSLLSICTVNNLKYAIITGDEKTIVKAPGIGKKT 120

Query: 121 ASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A RI+ ELK K     IS  +    ++     E +       FA+N+      LGY + +
Sbjct: 121 AQRIILELKDKFKSTDISKGNSEINNLDVDYDEHSKKLEEVRFALNS------LGYSEKE 174

Query: 177 ATTAVVSVLKKE 188
              A+ +V K E
Sbjct: 175 TDRAINNVDKSE 186


>gi|330815560|ref|YP_004359265.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia
           gladioli BSR3]
 gi|327367953|gb|AEA59309.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia
           gladioli BSR3]
          Length = 193

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPHTGERVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL + + LQ+S  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKISGIGARMALAVLSGMSVQELSQVVTLQDSARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+     E A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLG----ELAGQASQSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQI---IRLALRAIS 206
           +       KN+   + +   I+L+L+A+S
Sbjct: 170 I-------KNVPAGTGVSDGIKLSLKALS 191


>gi|255015865|ref|ZP_05287991.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_7]
          Length = 196

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T S  G       +++   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGS-KTTGKIYIYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R+ F+LL SV GVG   A  +LS +  +ELV+ I  +N   +  + GI +K 
Sbjct: 60  FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   + S+        N  +A + S  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPMESMAG------NLPEASV-SNGAVTEEAVAALVMLGFQKAASQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++LK    +A + Q+I+ ALR
Sbjct: 173 VSAILKGSPTLAVE-QVIKTALR 194


>gi|227538550|ref|ZP_03968599.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241469|gb|EEI91484.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 194

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 104/188 (55%), Gaps = 11/188 (5%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +V++DV G+ Y I+  + T + + K  + C LF+   +R+D   LFGF ++ +RQ F  L
Sbjct: 16  HVVLDVNGIGYYIHISLNTFALI-KDQENCKLFISFQVREDSQTLFGFATEGERQLFEHL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV G+G      +LS IT  E+  +II     VI +I GI  K A R++ EL+ K    
Sbjct: 75  ISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKTAQRLILELQDK---- 130

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
             + +Q    +    A   S+P     A+SAL+ LG+ ++QA   + +++  E +++ + 
Sbjct: 131 --LKKQGPDALISPVATKQSVPE---EALSALIMLGFVKNQAEKVLNTIINTEPDLSVE- 184

Query: 196 QIIRLALR 203
           Q+I+LAL+
Sbjct: 185 QLIKLALK 192


>gi|323495172|ref|ZP_08100257.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546]
 gi|323310612|gb|EGA63791.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546]
          Length = 205

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 31/220 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGK---------------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
           A R++ E+K +               A  + S VQ   S   +E             A+S
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPYTDAAPVDSAVQASQSSAEEE-------------AVS 167

Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           AL+ LGY   QA+  V  V+K E       Q+IR AL+++
Sbjct: 168 ALLALGYKPTQASKVVSQVMKPEMT---SEQLIREALKSM 204


>gi|127513004|ref|YP_001094201.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4]
 gi|166200262|sp|A3QEP4|RUVA_SHELP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126638299|gb|ABO23942.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4]
          Length = 205

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 15/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGLLVEKQAPEVLIETGGVGYEVQMPLTSFYELPELNQEAVIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA E V+ +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVKCVEHDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS--MPSFAIN-----AISALVNLGYG 173
           A R++ E++ K  SL      + S  N+ +  + S   P+  +N     AISAL+ LGY 
Sbjct: 121 AERLLVEMRDKLKSL-----MEASHGNEREFVLQSNYTPAPVVNTAEEDAISALLALGYK 175

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             QA+ AV SV ++     D   +I+ +L+++
Sbjct: 176 PAQASKAVSSVFEEG---MDSETLIKASLKSM 204


>gi|189468525|ref|ZP_03017310.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM
           17393]
 gi|189436789|gb|EDV05774.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM
           17393]
          Length = 201

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  G+ Y +   + T + + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLK 118

Query: 120 IASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            A R++ +LK K      S  S +      ++   A +         AI+AL  LG+ Q 
Sbjct: 119 TAQRVIVDLKDKIKTGTASAGSTIGSLGGMLSAANAQVQE------EAIAALTMLGFAQA 172

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
            +   V+++LK E + A   Q+I+LAL+
Sbjct: 173 PSQKVVLAILKDEPD-APVEQVIKLALK 199


>gi|323706513|ref|ZP_08118072.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534143|gb|EGB23935.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 186

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 16/184 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I     DYV+I+  G+ + I  P  TLS L    +   L+   H+++D  +L
Sbjct: 1   MIDYIKGHIVEKGIDYVVIETLGIGFKIIVPRSTLSHLTNTSEIIKLYTYMHVKEDGFQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F  L +V GVG + A+ +LS I+     ++I   +SK I + PGI  K 
Sbjct: 61  YGFLTTNEVEIFKKLIAVNGVGPKAAVSILSTISIEGFYDAIRNSDSKAIEKSPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                   AH   +   + + + AL++LGY + ++  A
Sbjct: 121 AQRIILELKDKLTF----------------AHDVKLDDLSNDVVDALLSLGYTKQESIKA 164

Query: 181 VVSV 184
           +  V
Sbjct: 165 LEGV 168


>gi|320528952|ref|ZP_08030044.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399]
 gi|320138582|gb|EFW30472.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399]
          Length = 198

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     D+ L+DV  V Y ++   +T + + + G+   L++ TH+R+D I L
Sbjct: 1   MIGFLRGTVVHSAVDHCLLDVHNVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L  + G+G + A  +LS +T  +    I  ++ K I ++PGI  K 
Sbjct: 60  YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKDVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +     D S V  + +      S    A  AL++LG+ Q++  T 
Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAVVSDVS-----DSMLAEATEALMSLGFQQNEIQT- 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
              V + + +     +++R AL
Sbjct: 174 ---VFQGKTDYQSTEELVRYAL 192


>gi|253566072|ref|ZP_04843526.1| Holliday junction DNA helicase motor protein [Bacteroides sp.
           3_2_5]
 gi|251945176|gb|EES85614.1| Holliday junction DNA helicase motor protein [Bacteroides sp.
           3_2_5]
          Length = 201

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L     +ID  G+ Y +   + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAIQGK--SSCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQD-------MSCVNKEQAHICSMPSFAINAISALVNLGY 172
            A R++ +LK K  + +             +  +N E             AI+AL  LG+
Sbjct: 119 TAQRVIVDLKDKIKTGAMAATAVGGAAGALLPAMNAEVQE---------EAIAALTMLGF 169

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
               +  AV+++LK+E + A   ++I+LAL+
Sbjct: 170 AATPSQKAVLAILKEEPD-APVEKVIKLALK 199


>gi|21220019|ref|NP_625798.1| Holliday junction DNA helicase RuvA [Streptomyces coelicolor A3(2)]
 gi|20455268|sp|Q9L290|RUVA_STRCO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|6822215|emb|CAB70921.1| holliday junction DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 201

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 17/200 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +I+V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ ELK   G+ I  +  V   +S   ++Q H            +AL+ LGY   +A
Sbjct: 120 AQKLLLELKDRLGEPIG-APAVGAPVSTGWRDQLH------------AALIGLGYATREA 166

Query: 178 TTAVVSVLKKEKNIADDSQI 197
             AV +V  + +      Q+
Sbjct: 167 DEAVSAVAPQAEAAGGTPQV 186


>gi|262368599|ref|ZP_06061928.1| Holliday junction helicase subunit A [Acinetobacter johnsonii
           SH046]
 gi|262316277|gb|EEY97315.1| Holliday junction helicase subunit A [Acinetobacter johnsonii
           SH046]
          Length = 200

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D   L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   ++  F  L  V GVG ++A+G+LS ++   L+ ++  ++   + ++PG+  K 
Sbjct: 60  YGFLHQQEKIIFRTLLKVNGVGPKMALGILSTLSVDMLIHTVEHEDINTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  ++SS      S V  EQ       + A  A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKAMSSGAAPSNSTV--EQIQFTGNSAVA-EAEAALQSLGYKPLEAQKL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +    + +  + S IIR AL++++
Sbjct: 177 VSAA---KGDFTEASDIIRAALKSMN 199


>gi|323143601|ref|ZP_08078278.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT
           12066]
 gi|322416664|gb|EFY07321.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT
           12066]
          Length = 207

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M G ++G +  +    VLI+V GV Y +  P+ +L+ +  + +   ++V   +R+D   L
Sbjct: 1   MFGSLRGKVLRIDGVTVLIEVGGVGYEVEMPVTSLAKI-SVNEEEFIYVHHVVREDDELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    DR  F  L  V GVG ++A+ VLS   A + + ++    +  + Q+PG+  K 
Sbjct: 60  YGFCDLSDRTLFRELIKVNGVGPKLALAVLSSFNAHDFIAAVTSGRTGALTQVPGVGKKT 119

Query: 121 ASRIMTELKGK--AISLSSVVQQ-DMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQ 176
           A R+M ELK +   + LS  V   D+S VN   A + ++   A++ A+SAL+ LGY +  
Sbjct: 120 AERLMVELKDRLDKLPLSDTVSTADLSKVNGMAAVVGNI---AVDEAVSALIGLGYKEAL 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           A   V SV K+     D  QII  AL  IS
Sbjct: 177 AFEYVNSVAKEG---MDTKQIIVAALGLIS 203


>gi|295109923|emb|CBL23876.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus obeum
           A2-162]
          Length = 203

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 4/186 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +    E+ V+++  G+ Y I+    ++    +      +    H+R+D ++L
Sbjct: 1   MISFIRGLVADTTENSVILEAGGIGYEIFMTGSSIEQASRSDGKVKIHTYFHVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G + A+GVL+ +TA EL  +++  + K I++ PGI  K 
Sbjct: 61  YGFLSRDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS--MPSFAINAISALVNLGYGQDQAT 178
           A +++ ELK K + L    ++ ++   +E A I    +      A+ ALV LGY   +A 
Sbjct: 121 AQKLILELKDK-LKLEDAFEKKLAH-EQEAADISGSVLHDGRQEAVEALVALGYSSTEAM 178

Query: 179 TAVVSV 184
            AV  V
Sbjct: 179 KAVRKV 184


>gi|329893679|ref|ZP_08269813.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC3088]
 gi|328923606|gb|EGG30918.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC3088]
          Length = 205

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +       ++++  GV Y I  P+ TL  L  +GD   +     +R+D   L
Sbjct: 1   MIGSIRGRLIVKQPPDIVVEAAGVGYEIQVPMTTLFQLPALGDDVLILTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D DRQ F  L  V GVG ++A+ +LS + A      +   +   +  +PG+  K 
Sbjct: 61  YGFVDDTDRQLFRQLIKVNGVGPKLALAILSGMDAVAFARCVGRNDVSALVALPGVGKKT 120

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E++ +    LS +  Q  +      A I   P    +A SALV LGY   +A+ 
Sbjct: 121 AERLIVEMRDRLGDWLSQLSPQGENAGGIVGATIAHDP--IADAESALVALGYKPQEASR 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V SV   +    D   +IRLALR+
Sbjct: 179 LVQSVAGDQD--LDSETLIRLALRS 201


>gi|206901849|ref|YP_002251320.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum
           H-6-12]
 gi|206740952|gb|ACI20010.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum
           H-6-12]
          Length = 193

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 20/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59
            +  I G +  + ED+V++D     + IY      L    K+GD   L+V   + +D ++
Sbjct: 3   FLNHIYGKLLRIAEDFVVVDTGAFGFKIYIGKNLALKLNEKLGDNVLLYVAEVIEKDNVK 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFLS+ +R  F  L+++ GVG ++A+ ++S +   E  E +  ++   +  IPGI  K
Sbjct: 63  LFGFLSEEERDLFESLKNITGVGVKIALRIVSTLPPKEFYEVLEKEDLNTLLNIPGIGKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           IA +I  E+KG    +   V  D   V K                +AL+NLGY +     
Sbjct: 123 IAQKIFLEIKG---VIPKRVYNDEENVIK----------------NALLNLGYDKKDIEL 163

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  + K+ K++ +  +II+ AL+ +S
Sbjct: 164 VMRDIRKEFKSLDNLEEIIKFALKRLS 190


>gi|212550754|ref|YP_002309071.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229470529|sp|B6YR38|RUVA_AZOPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212548992|dbj|BAG83660.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 196

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 19/208 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG I  L  D V+I+   + Y+++  + T   L KI   C L++   +R++  +L
Sbjct: 1   MLDFIKGEIVELIPDSVIIETGNIGYMLFISLNTYFSLTKIKS-CKLYIYEVIREETHQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +RQ F  L SV GVGA +A  VLS ++  EL E I   N   +  + GI  K 
Sbjct: 60  FGFIDKKERQLFTHLISVPGVGANIARMVLSSLSVCELEEIIFSGNVSALQALKGIGNKT 119

Query: 121 ASRIMTELKGKA-----ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ +LK K       S  +++    S + KE             AI+AL+ LG+ Q 
Sbjct: 120 AERIIIDLKDKVKPDNIPSSDTIITNISSNITKE-------------AITALITLGFSQS 166

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
            +   V  ++    +     QII+ AL+
Sbjct: 167 ASQKVVNKIVSNNSSSTTIEQIIKKALK 194


>gi|237720151|ref|ZP_04550632.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4]
 gi|229450703|gb|EEO56494.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4]
          Length = 200

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS---FAINAISALVNLGYGQDQ 176
            A R++ +LK K  ++ +      S      A +   P+       A+SAL  LG+    
Sbjct: 119 TAQRVIVDLKDKIKTMGT------SAAGGASAGLLLQPANVEVQEEAVSALTMLGFAAAP 172

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           +   V+++LK+E + A   ++I+LAL+
Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198


>gi|145297804|ref|YP_001140645.1| Holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166229628|sp|A4SJ25|RUVA_AERS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|142850576|gb|ABO88897.1| holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 204

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG   T+     +R+D   L
Sbjct: 1   MIGRLRGVVIEKQPPEVLLEVGGLGYEVQMPMSCFYDLPEIGKEVTIHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS +TAT+ V S+  +    + ++PG+  K 
Sbjct: 61  YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK----EQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +   L   V  D+    +     +  +   P  +  A SALV LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWVSHDLFSPAEISLPARESVLRAPDSSEEAASALVALGYKPQQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K+  ++ D   IIR +LR++
Sbjct: 178 ASQIVSKIAKEGMSVED---IIRESLRSL 203


>gi|71909671|ref|YP_287258.1| Holliday junction DNA helicase motor protein [Dechloromonas
           aromatica RCB]
 gi|90134857|sp|Q478E3|RUVA_DECAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71849292|gb|AAZ48788.1| Holliday junction DNA helicase subunit RuvA [Dechloromonas
           aromatica RCB]
          Length = 192

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 32/214 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DV GV Y +  P+ T   L   G+   L     +R+D   L
Sbjct: 1   MIGRLTGILAEKNPPQIVLDVNGVGYELDVPMSTFYNLPAAGEKTKLLTHFAVREDGHYL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F  L  V G+GAR A+ VLS ++  +L  ++  Q    + +IPGI  K 
Sbjct: 61  YGFLTEAERFAFRQLLKVSGIGARTALSVLSGLSVGDLAAAVAQQELGRLIKIPGIGKKT 120

Query: 121 ASRIMTELKGK-----AISLSSVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A R++ ELKGK      +SL   V   +QD+S                    +AL+ LGY
Sbjct: 121 AERLLLELKGKLADATGVSLHPAVDDSKQDIS--------------------NALLALGY 160

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +A +A    +K+       S  IR AL+ +S
Sbjct: 161 NEKEAASA----MKQLPADVSTSDGIRAALKLLS 190


>gi|332305758|ref|YP_004433609.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173087|gb|AEE22341.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 207

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 109/210 (51%), Gaps = 9/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VLIDV GV Y I  P+ +   L ++G+  +++    +R+D   L
Sbjct: 1   MIGRIRGTLIEKQPPEVLIDVSGVGYEIQIPMTSFYQLPEVGEQASVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L    GVG ++A+ +LS ++    ++ +  ++   + ++PG+  K 
Sbjct: 61  FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQNFMQCVAHEDITALVKLPGVGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNK---EQAHICSMPSFAINAISALVNLGYGQD 175
           A R++ E++   K +SL      D +       E   + S  +    A+SAL+ LGY   
Sbjct: 121 AERLVIEMRDRFKKLSLEQSAGDDFTLQGSNGIENTFVTSTDA-KEEALSALIALGYKAQ 179

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+  + SV    K+I  ++ +IR ALRA+
Sbjct: 180 QASKVINSVYV--KDITSEA-LIREALRAM 206


>gi|54025666|ref|YP_119908.1| Holliday junction DNA helicase RuvA [Nocardia farcinica IFM 10152]
 gi|81374258|sp|Q5YTE7|RUVA_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54017174|dbj|BAD58544.1| putative Holliday junction DNA helicase B subunit [Nocardia
           farcinica IFM 10152]
          Length = 201

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++  GV Y +     TL+ L + G    L+    +R+D + L
Sbjct: 1   MIASVRGEVLEIALDHVVVEAAGVGYRLNATPSTLATLTR-GAEARLYTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM VL+ +    L +++   N   + ++PGI  + 
Sbjct: 60  YGFADTEARDLFGLLQTVSGVGPRLAMAVLAVLEPEALRKALAESNVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQD 175
           A R++ EL+ K           ++ V  +     S P+ A        + AL  LG+   
Sbjct: 120 AERMVVELRDK-----------VNLVPVQAGPPGSTPAVAATPVREQVVEALTGLGFPLK 168

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLAL 202
           QA  A+ +VL  E+  AD S  +R AL
Sbjct: 169 QAEQALDTVL-AEQPAADTSTALRAAL 194


>gi|295084896|emb|CBK66419.1| Holliday junction DNA helicase subunit RuvA [Bacteroides
           xylanisolvens XB1A]
          Length = 200

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIHEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ +LK K  ++S       S     Q     +      A+SAL  LG+    +  
Sbjct: 119 TAQRVIVDLKDKIKTMSGSAGGGSSAGLLLQPANAEVQE---EAVSALTMLGFAAAPSQK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V+++LK+E + A   ++I+LAL+
Sbjct: 176 VVLAILKEEPD-APVEKVIKLALK 198


>gi|237714009|ref|ZP_04544490.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1]
 gi|262407061|ref|ZP_06083610.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22]
 gi|294644868|ref|ZP_06722608.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a]
 gi|294809795|ref|ZP_06768479.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229445833|gb|EEO51624.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1]
 gi|262355764|gb|EEZ04855.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22]
 gi|292639806|gb|EFF58084.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a]
 gi|294443035|gb|EFG11818.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 200

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIHEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ +LK K  ++S       S     Q     +      A+SAL  LG+    +  
Sbjct: 119 TAQRVIVDLKDKIKTMSGSAGGGASAGLLLQPANAEVQE---EAVSALTMLGFAAAPSQK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V+++LK+E + A   ++I+LAL+
Sbjct: 176 VVLAILKEEPD-APVEKVIKLALK 198


>gi|53714974|ref|YP_100966.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46]
 gi|60682940|ref|YP_213084.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis NCTC
           9343]
 gi|265766821|ref|ZP_06094650.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16]
 gi|81314002|sp|Q5L9Q7|RUVA_BACFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81381448|sp|Q64PZ9|RUVA_BACFR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52217839|dbj|BAD50432.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46]
 gi|60494374|emb|CAH09170.1| putative holliday junction DNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|263253198|gb|EEZ24674.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16]
 gi|301164406|emb|CBW23964.1| putative holliday junction DNA helicase [Bacteroides fragilis 638R]
          Length = 201

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L     +ID  G+ Y +   + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAIQGK--SSCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQD-------MSCVNKEQAHICSMPSFAINAISALVNLGY 172
            A R++ +LK K  + +             +  +N E             AI+AL  LG+
Sbjct: 119 TAQRVIVDLKDKIKTGAMAATAVGGAAGALLPAMNAEVQE---------EAIAALTMLGF 169

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
               +  AV+++LK+E + A   ++I+LAL+
Sbjct: 170 AAAPSQKAVLAILKEEPD-APVEKVIKLALK 199


>gi|78065251|ref|YP_368020.1| Holliday junction DNA helicase motor protein [Burkholderia sp. 383]
 gi|90134649|sp|Q39JJ0|RUVA_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77965996|gb|ABB07376.1| DNA recombination protein, RuvA [Burkholderia sp. 383]
          Length = 193

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQNGERVVLLTQQIVREDANLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+     E A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AERLLL-------ELKGKLGADLG----ELAGAASPSDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|242280346|ref|YP_002992475.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM
           2638]
 gi|259495638|sp|C6C065|RUVA_DESAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|242123240|gb|ACS80936.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM
           2638]
          Length = 203

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 108/208 (51%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNI-EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G + E   +  +++   GV Y ++  +  +S L + G   T +V + +R+D   
Sbjct: 1   MIAYIHGKLLEATDKSCIILTPGGVGYELFLTLSAISTLPESGSDVTFYVHSVIREDAFD 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    DR+ F  L SV  +G + A+ +LS+    +L + +  ++ K ++ +PGI  K
Sbjct: 61  LYGFPCFDDREVFRTLISVDRLGPKKALAILSQFGPKDLQDLVFREDVKTLSIVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A +I+  LK K  +L S   +  +C V  +++         ++A+S L NLGYG D+  
Sbjct: 121 SARQILWSLKDKMETLKSATVRSGACPVEGDRSEF-------LDALSGLRNLGYGDDEVR 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +  +  +E ++ D    IR+AL+ IS
Sbjct: 174 DFLKDIFDEEPDL-DAGGAIRVALKKIS 200


>gi|163846991|ref|YP_001635035.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524813|ref|YP_002569284.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl]
 gi|189045746|sp|A9WA87|RUVA_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766952|sp|B9LCT8|RUVA_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163668280|gb|ABY34646.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448692|gb|ACM52958.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl]
          Length = 195

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I+ +  D+++++  GV  +IY P  TL+ +G+IG    L+    +R+D + L
Sbjct: 1   MIASIRGIIQSIGIDHLIVETGGVGLLIYAPRSTLNAVGQIGSETFLYTLLIVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++A+ +LS  +  E+ +SI   +   +A++PGI  K 
Sbjct: 61  YGFSDPAQRNLFEQLIGVSGVGPKIALNLLSSGSPDEIQKSIAGGDIARLARVPGIGKKT 120

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A RI+ EL+GK     LS     ++S +++E   I             L++LGY
Sbjct: 121 AERIVLELRGKIDLRQLSGTTPGNVSTLDRELTDI-------------LISLGY 161


>gi|254303051|ref|ZP_04970409.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148323243|gb|EDK88493.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 194

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 82/145 (56%), Gaps = 1/145 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145
           A  I+ +LKGK  +L+   ++ +S 
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM 144


>gi|313203476|ref|YP_004042133.1| holliday junction DNA helicase subunit ruva [Paludibacter
           propionicigenes WB4]
 gi|312442792|gb|ADQ79148.1| Holliday junction DNA helicase subunit RuvA [Paludibacter
           propionicigenes WB4]
          Length = 196

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 105/212 (49%), Gaps = 27/212 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L   YV+++  G+ Y I+  + T S LG+      L+V   +R+D   L
Sbjct: 1   MIDYIKGEISELTPAYVVLETAGIGYFIHITLPTFSFLGEHTS-AKLYVYESIREDAHVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +RQ F+LL SV G+GA  A  ++S  +A E+ + I   N   +  I GI  K 
Sbjct: 60  YGFRLQSERQLFLLLISVSGIGANTARMIMSSYSAQEIQDMIASGNVSALNAIKGIGTKT 119

Query: 121 ASRIMTELKGK---------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           A RI+ +LK K          ISL   VQ +     KE+            A+SALV LG
Sbjct: 120 AQRIIVDLKDKIMKSAGGSEIISLVPNVQNE----KKEE------------AVSALVMLG 163

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           +    A+  VV  + +E+      Q+I+LAL+
Sbjct: 164 FAAS-ASQKVVDKIVQEQPALKVEQLIKLALK 194


>gi|258621408|ref|ZP_05716442.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573]
 gi|258626836|ref|ZP_05721643.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603]
 gi|262165955|ref|ZP_06033692.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223]
 gi|258580883|gb|EEW05825.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603]
 gi|258586796|gb|EEW11511.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573]
 gi|262025671|gb|EEY44339.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223]
          Length = 204

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A I S P+ A N    AISAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|325917782|ref|ZP_08179966.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535998|gb|EGD07810.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 194

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 77/137 (56%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITGGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ EL+ +A   SS
Sbjct: 121 AERMVVELRDRAADFSS 137


>gi|121603423|ref|YP_980752.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans
           CJ2]
 gi|120592392|gb|ABM35831.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans
           CJ2]
          Length = 192

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 37/216 (17%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +  P+ T   L  +G+  +LF    +R+D   L
Sbjct: 3   MIGRLTGQLAEKNPPEILVDCHGVGYEVLVPMSTFYNLPGLGEKISLFTHFIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVG R+A+ VLS ++  EL +++ LQ +  I ++PGI  K 
Sbjct: 63  YGFGSTAERGAFRQLIKITGVGPRMALSVLSGMSVAELAQAVTLQEAGRIVKVPGIGKKT 122

Query: 121 ASRIMTELK-------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++ ELK       G  +S+SS  Q D+                    + ALV LGY 
Sbjct: 123 AERLLLELKGKLGADIGAHVSVSSEAQLDI--------------------LQALVALGYS 162

Query: 174 QDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206
              A  A+       K +  D   S+ I+LALRA+ 
Sbjct: 163 DKDAALAL-------KALPPDVGVSEGIKLALRALG 191


>gi|270157092|ref|ZP_06185749.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968]
 gi|289164497|ref|YP_003454635.1| holliday junction DNA helicase [Legionella longbeachae NSW150]
 gi|269989117|gb|EEZ95371.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968]
 gi|288857670|emb|CBJ11513.1| holliday junction DNA helicase [Legionella longbeachae NSW150]
          Length = 198

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 20/212 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G+I   Y+   L+ +V GV Y +   + T   L  +     L + T +R+D + 
Sbjct: 1   MIGWLDGHIVDKYQPGKLVLNVHGVGYDVETSLNTFFKLDTLNGSVGLHIHTIVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R+ F  L  V GVG ++AM +LS IT  E +E I  +N+  + ++PGI  K
Sbjct: 61  LYGFLDRQERELFRALIKVNGVGPKLAMSILSSITPNEFIECIQQENAVFLMKLPGIGKK 120

Query: 120 IASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            A R++ E    LK  ++  S  ++ D    ++++            A+SAL  LGY   
Sbjct: 121 TAERLVVEMRDSLKQFSVPCSESLKSDHRMSDQDE------------AVSALEVLGYKPQ 168

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           +A  AV  V      +    Q+IR AL+ ++ 
Sbjct: 169 EALKAVKKV---NDGVKSCEQLIRDALQVLAA 197


>gi|119716613|ref|YP_923578.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp.
           JS614]
 gi|166230576|sp|A1SJA6|RUVA_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119537274|gb|ABL81891.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp.
           JS614]
          Length = 200

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 18/211 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +++V GV   I C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVRGQVAAVTLSSAVLEVGGVGLDIMCTPGTLATL-RVGQQAALPTSMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + ++Q F LLQ+  GVG ++A  +L+ ++  +L  +I   + K + ++PGI  K 
Sbjct: 60  FGFADEDEKQTFELLQTASGVGPKLAQAMLAVLSTDDLRLAITGDDVKTLTRVPGIGQKG 119

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ EL+ +         S+ V      V ++Q H              LV LG+   
Sbjct: 120 AQRIILELRDRIGAPTGAGRSAGVPAPAGAVWRDQVH------------QGLVGLGWPVR 167

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A  AV +V  +  ++ D + ++R ALR +S
Sbjct: 168 DAEKAVAAVAPEAGDVPDVAALLRAALRTLS 198


>gi|254445801|ref|ZP_05059277.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium
           DG1235]
 gi|198260109|gb|EDY84417.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium
           DG1235]
          Length = 205

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E       +I+  G+ Y+++ P+ T + L   G+   L      R+D   L
Sbjct: 1   MIVSIEGILERATPLTAIINAGGLGYLVHIPVSTAAKLPANGETVKLHTHAVYREDSQSL 60

Query: 61  FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S+ +R +F LL + V GVG +VA+G++S++    L+ +I   ++ ++A+ PGI  K
Sbjct: 61  YGFASEDERNFFQLLIEKVSGVGPKVAIGMMSKLELPSLISAIGNADAVLLAKTPGIGKK 120

Query: 120 IASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ ELK K  A + +S        V    A    + S   +AI AL+ LGY Q  A
Sbjct: 121 TAERVVIELKDKLGAFAHTSSANPLQGLVPGNTAAAGKV-SHEDDAILALLALGYKQSDA 179

Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202
             +V   ++     A    +I+ AL
Sbjct: 180 AKSVGKAVEALGPNASTEALIKAAL 204


>gi|299067939|emb|CBJ39153.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum CMR15]
          Length = 193

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 27/212 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKIALLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ ELKGK      A+    VV  D                 A++ ++AL+ LGY  
Sbjct: 121 AERLLLELKGKLGADLGAVPGGPVVSDD-----------------AVDVLNALLALGYSD 163

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +A  A+    K+       S+ I+LAL+A+S
Sbjct: 164 KEAAQAI----KQVPAGTGVSEGIKLALKALS 191


>gi|189502747|ref|YP_001958464.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|229470527|sp|B3EU33|RUVA_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189498188|gb|ACE06735.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 194

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G+I       +++DV G+ Y +   ++T   L  I   C +F   H+ QD   L
Sbjct: 1   MIAYIQGSITYKSPTQLIVDVGGIGYELQISLQTYDSLKDIAASCKIFTYLHITQDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++Q F+ L SV G+G RVA+ +LS +T   L ++I+  ++  +  + GI  K 
Sbjct: 61  YGFSTIEEKQCFLQLLSVNGIGPRVAITILSALTPEALQQAIMTHDTITLQAVKGIGQKA 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+GK   + +++    S             +    A++AL  LG  +  A   
Sbjct: 121 AQRIILELQGKVGKVGNMLSLQPS----------GQEAIYQEALAALSKLGIHKSTAEKT 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V ++LK+ +       +I+LAL+ 
Sbjct: 171 VAAILKEHQGEITVESLIKLALKG 194


>gi|297198358|ref|ZP_06915755.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC
           29083]
 gi|197714415|gb|EDY58449.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC
           29083]
          Length = 201

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 26/215 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTIAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RLGQPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFVDDDERQIFELLQTASGVGPRLAQAMLAVHAPDALRRAVATGDEKALIAVPGIGKKG 119

Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +++ ELK +      A ++ + V Q      ++Q H            +AL+ LGY  
Sbjct: 120 AQKLLLELKDRLGEPIGAPAIGAPVTQGW----RDQLH------------AALIGLGYAT 163

Query: 175 ---DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              D+A TAV    +  +      Q+++ AL+ ++
Sbjct: 164 READEAVTAVTPQAEASEGTPQVGQLLKAALQTLN 198


>gi|119504258|ref|ZP_01626338.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2080]
 gi|119459766|gb|EAW40861.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2080]
          Length = 209

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +       +L+DV G+ Y +  P+ TL  L ++G+  TL     +R+D   L
Sbjct: 1   MIGYLRGRLIVKRPPELLVDVGGIGYELQVPMTTLFDLPEVGEEVTLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + DR+ F  L  V GVG ++A+ +LS + A    + +   +   +  +PG+  K 
Sbjct: 61  YGFREEADRRLFRELIKVSGVGPKLALALLSGLDARAFAQCLQRDDVATLVALPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSF--AINAISALVNLGYGQDQA 177
           A R++ E++ KA      +++    +   Q    S+ P+      A  ALV LGY   +A
Sbjct: 121 AERLLVEMRDKA---GKWLEELSPAIPGTQGQFVSVAPAMDSRTEAEQALVALGYKLPEA 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  V +V   +++I    ++IR AL+A
Sbjct: 178 SRLVAAV--DDESIESSEELIRRALKA 202


>gi|157375170|ref|YP_001473770.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3]
 gi|189045772|sp|A8FUW9|RUVA_SHESH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157317544|gb|ABV36642.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3]
          Length = 205

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQG+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGLLVEKQAPEILLEVQGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E++ K   L S+++       +        P+  IN     AI+AL++LGY   
Sbjct: 121 AERLLVEMRDK---LKSLMEASAGSEREFMLKSNYTPAPVINTAEEDAIAALLSLGYKPA 177

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+ AV +V    ++  D   +I+ +L+++
Sbjct: 178 QASKAVSAVY---QDGMDSETLIKSSLKSM 204


>gi|37522453|ref|NP_925830.1| Holliday junction DNA helicase RuvA [Gloeobacter violaceus PCC
           7421]
 gi|44888383|sp|Q7NCU2|RUVA_GLOVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|35213454|dbj|BAC90825.1| holliday junction DNA helicase [Gloeobacter violaceus PCC 7421]
          Length = 206

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 71/118 (60%)

Query: 14  EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           + +  +DV GV Y ++   RT+  L +IG+   LF    +R+D ++LFGFL   +R+ F 
Sbjct: 18  QSWATVDVGGVGYRVWTHARTVGKLPRIGEEVKLFTLMIVREDAMQLFGFLEPGERELFG 77

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
            L SV G+G R+ + +L  +  TELV++I+  N++ +A  PG+  K A R+  EL+ +
Sbjct: 78  QLVSVSGIGPRMGLALLETLAPTELVQAILQGNTRALALAPGVGAKTAQRLALELRSR 135


>gi|293400498|ref|ZP_06644643.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305524|gb|EFE46768.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 194

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 17/202 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I     D ++ID  G+ Y +Y  I     + ++    TLF   H+R+D I L
Sbjct: 1   MIAFIRGTIHSYSNDSLIIDNNGIGYRVY--IANPQAV-RLNTEVTLFTYQHVREDAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +   F+ L SV+GVG + A+G+L+   A  ++ +I   + K +  +PGI  K 
Sbjct: 58  FGFTSMEEHDLFLQLISVKGVGPKTALGMLAVCPAKNMIMAIENNDVKTLKGLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LK K      +V++      KE A +       ++AI AL  LGY   + ++ 
Sbjct: 118 ASQIVLDLKNK------LVEEVTEIEAKENAQL-------LDAIEALKALGYKNAEISSV 164

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
              ++  E++   D Q IR AL
Sbjct: 165 KKELMAMEESTTSD-QYIRKAL 185


>gi|291456789|ref|ZP_06596179.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM
           20213]
 gi|291382066|gb|EFE89584.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM
           20213]
          Length = 208

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y +      LS L   G    ++   ++ QD + L
Sbjct: 1   MIGMLTGRVESVEADTALIDVGGVGYEVRMSATDLSRL-HTGTEARVYTYMNLSQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL    ++ F+ L  V G+G +VA  +LS +TA +L  +I   ++  +A+ PG+  K 
Sbjct: 60  HGFLDQASKKTFLQLIKVSGIGPKVAQSLLSTLTAGQLARAIADNDAAALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179
           A +I+ ELKG +I LS +     S   K QA +  SM       I  L++LG+ Q  A  
Sbjct: 120 AQKIILELKG-SIDLSQIEGASPSGA-KVQAQVDTSMEQV----IEGLISLGWRQQDAQQ 173

Query: 180 AVVSVLKKEK-----NIADDSQIIRLAL 202
           AV    +        +  D  +++RLAL
Sbjct: 174 AVAEACEDNDIPTPLDTDDVPRVLRLAL 201


>gi|167037426|ref|YP_001665004.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040093|ref|YP_001663078.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514]
 gi|256752590|ref|ZP_05493444.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914176|ref|ZP_07131492.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561]
 gi|307724588|ref|YP_003904339.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513]
 gi|320115839|ref|YP_004185998.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|229560136|sp|B0K955|RUVA_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560137|sp|B0K0L7|RUVA_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166854333|gb|ABY92742.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514]
 gi|166856260|gb|ABY94668.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748528|gb|EEU61578.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889111|gb|EFK84257.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561]
 gi|307581649|gb|ADN55048.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513]
 gi|319928930|gb|ADV79615.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 187

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G IE + +DYV+ID  G+   ++ P  TL  L   G+   L+    +R+D  ++
Sbjct: 1   MIEYVRGIIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLQVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS ++    V+++   + K +   PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNAGDYKALTVAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K +    V + D +  N+              A+ AL+ LGY + +A  A
Sbjct: 121 AERIILELKDK-LPKEIVFEGDNNFSNE--------------ALEALLALGYTKSEAIYA 165

Query: 181 VVSV 184
           +  +
Sbjct: 166 LADI 169


>gi|239827859|ref|YP_002950483.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70]
 gi|259495646|sp|C5D5E9|RUVA_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239808152|gb|ACS25217.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70]
          Length = 201

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 111/207 (53%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ +  +Y++ID  G+ Y I+ P    S         T++   ++R+D + L
Sbjct: 1   MIEFVRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDTLAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     +LVE+I  +N   + + PG+  K 
Sbjct: 60  YGFRTREERTLFAKLLQVSGIGPKGGLAILAAGQPEQLVEAIEQENETFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178
           A +++ +LKGK  ++++    D+  + +E A  H+ ++      AI AL  LGY + +  
Sbjct: 120 ARQMILDLKGKLTAVTAKTFPDLFHLQEESARPHLSALE----EAIEALKALGYAEREIQ 175

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V S++K  +N++ D Q ++ AL+ +
Sbjct: 176 KVVPSLMK--ENLSTD-QYVKRALQQL 199


>gi|90411664|ref|ZP_01219674.1| Holliday junction DNA helicase motor protein [Photobacterium
           profundum 3TCK]
 gi|90327554|gb|EAS43907.1| Holliday junction DNA helicase motor protein [Photobacterium
           profundum 3TCK]
          Length = 206

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 14/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD---FCTLFVETHMRQDQ 57
           MIG++ G I       VLIDV G+ Y +  P+     L ++G     CT F+   +R+D 
Sbjct: 1   MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFI---VREDA 57

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF    +R+ F  +    GVG ++ + +LS +TA++ V S+  ++   + +IPG+ 
Sbjct: 58  QLLYGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVG 117

Query: 118 MKIASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            K A R++ E    LKG           D +  N E     S  +    A+SAL+ LGY 
Sbjct: 118 KKTAERLVIEMRDRLKGWGEGDLFTPASDAAASNAEVQQYSSARA-EDEAVSALIALGYK 176

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             QA   V  V+K E +      IIR ALR++
Sbjct: 177 APQAAKVVSQVVKPEMS---SENIIREALRSM 205


>gi|261405408|ref|YP_003241649.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10]
 gi|261281871|gb|ACX63842.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10]
          Length = 205

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  +Y+++DVQGV Y ++CP        K     T+F   H+R+D I L
Sbjct: 1   MIDFLRGQVVHLESEYIVLDVQGVGYRVFCP--NPYAFAKTEGTVTVFTHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G RVA+G+L   +   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118

Query: 121 ASRIMTELKGK 131
           A R++ +LK K
Sbjct: 119 AQRMILDLKDK 129


>gi|256788881|ref|ZP_05527312.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24]
 gi|289772769|ref|ZP_06532147.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24]
 gi|289702968|gb|EFD70397.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24]
          Length = 201

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 17/200 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +I+V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVATLAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ ELK   G+ I  +  V   +S   ++Q H            +AL+ LGY   +A
Sbjct: 120 AQKLLLELKDRLGEPIG-APAVGAPVSTGWRDQLH------------AALIGLGYATREA 166

Query: 178 TTAVVSVLKKEKNIADDSQI 197
             AV +V  + +      Q+
Sbjct: 167 DEAVSAVAPQAEAAGGTPQV 186


>gi|186477304|ref|YP_001858774.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815]
 gi|229560012|sp|B2JGU4|RUVA_BURP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|184193763|gb|ACC71728.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815]
          Length = 193

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++LID  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPGTGEKVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGIGARMALAVLSGMSVQELSQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AERLLL-------ELKGKLGADLGAM----AGAASQSDHASDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|329926780|ref|ZP_08281188.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5]
 gi|328938980|gb|EGG35348.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5]
          Length = 205

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  +Y+++DVQGV Y ++CP        K     T+F   H+R+D I L
Sbjct: 1   MIDFLRGQVVHLESEYIVLDVQGVGYRVFCP--NPYAFAKTEGTVTVFTHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G RVA+G+L   +   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118

Query: 121 ASRIMTELKGK 131
           A R++ +LK K
Sbjct: 119 AQRMILDLKDK 129


>gi|300934559|ref|ZP_07149815.1| Holliday junction DNA helicase RuvA [Corynebacterium resistens DSM
           45100]
          Length = 208

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 112/221 (50%), Gaps = 33/221 (14%)

Query: 1   MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQD 56
           MI  ++G +  +GL  DYV+++  GV Y  +C   T + +G +      FV T +  R+D
Sbjct: 1   MIASLRGTVIDKGL--DYVVVECSGVGY--HCHT-TPAIVGTLERGTEAFVLTTLVVRED 55

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+ F     RQ F+ LQ V GVGARVA+ ++S +T  EL  ++   ++K + + PG+
Sbjct: 56  AQTLYAFTDSDQRQTFLALQKVSGVGARVALAIMSVLTPAELAAAVAEGDAKTLQRAPGV 115

Query: 117 SMKIASRIMTELKGKAISLSSVVQ----------QDMSCVNKEQAHICSMPSFAINAISA 166
             ++A R++ +LKGK  +LSS V           Q +S   +EQ               A
Sbjct: 116 GKRLAERMVVDLKGKLGALSSEVSTPGAPSPDSPQGLSDSVREQVE------------EA 163

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIA--DDSQIIRLALRAI 205
           LV LG+ + +A + V   + + ++    D S ++R AL  I
Sbjct: 164 LVGLGFTEAKAASTVSQAVARTEDAGLLDASSLLRAALAQI 204


>gi|256026581|ref|ZP_05440415.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D11]
 gi|289764586|ref|ZP_06523964.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11]
 gi|289716141|gb|EFD80153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11]
          Length = 194

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 82/145 (56%), Gaps = 1/145 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145
           A  I+ +LKGK  +L+   ++ +S 
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV 144


>gi|197335439|ref|YP_002155714.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11]
 gi|226698745|sp|B5FCQ1|RUVA_VIBFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|197316929|gb|ACH66376.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11]
          Length = 207

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 4/192 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GN+       +LI+V G+ Y +  P+     L ++G    ++    +R+D   L
Sbjct: 1   MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +     +        D + ++     I S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180

Query: 177 ATTAVVSVLKKE 188
           A+  V  V K +
Sbjct: 181 ASKTVSQVAKPD 192


>gi|21673101|ref|NP_661166.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS]
 gi|25453273|sp|Q8KFR0|RUVA_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|21646174|gb|AAM71508.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS]
          Length = 201

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 108/207 (52%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +  +  +++V G+ Y+++    T   L   G    LF   ++R+D  +L
Sbjct: 1   MFAFLRGELVTVSREEAVVEVSGIGYLLHISSGTSRRLPPEGSQVRLFTHHYVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL + + Q F LL ++ GVG ++AM VLS ++  E+ E+I+    + +  I G+  K 
Sbjct: 61  FGFLDEEELQLFRLLLTIGGVGPKLAMAVLSGLSVGEIQEAIVANRPETLYGITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--AISALVNLGYGQDQAT 178
           ASRI+ EL+ K + +        +   +         +  +N  A++AL+ LG+ +  A 
Sbjct: 121 ASRIILELRDKILKIQPAASGKTAGAPQ---------ALQLNEDALAALMTLGFPKPAAQ 171

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+  +L+    ++ + +++R AL AI
Sbjct: 172 KAISGILETSPGLSVE-EVVRAALIAI 197


>gi|297569179|ref|YP_003690523.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925094|gb|ADH85904.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 215

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 19/220 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D +++ V GV Y ++ P      L  +G+   L+++T +R+D   L
Sbjct: 1   MIASLQGKLAHKGPDSLVLQVGGVGYEVFLPASRHDRLPAVGEELFLYIQTVVREDSFNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL  V GVG R+AM +L+      L  +II  +   + ++PG+  K 
Sbjct: 61  YGFPDSREKRMFQLLLGVSGVGPRLAMNILAAAEPAALSRAIIAGDIVFLKKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--------SMPSFAINAISALVNLGY 172
           A R+  EL  K     +      + V    A           + PSF  +A SAL+NLGY
Sbjct: 121 AERLCLELGDKMEFFPTATTDAGTVVGPGAALSPSSAAAADFNEPSFQ-DAYSALLNLGY 179

Query: 173 GQDQATTAVVSVLKKEKNIADDS------QIIRLALRAIS 206
              QA  A    L+  ++ AD S      +++R ALR+++
Sbjct: 180 PASQARAA----LEGLRSAADVSLELPVEELLRQALRSLA 215


>gi|269956459|ref|YP_003326248.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305140|gb|ACZ30690.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 207

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 7/185 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +  D  +IDV GV Y+++    TL+ L + G+   LF    +R++ + L
Sbjct: 1   MIASLTGVVEHVSLDRAVIDVGGVGYLVHATPGTLAGL-RTGERARLFTTMVVREESMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F  D +R  F   QSV GVG R+A+ VL+  T   +  ++  Q+ K + ++PGI  K+
Sbjct: 60  YAFTDDDERALFETAQSVSGVGPRIALAVLAVHTPDAVRRAVHTQDVKALTRVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK   L +      +                   + ALV LGY    A  A
Sbjct: 120 AQRILLELGGK---LGAPTGDGAAGSGATAGTGGDQRG---KVVEALVGLGYPAKTADDA 173

Query: 181 VVSVL 185
           V  VL
Sbjct: 174 VARVL 178


>gi|90134315|sp|Q6F992|RUVA_ACIAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 201

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++  F  L  V GVG ++A+G+LS ++    + +I   +   + ++PG+  K 
Sbjct: 60  YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L SV     S V   Q    S    A  A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKAL-SVQATTGSTVTSAQIQFSSNSPIA-EAEAALQSLGYKPIEAQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V       AD   +IR AL+++
Sbjct: 178 IAAVKADYTEAAD---LIRAALKSM 199


>gi|153809430|ref|ZP_01962098.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185]
 gi|149128016|gb|EDM19238.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185]
          Length = 201

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  L     +ID  GV Y     + T S + GK    C LF+   +R+D   
Sbjct: 1   MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KTCKLFIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++ +ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQEREIFLLLISVSGIGGNTARMILSALSPSELVSVISAENANLLKTVKGIGLK 118

Query: 120 IASRIMTELKGK-------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
            A R++ ELK K       A+  ++     +   N E             A++AL  LG+
Sbjct: 119 TAQRLIVELKDKIKTVGMAAVGGTTSAGMLLQSANAEVQE---------EAVAALTMLGF 169

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
               +   V++VLK+E   A   ++I+LAL+
Sbjct: 170 AAAPSQKVVLAVLKEEPE-APVEKVIKLALK 199


>gi|150004217|ref|YP_001298961.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus ATCC
           8482]
 gi|254884765|ref|ZP_05257475.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA]
 gi|294774978|ref|ZP_06740508.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510]
 gi|319644172|ref|ZP_07998697.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp.
           3_1_40A]
 gi|166230518|sp|A6L0X5|RUVA_BACV8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149932641|gb|ABR39339.1| Holliday junction DNA helicase ruvA [Bacteroides vulgatus ATCC
           8482]
 gi|254837558|gb|EET17867.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA]
 gi|294451187|gb|EFG19657.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510]
 gi|317384294|gb|EFV65265.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp.
           3_1_40A]
          Length = 197

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  +    V++D  G+ Y I   + T S +    +   L++   +R+D   L
Sbjct: 1   MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAIQNQSN-TKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K      +    +  VN E             A++AL  LG+ Q  A+  
Sbjct: 120 AQRIIVDLKDK------IATSGVETVNSEMFANPGNTEIHDEAVAALTMLGFAQ-AASQK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           VV+ + KE+  A   ++I+LAL+
Sbjct: 173 VVAAILKEEPAAPVEKVIKLALK 195


>gi|300723091|ref|YP_003712389.1| Holliday junction helicase subunit A [Xenorhabdus nematophila ATCC
           19061]
 gi|297629606|emb|CBJ90209.1| Holliday junction helicase, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 205

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L +IG    LF +  +R+D   L
Sbjct: 1   MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQQAILFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N   A     S       A +ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPAAAKQTNSDADIEAEAAAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V+K     AD   +IR ALRA
Sbjct: 181 RMVSKVVKPG---ADCETLIREALRA 203


>gi|262404190|ref|ZP_06080745.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586]
 gi|262349222|gb|EEY98360.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586]
          Length = 204

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 109/209 (52%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A I S+P+ A N    AISAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSVPALAQNAQDEAISALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  + K   +     ++IR AL+++
Sbjct: 178 ASKAVSQIAKAGMSC---EELIREALKSM 203


>gi|149375111|ref|ZP_01892883.1| Holliday junction DNA helicase motor protein [Marinobacter algicola
           DG893]
 gi|149360475|gb|EDM48927.1| Holliday junction DNA helicase motor protein [Marinobacter algicola
           DG893]
          Length = 210

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 17/214 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQI 58
           MIG+I+G +        L++  G+ Y +  P  T   L + G    L + TH  +R+D  
Sbjct: 1   MIGRIRGILIEKSPAQALVECAGLGYEVDIPYTTFFNLPETG--AELVLHTHFVVREDAQ 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S LDR  F LL  V GVG ++A G+LS + A + +  +  +++  + ++PG+  
Sbjct: 59  SLYGFSSRLDRDLFRLLIKVNGVGPKLAAGILSGLDANQFIRCVEARDANALVKLPGVGK 118

Query: 119 KIASRIMTE-------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           K A R++ E       L+G+ I  S          N   A + +       A +AL+ LG
Sbjct: 119 KTAERLLIEMTDRIGQLEGQFIPASPNATVTSDSAN---AGVVAGHDPREEAEAALIALG 175

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           Y   +A+ A+  V ++  +     ++IRLALRA+
Sbjct: 176 YKPQEASKAISKVAEESMS---SQELIRLALRAM 206


>gi|332878042|ref|ZP_08445772.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684004|gb|EGJ56871.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 200

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  +KG I  L     +ID  GV Y +   + T S L GK      L+V   +R+D   
Sbjct: 1   MIEYVKGQIAELTPAIAVIDCHGVGYGLNISLNTFSALQGK--QEAKLYVYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F+LL SV G+G   A  +LS +T  ELV  I   N K++  + GI +K
Sbjct: 59  LYGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LK K   ++SV  +  +                  A++AL  LG+    +  
Sbjct: 119 TAQRIIVDLKDK---IASVEIEGTAAPGTSATAATGHSEILEEAVAALTMLGFPPAPSQK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
             +++LK+E   A + ++I+LAL+
Sbjct: 176 VALAILKEEPEAAVE-RVIKLALK 198


>gi|322382934|ref|ZP_08056766.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153054|gb|EFX45512.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 207

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DYV+IDV GV Y ++C         + G+  TLF+  H+R+D   L
Sbjct: 1   MIDYLRGQLAVREMDYVVIDVHGVGYQVFCS-NPFGISAREGEEVTLFIHYHVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F  L  V G+G +VA+G+L+      ++ +I  +N   + ++PGI  K 
Sbjct: 60  FGFTTREEQTLFRKLIEVSGIGPKVALGILTGGRPDAVIAAIQQENVGFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   L + +  +++ +  E A   SM      A  AL+ LGY + +A   
Sbjct: 120 AQRIILDLKDKLGLLPASIVDEVAVLTAE-AERNSMEGCWAEAKQALLALGYTETEADRT 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K       + +LAL+A+
Sbjct: 179 WHLIQKDVKPADPVDTVTKLALKAL 203


>gi|90417110|ref|ZP_01225038.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2207]
 gi|90331126|gb|EAS46382.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2207]
          Length = 199

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 107/209 (51%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LIDVQGV Y +   + T   +  +G+  TL     +R+D  +L
Sbjct: 1   MIGRLQGKVIEKQAPDLLIDVQGVGYEVLVSLNTFFGVPGVGEITTLHTHFVVREDVQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISM 118
           +GF +  +RQ F  L  V GVG ++A+ +LS ++A +   +I + N+ +  + ++PG+  
Sbjct: 61  YGFGTQSERQLFRHLIKVNGVGPKMALAILSGMSANDF--AICVHNNDIATLVKLPGVGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ E++ K      +   D +          + P  +  A SAL+ LGY    A 
Sbjct: 119 KTAERLLIEMRDK------IGDMDATAAGSATGAQEAKPDISQEAESALIALGYKPADAA 172

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207
             +  V  +  N  D  ++IRLAL+++  
Sbjct: 173 KIISRVATESVN--DAGELIRLALKSMGS 199


>gi|309789628|ref|ZP_07684209.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6]
 gi|308228364|gb|EFO82011.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6]
          Length = 198

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 113/208 (54%), Gaps = 20/208 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G +  +  D+++I+  GV +++Y P   L   G + +  T+F+ THM  R+D +
Sbjct: 1   MIASLRGTLIHIGSDHLVIETGGVGWLVYAPRSVLGACGALNE--TIFLYTHMIVREDAL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF +   R  F  L SV GVG +V + +LS  +  ++   +   N+  +A++PGI  
Sbjct: 59  LLYGFQTLEQRALFESLLSVSGVGPKVGLSLLSAGSPDDIRLMVAQNNTTALARVPGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA--LVNLGYGQDQ 176
           K A R++ ELKGK          D+  +      + + PS A+NA  A  LV+LGY   +
Sbjct: 119 KTAERLVLELKGK---------LDLKGLPTAAGGVAAAPS-ALNAELAELLVSLGYSSAE 168

Query: 177 ATTAVVSVLKKEKNIADDSQI-IRLALR 203
           A+ AV S+     +  +D ++ +RLALR
Sbjct: 169 ASAAVASL---PADAPEDLEVRLRLALR 193


>gi|170693379|ref|ZP_02884538.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M]
 gi|170141534|gb|EDT09703.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M]
          Length = 193

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGAM----AGTVSASGHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           V       KN+      S+ I+LAL+A+S
Sbjct: 170 V-------KNVPAGTGVSEGIKLALKALS 191


>gi|257066397|ref|YP_003152653.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM
           20548]
 gi|256798277|gb|ACV28932.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM
           20548]
          Length = 195

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 8/176 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G++  + ED  +I+   + Y+I+  ++TLS + +I +   ++    +R+D I L
Sbjct: 1   MISYIIGHVRSIKEDSFIIENNNMGYLIFSSLKTLSNI-EINNEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F LL SV  +G ++AMG+LS I+  E+  +II  +   +    GI  K 
Sbjct: 60  FGFFTKDELEMFTLLTSVSTIGPKIAMGILSSISVNEIKTAIINNDIDKLTVAKGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           ASRI+ EL  K   +  V  +++   +K+   I         A  AL+NLGY ++ 
Sbjct: 120 ASRIILELVDKVKKMDFVPVENIELNSKDNEEIDV-------AREALLNLGYEKND 168


>gi|110636455|ref|YP_676662.1| Holliday junction DNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354887|sp|Q11Z44|RUVA_CYTH3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110279136|gb|ABG57322.1| Holliday junction DNA helicase subunit RuvA [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 199

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +      +V++DVQG+ Y I   + T S L  + +   +    H+++D   L
Sbjct: 1   MIAYIEGKLAHKDPTFVVVDVQGIGYHIRVSLHTFSQLKDL-ERVKIHTFLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++++ F+ L S+ G+G   A+ VLS +   EL E+I  ++ K I  + GI +K 
Sbjct: 60  FGFADLMEKEMFLHLTSISGIGPGTALVVLSSMNPIELKEAIAREDVKTIQSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK K       +++D  ++  + +Q    S  S    A++AL+ LG+ +  A 
Sbjct: 120 AQRVILELKDK-------MKKDALLAGSDSKQNFSVSHNSIRSEALTALITLGFTKTVAE 172

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
             +  +LK   N      +I+ AL+
Sbjct: 173 KNLDLILKGNSNSFTLEDLIKQALK 197


>gi|260102901|ref|ZP_05753138.1| crossover junction endoribonuclease subunit A [Lactobacillus
           helveticus DSM 20075]
 gi|260083290|gb|EEW67410.1| crossover junction endoribonuclease subunit A [Lactobacillus
           helveticus DSM 20075]
          Length = 196

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 10/161 (6%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           Y+++DV GV Y +Y P  T     K GD   +F+E  +R   I L+GF S+ D++ F+ L
Sbjct: 16  YIVVDVNGVGYKVYSP--TPFAYQK-GDKAKIFIEQVVRDTGITLYGFQSEDDKELFLKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV G+G + A+ +++   A  L E+I     K + + PG+  K AS+I+ +LKGK   L
Sbjct: 73  LSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---L 129

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
              V + +   ++EQ +I   P    +A+ AL+ LGY Q +
Sbjct: 130 RDYVAR-LDRQDEEQGNI---PPALNDALLALIALGYTQKE 166


>gi|302874957|ref|YP_003843590.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
 gi|307690425|ref|ZP_07632871.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
 gi|302577814|gb|ADL51826.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
          Length = 194

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 15/187 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+ +DY++I+  G+ Y I+    T++ L  I     ++++  +R+D I L
Sbjct: 1   MYEYIKGIYKGIKKDYLIIENNGIGYKIFTSGGTIAALPSIDKEVFIYLKQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F +L ++ GVG + A+ +LS  T   L  +I   +   I + PGI  K 
Sbjct: 61  YGFATQEELELFTMLLNINGVGTKAALSLLSIGTVNNLKYAIATSDENFITKAPGIGKKT 120

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ ELK    K + LS   +  ++ V            +   A+ AL+ LGYG+ +A
Sbjct: 121 AQRIILELKDKLSKEVPLSHTSENIITNV------------YVDEALEALIALGYGEKEA 168

Query: 178 TTAVVSV 184
             A+ +V
Sbjct: 169 EKAIANV 175


>gi|187935379|ref|YP_001885221.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str.
           Eklund 17B]
 gi|229560022|sp|B2TMZ1|RUVA_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187723532|gb|ACD24753.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 198

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 104/185 (56%), Gaps = 7/185 (3%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG   G+ +DY++I+  G+ Y I+    T+S +   G+   L++E  +R+D I L+GF 
Sbjct: 5   IKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKLYIEQIVREDFIGLYGFE 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S  + + F +L S+ GVGA+ A+ +LS      L  +II  + K + +  GI  K A+RI
Sbjct: 65  SLEELEMFKMLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGVGIGKKTAARI 124

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVS 183
           + ELK K  +      + ++C++ E   +    S A++ A+SAL++LGY + +A   +  
Sbjct: 125 ILELKDKLKT-----DELLNCID-EFDDVTQDNSLAVSEALSALISLGYTEKEAEKVLRD 178

Query: 184 VLKKE 188
           V K E
Sbjct: 179 VDKSE 183


>gi|225023395|ref|ZP_03712587.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC
           23834]
 gi|224943873|gb|EEG25082.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC
           23834]
          Length = 193

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G +       V+IDV GV Y     ++T   L  +G+  +L+ +  +R+D   L
Sbjct: 1   MISKLTGKLIEAIPPQVVIDVNGVAYEADVSMQTFYTLPPVGETVSLYTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL  +I  ++ K ++  PGI  K 
Sbjct: 61  FGFGSHSERNTFRQLIKVSGIGAKTALGILSAMNADELAAAIAAEDIKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK  + + V  Q  +        I          +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLTTFNGVQTQLAAQAGDSSEDI----------VSTLLALGYNEKEARAA 170

Query: 181 VVSVLKKEKNIADDSQI---IRLALR 203
                   K I  D+++   +RLAL+
Sbjct: 171 T-------KGIPADTEVGEGVRLALK 189


>gi|50085685|ref|YP_047195.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. ADP1]
 gi|49531661|emb|CAG69373.1| holliday junction helicase subunit A [Acinetobacter sp. ADP1]
          Length = 204

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 4   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++  F  L  V GVG ++A+G+LS ++    + +I   +   + ++PG+  K 
Sbjct: 63  YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L SV     S V   Q    S    A  A +AL +LGY   +A  A
Sbjct: 123 AERLMIELRDRFKAL-SVQATTGSTVTSAQIQFSSNSPIA-EAEAALQSLGYKPIEAQKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V       AD   +IR AL+++
Sbjct: 181 IAAVKADYTEAAD---LIRAALKSM 202


>gi|183601646|ref|ZP_02963016.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683820|ref|YP_002470203.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241190856|ref|YP_002968250.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196262|ref|YP_002969817.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|254766944|sp|B8DUE8|RUVA_BIFA0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183219252|gb|EDT89893.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621470|gb|ACL29627.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249248|gb|ACS46188.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250816|gb|ACS47755.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793845|gb|ADG33380.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 207

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 18/213 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG +E +     ++DV GV + +  P   L+ +  +G    ++    + QD I L
Sbjct: 1   MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    ++ F+ LQ V GVG +VA+ +LS +   +L ++I   + K +++ PG+  K 
Sbjct: 60  FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG +I +  +   + +   +               +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-SIDVDKIETGEPTSTQR-----IPTDKGVEQVVEGLMSLGWKQADAQQA 173

Query: 181 VVSVLK--------KEKNIADDSQIIRLALRAI 205
           V SV+         +E N+     ++RLAL ++
Sbjct: 174 VDSVISSSGIALPLEEGNVP---TVLRLALTSL 203


>gi|153810824|ref|ZP_01963492.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174]
 gi|149833220|gb|EDM88302.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174]
          Length = 203

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 10/189 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +    E+ V+++  G+ Y I+    ++  + +I     +     +R+D ++L
Sbjct: 1   MISFIRGLVADTTENAVILENNGIGYEIFMTGSSIEQVSRIDGEVKIHTYFQVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G + A+GVL+ +TA EL  +++  + K I++ PGI  K 
Sbjct: 61  YGFLSKDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A +++ ELK K + L    ++ ++     +    S+  F I+     A  AL+ LGY   
Sbjct: 121 AQKLILELKDK-LKLEDAFEKKLA----HEQEAASVSGFLIHDGRQEAAEALIALGYSST 175

Query: 176 QATTAVVSV 184
            A  AV  V
Sbjct: 176 DAMKAVRKV 184


>gi|311742330|ref|ZP_07716139.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium
           marinum DSM 15272]
 gi|311313958|gb|EFQ83866.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium
           marinum DSM 15272]
          Length = 199

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 24/213 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D V++DV GV Y+  C   T++ L +IG    L     +R+D + +
Sbjct: 1   MIASLRGTVAAVSLDSVVLDVGGVGYLTRCTPGTIAGL-RIGQEAQLATTLVVREDSMTV 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F L+Q+  GVG +VA+ +L+ +    L ++I   +   +  +PGI  K 
Sbjct: 60  YGFADATERDMFELVQTASGVGPKVALAMLAVLDPDRLRQAIAQADHSTLMSVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK + + L+       +   +EQ H             AL+ LG+    A  A
Sbjct: 120 AERIVVELKDR-VGLAGSAAPTGAPAWREQVH------------EALLGLGWPARDAERA 166

Query: 181 VVSVLKKEKNIADD-------SQIIRLALRAIS 206
           V +V     ++ADD       S ++R ALR+++
Sbjct: 167 VDNV---AADLADDPGAAADVSTLLRDALRSLA 196


>gi|213963573|ref|ZP_03391826.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena
           Capno]
 gi|213953853|gb|EEB65182.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena
           Capno]
          Length = 194

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      +V+ID  GV Y +   + T S L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLIEKNPTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA  +  +II  +   I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLLSVSGVGASTARTMLSSLTAAHVRSAIINGDVATIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L     QD      E+  I ++ +    A++AL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKL-----QDF-----EEVSINTLNTNKEEALAALEVLGFVRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V +++K         +II+ AL+
Sbjct: 170 VDTIVKLNNEELSVEEIIKQALK 192


>gi|288555342|ref|YP_003427277.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4]
 gi|288546502|gb|ADC50385.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4]
          Length = 205

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 16/180 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +  +   YV++D QG+ Y IYCP        ++ +   ++   H+R+D IRL
Sbjct: 1   MIDYINGVLVDIETRYVVLDHQGLGYQIYCP-NPYQFSKQLDEKVKIYTYQHVREDLIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L +V G+G + A+ +L+      +V +I  ++   + + PG+  K 
Sbjct: 60  FGFESKSERALFEKLLNVSGIGPKGALAILASGQPEHVVRAIEEEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSS--------VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +I+ +LKGK    S         +V + M+ VNKE   +         A+ AL  LGY
Sbjct: 120 ARQIILDLKGKLDEFSPNLFNESTGLVSEKMTKVNKENTELEE-------ALEALRALGY 172


>gi|306836241|ref|ZP_07469223.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           accolens ATCC 49726]
 gi|304567833|gb|EFM43416.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           accolens ATCC 49726]
          Length = 202

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y      +TL  L + G+   +     +++D + L
Sbjct: 1   MIAALRGEVLHIGLDHGVIECSGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179
           A R+  ELK K    +     D +     +A     P   +++++ AL+ LG+  ++A  
Sbjct: 120 AQRLTLELKDKVKRFAGTPAPDAA----PEATGAGGP--VVDSVTEALLGLGF-TEKAAR 172

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
            VV     E   AD S ++R AL
Sbjct: 173 PVVEAAYAEAPAADTSTLLRAAL 195


>gi|53804471|ref|YP_113686.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str.
           Bath]
 gi|81682299|sp|Q609L1|RUVA_METCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|53758232|gb|AAU92523.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str.
           Bath]
          Length = 201

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +       +LIDVQG+ Y +  P+ T   L +IG    L+    +R+D   L
Sbjct: 1   MIGFIRGLLVAKRAPSLLIDVQGLGYELDAPMSTFYNLPEIGAEVRLYTHLQIREDAHSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  V G+GA++A+ +LS I+  +    +  Q+S  + ++PGI  K 
Sbjct: 61  FGFGTEAERGLFRSLIRVSGIGAKLALAILSGISVDDFRACVERQDSARLVRLPGIGKKT 120

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ EL+ +  I + S+     +                  A+SAL+ LG+   +A T
Sbjct: 121 AERLIIELRDRLDIGVPSLAPASFAGGAAPLPAADPA----DEAVSALIALGFKPQEANT 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +V+    E   A+D  +IR AL++
Sbjct: 177 -LVARQAAEGRSAED--LIRAALQS 198


>gi|291530842|emb|CBK96427.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum
           70/3]
          Length = 199

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +ID  GV Y       TLS L KIG+   L     +R+D + L
Sbjct: 1   MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +   F +L SV GVG + A+ +LS +T       +   + K +   PGI  K 
Sbjct: 60  FGFYDAAELNCFKMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFA-INAISALVNLGYGQDQAT 178
           A RI+ ELK K      V +QD++   K  A  I + PS     A+SAL+ LGY   +A 
Sbjct: 120 AERIVLELKDK------VSKQDVAAGVKGSAVPIVAAPSNTYAEAVSALMVLGYSNGEAA 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +A+  +       A   ++IR  L+ ++
Sbjct: 174 SALSGL----DPSAPSDELIRAGLKKLA 197


>gi|90022179|ref|YP_528006.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus
           degradans 2-40]
 gi|122996073|sp|Q21HN5|RUVA_SACD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89951779|gb|ABD81794.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus
           degradans 2-40]
          Length = 207

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 11/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +      ++LID+ GV Y +  P+ T   L  +G+   L     + +   +L
Sbjct: 1   MIGRLTGILAEKKAPHLLIDIGGVGYDVIAPMTTFYRLPALGEKAVLHTHFSVSETSQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  DR+ F +L  V GVG ++A+G++S + +++  + ++  N   + ++PG+  K 
Sbjct: 61  FGFSSQQDRELFRMLIKVNGVGPKLAVGIMS-MESSDFAKCVLDGNLTALVKLPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAINAI-----SALVNLGYGQ 174
           A R++ +++ +  +L +   +       E A I  + P    N I     SAL+ LGY  
Sbjct: 120 AERLLVDMRDRVKALDTTPSE--HSPTGEGAGIVRVDPVINTNVIIADAESALIGLGYKP 177

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +A  AV +        ++D  +IR AL+ +
Sbjct: 178 TEAAKAVSAAYNDTITTSED--LIRAALKGM 206


>gi|237744846|ref|ZP_04575327.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1]
 gi|229432075|gb|EEO42287.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1]
          Length = 194

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 82/145 (56%), Gaps = 1/145 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ G+ Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145
           A  I+ +LKGK  +L+   ++ +S 
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV 144


>gi|289209177|ref|YP_003461243.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix]
 gi|288944808|gb|ADC72507.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix]
          Length = 201

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI +++G +     + V+ID  GV Y +  P+ TL+ L + G   T+ + TH+  R+D  
Sbjct: 1   MIARLEGTLISREVNGVVIDAGGVGYEVEVPLSTLAALPEPG--ATVVLTTHLVVREDAH 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +LFGF+   DR  F  L  V G+GA++A+ +LS     EL   I   +   +A++PGI  
Sbjct: 59  QLFGFMHKRDRDLFRRLIRVNGIGAKLALAMLSTYAGDELAGLISGGDVTGLAKVPGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--AISALVNLGYGQDQ 176
           + A R++ EL  +      + +   +           +P  A++  A++AL +LGY +  
Sbjct: 119 RTAERVVLELGER------LAEMGFAAAPGGADAGADIPGAAMDGEALAALESLGYPRAS 172

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A   V +V  +  ++     ++RLALRA
Sbjct: 173 AEKMVAAVRDQADSV---ESLVRLALRA 197


>gi|59711558|ref|YP_204334.1| Holliday junction DNA helicase motor protein [Vibrio fischeri
           ES114]
 gi|71649480|sp|Q5E6A0|RUVA_VIBF1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|59479659|gb|AAW85446.1| component of RuvABC resolvasome, regulatory subunit [Vibrio
           fischeri ES114]
          Length = 207

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 4/192 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GN+       +LI+V G+ Y +  P+     L ++G    ++    +R+D   L
Sbjct: 1   MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +     +        D + ++     I S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180

Query: 177 ATTAVVSVLKKE 188
           A+  V  + K +
Sbjct: 181 ASKTVSQIAKPD 192


>gi|291557651|emb|CBL34768.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum
           V10Sc8a]
          Length = 199

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +ID  GV Y       TLS L KIG+   L     +R+D + L
Sbjct: 1   MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +   F +L SV GVG + A+ +LS +T       +   + K +   PGI  K 
Sbjct: 60  FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFA-INAISALVNLGYGQDQAT 178
           A RI+ ELK K      V +QD++   K  A  I + PS     A+SAL+ LGY   +A 
Sbjct: 120 AERIVLELKDK------VSKQDVAAGVKGSAVPIVAAPSNTYAEAVSALMVLGYSNGEAA 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +A+  +       A   ++IR  L+ ++
Sbjct: 174 SALSGL----DPSAPSDELIRAGLKKLA 197


>gi|306822725|ref|ZP_07456103.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium
           dentium ATCC 27679]
 gi|304554270|gb|EFM42179.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium
           dentium ATCC 27679]
          Length = 205

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 20/213 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +     LI+V GV Y I  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASM-HAGQEVKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178
           A +I+ ELKG +I LS +         +  A + S P  + +   +  L++LG+ Q  A 
Sbjct: 120 AQKIILELKG-SIDLSQI---------ETAASVISRPEDTGSEQVVEGLISLGWRQQDAL 169

Query: 179 TAVVSVLKKEKNIA------DDSQIIRLALRAI 205
            AV  V +   +IA      D  ++++LAL ++
Sbjct: 170 HAVQEVCRS-NDIATPLSNEDVPRVLKLALTSL 201


>gi|256375826|ref|YP_003099486.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827]
 gi|255920129|gb|ACU35640.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827]
          Length = 198

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +++V GV + +     TL  L + G+   L     +R+D + L
Sbjct: 1   MISSLRGQVLSIGLDHAVVEVGGVGFAVQATPATLGSL-RRGEEAVLSTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     RQ F LLQ+V G+G R+A+  L+ +   +L  ++   +  V+ Q+PGI  K 
Sbjct: 60  FGFADADSRQLFGLLQTVSGIGPRLALATLAVLEPEKLRAALAEGSVSVLTQVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L++    D          + ++       + AL+ LG+   QA TA
Sbjct: 120 AERLVIELRDKVGQLATAPASD---------GVVAVGRVRDQVVEALLGLGFPAKQAETA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VL ++ ++   S ++R AL  + 
Sbjct: 171 VDGVLAEDPSLG-TSVVLRKALSGLG 195


>gi|315224590|ref|ZP_07866416.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           ochracea F0287]
 gi|314945456|gb|EFS97479.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           ochracea F0287]
          Length = 194

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      YV+ID  GV Y +   + T S L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLVEKNPTYVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA ++  +II      I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGEVATIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L    +  M+ V+  +            A++AL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVPMNAVSTHKEE----------ALAALEVLGFMRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++K         +II+ AL+
Sbjct: 170 VDIIIKSSSEELSVEEIIKQALK 192


>gi|260494643|ref|ZP_05814773.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33]
 gi|260197805|gb|EEW95322.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33]
          Length = 194

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 82/145 (56%), Gaps = 1/145 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ G+ Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145
           A  I+ +LKGK  +L+   ++ +S 
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV 144


>gi|160947139|ref|ZP_02094306.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270]
 gi|158446273|gb|EDP23268.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270]
          Length = 200

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           I G ++ +Y DY++ID  G+ Y I+    TL  +  +GD+ T++ +  +++D + LFGF 
Sbjct: 5   ISGELKFIYNDYIVIDNGGIGYKIFTSNNTLFNV-TVGDYYTIYTDYIVKEDYVALFGFK 63

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +   F LL SV  +G +VA G+LS ++   L  +I+  ++  +A   G+  K A +I
Sbjct: 64  TMDELSMFKLLVSVNSIGPKVACGILSSMSVDSLKLTIVNGDAVALATAKGVGKKTAQKI 123

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI--SALVNLGYGQDQATTAVV 182
           + ELK K IS+ S+  +D+S +  E + + S        +   AL+NLG+ ++     + 
Sbjct: 124 ILELKDK-ISIDSISSKDISGM--EASTLDSGKDLEKRELVSDALINLGFMKNDIERFLS 180

Query: 183 SVLKKEKNIADDSQIIRLALRAI 205
           S+   E  I D   II+L+++ +
Sbjct: 181 SINIDEMEIED---IIKLSMKKL 200


>gi|289178595|gb|ADC85841.1| RuvA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 232

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 18/213 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG +E +     ++DV GV + +  P   L+ +  +G    ++    + QD I L
Sbjct: 26  MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 84

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    ++ F+ LQ V GVG +VA+ +LS +   +L ++I   + K +++ PG+  K 
Sbjct: 85  FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 144

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG +I +  +   + +   +               +  L++LG+ Q  A  A
Sbjct: 145 AQKIILELKG-SIDVDKIETGEPTSTQR-----IPTDKGVEQVVEGLMSLGWKQADAQQA 198

Query: 181 VVSVLK--------KEKNIADDSQIIRLALRAI 205
           V SV+         +E N+     ++RLAL ++
Sbjct: 199 VDSVISSSGIALPLEEGNVP---TVLRLALTSL 228


>gi|332663957|ref|YP_004446745.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332771|gb|AEE49872.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 196

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++GNI      Y++++  GV Y+++  + T S + K  +   +    ++++D   L
Sbjct: 1   MITYLRGNITQKTPTYIVVETAGVGYLVHISLHTYSQIEK-KEEVKILTHLNIKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R  F  L SV GVG   A  +LS ++  EL  +II +  +V   + GI  K+
Sbjct: 60  YGFAEEAERSLFRHLISVSGVGPTTAQIMLSSLSPDELRAAIIGEQEQVFRAVKGIGPKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K I  S     D+      Q +          A+SALV LG+ Q  A   
Sbjct: 120 AKRIILDLKDKLIKDSG----DLPLTFPSQNNTIRE-----EALSALVALGF-QKIAVQK 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
            ++ L K++ I +  Q+I+LALR +S 
Sbjct: 170 ALNHLLKDQAIQNVEQLIKLALRELSA 196


>gi|262171190|ref|ZP_06038868.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451]
 gi|261892266|gb|EEY38252.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451]
          Length = 204

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVFCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A I S P+ A N    AISAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|147677361|ref|YP_001211576.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273458|dbj|BAF59207.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 211

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 12/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +    V++DV G+ Y +  P+  L+ L   G+   L+    +R++   L
Sbjct: 16  MISYIKGKLAEVQAGAVVLDVGGIGYRVQVPLSVLNKLPARGEDVLLYTHLAVREEGFFL 75

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +  +F+ L  V G+G +VA+ +L+  +  EL   II  ++  + ++PG+  K 
Sbjct: 76  YGFSDQNELGFFLKLLGVSGIGPKVALAILTIFSPDELGRIIIGGDTAALTRVPGVGKKT 135

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K ++ +++ ++ +S  +  +A          +A+ AL  LGY   +A  A
Sbjct: 136 AGRIILELKDK-VTETTLEREPLSGRSGVEA----------DAVEALEALGYTAAEALKA 184

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  VLK        ++I+R ALR
Sbjct: 185 VKEVLKGPGQ-PSAAEIVREALR 206


>gi|302517991|ref|ZP_07270333.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78]
 gi|318057102|ref|ZP_07975825.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actG]
 gi|333028331|ref|ZP_08456395.1| putative holliday junction DNA helicase RuvA [Streptomyces sp.
           Tu6071]
 gi|302426886|gb|EFK98701.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78]
 gi|332748183|gb|EGJ78624.1| putative holliday junction DNA helicase RuvA [Streptomyces sp.
           Tu6071]
          Length = 206

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 15/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V G+   + C   TLS L +IG+   +     +R+D + L
Sbjct: 1   MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+ ++   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ ELK   G+ +   ++  Q  +            P +     +ALV LGY   +A
Sbjct: 120 AQKLILELKDRLGQPLGTGTLGAQRRAAAGP--------PPWTEQLHTALVGLGYQPREA 171

Query: 178 TTAVVSVLKK---EKNIADDSQIIRLALRAIS 206
             AV +V  +   ++ + +   ++R AL+ ++
Sbjct: 172 EEAVEAVTPQAEAQEGVPEIGPLLRAALQTLN 203


>gi|6685961|sp|Q9ZNJ6|RUVA_CLOHI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3892649|dbj|BAA34545.1| ruvA [Clostridium histolyticum]
          Length = 197

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 103/185 (55%), Gaps = 8/185 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG   G+ ++Y++I+   + Y I+    T++ +  IG+   L++   +R+D I L+GF 
Sbjct: 5   IKGTYMGINKEYIVIENGDIGYKIHSSGYTIANMPNIGEHIMLYLTQIVREDFIGLYGFG 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S  + + F  L +V G+GA+ ++ +LS      L  +I+L++ K++ + PGI  K A RI
Sbjct: 65  SKEELELFNKLLTVNGIGAKASLSLLSITNVENLKRAIVLEDEKLLIKAPGIGKKTAQRI 124

Query: 125 MTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183
           + ELK K  ++L   +Q D + + K  + I         A  AL++LGY + +   A+ +
Sbjct: 125 ILELKDKLDVNLDEGIQTDSNDI-KVSSKILE------EAKEALMSLGYSEKECEKALKN 177

Query: 184 VLKKE 188
           V +KE
Sbjct: 178 VEEKE 182


>gi|326382127|ref|ZP_08203819.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198857|gb|EGD56039.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 201

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +I  + G +  +  D+ +++  GV Y +     TL  L K G    L     +R+D + L
Sbjct: 5   VIASVSGEVIDIALDHAVVECAGVGYKVLATPPTLGSL-KRGGHVRLLTSMMVREDSMTL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM  L+ +    L  ++   ++K +  +PGI  ++
Sbjct: 64  YGFTDPEARDLFGLLQTVTGVGPRLAMATLAVLEPDSLRRALAESDAKALTTVPGIGKRV 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  + S+             A +            ALV LG+ +  A  A
Sbjct: 124 AERLVVELRDKVTAGSAGAVPGAPVAAGAGAQVT----------EALVGLGFTEGAAQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL  +   AD S ++R AL A+
Sbjct: 174 VAAVLADDPG-ADSSSLLRSALTAL 197


>gi|239907719|ref|YP_002954460.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1]
 gi|259495640|sp|C4XIJ9|RUVA_DESMR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239797585|dbj|BAH76574.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1]
          Length = 202

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +    + + +++   GV Y +  P    + L   G   +LFV T +R+D + 
Sbjct: 1   MIGYLEGRVVARRDRFAIVLTPGGVGYELELPTPVAAALPAPGGQVSLFVHTVVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  DR+ F  L  +  +G R A+ +LS  TA +L+  +   +++ + ++PGI  K
Sbjct: 61  LFGFASLDDRETFRTLIGISKLGPRTALAILSHFTADDLLRVVASGDAEALVRVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQ 176
            A RI  EL  K           +           S+P     A + ++ L NLGY + +
Sbjct: 121 SAQRIFIELSYK-----------LEGRAPAAGLAPSVPIPGGVAGDVVAGLTNLGYPEPE 169

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           A      VL+ E ++ D +  +R AL+ ++ 
Sbjct: 170 ARQVAAEVLEAEPDL-DVAAALRQALKRLAS 199


>gi|86157379|ref|YP_464164.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|123750528|sp|Q2IPJ6|RUVA_ANADE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85773890|gb|ABC80727.1| Holliday junction DNA helicase subunit RuvA [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 197

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 12/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I    +D+ ++DV GV Y+++    +L+ L   G+   L V TH+R+D + L
Sbjct: 1   MIARLAGRIAEKRDDHAIVDVGGVGYLVHVSQLSLASLPPPGEPAALRVYTHVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++ GI  K 
Sbjct: 61  YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYGQDQATT 179
           A R++ ELK K ++L+       +    +           ++ + +AL+NLGY   QA  
Sbjct: 121 AERLVVELKDKLVALARAAGPARAGAEAD----------VLDQLRTALLNLGYRPPQA-E 169

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V   L+         +++R AL+
Sbjct: 170 GVAEALRDSAEGRPLDELLREALK 193


>gi|294669790|ref|ZP_06734856.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308356|gb|EFE49599.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 194

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 19/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  + +   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKQPPQIVIDVNGVAYEADVSMQTFYNLPPLNETVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFGTAAERATFRQLVKVSGIGAKTALGILSAMTADELAQAVAQEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK   LS     D      + A          + I  L+ LGY   +A  A
Sbjct: 121 AERMILELRGK---LSGGTVSDGLFAQPQAADETD------DIIGTLLALGYSDREARAA 171

Query: 181 VVSVLKKEKNIADDSQI---IRLALR 203
           V       K IA  +++   +RLAL+
Sbjct: 172 V-------KGIAPGTEVGEGVRLALK 190


>gi|291280036|ref|YP_003496871.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans
           SSM1]
 gi|290754738|dbj|BAI81115.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans
           SSM1]
          Length = 191

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 13/176 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +     ++++++  G+ Y I   + T S L + G    +FV+  +++D I L
Sbjct: 1   MINYINGKLVFKKPEFIVLETFGIGYHINISLNTFSKLPEEGANLKIFVQQIVKEDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + ++++F LL  V  VG ++A+ +LS     EL E I+ +N   +A IPGI  K 
Sbjct: 61  YGFFDEAEKEFFNLLIKVSKVGPKLALSILSGFNVDELKECIVSKNHIKLASIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A RI+ ELK K  ++  VV +D      E            + +SAL+NLGY + +
Sbjct: 121 AERIVLELKDKLDNV-EVVSEDGDVQILE------------DVVSALINLGYKKQE 163


>gi|258593140|emb|CBE69451.1| Holliday junction DNA helicase ruvA [NC10 bacterium 'Dutch
           sediment']
          Length = 208

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 5/171 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       ++IDV GV Y ++ P+ T   L +I     L + TH+R+D I+L
Sbjct: 1   MIAQLRGLLASKDPGQIVIDVNGVGYQVFVPLSTFYQLPEIQQEVHLRIYTHVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F LL  V G+G R+A  +LS I   E + +++  ++  +  IPG+  K 
Sbjct: 61  YGFHAIEERITFELLTGVSGIGPRLAANILSGIAVEEFIPAVLEGDTARLKAIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           A RI+ ELK K   ++ V  +    V+++ +          + +SAL+NLG
Sbjct: 121 AERIILELKDK---VTEVPCRGRVVVDRQPS--PERDRTIEDVVSALLNLG 166


>gi|311694932|gb|ADP97805.1| Holliday junction ATP-dependent DNA helicase RuvA [marine bacterium
           HP15]
          Length = 209

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        L++  G+ Y +  P  T   L + GD  TL     +R+D   L
Sbjct: 1   MIGRIRGILVEKAPGQALVECAGLGYEVDIPYTTFFHLPETGDEVTLHTHFAVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S LDR  F LL  V GVG ++A+G+LS + A + +  +  ++S  + ++PG+  K 
Sbjct: 61  YGFASSLDRDLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVENRDSASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQ 176
           A R++ E+  +   L    V          Q          +    A +AL+ LGY   +
Sbjct: 121 AERLLIEMADRIGQLEGQFVPTSPEATGVGQPGGQGPAGGPVATEEAEAALIALGYKPQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           A  A+  V   E+ ++ ++ +IRLALR
Sbjct: 181 AAKAISKV--AEEGMSSET-LIRLALR 204


>gi|258514397|ref|YP_003190619.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778102|gb|ACV61996.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 203

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  +  + V++DV GV Y I+ P    S L   G+   L     +++D ++L
Sbjct: 1   MIAFLRGKIVFIEANSVVLDVSGVGYRIFVPASCQSKLPAAGEEMLLLTYLSVKEDSLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F++L +V G+G + A+ VLS ++  +L  ++  ++ K + ++PGI  K 
Sbjct: 61  YGFIEQQERELFVMLLNVGGIGPKGALSVLSCLSPAQLYLAVAREDIKAVMKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L   VQ       +    +    + A +A+ AL  LGY   +A   
Sbjct: 121 AQRLILELKDK---LKGRVQPGEETTPE---TVSGSQNEAEDALFALEALGYSVSEAIVV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V  VL+        S++++ AL+ +  
Sbjct: 175 VQEVLRSSSKNISASELLKNALQKLDA 201


>gi|255011116|ref|ZP_05283242.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis 3_1_12]
 gi|313148926|ref|ZP_07811119.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12]
 gi|313137693|gb|EFR55053.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12]
          Length = 201

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L     +ID  G+ Y +   + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAIQGK--SSCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFVDKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQD-------MSCVNKEQAHICSMPSFAINAISALVNLGY 172
            A R++ +LK K  + +             +  +N E             A++AL  LG+
Sbjct: 119 TAQRVIVDLKDKIKTGAMAATAVGGAAGALLPAMNAEVQE---------EAVAALTMLGF 169

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
               +   V+++LK+E + A   ++I+LAL+
Sbjct: 170 AAAPSQKVVLAILKEEPD-APVEKVIKLALK 199


>gi|238754860|ref|ZP_04616210.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri
           ATCC 29473]
 gi|238706871|gb|EEP99238.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri
           ATCC 29473]
          Length = 204

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G I       VL++  GV Y I  P+     L +IG    +F +  +R+D   L
Sbjct: 1   MIGRIRGIILEKQPPLVLLETNGVGYEIQLPMTCFYELPEIGQEAIIFTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  + S   +    A + +  + A  A+SALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTSDIPLPTTSAQVSAADAEA-EAVSALVSLGYKPQEAS 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K      D   +IR ALR+
Sbjct: 180 RLVSKIAKPG---TDCETLIRDALRS 202


>gi|134294766|ref|YP_001118501.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4]
 gi|166230530|sp|A4JBL3|RUVA_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134137923|gb|ABO53666.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4]
          Length = 193

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 23/210 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A R++ ELKGK  +    +    S            PS  A + ++ALV LGY + +   
Sbjct: 121 AERLLLELKGKLGADLGALAGAAS------------PSDHAADILNALVALGYSEKEGLA 168

Query: 180 AVVSVLKKEKNIADDSQI---IRLALRAIS 206
           A+       KN+   + +   I+LAL+A+S
Sbjct: 169 AI-------KNVPAGTGVSDGIKLALKALS 191


>gi|307244215|ref|ZP_07526330.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492365|gb|EFM64403.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis
           DSM 17678]
          Length = 203

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG +E +  DYVLI+   + Y +     TLS L + GD   ++ +  +R+D I L
Sbjct: 1   MIGYIKGTVEYIGIDYVLIENNEIGYKLNASSNTLSQLNE-GDRVKVYTKMIVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  + + F LL SV  +G ++ + +LS  T ++L   I   ++K +++ PG+  K 
Sbjct: 60  CGFYSKEELEMFNLLTSVSKIGTKLGLAILSFATPSQLHLYISTSDTKTLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A R++ ELK +   L S+  +D   V K      SMP+ +   AI AL+ LGY   ++  
Sbjct: 120 AERMVLELKDRLGKL-SISGEDF--VGK---PTVSMPTTSDGEAIDALIALGYTGQESKV 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V +    + D   I++ AL  I
Sbjct: 174 AVDFVKQPGMGVED---IVKKALEYI 196


>gi|330828297|ref|YP_004391249.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas
           veronii B565]
 gi|328803433|gb|AEB48632.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas
           veronii B565]
          Length = 229

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +       VL++V GV Y +  P+     L +IG   T+     +R+D   L
Sbjct: 26  VIGRLRGIVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS +TAT+ V S+  +    + ++PG+  K 
Sbjct: 86  YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKT 145

Query: 121 ASRIMTELKGKAISLSSVVQQD-----MSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A R++ E+K +   L   V  D     M  +   +  + + P     A SALV LGY   
Sbjct: 146 AERLVVEMKDR---LKGWVSHDLFSPAMVTLPASEPELRA-PDVTEEAASALVALGYKPQ 201

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+  V  + K+  ++ D   IIR +LR++
Sbjct: 202 QASQIVSKIAKEGMSVED---IIRESLRSL 228


>gi|213966124|ref|ZP_03394311.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum
           SK46]
 gi|213951222|gb|EEB62617.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum
           SK46]
          Length = 206

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 16/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G +  L  DY +I+  GV +++    R  S L +       F+ T M  R+D I
Sbjct: 1   MIASLRGEVIDLGADYCVIECGGVGHLVTITGRLASQLVR---HEQTFMLTTMAVREDAI 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF +  +R+ F LL++V  VG +VAM VLS ++  E+  ++  +N+K +    G+  
Sbjct: 58  TLFGFANSQEREMFALLRTVSTVGPKVAMSVLSVLSPAEIANAVASKNAKALQAANGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYG 173
           ++A R++ ELK K       V  D +    E+A   + P   + A     + ALV LG+ 
Sbjct: 118 RLAERLLVELKDKV-----EVFADRAVSQPEEAASGAAPGIVLKADLDQVVGALVGLGFP 172

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  A  A  +V++ +  + D    ++ AL+ +
Sbjct: 173 EADANEAAETVVRIDPTL-DTPMALKAALKTL 203


>gi|91776705|ref|YP_546461.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus
           KT]
 gi|123253965|sp|Q1GYR7|RUVA_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91710692|gb|ABE50620.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus
           KT]
          Length = 194

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 24/211 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+ID  GV Y    P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIARLSGILVEKTPPQVVIDCHGVGYECEVPMSTFYNLPATGEKVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R  F  L  V GVGA+ A+ +LS ++  +L +++ LQ + ++ ++PGI  K 
Sbjct: 61  YGFGSDQERATFRQLLKVNGVGAKSALAILSGLSVDDLAQAVALQETGLLIKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178
           A R++ ELK            D   ++   A   S P  S + + ++AL+ LGY + +A 
Sbjct: 121 AERLLLELK------------DKFAIDGGTALAGSNPAKSASSDVLNALLALGYNEREAL 168

Query: 179 TAVVSVLKKEKNIADD---SQIIRLALRAIS 206
            AV       K +  D   ++ I+L+L+++S
Sbjct: 169 AAV-------KQLPADIAVAEGIKLSLKSLS 192


>gi|330996011|ref|ZP_08319905.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT
           11841]
 gi|329574008|gb|EGG55586.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT
           11841]
          Length = 200

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  +KG I  L     ++D  GV Y +   + T S L GK      L+V   +R+D   
Sbjct: 1   MIEYVKGQIAELTPATAVVDCHGVGYGLNISLNTFSALQGK--QEAKLYVYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F+LL SV G+G   A  +LS +T  ELV  I   N K++  + GI +K
Sbjct: 59  LYGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LK K   ++SV  +  +                  A++AL  LG+    +  
Sbjct: 119 TAQRIIVDLKDK---IASVEIEGTASPGTSATMATGHSEILEEAVAALTMLGFPPAPSQK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
             +++LK+E   A + ++I+LAL+
Sbjct: 176 VALAILKEEPEAAVE-RVIKLALK 198


>gi|323702066|ref|ZP_08113734.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532948|gb|EGB22819.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans
           DSM 574]
          Length = 199

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +   +V++DV G+ Y +Y P   ++ L   G     +    +R+D I++
Sbjct: 1   MIAYIKGKLAYIGAGWVVVDVNGIGYRLYIP--AMTKLPSTGQEVQFYTHMAVREDGIQI 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + + + F+ L  V GVG +VA+ V++ +        I   N   + ++PG+  K 
Sbjct: 59  YGFLQEEELECFLALLDVAGVGPKVALAVVAHLPPGVFKGIIASGNVNQLVKVPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM ELK K +   + + +    +      I        +A+ AL++LGY Q++A  A
Sbjct: 119 AQRIMLELKDK-LRGPAALPEPSETITPAPGRIED------DAVVALLSLGYAQNEAREA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   +       D S +I+ AL+ ++
Sbjct: 172 VRQAMGLGLT-GDVSALIKAALKELA 196


>gi|289422389|ref|ZP_06424235.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius
           653-L]
 gi|289157224|gb|EFD05843.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius
           653-L]
          Length = 207

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 8/184 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG I+ +  DY+LI+  G+ Y +     TLS L  IG    ++ +  +R+D I L
Sbjct: 1   MIGYIKGIIDEIGIDYILIENNGIGYKLLVSTTTLSQLS-IGQEAKIYTKMIVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  + + F LL SV  VG +V MG+LS      +   II  +   +++ PG+  K 
Sbjct: 60  CGFYSKEEEEMFKLLTSVSKVGTKVGMGILSFAPPARIQSIIINSDVTAMSKAPGVGKKT 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ ELK   GK +       +++    KE A    + +    AISAL+ LGY   +A
Sbjct: 120 AERIILELKDKVGKIVIDGLDTMENLPLSGKEIA----IDNSEDEAISALIALGYTSSEA 175

Query: 178 TTAV 181
             +V
Sbjct: 176 QESV 179


>gi|170699606|ref|ZP_02890645.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria
           IOP40-10]
 gi|171319639|ref|ZP_02908733.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5]
 gi|172059669|ref|YP_001807321.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6]
 gi|229560008|sp|B1YTE0|RUVA_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170135488|gb|EDT03777.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria
           IOP40-10]
 gi|171095130|gb|EDT40136.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5]
 gi|171992186|gb|ACB63105.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6]
          Length = 193

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++ALV LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASQSDHATDILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|85059239|ref|YP_454941.1| Holliday junction DNA helicase motor protein [Sodalis glossinidius
           str. 'morsitans']
 gi|123752615|sp|Q2NTI9|RUVA_SODGM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84779759|dbj|BAE74536.1| holliday junction DNA helicase RuvA [Sodalis glossinidius str.
           'morsitans']
          Length = 205

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLLETHGVGYEVFMPMTCFYALPETGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R  F  L  V GVG ++A+ +LS ++A + + ++  Q    + ++PG+  K 
Sbjct: 61  FGFIHKQERVLFRELIKVNGVGPKLALAILSGMSAQQFISAVERQEINALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQA 177
           A R++ E+K +   LS    V Q    +        +MP+     A++ALV LGY   +A
Sbjct: 121 AERLVVEMKDRFKGLSGDLFVPQGAGEIPA-AIDAPAMPADPEGEAVAALVALGYKPQEA 179

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  V  V       +D   +IR ALRA
Sbjct: 180 SRMVSKVASAG---SDCEMLIRDALRA 203


>gi|88861319|ref|ZP_01135950.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas
           tunicata D2]
 gi|88816698|gb|EAR26522.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas
           tunicata D2]
          Length = 205

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 13/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y ++ P+     L K G+  TL+    +R+D   L
Sbjct: 1   MIGRLSGILIEKQPPQILLDVAGVGYEVHLPMTCFYHLPKEGEKTTLYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L    GVG ++ + +LS ++A + V+ +  +++  + ++PG+  K 
Sbjct: 61  FGFNHKAERALFRELLKANGVGPKLGLAILSGMSADQFVQCVQHEDATSLVKLPGVGKKT 120

Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E+K      G+ +   S  +  +   N    H     S   +AI+ALV LGY Q
Sbjct: 121 AERLVLEMKDRLKDWGRDLFNPSSNELVLEMQNGPNVH----DSAEDDAIAALVALGYKQ 176

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            QA   V S+    K       +IR AL+++
Sbjct: 177 AQAEKTVKSLRAPGKT---SEVLIREALKSM 204


>gi|116620084|ref|YP_822240.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255537|sp|Q02AG7|RUVA_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116223246|gb|ABJ81955.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 197

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 8/181 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +   + + VL++  GV Y +  P+ T + L  +G    L + TH+R+D + L
Sbjct: 1   MIALLRGLVVEKHPNQVLVETGGVGYDVTIPVSTFTKLPDLGGEVRLRIYTHVREDVLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L SV G+G  +A+ +LS + A +L+ SI     + + ++PG+  K 
Sbjct: 61  YGFLTQDEKALFEKLISVSGIGPTLAVKILSGLAAADLILSIRRGEVEKLVKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L +   ++      E     ++     + +SAL+NLG  + QA  A
Sbjct: 121 AERMVLELRDK---LPAATGEEPGAPAAE-----ALSPIDQDVLSALLNLGCARPQAEAA 172

Query: 181 V 181
           V
Sbjct: 173 V 173


>gi|227504981|ref|ZP_03935030.1| Holliday junction DNA helicase motor protein [Corynebacterium
           striatum ATCC 6940]
 gi|227198431|gb|EEI78479.1| Holliday junction DNA helicase motor protein [Corynebacterium
           striatum ATCC 6940]
          Length = 194

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 7/188 (3%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           D+ +I+  GV Y       TL  L + GD  T+     +++D + L+GF +D DR  F +
Sbjct: 7   DHAVIECAGVGYKFLATPVTLGTL-RRGDEATVLTSMVVKEDSMTLYGFSNDEDRDMFHV 65

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           LQ+V G+G ++A+  LS +  ++L ++I   ++K +  IPG+  ++A R+  EL+ K  +
Sbjct: 66  LQTVSGLGPKLALAALSVMGPSQLAQAISSGDAKTLQTIPGVGKRMAERLALELRDKVSA 125

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
            +   Q       +E +   +        + ALV LG+  D+A   VV  +  E++ A+ 
Sbjct: 126 FAPQAQP-----GQEASAAVAHGPVVDQVVEALVGLGF-TDKAARPVVEGIVAEESAAET 179

Query: 195 SQIIRLAL 202
           + ++R AL
Sbjct: 180 AVVLRGAL 187


>gi|254424412|ref|ZP_05038130.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335]
 gi|196191901|gb|EDX86865.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335]
          Length = 207

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 23/206 (11%)

Query: 1   MIGKIKG---NIEGLYEDYVLIDVQ--GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG +KG   + + L    V+  V+  GV Y +    RTLS L ++G+   +F     R+
Sbjct: 1   MIGYVKGILADSQKLPNGRVIATVEAGGVGYDMQVNPRTLSQLPQVGEPVRIFTHLQSRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   LFGF S  +R  F LL SV G+G+++ M +L+ +   EL++S++  N++V+ + PG
Sbjct: 61  DLQMLFGFSSKAERDVFRLLISVSGIGSQMGMSLLNALGLNELIQSVVNGNARVLTRTPG 120

Query: 116 ISMKIASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +  K A RI+ ELK K     S S +V      ++  Q  +  M          LV LGY
Sbjct: 121 VGNKTAERIILELKTKLSEWRSHSGIVAPTGGPISAVQEDVEMM----------LVALGY 170

Query: 173 GQDQATTAVVSV-----LKKEKNIAD 193
              + + A+V+V     L K  ++ D
Sbjct: 171 SNSEISKALVAVGNGTALSKSDDVED 196


>gi|88705605|ref|ZP_01103315.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71]
 gi|88700118|gb|EAQ97227.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71]
          Length = 195

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 8/189 (4%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           +L+DV GV Y +  P+ TL  L  +G+  TL     +R+D   L+GF+S  DR+ F  L 
Sbjct: 9   ILVDVGGVGYELQVPMTTLFQLPALGEVVTLLTHHAVREDAQTLYGFVSARDRELFRHLI 68

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            V GVG ++A+ +LS +       ++   +   +  +PG+  K A R++ E++ +   +S
Sbjct: 69  KVNGVGPKLALTILSGMDGERFARAVHDDDLSALVALPGVGKKTAERLLIEMRDR---VS 125

Query: 137 SVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
             ++       N  QA   S      +A  ALV LGY   +A   V  V     +I+D  
Sbjct: 126 GWLEPGPGESANLGQAGPSS--DKLGDAEGALVALGYKPAEAARLVARV--DNDDISDSE 181

Query: 196 QIIRLALRA 204
           ++IRLALR+
Sbjct: 182 ELIRLALRS 190


>gi|262375568|ref|ZP_06068801.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145]
 gi|262309822|gb|EEY90952.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145]
          Length = 200

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 9/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D   L
Sbjct: 1   MIGCLIGEVLALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  ++  F  L  V GVG ++A+G+LS ++   L+ ++  ++   + ++PG+  K 
Sbjct: 60  YGFINAQEKTIFRTLLKVNGVGPKMALGILSTLSVEMLIHTVEHEDINTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A R+M EL+ +  +++S      +  N     I  M + A+  A +AL +LGY   +A  
Sbjct: 120 AERLMIELRDRFKAMAS----GAAPSNSTAPQIQFMGNSAVAEAEAALQSLGYKPVEAQK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +V+  K E    + S IIR AL++++
Sbjct: 176 -LVNAAKGE--FTEASDIIRAALKSMN 199


>gi|227111608|ref|ZP_03825264.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 205

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S +      A    +      A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPAAADSRVSDPETEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + + +   AD   +IR ALRA
Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203


>gi|220916123|ref|YP_002491427.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|254766937|sp|B8JF04|RUVA_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219953977|gb|ACL64361.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 197

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I    +D+ ++DV GV Y+++    +L+ L   G+   L V TH+R+D + L
Sbjct: 1   MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++ GI  K 
Sbjct: 61  YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K ++L+       +    +               +AL+NLGY   QA   
Sbjct: 121 AERLVLELKEKLVALARAAGPARAGAEADVLEQLR---------TALLNLGYRPPQA-EG 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L+         +++R AL+
Sbjct: 171 VAEALRDSAEGRPLDELLREALK 193


>gi|238026246|ref|YP_002910477.1| Holliday junction DNA helicase RuvA [Burkholderia glumae BGR1]
 gi|237875440|gb|ACR27773.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia
           glumae BGR1]
          Length = 193

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPPTGERVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL + + +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSAFRELLKITGIGARMALAVLSGMSVQELSQVVTIQDAARLQRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+     E A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLG----ELAGQASQSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+L+L+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191


>gi|115350636|ref|YP_772475.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD]
 gi|122324004|sp|Q0BI82|RUVA_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115280624|gb|ABI86141.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD]
          Length = 193

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++ALV LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASQSDHAADILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|300717084|ref|YP_003741887.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
 gi|299062920|emb|CAX60040.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
          Length = 205

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 107/210 (50%), Gaps = 13/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++     LF    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEANGVGYEVHMPMTCFYELPELNQEAILFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAIN-----AISALVNLGYGQ 174
           A R++ E+K +   +      D+   +   A    + P+ A N     A++ALV+LGY  
Sbjct: 121 AERLVVEMKDRFKGMHG----DLFAADAPFALTSEVQPADAANDAEGEAVAALVSLGYKP 176

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204
            +A+  +  + + +   AD   +IR ALRA
Sbjct: 177 QEASRMISKLGRPD---ADCETLIREALRA 203


>gi|237748980|ref|ZP_04579460.1| RuvA protein [Oxalobacter formigenes OXCC13]
 gi|229380342|gb|EEO30433.1| RuvA protein [Oxalobacter formigenes OXCC13]
          Length = 193

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 27/212 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+D QGV Y I  P+ T   L  +G+  TLF    +R+D   L
Sbjct: 1   MIGRIQGILLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGEKVTLFTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVGAR A+ +LS ++  ++ +++ LQ++  +  IPGI  K 
Sbjct: 61  YGFGSLDERALFRQLIRISGVGARTALALLSGLSVNDMSQAVALQDASRLTSIPGIGKKT 120

Query: 121 ASRIMT-----ELKGKAISLSSVVQQD-MSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++         G   ++SS VQ D M+ +                  +AL+ LGY +
Sbjct: 121 AERLLLELKGKLETGALSAISSSVQNDAMADIQ-----------------NALLALGYSE 163

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +   A+    K+  N    S  I++AL+A+S
Sbjct: 164 KETILAI----KQVPNDCSVSDGIKMALKALS 191


>gi|329118736|ref|ZP_08247436.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465171|gb|EGF11456.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 193

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 32/212 (15%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +   +   ++IDV G+ Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGTLAEKHPPQIVIDVNGIGYEAEVSMQTFCALPPVGETVRLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS +   EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFADAEERAAFRQLVKVGGIGAKTALGILSAMNTAELAQAVAQEDVKRLSAAPGIGKKT 120

Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ EL+GK      +  L++  QQD                   + +  L+ LGY +
Sbjct: 121 AERMILELRGKLAPANVSGGLAAPAQQDGGE----------------DIVQTLLALGYSE 164

Query: 175 DQATTAVVSVLKKEKNIADDSQI---IRLALR 203
            +A  A        K I   +++   +RLAL+
Sbjct: 165 REARAAA-------KGIPPGTEVGEGVRLALK 189


>gi|296454195|ref|YP_003661338.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JDM301]
 gi|312132689|ref|YP_004000028.1| ruva [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483238|ref|ZP_07942233.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689208|ref|YP_004208942.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691274|ref|YP_004220844.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|291516874|emb|CBK70490.1| Holliday junction DNA helicase subunit RuvA [Bifidobacterium longum
           subsp. longum F8]
 gi|296183626|gb|ADH00508.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JDM301]
 gi|311773647|gb|ADQ03135.1| RuvA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915307|gb|EFV36734.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456130|dbj|BAJ66752.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460544|dbj|BAJ71164.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 208

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 106/210 (50%), Gaps = 17/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y +      LS L   G    +F   ++ QD I L
Sbjct: 1   MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRL-HAGQDTRVFTYMNLSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL    ++ F+ L  V G+G +VA  +LS +T ++L  +I   ++  +A+ PG+  K 
Sbjct: 60  HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178
           A +I+ ELKG +I LS +  +  S     QA I   P  +     +  L++LG+ Q  A 
Sbjct: 120 AQKIILELKG-SIDLSQI--EGASA----QAAISKSPVDTGTEQVVEGLISLGWRQQDAQ 172

Query: 179 TAVVSVLKKEKNIA-----DD-SQIIRLAL 202
            AV      E +I      DD  +++RLAL
Sbjct: 173 QAVAEAC-AENDIPTPLATDDVPRVLRLAL 201


>gi|269122262|ref|YP_003310439.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC
           33386]
 gi|268616140|gb|ACZ10508.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC
           33386]
          Length = 205

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 81/131 (61%), Gaps = 3/131 (2%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           DYV ++V G+ Y I+  ++T   L +  D   LF+ T++++D   L+GF ++ +R+ F  
Sbjct: 15  DYVALEVNGIAYKIFISLKTYDMLTE--DTEKLFIYTNVKEDDFSLYGFKTESERELFKA 72

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L S+ GVG ++ + +LS     E+++ +I +N+K++ ++PG+  K A +++ +LK K   
Sbjct: 73  LVSISGVGPKLGLAILSTFNTQEVIDIVIEENAKLLVRVPGLGQKKAQKLIVDLKDKVKK 132

Query: 135 LSSV-VQQDMS 144
           L+ + + QD S
Sbjct: 133 LNVIGIAQDGS 143


>gi|323496589|ref|ZP_08101642.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326]
 gi|323318335|gb|EGA71293.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326]
          Length = 205

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 110/210 (52%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAISALVNLGYGQD 175
           A R++ E+K +    S+    D+     + A + S P     S    A+SAL++LGY   
Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPVDSAPEVVQSSAEEEAVSALLSLGYKPT 177

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+  V  +L+   +     ++IR AL+++
Sbjct: 178 QASKVVSQILQPGMS---SEELIREALKSM 204


>gi|311031507|ref|ZP_07709597.1| Holliday junction DNA helicase RuvA [Bacillus sp. m3-13]
          Length = 203

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 4/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E +  +YV+++V GV Y +  P   +  + +  +  T++   H+R+D + L
Sbjct: 1   MIDFIRGFVEYVSPEYVVVEVMGVGYQVNAPNPFIYQVDRDKE-VTIYTYQHVREDILAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D+  FM L +V G+G + A+ +L+     ++V +I  ++ K + + PG+  K 
Sbjct: 60  YGFKTREDKNLFMKLLNVTGIGPKGALAILASGQPAQVVHAIENEDEKFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L      D+   + E +   +  S    A+ AL  LGYG+ +    
Sbjct: 120 ARQIILDLKGKLNDLVPSAFPDLFQPDVEVSVPGASSSALEEALEALKVLGYGE-REIKK 178

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +V  L+KE    D  Q ++ AL+
Sbjct: 179 IVPALQKEDLSTD--QYVKRALQ 199


>gi|154487345|ref|ZP_02028752.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis
           L2-32]
 gi|154083863|gb|EDN82908.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis
           L2-32]
          Length = 205

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G++E +     +I+V GV Y +  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASM-HAGQEIKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG +I LS +     +    E        + A   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-SIDLSQIEGSSATASTPED-------TGAEQVVEGLMSLGWHQQDAAHA 171

Query: 181 VVSV-----LKKEKNIADDSQIIRLALRAI 205
           V +V     ++   N  D  ++++LAL ++
Sbjct: 172 VQTVCADNQIETPLNAEDVPRVLKLALTSL 201


>gi|269138790|ref|YP_003295491.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella
           tarda EIB202]
 gi|267984451|gb|ACY84280.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella
           tarda EIB202]
 gi|304558782|gb|ADM41446.1| Holliday junction DNA helicase RuvA [Edwardsiella tarda FL6-60]
          Length = 202

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       V+++  GV Y +  P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGTILEKQPPQVVLETHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+K +   LS        D+    + QA   +       A++AL+ LGY   +A
Sbjct: 121 AERLVVEMKDRFKGLSGDLFTPTDDLPPSTQPQAQADA----EGEAVAALIALGYKPQEA 176

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  V  V       AD   +IR ALRA
Sbjct: 177 SRLVNRVTVAG---ADSETLIRDALRA 200


>gi|254374431|ref|ZP_04989913.1| holliday junction DNA helicase RuvA [Francisella novicida
           GA99-3548]
 gi|151572151|gb|EDN37805.1| holliday junction DNA helicase RuvA [Francisella novicida
           GA99-3548]
          Length = 216

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGALIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-------NKEQAHICSMPSFAI--NAISALVNLG 171
           A R++ E+  K + +++ +    S           +QA   ++ + +I   ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +      A   ++IR AL+
Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209


>gi|295695626|ref|YP_003588864.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912]
 gi|295411228|gb|ADG05720.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912]
          Length = 198

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 112/203 (55%), Gaps = 12/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I G+  D+V++DVQGV Y +Y    +L+     G    L  +   R+D   L
Sbjct: 1   MIAFLRGKIAGVNPDHVVMDVQGVGYKVYV-APSLAATLHPGQEAVLHTQLVWREDGPTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R +F+L+Q+V G+G +VA+GV++      +  +++ ++   +  + G+  K 
Sbjct: 60  YGFADPRERDFFVLVQTVPGIGPKVALGVVA-AGIDRVSRAVVEEDMAFLRGLSGVGRKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ +   LS +V  D +   +E + +  M     + ++AL  LGY  ++   +
Sbjct: 119 ADRLVVDLRDR---LSGLV-PDAAGPEREGSGVRPME----DVVAALSALGY-NEREIQS 169

Query: 181 VVSVLKKE-KNIADDSQIIRLAL 202
           ++ VL++E K   +  ++IRLAL
Sbjct: 170 IMPVLRREWKEGREPEEMIRLAL 192


>gi|257063440|ref|YP_003143112.1| Holliday junction DNA helicase, RuvA subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791093|gb|ACV21763.1| Holliday junction DNA helicase, RuvA subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 197

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G + G   D   I+V GV + +  P   L+ L + G+   +     +R+D + L
Sbjct: 1   MIAFLNGRVAGHTTDTAFIEVNGVGFAVGMPASDLAKLPERGEEVLVHTYLAVREDAMAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++++F  L  V GVG +VA+  LS     EL  +I   + K ++ IPG+  K 
Sbjct: 61  YGFLTQDEKRFFEKLIGVSGVGPKVALAALSVYKPEELANAIAAGDVKAVSMIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKG      S   ++M S  ++E A           A  AL+++G+   +A  
Sbjct: 121 AQRMILELKG------SFSDENMQSLFDQETAEATRRLE---GAREALLSMGFSSAEADL 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           A+       + +  DS +I+ ALR +  
Sbjct: 172 ALKDA---PEELHTDSALIQYALRRLGS 196


>gi|119025822|ref|YP_909667.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           adolescentis ATCC 15703]
 gi|166230520|sp|A1A1K2|RUVA_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118765406|dbj|BAF39585.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 205

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G++E +     +I+V GV Y +  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASM-HAGQEIKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG +I LS +     +    E        + A   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-SIDLSQIEGSSATASTPED-------TGAEQVVEGLMSLGWHQQDAAHA 171

Query: 181 VVSV-----LKKEKNIADDSQIIRLALRAI 205
           V +V     ++   N  D  ++++LAL ++
Sbjct: 172 VQTVCADNQIETPLNAKDVPRVLKLALTSL 201


>gi|295677647|ref|YP_003606171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002]
 gi|295437490|gb|ADG16660.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002]
          Length = 193

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERIVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGAM----AGATSPSDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|253578705|ref|ZP_04855976.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849648|gb|EES77607.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39BFAA]
          Length = 202

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 96/189 (50%), Gaps = 11/189 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G    + E  V+++  G+ Y IY     LS + ++G+   +     +R+D ++L
Sbjct: 1   MIAFVHGMAVDMTESSVVVEAGGIGYEIYMTGADLSEI-RMGEDVKVHTYFSVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D Q F LL  V GVG + A+GVL+ ITA EL  +I+  + K +++ PGI  K 
Sbjct: 60  YGFRAKDDLQMFKLLLGVNGVGPKAALGVLAGITADELRFAILSDDVKTLSKAPGIGKKT 119

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A +++ ELK K     A  L  V +Q+ + V   +            A+ ALV LGY   
Sbjct: 120 AQKLILELKDKMKLEDAFELKLVHEQERAAVGAGEVSDGRQ-----EAVEALVALGYSSA 174

Query: 176 QATTAVVSV 184
            A  AV  V
Sbjct: 175 DALRAVRKV 183


>gi|261340247|ref|ZP_05968105.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317332|gb|EFC56270.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC
           35316]
          Length = 203

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L   G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        S       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPSSDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V K +   A    +IR ALRA
Sbjct: 181 VSKVAKPD---AGSETLIREALRA 201


>gi|261252501|ref|ZP_05945074.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891]
 gi|260935892|gb|EEX91881.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891]
          Length = 205

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 15/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNLGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAISALVNLGYGQD 175
           A R++ E+K +    S+    D+     + A   S+P     S    A+SAL+ LGY   
Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPADSVPQATQESAEEEAVSALLALGYKPT 177

Query: 176 QATTAVVSVLKKEKNIADDS--QIIRLALRAI 205
           QA+  VVS +KK    AD S  Q+IR AL+++
Sbjct: 178 QASK-VVSQVKK----ADMSSEQLIREALKSM 204


>gi|224456850|ref|ZP_03665323.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370278|ref|ZP_04986283.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874591|ref|ZP_05247301.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|90135024|sp|Q5NH17|RUVA_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151568521|gb|EDN34175.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840590|gb|EET19026.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158951|gb|ADA78342.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 216

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +     +A   ++IR AL+
Sbjct: 181 YKQKDAEKMARSAMGDATTVA---EVIRKALQ 209


>gi|326335182|ref|ZP_08201379.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692712|gb|EGD34654.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 196

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G++      YV+ID  G+ Y +   + T S L    +   L+    +++D   L
Sbjct: 1   MITQLQGHLVEKTPTYVIIDCNGIGYWVNISLNTFSQLSD-SEQIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV GVGA  A  +LS ++  +L  +I+  + + I  + GI  K 
Sbjct: 60  FGFFEKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNNDVRTIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ K + LSS  + +++    +Q H      +   A+SAL  LGY Q  A   
Sbjct: 120 AQRIILDLREKMLKLSS--EGNIAPTVSQQQH------YKEEALSALEVLGYPQKIAENV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L          ++I+ AL+ +
Sbjct: 172 VNKILSHATGEVSVEELIKQALKQL 196


>gi|189462206|ref|ZP_03010991.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136]
 gi|189431109|gb|EDV00094.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136]
          Length = 198

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 9/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG +  +     +I+  G+ Y I   + T S + GK      L++   +R+D   
Sbjct: 1   MIEYIKGELTEITPAMAVIECNGLGYGINVSLNTYSAIQGK--KEVKLYIYESIREDAYI 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F+LL SV G+G   A  +LS +T +EL   I   N K++  + GI +K
Sbjct: 59  LYGFATKQERELFLLLISVSGIGGNTARMILSALTPSELCNVISSGNDKLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LK K IS + +     S        I +       AI+AL  LG+ Q  +  
Sbjct: 119 TAQRIIVDLKDK-ISTTDIGTSTTSA----PISITANNEIYEEAIAALTMLGFAQAPSQK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V ++LK+E + A + ++I+LAL+
Sbjct: 174 VVAAILKEEPDAAVE-KVIKLALK 196


>gi|307730947|ref|YP_003908171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003]
 gi|307585482|gb|ADN58880.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003]
          Length = 193

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGAM----AGAVSASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQI---IRLALRAIS 206
           +       KN+   + +   I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSDGIKLALKALS 191


>gi|171060623|ref|YP_001792972.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6]
 gi|229560097|sp|B1Y8E1|RUVA_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170778068|gb|ACB36207.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6]
          Length = 191

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ T   L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLTGTLAEKSPPQLLVDVGGVGYEVDVPMSTFYNLPVLGERVTLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR A+ +LS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  YGFLTATERATFRQLLKISGVGARTALSILSGLSVADLAQAVSAQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELKGK    ++L   V +     N+ Q+ I          + AL+ LGY + +A
Sbjct: 121 AERLLLELKGKLGPDLALPGAVIR-----NEAQSDI----------VQALIALGYNEREA 165

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A +  L  +  ++D    I+LALRA+
Sbjct: 166 AAA-IKPLPADVGVSDG---IKLALRAL 189


>gi|227503511|ref|ZP_03933560.1| Holliday junction DNA helicase motor protein [Corynebacterium
           accolens ATCC 49725]
 gi|227076014|gb|EEI13977.1| Holliday junction DNA helicase motor protein [Corynebacterium
           accolens ATCC 49725]
          Length = 202

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y      +TL  L + G+   +     +++D + L
Sbjct: 1   MIAALRGEVLHIGLDHGVIECGGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179
           A R+  ELK K    +     D +     +A     P   +++++ AL+ LG+  ++A  
Sbjct: 120 AQRLTLELKDKVKRFAGTPVPDAA----PEATGAGGP--VVDSVTEALLGLGF-TEKAAR 172

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
            VV     E   AD S ++R AL
Sbjct: 173 PVVEAAYAEAPAADTSTLLRAAL 195


>gi|56707779|ref|YP_169675.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670250|ref|YP_666807.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis FSC198]
 gi|56604271|emb|CAG45291.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320583|emb|CAL08674.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis FSC198]
          Length = 217

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 2   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 62  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 122 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 181

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +     +A   ++IR AL+
Sbjct: 182 YKQKDAEKMARSAMGDATTVA---EVIRKALQ 210


>gi|332883220|gb|EGK03503.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas
           mossii DSM 22836]
          Length = 193

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 12/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  L      ++  G+ Y I   + T + +        L++   +R+D  +L
Sbjct: 1   MIDYIKGDIAELTPTSATLETHGIGYFINISLNTYTSISG-QKSAKLYIYEAIREDAYQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+GA     +LS +T  EL   I   NS ++  + GI  K 
Sbjct: 60  YGFSEKQERELFILLISVSGIGASTGRMILSSMTVQELTNVIASGNSDILKTVKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K I +S +   +M     +             AI+ALV LG+ Q QA+  
Sbjct: 120 AQRVIVDLKDK-IKVSGIESVEMFAKTSQAGE---------EAIAALVMLGFPQ-QASQK 168

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
            VS + K+K  +   Q+I+ AL+
Sbjct: 169 AVSKILKDKPDSTVEQVIKTALK 191


>gi|325290232|ref|YP_004266413.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965633|gb|ADY56412.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 200

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  + +D +++DV GV Y++  P   LS + +IG    L     +R+D + L
Sbjct: 1   MIALLRGTVWEMDKDKLIVDVNGVGYLLNVPSGKLSSV-RIGQEVVLHTYLLVREDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    D++ F+ L SV G+G + A+ +LS  ++ +++ +++ +N  +  +I GI  KI
Sbjct: 60  FGFADRQDKELFIKLLSVSGIGPKAALSILSSFSSVQIITALVQENHVMFTEISGIGSKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-AHICSMPSFAINAISALVNLGYGQDQATT 179
           A R+  ELK K           +  +  E  A   S P      + AL+ LG+   +  T
Sbjct: 120 ARRLTLELKEK------FKDYHLEGLTGETFAGSESGPGSEPGIMEALLALGFTPGETRT 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV +V K E    ++   +R ALR ++
Sbjct: 174 AVNAVGKLEGLTFEEQ--LREALRLLA 198


>gi|309800933|ref|ZP_07695065.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222469|gb|EFO78749.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 185

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 13/188 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +     LI+V GV Y I  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASM-HAGQEVKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178
           A +I+ ELKG +I LS +         +  A + S P  + +   +  L++LG+ Q  A 
Sbjct: 120 AQKIILELKG-SIDLSQI---------ETAASVISRPEDTGSEQVVEGLISLGWRQQDAL 169

Query: 179 TAVVSVLK 186
            AV  V +
Sbjct: 170 HAVQEVWQ 177


>gi|323527310|ref|YP_004229463.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001]
 gi|323384312|gb|ADX56403.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001]
          Length = 193

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGVM----AGAVSASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|206561676|ref|YP_002232441.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           J2315]
 gi|229560010|sp|B4EES6|RUVA_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|198037718|emb|CAR53661.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315]
          Length = 193

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 23/210 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTQQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A R++ ELKGK  +    +    S            PS  A + ++AL+ LGY + +   
Sbjct: 121 AERLLLELKGKLGADLGALAGAAS------------PSDHATDILNALLALGYSEKEGLA 168

Query: 180 AVVSVLKKEKNIADD---SQIIRLALRAIS 206
           A+       KN+      S+ I+LAL+A+S
Sbjct: 169 AI-------KNVPAGTGVSEGIKLALKALS 191


>gi|258405866|ref|YP_003198608.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM
           5692]
 gi|257798093|gb|ACV69030.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM
           5692]
          Length = 204

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG +KG++  + +D+ L+    GV Y +     TL  L + G    LFV T +R+D + 
Sbjct: 1   MIGYLKGDVLRIRKDHCLLATAGGVGYDVQATAGTLGRL-EQGSEAELFVHTVVREDALE 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L  V  +G + ++ +LS  T  EL      +++  + ++ GI  K
Sbjct: 60  LYGFASLAERDVFAELLGVSKLGPKTSLAILSTFTPEELARIAQTEDTAALTRVSGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RIM ELK K  +      +  +     QA   S  S   +A+S L  LGY +++   
Sbjct: 120 SAKRIMWELKDKLTAW-----EGEAVPGTPQATPASGGSVFGDALSGLCGLGYSEEEVRP 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +L++E ++ D  +IIR  L+ ++
Sbjct: 175 VLSEILEQEPDL-DVGEIIRACLKRLA 200


>gi|298479676|ref|ZP_06997876.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22]
 gi|298274066|gb|EFI15627.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22]
          Length = 200

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIHEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176
            A R++ +LK K  ++S      +S        +   P+ A     A+SAL  LG+    
Sbjct: 119 TAQRVIVDLKDKIKTMSGSAGGGVSAG------LLLQPANAEVQEEAVSALTMLGFAAAP 172

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           +   V+++LK+E + A   ++I+LAL+
Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198


>gi|197121426|ref|YP_002133377.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K]
 gi|229470528|sp|B4UFY0|RUVA_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|196171275|gb|ACG72248.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K]
          Length = 197

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 75/131 (57%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I    +D+ ++DV GV Y+++    +L+ L   G+   L V TH+R+D + L
Sbjct: 1   MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++ GI  K 
Sbjct: 61  YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120

Query: 121 ASRIMTELKGK 131
           A R++ ELK K
Sbjct: 121 AERLVLELKEK 131


>gi|300781059|ref|ZP_07090913.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           genitalium ATCC 33030]
 gi|300532766|gb|EFK53827.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           genitalium ATCC 33030]
          Length = 207

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+  GV Y    P  TL+ L + G+   +     +R+D + L
Sbjct: 1   MIDSLNGEVISIGLDHAVIECAGVGYRFLAPPPTLARLVR-GETTRVLTTLVVREDDMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  R  F  L +V G+G ++A+  LS  T  EL   I   ++K I  IPG+  K+
Sbjct: 60  YGFTDDDARSMFHRLTAVSGLGPKLAIAALSVFTPGELAAHITSGDAKTIQSIPGVGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A R++ ELK K   L     Q  +     +    S  SFA    + ALV LG+  +++  
Sbjct: 120 ADRMVLELKDKLQGLYPGAAQSEAPEAAGEVPPISGSSFATEQVVEALVGLGF-PEKSAR 178

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
           A V  +  E + A+ S ++R AL
Sbjct: 179 AAVDAVAAENDGAESSVLLRAAL 201


>gi|120612876|ref|YP_972554.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1]
 gi|166229622|sp|A1TUZ2|RUVA_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120591340|gb|ABM34780.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1]
          Length = 190

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E       L   +       N  QA I          + AL+ LGY  D+  TA
Sbjct: 121 AERLLLE---LKGKLGVDIGARPEAANDAQADI----------LQALLALGY-NDKEGTA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +  L K+  +   S+ I+LAL+A++
Sbjct: 167 ALKALPKDVGV---SEGIKLALKALA 189


>gi|119961641|ref|YP_948037.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1]
 gi|119948500|gb|ABM07411.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1]
          Length = 231

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 24/212 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +I  ++G +  +     +ID+ G    +Y   +TLS L K G    LF    +R+D + L
Sbjct: 18  LISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSHL-KTGSEAKLFTSMIVREDSLTL 76

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R+ F +L SV GVG R+A+ VL+      +  +    +SK   ++PGI  K+
Sbjct: 77  FGFADDDEREVFDVLLSVSGVGPRLALAVLAVHEPEAIRVAAHTGDSKTFTKVPGIGPKV 136

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA------ISALVNLGYGQ 174
           A RI+ EL GK      +V    S          + P+ A NA      ++A+ +LG+ +
Sbjct: 137 AGRIVLELAGK------LVPHGTST--------GTAPAAAPNAEWKPQVVAAMTSLGWSE 182

Query: 175 DQATTAVVSVLKKEKNIADD---SQIIRLALR 203
             A  ++   +     + D    +QI+R  LR
Sbjct: 183 KDANGSIDKAMADSPELVDAGNVAQILRATLR 214


>gi|110833613|ref|YP_692472.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2]
 gi|110646724|emb|CAL16200.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2]
          Length = 201

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 21/213 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y +  P+     L + G   TL     +R+D   L
Sbjct: 2   MIGQLRGTLLEKRPPVLLLDVNGVGYEVEAPMTVFYDLPEAGAELTLHTHFVVREDAQLL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  V GVG ++A+ +LS I A  L   I  Q++  + ++PGI  K 
Sbjct: 62  YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 121

Query: 121 ASRIMTELK-------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++ E++       G  +S+   V  D     +             +AI+AL  LGY 
Sbjct: 122 AERLVIEMRDRLDKIDGGPVSVPGRVDTDQPDDARS------------DAIAALEALGYR 169

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              A  AV     +E   ++  Q+IR AL++++
Sbjct: 170 NKDAAVAVGKAADQEGMSSE--QLIRKALKSLA 200


>gi|114321641|ref|YP_743324.1| Holliday junction DNA helicase RuvA [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122310889|sp|Q0A5Q3|RUVA_ALHEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114228035|gb|ABI57834.1| Holliday junction DNA helicase subunit RuvA [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 208

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   +L+DV GV Y +  P+ T   L       TL+    +R D   L
Sbjct: 1   MIGRLHGTVAERHPPALLLDVGGVGYELEAPMSTFYALPAGDQAVTLWTHLAVRDDGQAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F +L  + GVG ++A+ +LS + A  L   I  ++   + ++PG+  K 
Sbjct: 61  YGFASRAERDLFRVLIRISGVGPKLALALLSGMNAEGLQRCIEREDVATLTRLPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAI-NAISALVNLGYGQDQA 177
           A R++ EL+ +   L       +     + EQ    + P  +  +A+SALV LGY   +A
Sbjct: 121 AQRLIVELRDRLDGLLPAASGGVPARTGSGEQLDAPAGPQGSREDAVSALVALGYKPAEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
              V +V     N     ++IR AL+A
Sbjct: 181 GRLVNAV--PGANDLPSEELIRRALQA 205


>gi|256819155|ref|YP_003140434.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM
           7271]
 gi|256580738|gb|ACU91873.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM
           7271]
          Length = 194

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      +V+ID  GV Y +   + T S L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLVEKNSTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA ++  +II  +   I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGDVATIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L    +  M+ V+  +            A++AL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVPMNAVSTHKE----------EALAALEVLGFMRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++K         +II+ AL+
Sbjct: 170 VDIIIKSSSEELSVEEIIKQALK 192


>gi|213692039|ref|YP_002322625.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254766945|sp|B7GR17|RUVA_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|213523500|gb|ACJ52247.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458151|dbj|BAJ68772.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 208

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y    P   L  L    D C +F   ++ QD + L
Sbjct: 1   MIGMLTGRVESVETDTALIDVGGVGYETRMPATDLGRLHAGQDAC-VFTYLNLSQDSVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    ++ F+ L  V G+G +VA  +L  +T ++L  +I   ++  +A+ PG+  K 
Sbjct: 60  YGFLDRDSKRVFLQLIKVSGIGPKVAQSLLGTMTPSQLARAIADNDAAALAKAPGLGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG ++ L+     D S  N    +  ++ +     +  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELKG-SVDLNQ--SDDASAGNAP--YQPTVDAGVEQVVEGLVSLGWRQQDAQRA 174

Query: 181 VVSVLKKEKNIA------DDSQIIRLAL 202
           V      E ++       D  +++RLAL
Sbjct: 175 VNEAC-AENDVPMPLASDDAPRVLRLAL 201


>gi|284007614|emb|CBA73228.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 204

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL+++ GV Y ++ P+     L +IG    L  +  +R+D   L
Sbjct: 1   MIGRLRGTILEKQPPIVLLELNGVGYEVHMPMTCFYELPEIGQEVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAYQFVSAIEQEAIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E+K +   L+      S +    S   K+ +H          A+SAL++LGY  
Sbjct: 121 AERLVVEMKDRFKGLNGDLFKQSAIDLPGSSAAKQNSH-----DIEAEAVSALISLGYKP 175

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             A+  +  V     N      +IR ALRA
Sbjct: 176 QDASRMIGRVANGATNC---EALIREALRA 202


>gi|29347388|ref|NP_810891.1| Holliday junction DNA helicase RuvA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570551|ref|ZP_04847959.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6]
 gi|44888484|sp|Q8A6A7|RUVA_BACTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29339288|gb|AAO77085.1| Holliday junction DNA helicase ruvA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251839500|gb|EES67583.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6]
          Length = 201

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177
            A R++ +LK K  ++ + V    +        +    S  +   A++AL  LG+    +
Sbjct: 119 TAQRVIVDLKDKIKTMGATVAGGSASAG----MLLQSASVEVQEEAVAALTMLGFAAAPS 174

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V+++LK+E + A   ++I+LAL+
Sbjct: 175 QKVVLAILKEEPD-APVEKVIKLALK 199


>gi|285019190|ref|YP_003376901.1| holliday junction resolvasome, DNA-binding subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474408|emb|CBA16909.1| putative holliday junction resolvasome, dna-binding subunit protein
           [Xanthomonas albilineans]
          Length = 194

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYEMEAPMSTFYDLPDVGREVILFTHYAHKEDSVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++       I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQRVTGIGAKIALAVLSGVSVDAFARLITAADVTALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A R++ EL+ +A   S           +  A   S       A SAL  LGY
Sbjct: 121 AERMVVELRDRAADFSG----GAPITGQLGADAVS------EATSALQQLGY 162


>gi|332993889|gb|AEF03944.1| Holliday junction DNA helicase motor protein [Alteromonas sp. SN2]
          Length = 206

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+D  GV Y I+ P+ +   L  +G+   ++    +R+D   L
Sbjct: 1   MIGRIRGTLAEKQPPEILVDANGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA--QIPGISM 118
           FGF   ++R  F  L    GVG ++ + +LS ++A + + ++  QN+ V A   +PGI  
Sbjct: 61  FGFADKMERGLFRELIKANGVGPKLGLTILSGMSAGQFLSAV--QNADVSALVSLPGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYG 173
           K A R++ ELK +      V  Q ++        + +     +N     A SALV LGY 
Sbjct: 119 KTAERLVVELKDRLAKFGKV--QSIAIPPPSGDLLNTNTLVEVNDTREDAQSALVALGYK 176

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             QA+  + SV K+     +   +IR AL+A
Sbjct: 177 PAQASKLIDSVYKEG---MESESLIREALKA 204


>gi|262202231|ref|YP_003273439.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM
           43247]
 gi|262085578|gb|ACY21546.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM
           43247]
          Length = 197

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 14/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +ID  GV Y +     TLS L + G+  TL     +R+D + L
Sbjct: 1   MIASVRGPVLEVALDHAVIDCGGVGYRVLATPVTLSRL-RRGEESTLLTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM  L+ +    L  ++   ++K +  +PGI  ++
Sbjct: 60  YGFTEPDARALFALLQTVTGVGPRLAMATLAVLEPEALRRALAESDTKALTSVPGIGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179
           A R++ EL+ K           +     E A     P      ++ ALV LG+    A  
Sbjct: 120 AERLVVELRDK-----------VDRPTGESAVGVVAPGGVREQVADALVGLGFTAGPAEK 168

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
           AV +VL    + AD S  +R +L
Sbjct: 169 AVAAVLADHPD-ADASTALRQSL 190


>gi|34763029|ref|ZP_00144004.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|237742027|ref|ZP_04572508.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13]
 gi|256845368|ref|ZP_05550826.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2]
 gi|294785335|ref|ZP_06750623.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27]
 gi|27887289|gb|EAA24385.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|229429675|gb|EEO39887.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13]
 gi|256718927|gb|EEU32482.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2]
 gi|294487049|gb|EFG34411.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27]
          Length = 194

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 1/145 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145
           A  I+ +LKGK  +L    ++ +S 
Sbjct: 120 AQIIILDLKGKLKNLIYTEEETVSM 144


>gi|323344791|ref|ZP_08085015.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           oralis ATCC 33269]
 gi|323094061|gb|EFZ36638.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           oralis ATCC 33269]
          Length = 204

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 24/216 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  I+G +  L     +++V G+ Y +   + T S + GK  +   L+V     T  R 
Sbjct: 1   MIEYIRGELAELTPALAVVEVAGIGYALSISLNTYSAIQGK--EKVKLYVHEALVTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF S  +R+ + LL +V GVGA  A  +LS I+  EL   I   + +++  + G
Sbjct: 59  DSFTLYGFASKQERELYRLLITVSGVGANTARMILSTISPAELCNVIANGDERMLKAVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVN 169
           I ++ A RI+ +LK K      +V   ++     + H+ S P+  +N      A+SAL  
Sbjct: 119 IGLRTAQRIIVDLKDK------IVNSGIAT----ELHVSSEPAAMVNNGIKDEAVSALTM 168

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           LG+    +  AV  +LK + ++  + Q+++LAL+ I
Sbjct: 169 LGFSPAPSAKAVTEILKADPDLPVE-QVVKLALKQI 203


>gi|255691218|ref|ZP_05414893.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM
           17565]
 gi|260623130|gb|EEX46001.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM
           17565]
          Length = 201

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KTCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLK 118

Query: 120 IASRIMTELKGK-------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
            A R++ +LK K       A   S+V    +   N E             A++AL  LG+
Sbjct: 119 TAQRVIVDLKDKIKTMGASAAGGSAVGGMLLQAANAEVQE---------EAVAALTMLGF 169

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
               +   V+++LK+E   A   ++I+LAL+
Sbjct: 170 AAAPSQKVVLAILKEEPE-APVEKVIKLALK 199


>gi|161506974|ref|YP_001576928.1| Holliday junction DNA helicase RuvA [Lactobacillus helveticus DPC
           4571]
 gi|172048184|sp|A8YTI1|RUVA_LACH4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160347963|gb|ABX26637.1| Holliday junction DNA helicase [Lactobacillus helveticus DPC 4571]
          Length = 196

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 15/173 (8%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           Y+++DV GV Y +Y P  T     K GD   +F+E  +R   I L+GF S+ D+  F+ L
Sbjct: 16  YIVVDVNGVGYKVYSP--TPFAYQK-GDKAKIFIEQVVRDTGITLYGFQSEDDKGLFLKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV G+G + A+ +++   A  L E+I     K + + PG+  K AS+I+ +LKGK   L
Sbjct: 73  LSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---L 129

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQ---DQATTAVVSV 184
              V + +   ++EQ +I    S A+N A+ AL+ LGY Q   D+ TT +  V
Sbjct: 130 RDYVAR-LDRQDEEQGNI----SPALNDALLALIALGYTQKEVDRITTKLEEV 177


>gi|261365694|ref|ZP_05978577.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996]
 gi|288565789|gb|EFC87349.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996]
          Length = 194

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGRLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS ++A EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178
           A R++ EL+GK +S ++                 + P+     + ++ L+ LGY + +A 
Sbjct: 121 AERMVLELRGKLVSHATA-----------DGLFAATPAADETDDIVNTLIALGYNEREAK 169

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            A+  + K      +  + +RLAL+
Sbjct: 170 AAIKGIPKG----TEVGEGVRLALK 190


>gi|83816675|ref|YP_444603.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855]
 gi|294506349|ref|YP_003570407.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8]
 gi|123726210|sp|Q2S5C8|RUVA_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83758069|gb|ABC46182.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855]
 gi|294342677|emb|CBH23455.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8]
          Length = 202

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D  L+DV G+ Y ++ P  T   L    +  TL    ++R+D   L
Sbjct: 1   MIDYVSGTLVDKTTDSALVDVNGLGYRVHVPTSTYKRLPDTDEEVTLHTYHYLREDDESL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +  V  VG ++A+  LS +T TEL + ++  +   + QI G+  K 
Sbjct: 61  YGFATKAERTVFETMTGVSRVGPKLALSALSAMTPTELRDHVMEGDKSRLTQISGVGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   L   V +D S ++       +      +A+ AL  LG  +  A  +
Sbjct: 121 ADRLIVELRDRLADLD--VLEDTSPLS---GGSDARAEARADALEALTELGLSKADAERS 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  VL+    I    +++R AL+A
Sbjct: 176 IRQVLRDNAGIQSADELVRRALKA 199


>gi|28211817|ref|NP_782761.1| Holliday junction DNA helicase RuvA [Clostridium tetani E88]
 gi|44888475|sp|Q891Z7|RUVA_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28204259|gb|AAO36698.1| holliday junction DNA helicase ruvA [Clostridium tetani E88]
          Length = 197

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+++DY+ ++  G+ Y I+    TL    +  +   L+++   R D I L
Sbjct: 1   MYDYIKGIYKGMHKDYITVENNGIGYKIFTSGNTLYETPEKDEEIKLYIQQIPRDDSINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R  F LL ++ GVGA+ ++ +LS  +  +L  SI+ +++ ++ + PGI  K 
Sbjct: 61  YGFFTEEERDMFNLLMTISGVGAKSSLSLLSVTSINKLKYSIVTEDTTLLTRAPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ ELK K  +   +   D        Q H       +  A+ AL++LGY Q ++  
Sbjct: 121 AERIILELKDKFKNDDIISDIDDLDSISNFQLH-------SAEALEALMSLGYSQKESEK 173

Query: 180 AVVSVLKKEKNIAD 193
           A+ +V  KE ++ D
Sbjct: 174 ALKNV-DKENSLED 186


>gi|295839916|ref|ZP_06826849.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74]
 gi|197696745|gb|EDY43678.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74]
          Length = 206

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 23/216 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V G+   + C   TLS L +IG+   +     +R+D + L
Sbjct: 1   MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+ ++   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNK----EQAHICSMPSFAINAISALVNLGYG 173
           A +++ ELK   G+ +   ++  Q  +        EQ H            +ALV LGY 
Sbjct: 120 AQKLILELKDRLGQPLGTGTLGAQRRAAAGPAPWTEQLH------------NALVGLGYQ 167

Query: 174 QDQATTAVVSVLKK---EKNIADDSQIIRLALRAIS 206
             +A  AV +V  +   ++ + +   ++R AL+ ++
Sbjct: 168 PREAEEAVEAVTPQAEAQEGVPEIGPLLRAALQTLN 203


>gi|54294187|ref|YP_126602.1| holliday junction DNA helicase [Legionella pneumophila str. Lens]
 gi|54297206|ref|YP_123575.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str.
           Paris]
 gi|148358830|ref|YP_001250037.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str.
           Corby]
 gi|296106875|ref|YP_003618575.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99
           Alcoy]
 gi|81368758|sp|Q5WX47|RUVA_LEGPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81370703|sp|Q5X5R9|RUVA_LEGPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230562|sp|A5IBE1|RUVA_LEGPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|53750991|emb|CAH12402.1| holliday junction DNA helicase [Legionella pneumophila str. Paris]
 gi|53754019|emb|CAH15490.1| holliday junction DNA helicase [Legionella pneumophila str. Lens]
 gi|148280603|gb|ABQ54691.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str.
           Corby]
 gi|295648776|gb|ADG24623.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610000|emb|CBW99532.1| holliday junction DNA helicase [Legionella pneumophila 130b]
          Length = 199

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G I   ++   L+ DV GV Y +   + T   +        L + T +R+D + 
Sbjct: 1   MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPIGLHIHTIVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVG ++AM VLS I+  E ++ I  +N+ ++ ++PGI  K
Sbjct: 61  LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++       S+ Q D S  +  Q    S  S    AISAL  LGY   +A  
Sbjct: 121 TAERLVVEMR------DSIKQFDGSVSDTFQKQAGSTHS-QQEAISALEALGYKPQEAWK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            V  +    K+     Q+IR AL+ +S 
Sbjct: 174 VVNKIDNGNKSC---EQLIREALQILSS 198


>gi|283853683|ref|ZP_06370914.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B]
 gi|283570924|gb|EFC18953.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B]
          Length = 201

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 23/214 (10%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +    E + +++   GV Y +  P    + L   G    LFV T +R+D + 
Sbjct: 1   MIGYVEGRVLARRERWAIVLTPGGVGYELELPDPVAAALPPQGGQVCLFVHTVVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  DR+ F  L  +  +G R A+ +LSR T  +L+  +   ++  + ++PGI  K
Sbjct: 61  LFGFATLDDRETFRTLIGITKLGPRTALAILSRFTTEDLLRIVATGDADALVRVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------NAISALVNLGYG 173
            A RI  EL  K                + +  + + P  AI      + I+ L NLGY 
Sbjct: 121 SAQRIFIELTYKL---------------EGKGPVSAGPHPAIGGGVLADVIAGLTNLGYP 165

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
              A+    +VL+ E ++ D +Q +R AL+ ++ 
Sbjct: 166 DADASRVAGAVLEAEPDL-DVAQALRQALKRLAS 198


>gi|322832435|ref|YP_004212462.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602]
 gi|321167636|gb|ADW73335.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602]
          Length = 204

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVHMPMTCFYELPELGQEAIIFTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEKEEITALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + + +    +   +  S A   A++AL++LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNHTDITLPASASKAKESDAEGEAVAALISLGYKPPEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V K     A+   +IR ALRA
Sbjct: 181 MISKVAKPG---AESETLIREALRA 202


>gi|317154312|ref|YP_004122360.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944563|gb|ADU63614.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 203

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +   ++   VL+   GV Y +  P   L+ L   G   +LFV T + +  I 
Sbjct: 1   MIGYLQGTLLAAHDKGLVLLTPGGVGYEVAAPTSVLARLPGRGGEVSLFVHTQVGEKAID 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL   D   F  L S+  +G + A+ +LS   A  L E    +++  ++ +PGI  K
Sbjct: 61  LFGFLESDDLDLFRTLISIDKLGPKKALAILSMFDAEHLREVAYREDATTLSTVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LK K   LS    +  + V   +          ++ ++ L  LGY +D+   
Sbjct: 121 SAKQILWHLKDKVNKLSPAPSRGSAKVEGPRGEY-------LDTLAGLKGLGYSEDEVRP 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            ++ +   E ++ D +  IR  LR I+ 
Sbjct: 174 MILEIFDAEPDL-DAAGAIRATLRKIAA 200


>gi|253989949|ref|YP_003041305.1| Holliday junction DNA helicase RuvA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639070|emb|CAR67683.1| holliday junction atp-dependent dna helicase ruva (ec 3.6.1.-)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781399|emb|CAQ84562.1| holliday junction ATP-dependent DNA helicase RuvA [Photorhabdus
           asymbiotica]
          Length = 205

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L  IG    LF    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDIGQETVLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N         S       A +ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPATAKQTTSDADIEAEAAAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V+K     AD   +IR ALRA+
Sbjct: 181 RMVSKVVKPG---ADCETLIREALRAV 204


>gi|208779418|ref|ZP_03246764.1| holliday junction DNA helicase RuvA [Francisella novicida FTG]
 gi|254372980|ref|ZP_04988469.1| hypothetical protein FTCG_00553 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570707|gb|EDN36361.1| hypothetical protein FTCG_00553 [Francisella novicida GA99-3549]
 gi|208745218|gb|EDZ91516.1| holliday junction DNA helicase RuvA [Francisella novicida FTG]
 gi|332678321|gb|AEE87450.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida Fx1]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-------NKEQAHICSMPSFAI--NAISALVNLG 171
           A R++ E+  K + +++ +    S           +QA   ++ + +I   ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +      A   ++IR AL+
Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209


>gi|315126271|ref|YP_004068274.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp.
           SM9913]
 gi|315014785|gb|ADT68123.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp.
           SM9913]
          Length = 205

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 22/200 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L K+GD   ++    +R+D   L
Sbjct: 1   MIGRLNGVLVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGDNAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L    GVG ++ + +LS ++A + V  +  +++  + ++PG+  K 
Sbjct: 61  FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATALVKLPGVGKKT 120

Query: 121 ASRIMTELKGK----------AISLSSVVQQ--DMSCVNKEQAHICSMPSFAINAISALV 168
           A R++ E+K +            S S+V++   D +  N          + A +A+SALV
Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPASDATIAN----------NAADDAVSALV 170

Query: 169 NLGYGQDQATTAVVSVLKKE 188
            LGY   QA  AV SV K +
Sbjct: 171 ALGYKLPQAQKAVKSVSKPD 190


>gi|255066950|ref|ZP_05318805.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256]
 gi|255048775|gb|EET44239.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256]
          Length = 194

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 104/203 (51%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS ++A EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S ++      +    ++           + ++ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVSHAAADGLFAAAPAADETD---------DIVNTLIALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  + K      +  + +RLAL+
Sbjct: 172 IKGIPKG----TEVGEGVRLALK 190


>gi|161936318|ref|YP_129329.2| Holliday junction DNA helicase RuvA [Photobacterium profundum SS9]
 gi|90135510|sp|Q6LT49|RUVA_PHOPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 206

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 14/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD---FCTLFVETHMRQDQ 57
           MIG++ G I       VLIDV G+ Y +  P+     L ++G     CT F+   +R+D 
Sbjct: 1   MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFI---VREDA 57

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF    +R+ F  +    GVG ++ + +LS +TA++ V S+  ++   + +IPG+ 
Sbjct: 58  QLLYGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVG 117

Query: 118 MKIASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            K A R++ E    LKG           D +  N E     S  +    A+SAL+ LGY 
Sbjct: 118 KKTAERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARA-EDEAVSALIALGYK 176

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             QA   V  V+K E +      IIR ALR++
Sbjct: 177 ALQAAKVVSQVVKPEMS---SENIIREALRSM 205


>gi|282892421|ref|ZP_06300771.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497823|gb|EFB40184.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 200

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 7/189 (3%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           +I+  G+ Y I+ P  T   L +IG    L+V   +R+    L+GF S  +R+ F +L +
Sbjct: 18  VIETSGIGYKIFIPTSTFGKLAQIGQNVQLYVSFVIREQSQTLYGFFSAEERELFEILLA 77

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-AISLS 136
           V G+G + A+ ++  + +T L  +I  Q+   ++++PG+  K A R++ ELK K  I + 
Sbjct: 78  VSGIGPKTAIALIGHLPSTLLSAAIQGQDITTLSKVPGVGKKTAERLIVELKDKLKIGVH 137

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
              +   +    E++   +      +A++AL +LGY Q  A  A+   LK+     D + 
Sbjct: 138 PAAELVTATPFSEKSQTIT------DALNALTHLGYNQAIAKQAIQKTLKEHSTDIDLAT 191

Query: 197 IIRLALRAI 205
           +I   L+ I
Sbjct: 192 LITSTLKHI 200


>gi|15641848|ref|NP_231480.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591344|ref|ZP_01678632.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80]
 gi|121730273|ref|ZP_01682649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52]
 gi|147675231|ref|YP_001217380.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395]
 gi|153824054|ref|ZP_01976721.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|227081975|ref|YP_002810526.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2]
 gi|229508057|ref|ZP_04397562.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286]
 gi|229511704|ref|ZP_04401183.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|229518843|ref|ZP_04408286.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9]
 gi|229607618|ref|YP_002878266.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236]
 gi|254848932|ref|ZP_05238282.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10]
 gi|255745394|ref|ZP_05419343.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101]
 gi|298498115|ref|ZP_07007922.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757]
 gi|20455267|sp|Q9KR01|RUVA_VIBCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172047659|sp|A5F761|RUVA_VIBC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767399|sp|C3LNE9|RUVA_VIBCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|9656374|gb|AAF94994.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546808|gb|EAX56974.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80]
 gi|121627975|gb|EAX60536.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52]
 gi|126518426|gb|EAZ75649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|146317114|gb|ABQ21653.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395]
 gi|227009863|gb|ACP06075.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2]
 gi|227013744|gb|ACP09954.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395]
 gi|229343532|gb|EEO08507.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9]
 gi|229351669|gb|EEO16610.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|229355562|gb|EEO20483.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286]
 gi|229370273|gb|ACQ60696.1| holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236]
 gi|254844637|gb|EET23051.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10]
 gi|255737224|gb|EET92620.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101]
 gi|297542448|gb|EFH78498.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757]
          Length = 204

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A + S P  A N    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|298385152|ref|ZP_06994711.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14]
 gi|298262296|gb|EFI05161.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14]
          Length = 201

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  L     +ID  GV Y     + T S + GK    C L++   +R+D   
Sbjct: 1   MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K
Sbjct: 59  LYGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177
            A R++ +LK K  ++ + V    +        +    S  +   A++AL  LG+    +
Sbjct: 119 TAQRVIVDLKDKIKTMGATVAGGSASAG----MLLQSASVEVQEEAVAALTMLGFAAAPS 174

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V+++LK+E + A   ++I+LAL+
Sbjct: 175 QKMVLAILKEEPD-APVEKVIKLALK 199


>gi|238898994|ref|YP_002924676.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259495647|sp|C4K7I5|RUVA_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229466754|gb|ACQ68528.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 204

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 110/213 (51%), Gaps = 20/213 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG I      ++L+D+QG+ Y I  P+     L ++G    +F    +R+D   L
Sbjct: 1   MISRMKGIILEKQPPWILLDIQGMGYDIQLPMTCFYQLPELGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++ + +LS +++ E + ++  ++   + ++PG+  K 
Sbjct: 61  YGFHHPKERAMFSELIKVNGVGPKLGLAILSGMSSEEFICALEKEDISNLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A R++ E+K +  +L+     S     +S V+ +     S  S    AISAL++LGY   
Sbjct: 121 AERLLVEMKDRIKNLNKNLFKSTADHMLSSVSTD----LSAKSAEAEAISALISLGYKPQ 176

Query: 176 QATTAVVSVLKKEKNIAD---DSQ-IIRLALRA 204
           +A   +       KNIA    DSQ +I+ ALR+
Sbjct: 177 EAAQLI-------KNIAQPDLDSQALIKHALRS 202


>gi|302879788|ref|YP_003848352.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans
           ES-2]
 gi|302582577|gb|ADL56588.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans
           ES-2]
          Length = 193

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DVQGV Y +  P+ T   L  + +   L  +  +R+D   L
Sbjct: 1   MIGRLSGILLEKTPPQILLDVQGVGYELEVPMSTFYNLPPLHEKVVLHTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVG ++A+ VLS ++  +L +++  + +  + +IPG+  K 
Sbjct: 61  YGFGSTDERIAFRQLLKISGVGPKLALSVLSGLSLNDLADAVANKEAGRLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK            + +    AH   + S + + ++AL  LGY   +A  A
Sbjct: 121 AERLLLELEGK-----------FTVMGVAMAHGVPVTSASGDIVNALQALGYNDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               L K+ +++D    IR AL+ +S
Sbjct: 170 AKQ-LPKDVSVSDG---IRQALKFLS 191


>gi|209524253|ref|ZP_03272803.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328]
 gi|209495344|gb|EDZ95649.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328]
          Length = 206

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 27/209 (12%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG + G + G+Y+      ++ +DV GV Y +    R  +   KIG+   +F   H+R 
Sbjct: 1   MIGYLNGTVAGIYKKTGNRVFLWLDVNGVGYELQILPRMQNLDAKIGENLQVFTHLHIRD 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D + L+GF S  +R  F  L SV G+G ++A+ +L  +   +LV++I+  N+ ++ + PG
Sbjct: 61  DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLALPDLVQAIVGGNTGILTKTPG 120

Query: 116 ISMKIASRIMTELKG------KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           +  K A RI  ELK       K   L +V   ++S   +E+  I            +L+ 
Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAEIQEEVEI------------SLLA 168

Query: 170 LGYGQDQATTAVVSVLKK----EKNIADD 194
           LGY   +   A+ ++       E N A+D
Sbjct: 169 LGYTTSEVMQALKAITSHPNLSENNSAED 197


>gi|187735908|ref|YP_001878020.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425960|gb|ACD05239.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 220

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 107/208 (51%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           MI  ++G +   Y   +++DV GV Y +  P+ T   L  + G   TL    H+R++   
Sbjct: 24  MIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDRLNPLPGRELTLKTYLHVRENMQV 83

Query: 60  LFGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           L+GF +D +R  F+LL + V G+G   A+ +L  ++  +  ++++  +   IA+  G+  
Sbjct: 84  LYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSVEQFKQAVVGGDVSGIARAKGVGK 143

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A RI+ ELK K + L++  +        + A    +         AL+ LG+ Q ++ 
Sbjct: 144 KTAERIVLELKDK-VGLAATWEAQAQGATSQAAGDAEL---------ALIALGFKQVESR 193

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+ + LK   + AD  ++IR ALR+++
Sbjct: 194 KAIAAHLKDHPD-ADVDELIRAALRSMN 220


>gi|229515226|ref|ZP_04404686.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21]
 gi|229347931|gb|EEO12890.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21]
          Length = 204

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A + S P  A N    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPTTDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|157145359|ref|YP_001452679.1| Holliday junction DNA helicase RuvA [Citrobacter koseri ATCC
           BAA-895]
 gi|166230539|sp|A8AFI0|RUVA_CITK8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157082564|gb|ABV12242.1| hypothetical protein CKO_01099 [Citrobacter koseri ATCC BAA-895]
          Length = 203

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L + G   T+F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPESGKEATVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|269468816|gb|EEZ80420.1| Holliday junction resolvasome, DNA-binding subunit [uncultured
           SUP05 cluster bacterium]
          Length = 195

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 22/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L++V G+ Y I CP+ +   +G   +  +L    H+++D   L
Sbjct: 1   MIGQLTGKILEKNPPEILLEVGGIGYEILCPMSSFYEMGS-NENISLHTHFHVKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  ++  F  L  V G+G +VA+ +LS +    L+ ++  ++  ++A+ PGI  K 
Sbjct: 60  YGFISKDEKILFRELIRVNGIGPKVALAILSHLNVASLMNAVANEDDALLAKTPGIGKKT 119

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +++ ELK +   + LSS   Q ++  N       S P+  I A  AL  LG+   +A 
Sbjct: 120 AQKLIVELKDRLEKLELSSSAHQIITASN-------SNPN-TIKASQALQALGFKTKEAD 171

Query: 179 TAVVSVLKKEKNIADDS----QIIRLALR 203
             + +       I DDS    ++IR AL+
Sbjct: 172 RMLNA-------INDDSLSIEELIRKALQ 193


>gi|332292213|ref|YP_004430822.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170299|gb|AEE19554.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 193

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  + G +      +V++D  GV Y I   + T    G++GD   L + TH+  ++D  
Sbjct: 1   MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTF---GRLGDSEALKLHTHLQVKEDSH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF+  ++R+ F LL SV G+GA  A  +LS +   ++ ++I   +   I  I GI  
Sbjct: 58  TLFGFVEVMEREIFRLLLSVSGIGASTARTMLSSLDPHQIKQAIASNDVATIQSIKGIGA 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ +LK K + +      DMS  +  Q++          A+SAL  LG+ + QA 
Sbjct: 118 KTAQRVILDLKDKILKV-----YDMSSESAVQSNTSKE-----EALSALETLGFARKQAE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
               +++ KEK  A    II+ AL+ +
Sbjct: 168 KVCTAIV-KEKPDASVETIIKEALKKL 193


>gi|90408541|ref|ZP_01216698.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3]
 gi|90310360|gb|EAS38488.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3]
          Length = 207

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+DV GV Y I  P+ +   L ++G    ++    +R+D   L
Sbjct: 1   MIGRLRGVLLEKQPPEVLLDVSGVGYEIQLPMSSFYPLPEVGQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F LL  V GVG ++A+ +LS ++A E V  I  +    + ++PG+  K 
Sbjct: 61  YGFADKHERAMFRLLIKVNGVGPKLALAILSGMSANEFVVCINNEAVSQLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-------AHICSMPSFAINAISALVNLGYG 173
           A R++ E+K +   L + V  D+     E        ++  S+ +    AISAL+ LGY 
Sbjct: 121 AERLVVEMKDR---LKNWVGTDLLSPQAESMDMQNGLSNTLSINTAKDEAISALLALGYK 177

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
              A   + +V +   +  D   +IR AL+++
Sbjct: 178 PASAEKCIRNVYQAGMDCED---LIRSALKSM 206


>gi|77360814|ref|YP_340389.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas
           haloplanktis TAC125]
 gi|90135604|sp|Q3IIJ1|RUVA_PSEHT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76875725|emb|CAI86946.1| Holliday junction helicase, subunit A [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 205

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 22/200 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L K+G+   ++    +R+D   L
Sbjct: 1   MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGESAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++R  F  L    GVG ++ + +LS ++A + V  +  ++S  + ++PG+  K 
Sbjct: 61  FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDSTSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGK----------AISLSSVVQQ--DMSCVNKEQAHICSMPSFAINAISALV 168
           A R++ E+K +            S S+V++   D +  N            A +A+SALV
Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPFSDATIANNA----------ADDAVSALV 170

Query: 169 NLGYGQDQATTAVVSVLKKE 188
           +LGY   QA  AV SV K +
Sbjct: 171 SLGYKLPQAQKAVKSVSKPD 190


>gi|148657871|ref|YP_001278076.1| Holliday junction DNA helicase RuvA [Roseiflexus sp. RS-1]
 gi|166200257|sp|A5UZS3|RUVA_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148569981|gb|ABQ92126.1| Holliday junction DNA helicase subunit RuvA [Roseiflexus sp. RS-1]
          Length = 197

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 75/131 (57%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  D+V+++  G+ ++IY P   ++ LG IG    LF    +R+D + L
Sbjct: 1   MIASIRGILIAVAADHVVVETGGIGWMIYAPRPVIAALGDIGATVRLFTYLLVREDSLTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   RQ F  L SV GVG + A+ +LS  T  EL  +I   +   +A+ P I  K+
Sbjct: 61  YGFETVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVTRLARTPRIGKKL 120

Query: 121 ASRIMTELKGK 131
           A R++ ELKGK
Sbjct: 121 AERLVLELKGK 131


>gi|320352803|ref|YP_004194142.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM
           2032]
 gi|320121305|gb|ADW16851.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM
           2032]
          Length = 208

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 10/211 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++    +  ++DV GV Y +   +RT   L ++G  C L V+T +R+D I L
Sbjct: 1   MIASLSGLVQWKGPNMAILDVNGVGYELCISVRTYDALPEVGGTCFLLVQTVVREDAISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F+LL +V G+G ++A  +LS I    L  +I  ++   +  +PG+  K 
Sbjct: 61  YGFSRKEEKDLFLLLITVSGIGPKLAQTILSGIGVEALCGAITAKDLSQLTALPGVGKKT 120

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R+  EL  K   I     ++     V               +A SAL+NLGY Q  A 
Sbjct: 121 AQRLCVELGEKVGGIGAGLAIEGTPPLVAPAGDS-----QVMADAASALINLGYPQAIAW 175

Query: 179 TAVVSV---LKKEKNIADDSQIIRLALRAIS 206
            A+ +V   L    +     ++IR ALR+++
Sbjct: 176 QALRNVEQQLPPGTDAPRVEELIRQALRSLA 206


>gi|160915302|ref|ZP_02077515.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991]
 gi|158433101|gb|EDP11390.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991]
          Length = 193

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     D ++I+  G+ Y IY  I     + ++     L+   H+R+D I L
Sbjct: 1   MIAFIKGIIHSYSNDSLIIENNGIGYRIY--ISNPQSV-RLNSEVILYTYQHVREDAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F+ L SV+GVG + A+ +L+     +++E+I   + K++  +PGI  K 
Sbjct: 58  FGFTTMEEHDLFLQLISVKGVGPKTALAMLAVCPVKQMIEAIEHNDVKLLKSLPGIGAKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +   S +Q       KE A +       ++AI AL  LGY       A
Sbjct: 118 ASQIVLDLKGKLVEEVSEIQV------KENAEL-------VDAIEALKALGY-----KNA 159

Query: 181 VVSVLKK---EKNIADDSQIIRLAL 202
            ++ +KK   E++ A   Q IR AL
Sbjct: 160 EINSIKKELSEESFATSDQYIRKAL 184


>gi|332878178|ref|ZP_08445907.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683916|gb|EGJ56784.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 194

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V+ID QGV Y +   + T + L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLVEKNPTNVVIDCQGVGYFVNISLNTYAALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA ++  +I+      I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLISVSGVGAGTARTMLSSLTAAQVRNAIVNGEVATIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L     QD +      A I ++ +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKL-----QDFA-----DAPISAVSTHKEEALSALEVLGFVRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +++   +      II+ AL+++
Sbjct: 170 VDKIVQAAPDSLSVEDIIKQALKSL 194


>gi|149366014|ref|ZP_01888049.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|153949523|ref|YP_001401004.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           31758]
 gi|161484795|ref|NP_669562.2| Holliday junction DNA helicase RuvA [Yersinia pestis KIM 10]
 gi|161511391|ref|NP_993241.2| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|161760577|ref|YP_070557.2| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           32953]
 gi|162420589|ref|YP_001606843.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola]
 gi|165928362|ref|ZP_02224194.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938889|ref|ZP_02227443.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009183|ref|ZP_02230081.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210491|ref|ZP_02236526.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401440|ref|ZP_02306937.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420007|ref|ZP_02311760.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424505|ref|ZP_02316258.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470862|ref|ZP_02335566.1| Holliday junction DNA helicase motor protein [Yersinia pestis FV-1]
 gi|170024378|ref|YP_001720883.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           YPIII]
 gi|186895407|ref|YP_001872519.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929164|ref|YP_002347039.1| Holliday junction DNA helicase RuvA [Yersinia pestis CO92]
 gi|229894771|ref|ZP_04509951.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Pestoides A]
 gi|229897474|ref|ZP_04512630.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229898120|ref|ZP_04513269.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901979|ref|ZP_04517100.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Nepal516]
 gi|270490837|ref|ZP_06207911.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27]
 gi|294503877|ref|YP_003567939.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           Z176003]
 gi|20455249|sp|Q8ZEU6|RUVA_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90146256|sp|Q66AU0|RUVA_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167012664|sp|A7FIC6|RUVA_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560143|sp|B2K323|RUVA_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560144|sp|A9QYX3|RUVA_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560145|sp|B1JLL1|RUVA_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115347775|emb|CAL20692.1| Holliday junction DNA helicase [Yersinia pestis CO92]
 gi|149292427|gb|EDM42501.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|152961018|gb|ABS48479.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           31758]
 gi|162353404|gb|ABX87352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola]
 gi|165913252|gb|EDR31875.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919645|gb|EDR36978.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991738|gb|EDR44039.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207671|gb|EDR52151.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961702|gb|EDR57723.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049136|gb|EDR60544.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056387|gb|EDR66156.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750912|gb|ACA68430.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           YPIII]
 gi|186698433|gb|ACC89062.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680875|gb|EEO76970.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Nepal516]
 gi|229688836|gb|EEO80903.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229693811|gb|EEO83860.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229702244|gb|EEO90263.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Pestoides A]
 gi|262362004|gb|ACY58725.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           D106004]
 gi|262365859|gb|ACY62416.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           D182038]
 gi|270339341|gb|EFA50118.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27]
 gi|294354336|gb|ADE64677.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           Z176003]
 gi|320015265|gb|ADV98836.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 204

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  +   ++   A    S       A SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 181 LVSKIAKPG---ADCETLIRDALRA 202


>gi|163802051|ref|ZP_02195947.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4]
 gi|159174192|gb|EDP59000.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4]
          Length = 204

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +    S+    D+     + A   S  + + N    AISAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K +       Q+IR AL+++
Sbjct: 178 ASKVVSQIAKPDMT---SEQLIREALKSM 203


>gi|89068047|ref|ZP_01155464.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus
           HTCC2516]
 gi|89046286|gb|EAR52343.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus
           HTCC2516]
          Length = 222

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 29/194 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++    D+VLI V GV Y++Y   R ++ L   G+  +LF +  +R+D ++L
Sbjct: 1   MIGRLTGRLDYRAGDHVLISVGGVGYVVYVSERVMAALPGNGEPVSLFTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  +I L +++ I+   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDARAISVAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-------------------- 160
           A R++ EL+ KA  +       M+     +A +  +P+ A                    
Sbjct: 121 AERVVRELRDKAPGV-------MALGGSIEAALGEVPAAADDGAVLEPADAAPPRAPAGA 173

Query: 161 --INAISALVNLGY 172
              +A+SALVNLGY
Sbjct: 174 AQSDALSALVNLGY 187


>gi|254506186|ref|ZP_05118330.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16]
 gi|219551004|gb|EED27985.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16]
          Length = 223

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 111/210 (52%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +       +LI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 20  VIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 79

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 80  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 139

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+K +    S+    D+     + A + S P+ A N     A+SAL+ LGY   
Sbjct: 140 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPVDSTPT-ATNSAEEEAVSALLALGYKPT 195

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+  V  ++K   +     ++IR AL+++
Sbjct: 196 QASKVVAQIIKPGMS---SEELIRDALKSM 222


>gi|229817634|ref|ZP_04447916.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM
           20098]
 gi|229785423|gb|EEP21537.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM
           20098]
          Length = 205

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 110/211 (52%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +E +     +I+V  V Y +  P   LS L   G    ++   ++ QD I L
Sbjct: 1   MIGSLRGTVEMVDTTQAVIEVGSVGYEVRMPSADLSRL-HTGQETRVWTYLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    ++ F+ L  V GVG +VA+ +LS +TA +L +++   ++  +A+ PGI  K 
Sbjct: 60  YGFLDSSSKKMFLQLIKVNGVGPKVALSLLSTLTANDLAKAVADNDATALAKAPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG +I+L  + ++        Q+   + P  A   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-SINLEDLGEK------APQSGASTDPG-AKQVVEGLMSLGWHQQDAQYA 171

Query: 181 VVSVLKKEKNIA------DDSQIIRLALRAI 205
           V    +    IA      D  Q++RLAL ++
Sbjct: 172 VQEACES-NGIAMPLSQEDVPQVLRLALTSL 201


>gi|296101800|ref|YP_003611946.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056259|gb|ADF60997.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 204

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L   G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L   +       V        S       A++ALV LGY   +A+ 
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPVSDDDAEQEAVAALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K +   A    +IR ALRA
Sbjct: 181 MVSKIAKPD---ASSETLIREALRA 202


>gi|89075787|ref|ZP_01162175.1| Holliday junction DNA helicase motor protein [Photobacterium sp.
           SKA34]
 gi|89048519|gb|EAR54094.1| Holliday junction DNA helicase motor protein [Photobacterium sp.
           SKA34]
          Length = 207

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 11/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+ L++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120

Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E+K      G+    +  +  D +  N       +       A+SALV LGY  
Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPTL--DTAASNAPIQDPSNQARAEDEAVSALVALGYKP 178

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A   V  V + E +      IIR ALR++
Sbjct: 179 QIAAKVVSQVTQPEMS---SEAIIRDALRSM 206


>gi|319442165|ref|ZP_07991321.1| Holliday junction DNA helicase RuvA [Corynebacterium variabile DSM
           44702]
          Length = 214

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 15/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G +     D+V+I+  GV Y+     RTL+ L + G+   +FV T M  R+D  
Sbjct: 1   MIASLRGAVVDKGLDHVVIECAGVGYLCQATARTLADLPR-GE--EVFVLTTMVVREDSQ 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+ F     R+ F L+QSV GVGAR+AM +LS +T  E+  ++   + K + + PG+  
Sbjct: 58  TLYAFPDVASRELFALVQSVSGVGARMAMALLSVLTPAEIAAAVAEGDVKTLQRAPGVGK 117

Query: 119 KIASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           ++A R+  +LKGK    A++  S    D   +    A +    +     + ALV LG+ +
Sbjct: 118 RLADRMSVDLKGKLDAYAVAQPSGAPGDAVDLTSGDAAVDD--AVTAQVVEALVGLGFPE 175

Query: 175 DQATTAVVSVLKK----EKNIADDSQIIRLAL 202
             A   V S++ +    + +  D S ++R AL
Sbjct: 176 ASAADTVTSLVAETGGGDGSSPDASVLLRSAL 207


>gi|189499398|ref|YP_001958868.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides
           BS1]
 gi|229560017|sp|B3ELQ8|RUVA_CHLPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189494839|gb|ACE03387.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides
           BS1]
          Length = 200

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 7/190 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  +I+V GV Y++     T   L + G    +    H+++D ++L
Sbjct: 1   MFTYFRGELIEASPDEAVIEVSGVGYLLSISATTYRQLPEPGREVLVLAHLHVKEDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL + +RQ F LL S+ GVG ++A+ +LS +   E+ E+I+    + + +I G+  K 
Sbjct: 61  FGFLEEEERQLFRLLLSISGVGPKLALAILSGLQVHEIQEAIVSNMPERLFEITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + L        S   K  + + S  S   +A++ALV LG+ +  A  A
Sbjct: 121 AARIVLELRDRILKLRP------SGGTKSVSRL-SESSMRDDAVNALVTLGFLRSVAQKA 173

Query: 181 VVSVLKKEKN 190
           V   L   +N
Sbjct: 174 VTESLTSLRN 183


>gi|227888712|ref|ZP_04006517.1| crossover junction endoribonuclease subunit A [Lactobacillus
           johnsonii ATCC 33200]
 gi|227850739|gb|EEJ60825.1| crossover junction endoribonuclease subunit A [Lactobacillus
           johnsonii ATCC 33200]
          Length = 192

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 14/193 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +Y  Y+++DV GV Y I CP        +     T++VE  +R   I L
Sbjct: 1   MFEYLKGIVTKIYPAYIVLDVNGVGYKILCPTPYSYDENQP---ATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK              V K  A     PS   +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKL----------GDYVKKSAAAADLTPSLQ-DALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIAD 193
              + K  +N AD
Sbjct: 167 TPKLAKLPENTAD 179


>gi|254490165|ref|ZP_05103356.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxidans
           DMS010]
 gi|224464651|gb|EEF80909.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxydans
           DMS010]
          Length = 198

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       +++DV GV Y +  P+ T   L  + D  TLF    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPELVLDVHGVGYELSAPMSTFFNLPALNDEVTLFTHMVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F ++ +R  F  L  V GVGA++A+ +LS         S+   ++  + ++PG+  K 
Sbjct: 61  YAFATERERLLFRSLLKVNGVGAKLALTILSGSDVDTFARSVQEGDTASLTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   +SS +  D    +    H+         A+ ALV LGY   +A   
Sbjct: 121 AERLIVEMRDRLKEVSSAMGLDAIVTD----HVKPAAGAKSEAVEALVALGYKAAEADKM 176

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + S   +  N     Q+IR AL+
Sbjct: 177 LRSFDTEGMNT---EQLIRQALQ 196


>gi|118497616|ref|YP_898666.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. novicida U112]
 gi|195536317|ref|ZP_03079324.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           novicida FTE]
 gi|166230552|sp|A0Q6P7|RUVA_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118423522|gb|ABK89912.1| holliday junction DNA helicase, subunit A [Francisella novicida
           U112]
 gi|194372794|gb|EDX27505.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           novicida FTE]
          Length = 216

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-------NKEQAHICSMPSFAI--NAISALVNLG 171
           A R++ E+  K + +++ +    S           +QA   ++ + +I   ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +      A   ++IR AL+
Sbjct: 181 YKQKDAEKMSRSAMGDATTAA---EVIRKALQ 209


>gi|56751811|ref|YP_172512.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC
           6301]
 gi|81301107|ref|YP_401315.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC
           7942]
 gi|81561725|sp|Q5N128|RUVA_SYNP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123769196|sp|Q31KU1|RUVA_SYNE7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56686770|dbj|BAD79992.1| holliday junction DNA helicase RuvA [Synechococcus elongatus PCC
           6301]
 gi|81169988|gb|ABB58328.1| Holliday junction DNA helicase subunit RuvA [Synechococcus
           elongatus PCC 7942]
          Length = 207

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 4/135 (2%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G++ G+ +      +L+DVQGV Y +  P R+L  L   G    +F    +R+D
Sbjct: 1   MIGYLQGSLAGVRKQSGRLLLLLDVQGVGYEVQTPARSLVELPAAGQSLQVFTHLQVRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q  LFGFL   +R  F  L SV G+G ++ + +L  ++  ELV++I+  N++++++ PG+
Sbjct: 61  QWLLFGFLQMAERDLFRQLISVSGIGPQLGLALLDSLSLAELVQAIVAGNTRLLSRTPGV 120

Query: 117 SMKIASRIMTELKGK 131
             K A R+  EL+ K
Sbjct: 121 GAKTAERLALELRSK 135


>gi|332161518|ref|YP_004298095.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665748|gb|ADZ42392.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860793|emb|CBX71080.1| holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           enterocolitica W22703]
          Length = 205

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  IG    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  ++  +    ++   +    I   A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNIGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RLVSKIAKPG---ADCEALIRDALRA 203


>gi|90580117|ref|ZP_01235925.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14]
 gi|90439002|gb|EAS64185.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14]
          Length = 207

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 11/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+ L++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120

Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E+K      G+    +  +  D +  N       +       A+SALV LGY  
Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPAL--DTAASNAPIQDPSNQARAEDEAVSALVALGYKP 178

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A   V  V + E +      IIR ALR++
Sbjct: 179 QIAAKVVSQVTQPEMS---SEAIIRDALRSM 206


>gi|153217384|ref|ZP_01951135.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587]
 gi|153830574|ref|ZP_01983241.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39]
 gi|229520306|ref|ZP_04409732.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80]
 gi|229523864|ref|ZP_04413269.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis
           VL426]
 gi|229529131|ref|ZP_04418521.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)]
 gi|124113602|gb|EAY32422.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587]
 gi|148873936|gb|EDL72071.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39]
 gi|229332905|gb|EEN98391.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)]
 gi|229337445|gb|EEO02462.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis
           VL426]
 gi|229342672|gb|EEO07664.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80]
 gi|327484398|gb|AEA78805.1| Holliday junction DNA helicase RuvA [Vibrio cholerae LMA3894-4]
          Length = 204

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A + S P  A N    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|307326761|ref|ZP_07605953.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu
           4113]
 gi|306887524|gb|EFN18518.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu
           4113]
          Length = 206

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  +I+V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAAVAPDTAVIEVGGIGMALQCTPATLAGL-RVGQQARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDVLRLAVSTGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELK +    L S V           A   + P ++    +ALV LGY   +A  
Sbjct: 120 AQRLLLELKDRLGEPLGSAV---------PSARSAAAPGWSDQLHTALVGLGYATREADE 170

Query: 180 AVVSVLK--KEKNIADDSQIIRLALRA 204
           AV +V    +E   A     + L LRA
Sbjct: 171 AVAAVTPQAEEAVAAGGKPQVALLLRA 197


>gi|288930025|ref|ZP_06423866.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328684|gb|EFC67274.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 205

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  IKG++  L     +I+  GV Y +   + T + + GK  D   LFV     T  R 
Sbjct: 1   MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYTAIQGK--DKVKLFVHEALVTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF +  +R+ + LL SV GVGA  A  +LS ++  EL   I   + K++  + G
Sbjct: 59  DSYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPAELCNVIAAGDDKMLKTVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I  K A RI+ +LK K +  +S V Q++S      A + +  +    A+ AL  LG+   
Sbjct: 119 IGAKTAQRIIVDLKDKIV--TSGVAQELSVPTNANATVMNT-AVKDEAVGALTMLGFAPS 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +   VV +LK++  +  + Q+++ AL+ I
Sbjct: 176 ASAKVVVEILKEQPELPVE-QVVKAALKMI 204


>gi|88811437|ref|ZP_01126692.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis
           Nb-231]
 gi|88791326|gb|EAR22438.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis
           Nb-231]
          Length = 203

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 103/203 (50%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LIDVQGV Y +  P+ T   L   G+  TL     +++D   L
Sbjct: 1   MIGRLRGILLEKQPPRLLIDVQGVGYEVEAPMSTFYELPAQGEAITLRTHLAIKEDGHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R  F  L  V GVG ++A+  LS +   E +  +  +++  + ++PG+  K 
Sbjct: 61  YGFHTEQERALFRSLIRVSGVGPKMALAFLSGMRTEEFLWCVRQRDTAALIRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   LS++  Q  +      +           A+SAL+ LGY   +A   
Sbjct: 121 AERLIVEMQDR---LSALATQASTAAGASFSAAGGANEAFTEAMSALLALGYKTPEAQQL 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  + + E +     ++IRLALR
Sbjct: 178 LAGLAEAELS---SEELIRLALR 197


>gi|86131995|ref|ZP_01050591.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia
           donghaensis MED134]
 gi|85817329|gb|EAQ38509.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia
           donghaensis MED134]
          Length = 193

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 22/210 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V++D  GV Y I   + T   LG  G+   L+    +++D   L
Sbjct: 1   MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGQLGD-GEALKLYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+  ++R+ F LL SV G+GA  A  +LS +   ++ ++I   +   I  I GI  K 
Sbjct: 60  YGFMEVMEREIFRLLLSVSGIGASTARTMLSSLEPNQIKQAIASNDVATIQSIKGIGAKT 119

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           + R++ +LK K      IS  S VQ   S  NKE+            A+SAL  LG+ + 
Sbjct: 120 SQRVILDLKDKILKVYDISTESAVQ---SNTNKEE------------ALSALETLGFARK 164

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA    +++  KEK  A    II+ AL+ +
Sbjct: 165 QAEKVCLAI-TKEKPDASVETIIKEALKKL 193


>gi|261211909|ref|ZP_05926196.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341]
 gi|260839259|gb|EEX65891.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341]
          Length = 204

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A I S+P  A N    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSVPMMAQNAQEEAVSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  V K   +     ++IR AL+++
Sbjct: 178 ASKVVSQVAKAGMSC---EELIREALKSM 203


>gi|94501014|ref|ZP_01307538.1| Holliday junction DNA helicase motor protein [Oceanobacter sp.
           RED65]
 gi|94426761|gb|EAT11745.1| Holliday junction DNA helicase motor protein [Oceanobacter sp.
           RED65]
          Length = 203

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +LI+V G+ Y ++ P+ T+  L ++G   TL     +R+D   L
Sbjct: 1   MIGRISGTLLEKLPPELLIEVNGLGYEVHAPMTTIYALPEVGQGVTLHTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++A+ +LS I     V S+   +S  + +IPGI  K 
Sbjct: 61  YGFSDKQQRALFRALIKVSGVGPKLALAILSGIETDTFVRSVHDGDSATLVRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +       V  D+  +        S   +   A  AL+ LGY   + T A
Sbjct: 121 AERLIVEMKDRLKEWQ--VDSDLPLMAAANPAPASQDQWIQEAEGALIALGY---KPTEA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++   ++ +     +IRLAL+ +
Sbjct: 176 AKAIAAIKEPVNGSEDLIRLALKGM 200


>gi|308177527|ref|YP_003916933.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter
           arilaitensis Re117]
 gi|307744990|emb|CBT75962.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter
           arilaitensis Re117]
          Length = 205

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +IDV G   ++     TLS L   G   T+F    +R+D + L
Sbjct: 1   MISSLTGTVQAVALNTAVIDVNGFGMLVNATPGTLSAL-HAGREATVFTSMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F +L SV G+G R  + +L+  +  E+  +   +++    ++ GI  K 
Sbjct: 60  FGFATAEERDVFEVLISVSGIGPRTGLAILAVHSPEEVRIAANTKDTAAFTKVSGIGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL GK +   + V       N        +  +    I AL  LG+ +  AT  
Sbjct: 120 ASRIVLELNGKLVPTGAPVPSSSGGGN--------VSVWEPQVIEALTGLGWSEKDATAT 171

Query: 181 VVSVLKKEKNI---ADDSQIIRLALRAISC 207
           + S+ K + ++    + ++I+R ALR++S 
Sbjct: 172 LKSLSKADPDVIAAGNVAEILRAALRSMSS 201


>gi|291617754|ref|YP_003520496.1| RuvA [Pantoea ananatis LMG 20103]
 gi|291152784|gb|ADD77368.1| RuvA [Pantoea ananatis LMG 20103]
          Length = 204

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L  +     +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEAHGVGYEVHMPMTCFYELPDLNHEAVIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+K +   +      D+   +         P    N     A++ALV+LGY   
Sbjct: 121 AERLVVEMKDRFKGMHG----DLFGGDSAFTLTTPGPEPETNDAESEAVAALVSLGYKPQ 176

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A+  +  V + +   AD   +IR ALRA
Sbjct: 177 EASRMISKVGRPD---ADCETLIREALRA 202


>gi|23335124|ref|ZP_00120362.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Bifidobacterium longum DJO10A]
 gi|23465306|ref|NP_695909.1| holliday junction DNA helicase RuvA [Bifidobacterium longum
           NCC2705]
 gi|189439315|ref|YP_001954396.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium
           longum DJO10A]
 gi|227547258|ref|ZP_03977307.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239621474|ref|ZP_04664505.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|44888506|sp|Q8G6B8|RUVA_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560004|sp|B3DRX9|RUVA_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|23325944|gb|AAN24545.1| probable holliday junction DNA helicase RuvA [Bifidobacterium
           longum NCC2705]
 gi|189427750|gb|ACD97898.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium
           longum DJO10A]
 gi|227212217|gb|EEI80113.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239515935|gb|EEQ55802.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 208

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 105/210 (50%), Gaps = 17/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y +      LS L   G    +F   ++ QD I L
Sbjct: 1   MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRL-HAGQDTRVFTYMNLSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL    ++ F+ L  V G+G +VA  +LS +T ++L  +I   ++  +A+ PG+  K 
Sbjct: 60  HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178
           A +I+ ELKG +I LS +  +  S     QA     P  +     +  L++LG+ Q  A 
Sbjct: 120 AQKIILELKG-SIDLSQI--EGASA----QAATSKSPVDTGTEQVVEGLISLGWRQQDAQ 172

Query: 179 TAVVSVLKKEKNIA-----DD-SQIIRLAL 202
            AV      E +I      DD  +++RLAL
Sbjct: 173 QAVAEAC-AENDIPTPLATDDVPRVLRLAL 201


>gi|226942024|ref|YP_002797098.1| RuvA [Laribacter hongkongensis HLHK9]
 gi|254766965|sp|C1D5S2|RUVA_LARHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226716951|gb|ACO76089.1| RuvA [Laribacter hongkongensis HLHK9]
          Length = 202

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 22/214 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   +L+D  GV Y +  P+ T   L  + +   L+    +R+D   L
Sbjct: 1   MIGRLSGTLLEKHPPQILVDAGGVGYEVDVPMSTFCRLPGLNEPVVLWTHMAVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F  L  + GVG ++A+ +LS +   EL  ++  ++ K ++++PGI  K 
Sbjct: 61  FGFAGRAERELFRQLIRISGVGGKLALALLSSLEPDELARAVAQEDIKTLSRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSV--------VQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A R++ EL+GK  SL S             +   N E+A I            AL  LGY
Sbjct: 121 AERLILELRGKLGSLPSADLLSPAPAAGAALLVENDERADIS----------QALQALGY 170

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              +A  A+ SV     +  D +  IRLAL+A++
Sbjct: 171 SAREAEAALKSV----PDGTDVATGIRLALKALA 200


>gi|300112852|ref|YP_003759427.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113]
 gi|299538789|gb|ADJ27106.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113]
          Length = 202

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 5/182 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L+DVQGV Y +  P+ T   L  +G    L+    +R D   L
Sbjct: 1   MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F S+ +R  F  L  V GVGA++ +G+LS I A      +   ++  + ++PGI  K 
Sbjct: 61  YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A R++ E++ + +        +M C +       S+P+  +  A+SALV LGY  + A+ 
Sbjct: 121 AERLIIEMRDRLLDRPESRIAEM-CSDTVDG---SVPAGTVAEAVSALVALGYKPNDASR 176

Query: 180 AV 181
            V
Sbjct: 177 TV 178


>gi|158320755|ref|YP_001513262.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii
           OhILAs]
 gi|167012655|sp|A8MHI4|RUVA_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158140954|gb|ABW19266.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii
           OhILAs]
          Length = 194

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 10/184 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +  D ++++V G+ Y I+  I ++S + K GD  T++    +R+D++ L
Sbjct: 1   MFEYLKGTVADILIDKIIVEVNGIGYRIHSTIHSVSQIKK-GDAITVYTHLVVREDELSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +   F  L SV  +G +VA G+LS  T  +L   I+ ++   +++ PG+  K 
Sbjct: 60  YGFMSIEELDMFQKLISVSKIGPKVASGILSAYTPNKLSAYILSKDISALSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K +  ++VV  D +  N +             A+ AL+ LGY + ++  A
Sbjct: 120 AERIILELKDK-VDKTNVV-YDYTLFNDDHKDDD-------EAVQALMALGYSKLESEKA 170

Query: 181 VVSV 184
           V +V
Sbjct: 171 VEAV 174


>gi|52841519|ref|YP_095318.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81377601|sp|Q5ZW00|RUVA_LEGPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52628630|gb|AAU27371.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 199

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G I   ++   L+ DV GV Y +   + T   +        L + T +R+D + 
Sbjct: 1   MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPVGLHIHTIVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVG ++AM VLS I+  E ++ I  +N+ ++ ++PGI  K
Sbjct: 61  LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++       S+ Q D S  +  Q    S  S    AISAL  LGY   +A  
Sbjct: 121 TAERLVVEMR------DSIKQFDGSVSDTFQKQAGSTHS-QQEAISALEALGYKPQEAWK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            +  +    K+     Q+IR AL+ +S 
Sbjct: 174 VMNKIDNGNKSC---EQLIREALQILSS 198


>gi|318075775|ref|ZP_07983107.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actF]
          Length = 210

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 12/190 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V G+   + C   TLS L +IG+   +     +R+D + L
Sbjct: 1   MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+ ++   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ ELK   G+ +   ++  Q  +            P +     +ALV LGY   +A
Sbjct: 120 AQKLILELKDRLGQPLGTGTLGAQRRAAAGP--------PPWTEQLHTALVGLGYQPREA 171

Query: 178 TTAVVSVLKK 187
             AV +V  +
Sbjct: 172 EEAVEAVTPQ 181


>gi|256827686|ref|YP_003151645.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium
           curtum DSM 15641]
 gi|256583829|gb|ACU94963.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium
           curtum DSM 15641]
          Length = 194

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D +++DV GV + +    ++LS L  +G    +     +R+D + L
Sbjct: 1   MIASLKGTLVAREADGIVLDVGGVGFSVGMSTQSLSRLPSVGVTVQIHTYLQVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  ++  F  L SV G+G +VA+  LS  T   L  +I+  +   +++IPGI  K 
Sbjct: 61  FGFTSVKEKALFEKLLSVSGIGPKVALSALSSFTPDALTSAIMTNDVTGVSRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+G ++ ++      M+  +  Q H          A+  L+ LG+   +A  A
Sbjct: 121 AQRIILELQG-SLDVAEQTSDQMAVPSDTQLH--------HRALDDLLALGFSSTEAELA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
               LK     A ++ +++ AL+
Sbjct: 172 ----LKGAPKDATEASLVQYALK 190


>gi|89256283|ref|YP_513645.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314735|ref|YP_763458.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502349|ref|YP_001428414.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167011087|ref|ZP_02276018.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367618|ref|ZP_04983639.1| holliday junction DNA helicase subunit A [Francisella tularensis
           subsp. holarctica 257]
 gi|254369266|ref|ZP_04985278.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953118|ref|ZP_06557739.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313646|ref|ZP_06804230.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325244|sp|Q0BM63|RUVA_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123094517|sp|Q2A3Q7|RUVA_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230551|sp|A7NBV5|RUVA_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89144114|emb|CAJ79371.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129634|gb|ABI82821.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253429|gb|EBA52523.1| holliday junction DNA helicase subunit A [Francisella tularensis
           subsp. holarctica 257]
 gi|156252952|gb|ABU61458.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122216|gb|EDO66356.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 216

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +      A   ++IR AL+
Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209


>gi|304317016|ref|YP_003852161.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778518|gb|ADL69077.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 188

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 14/184 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     DYV+++  G+ + I  P  TL  L    D   L+   H+++D  + 
Sbjct: 1   MIDYIKGAIVERGIDYVVVETLGIGFKIIVPTSTLRELPNTNDIIKLYTYLHVKEDGFQF 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F  L +V GVG + A+ +LS I+      +I   +SK+I + PGI  K 
Sbjct: 61  YGFLTINEMEIFKKLIAVNGVGPKAAVSILSTISIDNFYNAIKNGDSKIIEKSPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K              +N  +A    +   + + ++AL++LGY + ++ +A
Sbjct: 121 AQRIILELKDKLF------------INNAEA--VKIDDASEDVLNALLSLGYTRQESISA 166

Query: 181 VVSV 184
           +  +
Sbjct: 167 LYGI 170


>gi|134302038|ref|YP_001122007.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166230553|sp|A4IY85|RUVA_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134049815|gb|ABO46886.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 216

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFIVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +      A   ++IR AL+
Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209


>gi|317121686|ref|YP_004101689.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis
           DSM 12885]
 gi|315591666|gb|ADU50962.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis
           DSM 12885]
          Length = 223

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 76/131 (58%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  D V IDV GV + +    +T   L   G+   L     +R+DQ  L
Sbjct: 1   MIAFLRGELVALAGDEVWIDVGGVGFRVAVSRQTQRRLPPAGEPVRLLTRLVVREDQWSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V GVG RVA+ VLS ++  EL  +++LQ+  ++ ++PG+  K+
Sbjct: 61  YGFATADEQAAFDALLTVSGVGPRVALAVLSVLSPEELRRAVVLQDPALLTRVPGVGPKL 120

Query: 121 ASRIMTELKGK 131
           A R++TEL+ +
Sbjct: 121 ARRLLTELRDR 131


>gi|123442635|ref|YP_001006612.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166231457|sp|A1JRJ9|RUVA_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122089596|emb|CAL12445.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 205

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  IG    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  +   +    ++   +    I   A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RLVSKIAKPG---ADCETLIRDALRA 203


>gi|110597586|ref|ZP_01385871.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM
           13031]
 gi|110340706|gb|EAT59183.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM
           13031]
          Length = 200

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  L  +  +++V G+ Y       T   L + G    L+    +R+D  +L
Sbjct: 1   MFAYFRGRLVSLLPEEAVVEVSGIAYRFLISASTSRQLPETGSEVLLYSHLSVREDAHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +RQ F LL    GVG ++A+ VLS +   E+ ++I+    + +  I G+  K 
Sbjct: 61  YGFITEAERQMFRLLILTSGVGPKLALAVLSGLQVAEVYDAILANTPERLYGITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + LS         +    A + S      +AI+ALV LG+ +     A
Sbjct: 121 AARIILELRDKILKLSPA-----GTIAAPSAQLSS--RMRDDAINALVTLGFSRVTVQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+L+K   ++ + ++I+ AL +I
Sbjct: 174 VDSILEKNSALSVE-EVIKSALVSI 197


>gi|318605500|emb|CBY26998.1| holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 205

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  IG    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  +   +    ++   +    I   A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RLVSKIAKPG---ADCEALIRDALRA 203


>gi|218281325|ref|ZP_03487813.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989]
 gi|218217510|gb|EEC91048.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989]
          Length = 192

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 16/178 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  D V++DV GV Y +Y     LS   K+ +   L+   H+R+D I L
Sbjct: 1   MIAFVNGIVKIIRNDRVVLDVHGVGYEVYLA-NALSQ--KMNEELFLYTYQHVREDAILL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+ + D + FM L +V+G+G + A  +LS  +  E++E+I   + K +  +PGI  K 
Sbjct: 58  FGFIKEEDYEVFMRLINVKGIGPKTAQTMLSVCSGKEMIEAIENDDIKRLKSLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +I+ +LKGK +SL +    D    N     +            AL++LGY  +Q T
Sbjct: 118 AGQIVLDLKGKFVSLET---SDSPVSNPVWTQVQ----------DALLSLGYKTNQLT 162


>gi|330445532|ref|ZP_08309184.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489723|dbj|GAA03681.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 207

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 11/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+ L++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120

Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E+K      G+    +  +  D +  N       +       A+SAL+ LGY  
Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPAL--DTAASNAPIQDPANQARAEDEAVSALIALGYKP 178

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A   V  V + E +      IIR ALR++
Sbjct: 179 QIAAKVVSQVTQPEMS---SEAIIRDALRSM 206


>gi|107021766|ref|YP_620093.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU
           1054]
 gi|116688712|ref|YP_834335.1| Holliday junction DNA helicase motor protein [Burkholderia
           cenocepacia HI2424]
 gi|161525864|ref|YP_001580876.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|170732009|ref|YP_001763956.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           MC0-3]
 gi|189349415|ref|YP_001945043.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|221202296|ref|ZP_03575330.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans
           CGD2M]
 gi|221209110|ref|ZP_03582104.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2]
 gi|221214501|ref|ZP_03587472.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1]
 gi|123371880|sp|Q1BZ35|RUVA_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230524|sp|A0K4L5|RUVA_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560009|sp|B1JVV4|RUVA_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560011|sp|A9AH72|RUVA_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|105891955|gb|ABF75120.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU
           1054]
 gi|116646801|gb|ABK07442.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           HI2424]
 gi|160343293|gb|ABX16379.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|169815251|gb|ACA89834.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           MC0-3]
 gi|189333437|dbj|BAG42507.1| holliday junction DNA helicase [Burkholderia multivorans ATCC
           17616]
 gi|221165758|gb|EED98233.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1]
 gi|221171014|gb|EEE03467.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2]
 gi|221177870|gb|EEE10283.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans
           CGD2M]
          Length = 193

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +    +    S  +            A + ++AL+ LGY + +   A
Sbjct: 121 AERLLLELKGKLGADLGALAGAASASD-----------HATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|146312076|ref|YP_001177150.1| Holliday junction DNA helicase RuvA [Enterobacter sp. 638]
 gi|167012660|sp|A4WBL9|RUVA_ENT38 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145318952|gb|ABP61099.1| Holliday junction DNA helicase subunit RuvA [Enterobacter sp. 638]
          Length = 203

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L   G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPDAGKEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAHQFVNAVEREDPAALIKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +     +  +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPNGPTSDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K +   A+   +IR ALRA
Sbjct: 181 VSKIAKPD---ANSETLIREALRA 201


>gi|322437324|ref|YP_004219536.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9]
 gi|321165051|gb|ADW70756.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9]
          Length = 196

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y +   + T S L + G    LF+ T + ++Q+ L
Sbjct: 1   MIAHLRGLLLFKSTNQAVVECGGVGYDVAISVATYSALPREGAEAKLFIFTKVAEEQLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  F  L ++ G+G ++A+ VLS I A  LV +I   +   + +IPGI  K 
Sbjct: 61  FGFSDRQEKSLFEKLLTITGIGPKLAITVLSGIAADRLVTAIRGGDHDTLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +++      + V   Q+H  +      + +SALVNLGY + QA  A
Sbjct: 121 AERVVLELKDKLDDMAT------APVAAVQSHGPA----GDDVLSALVNLGYARPQAQKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L+          + R A+  I
Sbjct: 171 IEMALRDPGAAGSFEVLFRAAMNHI 195


>gi|238751590|ref|ZP_04613080.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380]
 gi|238710152|gb|EEQ02380.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380]
          Length = 204

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  +   +     A   S       A SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASAAKTSDADIEAEAASALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 181 LVGKIAKPG---ADCETLIRDALRA 202


>gi|149191831|ref|ZP_01870068.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1]
 gi|148834349|gb|EDL51349.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1]
          Length = 205

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y I  P+     L +IG    ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVGGVGYEIQMPMSCFYELPEIGQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS ++AT+ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVRERALFREVIKANGVGPKLGLGILSGMSATQFVACVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+K +   L      D+     + A + S+ +   +     A+SAL+ LGY   
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPVDSVGAMNADNAEEEAVSALLALGYKPT 177

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+  V  V K +        +IR ALRA+
Sbjct: 178 QASKVVSQVAKPDMT---SEALIREALRAM 204


>gi|187931869|ref|YP_001891854.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229560033|sp|B2SH67|RUVA_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187712778|gb|ACD31075.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 216

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVIEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +      A   ++IR AL+
Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209


>gi|295094803|emb|CBK83894.1| Holliday junction DNA helicase subunit RuvA [Coprococcus sp.
           ART55/1]
          Length = 200

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E   ++Y++I+  G+ Y +    + +  L  +     +    ++R+D+I L
Sbjct: 1   MISYIRGALEIKGDNYIVIECGGIGYQLMVSGKFMEKLPPVHSEIKVSTYMYIREDEICL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F +L  V GVG +VAM +LS +T  EL  ++I ++ K I++  GI  K 
Sbjct: 61  FGFENADELNVFKILLGVSGVGPKVAMSLLSTLTVNELRLAVISEDVKAISKANGIGAKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K +S+  ++    +  N   A   +      N ISAL  LGY   +A  A
Sbjct: 121 ASRIILELKDK-LSMEDMID---AAYNDSVAVQNAAGDVRTNVISALTALGYSGVEAGRA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V        D+ Q+++ ALR
Sbjct: 177 VSRVDGSAD--MDEEQLLKAALR 197


>gi|254518551|ref|ZP_05130607.1| holliday junction DNA helicase motor protein [Clostridium sp.
           7_2_43FAA]
 gi|226912300|gb|EEH97501.1| holliday junction DNA helicase motor protein [Clostridium sp.
           7_2_43FAA]
          Length = 201

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 7/159 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           I+G  +G+  DY++I+  G+ Y I+    T+S + KI +   L++E  +R+D + L+GF 
Sbjct: 5   IRGKYKGINRDYIIIENNGIGYKIFTSGATMSSMPKIDEEVKLYLEQIVREDFLGLYGFD 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  + + F LL S+ GVGA+ A+ +LS      L  +I++ + K + + PGI  K A RI
Sbjct: 65  AREELEMFKLLLSINGVGAKAALSLLSISRINNLRYAIMMGDEKHLCKAPGIGKKTAGRI 124

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAIN 162
           + ELK K      + ++D+S V +        MP+ A N
Sbjct: 125 ILELKDK------IKKEDISEVIEGSGEFEDLMPNNASN 157


>gi|323142288|ref|ZP_08077120.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT
           12067]
 gi|322413172|gb|EFY04059.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT
           12067]
          Length = 200

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQG-VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG +KG ++ L  D  +I+  G V Y ++ P   L+ L + G    L + T +R+D I 
Sbjct: 1   MIGSLKGTVDSLGIDNCIIETAGGVGYRVFMPAAQLAQLTQ-GASVRLHIHTAVREDAIV 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFLS      F LL ++ GVG ++A+G+LS +       ++  ++ KV+ ++PGI  K
Sbjct: 60  LYGFLSREYYDLFELLLTISGVGPKMALGILSAVKPDAFYLAVQSRDIKVLTKLPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQAT 178
            A R++ ELK K   +  V  +      +    + +  S A+  AI AL +LGY   +  
Sbjct: 120 TAERLLLELKDK---VGPVAAESADSFGE---AVAAGGSGAVAEAIEALASLGYSNSEIM 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
             +  +   E   ++  +I++ ALR
Sbjct: 174 PVIKKIEGAETKTSE--EILKQALR 196


>gi|295095544|emb|CBK84634.1| Holliday junction DNA helicase subunit RuvA [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 231

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G I       VL++V GV Y ++ P+     L + G    +F +  +R+D   L
Sbjct: 28  VIGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGKEAVVFTQFVVREDAQLL 87

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 88  YGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKT 147

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L   +       V        S       A++ALV LGY   +A+ 
Sbjct: 148 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPASDDDAEQEAVAALVALGYKPQEASR 207

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K +   A    +IR ALRA
Sbjct: 208 MVSKIAKPD---ASSETLIREALRA 229


>gi|297579365|ref|ZP_06941293.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385]
 gi|297536959|gb|EFH75792.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385]
          Length = 204

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A + S P  A N    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGVGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|268589737|ref|ZP_06123958.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131]
 gi|291314889|gb|EFE55342.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131]
          Length = 205

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--QAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N     + + +M      A +AL+ LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPSVNSKVPNMADIEAEAAAALIALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K +   +D   +IR ALRA
Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203


>gi|157161330|ref|YP_001458648.1| Holliday junction DNA helicase RuvA [Escherichia coli HS]
 gi|170019794|ref|YP_001724748.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739]
 gi|188494515|ref|ZP_03001785.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638]
 gi|193069860|ref|ZP_03050809.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019]
 gi|167012659|sp|A8A161|RUVA_ECOHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045753|sp|B1J0M7|RUVA_ECOLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157067010|gb|ABV06265.1| Holliday junction DNA helicase RuvA [Escherichia coli HS]
 gi|169754722|gb|ACA77421.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739]
 gi|188489714|gb|EDU64817.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638]
 gi|192956760|gb|EDV87214.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019]
 gi|309702085|emb|CBJ01399.1| holliday junction ATP-dependent DNA helicase [Escherichia coli ETEC
           H10407]
 gi|323937119|gb|EGB33399.1| Holliday junction DNA helicase RuvA [Escherichia coli E1520]
          Length = 203

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 13/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+K +   L      D+     +   + S  S A N     A++ALV LGY   
Sbjct: 121 AERLIVEMKDRFKGLHG----DLFTPAADLV-LTSPASPATNDAEQEAVAALVALGYKPQ 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A+  V  + + +   A    +IR ALRA
Sbjct: 176 EASRMVSKIARPD---ASSETLIREALRA 201


>gi|292488538|ref|YP_003531422.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           amylovora CFBP1430]
 gi|292899714|ref|YP_003539083.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199562|emb|CBJ46679.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553969|emb|CBA21014.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           amylovora CFBP1430]
 gi|312172681|emb|CBX80937.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           amylovora ATCC BAA-2158]
          Length = 204

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y +  P+     L  I     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPDIRQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++       + ++PG+  K 
Sbjct: 61  FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+K +   +      D+   +   A    MP    N     A++AL  LGY   
Sbjct: 121 AERLVVEMKDRFKGMHG----DLFASDAPFALTSEMPKETGNDAESEAVAALTALGYKPQ 176

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A+  +  + K +   AD   +IR ALRA
Sbjct: 177 EASRMIGKIGKPD---ADCETLIREALRA 202


>gi|194017234|ref|ZP_03055846.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061]
 gi|194011102|gb|EDW20672.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061]
          Length = 201

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   YV+I+  GV Y +Y P      + +I    T++   ++++D   L
Sbjct: 1   MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPN---PFIYQINKHETIYTYHYIKEDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+      ++ +I  ++   + + PG+  K 
Sbjct: 58  YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAIN-AISALVNLGYGQDQAT 178
           A +I+ +LKGK   L+ VV + +  +   + HI       A++ A  AL  LGYG D+  
Sbjct: 118 ARQIILDLKGK---LADVVPEMIGNLFNHEDHIQVETQQTALDEAFEALSVLGYG-DREI 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V+ +LK+EKN+  D Q ++ AL+ +
Sbjct: 174 KKVLPLLKEEKNLTTD-QYVKKALQKM 199


>gi|327314021|ref|YP_004329458.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289]
 gi|326944672|gb|AEA20557.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289]
          Length = 205

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 112/217 (51%), Gaps = 25/217 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  I+G +  L     +++ QGV Y +   + T S + G+      L+V     T  R 
Sbjct: 1   MIEYIRGELADLTPALAVVEAQGVGYALNISLNTYSAIQGRTP--VKLYVHEAIMTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF S  +R  + LL +V GVGA +A  +LS +T  EL   I   + K++  + G
Sbjct: 59  DSYTLYGFASRQERSLYRLLITVSGVGANIARMILSSLTPAELCNVIANGDEKMLKTVRG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168
           I ++ A RI+ +LK K      ++Q  ++    ++ H+ S P + A+N      A+SAL 
Sbjct: 119 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPGTPAVNTAIKDEAVSALT 168

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            LG+    +   VVS+L  + ++  + Q+++LAL+ I
Sbjct: 169 MLGFSPAPSAKVVVSILTDQPDLPVE-QVVKLALKMI 204


>gi|254292161|ref|ZP_04962932.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226]
 gi|150421924|gb|EDN13900.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226]
          Length = 204

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A + S P  A N    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAADLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ A+  V K   +     ++IR AL+++
Sbjct: 178 ASKALSQVAKAGMS---SEELIREALKSM 203


>gi|325661158|ref|ZP_08149785.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472665|gb|EGC75876.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 200

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 106/188 (56%), Gaps = 13/188 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  + E+ V+++VQG+ Y I+ P + ++ L  IG    +    ++R+D ++L
Sbjct: 1   MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F LL  V G+G +  + +LS++T  +L  +++  + K I+  PGI  K 
Sbjct: 61  FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A +++ ELK K +++  V+ +        +  + S+PS   +    A+ ALV LGYG  +
Sbjct: 121 AEKLIIELKDK-LNIDDVLTK--------EEEVMSVPSGGADMQSEAVQALVALGYGSAE 171

Query: 177 ATTAVVSV 184
           +  AV  V
Sbjct: 172 SLKAVKKV 179


>gi|302345821|ref|YP_003814174.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC
           25845]
 gi|302149753|gb|ADK96015.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC
           25845]
          Length = 205

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 25/217 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  I+G +  L     +++  GV Y +   + T S + GK      L+V     T  R 
Sbjct: 1   MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAIQGKTA--VKLYVHEAIMTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + G
Sbjct: 59  DNYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168
           I ++ A RI+ +LK K      ++Q  ++    ++ H+ S P + A+N      A+SAL 
Sbjct: 119 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPNTPAVNAAIKDEAVSALT 168

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            LG+    +   VVS+L ++ ++  + Q+++LAL+ I
Sbjct: 169 MLGFSPAPSAKVVVSILTEQPDLPVE-QVVKLALKMI 204


>gi|331085084|ref|ZP_08334171.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408784|gb|EGG88249.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 200

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 106/188 (56%), Gaps = 13/188 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  + E+ V+++VQG+ Y I+ P + ++ L  IG    +    ++R+D ++L
Sbjct: 1   MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F LL  V G+G +  + +LS++T  +L  +++  + K I+  PGI  K 
Sbjct: 61  FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A +++ ELK K +++  V+ +        +  + S+PS   +    A+ ALV LGYG  +
Sbjct: 121 AEKLIIELKDK-LNIDDVLTK--------EEEVMSVPSGGADMQSEAVQALVALGYGSAE 171

Query: 177 ATTAVVSV 184
           +  AV  V
Sbjct: 172 SLKAVKKV 179


>gi|304413290|ref|ZP_07394763.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
 gi|304284133|gb|EFL92526.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
          Length = 202

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y I  PI     L + G    +F +  +R++   L
Sbjct: 1   MIGRLRGIILEKQPPQVLLETHGVGYEIQLPISCFYQLPEAGQEAIIFTQFVVREEAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAPQFVHAVEQEEISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L+  +  + S      A + +  +    A+SAL+ LGY   +A+  
Sbjct: 121 AERLVVEMKDRIKGLNGDLFTN-STAAPLSASLLTTVNNEAEAVSALITLGYKPQEASRL 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +   E    D   +IR ALRA
Sbjct: 180 INKIATAE---MDCETLIREALRA 200


>gi|256823080|ref|YP_003147043.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069]
 gi|256796619|gb|ACV27275.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069]
          Length = 205

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 8/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG+I+G +      +V+I+   GV Y I  P+ T   L + G+   L     + ++   
Sbjct: 1   MIGRIRGTLIEKIPPFVIIETTAGVGYEIQVPMTTFYQLPEEGEQAILSTHMSIAENLHA 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+S  DR  F  L  V GVG ++A+ +LS +   E V ++   N   + ++PG+  K
Sbjct: 61  LYGFISTKDRALFRELIKVNGVGPKLALAILSGMETDEFVMTVHDGNVDRLVKLPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQA 177
            A R++ E+  +    S  +   +      +A I   +    +  A+SAL+ LGY    A
Sbjct: 121 TAERLLVEMSDRLKDWS--ISAGLPSSQPSEASIAQTAKTDASQEAVSALIALGYKPQIA 178

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           + AV  V   +   A   ++IRLALR ++ 
Sbjct: 179 SKAVTQVAHDD---AKSEELIRLALRQLAS 205


>gi|46912737|emb|CAG19527.1| Putative holliday junction DNA helicase RuvA [Photobacterium
           profundum SS9]
          Length = 228

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 14/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD---FCTLFVETHMRQDQ 57
           +IG++ G I       VLIDV G+ Y +  P+     L ++G     CT F+   +R+D 
Sbjct: 23  VIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFI---VREDA 79

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF    +R+ F  +    GVG ++ + +LS +TA++ V S+  ++   + +IPG+ 
Sbjct: 80  QLLYGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVG 139

Query: 118 MKIASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            K A R++ E    LKG           D +  N E     S  +    A+SAL+ LGY 
Sbjct: 140 KKTAERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARA-EDEAVSALIALGYK 198

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             QA   V  V+K E +      IIR ALR++
Sbjct: 199 ALQAAKVVSQVVKPEMS---SENIIREALRSM 227


>gi|297616928|ref|YP_003702087.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144765|gb|ADI01522.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 201

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 10/172 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D V +DV GV + +  P R L+ +  IG    L+      +++ R+
Sbjct: 1   MIAFLRGILVDTGTDCVYLDVNGVGFEVTVPPRVLNRVTCIGQEVFLYTYLQTLENEFRI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +RQ F  L S+ G+GA+  +G++S +T  EL  +++ Q+ K +  +PGI  K 
Sbjct: 61  YGFLDEDERQLFRTLLSIPGLGAKTCLGIVSSMTTEELYRAVLAQDEKSLTSVPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A R++ EL+ K        + D+      +    ++ S   + ISAL  LG+
Sbjct: 121 AQRLIFELQNKW------PKTDLIATTASE----NLRSSWTDTISALETLGF 162


>gi|317131997|ref|YP_004091311.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense
           YUAN-3]
 gi|315469976|gb|ADU26580.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense
           YUAN-3]
          Length = 199

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 98/216 (45%), Gaps = 35/216 (16%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +        +I   GV +       TL  L   G+   L+   ++R+D + L
Sbjct: 1   MIYSLKGTLTHTGPGMAVISCGGVGFKCLTTANTLGALPPPGEEAFLYTHLNVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F +L  V GVG + A+ +LS  T  +   S+   ++K + + PGI  KI
Sbjct: 61  YGFGSEEELHCFRMLIGVSGVGPKAALSILSGTTPAQFAFSVASGDAKALTRAPGIGSKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-----CSMPSF----AINAISALVNLG 171
           A RI+ ELK K              +N EQA         +P+     A  A+SALV LG
Sbjct: 121 AQRIVLELKDK--------------INGEQAAANFTGGTPVPAVSGGSAAEAVSALVVLG 166

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQ----IIRLALR 203
           Y   +A  AV        N  D +Q    IIR ALR
Sbjct: 167 YSGTEAQGAV--------NRCDPAQSVEDIIRQALR 194


>gi|295099824|emb|CBK88913.1| Holliday junction DNA helicase subunit RuvA [Eubacterium
           cylindroides T2-87]
          Length = 193

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D V++DV GV Y ++    + +   KIGD   L+   H+R+D + L
Sbjct: 1   MIAFVSGIVRLIRTDSVVLDVHGVGYEVFI---SNALTQKIGDELFLYTYQHVREDAMLL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   D + FM L +V+G+G + A  +L+    ++++++I   + K++  +PGI  K 
Sbjct: 58  YGFIKQEDYEVFMRLINVKGIGPKTAQTMLAVCPGSKMIQAIEEDDVKLLKSLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +S+ +  +   + V KE                ALV LGY  +Q    
Sbjct: 118 ASQIVLDLKGKFVSVETKEETISNPVWKETQE-------------ALVALGYKVNQ---- 160

Query: 181 VVSVLKKE---KNIADDSQIIRLAL 202
            +S ++KE   K   + ++++R+AL
Sbjct: 161 -LSGVRKELANKTDLNVNEMLRMAL 184


>gi|313239182|emb|CBY14141.1| unnamed protein product [Oikopleura dioica]
          Length = 202

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V+++V GV Y +  P+ +   L  IG    L     +R+D   L
Sbjct: 1   MITFLHGRLVDALPTQVVVEVHGVGYEVLIPLSSFDRLPGIGQEIHLLTHLTVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF++  +R+ F LL  +V G+G R+A+ VLS +  T    ++   + + ++QI G+  K
Sbjct: 61  YGFVTGAERELFRLLVHTVTGIGPRIALNVLSGMPPTAFRSAVATGDIRALSQISGVGRK 120

Query: 120 IASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            A RI+ ELK   G A +L +      +   ++  H         +A+ ALV LG+ Q +
Sbjct: 121 TAERIIVELKDKVGSAAALETTGPGRTAGPTEKAVH---------DAVLALVALGFKQPE 171

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           A   V +        A   Q++R  L+
Sbjct: 172 AFETVRAAQAALGPQATVEQLVRAGLK 198


>gi|170769415|ref|ZP_02903868.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627]
 gi|170121739|gb|EDS90670.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627]
          Length = 203

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPATDLVLTSPASPATEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|325105978|ref|YP_004275632.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM
           12145]
 gi|324974826|gb|ADY53810.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM
           12145]
          Length = 194

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 102/194 (52%), Gaps = 19/194 (9%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           Y++++  G+ Y I   + T S + K  + C L+   H+++D   ++GF  + +R+ F+ L
Sbjct: 16  YIVLEATGIGYHINISLNTFSLV-KDQEKCKLYTWLHVKEDGHTMYGFADEGERRLFLHL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV GVG   A  +LS I+  E+ ++II     +I  I GI  K A R++ +L+ K    
Sbjct: 75  ISVNGVGPNTARMMLSSISPIEIEQAIIKGEVGLIKSIKGIGPKTAQRLIIDLQDKLQKS 134

Query: 136 SS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
                  ++QD +   +E+            AISALV LG+ ++ A  AV S +KK   I
Sbjct: 135 GDGTLIAIRQDYTA--REE------------AISALVMLGFAKNNAEKAVDSAVKKSDKI 180

Query: 192 ADDSQIIRLALRAI 205
               +II++AL+++
Sbjct: 181 LSVEEIIKIALKSL 194


>gi|332534227|ref|ZP_08410072.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036307|gb|EGI72778.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 205

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 10/194 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L KIG+   ++    +R+D   L
Sbjct: 1   MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKIGENAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++R  F  L    GVG ++ + +LS ++A + V  +  ++S  + ++PG+  K 
Sbjct: 61  FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAKQFVSCVNNEDSTSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------NAISALVNLGYGQ 174
           A R++ E+K +     +    D+     + A I  M    I      +A+SAL+ LGY  
Sbjct: 121 AERLVLEMKDRLKDWGN----DLFTPFSDSAVIEPMSDATIANNAADDAVSALLALGYKL 176

Query: 175 DQATTAVVSVLKKE 188
            QA  AV S+ K +
Sbjct: 177 PQAQKAVKSISKPD 190


>gi|260768875|ref|ZP_05877809.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972]
 gi|260616905|gb|EEX42090.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972]
          Length = 205

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IGD   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-----AINAISALVNLGYGQD 175
           A R++ E+K +   L      D+     + A + +M +         A+SAL+ LGY   
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPLDAMGAIHDQNAEEEAVSALLALGYKPA 177

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+ AV  V + +       Q+IR AL+++
Sbjct: 178 QASKAVSQVAQPDMT---SEQLIREALKSM 204


>gi|256832601|ref|YP_003161328.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM
           20603]
 gi|256686132|gb|ACV09025.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM
           20603]
          Length = 205

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 9/181 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G ++ +  D  ++ V GV Y++Y    TL+ L + G   TL+    +R+D + L
Sbjct: 1   MIAQLTGIVQKIRLDSAILTVHGVGYLVYATPATLATL-REGQDATLWTSLVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  +Q+V GVG R+A+ +L+   A  L  +++  + K + ++PGI  K+
Sbjct: 60  FGFTDFDERDVFETVQTVSGVGPRLALAMLAIHPAQALRTAVVHADIKALTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  +     S   Q  +   +  A        +   I AL++LG+   QA  A
Sbjct: 120 AQRIVLELSNRMTPPQSETTQTPTTPTEHDA--------SEQVIDALMSLGWNTKQAENA 171

Query: 181 V 181
           V
Sbjct: 172 V 172


>gi|332298112|ref|YP_004440034.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           brennaborense DSM 12168]
 gi|332181215|gb|AEE16903.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           brennaborense DSM 12168]
          Length = 205

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 12/176 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I       + ++  G+ + I  P  TL  L  +G+   ++   + R+D ++L
Sbjct: 1   MFNSLYGTITAKLPQTIYLETDGIEWDIAVPDTTLDTLPPVGERARVYTWLYHREDAVKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F+ L  V GVGA+ A+ ++S I   +LVE++  ++   + ++PG+  K 
Sbjct: 61  FGFATAADRLLFLDLLKVDGVGAKGALKIMSGIAPRQLVEALDSEDLSQLERLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQ 174
           A ++M  LKGK ++LS+         +  +  +   PS A   + I+AL ++GY +
Sbjct: 121 AQKMMLTLKGK-LALSA---------DSGRGSVQRSPSAAKWQDVITALADMGYDK 166


>gi|255291934|dbj|BAH90422.1| Holliday junction DNA helicase RuvA [uncultured bacterium]
          Length = 190

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 31/213 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +       V+ID  GV Y +  P+ +   L  +G   TL     +R+D   L
Sbjct: 1   MIGHLRGQLAARNPPEVVIDCGGVGYEVLVPMSSFYNLPALGQEVTLLTHLVVREDAQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V GVG R A+ +LS ++A EL +++  Q S  + ++PGI  K 
Sbjct: 61  YGFGSAAERATFRELIKVSGVGPRTALALLSGMSAAELAQAVSAQESGRLTKVPGIGKKT 120

Query: 121 ASRIMTELK-------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++ ELK       G   + +S  Q D+                    + AL+ LGY 
Sbjct: 121 AERLLLELKGKLGADLGPQAAPASDAQGDI--------------------LQALLALGY- 159

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            D+   A +  L ++  +   S+ I+LAL+A++
Sbjct: 160 NDREAAAALKALPQDVGV---SEGIKLALKALA 189


>gi|194433948|ref|ZP_03066220.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012]
 gi|194417820|gb|EDX33917.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012]
 gi|332095232|gb|EGJ00259.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 155-74]
          Length = 203

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYVLPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|71275803|ref|ZP_00652087.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon]
 gi|71900402|ref|ZP_00682535.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1]
 gi|170730217|ref|YP_001775650.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M12]
 gi|229560142|sp|B0U2E1|RUVA_XYLFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71163381|gb|EAO13099.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon]
 gi|71729834|gb|EAO31932.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1]
 gi|167965010|gb|ACA12020.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           M12]
          Length = 194

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L  +G    LF     + D   L
Sbjct: 1   MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R+ F  LQ V G+G ++A+ VLS ++       I   +   +  IPGI  K 
Sbjct: 61  YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   ++     +S   K      S       A  AL  LGY   +A   
Sbjct: 121 AERMLVELRDRAADFNN----GISTSGKLNLDTVS------EAALALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
                 +  ++A    +I+ AL+A  C
Sbjct: 171 ARDAGTESDDVA---TVIKKALQAALC 194


>gi|262394694|ref|YP_003286548.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25]
 gi|262338288|gb|ACY52083.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25]
          Length = 203

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 25/216 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TAT+ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           A R++ E+K +             + ++      +  N E+            AISAL+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEE-----------EAISALLA 169

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           LGY   QA+  V  + K + +     Q+IR AL+++
Sbjct: 170 LGYKPTQASKVVSQIAKPDMS---SEQMIREALKSM 202


>gi|254482531|ref|ZP_05095770.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2148]
 gi|214037222|gb|EEB77890.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2148]
          Length = 204

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+GN+       +L++V GV Y +  P+ TL  L ++G   +L     +R+D   L
Sbjct: 1   MIGRIRGNLVHKQPPVILVEVGGVGYELQVPMTTLFQLPELGAEVSLVTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + DR  F  L  V GVG ++A+ +LS + +      +   +   +  +PG+  K 
Sbjct: 61  YGFAQERDRALFRQLIKVSGVGPKLALTILSGMDSASFARCVQRDDISSLVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K      + Q D    +   A   +      +A  AL+ LGY   +A   
Sbjct: 121 AERLLVEMRDKLKDW--LGQLDGELPSSGPAQSAAPVDRVADAEGALIALGYKPAEAARM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V   + +I +   +IR AL+++
Sbjct: 179 VAAV--NDDSIENSEDLIRRALKSM 201


>gi|311279238|ref|YP_003941469.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1]
 gi|308748433|gb|ADO48185.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1]
          Length = 203

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L   G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPDQGKEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  FGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAAQFVNAVEREDPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAADDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  + + + N      +IR ALRA
Sbjct: 181 ISKIARPDAN---SETLIREALRA 201


>gi|329938965|ref|ZP_08288339.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus
           M045]
 gi|329301850|gb|EGG45743.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus
           M045]
          Length = 201

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 20/212 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDTAVLEVGGVGMAVQCTPNTLSTL-RLGRPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADEDERQVFELLQTASGVGPRLAQAMLAVHSPDALRRAVSTGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ ELK   G+ +  +  V        ++Q H            +AL+ LGY   +A
Sbjct: 120 AQKLLLELKDRLGEPLG-APAVGAPAGQGWRDQLH------------AALIGLGYATREA 166

Query: 178 TTAVVSVLKKEKNIADDSQI---IRLALRAIS 206
             AV +V  + +      Q+   +R AL+ ++
Sbjct: 167 DEAVAAVTPQAEAAEGTPQVGPLLRAALQTLN 198


>gi|294651065|ref|ZP_06728403.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvA [Acinetobacter haemolyticus ATCC 19194]
 gi|292823044|gb|EFF81909.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvA [Acinetobacter haemolyticus ATCC 19194]
          Length = 201

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCIIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   L+ +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A R+M EL+ +     ++     S  N   A I  M +  +  A +AL +LGY   +A  
Sbjct: 120 AERLMIELRDR---FKALAHSTGSTTNAAAAQIQFMTNSPVAEAEAALQSLGYKPAEAQK 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV +V       AD   IIR AL+++
Sbjct: 177 AVAAVKADYTESAD---IIRAALKSM 199


>gi|117928551|ref|YP_873102.1| Holliday junction DNA helicase subunit RuvA [Acidothermus
           cellulolyticus 11B]
 gi|166229623|sp|A0LUK6|RUVA_ACIC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117649014|gb|ABK53116.1| Holliday junction DNA helicase subunit RuvA [Acidothermus
           cellulolyticus 11B]
          Length = 196

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC--LGKIGDFCTLFVETHMRQDQI 58
           MI  + G +  +  D V+++V G    +     T++   +G+   F T  V   +R+D +
Sbjct: 1   MISFVSGRVAAVTPDSVIVEVGGFGVQLLATPATIARARVGERARFATSLV---VREDSL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF  D +R  F LLQ+  GVG R+A+ +L   + T L  ++  ++ K +A +PGI  
Sbjct: 58  TLYGFADDDERTVFELLQTASGVGPRLALAMLGVHSPTALRAAVATEDVKALALVPGIGR 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A RI+ ELK +  + S+   +  S   ++  H            + L+NLGY   QA 
Sbjct: 118 KTAQRIILELKDRLGTPSTAAAESTSGW-RDAVH------------AGLLNLGYTARQAD 164

Query: 179 TAVVSVLKKEKNIA--DDSQIIRLAL 202
            A+ ++  +  + A  D +  +RLAL
Sbjct: 165 EAIAAIAGELDDSAAVDTATALRLAL 190


>gi|323698439|ref|ZP_08110351.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. ND132]
 gi|323458371|gb|EGB14236.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           ND132]
          Length = 206

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G +    E   VL+   GV Y +  P   L+ L   G    LFV T + +  I 
Sbjct: 1   MIGYLLGELLSADEKGLVLLTPGGVGYEVAAPTSVLAKLPGRGQEVRLFVHTQVGEKAID 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL+  D   F  L S+  +G + AM +LS   A  L E    ++   ++ +PGI  K
Sbjct: 61  LFGFLTADDLDLFRTLISLDKLGPKKAMAILSMFDAAHLREIAFREDVNTLSTVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LK K   L  V  +  +     Q          ++A++ L  LGYG+D+   
Sbjct: 121 SAKQILWNLKDKVDKLKPVTGRGSAADQGRQGPQGEY----LDALAGLKGLGYGEDEIRP 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            ++    +E ++ D +  IR  L+ I+ 
Sbjct: 177 MLIETFDEEPDL-DAAGAIRAVLKKINA 203


>gi|198277641|ref|ZP_03210172.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135]
 gi|198269338|gb|EDY93608.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135]
          Length = 198

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 9/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG +      +V+++  G+ Y I   + T S + GK      L++   +R+D   
Sbjct: 1   MIEYIKGELVDATPAWVVVECNGLGYGINVSLNTYSAVQGK--KEVKLYIYEAIREDAYV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K
Sbjct: 59  LYGFATRQERELFLLLISVSGIGGNTARMILSALSPSELCNVIGSGNDKLLKTVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K I+++ +     S    +   + +       A++AL  LG+ Q  +  
Sbjct: 119 TAQRIIVELKDK-IAVTGI----ESAATVKSVAVAANTEIYEEAVAALTMLGFAQAPSQK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
               +LK+E + A   ++I+LAL+
Sbjct: 174 VTAQILKEEPD-APVEKVIKLALK 196


>gi|294786921|ref|ZP_06752175.1| holliday junction DNA helicase RuvA [Parascardovia denticolens
           F0305]
 gi|315226557|ref|ZP_07868345.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia
           denticolens DSM 10105]
 gi|294485754|gb|EFG33388.1| holliday junction DNA helicase RuvA [Parascardovia denticolens
           F0305]
 gi|315120689|gb|EFT83821.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia
           denticolens DSM 10105]
          Length = 207

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 7/187 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G++  +  D +L+DV G+ + +  P R L+ L   G    L V T + QD I L
Sbjct: 1   MIGSLEGDVLSVSADGLLLDVNGIGFSLRMPARDLAGLHAGGHERILTVMT-VSQDAIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS   +  F  LQ V GVG + AM +LS ++  EL ++I   +   + + PG+  K 
Sbjct: 60  YGFLSASSKTLFTQLQKVSGVGPKAAMAILSTLSPEELGKAIHDNDVTALTRAPGVGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G ++  SS+ +   S V +       + S     I  L +LG+ +  A  A
Sbjct: 120 AQKIILELHG-SVDFSSLDEAPASRVEE-----GGLDSSVDQVIQGLSSLGWQRRDAYQA 173

Query: 181 VVSVLKK 187
            +  L +
Sbjct: 174 TMEALGQ 180


>gi|119472454|ref|ZP_01614553.1| Holliday junction DNA helicase motor protein [Alteromonadales
           bacterium TW-7]
 gi|119444891|gb|EAW26190.1| Holliday junction DNA helicase motor protein [Alteromonadales
           bacterium TW-7]
          Length = 205

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 18/198 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L K+G+   ++    +R+D   L
Sbjct: 1   MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGENTIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L    GVG ++ + +LS ++A + V  +  +++  + ++PG+  K 
Sbjct: 61  FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGK----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
           A R++ E+K +            S S+V++     +    A        A +A+SALV L
Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPHSDALVANNA--------ADDAVSALVAL 172

Query: 171 GYGQDQATTAVVSVLKKE 188
           GY   QA  AV SV K +
Sbjct: 173 GYKLPQAQKAVKSVSKPD 190


>gi|108807436|ref|YP_651352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Antiqua]
 gi|108811697|ref|YP_647464.1| Holliday junction DNA helicase RuvA [Yersinia pestis Nepal516]
 gi|145598360|ref|YP_001162436.1| Holliday junction DNA helicase RuvA [Yersinia pestis Pestoides F]
 gi|21959100|gb|AAM85813.1|AE013828_4 Holliday junction helicase subunit B [Yersinia pestis KIM 10]
 gi|45436564|gb|AAS62118.1| Holliday junction helicase subunit B [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589648|emb|CAH21278.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775345|gb|ABG17864.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Nepal516]
 gi|108779349|gb|ABG13407.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Antiqua]
 gi|145210056|gb|ABP39463.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Pestoides F]
          Length = 226

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G I       VL++  GV Y +  P+     L ++G    +F +  +R+D   L
Sbjct: 23  VIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 82

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 83  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKT 142

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  +   ++   A    S       A SALV LGY   +A+ 
Sbjct: 143 AERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASR 202

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 203 LVSKIAKPG---ADCETLIRDALRA 224


>gi|298373760|ref|ZP_06983749.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274812|gb|EFI16364.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 193

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 14/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L   + +++V  + Y +   + T S L GK  D   ++V   +R+D   
Sbjct: 1   MIDYIKGKIVELSPAHAVVEVSDIGYHVNISLATYSELNGK--DNAKIYVYEAIREDSHT 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    +RQ F+LL SV GVGA  A  +LS I   +L  +I   N+ ++  + GI  K
Sbjct: 59  LFGFFGRQERQLFLLLISVSGVGANTARVILSSIAIDDLQSAIQTGNAAILKSVKGIGSK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LK K      V + ++S V+K           A  A++ALV LG+ Q  A  
Sbjct: 119 TAERIIVDLKDK------VSKIEISTVDKPVVDNV----LADEAVAALVMLGFSQMPAQK 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  V++    +  + Q+I+ +L+
Sbjct: 169 AVRKVIEINPQLTIE-QVIKQSLK 191


>gi|15838502|ref|NP_299190.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa 9a5c]
 gi|20455272|sp|Q9PC77|RUVA_XYLFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|9106999|gb|AAF84710.1|AE004010_7 holliday junction binding protein, DNA helicase [Xylella fastidiosa
           9a5c]
          Length = 194

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 73/137 (53%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L  +G    LF     + D   L
Sbjct: 1   MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFYELPNVGYEVNLFTHYTQKDDSAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R+ F  LQ V G+G ++A+ VLS ++       I   +   +  IPGI  K 
Sbjct: 61  YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ EL+ +A   ++
Sbjct: 121 AERMLVELRDRAADFNN 137


>gi|328950866|ref|YP_004368201.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451190|gb|AEB12091.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus
           hydrothermalis DSM 14884]
          Length = 201

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 13/199 (6%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           ++G +    ED  +I   G+ + ++CP  TL  L + G+   L     +R+D   L+GF 
Sbjct: 13  LQGRLVDKREDRAVILTGGIGFEVWCPTPTLETL-REGEEVALHTRLVVREDGFTLYGFH 71

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             +  + F LL SV GVG RVA+G+L+ +  + L  ++   ++K +   PG+  ++A RI
Sbjct: 72  DPVYLELFDLLTSVSGVGPRVALGMLAALPPSLLGRAVAEGDAKALTAAPGVGKRLAERI 131

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + EL+ K       +   ++      AH  +    A  AI AL  LG+ + Q  T VV  
Sbjct: 132 VLELRHK-------IPAHLTAGGG--AHRAN--PNAHEAIEALAALGFREAQVRT-VVGT 179

Query: 185 LKKEKNIADDSQIIRLALR 203
           L  +   A   ++IR ALR
Sbjct: 180 LAAQDPEAPVEELIRRALR 198


>gi|326799497|ref|YP_004317316.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium
           sp. 21]
 gi|326550261|gb|ADZ78646.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium
           sp. 21]
          Length = 194

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 25/197 (12%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           YV++DV GV Y +     +L   GKI D   C L+V   +++D   L+GF  + +R+ F 
Sbjct: 16  YVVLDVNGVGYHVNI---SLYTFGKIKDCEQCKLYVSFQVKEDAHSLYGFAEEGERRLFN 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-- 131
            L SV G+GA     +LS IT TE+  +I+  + K I +I GI  K A RI+ EL+ K  
Sbjct: 73  HLLSVSGIGASTGRMILSSITPTEIQTAIVQGDVKQIQRIKGIGPKSAQRIILELQDKLK 132

Query: 132 ---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188
              A +L SV Q              S+P     A++ALV LG+ + QA   +  + K  
Sbjct: 133 KEGADTLISVPQHQ------------SVPE---EALTALVMLGFNKAQAEKVLTEIQKNN 177

Query: 189 KNIADDSQIIRLALRAI 205
                  ++I+ ALR +
Sbjct: 178 AAQFTVEELIKEALRRL 194


>gi|288801343|ref|ZP_06406797.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288331726|gb|EFC70210.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 204

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  IKG++  +     +I+  GV Y +   + T S + GK  +   L+V     T  R 
Sbjct: 1   MIEYIKGDLAEITPALAVIETAGVGYALNISLTTYSAIQGK--EEVKLYVHEALVTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF +  +R+ + LL +V GVGA  A  +LS I+  EL   I   + +++  + G
Sbjct: 59  DSYTLYGFATKQERELYRLLITVSGVGANTARMILSSISPAELCNVIASGDERMLKSVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I +K A RI+ +LK K   LSS +  +    N   A I S  +    A+ AL  LG+   
Sbjct: 119 IGLKTAQRIIVDLKDKI--LSSGIATEFKVGNDSNATIDS--AVKDEAVGALTMLGFSPA 174

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +   V  +LK E  +  + Q+++LAL+ I
Sbjct: 175 PSAKVVSEILKNEPTLPVE-QVVKLALKQI 203


>gi|283785600|ref|YP_003365465.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
 gi|282949054|emb|CBG88657.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
          Length = 203

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPESGKEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        ++      A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAVEDGEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V + +   A    +IR ALRA
Sbjct: 181 VSKVARPD---ASSETLIREALRA 201


>gi|238756969|ref|ZP_04618157.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae
           ATCC 35236]
 gi|238704799|gb|EEP97328.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae
           ATCC 35236]
          Length = 205

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  +G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPNVGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  +   +    ++   +    I   A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALR+
Sbjct: 181 RLVSKIAKPG---ADCETLIRDALRS 203


>gi|120434550|ref|YP_860244.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella
           forsetii KT0803]
 gi|166230555|sp|A0LXS4|RUVA_GRAFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117576700|emb|CAL65169.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella
           forsetii KT0803]
          Length = 193

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 20/209 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  +KG +      YV+I+  G+ Y I   + T S    I D   + V TH+  ++D  
Sbjct: 1   MIHHLKGQLIEKNPTYVVIECNGIGYYINISLHTFSL---IPDSEAVSVYTHLQVKEDSH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF    +R+ F LL SV GVG   A  +LS +   E+ E+I  ++   I  + GI  
Sbjct: 58  TLYGFAEKSEREIFRLLISVSGVGTSTARMMLSSLQPREVTEAIASEDVATIQSVKGIGA 117

Query: 119 KIASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           K A R++ +LK K + +     V    S  NKE+            A+SAL  LGY + Q
Sbjct: 118 KTAQRVILDLKDKVLKVLGDDEVFVSQSNTNKEE------------ALSALEILGYNRRQ 165

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   V  +LK++     +S II++AL+ +
Sbjct: 166 AGKVVEKILKEDPESTVES-IIKMALKKL 193


>gi|42527369|ref|NP_972467.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC
           35405]
 gi|81411982|sp|Q73LJ9|RUVA_TREDE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|41817954|gb|AAS12378.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC
           35405]
          Length = 201

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 15/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G + G   D V ++  G+ + I+     L  LG +G    ++   + R+DQ+RL
Sbjct: 1   MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V+GVG R A+ ++S + ++ L +++   +   + + PG+  K 
Sbjct: 61  FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNSSSLEKALEEGDLDTLQKAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKGK  +L+ V  +  + V+ E   I          ++AL  +G+ +      
Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCEYEDI----------VTALTEMGFERKSVIVQ 170

Query: 181 VVSVLKKEKNIADD-----SQIIRLALRAIS 206
           V  + ++ K    D      ++ R ++ A+S
Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201


>gi|330721244|gb|EGG99343.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC2047]
          Length = 197

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+IKG +       + +DVQGV Y +  P+ T   L  +    +L+    +R+D   L
Sbjct: 1   MIGRIKGVLIEKSPPDICVDVQGVGYELQVPMNTFYRLPDVDHPVSLYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +  + GVG ++ + +LS I A++ V  +   +   + ++PGI  K 
Sbjct: 61  YGFYEARERELFRAVIKINGVGPKLGLAILSGIEASDFVRVVHNNDVAALTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K            + +N   A           A+SAL+ LGY    A  A
Sbjct: 121 AERLVIEMRDKLKDWPEAPGDLQASLNSAAADGTD------EAVSALLALGYKPKDAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S+  +  +     ++IR AL++++
Sbjct: 175 IKSIAVEGMS---SQELIRQALKSMA 197


>gi|157693178|ref|YP_001487640.1| Holliday junction DNA helicase RuvA [Bacillus pumilus SAFR-032]
 gi|167012657|sp|A8FFR3|RUVA_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157681936|gb|ABV63080.1| crossover junction endoribonuclease subunit A [Bacillus pumilus
           SAFR-032]
          Length = 201

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   YV+I+  GV Y +Y P   +  + K     T++   ++++D   L
Sbjct: 1   MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINKQ---ETIYTYHYIKEDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+      ++ +I  ++   + + PG+  K 
Sbjct: 58  YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAIN-AISALVNLGYGQDQAT 178
           A +I+ +LKGK   L+ VV + +  +   + HI       A++ A+ AL  LGYG D+  
Sbjct: 118 ARQIILDLKGK---LADVVPEMIGNLFNHEDHIQVETQQTALDEALEALSVLGYG-DREI 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  +LK+EKN+  D Q ++ AL+ +
Sbjct: 174 KKVYPLLKEEKNLTTD-QYVKKALQKM 199


>gi|170726918|ref|YP_001760944.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908]
 gi|229560127|sp|B1KGY0|RUVA_SHEWM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169812265|gb|ACA86849.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908]
          Length = 205

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++V G+ Y +  P+ +   L  +     ++    +R+D   L
Sbjct: 1   MIGRLRGVLVEKQAPEILLEVAGLGYEVQMPLTSFYELPDLNQEAQIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++ + +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E++ K   L S+++       +        P+  +N     AI+AL++LGY   
Sbjct: 121 AERLLVEMRDK---LKSLLETSAGSEREFMLKSNYTPAPVVNTAEEDAIAALLSLGYKPA 177

Query: 176 QATTAVVSVLKK 187
           QA+ AV +  K+
Sbjct: 178 QASKAVSAAFKE 189


>gi|259908219|ref|YP_002648575.1| Holliday junction DNA helicase RuvA [Erwinia pyrifoliae Ep1/96]
 gi|224963841|emb|CAX55343.1| Holliday junction ATP-dependent DNA helicase [Erwinia pyrifoliae
           Ep1/96]
 gi|283478149|emb|CAY74065.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           pyrifoliae DSM 12163]
 gi|310767866|gb|ADP12816.1| Holliday junction DNA helicase RuvA [Erwinia sp. Ejp617]
          Length = 204

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y +  P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPELQQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++       + ++PG+  K 
Sbjct: 61  FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+K +   +      D+   +   A    M     N     A++AL+ LGY   
Sbjct: 121 AERLVVEMKDRFKGMHG----DLFASDAPFALTSEMTKETGNDAESEAVAALIALGYKPQ 176

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A+  +V   K  K  AD   +IR ALRA
Sbjct: 177 EASRMIV---KTGKPDADCETLIREALRA 202


>gi|91216982|ref|ZP_01253945.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis
           ATCC 700755]
 gi|91184853|gb|EAS71233.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis
           ATCC 700755]
          Length = 193

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      ++++D  G+ Y +   + T S L K  +  T++    +++D   L
Sbjct: 1   MITQLRGRLLEKNPTHIVVDCNGIGYEVNISLHTFSRL-KGEEQITIYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F  L SV G+GA  A  +LS +T  ++VE+I  ++S  I  I GI  K 
Sbjct: 60  YGFMEKAERLVFRQLLSVSGIGANTARMMLSSLTPEQVVEAISTEDSDTIQSIKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A R++ +LK K  S            ++E + I + PS +    A+SAL  LGY + Q+ 
Sbjct: 120 AQRVILDLKDKIRS------------SEEYSEIVNTPSNSNKEEALSALETLGYTRKQSG 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             +  +     + A+   II+LAL+ +
Sbjct: 168 KIISKICNNNPD-ANVEDIIKLALKNL 193


>gi|301645623|ref|ZP_07245552.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1]
 gi|301076155|gb|EFK90961.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1]
          Length = 203

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSESLIREALRA 201


>gi|150390102|ref|YP_001320151.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens
           QYMF]
 gi|167012654|sp|A6TQM4|RUVA_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149949964|gb|ABR48492.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens
           QYMF]
          Length = 194

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           D ++++V G+ Y I   I + S + KIG   TLF    +R+D+  L+GF+   +   F  
Sbjct: 15  DKIIVEVNGIGYRINSSINSASQV-KIGQVSTLFTHFVLREDEAHLYGFVDKEELAMFKK 73

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L SV  +G +VA G+LS  T   L   I+  +++ IA+ PG+  K A R++ ELK K   
Sbjct: 74  LISVSKIGPKVAAGILSTYTPQRLGAYIVSNDAQAIAKSPGVGKKTAERMILELKDKID- 132

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
             S V+ D +  N E  +   +       + AL+ LGY + +   A  +V
Sbjct: 133 -DSQVEYDQNFFNHENKNNNEV-------VDALMALGYTKHEGEQAASAV 174


>gi|160871606|ref|ZP_02061738.1| holliday junction DNA helicase RuvA [Rickettsiella grylli]
 gi|159120405|gb|EDP45743.1| holliday junction DNA helicase RuvA [Rickettsiella grylli]
          Length = 199

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 9/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI +++G +       +L++V     Y I   + T   L   G+   L+ +  +R+D   
Sbjct: 1   MINRLRGILVEKQPPILLVEVANAFTYEIQASMHTFYQLPHCGEKVFLYTQFIVREDGHF 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F  L  V GVG +VA+G+LS+I  TE V  +  QN   +  +PGI  K
Sbjct: 61  LYGFSTPEERFLFTQLLKVSGVGPKVALGILSKIEVTEFVSCVEQQNVNSLQAVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++ +  +LS         ++K    I S+     +AI+AL+ LGY   +A+ 
Sbjct: 121 TAERLIIEMRDRLRNLS---HNQPEILDKNT--IQSLKHIQQDAIAALMALGYKNQEASR 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV+ +  K+ +++ ++ +IR AL  I+
Sbjct: 176 AVLRI--KDASLSLEA-LIRHALNTIN 199


>gi|300951483|ref|ZP_07165318.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1]
 gi|300956626|ref|ZP_07168905.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1]
 gi|300316608|gb|EFJ66392.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1]
 gi|300449233|gb|EFK12853.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1]
          Length = 203

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPTADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|191168085|ref|ZP_03029884.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A]
 gi|256017935|ref|ZP_05431800.1| Holliday junction DNA helicase RuvA [Shigella sp. D9]
 gi|260855801|ref|YP_003229692.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O26:H11 str. 11368]
 gi|260868396|ref|YP_003234798.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O111:H- str. 11128]
 gi|300816247|ref|ZP_07096469.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1]
 gi|300924950|ref|ZP_07140877.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1]
 gi|301327650|ref|ZP_07220858.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1]
 gi|307314227|ref|ZP_07593837.1| Holliday junction DNA helicase RuvA [Escherichia coli W]
 gi|309794242|ref|ZP_07688666.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7]
 gi|332278969|ref|ZP_08391382.1| holliday junction helicase subunit B [Shigella sp. D9]
 gi|190901883|gb|EDV61633.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A]
 gi|257754450|dbj|BAI25952.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O26:H11 str. 11368]
 gi|257764752|dbj|BAI36247.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O111:H- str. 11128]
 gi|300418886|gb|EFK02197.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1]
 gi|300530937|gb|EFK51999.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1]
 gi|300845798|gb|EFK73558.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1]
 gi|306906196|gb|EFN36714.1| Holliday junction DNA helicase RuvA [Escherichia coli W]
 gi|308122147|gb|EFO59409.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7]
 gi|315061167|gb|ADT75494.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli W]
 gi|320198055|gb|EFW72663.1| Holliday junction DNA helicase RuvA [Escherichia coli EC4100B]
 gi|323152650|gb|EFZ38926.1| holliday junction DNA helicase RuvA [Escherichia coli EPECa14]
 gi|323180658|gb|EFZ66203.1| holliday junction DNA helicase RuvA [Escherichia coli 1180]
 gi|323378256|gb|ADX50524.1| Holliday junction DNA helicase RuvA [Escherichia coli KO11]
 gi|324113597|gb|EGC07572.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii B253]
 gi|324118921|gb|EGC12810.1| Holliday junction DNA helicase RuvA [Escherichia coli E1167]
 gi|332101321|gb|EGJ04667.1| holliday junction helicase subunit B [Shigella sp. D9]
          Length = 203

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|317048520|ref|YP_004116168.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b]
 gi|316950137|gb|ADU69612.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b]
          Length = 204

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VLI+  GV Y ++ P+     L ++     +F +  +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLIEAHGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +   V+ ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAVLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-------AISALVNLGYG 173
           A R++ E+K +   +             + A   + PS A         A++ALV LGY 
Sbjct: 121 AERLVVEMKDRFKGMHG------DLFGGDNAFTLTTPSAAPENNDAEAEAVAALVALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A+  V  + + +   AD   +IR ALRA
Sbjct: 175 PQEASRMVSKIGRPD---ADCETLIREALRA 202


>gi|227499581|ref|ZP_03929688.1| crossover junction endoribonuclease subunit A [Anaerococcus
           tetradius ATCC 35098]
 gi|227218340|gb|EEI83594.1| crossover junction endoribonuclease subunit A [Anaerococcus
           tetradius ATCC 35098]
          Length = 195

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 17/190 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G++  + E+  +I+   + Y+IY  + TLS L +I     ++    +R+D I L
Sbjct: 1   MISYIIGHVRNIDEESFIIENNNIGYLIYSSLATLSNL-EINSEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F LL SV  +G + AMG+LS I+  E+  +++  +   +    GI  K 
Sbjct: 60  FGFFTKDELEMFSLLTSVSTIGPKTAMGILSSISVNEIKTAVVNNDIDKLTLAKGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           ASRI+ EL  K   +S V    ++QD   +N++         F + A  AL+NLGY Q  
Sbjct: 120 ASRIILELVDKVKKMSFVPVENIKQD-DMLNED---------FEV-AKEALLNLGY-QKN 167

Query: 177 ATTAVVSVLK 186
               V+S LK
Sbjct: 168 DVDRVLSELK 177


>gi|288924630|ref|ZP_06418567.1| holliday junction DNA helicase RuvA [Prevotella buccae D17]
 gi|315607515|ref|ZP_07882510.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           buccae ATCC 33574]
 gi|288338417|gb|EFC76766.1| holliday junction DNA helicase RuvA [Prevotella buccae D17]
 gi|315250698|gb|EFU30692.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           buccae ATCC 33574]
          Length = 205

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 23/216 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  IKG +  L     +I+  GV Y +   + T + + GK      L+V     T  R 
Sbjct: 1   MIEYIKGELTELTPALAVIEAAGVGYALNISLNTYTAIQGK--KETKLYVHEALTTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF S  +R  + LL +V GVGA  A  +LS ++A EL   I   N K++  + G
Sbjct: 59  DAFTLYGFFSKQERSLYRLLITVSGVGANTARMILSAMSAKELCGVISTGNDKMLKSVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVN 169
           I +K A RI+ +LK K ISL          +  E      +PS  ++      A+SAL  
Sbjct: 119 IGLKTAQRIIVDLKDKIISLG---------IADELPASGGLPSMPVDNATRDEAVSALTM 169

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           LG+    +   VV++L+++ ++A +  +++ AL+ I
Sbjct: 170 LGFSPAPSQKVVVAILQEQPDMAVE-MVVKEALKRI 204


>gi|28198789|ref|NP_779103.1| Holliday junction DNA helicase motor protein [Xylella fastidiosa
           Temecula1]
 gi|182681488|ref|YP_001829648.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23]
 gi|32130012|sp|Q87D02|RUVA_XYLFT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560141|sp|B2I4S9|RUVA_XYLF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28056880|gb|AAO28752.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           Temecula1]
 gi|182631598|gb|ACB92374.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23]
 gi|307579942|gb|ADN63911.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 194

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 74/137 (54%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L  +G    LF     + D   L
Sbjct: 1   MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R+ F  LQ V G+G ++A+ +LS ++       I   ++  +  IPG+  K 
Sbjct: 61  YGFLSESERRLFRHLQRVSGIGTKIALAILSSVSVDTFAGLIQAGDANALTVIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ EL+ +A   ++
Sbjct: 121 AERMLVELRDRAADFNN 137


>gi|325479262|gb|EGC82358.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 195

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 14/179 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I  + ED  +I+   + YII+  + TL+ + +I +   ++    +R+D I L
Sbjct: 1   MISYIIGQIRAINEDNFVIENNSMGYIIFSSLTTLTNI-EINNEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S  + + F+ L SV  +G + A+G+LS ++  E+  +I+  +   +    GI  K 
Sbjct: 60  FGFISKDELEMFLHLTSVSTIGPKTALGILSSLSVNEIKNAILNNDINKLTVAKGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           ASRI+ EL  K   ++ V     +D+S VN++         F + A  AL+NLGY ++ 
Sbjct: 120 ASRIILELVDKVKKMNFVPIEKTEDVSVVNED---------FDV-AKEALLNLGYQKND 168


>gi|312882586|ref|ZP_07742326.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369746|gb|EFP97258.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 205

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 110/210 (52%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILVEKQPPELLIEVNGLGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+K +    S+    D+     + A    +P  +++     A+SAL+ LGY   
Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPYTDAAVADKLPESSVSNAEEEAVSALLALGYKPT 177

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+  V  V+ +  +     ++IR AL+++
Sbjct: 178 QASKVVSQVMVEGMS---SEKLIREALKSM 204


>gi|15802274|ref|NP_288298.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7
           EDL933]
 gi|15831825|ref|NP_310598.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16129814|ref|NP_416375.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|26248127|ref|NP_754167.1| Holliday junction DNA helicase RuvA [Escherichia coli CFT073]
 gi|82543694|ref|YP_407641.1| Holliday junction DNA helicase RuvA [Shigella boydii Sb227]
 gi|89108701|ref|AP_002481.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|91211086|ref|YP_541072.1| Holliday junction DNA helicase RuvA [Escherichia coli UTI89]
 gi|110641979|ref|YP_669709.1| Holliday junction DNA helicase RuvA [Escherichia coli 536]
 gi|117624013|ref|YP_852926.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC
           O1]
 gi|157159402|ref|YP_001463164.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A]
 gi|168747889|ref|ZP_02772911.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757895|ref|ZP_02782902.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762345|ref|ZP_02787352.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770844|ref|ZP_02795851.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776592|ref|ZP_02801599.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783161|ref|ZP_02808168.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788281|ref|ZP_02813288.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC869]
 gi|168801903|ref|ZP_02826910.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC508]
 gi|170081517|ref|YP_001730837.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170683558|ref|YP_001743383.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5]
 gi|187730219|ref|YP_001879638.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94]
 gi|191173018|ref|ZP_03034552.1| Holliday junction DNA helicase RuvA [Escherichia coli F11]
 gi|193066070|ref|ZP_03047127.1| Holliday junction DNA helicase RuvA [Escherichia coli E22]
 gi|194429662|ref|ZP_03062180.1| Holliday junction DNA helicase RuvA [Escherichia coli B171]
 gi|195940293|ref|ZP_03085675.1| Holliday junction DNA helicase motor protein [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810719|ref|ZP_03252595.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816922|ref|ZP_03258042.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4045]
 gi|209396228|ref|YP_002270944.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919228|ref|YP_002293312.1| Holliday junction DNA helicase RuvA [Escherichia coli SE11]
 gi|215487074|ref|YP_002329505.1| Holliday junction DNA helicase RuvA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328695|ref|ZP_03444776.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554449|ref|YP_002387362.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI1]
 gi|218558726|ref|YP_002391639.1| Holliday junction DNA helicase RuvA [Escherichia coli S88]
 gi|218689799|ref|YP_002398011.1| Holliday junction DNA helicase RuvA [Escherichia coli ED1a]
 gi|218695427|ref|YP_002403094.1| Holliday junction DNA helicase RuvA [Escherichia coli 55989]
 gi|218699567|ref|YP_002407196.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI39]
 gi|218705362|ref|YP_002412881.1| Holliday junction DNA helicase RuvA [Escherichia coli UMN026]
 gi|227885711|ref|ZP_04003516.1| Holliday junction DNA helicase motor protein [Escherichia coli
           83972]
 gi|237705815|ref|ZP_04536296.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA]
 gi|238901076|ref|YP_002926872.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli BW2952]
 gi|254793485|ref|YP_003078322.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256022473|ref|ZP_05436338.1| Holliday junction DNA helicase RuvA [Escherichia sp. 4_1_40B]
 gi|260844205|ref|YP_003221983.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O103:H2 str. 12009]
 gi|261227638|ref|ZP_05941919.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258196|ref|ZP_05950729.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283043|ref|YP_003499861.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           O55:H7 str. CB9615]
 gi|293405356|ref|ZP_06649348.1| ruvA [Escherichia coli FVEC1412]
 gi|293410173|ref|ZP_06653749.1| Holliday junction DNA helicase RuvA [Escherichia coli B354]
 gi|293415176|ref|ZP_06657819.1| Holliday junction DNA helicase RuvA [Escherichia coli B185]
 gi|293446248|ref|ZP_06662670.1| Holliday junction DNA helicase RuvA [Escherichia coli B088]
 gi|298380998|ref|ZP_06990597.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           FVEC1302]
 gi|300824197|ref|ZP_07104315.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7]
 gi|300899111|ref|ZP_07117394.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1]
 gi|300904745|ref|ZP_07122575.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1]
 gi|300917562|ref|ZP_07134217.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1]
 gi|300935836|ref|ZP_07150794.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1]
 gi|300982165|ref|ZP_07175900.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1]
 gi|300994110|ref|ZP_07180693.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1]
 gi|301018303|ref|ZP_07182812.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1]
 gi|301029311|ref|ZP_07192408.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1]
 gi|301050785|ref|ZP_07197642.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1]
 gi|301304450|ref|ZP_07210562.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1]
 gi|306814309|ref|ZP_07448475.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101]
 gi|307138524|ref|ZP_07497880.1| Holliday junction DNA helicase RuvA [Escherichia coli H736]
 gi|312967063|ref|ZP_07781281.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75]
 gi|331642475|ref|ZP_08343610.1| holliday junction DNA helicase RuvA [Escherichia coli H736]
 gi|331647458|ref|ZP_08348550.1| holliday junction DNA helicase RuvA [Escherichia coli M605]
 gi|331653270|ref|ZP_08354275.1| holliday junction DNA helicase RuvA [Escherichia coli M718]
 gi|331657910|ref|ZP_08358872.1| holliday junction DNA helicase RuvA [Escherichia coli TA206]
 gi|331673391|ref|ZP_08374159.1| holliday junction DNA helicase RuvA [Escherichia coli TA280]
 gi|331677742|ref|ZP_08378417.1| holliday junction DNA helicase RuvA [Escherichia coli H591]
 gi|331683367|ref|ZP_08383968.1| holliday junction DNA helicase RuvA [Escherichia coli H299]
 gi|67472389|sp|P0A809|RUVA_ECOLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67472390|sp|P0A810|RUVA_ECOL6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67472391|sp|P0A811|RUVA_ECO57 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90135806|sp|Q322E5|RUVA_SHIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123343927|sp|Q0TGX1|RUVA_ECOL5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123387921|sp|Q1RAS3|RUVA_ECOUT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230548|sp|A1AC22|RUVA_ECOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167012658|sp|A7ZMY5|RUVA_ECO24 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698730|sp|B5YR06|RUVA_ECO5E RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698731|sp|B6IBU0|RUVA_ECOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725440|sp|B7MBS0|RUVA_ECO45 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725441|sp|B7NS57|RUVA_ECO7I RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725442|sp|B7M2F2|RUVA_ECO8A RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725443|sp|B7NBL2|RUVA_ECOLU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725444|sp|B1LD10|RUVA_ECOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560029|sp|B1XHC9|RUVA_ECODH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560128|sp|B2TWQ2|RUVA_SHIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766959|sp|B7USN8|RUVA_ECO27 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766960|sp|B7L7R4|RUVA_ECO55 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766961|sp|B7MVP7|RUVA_ECO81 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|259495641|sp|C4ZQE5|RUVA_ECOBW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|5107494|pdb|1BDX|A Chain A, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|5107495|pdb|1BDX|B Chain B, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|5107496|pdb|1BDX|C Chain C, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|5107497|pdb|1BDX|D Chain D, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|9955149|pdb|1C7Y|A Chain A, E.Coli Ruva-Holliday Junction Complex
 gi|157831340|pdb|1HJP|A Chain A, Holliday Junction Binding Protein Ruva From E. Coli
 gi|12515917|gb|AAG56851.1|AE005408_9 Holliday junction helicase subunit B; branch migration; repair
           [Escherichia coli O157:H7 str. EDL933]
 gi|26108530|gb|AAN80732.1|AE016761_307 Holliday junction DNA helicase ruvA [Escherichia coli CFT073]
 gi|147782|gb|AAA24612.1| ruvA protein (gtg start) [Escherichia coli]
 gi|1736508|dbj|BAA15672.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|1788168|gb|AAC74931.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13362039|dbj|BAB35994.1| Holliday junction helicase subunit B [Escherichia coli O157:H7 str.
           Sakai]
 gi|81245105|gb|ABB65813.1| Holliday junction helicase subunit B [Shigella boydii Sb227]
 gi|91072660|gb|ABE07541.1| RuvA protein, Holliday junction helicase subunit B [Escherichia
           coli UTI89]
 gi|110343571|gb|ABG69808.1| holliday junction DNA helicase RuvA [Escherichia coli 536]
 gi|115513137|gb|ABJ01212.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC
           O1]
 gi|157081432|gb|ABV21140.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A]
 gi|169889352|gb|ACB03059.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170521276|gb|ACB19454.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5]
 gi|187427211|gb|ACD06485.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94]
 gi|187768087|gb|EDU31931.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017456|gb|EDU55578.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999499|gb|EDU68485.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355165|gb|EDU73584.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360288|gb|EDU78707.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367348|gb|EDU85764.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372002|gb|EDU90418.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC869]
 gi|189376026|gb|EDU94442.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC508]
 gi|190906729|gb|EDV66334.1| Holliday junction DNA helicase RuvA [Escherichia coli F11]
 gi|192926307|gb|EDV80944.1| Holliday junction DNA helicase RuvA [Escherichia coli E22]
 gi|194412304|gb|EDX28608.1| Holliday junction DNA helicase RuvA [Escherichia coli B171]
 gi|195182923|dbj|BAG66491.1| Holliday junction helicase subunit B [Escherichia coli O111:H-]
 gi|208725235|gb|EDZ74942.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731265|gb|EDZ79954.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4045]
 gi|209157628|gb|ACI35061.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209767468|gb|ACI82046.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767470|gb|ACI82047.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767472|gb|ACI82048.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767474|gb|ACI82049.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767476|gb|ACI82050.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209912487|dbj|BAG77561.1| holliday junction helicase subunit RuvA [Escherichia coli SE11]
 gi|215265146|emb|CAS09534.1| RuvA component of RuvABC resolvasome, regulatory subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217318042|gb|EEC26469.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352159|emb|CAU97898.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli 55989]
 gi|218361217|emb|CAQ98801.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli IAI1]
 gi|218365495|emb|CAR03222.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli S88]
 gi|218369553|emb|CAR17322.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli IAI39]
 gi|218427363|emb|CAR08163.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli ED1a]
 gi|218432459|emb|CAR13352.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli UMN026]
 gi|222033610|emb|CAP76351.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           LF82]
 gi|226900572|gb|EEH86831.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA]
 gi|227837284|gb|EEJ47750.1| Holliday junction DNA helicase motor protein [Escherichia coli
           83972]
 gi|238860169|gb|ACR62167.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli BW2952]
 gi|254592885|gb|ACT72246.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|257759352|dbj|BAI30849.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O103:H2 str. 12009]
 gi|260449016|gb|ACX39438.1| Holliday junction DNA helicase RuvA [Escherichia coli DH1]
 gi|281178931|dbj|BAI55261.1| holliday junction helicase subunit RuvA [Escherichia coli SE15]
 gi|284921781|emb|CBG34854.1| holliday junction ATP-dependent DNA helicase [Escherichia coli 042]
 gi|290762916|gb|ADD56877.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323078|gb|EFE62506.1| Holliday junction DNA helicase RuvA [Escherichia coli B088]
 gi|291427564|gb|EFF00591.1| ruvA [Escherichia coli FVEC1412]
 gi|291432824|gb|EFF05803.1| Holliday junction DNA helicase RuvA [Escherichia coli B185]
 gi|291470641|gb|EFF13125.1| Holliday junction DNA helicase RuvA [Escherichia coli B354]
 gi|294493531|gb|ADE92287.1| Holliday junction DNA helicase RuvA [Escherichia coli IHE3034]
 gi|298278440|gb|EFI19954.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           FVEC1302]
 gi|299877737|gb|EFI85948.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1]
 gi|300297540|gb|EFJ53925.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1]
 gi|300307321|gb|EFJ61841.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1]
 gi|300357268|gb|EFJ73138.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1]
 gi|300399739|gb|EFJ83277.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1]
 gi|300403329|gb|EFJ86867.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1]
 gi|300406372|gb|EFJ89910.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1]
 gi|300415216|gb|EFJ98526.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1]
 gi|300458948|gb|EFK22441.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1]
 gi|300523268|gb|EFK44337.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7]
 gi|300840301|gb|EFK68061.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1]
 gi|305852468|gb|EFM52919.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101]
 gi|307553880|gb|ADN46655.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli
           ABU 83972]
 gi|307626656|gb|ADN70960.1| Holliday junction DNA helicase RuvA [Escherichia coli UM146]
 gi|312288527|gb|EFR16429.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75]
 gi|312946461|gb|ADR27288.1| Holliday junction DNA helicase RuvA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315136504|dbj|BAJ43663.1| Holliday junction DNA resolvasome [Escherichia coli DH1]
 gi|315257307|gb|EFU37275.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 85-1]
 gi|315286570|gb|EFU46005.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 110-3]
 gi|315290340|gb|EFU49716.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 153-1]
 gi|315296552|gb|EFU55849.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 16-3]
 gi|320173573|gb|EFW48768.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae CDC
           74-1112]
 gi|320182601|gb|EFW57490.1| Holliday junction DNA helicase RuvA [Shigella boydii ATCC 9905]
 gi|320187795|gb|EFW62469.1| Holliday junction DNA helicase RuvA [Shigella flexneri CDC 796-83]
 gi|320188562|gb|EFW63224.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194423|gb|EFW69054.1| Holliday junction DNA helicase RuvA [Escherichia coli WV_060327]
 gi|320641715|gb|EFX11103.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           G5101]
 gi|320647075|gb|EFX15908.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str.
           493-89]
 gi|320652358|gb|EFX20656.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str.
           H 2687]
 gi|320657959|gb|EFX25721.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658532|gb|EFX26226.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668430|gb|EFX35257.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323158654|gb|EFZ44668.1| holliday junction DNA helicase RuvA [Escherichia coli E128010]
 gi|323174753|gb|EFZ60369.1| holliday junction DNA helicase RuvA [Escherichia coli LT-68]
 gi|323186868|gb|EFZ72187.1| holliday junction DNA helicase RuvA [Escherichia coli RN587/1]
 gi|323940471|gb|EGB36662.1| Holliday junction DNA helicase RuvA [Escherichia coli E482]
 gi|323948253|gb|EGB44241.1| Holliday junction DNA helicase RuvA [Escherichia coli H120]
 gi|323952363|gb|EGB48236.1| Holliday junction DNA helicase RuvA [Escherichia coli H252]
 gi|323956492|gb|EGB52234.1| Holliday junction DNA helicase RuvA [Escherichia coli H263]
 gi|323968281|gb|EGB63688.1| Holliday junction DNA helicase RuvA [Escherichia coli M863]
 gi|323977955|gb|EGB73041.1| Holliday junction DNA helicase RuvA [Escherichia coli TW10509]
 gi|324007232|gb|EGB76451.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 57-2]
 gi|324012870|gb|EGB82089.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 60-1]
 gi|324018004|gb|EGB87223.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 117-3]
 gi|325496996|gb|EGC94855.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ECD227]
 gi|326342241|gb|EGD66022.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           1044]
 gi|326343791|gb|EGD67553.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           1125]
 gi|327252987|gb|EGE64641.1| holliday junction DNA helicase RuvA [Escherichia coli STEC_7v]
 gi|330911671|gb|EGH40181.1| holliday junction DNA helicase RuvA [Escherichia coli AA86]
 gi|331039273|gb|EGI11493.1| holliday junction DNA helicase RuvA [Escherichia coli H736]
 gi|331043182|gb|EGI15320.1| holliday junction DNA helicase RuvA [Escherichia coli M605]
 gi|331049368|gb|EGI21440.1| holliday junction DNA helicase RuvA [Escherichia coli M718]
 gi|331056158|gb|EGI28167.1| holliday junction DNA helicase RuvA [Escherichia coli TA206]
 gi|331069589|gb|EGI40976.1| holliday junction DNA helicase RuvA [Escherichia coli TA280]
 gi|331074202|gb|EGI45522.1| holliday junction DNA helicase RuvA [Escherichia coli H591]
 gi|331079582|gb|EGI50779.1| holliday junction DNA helicase RuvA [Escherichia coli H299]
 gi|332090038|gb|EGI95138.1| holliday junction DNA helicase RuvA [Shigella boydii 5216-82]
 gi|332096672|gb|EGJ01663.1| holliday junction DNA helicase RuvA [Shigella boydii 3594-74]
 gi|332343587|gb|AEE56921.1| holliday junction DNA helicase RuvA [Escherichia coli UMNK88]
 gi|333003565|gb|EGK23105.1| holliday junction DNA helicase RuvA [Shigella flexneri VA-6]
 gi|333004714|gb|EGK24237.1| holliday junction DNA helicase RuvA [Shigella flexneri K-272]
 gi|333018434|gb|EGK37732.1| holliday junction DNA helicase RuvA [Shigella flexneri K-227]
          Length = 203

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|315180569|gb|ADT87483.1| Holliday junction DNA helicase motor protein [Vibrio furnissii NCTC
           11218]
          Length = 205

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IGD   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAIN----AISALVNLGYGQD 175
           A R++ E+K +   L      D+     + A + +M  S   N    A+SAL+ LGY   
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPLDAMGASHDQNAEEEAVSALLALGYKPA 177

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+ AV  V + +       Q+IR AL+++
Sbjct: 178 QASKAVSQVSQPDMT---SEQLIREALKSM 204


>gi|332701178|ref|ZP_08421266.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551327|gb|EGJ48371.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 202

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 110/209 (52%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNI-EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G + E   +  +++   GV Y ++ P+  L+ L   G   +   E  +R+D   
Sbjct: 1   MIGYIRGTLLEQTEKSCLVLTAGGVGYELHLPLPALARLPAEGQEVSFHTEQVVREDSQD 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S+  +G +  + +LS+    +L + ++ ++   + ++ GI  K
Sbjct: 61  LYGFETSEERRLFHVLLSIPNLGPKKGLAILSQFHPDDLRQIVLHEDIAALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177
              +I+ ELK K  S       D   V ++ A     P  ++  +A++ L NLGY +++A
Sbjct: 121 TGQQILWELKYKLAS------ADAPAVGRKPA----APGRSVLQDALAGLTNLGYSEEEA 170

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              +  + + E ++ D +Q++R AL+AI+
Sbjct: 171 RPVLHKLFEAEPDL-DVAQLLREALKAIA 198


>gi|326318908|ref|YP_004236580.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375744|gb|ADX48013.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 190

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E       L   +       N  QA I          + AL+ LGY  D+   +
Sbjct: 121 AERLLLE---LKGKLGVDIGARPEAANDAQADI----------LQALLALGY-NDREGAS 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +  L K+  +   S+ I+LAL+A++
Sbjct: 167 ALKALPKDVGV---SEGIKLALKALA 189


>gi|262276112|ref|ZP_06053921.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886]
 gi|262219920|gb|EEY71236.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886]
          Length = 209

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 17/215 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++V GV Y +  P+     L ++G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEILLEVNGVGYEVSMPMSCFYELPEVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R  F  +    GVG ++ + +LS +TAT+ V+S+  ++   + +IPG+  K 
Sbjct: 61  YGFNTTVERALFREVIKANGVGPKLGLAILSGMTATQFVDSVEREDVSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGK-----AISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E++ +     A  L +      +   N  +  + +       AISAL+ LGY  
Sbjct: 121 AERLVIEMRDRLKNWHAFDLFTPHADAAVRRANGTETVVAASTDPKDEAISALIALGYKA 180

Query: 175 DQATTAVVSVLKKEKNIADD----SQIIRLALRAI 205
            QA   V       K +A D      IIR ALR++
Sbjct: 181 AQAEKVV-------KQVAVDGMKSEAIIRDALRSM 208


>gi|325963419|ref|YP_004241325.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469506|gb|ADX73191.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 214

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +ID+ G    +    +TLS L + G+   LF    +R+D + L
Sbjct: 1   MISFLRGTVAHVGLSTAVIDLNGAGMSVNATPQTLSGL-RTGEEGQLFTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R+ F +L SV GVG R+A+ VL+      +  +    +SK   ++PGI  K+
Sbjct: 60  FGFASDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDSKTFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK      +V Q  +          +  S+    ++A+ +LG+ +  A+ +
Sbjct: 120 AGRIVLELAGK------LVPQGTAGTAAAPTAAEA--SWKPQVVAAMTSLGWSEKDASAS 171

Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203
           +   L  E  ++   +  +I+R  LR
Sbjct: 172 IDKALADEPEVSFRGNVPEILRTTLR 197


>gi|86140746|ref|ZP_01059305.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832688|gb|EAQ51137.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 193

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 18/208 (8%)

Query: 1   MIGKIKGN-IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G  IE  + D V+I+  GV Y +   + T S L + G+   L+   H+++D   
Sbjct: 1   MITFLRGKLIEKNHTD-VVIECHGVGYFVNISLHTFSLLPE-GESIMLYTYLHIKEDAHT 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F LL SV GVG  +A  +LS +  +++ ++I   + K I  + GI  K
Sbjct: 59  LYGFAHKSEREIFKLLISVSGVGTSIARTMLSSLEPSQVKQAIATGDVKTIQGVKGIGAK 118

Query: 120 IASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ +LK K + +  +  V       NKE+            A+SAL  LG+ + QA
Sbjct: 119 TAQRVILDLKDKILKVYDINEVSPIADNTNKEE------------ALSALETLGFARKQA 166

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
                ++++ E   A    II+LAL+ +
Sbjct: 167 EKVCTTIVRDEPQ-ASVETIIKLALKKL 193


>gi|92113970|ref|YP_573898.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter
           salexigens DSM 3043]
 gi|91797060|gb|ABE59199.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter
           salexigens DSM 3043]
          Length = 206

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 88/178 (49%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +   + TL  L   G+   L     +R+D   L
Sbjct: 3   MIGRLRGTLLEKQPPWIVVDVGGVGYELETSMTTLLALPGPGEEVQLHTHLAVREDAHLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +RQ F  L  V GVG ++A+ +LS +     +  ++  + K + ++PG+  K 
Sbjct: 63  YGFARGDERQLFRALIKVNGVGPKLALAILSGMDQEAFIRCVMEDDIKALTRLPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ +        +  +  +    +   + P    +A SALV LGY   +A+
Sbjct: 123 AERLVVEMRDRFPHWQLEQENGLHALELGASPTTAAPDPQADAESALVALGYKPTEAS 180


>gi|325853052|ref|ZP_08171201.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS
           18C-A]
 gi|325484426|gb|EGC87347.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS
           18C-A]
          Length = 222

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 25/217 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  I+G +  L     +++  GV Y +   + T S L GK      L+V     T  R 
Sbjct: 18  MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSALQGKT--TVKLYVHEAIMTGGRD 75

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF S  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + G
Sbjct: 76  DSYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKG 135

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168
           I ++ A RI+ +LK K      ++Q  ++    ++ H+ S P + A++      A+SAL 
Sbjct: 136 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPGTPAVDTAIKDEAVSALT 185

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            LG+    +   VVS+L  + ++  + Q+++LAL+ I
Sbjct: 186 MLGFSPAPSAKVVVSILTDQPDLPVE-QVVKLALKMI 221


>gi|238788520|ref|ZP_04632313.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC
           33641]
 gi|238723433|gb|EEQ15080.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC
           33641]
          Length = 194

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 3/188 (1%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           VL++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R  F  L 
Sbjct: 8   VLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELI 67

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K +   L+
Sbjct: 68  KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 127

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
             +  +   +    A           A+SALV LGY   +A+  V  + K     AD   
Sbjct: 128 GDLFNNTGDIQLPSASQTPDADIEAEAVSALVALGYKPQEASRLVSKIAKPG---ADCET 184

Query: 197 IIRLALRA 204
           +IR ALRA
Sbjct: 185 LIRDALRA 192


>gi|218961233|ref|YP_001741008.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729890|emb|CAO80802.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas
           acidaminovorans]
          Length = 202

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 99/195 (50%), Gaps = 18/195 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +        +I+  G+ + +  PI T   L   G  C L    H+ QD IR+
Sbjct: 4   MIQYISGTLTFKTPVLAIIETMGIGWELKIPISTYEKLPTAGKPCKLLTYLHISQDDIRI 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R+ F++L  V G+G ++A+ +LS ++    ++++      ++ ++PGI  K 
Sbjct: 64  FGFATEAERELFVMLNKVGGIGPKIALSILSTLSIPTFIKAVNSGEEGLLTRVPGIGKKS 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK         V + ++ +++++  I  + S      SAL++LG+   Q    
Sbjct: 124 AQRLIVELKDD-------VHKLLNHIDQKELQIGDVSS---EVESALLSLGFNLHQ---- 169

Query: 181 VVSVLKKEKNIADDS 195
               ++KE  + D+S
Sbjct: 170 ----IRKELALMDES 180


>gi|288803240|ref|ZP_06408674.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18]
 gi|288334281|gb|EFC72722.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18]
          Length = 205

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 25/217 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  I+G +  L     +++  GV Y +   + T S + GK      L+V     T  R 
Sbjct: 1   MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAIQGKTA--VKLYVHEAIMTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + G
Sbjct: 59  DNYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-------NAISALV 168
           I ++ A RI+ +LK K      ++Q  ++    ++ H+ S P+           A+SAL 
Sbjct: 119 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPNTPTVNTAIKDEAVSALT 168

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            LG+    +   VVS+L ++ ++  + Q+++LAL+ I
Sbjct: 169 MLGFSPAPSAKVVVSILAEQPDLPVE-QVVKLALKMI 204


>gi|194439064|ref|ZP_03071147.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1]
 gi|253773182|ref|YP_003036013.1| Holliday junction DNA helicase RuvA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161921|ref|YP_003045029.1| Holliday junction DNA helicase RuvA [Escherichia coli B str.
           REL606]
 gi|300928892|ref|ZP_07144397.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1]
 gi|194422023|gb|EDX38027.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1]
 gi|242377582|emb|CAQ32337.1| branch migration of Holliday structures; repair, subunit of
           resolvasome [Escherichia coli BL21(DE3)]
 gi|253324226|gb|ACT28828.1| Holliday junction DNA helicase RuvA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973822|gb|ACT39493.1| Holliday junction DNA helicase motor protein [Escherichia coli B
           str. REL606]
 gi|253978016|gb|ACT43686.1| Holliday junction DNA helicase motor protein [Escherichia coli
           BL21(DE3)]
 gi|300463120|gb|EFK26613.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1]
 gi|323961916|gb|EGB57515.1| Holliday junction DNA helicase RuvA [Escherichia coli H489]
 gi|323972631|gb|EGB67834.1| Holliday junction DNA helicase RuvA [Escherichia coli TA007]
          Length = 203

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 13/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y +  P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E+K +   L      D+     +   + S  S A N     A++ALV LGY   
Sbjct: 121 AERLIVEMKDRFKGLHG----DLFTPAADLV-LTSPASPATNDAEQEAVAALVALGYKPQ 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A+  V  + + +   A    +IR ALRA
Sbjct: 176 EASRMVSKIARPD---ASSETLIREALRA 201


>gi|163751784|ref|ZP_02159001.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99]
 gi|161328348|gb|EDP99508.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99]
          Length = 205

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 100/190 (52%), Gaps = 6/190 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGVLLEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +T+ E V  +   +   + ++PG+  K 
Sbjct: 61  YGFMTKQERALFRLLIKTNGVGPKLALTILSGMTSVEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL----SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E++ K  SL    +   ++ M   N   A I +  +   +AI+AL+ LGY   Q
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYRPAKIVN--TAEDDAIAALLALGYKPAQ 178

Query: 177 ATTAVVSVLK 186
           A+ +V +  K
Sbjct: 179 ASKSVSAAYK 188


>gi|89899549|ref|YP_522020.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118]
 gi|123091484|sp|Q220R4|RUVA_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89344286|gb|ABD68489.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118]
          Length = 190

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++      V++D  GV Y +  P+ T   L ++G   +L     +R+D   L
Sbjct: 1   MIGKLSGTLDDKNPPQVIVDCHGVGYEVLVPMSTFYNLPELGARVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG R A+ VLS ++  EL +++ LQ    + ++PGI  K 
Sbjct: 61  YGFATSQERAAFRELIKISGVGPRTALSVLSGMSVAELAQAVTLQEGGRLIKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK      V     S  N  QA I          + AL+ LGY  D+   A
Sbjct: 121 AERLLLELKGKLGPDIGVA---ASVANDSQADI----------LQALLALGY-SDKEAAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +  L  +  +   S+ IRLALRA+
Sbjct: 167 ALKALPSDVGV---SEGIRLALRAL 188


>gi|303238091|ref|ZP_07324631.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN]
 gi|302481726|gb|EFL44781.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN]
          Length = 205

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 25/217 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHM----RQ 55
           MI  IKG +  L     ++D  GV Y +   + T   + GK      LFV   +    R 
Sbjct: 1   MIEYIKGELAELTPALAVVDANGVGYGLNISLNTYGVIQGK--KSVKLFVHEAISMGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + G
Sbjct: 59  DSYTLYGFANKQERGLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKAVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-IN------AISALV 168
           I +K A RI+ +LK K      +VQ  ++    E+ H+ S P+ A +N      A+ AL 
Sbjct: 119 IGLKTAQRIIVDLKDK------IVQSGIA----EELHVSSQPNAANVNNAVKDEAVGALT 168

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            LG+    +   VV +L ++ ++  + Q+++LAL+ I
Sbjct: 169 MLGFSPAPSAKVVVDILTEQPDLPVE-QVVKLALKQI 204


>gi|228473784|ref|ZP_04058529.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274805|gb|EEK13628.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC
           33624]
          Length = 196

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 17/209 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      Y++ID  GV Y +   + T S L        ++    +++D   L
Sbjct: 1   MITHLQGRLVEKTPTYLVIDCNGVGYWVNISLHTFSQLSDTQQL-KIYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV GVGA  A  +LS ++  +L  +I+  + + I  + GI  K 
Sbjct: 60  FGFFDKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNSDVRTIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A RI+ +LK K + L+    S+V    S  NKE+            A++AL  LGY +  
Sbjct: 120 AQRIILDLKEKMVKLTGDNASLVAASQSPSNKEE------------ALAALEVLGYPRKA 167

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   V  +L +        Q+I+ AL+ +
Sbjct: 168 AEAVVNKILTQSGQEFSVEQLIKQALKQL 196


>gi|297584758|ref|YP_003700538.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens
           MLS10]
 gi|297143215|gb|ADH99972.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens
           MLS10]
          Length = 208

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 15/213 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           MI +I+G +  +  + + +DV GV Y+I+C  P R    +    +  T+F   H+R+D I
Sbjct: 1   MIEQIRGTLLYIETETITVDVHGVGYLIHCGNPYRFQEWMN---EELTVFTYQHVREDAI 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           RL+GF    +R+ F  +  V G+G + A+ + +     ++V +I  ++ K + + PG+  
Sbjct: 58  RLYGFRFREERKLFEKMLQVSGIGPKGALAIATSGHPGKVVAAIESEDEKFLVKFPGVGK 117

Query: 119 KIASRIMTELKGKAISL------SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           K A +++ +LKGK   L       +  Q+ ++ V  E+  +   P     A+ AL  LGY
Sbjct: 118 KTARQMILDLKGKLGELLPDLNDHNEGQKPVNAVMNEREPVSDNPELD-EALEALKALGY 176

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             D+    +  VL  E    D    IR AL+ +
Sbjct: 177 -VDRELQKIKPVLSGESMTTD--AYIRRALQEL 206


>gi|88602182|ref|YP_502360.1| Holliday junction DNA helicase RuvA [Methanospirillum hungatei
           JF-1]
 gi|88187644|gb|ABD40641.1| Holliday junction DNA helicase subunit RuvA [Methanospirillum
           hungatei JF-1]
          Length = 195

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 107/203 (52%), Gaps = 15/203 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G + G     V+++  G+ Y I  P   L+ + K  D   L+ E  +RQD ++L
Sbjct: 1   MIARIRGLVIGYETGSVIVEAGGIGYRIRVPESVLTSITK-DDEIILYTELIIRQDLMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL SV  +G +  + ++SR++  E+ ++I  +  ++++Q+ G+  K 
Sbjct: 60  YGFYTPEETEMFRLLISVSHIGPQTGLAIISRLSLPEICDAISSKKPEILSQVQGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K   L     Q  +   K Q           +A+ AL++LGY +++A  A
Sbjct: 120 AERIILELQKKVSELKIQYPQTPTSSTKIQ-----------DAVLALLSLGYSREEAMGA 168

Query: 181 VV-SVLKKEKNIADDSQIIRLAL 202
           +  S L  E      S+++R AL
Sbjct: 169 LERSALDTE--TVSSSELVREAL 189


>gi|304407532|ref|ZP_07389184.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus
           YK9]
 gi|304343483|gb|EFM09325.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus
           YK9]
          Length = 210

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 14/180 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     +Y+++DV+ V Y ++ P        +  +  T+++  H+R+D I+L
Sbjct: 1   MIDFLKGPVAHWETEYIVLDVRDVGYRVFTP--NPYGFARSNEPVTVYIHHHVREDAIQL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F  L  V G+G RVA+GVL+      +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFATREEQTMFRKLLDVSGIGPRVALGVLAGSRPEAIVAAIQQENVTFLTKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK--------EQAHICSMPSFAINAISALVNLGY 172
           A R++ +LK K  +       D S  +         EQA   + P     A  AL  LGY
Sbjct: 119 AQRMILDLKDKLGNAPLAFGADPSVWDTNEGKGTTGEQAIAGAWP----EAREALGALGY 174


>gi|94677012|ref|YP_588762.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|123081488|sp|Q1LTF2|RUVA_BAUCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94220162|gb|ABF14321.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 196

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       +L+++ G+ Y I  P+   S L  IG    L+    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLLLLEINGIGYEIAIPMNNFSLLPAIGQETILYTHCIVREDTELL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   D   F  L  + GVG ++A+ +L+ ++  + + +I      ++ ++PG+  K 
Sbjct: 61  FGFIKKPDMILFRALIKINGVGPKLALAILAGMSEKQFLSAIEHNEIHMLTKLPGVGKKT 120

Query: 121 ASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E    LKG + SL S+          E           I AI+AL++LGY   +
Sbjct: 121 AERLVIEMKDKLKGTSKSLFSLATIGEGLAKTE-----------IEAITALISLGYTHQE 169

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           A+  V  V  +  N      +IR ALR
Sbjct: 170 ASKMVKKVAIEGANC---ETLIRDALR 193


>gi|74311809|ref|YP_310228.1| Holliday junction DNA helicase RuvA [Shigella sonnei Ss046]
 gi|90135833|sp|Q3Z2L9|RUVA_SHISS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|73855286|gb|AAZ87993.1| Holliday junction helicase subunit B [Shigella sonnei Ss046]
          Length = 203

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARTD---ASSETLIREALRA 201


>gi|256545112|ref|ZP_05472478.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC
           51170]
 gi|256399153|gb|EEU12764.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC
           51170]
          Length = 199

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 5/186 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ + ED  +I+   + Y I     T+  L +I +   +F + ++R+D I L
Sbjct: 1   MISYIIGEIKYIGEDNFVIENNNIGYFINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F LL SV  +G + A+ +LS +   ++  +I+  +   + +  GI  K 
Sbjct: 60  FGFSSKDELEVFELLTSVSTIGPKNAIAILSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++  +  D+S  N++  +I S     + A  AL+NLGY Q  +   
Sbjct: 120 ASRIILELVDKVKKMA--INDDISISNQDFDNITSNGEIEV-AREALLNLGY-QRNSIDK 175

Query: 181 VVSVLK 186
           V+S LK
Sbjct: 176 VLSSLK 181


>gi|297155806|gb|ADI05518.1| Holliday junction DNA helicase RuvA [Streptomyces bingchenggensis
           BCW-1]
          Length = 204

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 17/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I  +  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPIAAVGPDIAVVEVGGVGMAVQCTPNTLSGL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQIFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKSLTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +              V +        P ++    +ALV LGY   +A  A
Sbjct: 120 AQRLLLELKDRL----------GEPVGRPAGPAAPAPGWSDQLHTALVGLGYAPREAEDA 169

Query: 181 VVSVLKK-EKNIADD-----SQIIRLALRAIS 206
           V +V  + E  +A       +Q++R AL+ ++
Sbjct: 170 VAAVTPQAEAAVAAGGSPQVAQLLRAALQTLN 201


>gi|295132466|ref|YP_003583142.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia
           profunda SM-A87]
 gi|294980481|gb|ADF50946.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia
           profunda SM-A87]
          Length = 193

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  +KG +      YV++D  GV Y ++  + T S   KI D   + + TH+  ++D  
Sbjct: 1   MIHHLKGKLVEKNPTYVVVDCNGVGYFVHISLNTFS---KIKDEEQIAIFTHLQVKEDSH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF    +R+ F LL SV G+GA  A  +LS +  T++ ++I   +   I  I GI  
Sbjct: 58  TLFGFQEKSEREIFRLLISVSGIGASTARTMLSSLDPTQIRDAIASGDVATIQSIKGIGA 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ +LK K + +  +          ++  +    +    A+SAL  LGY + QA 
Sbjct: 118 KTAQRVILDLKDKIVKIFGI----------DEVFVEQSNTIKEEALSALETLGYARKQA- 166

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
             V++ L KE        +I+LAL+
Sbjct: 167 DKVLNKLIKEIEDPTVETLIKLALK 191


>gi|156973890|ref|YP_001444797.1| Holliday junction DNA helicase motor protein [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525484|gb|ABU70570.1| hypothetical protein VIBHAR_01600 [Vibrio harveyi ATCC BAA-1116]
          Length = 223

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 20  VIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 79

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 80  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 139

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A   S  + + N    AISAL+ LGY   Q
Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQ 196

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K +       Q+IR AL+++
Sbjct: 197 ASKVVSQIAKPDMT---SEQLIRKALKSM 222


>gi|153832528|ref|ZP_01985195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01]
 gi|148871323|gb|EDL70195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01]
          Length = 223

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 20  VIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 79

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 80  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 139

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A   S  + + N    AISAL+ LGY   Q
Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQ 196

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K +       Q+IR AL+++
Sbjct: 197 ASKVVSQIAKPDMT---SEQLIREALKSM 222


>gi|332968271|gb|EGK07345.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella kingae
           ATCC 23330]
          Length = 188

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 12/187 (6%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           ++IDV GV Y +   ++T   L  +G+   L+    +R+D   LFGF    +R  F  L 
Sbjct: 10  IVIDVNGVGYELDVSMQTFYALPALGETVQLYTYLVVREDAHLLFGFGDASERTTFRQLI 69

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            V G+GA+ A+G+LS +T  EL ++I  ++ K ++  PGI  K A R++ EL+GK   L+
Sbjct: 70  KVSGIGAKTALGILSAMTTDELAQAIANEDVKRLSSAPGIGKKTAERMILELRGK---LA 126

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
                D++          +      + +S L+ LGY + +A  A  S+     N  +  +
Sbjct: 127 HRGLGDLALFTP-----AADTDNRADVVSTLLALGYSEREAQAACKSL----PNGVEVGE 177

Query: 197 IIRLALR 203
            +RLAL+
Sbjct: 178 GVRLALK 184


>gi|226945719|ref|YP_002800792.1| Holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ]
 gi|226720646|gb|ACO79817.1| holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ]
          Length = 204

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 113/206 (54%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +      ++L++  GV Y +  P+ TL  L  + +  TL     +R+D   L
Sbjct: 4   LIGRLRGILVEKQPPHLLVEANGVGYEVEVPMTTLYRLPSLNEPVTLHTHLVVREDAHLL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +   + K + ++PG+  K 
Sbjct: 64  YGFCERRERELFRELIRLNGVGPKLALALMSSLELDELVRCVQAGDIKALTRVPGVGKKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S+    ++ +  E      + S   +A+SALV LG+   +A+ A
Sbjct: 124 AERLLIELKDRFKAWESL--PTVASLTLESNPDIGIASAESDALSALVALGFKPQEASRA 181

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V  +E+ ++ + ++IR ALR ++
Sbjct: 182 VAAV--QEEGLSSE-ELIRRALRGMA 204


>gi|325268803|ref|ZP_08135428.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           multiformis DSM 16608]
 gi|324988775|gb|EGC20733.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           multiformis DSM 16608]
          Length = 246

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 25/217 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  I+G +  L     +++  GV Y +   + T S L GK      L+V     T  R 
Sbjct: 42  MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSALQGKTT--VKLYVHEAIMTGGRD 99

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF S  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + G
Sbjct: 100 DSYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKG 159

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168
           I ++ A RI+ +LK K      ++Q  ++    ++ H+ S P + A++      A+SAL 
Sbjct: 160 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPGTPAVDTAIKDEAVSALT 209

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            LG+    +   VVS+L  + ++  + Q+++LAL+ I
Sbjct: 210 MLGFSPAPSAKVVVSILTDQPDLPVE-QVVKLALKMI 245


>gi|154249486|ref|YP_001410311.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum
           Rt17-B1]
 gi|171769439|sp|A7HL71|RUVA_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154153422|gb|ABS60654.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum
           Rt17-B1]
          Length = 188

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 20/203 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G  +G  E  +L+ + GV + I     + S   + GD   ++ +  + Q+ + +
Sbjct: 1   MIEIIEGIYKGRSEGKILVSINGVVFGIITDAESFSEFNE-GDKILVYTKLIVSQEDMTI 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S + ++ F  L  V  +G + A+ +LS  T   L  +I   + + ++ IPGI  K 
Sbjct: 60  YGFDSKVKKETFEKLIKVSKLGPKTAIKILSSTTVDFLSNAIATGDVEKLSSIPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TEL                   K++  +  +    + AI ALV+LGY + QA  A
Sbjct: 120 AERMITEL-------------------KDEFEVVEVNEEMLEAIEALVSLGYSKTQARNA 160

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  VLK+  NI++ S+II+ AL+
Sbjct: 161 VSKVLKESPNISNVSKIIKEALK 183


>gi|218888287|ref|YP_002437608.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|226725439|sp|B8DNJ8|RUVA_DESVM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218759241|gb|ACL10140.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 202

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 7/175 (4%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++   GV Y ++ P  TLS L + G      V T +R+D + LFGF +  +RQ FM+L 
Sbjct: 18  VVVTEGGVGYEVHLPAHTLSRLPERGGQVAFHVRTEVREDALELFGFSTWDERQTFMVLT 77

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           ++  VGAR A+ +LS+    +L   ++  +   + ++ GI  K A  I  ELK K     
Sbjct: 78  TISKVGARTALAILSQFRPDDLRRLVVEDDVLALTRVSGIGKKTAQHIFLELKYK----- 132

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
            +  +D+               F  +A++ L NLGY +D+A   +  VLK E ++
Sbjct: 133 -LKVEDLPAGLVLAGGAAPGGVFR-DALAGLGNLGYLEDEAAPVLKEVLKAEPDL 185


>gi|317500339|ref|ZP_07958564.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898280|gb|EFV20326.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 184

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 21/170 (12%)

Query: 23  GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82
           G+ Y ++ P + L+ L  +G+   L+   ++R+D ++LFGFL+  D + F L+  V G+G
Sbjct: 3   GIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQLFGFLTKDDLEIFRLVIGVSGIG 62

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK---------AI 133
            +  + +LS ++  EL  +I+  ++K+I+  PGI  K A +++ EL+ K         A 
Sbjct: 63  PKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKTAEKLIVELRDKVDIEKMLDHAA 122

Query: 134 SLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
                +Q DM  +  N+ Q+           A+ ALV LGYG  ++  AV
Sbjct: 123 HPEETIQTDMAKTSANEMQSE----------AVQALVALGYGSAESLRAV 162


>gi|153875446|ref|ZP_02003246.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp.
           PS]
 gi|152068090|gb|EDN66754.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp.
           PS]
          Length = 203

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 98/187 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       +++DVQGV Y ++ P+ T   L +I    +L     +R+D   L
Sbjct: 1   MISRLRGLLIEKQPPLLVVDVQGVGYEVFAPMSTFYNLPEINAEISLLTHLSIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F  L  V G+G ++A+ +LS +  +  V+ +   ++  + +IPG+  K+
Sbjct: 61  YGFLNESERGLFRDLIRVSGIGPKLALSILSSMELSMFVQCVNNNDTARLIRIPGVGKKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +  + ++      S           + +   +AISAL+ LGY    AT  
Sbjct: 121 AERLVVEMRDRLKNWNTTNNTAPSPTTTSSTLTLGIATPIEDAISALIALGYKPQDATRW 180

Query: 181 VVSVLKK 187
           V +V ++
Sbjct: 181 VQAVAEE 187


>gi|88607371|ref|YP_504791.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ]
 gi|123722839|sp|Q2GLG0|RUVA_ANAPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|88598434|gb|ABD43904.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ]
          Length = 191

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 116/209 (55%), Gaps = 22/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58
           MIG + G IE + +  +++ V GV YI++   RTL +C  K GD   L++ET++ +D + 
Sbjct: 1   MIGTLSGIIEEVQDTSIILAVGGVGYIVHVSYRTLINC--KRGDSIKLYIETYVNRDNVP 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF    ++    +L  V G+  R A+ +L R+T  +L  +I+ ++ K   ++ G+  
Sbjct: 59  QLYGFTDTEEQNCLKMLIKVSGINYRTALAILDRLTPDQLFSAIVNED-KAALKVGGVGA 117

Query: 119 KIASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           K+ +RI TE       L+ +VQ+ + + ++K    +        +A+SAL++LGY +   
Sbjct: 118 KLINRIFTE-------LTPLVQKLEFNIMDKRGPSVEDS-----DALSALLSLGYEK--- 162

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            T V++ L+K     + S  +R AL+ +S
Sbjct: 163 -TRVLNALEKVGVSHNLSDTVRFALKELS 190


>gi|260578827|ref|ZP_05846734.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC
           43734]
 gi|258603125|gb|EEW16395.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC
           43734]
          Length = 211

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 15/215 (6%)

Query: 1   MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQD 56
           MI  ++G +  +GL  DYV I+  GV Y       T++ L + G+   +FV T +  R+D
Sbjct: 1   MIASLRGTVIDKGL--DYVTIECAGVGYQCSGTATTIAELPR-GE--EVFVTTALVVRED 55

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+ F    +++ F  LQSV GVGAR+A+ +LS IT  EL  ++   + K + + PG+
Sbjct: 56  SQTLYVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQKAPGV 115

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM----PSFAINAISALVNLGY 172
             ++A R+  +LKGK   L  +                      P      + ALV LG+
Sbjct: 116 GKRLAERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGF 175

Query: 173 GQDQATTAVVSVLKK--EKNIADDSQIIRLALRAI 205
            + +A T + +VL +       D S ++R +L AI
Sbjct: 176 TESKAGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210


>gi|331000258|ref|ZP_08323942.1| Holliday junction DNA helicase RuvA [Parasutterella
           excrementihominis YIT 11859]
 gi|329572424|gb|EGG54077.1| Holliday junction DNA helicase RuvA [Parasutterella
           excrementihominis YIT 11859]
          Length = 189

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 24/208 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  I+G I       V+I+  G+ Y I  P+ T   L  IG+   +F+ET M  R+D  
Sbjct: 1   MIATIRGKILQKNPPQVVIECGGLGYEIDVPMSTFYNLPNIGE--EVFLETVMIVREDAQ 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFL+  ++  F  L  V G+G R+++ +LS ++A ++  +I      ++  +PGI  
Sbjct: 59  LLYGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ ELK K +  S+     +S V  E              I ALV LG+ + +A 
Sbjct: 119 KTAERLVLELKDKMVVTSA---PTVSSVQTE-------------VIQALVALGFSEREAR 162

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A  +V       AD S+ IRL LR ++
Sbjct: 163 GAAKNVPAD----ADASEGIRLCLRQLA 186


>gi|256831252|ref|YP_003159980.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM
           4028]
 gi|256580428|gb|ACU91564.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM
           4028]
          Length = 198

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 12/204 (5%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +    E+  VL+   GV Y ++     L+ L   GD   LFV T +R+D + 
Sbjct: 1   MIAYLEGTVLRRDEESCVLLTAGGVGYQLHLTSDGLAALPGAGDTARLFVHTLVREDALT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LF F S  +RQ F+ L     +G + A+ +L   +  EL   I  ++   ++++PGI  K
Sbjct: 61  LFAFSSWEERQAFVTLLGAPKLGPKTALAMLGCYSPAELAACIAKEDVAALSRVPGIGAK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ +LK K +S  S++                 P+ + +  +ALV+LGYG+ +   
Sbjct: 121 TAKRLLLDLKDKLVSSPSLL----------PGRTAPAPTASADCAAALVSLGYGRHEVDE 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V  V +KE ++ D    IR AL+
Sbjct: 171 VVRVVFEKEPDL-DAGSAIRQALK 193


>gi|68536132|ref|YP_250837.1| holliday junction DNA helicase [Corynebacterium jeikeium K411]
 gi|90134845|sp|Q4JVD8|RUVA_CORJK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68263731|emb|CAI37219.1| holliday junction DNA helicase [Corynebacterium jeikeium K411]
          Length = 211

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 15/215 (6%)

Query: 1   MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQD 56
           MI  ++G +  +GL  DYV I+  GV Y       T++ L + G+   +FV T +  R+D
Sbjct: 1   MIASLRGTVIDKGL--DYVTIECAGVGYQCSGTATTIAELPR-GE--EVFVTTALVVRED 55

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+ F    +++ F  LQSV GVGAR+A+ +LS IT  EL  ++   + K + + PG+
Sbjct: 56  SQTLYVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQRAPGV 115

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM----PSFAINAISALVNLGY 172
             ++A R+  +LKGK   L  +                      P      + ALV LG+
Sbjct: 116 GKRLAERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGF 175

Query: 173 GQDQATTAVVSVLKK--EKNIADDSQIIRLALRAI 205
            + +A T + +VL +       D S ++R +L AI
Sbjct: 176 TESKAGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210


>gi|51892298|ref|YP_074989.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum
           IAM 14863]
 gi|81389173|sp|Q67Q98|RUVA_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|51855987|dbj|BAD40145.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum
           IAM 14863]
          Length = 205

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+V+IDV GV Y    P  T S L   G    L+    +R+D + L
Sbjct: 1   MIAHLRGELVTAGADWVVIDVAGVGYRCLVPASTRSRLPAQGAAVQLYTYLQVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL  V GVG +VA+ VLS         ++  ++   I ++PGI  K 
Sbjct: 61  YGFLTQAEYDLFELLLRVDGVGPKVALAVLSTTDPAAFRRAVAFEDLDAICRVPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   + +V        +     +         A  AL+ LGY + +A  A
Sbjct: 121 AQRLVLELKDK---IGAVPAGGGGVPDGLPVAVAPAGDAWAEASEALIALGYSRGEAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V  +         ++RLAL+
Sbjct: 178 LARVRAEAGEAPSVETLVRLALK 200


>gi|269963130|ref|ZP_06177465.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3]
 gi|269832094|gb|EEZ86218.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3]
          Length = 223

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 20  VIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 79

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 80  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 139

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A   S  + + N    AISAL+ LGY   Q
Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPADSGSAGSNNAEEEAISALLALGYKPTQ 196

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K +       Q+IR AL+++
Sbjct: 197 ASKVVSQIAKPDMT---SEQLIREALKSM 222


>gi|302541121|ref|ZP_07293463.1| Holliday junction DNA helicase RuvA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458739|gb|EFL21832.1| Holliday junction DNA helicase RuvA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 206

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 23/216 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  +  +I+V GV   + C   TLS L +IG+   L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPNTAVIEVGGVGMALQCTPGTLSGL-RIGEAARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHAPDALRLAVSTGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A +++ ELK   G+ +  +    +  +     +Q H            +ALV LGY   +
Sbjct: 120 AQKLLLELKDRLGEPVGTTVPAARPPAAAGWSDQLH------------TALVGLGYATRE 167

Query: 177 ATTAVVSVLKK------EKNIADDSQIIRLALRAIS 206
           A  AV +V  +      E  +   +Q++R AL+ ++
Sbjct: 168 ADEAVSAVTPQAEAALAEGGMPQVAQLLRAALQTLN 203


>gi|23099492|ref|NP_692958.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|33301656|sp|Q8EPQ5|RUVA_OCEIH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|22777721|dbj|BAC13993.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 201

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  L ++ +++DV G+ Y I CP         +     +    H+R+D   L
Sbjct: 1   MIAYIKGTLNSLGDESLIVDVGGIGYEIVCP-NPFVFQDLLNQQIHIQTYHHVREDAQIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F  L SV G+G + A+ +L+ +  +  + ++  ++ K +   PG+  K 
Sbjct: 60  FGFQNRDEKYLFTKLISVSGIGPKGALAILAGVDISGFIAAVENEDDKFLTSFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +I+ +LKGK  S+ S+   QQ  S  N     + S       A+ AL  LGY  D+  
Sbjct: 120 ARQIILDLKGKLTSVFSITDEQQKSSVSNVNNNEVYS------EAMEALKALGY-TDKEV 172

Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202
             V+  LKK+ +     + IR AL
Sbjct: 173 KQVLPHLKKDNDALSVDEAIRKAL 196


>gi|229543702|ref|ZP_04432762.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1]
 gi|229328122|gb|EEN93797.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1]
          Length = 200

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I+ +  DY++++  G+ Y +  P   +     IG    +F   H+R+D I L
Sbjct: 1   MYEYIKGIIDSVSPDYIVVENGGIGYRLLAPNPYIFS-KSIGQERKIFTYQHVREDLIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G + A+ +L+     ++V++I  +N   + + PG+  K 
Sbjct: 60  YGFETAEERALFQKLLNVSGIGPKGALAILAYGQPQQVVDAIENENESFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L  +V +       E+A   S       A+ AL  LGY + +    
Sbjct: 120 ARQMILDLKGK---LQGLVPEMPDEAGVEKAVPASTNQNLEEAMLALAALGYSEKE-IAK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           VV  L +E   AD  + I+LAL+A+
Sbjct: 176 VVPELPEEVLSAD--EYIKLALKAM 198


>gi|312892324|ref|ZP_07751819.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter
           paludis DSM 18603]
 gi|311295108|gb|EFQ72282.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter
           paludis DSM 18603]
          Length = 194

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 15/190 (7%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YV+ID  GV Y I   + T S +    + C LF   H+++D   L+GF  + +R+ F+ L
Sbjct: 16  YVIIDAGGVGYHINISLNTYSNISD-KESCKLFTWLHVKEDAHTLYGFADEGERRLFLHL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV G+GA     +LS IT  E+  +II  +  +I +I GI  K A RI+ EL+ K    
Sbjct: 75  ISVSGIGANTGRMILSSITPAEIQNAIIKGDVPLIQRIKGIGPKSAQRIVLELQDK---- 130

Query: 136 SSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
              +++D   + +N    H          A+SALV LG+ ++    A+ + +K   +   
Sbjct: 131 ---LRKDGPDTLINVPVIHTAKD-----EALSALVMLGFAKNVGEKALDNAIKSTTDNLT 182

Query: 194 DSQIIRLALR 203
             Q+I++AL+
Sbjct: 183 VEQLIKIALK 192


>gi|308235709|ref|ZP_07666446.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis ATCC 14018]
 gi|311114741|ref|YP_003985962.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella
           vaginalis ATCC 14019]
 gi|310946235|gb|ADP38939.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella
           vaginalis ATCC 14019]
          Length = 212

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 9/211 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G IE +     LI V GV Y +Y P   L+ L + G    ++    + QD + L
Sbjct: 1   MIGMLNGVIESVDSRCALICVSGVGYEVYMPSSDLAALHE-GQDVKVYTSLQVSQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S   ++ F+ +Q  V GVG +VA+ +LS +    L+++I   +   ++  PG+  K
Sbjct: 60  YGFTSMPAKRIFLQIQQKVSGVGPKVALSLLSTLNVNRLLQAIADGDITALSSAPGLGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ ELKG +I +S + + D S  +K           +   +  L++LG+ Q  A  
Sbjct: 120 GAQKIVLELKG-SIDVSQLNEDDTSKDSKSYKKEFDESGIS-KVVDGLMSLGWKQSDAQR 177

Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205
           AV +V   EK     + +D   ++R+AL A+
Sbjct: 178 AVENVCNSEKIALPISDSDMPNVLRMALAAL 208


>gi|220912786|ref|YP_002488095.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus
           A6]
 gi|254766940|sp|B8H9D7|RUVA_ARTCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219859664|gb|ACL40006.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus
           A6]
          Length = 213

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +ID+ G    +Y   +TLS L  +G+   +F    +R+D + L
Sbjct: 1   MISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSRL-HVGEEGKVFTSLIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R+ F +L SV GVG R+A+ VL+      +  +    ++K   ++PGI  K+
Sbjct: 60  FGFADDDEREVFEVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDNKTFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +   +      +             S+    ++A+ +LG+ +  A+ +
Sbjct: 120 AGRIVLELAGKLVPHGTAPAAATTAAEA---------SWKPQVVAAMTSLGWSEKDASAS 170

Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203
           +   L  E  ++   +  +I+R  LR
Sbjct: 171 IDKALADEPEVSFRGNVPEILRTTLR 196


>gi|257455268|ref|ZP_05620503.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60]
 gi|257447230|gb|EEV22238.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60]
          Length = 206

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 2/132 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +  L    V++    GV Y I  P+    C  ++    TL+    +R+D   
Sbjct: 1   MIGLIQGQVHHLMAPTVVVMTTAGVGYEIEMPLNAF-CQVQLNQSVTLWTHFLVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFLS  DR+ F LL  V GVGA++A+ ++S +T  EL + ++  +   + +IPG+  K
Sbjct: 60  LFGFLSHSDREVFRLLLKVNGVGAKMALAMMSTVTVQELHQFVMNNDELALTRIPGVGKK 119

Query: 120 IASRIMTELKGK 131
            A R++ ELK K
Sbjct: 120 TAQRLIVELKDK 131


>gi|239932397|ref|ZP_04689350.1| Holliday junction DNA helicase RuvA [Streptomyces ghanaensis ATCC
           14672]
 gi|291440764|ref|ZP_06580154.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291343659|gb|EFE70615.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 201

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RVGRPAKLHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGK 131
           A +++ ELK +
Sbjct: 120 AQKLLLELKDR 130


>gi|91227614|ref|ZP_01261918.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           12G01]
 gi|91188507|gb|EAS74800.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           12G01]
          Length = 203

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 25/216 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TAT+ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           A R++ E+K +             + ++      +  N E+            AISAL+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEE-----------EAISALLA 169

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           LGY   QA+  V  + K + +     Q+IR AL+++
Sbjct: 170 LGYKPTQASKVVSQIAKPDMS---SEQMIREALKSM 202


>gi|260060653|ref|YP_003193733.1| Holliday junction DNA helicase RuvA [Robiginitalea biformata
           HTCC2501]
 gi|88784783|gb|EAR15952.1| Holliday junction DNA helicase motor protein [Robiginitalea
           biformata HTCC2501]
          Length = 193

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 19/194 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  + G +   +  +++I+  GV Y +   + T S L    D   L + TH+  R+D  
Sbjct: 1   MIEHLTGRLIEKHPTHLVIECAGVGYFVNISLNTFSALP---DEEQLRIYTHLQVREDAH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF S  +R+ F LL SV GVGA  A  +LS +T  +L E+I   +   I  + GI  
Sbjct: 58  TLFGFYSVAEREAFRLLISVSGVGASTARTMLSSMTPAQLREAIASGDVPAIQAVKGIGA 117

Query: 119 KIASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           K A R++ +L+ K + +  +  V       NKE+            A+SAL  LGY + Q
Sbjct: 118 KTAQRVILDLRDKILKIYDLDEVSLKPDNTNKEE------------ALSALEVLGYSRKQ 165

Query: 177 ATTAVVSVLKKEKN 190
           +  AV +VL+++ +
Sbjct: 166 SEKAVDTVLRQDPS 179


>gi|121998991|ref|YP_001003778.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1]
 gi|166230558|sp|A1WZ64|RUVA_HALHL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121590396|gb|ABM62976.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1]
          Length = 204

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       ++++  G+ Y +  P+ T+  L + G    L     +R+D   L
Sbjct: 1   MIARLRGTLLEKRPPTLVVEANGLGYEVEAPLSTIEALPETGREVILHTHLSVREDGQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++ + +LS +   ELV  +   + K + Q+PGI  K 
Sbjct: 61  FGFRTRAERDLFRRLIRVSGVGPKLGLALLSGVDGEELVRCVRDDDPKRLTQVPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   L  V     +       H          AI  LV LGY   +A   
Sbjct: 121 AERLIVELRDR---LDGVGGGSTAAPAAGADHPTGENDPVSEAIEGLVALGYKPPEAARM 177

Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206
             +  + E        IIR AL RA+ 
Sbjct: 178 ARNAAEPELGC---EAIIRRALQRAVP 201


>gi|260910076|ref|ZP_05916757.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260635788|gb|EEX53797.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 205

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  IKG++  L     +I+  GV Y +   + T S + GK  D   LFV     T  R 
Sbjct: 1   MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYSAIQGK--DKLKLFVHEALVTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF +  +R+ + LL SV GVGA  A  +LS ++ +EL   I   + K++  + G
Sbjct: 59  DSYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPSELCNVIAAGDDKMLKTVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I  K A RI+ +LK K   ++S V Q++S V           +    A+ AL  LG+   
Sbjct: 119 IGAKTAQRIIVDLKDKI--MTSGVAQELS-VPTNANANAMNAAVKDEAVGALTMLGFAPA 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +   VV +LK++ ++  + Q+++ AL+ I
Sbjct: 176 TSAKVVVEILKEQPDLPVE-QVVKAALKMI 204


>gi|256825358|ref|YP_003149318.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius
           DSM 20547]
 gi|256688751|gb|ACV06553.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius
           DSM 20547]
          Length = 209

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I  +  D+++++V GV   +  P +  + + + G    L     +R+D + L
Sbjct: 1   MIASLSGTITHVGLDHLVVEVGGVGMRVLVPPQVAAEV-RTGQEARLETSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    R+ F  +QSV GVG R+A+ +++ ++  EL  ++  ++   +  +PGI  K 
Sbjct: 60  FGFLDADTREVFETVQSVSGVGPRLALALVAVLSPAELSRAVHTEDLAALTSVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ EL GK   L + +    +    EQ+     S P++A     AL  LG+   QAT
Sbjct: 120 AQRLVLELVGK---LPADLGGGAAPTTTEQSAGGDPSEPAWAPQVRDALEGLGWNTAQAT 176

Query: 179 TAVVSVLKKEKNIADDSQ----IIRLALR 203
            A  +V+++             ++R ALR
Sbjct: 177 KATRTVVEQHAQDTGPPPELPVLLREALR 205


>gi|226311452|ref|YP_002771346.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
 gi|254766947|sp|C0ZAN3|RUVA_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226094400|dbj|BAH42842.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
          Length = 205

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 17/198 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  +Y++I+  G+ Y ++CP      +   G+   LF   H+R+D I L
Sbjct: 1   MIDFVEGTLSYLDSEYIVIETGGIGYRLFCP-NPYQFVRYEGNKTKLFTHHHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+  T  +LV ++  +N   + + PGI  K 
Sbjct: 60  YGFATRDERDLFRKLLDVSGIGPKGGLAILAAATPEQLVMAVQQENVTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLS-----SVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGY-- 172
           A RI+ +LK K +  +     +V   D++    EQA        A+N A+ AL  LGY  
Sbjct: 120 AQRIILDLKDKLVGYTPSAILTVAAGDLTA--GEQA------VSALNEALDALTALGYSD 171

Query: 173 GQDQATTAVVSVLKKEKN 190
           G+ Q     +S   KE +
Sbjct: 172 GELQKIRNTLSEKSKEGD 189


>gi|27365489|ref|NP_761017.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6]
 gi|161486619|ref|NP_935078.2| Holliday junction DNA helicase motor protein [Vibrio vulnificus
           YJ016]
 gi|320155872|ref|YP_004188251.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O]
 gi|29611844|sp|Q8DAN4|RUVA_VIBVU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888369|sp|Q7MJ77|RUVA_VIBVY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|27361637|gb|AAO10544.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6]
 gi|319931184|gb|ADV86048.1| holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O]
          Length = 204

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +    S+    D+     + A +     S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K +       Q+IR AL+++
Sbjct: 178 ASKVVSQIAKPDMT---SEQLIREALKSM 203


>gi|225018933|ref|ZP_03708125.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum
           DSM 5476]
 gi|224948277|gb|EEG29486.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum
           DSM 5476]
          Length = 202

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 15/190 (7%)

Query: 1   MIGKIKGNIEGLY--EDYVL--IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  I+G +E L   +++ L  ID  G+ Y I   + T S L K G    L+   ++R+D
Sbjct: 1   MIYSIQGELELLTPADNHFLAVIDCGGIGYEIRTTMTTASQL-KQGGKAKLYTYLNVRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + LFGF    +R  F +L SV GVG + A+ +LS +T ++    +   +SK + +  GI
Sbjct: 60  AVELFGFFDTEERNCFKMLISVSGVGPKAALSILSNVTPSQFALCVASGDSKSLTRAKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---AISALVNLGYG 173
             KIA RI+ ELK K       +  +        +   ++PS + N   A+SALV LGY 
Sbjct: 120 GAKIAQRIVLELKDK-------ISNEQLAGGVTDSGSVALPSGSGNTAEAVSALVVLGYN 172

Query: 174 QDQATTAVVS 183
           +  A  A+ S
Sbjct: 173 KTDAVQALSS 182


>gi|282860281|ref|ZP_06269351.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010]
 gi|282586955|gb|EFB92190.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010]
          Length = 205

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57
           MI  IKG +  L     +++ +GV Y I   + T S +    D      E   T  R D 
Sbjct: 1   MIEYIKGELAELTPTLAVVEARGVGYAINISLNTYSAIQGKNDIKLYIHEAIVTGGRDDS 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GFLS  +R  + LL +V GVGA  A  +LS +T +EL   I   + K++  + GI 
Sbjct: 61  YTLYGFLSKQERSLYRLLITVSGVGANTARMILSSLTPSELCNVIANGDEKMLKAVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LK K   + S +  ++   +   +   +  +    A+SAL+ LG+    +
Sbjct: 121 LKTAQRIIVDLKDKI--MQSGIADELHINSSSASSNINT-AVKDEALSALIMLGFSPAPS 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              VVS+L ++  +  + Q+++LAL+ I
Sbjct: 178 AKVVVSILTEQPELPVE-QVVKLALKMI 204


>gi|198282210|ref|YP_002218531.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665092|ref|YP_002424575.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|226698723|sp|B5EJL8|RUVA_ACIF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725431|sp|B7J3G2|RUVA_ACIF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|198246731|gb|ACH82324.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517305|gb|ACK77891.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 193

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 11/184 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I      ++ +DVQGV Y +  P+     +   G   T+     +R+D   L
Sbjct: 1   MITSLTGTILQRRPPWLWLDVQGVGYELEMPLSGFYQMPAEGAALTVHTHLTIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL  V G+G +VA+  LS + A  L +++   N+  +  IPGI  K 
Sbjct: 61  YGFMTVAERDMFRLLIRVNGIGGKVALACLSGLPAERLSQAVAEGNTAQLTAIPGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   ++          +  Q            AI+AL+ LGY   QA+ A
Sbjct: 121 AERLVVELRDKMGGIAPGPMGRGGAGDPRQ-----------EAIAALLTLGYKPAQASQA 169

Query: 181 VVSV 184
           +  +
Sbjct: 170 IAGL 173


>gi|260551462|ref|ZP_05825646.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624]
 gi|260405456|gb|EEW98949.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624]
          Length = 203

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 108/212 (50%), Gaps = 22/212 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 5   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 64  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAIN-----AISALVNLGYG 173
           A R+M EL+ +  +L+    Q  S V        +MP   FA N     A +AL +LGY 
Sbjct: 124 AERLMIELRDRFKTLA----QGTSTV-------ATMPQIQFAANSPVAEAEAALQSLGYK 172

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             +A  AV +V       AD   IIR AL+++
Sbjct: 173 PLEAQKAVAAVKADYTESAD---IIRAALKSM 201


>gi|225012191|ref|ZP_03702628.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-2A]
 gi|225003746|gb|EEG41719.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-2A]
          Length = 193

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 15/183 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       V+ID  G+ Y +   + T S LG   +   LF    +R+D   L
Sbjct: 1   MITQIIGRLVEKSPTQVVIDCHGIGYEVNISLNTYSQLGD-DENIKLFTHLQIREDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++R  F LL SV G+GA +A  +LS +   ++  +II ++   I  I GI +K 
Sbjct: 60  FGFFTPMERSVFRLLLSVSGIGASIARTMLSSLEPQQIQRAIISEDLNTIKSIKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A R++ ELK K ++L             E   I S  +  I   A+SAL  LGY + Q+ 
Sbjct: 120 AQRVLIELKDKMLNLY------------EGEEIQSFANNTIKEEALSALEVLGYSRKQSE 167

Query: 179 TAV 181
             +
Sbjct: 168 KVI 170


>gi|167552471|ref|ZP_02346224.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322886|gb|EDZ10725.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 203

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRIRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +    +  V    A   S  +    A++ALV LGY   +A+ 
Sbjct: 121 AERLIVEMKDRFKGLNGDLFTPAVDLVLTSPASPTSEDA-EQEAVAALVALGYKPQEASR 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + + +   A    +IR ALRA
Sbjct: 180 MVSKIARPD---ASSETLIRDALRA 201


>gi|229814935|ref|ZP_04445273.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM
           13280]
 gi|229809422|gb|EEP45186.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM
           13280]
          Length = 207

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           +IDV G+ + +     T S L ++G    L+    +R+D   LFGF +  +R  F  L S
Sbjct: 18  VIDVNGIGFELGISATTASSLAQVGSPTRLYTRMVVREDSCTLFGFATKDERTMFDKLVS 77

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V GVGA++A+ +LS  T  EL   +++++ K +A +PG+  K A R++ ELKG       
Sbjct: 78  VSGVGAKLALAILSSFTVPELYTLVMMEDDKGMATVPGVGKKTAQRLILELKG------- 130

Query: 138 VVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGYGQDQATTAV 181
           V ++D S        +    + A         +A +AL+++G+   + T A+
Sbjct: 131 VFEKDRSLAGSAAPTVPLPFAPAAAAAPSAIEDATAALLSMGFTAAEVTLAL 182


>gi|260779157|ref|ZP_05888049.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605321|gb|EEX31616.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 224

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 110/210 (52%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 20  VIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 79

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 80  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 139

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAISALVNLGYGQD 175
           A R++ E+K +   L      D+   + + A + S P     +    AISAL+ LGY   
Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPHTDAAPVDSAPQVDQANAEEEAISALLALGYKPT 196

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+  V  V  K  +++ + ++IR AL+++
Sbjct: 197 QASKVVSQV--KTADMSSE-ELIREALKSM 223


>gi|212711936|ref|ZP_03320064.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM
           30120]
 gi|212685458|gb|EEB44986.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM
           30120]
          Length = 205

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISL-----SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A R++ E+K +   L     +SV   D+  V   ++   S       A +AL+ LGY   
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNSVSDIDLPSV---KSQGPSQADIEAEAAAALIALGYKPQ 177

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A+  V  V K +   +D   +IR ALRA
Sbjct: 178 EASRMVSKVAKPD---SDSETLIRDALRA 203


>gi|303258188|ref|ZP_07344195.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium
           1_1_47]
 gi|302858941|gb|EFL82025.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium
           1_1_47]
          Length = 189

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 24/208 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  I+G I       V+++  G+ Y I  P+ T   L  IG+   +F+ET M  R+D  
Sbjct: 1   MIATIRGKILQKNPPQVVVECGGLGYEIDVPMSTFYNLPNIGE--EVFLETVMIVREDAQ 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFL+  ++  F  L  V G+G R+++ +LS ++A ++  +I      ++  +PGI  
Sbjct: 59  LLYGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ ELK K +  S+                 ++ S     I ALV LG+ + +A 
Sbjct: 119 KTAERLVLELKDKMVVTSA----------------PTVSSVQTEVIQALVALGFSEREAR 162

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A  +V       AD S+ IRL LR ++
Sbjct: 163 GAAKNVPAD----ADASEGIRLCLRQLA 186


>gi|225873651|ref|YP_002755110.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC
           51196]
 gi|254766934|sp|C1F8Z2|RUVA_ACIC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225792770|gb|ACO32860.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC
           51196]
          Length = 198

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +        +++  GV Y +   + T + L   G    L + T + +D I L
Sbjct: 1   MIAHLRGTLLSKQPGQAIVECAGVGYDVAISVPTFTALPAEGAEVRLHIHTQVSEDAIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +++ F  L +V GVG ++A+ +LS ++    V ++  Q+   + +IPG+  K+
Sbjct: 61  FGFLDREEKRLFERLITVSGVGPKLAIKMLSGLSPERTVAALRAQDHASLTRIPGVGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L +             A          + +SAL+NLGY +  A  A
Sbjct: 121 AERLVVELKDKLDDLIAAAPAAGPVAAGPAAE---------DVLSALLNLGYQRPAALKA 171

Query: 181 VVSVLKKEKNIADDSQII-RLALRAI 205
           + + ++K+    +D  ++ R AL+ I
Sbjct: 172 IETAVEKDAAAGEDFDLLFRAALKLI 197


>gi|30063272|ref|NP_837443.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str.
           2457T]
 gi|30041524|gb|AAP17252.1| Holliday junction helicase subunit B [Shigella flexneri 2a str.
           2457T]
 gi|313650643|gb|EFS15045.1| holliday junction DNA helicase RuvA [Shigella flexneri 2a str.
           2457T]
 gi|332757632|gb|EGJ87965.1| holliday junction DNA helicase RuvA [Shigella flexneri 2747-71]
 gi|332758049|gb|EGJ88375.1| holliday junction DNA helicase RuvA [Shigella flexneri K-671]
 gi|333004779|gb|EGK24301.1| holliday junction DNA helicase RuvA [Shigella flexneri K-218]
 gi|333018630|gb|EGK37924.1| holliday junction DNA helicase RuvA [Shigella flexneri K-304]
          Length = 203

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + + +      +IR ALRA
Sbjct: 181 VSKIARPDTS---SETLIREALRA 201


>gi|93005514|ref|YP_579951.1| Holliday junction DNA helicase RuvA [Psychrobacter cryohalolentis
           K5]
 gi|123386742|sp|Q1QCY6|RUVA_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|92393192|gb|ABE74467.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter
           cryohalolentis K5]
          Length = 207

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  P+ +  C  ++ +  +++   H+R+D   
Sbjct: 1   MIGLINGQVQYLMAPTACVMTTSGVGYDIELPLPSF-CQLRLNEQASIWTHFHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R  F  L  + GVGA++A+ +LS ++A EL   +   +   + +IPGI  K
Sbjct: 60  LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQDSEDALTRIPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ ELK K  +    ++ D S +    + A I +  S       AL++LGY + +A
Sbjct: 120 TAQRLLIELKDKLKN----IEVDSSHLEFAMQPAPISAEGSIIAEVEGALISLGYKEREA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
             A+ +     +  AD   +++  L+
Sbjct: 176 QQAIKAAKSNGETFADTQSLLKATLQ 201


>gi|319761299|ref|YP_004125236.1| holliday junction DNA helicase ruva [Alicycliphilus denitrificans
           BC]
 gi|330823173|ref|YP_004386476.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           K601]
 gi|317115860|gb|ADU98348.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           BC]
 gi|329308545|gb|AEB82960.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           K601]
          Length = 190

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 23/209 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G   +L  +  +R+D   L
Sbjct: 1   MIGKLTGALLEKNPPEVLLDCHGVGYEVLVPMSTFYNLPAVGQPVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  V GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFATQQERQAFRELIKVSGVGPRTALSILSGLGVADLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  DM      + H  S     I  + AL+ LGY   +A  A
Sbjct: 121 AERLLL-------ELKGKLGADMGG----RPHAASADQADI--LQALLALGYNDKEAAAA 167

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       K +  D   S+ I+LAL++++
Sbjct: 168 L-------KGLPADVGVSEGIKLALKSLA 189


>gi|255038209|ref|YP_003088830.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM
           18053]
 gi|254950965|gb|ACT95665.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM
           18053]
          Length = 196

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 106/193 (54%), Gaps = 9/193 (4%)

Query: 13  YED--YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70
           Y+D  Y +IDV GV Y +   ++T + L  IG  C L    ++R+D   L+GF  + +++
Sbjct: 11  YKDPAYAIIDVNGVGYEVRISLQTYTSLPDIGARCKLVTFLNIREDAHVLYGFWGNDEKK 70

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F+ L S+ G+G   A+ +LS ++++E+ + II ++ ++I  I GI  K A R++ EL+ 
Sbjct: 71  LFLDLTSISGIGPSTALVMLSSLSSSEIRQGIIDEDLRLIQSIKGIGSKTAQRVILELRD 130

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190
           K       ++++       ++   S  +    A++ALV LG  +  A  ++ +++K+E  
Sbjct: 131 K-------IRKEELVSTGPRSVEASSNTLRSEALAALVTLGIPKATAEKSLDAIIKREGP 183

Query: 191 IADDSQIIRLALR 203
                 +I+LALR
Sbjct: 184 SISVENLIKLALR 196


>gi|46580661|ref|YP_011469.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81566321|sp|Q729U3|RUVA_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46450080|gb|AAS96729.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234390|gb|ADP87244.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris RCH1]
          Length = 202

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++   GV Y ++ P  TL+ L   G   + F+ T +R+D + L+GF +  +RQ F++L 
Sbjct: 18  VVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALELYGFATWDERQTFIVLT 77

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           S+  VGA+  + +LS+    +L   ++  +   + ++ GI  K A  I  ELK K     
Sbjct: 78  SISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKKTAQHIFLELKYK----- 132

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
            +  +D+               F  +A++ L NLGYG+++A+  +  VL  E ++
Sbjct: 133 -LKVEDLPAAAPLVTGGAPGGVFR-DALAGLANLGYGEEEASHVLKDVLHGEPDL 185


>gi|325474386|gb|EGC77574.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           denticola F0402]
          Length = 201

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 15/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G + G   D V ++  G+ + I+     L  LG +G    ++   + R+DQ+RL
Sbjct: 1   MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V+GVG R A+ ++S +  + L +++   +   + + PG+  K 
Sbjct: 61  FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNFSSLEKALEEGDLDTLQKAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKGK  +L+ V  +  + V+ E   I          ++AL  +G+ +      
Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCEYEDI----------VTALTEMGFERKSVIFQ 170

Query: 181 VVSVLKKEKNIADD-----SQIIRLALRAIS 206
           V  + ++ K    D      ++ R ++ A+S
Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201


>gi|120602036|ref|YP_966436.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris DP4]
 gi|166230546|sp|A1VC43|RUVA_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120562265|gb|ABM28009.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio vulgaris
           DP4]
          Length = 202

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++   GV Y ++ P  TL+ L   G   + F+ T +R+D + L+GF +  +RQ F++L 
Sbjct: 18  VVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALELYGFATWDERQTFIVLT 77

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           S+  VGA+  + +LS+    +L   ++  +   + ++ GI  K A  I  ELK K     
Sbjct: 78  SISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKKTAQHIFLELKYK----- 132

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
            +  +D+               F  +A++ L NLGYG+++A+  +  VL  E ++
Sbjct: 133 -LKVEDLPAAAPLVTGGAPGGVFR-DALAGLANLGYGEEEASHVLKEVLHGEPDL 185


>gi|169632720|ref|YP_001706456.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii SDF]
 gi|229470531|sp|B0VT90|RUVA_ACIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169151512|emb|CAP00277.1| holliday junction helicase subunit A [Acinetobacter baumannii]
          Length = 199

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVIREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +     ++ Q   S     Q    S    A  A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDR---FKTLAQGTSSAAALPQIQFVSNSPVA-EAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|42518563|ref|NP_964493.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC
           533]
 gi|81668203|sp|Q74KV9|RUVA_LACJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|41582848|gb|AAS08459.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC
           533]
 gi|329666839|gb|AEB92787.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii DPC
           6026]
          Length = 192

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 14/193 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y+++DV GV Y I CP        +     T++VE  +R   I L
Sbjct: 1   MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSYDENQP---ATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK              V K  A     PS   +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKL----------GDYVKKSTAAADLTPSLQ-DALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIAD 193
              + K  +N AD
Sbjct: 167 TPKLAKLPENTAD 179


>gi|260591290|ref|ZP_05856748.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319]
 gi|260536656|gb|EEX19273.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319]
          Length = 205

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 111/217 (51%), Gaps = 25/217 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  IKG +  L     +++  GV Y +   + T S + GK      L+V     T  R 
Sbjct: 1   MIEYIKGELAELTPAMAVVEAHGVGYALNISLNTYSAIQGKTA--VKLYVHEAIMTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + G
Sbjct: 59  DNYTLYGFANKQERALYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168
           I ++ A RI+ +LK K      ++Q  ++    ++ H+ + P + A++      A+SAL 
Sbjct: 119 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSNTPGTPAVDAGIKDEAVSALT 168

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            LG+    +   VVS+L ++ ++  + Q+++LAL+ I
Sbjct: 169 MLGFSPAPSAKVVVSILTEQPDLPVE-QVVKLALKMI 204


>gi|260437054|ref|ZP_05790870.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM
           2876]
 gi|292810363|gb|EFF69568.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM
           2876]
          Length = 198

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 112/206 (54%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +  +  + ++++  GV Y I  P   +  L  IG    ++   ++++D + L
Sbjct: 1   MITYIVGELTYIDNNTIILEACGVGYEITVPESVIPSLPGIGSSIKIYTYQNVKEDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F  L +V G+G + A+ +LS I+  EL  ++I  + K I   PGI  K 
Sbjct: 61  YGFLTMDDLKIFKQLITVNGIGPKGALSILSVISPDELRLAVISDDVKKIQSAPGIGSKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K + +  VV      ++ E+  + S+      A+SAL++LGY   ++ +A
Sbjct: 121 AQKLIIELKDK-LKIEDVVYD----LHDEKDIVKSVRD---EAVSALISLGYSNSESVSA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +++  E   ++D  I++ AL+ ++
Sbjct: 173 VSALVITENMTSED--ILKQALKKLA 196


>gi|238919502|ref|YP_002933017.1| Holliday junction DNA helicase RuvA [Edwardsiella ictaluri 93-146]
 gi|238869071|gb|ACR68782.1| holliday junction DNA helicase RuvA, putative [Edwardsiella
           ictaluri 93-146]
          Length = 204

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G I       V+++  GV Y +  P+     L ++G    +F    +R+D   L
Sbjct: 3   VIGRLRGTILEKQPPQVVLEAHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 63  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEVAALVKLPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ---AHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+K +   LS     D+      Q   A   +       A++AL+ LGY   +A
Sbjct: 123 AERLVVEMKDRFKGLSG----DLFTPADAQLPSAQPQAQADAEGEAVAALIALGYKPQEA 178

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  V  V       AD   +IR ALRA
Sbjct: 179 SRLVNRVAVAG---ADSETLIRDALRA 202


>gi|293609857|ref|ZP_06692159.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828309|gb|EFF86672.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123084|gb|ADY82607.1| holliday junction helicase subunit A [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 199

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 108/212 (50%), Gaps = 22/212 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAIN-----AISALVNLGYG 173
           A R+M EL+ +  +L+    Q  S V        +MP   FA N     A +AL +LGY 
Sbjct: 120 AERLMIELRDRFKTLA----QGTSTV-------ATMPQIQFAANSPVAEAEAALQSLGYK 168

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             +A  AV +V       AD   IIR AL+++
Sbjct: 169 PLEAQKAVAAVKADYTESAD---IIRAALKSM 197


>gi|297195496|ref|ZP_06912894.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722111|gb|EDY66019.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 202

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 16/175 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TLS L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPNTLSGL-RIGQEAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ ELK   G+ +     V   +S   ++Q H            +AL+ LGY
Sbjct: 120 AQKLLLELKDRLGEPLGTGPAVGAPVSRSWRDQLH------------AALIGLGY 162


>gi|169795065|ref|YP_001712858.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AYE]
 gi|213158273|ref|YP_002320324.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB0057]
 gi|215482614|ref|YP_002324806.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB307-0294]
 gi|239501033|ref|ZP_04660343.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB900]
 gi|260556549|ref|ZP_05828767.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC
           19606]
 gi|301344817|ref|ZP_07225558.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB056]
 gi|301510228|ref|ZP_07235465.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB058]
 gi|301595121|ref|ZP_07240129.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB059]
 gi|332851087|ref|ZP_08433196.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013150]
 gi|332869664|ref|ZP_08438852.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013113]
 gi|226698802|sp|A3M7W0|RUVA_ACIBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725429|sp|B7GYB6|RUVA_ACIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725430|sp|B7I5A8|RUVA_ACIB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229470533|sp|B0VDI6|RUVA_ACIBY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169147992|emb|CAM85855.1| holliday junction helicase subunit A [Acinetobacter baumannii AYE]
 gi|193078070|gb|ABO13004.2| holliday junction helicase subunit A [Acinetobacter baumannii ATCC
           17978]
 gi|213057433|gb|ACJ42335.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB0057]
 gi|213986860|gb|ACJ57159.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB307-0294]
 gi|260409808|gb|EEX03108.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC
           19606]
 gi|332730251|gb|EGJ61576.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013150]
 gi|332732566|gb|EGJ63799.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013113]
          Length = 199

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +     ++ Q   S     Q    S    A  A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDR---FKTLAQGTSSAAALPQIQFVSNSPVA-EAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|44888463|sp|Q83GK0|RUVA_TROWT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 194

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 111/206 (53%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V++++ G+ +++  P    S   ++     L+    +R+D + L
Sbjct: 1   MIASLSGLLEAVRPGSVVVNMHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S L+   F  L ++ GVG RVA+ +LS +T  E+  +++  + K + ++ G+  K+
Sbjct: 58  YGFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKL 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +L GK   L+SV        N++Q         +   + AL+ LG+ + ++  A
Sbjct: 118 AGTIVLQLAGK---LTSV-----PLENRKQEQAVDR---SAEIVQALIGLGWQRQESAAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V SVL+K++++    +I+R ALR ++
Sbjct: 167 VESVLEKDQSLT-MPEILRNALRYLA 191


>gi|317505321|ref|ZP_07963249.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           salivae DSM 15606]
 gi|315663535|gb|EFV03274.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           salivae DSM 15606]
          Length = 205

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  IKG +  L     +++  GV Y +   + T S + GK      L+V     T  R 
Sbjct: 1   MIEYIKGQLAELTPALAVVEAAGVGYALNISLTTYSGIQGK--KEVKLYVHEALTTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   LFGF++  +R+ + LL +V GVGA  A  +LS +  TEL  +I   + ++I  + G
Sbjct: 59  DSFTLFGFVNKQERELYRLLITVSGVGANTARMMLSSMNPTELCNAIANGDERMIKTVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I +K A RI+ +L+ K   ++S +  ++  V  E+A      +    A++AL  LG+   
Sbjct: 119 IGLKTAQRIIVDLRDKI--MASGIANELH-VGGEKAESTLNNAVKEEAVAALTMLGFSPA 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
                VVS+L+K+ N+  + Q+++ AL+
Sbjct: 176 PIAKVVVSILQKQANLPVE-QVVKEALK 202


>gi|152970923|ref|YP_001336032.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206580323|ref|YP_002237747.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342]
 gi|238895438|ref|YP_002920173.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041978|ref|ZP_06015160.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934605|ref|YP_003438664.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22]
 gi|290508806|ref|ZP_06548177.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55]
 gi|330001163|ref|ZP_08303909.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3]
 gi|166230560|sp|A6TB31|RUVA_KLEP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698734|sp|B5XQ04|RUVA_KLEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150955772|gb|ABR77802.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206569381|gb|ACI11157.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342]
 gi|238547755|dbj|BAH64106.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040676|gb|EEW41765.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288889314|gb|ADC57632.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22]
 gi|289778200|gb|EFD86197.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55]
 gi|328537774|gb|EGF63974.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3]
          Length = 203

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETAGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVASLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPAGPTADDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + + N      +IR ALRA
Sbjct: 181 VSKIARPDAN---SETLIREALRA 201


>gi|300362258|ref|ZP_07058434.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           gasseri JV-V03]
 gi|300353249|gb|EFJ69121.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           gasseri JV-V03]
          Length = 192

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 18/195 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV++DV G+ Y I CP        +     T++VE  +R   I L
Sbjct: 1   MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPT---PYSYQENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           AS+I+ +LKGK       S V  D+S            PS   +A+ ALV LGY Q +  
Sbjct: 118 ASQIVLDLKGKLGDYVKKSTVAADLS------------PSLQ-DAVLALVALGYTQKEVD 164

Query: 179 TAVVSVLKKEKNIAD 193
                + K  +N AD
Sbjct: 165 RITPKLAKLPENTAD 179


>gi|71065275|ref|YP_264002.1| Holliday junction DNA helicase RuvA [Psychrobacter arcticus 273-4]
 gi|90135656|sp|Q4FTU0|RUVA_PSYA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71038260|gb|AAZ18568.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter arcticus
           273-4]
          Length = 207

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   G+ Y I  P+ +  C  ++ +  +++   H+R+D   
Sbjct: 1   MIGLISGQVQYLMAPTACVMTTSGIGYDIELPLPSF-CQLRLNEQASIWTHFHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R  F  L  + GVGA++A+ +LS ++A EL   +  ++   + +IPGI  K
Sbjct: 60  LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQESETALTRIPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNK--EQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ ELK K  +    ++ D S +    + A I +  S       AL++LGY + +A
Sbjct: 120 TAQRLLIELKDKLKN----IEVDNSNLEFAIQPAPISAEDSIIAEVEGALMSLGYKEKEA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
             A+ +     +  AD   +++  L+
Sbjct: 176 QQAIKAAKSNGETFADTQSLLKATLQ 201


>gi|283832740|ref|ZP_06352481.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC
           29220]
 gi|291072423|gb|EFE10532.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC
           29220]
          Length = 203

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 15/210 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------NAISALVNLGYGQ 174
           A R++ E+K +   L   +    + +      + + P+  +       A++ALV LGY  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADL------VLTSPASPVTDDAEQEAVAALVALGYKP 174

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204
            +A+  V  + + +   A    +IR ALRA
Sbjct: 175 QEASRMVSKIARPD---ASSETLIREALRA 201


>gi|220904537|ref|YP_002479849.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868836|gb|ACL49171.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 204

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 7/192 (3%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   + +  +LI   GV Y +  P  TLS L   G+   L+    +R+D + 
Sbjct: 1   MIAYLEGRLAETWGNTCLLITENGVGYAVALPAHTLSVLPGRGEHLALYTSLAVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F +L S+  VGAR A+ +LS     +L   +  ++   + ++ GI  K
Sbjct: 61  LFGFATFEERQTFEVLISISKVGARTALSILSIYRPEDLRRIVFEEDVMALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  +  ELK K + +  V Q  +     E+       S   + +  L NLGY +D+   
Sbjct: 121 TAQHVFLELKYK-LKVDDVPQAAVLASTGERPG-----SVFRDVLDGLANLGYAEDECAP 174

Query: 180 AVVSVLKKEKNI 191
            V  +L +E ++
Sbjct: 175 MVKKLLHEEPDL 186


>gi|24113211|ref|NP_707721.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 301]
 gi|110805805|ref|YP_689325.1| Holliday junction DNA helicase RuvA [Shigella flexneri 5 str. 8401]
 gi|44888467|sp|Q83KR4|RUVA_SHIFL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123342783|sp|Q0T3U5|RUVA_SHIF8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24052207|gb|AAN43428.1| Holliday junction helicase subunit B [Shigella flexneri 2a str.
           301]
 gi|110615353|gb|ABF04020.1| Holliday junction helicase [Shigella flexneri 5 str. 8401]
          Length = 203

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGPLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + + +      +IR ALRA
Sbjct: 181 VSKIARPDTS---SETLIREALRA 201


>gi|260598336|ref|YP_003210907.1| Holliday junction DNA helicase RuvA [Cronobacter turicensis z3032]
 gi|260217513|emb|CBA31691.1| Holliday junction ATP-dependent DNA helicase ruvA [Cronobacter
           turicensis z3032]
          Length = 203

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y I+ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLEAGGVGYEIHMPMTCFYELPETGKEAVVFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        ++      A++ALV+LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V + +   A    +IR ALRA
Sbjct: 181 VSKVAQPD---ASSETLIREALRA 201


>gi|56963319|ref|YP_175050.1| Holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16]
 gi|81366439|sp|Q5WHR6|RUVA_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56909562|dbj|BAD64089.1| holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16]
          Length = 199

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 97/176 (55%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETH--MRQD 56
           MI  IKGN+  +   Y++++  G+ + IYC  P R ++ L +      + V TH  +R+D
Sbjct: 1   MIDYIKGNLVAVEPAYLVVEANGIGFQIYCANPYRFINDLNR-----EVVVPTHHYVRED 55

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
             RLFGF +  +R  F  L +V G+G + A+ +L+     +++ +I  ++  ++ + PG+
Sbjct: 56  SQRLFGFTTRTERLLFEKLLNVSGIGPKGALAILASGEPEDIIHAIEQEDEALLVRFPGV 115

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             K A +I+ +LKGK   ++ +++   +  +K+Q +    P    +A+ AL  LGY
Sbjct: 116 GKKTARQIILDLKGKLDDMAPMLEP-AAGADKQQKN----PQLE-DALEALRALGY 165


>gi|82776447|ref|YP_402796.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae Sd197]
 gi|309789257|ref|ZP_07683850.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617]
 gi|90135814|sp|Q32HA0|RUVA_SHIDS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81240595|gb|ABB61305.1| Holliday junction helicase subunit B [Shigella dysenteriae Sd197]
 gi|308923011|gb|EFP68525.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617]
          Length = 203

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +        +IR ALRA
Sbjct: 181 VSKIARPD---VSSETLIREALRA 201


>gi|118617340|ref|YP_905672.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99]
 gi|183982124|ref|YP_001850415.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M]
 gi|166230572|sp|A0PPD2|RUVA_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560107|sp|B2HN62|RUVA_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118569450|gb|ABL04201.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99]
 gi|183175450|gb|ACC40560.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M]
          Length = 197

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 12/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MISSLRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTDARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+    R  F+ L SV GVG R+AM  LS   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFVDGETRDLFLTLLSVSGVGPRLAMATLSVHDANGLRQALADGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     S        VN    H    P      + ALV LG+   QA  A
Sbjct: 120 AERMVVELRDKVGPAGSAATA--PAVN---GHTVRAP-----VVEALVGLGFAAKQAEEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
              VL  +   A  S  +R AL
Sbjct: 170 TDKVLAGDGE-ATTSSALRAAL 190


>gi|171742914|ref|ZP_02918721.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC
           27678]
 gi|171278528|gb|EDT46189.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC
           27678]
          Length = 202

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 20/209 (9%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           + G +E +     LI+V GV Y    P   L+ +   G    ++   ++ QD I LFGFL
Sbjct: 2   LHGRVESVDMSSALIEVGGVGYETRMPSADLASM-HAGQEVKVYTSLNVSQDAITLFGFL 60

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K A +I
Sbjct: 61  TPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKGAQKI 120

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQATTAVV 182
           + ELKG +I LS +         +  A + S P  + +   +  L++LG+ Q  A  AV 
Sbjct: 121 ILELKG-SIDLSQI---------ETAASVISRPEDTGSEQVVEGLISLGWRQQDALHAVQ 170

Query: 183 SVLKKEKNIA------DDSQIIRLALRAI 205
            V +   +IA      D  ++++LAL ++
Sbjct: 171 EVCRS-NDIATPLSNEDVPRVLKLALTSL 198


>gi|209517513|ref|ZP_03266353.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160]
 gi|209502046|gb|EEA02062.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160]
          Length = 193

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 21/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSSGERIVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  +    +        A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGAMAGAASAS----DHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206
           +       KN+      S+ I+LAL+A+S
Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191


>gi|311748060|ref|ZP_07721845.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1]
 gi|126575044|gb|EAZ79402.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1]
          Length = 199

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 12/192 (6%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YVLIDV G+ Y +   ++T S + K  +   L    H+++D   L+GF +  +++ F+LL
Sbjct: 16  YVLIDVGGIGYHVKISLQTYSQI-KDEEQIKLLTYLHIKEDAHTLYGFKNADEKRLFLLL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK---GKA 132
            S+ GVG    + +LS ++  E+ +SI+  +   I  + GI  K A RI+ ELK   GKA
Sbjct: 75  ISINGVGPNTGLMILSSLSTEEIEQSILSGDVATIQHVKGIGAKTAQRIILELKDKVGKA 134

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
                    D S  + +   + +  +    A+ AL+ LG+ +  A   + +VLKK     
Sbjct: 135 T--------DSSSGDSQVGFLNAHNNLREEALKALITLGFPKTAAEKNIRAVLKKTTGEI 186

Query: 193 DDSQIIRLALRA 204
              ++I+ +L+ 
Sbjct: 187 SLEELIKASLKT 198


>gi|218548578|ref|YP_002382369.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ATCC
           35469]
 gi|226725445|sp|B7LPI3|RUVA_ESCF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218356119|emb|CAQ88736.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 203

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR AL A
Sbjct: 181 VSKIARPD---ASSETLIREALHA 201


>gi|269103018|ref|ZP_06155715.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162916|gb|EEZ41412.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 187

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 23  GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82
           G+ Y +  P+     L ++G    +F    +R+D   L+GF    +R+ F  +    GVG
Sbjct: 3   GIGYEVQMPMSCFYELPEVGQEAIIFTHFVVREDAQLLYGFNKKSERELFREVIKANGVG 62

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS----V 138
            ++ + +LS +TA++ V S+  ++   + +IPG+  K A R++ E+K +           
Sbjct: 63  PKLGLAILSAMTASQFVLSVEQEDITTLVKIPGVGKKTAERLLVEMKDRLKGWGEGDLFT 122

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
             QD +  N    +  S       A+SALV LGY   QA+  V  V + E +      II
Sbjct: 123 PAQDTAASNAPIQNPSSQARAEDEAVSALVALGYKPQQASKVVSQVAQPEMS---SETII 179

Query: 199 RLALRAI 205
           R ALR++
Sbjct: 180 REALRSM 186


>gi|226952125|ref|ZP_03822589.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC
           27244]
 gi|226837134|gb|EEH69517.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC
           27244]
          Length = 201

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   L+ +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A R+M EL+ +  +L++         N   A I  M +  +  A +AL +LGY   +A  
Sbjct: 120 AERLMIELRDRFKALANSTG---GTTNTAAAQIQFMANSPVAEAEAALQSLGYKPAEAQK 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV +V       AD   IIR AL+++
Sbjct: 177 AVAAVKADYTESAD---IIRAALKSM 199


>gi|237731899|ref|ZP_04562380.1| holliday junction helicase subunit B [Citrobacter sp. 30_2]
 gi|226907438|gb|EEH93356.1| holliday junction helicase subunit B [Citrobacter sp. 30_2]
          Length = 203

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDTEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|317128202|ref|YP_004094484.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM
           2522]
 gi|315473150|gb|ADU29753.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM
           2522]
          Length = 204

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 28/215 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           MI  + G +  +  + V ++V  V Y+++C  P R       I +  T++   H+R+D I
Sbjct: 1   MIESLTGVVSNIEIESVTLNVHDVGYLVFCANPFRYEE---NINEKVTIYTYQHVREDAI 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF +  +R+ F  L  V G+G + A+ +L+    T +V++I  +N K + + PG+  
Sbjct: 58  KLYGFKNRDERKLFEKLLQVSGIGPKGALAILATGEPTLVVQAIEAENEKFLVKFPGVGK 117

Query: 119 KIASRIMTELKGKAISLSS----------VVQQDMSCVNKEQAHICSMPSFAINAISALV 168
           K A +I+ +LKGK +               +  DM   N E             A+ AL 
Sbjct: 118 KTARQIILDLKGKLVDFLQESGGEDTKLIAIDDDMQLENYELEE----------ALEALK 167

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            LGY  D+    V+  LK  K   D    I++AL+
Sbjct: 168 ALGY-VDREINKVLPKLKDTKETTDG--YIKIALK 199


>gi|89889458|ref|ZP_01200969.1| Holliday junction DNA helicase ruvA [Flavobacteria bacterium BBFL7]
 gi|89517731|gb|EAS20387.1| Holliday junction DNA  helicase ruvA [Flavobacteria bacterium
           BBFL7]
          Length = 193

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V+ID  GV Y +   + T S + + G+   LF    +R+D  RL
Sbjct: 1   MIAQLQGKLVEKNLTDVVIDCGGVGYFVEISLHTYSLIPE-GELIKLFTFMQVREDSQRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R+ F LL SV G+GA  A  +LS +   ++ ++I   + + I  + GI  K 
Sbjct: 60  FGFMEKSEREVFKLLLSVSGIGASTARTMLSSLEPRQIAQAIASGDVRTIQSVKGIGAKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K           +  +  E   + S  +    A+SAL  LGY + QA   
Sbjct: 120 AQRVILDLKDKI----------LQVLEGEDISLHSSNTGRDEALSALETLGYLRKQAQKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L  E + + ++ +I+ AL+ +
Sbjct: 170 VDKILASEPDASVET-LIKGALKQL 193


>gi|15605230|ref|NP_220016.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           D/UW-3/CX]
 gi|6685940|sp|O84509|RUVA_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3328938|gb|AAC68102.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436962|gb|ADH19132.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11222]
 gi|297748631|gb|ADI51177.1| RuvA [Chlamydia trachomatis D-EC]
 gi|297749511|gb|ADI52189.1| RuvA [Chlamydia trachomatis D-LC]
          Length = 200

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R L  L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176
            A ++M +LK K  +L  +  ++   V    A+     SF    I AL+NLG+ +   D+
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
             T  V  L +E ++A+   ++ +ALR
Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198


>gi|157830735|pdb|1CUK|A Chain A, Escherichia Coli Ruva Protein At Ph 4.9 And Room
           Temperature
 gi|581226|emb|CAA30119.1| unnamed protein product [Escherichia coli]
          Length = 203

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ LV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVARLVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|269967685|ref|ZP_06181735.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           40B]
 gi|269827772|gb|EEZ82056.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           40B]
          Length = 234

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 21/214 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 32  VIGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 91

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TAT+ V  +  ++   + ++PG+  K 
Sbjct: 92  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 151

Query: 121 ASRIMTELKGKA---------ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+K +             +     D S  +               AISAL+ LG
Sbjct: 152 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSSATSNNAEE---------EAISALLALG 202

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           Y   QA+  V  + K + +     Q+IR AL+++
Sbjct: 203 YKPTQASKVVSQIAKPDMS---SEQMIREALKSM 233


>gi|184159149|ref|YP_001847488.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ACICU]
 gi|332875977|ref|ZP_08443763.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6014059]
 gi|229470530|sp|B2HWT2|RUVA_ACIBC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183210743|gb|ACC58141.1| Holliday junction resolvasome, DNA-binding subunit [Acinetobacter
           baumannii ACICU]
 gi|322509062|gb|ADX04516.1| ruvA [Acinetobacter baumannii 1656-2]
 gi|323519043|gb|ADX93424.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735843|gb|EGJ66884.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6014059]
          Length = 199

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS +    LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLNVELLVHTIEHDDVNTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +     ++ Q   S     Q    S    A  A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDR---FKTLAQGTSSAAALPQIQFVSNSPVA-EAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|167751984|ref|ZP_02424111.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216]
 gi|167660225|gb|EDS04355.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216]
          Length = 194

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 17/202 (8%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           + G I  L   + ++DV GV Y +   ++T S + +  D   LFV   +R+D   L+GF 
Sbjct: 5   LSGTISELAPTHAVLDVGGVGYFLQISLQTYSEI-EHSDRVKLFVHYVVREDAQLLYGFA 63

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S  +R+ F  L SV GVG   A  +LS  +  EL   I  +N+ ++  + G+ +K A +I
Sbjct: 64  SKAERELFRHLISVSGVGGNTARMILSTYSPRELQGIIATENAVLLKNVKGLGLKTAQKI 123

Query: 125 MTELKGKAISL---SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           + EL GK   L      V   ++  + E+            A++ALV LG+G+  A   V
Sbjct: 124 IVELSGKMAGLGLTGDTVTAPVAGGDYEE------------ALAALVMLGFGK-AAADKV 170

Query: 182 VSVLKKEKNIADDSQIIRLALR 203
           V ++ +E   A    ++R++L+
Sbjct: 171 VKIVARENPGASVEDLVRMSLK 192


>gi|145220343|ref|YP_001131052.1| Holliday junction DNA helicase RuvA [Prosthecochloris vibrioformis
           DSM 265]
 gi|189045761|sp|A4SGE1|RUVA_PROVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145206507|gb|ABP37550.1| Holliday junction DNA helicase subunit RuvA [Chlorobium
           phaeovibrioides DSM 265]
          Length = 200

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 7/190 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     +  +++V G+ Y       T   L ++G    L+    +R+D ++L
Sbjct: 1   MYAYFRGRLVSCLPEEAVLEVSGIAYRFLVSAGTARQLPEVGTETILYTHLSVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F LL    GVG ++A+ VLS +   E+ E+I+    + +  I G+  K 
Sbjct: 61  YGFATEEEKQLFRLLLLTSGVGPKLALAVLSGMAVPEVHEAILANAPERLFGITGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + L+  V   ++ V  ++        F  +A++AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDKILKLAP-VGSAVASVAADRG------GFREDAVNALMTLGFPRPVANQA 173

Query: 181 VVSVLKKEKN 190
           V   L+ E +
Sbjct: 174 VGCALEPEPD 183


>gi|213649641|ref|ZP_03379694.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 203

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 25/215 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           A R++ E+K +           A+ L        +  + EQ            A++ALV 
Sbjct: 121 AERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQ-----------EAVAALVA 169

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           LGY   +A+  V  + + +   A    +IR ALRA
Sbjct: 170 LGYKPQEASRMVSKIARPD---ASSETLIRDALRA 201


>gi|269216143|ref|ZP_06159997.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122]
 gi|269130402|gb|EEZ61480.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122]
          Length = 196

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G + G  +    +DV GV + +      LS L   G+   +     +R+D + L
Sbjct: 1   MIAFLNGVVAGKNQSTAFVDVGGVGFAVGMSANDLSRLPPTGERVLIHTYFAVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS   +  F  L  V  VG ++A+  LS   A+E + +++  ++  ++++PGI  K+
Sbjct: 61  YGFLSLESKSLFEKLIGVSSVGPKIALAALSTFKASEFIAAVLSGDAAAVSKVPGIGKKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ ELKG   SL+     D+ S    EQA           A  AL+ +G+   +A  
Sbjct: 121 AQRIILELKG---SLADASVDDLFSTKAGEQAARLQ------GAKEALLAMGFTSAEAD- 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
             V++    + +  DS +++ ALR
Sbjct: 171 --VALKDAPETLVTDSALLQYALR 192


>gi|296137136|ref|YP_003644378.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12]
 gi|295797258|gb|ADG32048.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12]
          Length = 190

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 72/126 (57%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ TL  L  +G   TL + T +R+D   L
Sbjct: 1   MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAVGHAVTLLIHTVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+G R+A+ VLS ++ +E+ +++  Q++    ++PGI  K 
Sbjct: 61  YGFATAGERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120

Query: 121 ASRIMT 126
           A R++ 
Sbjct: 121 AERLLL 126


>gi|223986042|ref|ZP_03636071.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM
           12042]
 gi|223961992|gb|EEF66475.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM
           12042]
          Length = 193

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +  D+++I+ QG+ Y ++   R  +   ++     +F   H+R+D+  L
Sbjct: 1   MIAMIKGTVFAVGLDWIIIENQGIGYKVFFS-RPEAV--RLNQEVRVFTYQHVREDEFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  ++  F+ L SV+G+G + AM +L+  T  ++V+ I   +   + ++PGI  K 
Sbjct: 58  FGFLSMEEQDLFVKLISVKGLGPKTAMNMLAAATYQQMVQMIEQGDVAALKKMPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK              V +E A   S  +   +A+ AL  LGY Q +  + 
Sbjct: 118 ASQIILDLKGK-------------LVREETAEGKSSQAIE-DALEALKALGYKQSE-LSG 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V+++  +   D + ++L L+ +
Sbjct: 163 LSKVMREHPDKTTD-EYVKLGLQHL 186


>gi|307545151|ref|YP_003897630.1| Holliday junction DNA helicase motor protein [Halomonas elongata
           DSM 2581]
 gi|307217175|emb|CBV42445.1| Holliday junction DNA helicase motor protein [Halomonas elongata
           DSM 2581]
          Length = 203

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 3/179 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +   + TL  L   G+  +L+    +R D   L
Sbjct: 1   MIGRLRGTLLEKQPPWLVVDVAGVGYELEASMTTLVALPGCGEDVSLYTHLSVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R  F  L  V G+G ++A+ +LS +     +  ++  + K + ++PG+  K 
Sbjct: 61  YGFAREQERSLFRALIKVNGIGPKLALAILSGMDEDAFIRCVMDDDIKALTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQAT 178
           A R++ E++ +        Q  +S  +         P   + +A +ALV+LGY   +AT
Sbjct: 121 AERLVIEMRDRFPHWQDSTQ--VSAGDAGMGATTPSPKDPLADAEAALVSLGYKPSEAT 177


>gi|37526027|ref|NP_929371.1| Holliday junction DNA helicase motor protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|44888380|sp|Q7N548|RUVA_PHOLL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|36785457|emb|CAE14404.1| Holliday junction DNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 205

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L   G    LF    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDAGQEAVLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEREAIVSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N         S       A +ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPATAKQTTSDADSEAEAAAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  + K     AD   +IR ALRA+
Sbjct: 181 RMVSKIAKPG---ADCETLIREALRAV 204


>gi|298252762|ref|ZP_06976556.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis 5-1]
 gi|297533126|gb|EFH72010.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis 5-1]
          Length = 209

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 12/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LI V GV Y  Y P + LS L + G    ++    + QD + L
Sbjct: 1   MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+ +Q V G+G +VA+ +LS +    L+++I   +   ++  PG+  K 
Sbjct: 60  YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG   SL S +  D S  +  Q++   + S     I  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELKG---SLDSSILAD-SSNDSTQSNKQIVDSSVQCVIEGLVSLGWRQVDAQRA 175

Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAI 205
           V  V   E NI      AD   ++R+AL ++
Sbjct: 176 VEQVC-AENNISIPISDADLPNVLRMALASL 205


>gi|171915820|ref|ZP_02931290.1| Holliday junction DNA helicase motor protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 203

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++     + + +DV GV Y+   P+ T   L        L    ++ +    L
Sbjct: 1   MIAYLRGHLVEALPNQLTVDVNGVGYLCLVPLSTYDRLAGTQGEVRLLTHLNITERDHTL 60

Query: 61  FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           FGF +  +R  F +L+  V G+G ++A+ VLS +   +  +++I  +   +++I G+  K
Sbjct: 61  FGFATAEERDLFRLLINRVSGIGPKMALAVLSGMAVGDFKDNVIRNDVTALSRISGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA--INAISALVNLGYGQDQA 177
            A RI+ ELK K + +    Q   S  N     +   P+ A   +A+ AL+ LG+ Q +A
Sbjct: 121 TAERIVLELKDK-VGIVDTWQAARSTGNS----LVPDPTQAAQTDAVLALIALGFKQTEA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              V  ++KK   +    ++IR ALR
Sbjct: 176 QKTVQDLVKKAGGVVSADKLIRDALR 201


>gi|296170845|ref|ZP_06852406.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894501|gb|EFG74242.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 197

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G + G+  D+ +I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLGVALDHAVIEAAGVGYRVNATPSTLATL-RTGTEARLITAMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA--QIPGISM 118
           +GF     R  F+ L +V GVG R+AM  L+   A  L +  +L +  V A  ++PGI  
Sbjct: 60  YGFTDAETRDLFLTLLTVSGVGPRLAMATLAVHDAAALRQ--VLHDGDVTALTRVPGIGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           + A R++ EL+ K  + ++      S VN    H    P      + ALV LG+   QA 
Sbjct: 118 RGAERMVLELRDKVGAAAAAGG--ASVVN---GHAVRGP-----VVEALVGLGFAVKQAE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202
            A   VL  E++ A  S  +R AL
Sbjct: 168 EATDKVLATEQD-ATTSGALRAAL 190


>gi|294674697|ref|YP_003575313.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23]
 gi|294472323|gb|ADE81712.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23]
          Length = 200

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG +  L      ++  GV Y +   + T S + GK      L+V   +R+D   
Sbjct: 1   MIEYIKGELTELTPALATVEACGVGYGLNISLNTFSAIQGK--KEVKLYVYEAIREDAHV 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF++  +R+ F+LL +V GVGA  A  +LS ++  EL  +I + N+K+I  I GI   
Sbjct: 59  LFGFVNKKEREMFLLLITVSGVGANTARMMLSGMSVAELCNAISMGNAKLIQGIKGIGKM 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +L+ K ++L   +  ++    +  A + +       AI+AL  LG+       
Sbjct: 119 TAQRIIVDLRDKIVTLG--ISDEIPAGGQIAAPVNN--QVKDEAIAALTMLGFAPAPTQK 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V+ +L+   N A   ++++LAL+ I
Sbjct: 175 VVLQILQANPN-APVEEVVKLALKQI 199


>gi|237738311|ref|ZP_04568792.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC
           9817]
 gi|229420191|gb|EEO35238.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC
           9817]
          Length = 196

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 13/183 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +E    DY+ +DV GV Y +   +R    + K G+   L++  ++++D  +L
Sbjct: 1   MFEYLKGKVEYKKPDYLALDVNGVGYKVNISLRVYDKI-KTGESVRLYIFNYIKEDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R  F +L  V+GVG  + + ++S     +L + +   +   + ++P +  K 
Sbjct: 60  IGFLEERERNLFEMLLGVKGVGVSLTLSIMSTFDVEQLRKIVAENDYATLKRVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--ISALVNLGYGQDQAT 178
           A +++ +LKGK  ++ ++  QD +             SFAI      AL  LGY Q +  
Sbjct: 120 AQQVILDLKGKLKAIGNLFTQDENL----------FESFAIEDELYEALEALGYSQKEIN 169

Query: 179 TAV 181
           + V
Sbjct: 170 SLV 172


>gi|16760845|ref|NP_456462.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765237|ref|NP_460852.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29141463|ref|NP_804805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413186|ref|YP_150261.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167994196|ref|ZP_02575288.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234044|ref|ZP_02659102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168241523|ref|ZP_02666455.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259832|ref|ZP_02681805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168462574|ref|ZP_02696505.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820718|ref|ZP_02832718.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446097|ref|YP_002041160.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451798|ref|YP_002045948.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471309|ref|ZP_03077293.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197247981|ref|YP_002146128.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263523|ref|ZP_03163597.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362112|ref|YP_002141749.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242475|ref|YP_002215191.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389612|ref|ZP_03216223.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205352399|ref|YP_002226200.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856584|ref|YP_002243235.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213426405|ref|ZP_03359155.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580455|ref|ZP_03362281.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609154|ref|ZP_03368980.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213859991|ref|ZP_03385695.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238912045|ref|ZP_04655882.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824023|ref|ZP_06543621.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|54039573|sp|P66747|RUVA_SALTI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042202|sp|P66746|RUVA_SALTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81361945|sp|Q5PN01|RUVA_SALPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698738|sp|B5F3J6|RUVA_SALA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698739|sp|B5FSN7|RUVA_SALDC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698740|sp|B5R1V8|RUVA_SALEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698741|sp|B5R8E2|RUVA_SALG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560123|sp|B4T7Z3|RUVA_SALHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560124|sp|B4SVE5|RUVA_SALNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560125|sp|B5BH60|RUVA_SALPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|25299990|pir||AC0743 Holliday junction DNA helicase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420431|gb|AAL20811.1| Holliday junction helicase subunit A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503142|emb|CAD05646.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137090|gb|AAO68654.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127443|gb|AAV76949.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194404760|gb|ACF64982.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410102|gb|ACF70321.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457673|gb|EDX46512.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634327|gb|EDX52679.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093589|emb|CAR59052.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211684|gb|ACH49081.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241778|gb|EDY24398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197936991|gb|ACH74324.1| holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602057|gb|EDZ00603.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205272180|emb|CAR37038.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205327892|gb|EDZ14656.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331994|gb|EDZ18758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339435|gb|EDZ26199.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342743|gb|EDZ29507.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350710|gb|EDZ37341.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708387|emb|CAR32691.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247066|emb|CBG24885.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993877|gb|ACY88762.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158416|emb|CBW17923.1| Holliday junction DNA helicase ruvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912889|dbj|BAJ36863.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085488|emb|CBY95269.1| Holliday junction ATP-dependent DNA helicase ruvA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321224538|gb|EFX49601.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130179|gb|ADX17609.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326627451|gb|EGE33794.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988789|gb|AEF07772.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 203

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 25/215 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           A R++ E+K +           A+ L        +  + EQ            A++ALV 
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQ-----------EAVAALVA 169

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           LGY   +A+  V  + + +   A    +IR ALRA
Sbjct: 170 LGYKPQEASRMVSKIARPD---ASSETLIRDALRA 201


>gi|327398312|ref|YP_004339181.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima
           DSM 10411]
 gi|327180941|gb|AEA33122.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima
           DSM 10411]
          Length = 189

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 20/188 (10%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           +IDV G+   I  P+ T + L +IG+ CTL  E  + +  ++L+GF +  ++  F  L+ 
Sbjct: 18  VIDVNGLMLDISIPLSTFNKLPEIGEECTLLCELVIGEKSLKLYGFSTKEEKNLFNSLRK 77

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           +  +GA+ A+ +LS I+  +   +I  QN +++ +IPGI  K A  I+ E   K      
Sbjct: 78  ISKIGAQTAISILSNISIEQFYRAIEEQNKELLTKIPGIGKKTAISIIVEFSSK------ 131

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
           + + D              P    +AI+ L  LG+ Q  A+  V  + + + NI  +  +
Sbjct: 132 IPKTD-------------NPPIVDDAITTLQGLGFSQSDASKIVNEIYRNKPNITIE-DL 177

Query: 198 IRLALRAI 205
           I+ +L+ I
Sbjct: 178 IKESLKNI 185


>gi|307299266|ref|ZP_07579067.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915062|gb|EFN45448.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 197

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +  + E  ++I V G+ + + C   T+S L    D   L    + +     L
Sbjct: 1   MLEGIEGRVREIRETEIVIQVGGLFFKVNCTPNTISKLPVEKDVYLLTFMAYSQDRPPEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F +L     +G + AM +LS  + + +   I  +N+  ++ +PGI  K 
Sbjct: 61  YGFYDQEEKELFNILLRASKIGPKSAMKILSSASPSRIKHIISTKNAAELSSLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E       L+S+V  D S +  E+       S    A++AL +LG+ ++Q+   
Sbjct: 121 AERMIVE-------LASLV--DTSGITDEETIPGVERSHGEEAVAALTSLGFDENQSRKV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +LK E+ I D   +I+ AL+ I
Sbjct: 172 VIEILKAEREI-DTHDLIKKALKEI 195


>gi|318041282|ref|ZP_07973238.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0101]
          Length = 220

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 21/221 (9%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G +   ++      +L+   GV Y ++ P R    LG+ G   +L +   +R+D
Sbjct: 1   MIGWLQGQLADRWQQASRCGLLLVCGGVGYEVHLPRRQWERLGETGTELSLHIHQVIRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  F  L +V GVG ++A+G+L +++  ELV +I+  + +++ Q PG+
Sbjct: 61  AWTLYGFASRAERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRLLTQAPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISA--------- 166
             + A R+  EL+      + + ++  S  N E     ++P S +  A+ +         
Sbjct: 121 GKRTAERLAVELR------TRLQERYGSVANPEDTADLALPASGSAEALPSAVRDEVNLT 174

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAIS 206
           L  LGY   +   A+ +V   E+++   +   +R  LR +S
Sbjct: 175 LTALGYEALEINRALRAVATTEEDLGQGADAWLRECLRWLS 215


>gi|312139494|ref|YP_004006830.1| holliday junction DNA helicase ruva [Rhodococcus equi 103S]
 gi|311888833|emb|CBH48145.1| Holliday junction DNA helicase RuvA [Rhodococcus equi 103S]
          Length = 201

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + GD   L     +R+D + L
Sbjct: 1   MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM +L+ +    L +++   N   + ++PGI  + 
Sbjct: 60  YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++  V  D+           S        + AL  LG+  + A  A
Sbjct: 120 AERMVVELRDKVEAVA--VTGDLPGAGA----ATSASVVRDQVVEALTGLGFKLEHAEKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
             +V+  +   A  S ++R AL
Sbjct: 174 TDTVVAADPE-APTSTVLRSAL 194


>gi|294341429|emb|CAZ89846.1| Holliday junction ATP-dependent DNA helicase ruvA [Thiomonas sp.
           3As]
          Length = 190

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 71/126 (56%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ TL  L   G   TL + T +R+D   L
Sbjct: 1   MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAAGHAVTLLIHTVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+G R+A+ VLS ++ +E+ +++  Q++    ++PGI  K 
Sbjct: 61  YGFATAAERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120

Query: 121 ASRIMT 126
           A R++ 
Sbjct: 121 AERLLL 126


>gi|29833376|ref|NP_828010.1| Holliday junction DNA helicase RuvA [Streptomyces avermitilis
           MA-4680]
 gi|44888446|sp|Q820F4|RUVA_STRAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29610499|dbj|BAC74545.1| putative Holliday junction DNA helicase subunit B [Streptomyces
           avermitilis MA-4680]
          Length = 203

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 17/176 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V G+   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RMGREAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVSTGDEKALVAVPGIGKKG 119

Query: 121 ASRIMTELK---GKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ ELK   G+ +      + + ++   +EQ H            +AL+ LGY
Sbjct: 120 AQKLLLELKDRLGEPLGTGGPAIGRAVTTGWREQLH------------AALIGLGY 163


>gi|218133570|ref|ZP_03462374.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990945|gb|EEC56951.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC
           43243]
          Length = 203

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  IKG +  + E  ++++   G+   I  P   +  +   G    +    ++++D + 
Sbjct: 1   MISYIKGELTEVSETSIVVETSSGIGMNIIVPQTVIDKMPSCGSMVKIHTYLNVKEDSMT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF++  D   F LL +V G+G + A+ +LS IT  +L  +++  + K I++ PGI  K
Sbjct: 61  LYGFINREDVDIFRLLITVNGIGPKGALAILSTITPDDLRFAVLSDDVKAISRAPGIGAK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177
            A R++ ELK K + L    +  +S        +  +P+     + + ALV LGYG+ +A
Sbjct: 121 TAQRMIIELKDK-LKLEEAFEIRLS-----HEEVDDLPAGDARNDTVQALVALGYGRSEA 174

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV  V   +    D  Q+I+ AL+ ++
Sbjct: 175 ARAVNMVDGADS--MDSEQLIKAALKKLA 201


>gi|212715818|ref|ZP_03323946.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661185|gb|EEB21760.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM
           16992]
          Length = 210

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G ++ +     +I+V GV Y    P   L+ +   G    ++   ++ QD I L
Sbjct: 6   MIGMLHGQVDSIDAASAIIEVGGVGYETRMPSADLASM-HAGQTVKVYTSLNVSQDAITL 64

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 65  YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLARAVADGDATALAKAPGLGKKG 124

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG +I LS +        + E        + +   +  L++LG+ Q  A  A
Sbjct: 125 AQKIILELKG-SIDLSQIEGASPETRSTED-------TGSEQVVEGLMSLGWRQQDAVHA 176

Query: 181 VVSVLKKEK---NIADD--SQIIRLALRAI 205
           V  V +       + DD   +++RLAL ++
Sbjct: 177 VQEVCESNHIDIPLGDDDVPRVLRLALASL 206


>gi|294141122|ref|YP_003557100.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12]
 gi|293327591|dbj|BAJ02322.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12]
          Length = 205

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 8/191 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGLLIEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +T+ E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTSAEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A R++ E++ K   L S+++       +        P+  +N     AI+ L+ LGY   
Sbjct: 121 AERLLIEMRDK---LKSLMEASAGSEREFMLKTNYTPTKIVNTAEEDAIAVLLALGYKSA 177

Query: 176 QATTAVVSVLK 186
           QA+ +V +  K
Sbjct: 178 QASKSVSAAYK 188


>gi|282899464|ref|ZP_06307430.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195621|gb|EFA70552.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii
           CS-505]
          Length = 214

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 1   MIGKIKGNIEGL----YEDYVL-IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+       ++L ++V G+ Y +Y P R  + L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVAHIFTHYQIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+G  +A+ ++  +   ELV++II  N+ ++ Q PG
Sbjct: 61  ELPILYGFSSPAERDLFRHLLSVTGIGTAMAIALIDTLELPELVQAIISGNTTMLVQTPG 120

Query: 116 ISMKIASRIMTELKGKAI 133
           +  K A R+  ELKGK +
Sbjct: 121 VGKKTAERLCLELKGKLV 138


>gi|227825064|ref|ZP_03989896.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21]
 gi|226905563|gb|EEH91481.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21]
          Length = 201

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 12/179 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK--IGDFCTLFVETHMRQDQI 58
           MIG IKG ++ +  +Y  ++ QGV Y IY      S LG+  + D   ++    +R+D +
Sbjct: 1   MIGFIKGRVDTIGSNYAFVETQGVGYRIYM---NTSDLGRMVLDDKVKVYTYLAVREDAL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFLS      F  L +V G+G +VA G+LS     + + +I  ++ K + ++PGI  
Sbjct: 58  TLYGFLSQEAYGLFTKLITVSGIGPKVAQGILSASKVDDFLLAIKNRDVKFLTKLPGIGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQ 176
           K A R++ ELK        + + +   +  E       P+ A+   + AL +LGY Q++
Sbjct: 118 KTAERMLLELKDLTGPEGPLPESNGGFLAPEG------PASALTETMEALASLGYTQNE 170


>gi|161502989|ref|YP_001570101.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864336|gb|ABX20959.1| hypothetical protein SARI_01051 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 228

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 25/215 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 26  VIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPESGKEAIIFTHFVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 86  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 145

Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           A R++ E+K +           A+ L  +     +  + EQ            A++ALV 
Sbjct: 146 AERLIVEMKDRFKGLHGDLFTPAVDLVLMSPASPTSEDAEQ-----------EAVAALVA 194

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           LGY   +A+  V  V   +   A    +IR ALRA
Sbjct: 195 LGYKPQEASRMVSKVAHSD---ASSETLIRDALRA 226


>gi|62180473|ref|YP_216890.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613551|ref|YP_001587516.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224583600|ref|YP_002637398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|75482773|sp|Q57NA2|RUVA_SALCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045767|sp|A9MUX3|RUVA_SALPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767385|sp|C0Q2F4|RUVA_SALPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|62128106|gb|AAX65809.1| Holliday junction helicase subunit A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161362915|gb|ABX66683.1| hypothetical protein SPAB_01271 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224468127|gb|ACN45957.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322714948|gb|EFZ06519.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 203

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 25/215 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           A R++ E+K +           A+ L        +  + EQ            A++ALV 
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQ-----------EAVAALVA 169

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           LGY   +A+  V  + + +   A    +IR ALRA
Sbjct: 170 LGYKPQEASRMVNKIARPD---ASSETLIRDALRA 201


>gi|262373115|ref|ZP_06066394.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205]
 gi|262313140|gb|EEY94225.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205]
          Length = 201

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   L+ +I   +   + ++PG+  K 
Sbjct: 60  YGFSEAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +LS            +   + + P     A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKALSQSANSTSQTTTSQIQFMSNSP--VAEAEAALQSLGYKPIEAQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 178 VAAVKADYTESAD---IIRAALKSM 199


>gi|28493235|ref|NP_787396.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str.
           Twist]
 gi|28476276|gb|AAO44365.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str.
           Twist]
          Length = 222

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 112/206 (54%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +I  + G +E +    V++++ G+ +++  P    S   ++     L+    +R+D + L
Sbjct: 29  LIASLSGLLEAVRPGSVVVNMHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S L+   F  L ++ GVG RVA+ +LS +T  E+  +++  + K + ++ G+  K+
Sbjct: 86  YGFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKL 145

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +L GK   L+SV  +     N++Q       +     + AL+ LG+ + ++  A
Sbjct: 146 AGTIVLQLAGK---LTSVPLE-----NRKQEQAVDRSA---EIVQALIGLGWQRQESAAA 194

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V SVL+K++++    +I+R ALR ++
Sbjct: 195 VESVLEKDQSLT-MPEILRNALRYLA 219


>gi|50842639|ref|YP_055866.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           KPA171202]
 gi|282853888|ref|ZP_06263225.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139]
 gi|81611698|sp|Q6A8K8|RUVA_PROAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|50840241|gb|AAT82908.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           KPA171202]
 gi|282583341|gb|EFB88721.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139]
          Length = 201

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G +      +V++D  GV   + CP  T +   +I    +L     +R++ + L
Sbjct: 1   MISHFSGTVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K 
Sbjct: 60  YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ ELK K  +L+               H+ +   +       LV LG+    A  A
Sbjct: 120 AAKMILELKDKVAALAP-----RGASASGATHVAA--PWREQVAEGLVGLGWSTKDAEKA 172

Query: 181 V--VSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  LK+         ++R ALR+++
Sbjct: 173 VDKVVALKEADPAMSIGNLMRAALRSLA 200


>gi|261343863|ref|ZP_05971508.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM
           4541]
 gi|282568250|gb|EFB73785.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM
           4541]
          Length = 205

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L  IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPDIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--QAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +   +S ++    ++   S       A +AL+ LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNPISDIDLPSVKSKGPSQADIEAEAAAALIALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K +   +D   +IR ALRA
Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203


>gi|224025806|ref|ZP_03644172.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM
           18228]
 gi|224019042|gb|EEF77040.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM
           18228]
          Length = 198

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 17/208 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG +  +     +I+  G+ Y I   + T S + GK      L++   +R+D   
Sbjct: 1   MIEYIKGEVIEVVPAQAVIECNGIGYAISISLNTFSAIQGK--KEVKLYIYEAIREDAHI 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F+LL +V G+G   A  +LS ++ +EL   I   N K++  + GI +K
Sbjct: 59  LYGFYTRQERELFLLLITVSGIGGNTARMILSALSPSELCNVISSGNDKLLKTVKGIGLK 118

Query: 120 IASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            A RI+ +LK K     I  ++ V   ++  N E             A++AL  LG+ Q 
Sbjct: 119 TAQRIIVDLKDKIASTGIDTAAPVTSVIASANTEVYE---------EAVAALTMLGFAQA 169

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
            +   V  +LK+E ++  + ++I+LAL+
Sbjct: 170 PSQKVVGLLLKEEPDLPVE-KVIKLALK 196


>gi|116629085|ref|YP_814257.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|238853828|ref|ZP_04644193.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4]
 gi|311111127|ref|ZP_07712524.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22]
 gi|122273917|sp|Q045Q3|RUVA_LACGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116094667|gb|ABJ59819.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus gasseri
           ATCC 33323]
 gi|238833523|gb|EEQ25795.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4]
 gi|311066281|gb|EFQ46621.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22]
          Length = 192

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 14/193 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV++DV G+ Y I CP        +     T++VE  +R   I L
Sbjct: 1   MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPT---PYSYQENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L   V++     +         PS   +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGK---LGDYVKKSAVATD-------LTPSLQ-DALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIAD 193
              + K  +N AD
Sbjct: 167 TPKLAKLPENTAD 179


>gi|320528322|ref|ZP_08029484.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204]
 gi|320131236|gb|EFW23804.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204]
          Length = 198

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 18/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  +KG +     D+V+++   + Y + Y     L     + D   ++   H+ ++ + 
Sbjct: 4   MIAFVKGKVASYGADWVVVNCHDIGYQMAYPHPENL----HLNDEVFIYTYLHITENDMS 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  ++  F+ L SV+G+G + AMG+LS+     +V +I   +  ++ ++PGI  K
Sbjct: 60  LFGFESQDEKALFLKLISVKGLGPKTAMGMLSKCGYQSIVSAIESGDVTLLKKMPGIGAK 119

Query: 120 IASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            AS+I+ +LKGK +S+ +S  +QD            S P+    A+  L NLGY Q +  
Sbjct: 120 SASQIVLDLKGKLVSVPTSSPKQD----------TVSYPAEIREALDGLKNLGYKQGE-L 168

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
           +AV +++ +   +  + + ++L L+
Sbjct: 169 SAVANMMSENPGLTTE-KYLKLGLQ 192


>gi|309775420|ref|ZP_07670423.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916809|gb|EFP62546.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 193

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           MI  IKG I     D ++I+  G+ Y +Y   P+       ++     L+   H+R+D I
Sbjct: 1   MIAFIKGIIHSYSNDSLIIENNGIGYRVYVSNPMAV-----RLNAEVILYTYQHVREDAI 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF +  +R  F+ L SV+GVG + A+G+L    A  ++ +I   + KV+  +PGI  
Sbjct: 56  TLFGFPTMEERDLFLQLISVKGVGPKTALGMLGVCPAKNMIAAIENNDVKVLKGLPGIGA 115

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K AS+I+ +LKGK      +V++      KE   +       ++A+ AL  LGY      
Sbjct: 116 KTASQIVLDLKGK------LVEEVTELEIKENEQL-------LDALEALKALGY-----K 157

Query: 179 TAVVSVLKKE 188
            A ++ +KKE
Sbjct: 158 NAELNSIKKE 167


>gi|220910036|ref|YP_002485347.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425]
 gi|219866647|gb|ACL46986.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425]
          Length = 207

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 22/194 (11%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G I G+        + +DV GV Y +    R ++ L   G+   +F    +R+D
Sbjct: 1   MIGYLQGRIAGVQRGGNRTLLTLDVNGVGYDLQILPRLVNKLPPEGETLQMFTHLQVRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q+ L+GF    +R  F  L SV GVG ++A+ +L  +   ELV++I+  N++ +++ PG+
Sbjct: 61  QMILYGFAITAERDLFRQLISVSGVGPQLALALLEGMELAELVQAIVSGNTRTLSRTPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAIS-----ALVNL 170
             K A RI  ELK K                ++Q+ + ++PS   I A+       L+ L
Sbjct: 121 GSKTAERIALELKTKLAEW------------RQQSGLTTVPSAGPIAAVREEVELTLLAL 168

Query: 171 GYGQDQATTAVVSV 184
           GY   +   A+ +V
Sbjct: 169 GYSSTEVMQALQAV 182


>gi|156933560|ref|YP_001437476.1| Holliday junction DNA helicase RuvA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166230549|sp|A7MEA2|RUVA_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|156531814|gb|ABU76640.1| hypothetical protein ESA_01380 [Cronobacter sakazakii ATCC BAA-894]
          Length = 203

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLEAGGVGYEVHMPMTCFYELPETGKEAVVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        ++      A++ALV+LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V + +   A    +IR ALRA
Sbjct: 181 VSKVAQAD---ASSETLIREALRA 201


>gi|139438977|ref|ZP_01772437.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC
           25986]
 gi|133775688|gb|EBA39508.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC
           25986]
          Length = 206

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 91/193 (47%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        ++DV GV + +     T + L   G    L+    +R+D + L
Sbjct: 1   MISQLHGTLVEATMSSAVVDVSGVGFELGISGSTAATLPTPGGEVRLYTRMQVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV GVG R+A+ VLS  T  +L   ++ ++ K +A++PG+  K 
Sbjct: 61  FGFASKDERTMFDRLVSVSGVGPRLALAVLSTYTVGQLYSLVMAEDDKGMAKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK         V  D            + PS   +A +AL+++G+   +   A
Sbjct: 121 AQRLILELKSTFAKDKGFVPVDAIPGQVAMPVPAAAPSAIDDARAALLSMGFSPQETDVA 180

Query: 181 VVSVLKKEKNIAD 193
           +     ++  + D
Sbjct: 181 LSGYDGQDMRVED 193


>gi|329903093|ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548502|gb|EGF33171.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 192

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +   + T   L  +G+   L  +  +R+D   L
Sbjct: 1   MIGRLSGTLLEKNPPQLLVDCHGVGYEVGVSMSTFYNLPALGEKIVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + GVG R+A+ +LS ++  EL ++I LQ +  + ++PG+  K 
Sbjct: 61  FGFGTAEERNVFRQLIKIAGVGPRMALAILSGMSVAELAQAITLQETGRLTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+  V        ++P  + + ++AL+ LGY   +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGIVGG-----VALPDGSGDILNALLALGYSDKEAMLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V      ++D    I+LAL+A+S
Sbjct: 169 MKQV-PAGSGVSDG---IKLALKALS 190


>gi|168238525|ref|ZP_02663583.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736016|ref|YP_002114930.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204930984|ref|ZP_03221810.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|229560126|sp|B4TYR8|RUVA_SALSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194711518|gb|ACF90739.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288628|gb|EDY28003.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320028|gb|EDZ05233.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322616895|gb|EFY13803.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618133|gb|EFY15025.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625804|gb|EFY22623.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626256|gb|EFY23066.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632670|gb|EFY29415.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639014|gb|EFY35707.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640454|gb|EFY37107.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644219|gb|EFY40764.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649542|gb|EFY45974.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655449|gb|EFY51757.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660228|gb|EFY56466.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662909|gb|EFY59116.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668094|gb|EFY64253.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674146|gb|EFY70240.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675500|gb|EFY71574.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683086|gb|EFY79102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686780|gb|EFY82758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195329|gb|EFZ80509.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199221|gb|EFZ84316.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204054|gb|EFZ89069.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207477|gb|EFZ92425.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210663|gb|EFZ95541.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217461|gb|EGA02180.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221952|gb|EGA06342.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224438|gb|EGA08726.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231483|gb|EGA15596.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235925|gb|EGA20004.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240495|gb|EGA24538.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245387|gb|EGA29387.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247807|gb|EGA31745.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253606|gb|EGA37434.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255035|gb|EGA38823.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260268|gb|EGA43889.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266859|gb|EGA50345.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269065|gb|EGA52521.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 203

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L   +    +  V    A   S  +    A++ALV LGY   +A+ 
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPGSEDA-EQEAVAALVALGYKPQEASR 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + + +   A    +IR ALRA
Sbjct: 180 MVSKIARPD---ASSETLIRDALRA 201


>gi|237802930|ref|YP_002888124.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804852|ref|YP_002889006.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273152|emb|CAX10065.1| holliday junction DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274164|emb|CAX10958.1| holliday junction DNA helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 200

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R ++     +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176
            A ++M +LK K  +L  +  ++   V    A+     SF    I AL+NLG+ +   D+
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
             T  V  L +E ++A+   ++ +ALR
Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198


>gi|238063870|ref|ZP_04608579.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp.
           ATCC 39149]
 gi|237885681|gb|EEP74509.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp.
           ATCC 39149]
          Length = 200

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +++V GV   ++C   TL+ L +IG    L     +R+D + L
Sbjct: 1   MIASVRGTVTATGPDHAVVEVGGVGLAVHCAPGTLAEL-RIGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +Q F LLQ+  GVG R+A  VL+  T   + ++I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELK 129
           A R++ EL+
Sbjct: 120 AERLVLELR 128


>gi|237739486|ref|ZP_04569967.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31]
 gi|229423094|gb|EEO38141.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31]
          Length = 194

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 1/136 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    +  +G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKID-LGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ + +L  + G+G  +A+ VLS  +  ++VE I   +   + ++P +  K 
Sbjct: 60  IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLS 136
           A  I+ +LK K  +L+
Sbjct: 120 AQIIILDLKAKLKNLT 135


>gi|134098596|ref|YP_001104257.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008207|ref|ZP_06566180.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|166200258|sp|A4FBA7|RUVA_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|133911219|emb|CAM01332.1| Holliday junction DNA helicase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 200

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+V GV   ++    TL+ L + G+   L+    +R+D + L
Sbjct: 1   MIASVRGPVLSVGLDHAVIEVGGVGMAVHATPATLAGL-RRGEEARLWTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+  GVG R+A+  L+ +   +L  ++   N   + Q+PG+  K 
Sbjct: 60  YGFADAEARDLFGLLQTASGVGPRLALATLAVLAPDQLCHALSDGNITTLTQVPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++          ++ +               ALV LG+   QA  +
Sbjct: 120 AERLILELRDKVGTVAGTAGAGAQAPDRGRVR--------SEVSEALVGLGFSAKQAEQS 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL  +  ++D S ++R AL A+
Sbjct: 172 VEAVLAADGPVSDTSAVLRKALAAL 196


>gi|332978537|gb|EGK15246.1| crossover junction ATP-dependent DNA helicase RuvA [Psychrobacter
           sp. 1501(2011)]
          Length = 210

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 110/214 (51%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +  L      ++   GV Y +  P+    C  ++    +++   H+R+D   
Sbjct: 1   MIGSIEGRVCHLAAPVACIMTASGVGYEVELPLPDF-CQLQLDATVSVWTHLHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R  F  L  + GVGA++A+ ++S ++A EL +++   N   + ++PGI  K
Sbjct: 60  LYGFIKHQERDVFRQLIRINGVGAKMALAMMSTMSAPELKQAVETDNDVALTRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQ--AHICSMPSFAI---NAISALVNLGYGQ 174
            A R++ ELKGK  ++ +        + +EQ  A I    S  +      SAL++LGY  
Sbjct: 120 TAQRLLIELKGKFDNIET-----SGGLFEEQGGATISLAGSEGVILAEVESALISLGYRD 174

Query: 175 DQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
            +A  A+ +  + E  + I D   +++L L+ +S
Sbjct: 175 KEAQRAIKAARETEAGQTIVDTQSLLKLTLQQLS 208


>gi|296117790|ref|ZP_06836373.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969021|gb|EFG82263.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 211

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+  GV Y      +TL+ L + GD   +     +++D   L
Sbjct: 1   MIASLSGEVLSIALDHAVIECGGVGYQFLATPKTLATLIR-GDHARVMTSMTVKEDARTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D DR  F  LQ+V G+G ++A+  LS + A E+  +I   ++K +  IPG+  ++
Sbjct: 60  YGFTNDEDRAMFHQLQAVSGLGPKLAIACLSVLDAREIAVAISNGDAKKLQTIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAI--NAISALVNLGYGQDQ 176
           + R+  ELK K   +++ +    +  ++  A    +P  S AI    + ALV LG+ +  
Sbjct: 120 SERMALELKDK---VNNFIGTPDASDSETTATQTGLPVGSGAIVDTVVEALVGLGFTEKA 176

Query: 177 ATTAVVSVLKKEKNIA--DDSQIIRLALRAIS 206
           A   V S + + K     + + ++R +L A+S
Sbjct: 177 ARPVVESHVAESKTPEKLETATVLRASLSALS 208


>gi|325672616|ref|ZP_08152312.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus
           equi ATCC 33707]
 gi|325556493|gb|EGD26159.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus
           equi ATCC 33707]
          Length = 201

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + GD   L     +R+D + L
Sbjct: 1   MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM +L+ +    L +++   N   + ++PGI  + 
Sbjct: 60  YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++  V  D+           S        + AL  LG+  + A  A
Sbjct: 120 AERMVVELRDKVEAVA--VTGDLPGAGA----ATSASIVRDQVVEALTGLGFKLEHAEKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
             +V+  +   A  S ++R AL
Sbjct: 174 TDTVVAADPE-APTSTVLRSAL 194


>gi|37199217|dbj|BAC95049.1| holliday junction resolvasome, DNA-binding subunit [Vibrio
           vulnificus YJ016]
          Length = 206

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 3   VIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 63  YGFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +    S+    D+     + A +     S  S    A+SAL+ LGY   Q
Sbjct: 123 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQ 179

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K +       Q+IR AL+++
Sbjct: 180 ASKVVSQIAKPDMT---SEQLIREALKSM 205


>gi|262066188|ref|ZP_06025800.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum
           ATCC 33693]
 gi|294783453|ref|ZP_06748777.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA]
 gi|291380095|gb|EFE87613.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum
           ATCC 33693]
 gi|294480331|gb|EFG28108.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA]
          Length = 194

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 1/136 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    +  +G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKID-LGNKYKFYIYNHIKEDAYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ + +L  + G+G  +A+ VLS  +  ++VE I   +   + ++P +  K 
Sbjct: 60  IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLS 136
           A  I+ +LK K  +L+
Sbjct: 120 AQIIILDLKAKLKNLT 135


>gi|300727799|ref|ZP_07061181.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14]
 gi|299774952|gb|EFI71562.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14]
          Length = 205

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 13/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG +  L     +++  GV Y +   + T S +    D   L+V   +    R D
Sbjct: 1   MIEYIKGELTELTPALAVVEAAGVGYALNISLNTYSAIQGKKD-VKLYVHEALVAGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R+ + LL +V GVGA  A  +LS ++  EL   I   N K++  + GI
Sbjct: 60  SFTLYGFFTKQERELYRLLITVSGVGANTARMILSSLSPVELCTVISSGNDKMLKSVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQ 174
            +K A RI+ +LK K ISL    +     +     H  ++ +  +   A++AL  LG+  
Sbjct: 120 GLKTAQRIIVDLKDKIISLGIATE-----LPSNAGHATAIINNDVKDEAVAALTMLGFSP 174

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             +   V ++L    ++  + Q+++LAL+ I
Sbjct: 175 APSAKVVTAILTDSPDMPVE-QVVKLALKQI 204


>gi|282878437|ref|ZP_06287223.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC
           35310]
 gi|281299423|gb|EFA91806.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC
           35310]
          Length = 204

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 24/216 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  I+G +  L     +++  GV Y +   + T S + GK      L+V     T  R 
Sbjct: 1   MIEYIRGELTELTPALAVLEAAGVGYGLNISLNTYSAIQGK--KEVKLYVHESLVTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D    +GF S  +R+ + LL +V GVGA  A  +LS ++  EL   I   + +++  + G
Sbjct: 59  DNFTFYGFFSKQERELYRLLITVSGVGANTARMILSTLSPAELCNVIANGDERMLKAVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVN 169
           I +K A RI+ +L+ K +S         S +  E  H+ S P+ A++      A+SAL  
Sbjct: 119 IGLKTAQRIIVDLRDKIVS---------SGIATE-LHVSSEPATAVDASIRDEAVSALTM 168

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           LG+    +   V  +LK + ++  + Q+++LAL+ I
Sbjct: 169 LGFSPAPSAKVVEGILKSDPSLPVE-QVVKLALKQI 203


>gi|313892063|ref|ZP_07825661.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII
           345-E]
 gi|329120927|ref|ZP_08249559.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister
           micraerophilus DSM 19965]
 gi|313119515|gb|EFR42709.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII
           345-E]
 gi|327471386|gb|EGF16837.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister
           micraerophilus DSM 19965]
          Length = 200

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 12/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG +    +    ++  G+ Y I+        L ++G+   L+    +R+D I+L
Sbjct: 1   MIGYIKGTVTTFEKQACFVETSGIGYRIFISDIDKEKL-RVGENIKLYTYMAVREDAIQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+       F++L SV  +G +VAMG+LS I       +I  ++  V+ ++PGI  K 
Sbjct: 60  YGFIEKESYDLFLILISVSKIGPKVAMGILSSIDINSFCNAIQKKSISVLTKLPGIGKKT 119

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELK K A+S    V+ D      E +   ++P     A+  L +LGY Q+    
Sbjct: 120 AERLVLELKDKIAVSNVENVESDT-----ESSTSGTVPEN--EAVMILKSLGY-QEYEIM 171

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
            V+  +KKE    D  +++R  L
Sbjct: 172 PVLKSIKKE--FKDPMELVRAVL 192


>gi|281422792|ref|ZP_06253791.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205]
 gi|281403160|gb|EFB33840.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205]
          Length = 204

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  I G++  L     +++  GV Y +   + T + + GK      L+V     T  R 
Sbjct: 1   MIEYIHGDLTELTPALAVVETAGVGYGLNISLNTYTAIQGK--QEVKLYVHEVLVTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   LFGF +  +R+ + LL +V GVG   A  +LS ++  EL E I   N K++  + G
Sbjct: 59  DSFTLFGFATKQERELYRLLITVSGVGGNTARMILSSLSPRELCEIISTGNDKMLKTVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I +K A RI+ +LK K +SL    +   S  N     +         A+SAL  LG+   
Sbjct: 119 IGLKTAQRIIIDLKDKIVSLGIADELPASGGNV----VMVNNDVKDEAVSALTMLGFSPA 174

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +   VV +LK + ++  + Q+++LAL+ I
Sbjct: 175 PSAKVVVDILKAQPDLPVE-QVVKLALKQI 203


>gi|154149661|ref|YP_001403279.1| Holliday junction DNA helicase RuvA [Candidatus Methanoregula
           boonei 6A8]
 gi|153998213|gb|ABS54636.1| Holliday junction DNA helicase RuvA [Methanoregula boonei 6A8]
          Length = 201

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G      + +V++DV G+ Y ++ P   +  +   G    L     +R+D I L
Sbjct: 1   MIAYLEGTPAATGDRWVVLDVNGIGYRVHVPEPEVREIAGAGTKVKLHTYMAVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + + + F ++  V G+G ++A+ +LS+I+  + V +I+  + K + +I GI  K 
Sbjct: 61  YGFLHESELELFTVIIGVSGIGPQIALNILSQISLEDFVLAILSGDEKSLTRISGIGPKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A R++ EL+ K           M  V     H  +    A   +A SALV+LG+ +  + 
Sbjct: 121 AKRLILELRDK-----------MKKVQDAMTHTPAGRQDATLRDAASALVSLGFAEAASY 169

Query: 179 TAVVSVLKKEKNIADDS--QIIRLALR 203
            AV S     + +A  +  +I++ ALR
Sbjct: 170 DAVASA---ARGLAAPTVQEIVKAALR 193


>gi|78187612|ref|YP_375655.1| Holliday junction DNA helicase RuvA [Chlorobium luteolum DSM 273]
 gi|123743607|sp|Q3B219|RUVA_PELLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78167514|gb|ABB24612.1| Holliday junction DNA helicase subunit RuvA [Chlorobium luteolum
           DSM 273]
          Length = 200

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 7/186 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +  +  +++V G+ Y       T   L + G+   L+    +R+D ++L
Sbjct: 1   MYAYFRGRVVSVLPEEAVLEVSGIAYRFLISTGTSRSLPQAGNEAILYTHLSVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++Q F LL  V GVG ++A+ VLS +   E+ E+I+    + +  + G+  K 
Sbjct: 61  YGFSSEEEKQLFRLLLLVSGVGPKLALAVLSGLPVAEVHEAILANAPERLFGVTGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + LS            +    C +   A N   AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDRILKLSPPGAAATPAGAVQ----CGIREDATN---ALLTLGFSRTAAQQA 173

Query: 181 VVSVLK 186
           V  VL+
Sbjct: 174 VAGVLE 179


>gi|312143984|ref|YP_003995430.1| Holliday junction DNA helicase RuvA [Halanaerobium sp.
           'sapolanicus']
 gi|311904635|gb|ADQ15076.1| Holliday junction DNA helicase RuvA [Halanaerobium sp.
           'sapolanicus']
          Length = 200

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L     +IDV GV Y     +     L  +GD   L++ T++R+D ++L
Sbjct: 1   MIGFLEGELIYLEAGQAIIDVNGVGY--ETELAGFDDLPTVGDDIELYIYTYVREDALKL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F S  D++ F +L +V G+G +  + +++ + A   + +I+ +N  V+ +I GI  K 
Sbjct: 59  FAFPSRKDKELFEILITVNGIGPKAGLNIINTMPADRFISAIMQENELVLKKISGIGPKT 118

Query: 121 ASRIMTELKGK 131
           A R++ EL+GK
Sbjct: 119 AQRLILELQGK 129


>gi|226329884|ref|ZP_03805402.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198]
 gi|225200679|gb|EEG83033.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198]
          Length = 206

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG+I+G I       VLI+   GV Y I  P+     L  IG    ++ +  +R+D   
Sbjct: 1   MIGRIRGIILEKQPPVVLIEAGSGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  ++   + ++PG+  K
Sbjct: 61  LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176
            A R++ E+K +   L+  + ++ S +   ++     P  A     A +AL+ LGY   +
Sbjct: 121 TAERLVVEMKDRFKGLNGDLFEN-SDIELPESTPSKAPKAADIEAEASAALIALGYKPQE 179

Query: 177 ATTAVVSVLKKEKNIADDSQ-IIRLALRA 204
           A   +  V K    +  DS+ +IR ALRA
Sbjct: 180 AAKMISKVAK----LGTDSETLIREALRA 204


>gi|154493758|ref|ZP_02033078.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC
           43184]
 gi|154086508|gb|EDN85553.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC
           43184]
          Length = 197

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  IKG I  L    ++++  G+ Y +   + T +   GK      ++V   +R+D   
Sbjct: 1   MIEYIKGEIVELTPARMILECAGIGYELNISLNTYTFYNGK--PTGKIYVYEVIREDAHL 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    +R+ F++L SV GVG   A  +LS ++ +EL+  I  +N   +  + GI +K
Sbjct: 59  LFGFAGKDERELFLMLTSVSGVGPNTARMILSSLSPSELIRVIADKNETALTSVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LK K   +  +       V    + + +  +    A++ALV LG+ +  +  
Sbjct: 119 TAQRILVDLKNKVKPIEGM------TVTGGSSSVAASGAVTEEAVAALVMLGFQKAASQK 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV  +LK    +A + Q+I+ ALR
Sbjct: 173 AVNLILKGSPALAVE-QVIKTALR 195


>gi|254496522|ref|ZP_05109393.1| holliday junction DNA helicase [Legionella drancourtii LLAP12]
 gi|254354261|gb|EET12925.1| holliday junction DNA helicase [Legionella drancourtii LLAP12]
          Length = 199

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G+I   ++   L+ +V GV Y +   + T   L  +     L + T +R+D + 
Sbjct: 1   MIGWLDGHIVDKHQPGKLVLNVNGVGYDVETSLNTFFQLDTLSGSIGLHIHTVVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVG ++A+ +LS IT  E ++ I  + +  + ++PGI  K
Sbjct: 61  LYGFLDKQERALFRALIKVNGVGPKMAIAILSSITPNEFIQCIKQEKAAFLTKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++  +I   S    D+S          ++      A+SAL  LGY   +A  
Sbjct: 121 TAERLVIEMR-DSIKQFSEPASDLSL------KPINLIRGQDEAVSALEALGYKPQEALK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  +    K+     Q+IR AL+ +S
Sbjct: 174 AVNKLDDGHKSC---EQLIREALQILS 197


>gi|38233961|ref|NP_939728.1| Holliday junction DNA helicase motor protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|81564836|sp|Q6NGX4|RUVA_CORDI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|38200223|emb|CAE49907.1| holliday junction DNA-helicase [Corynebacterium diphtheriae]
          Length = 203

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 6/202 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +E +     +I+  GV Y +     TL  L + G+   +     +R++   L
Sbjct: 1   MIVSLRGTVESIGLGSAVIECNGVGYEVLAAPTTLGRLTR-GEQARVLTTMVVREESQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  R+ F+LLQSV G+G ++A+   S  T  ++   I   ++K + +IPG+  ++
Sbjct: 60  YGFTDDASRRMFVLLQSVSGLGPKLALAAQSVFTTEDIARHIAGGDAKALQKIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +  +      +    + Q  I    +     + ALV LG+ +  A   
Sbjct: 120 AERMIVDLKDKVVGFND----GIPAAAQPQLSIAVDQAVQEQVLEALVGLGFSEKIALPV 175

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +  VL+    ++  SQ +R AL
Sbjct: 176 LSRVLRDSPELS-KSQALRAAL 196


>gi|269126344|ref|YP_003299714.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM
           43183]
 gi|268311302|gb|ACY97676.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM
           43183]
          Length = 202

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D+ ++DV GV   + C   TL+ L ++G+  T+     +R+D + L
Sbjct: 1   MIAFVSGKVAAAGPDHAVVDVGGVGLTLQCTPATLAGL-RVGEQVTVPTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R  F LLQ+  GVG R+A+ +L+  +   L  ++   +   + ++PGI  K 
Sbjct: 60  FGFADDDERAVFELLQTASGVGPRLALAMLAVHSPNALRRAVAAGDVAALTKVPGIGKKG 119

Query: 121 ASRIMTELK 129
           A RI+ ELK
Sbjct: 120 AQRIVLELK 128


>gi|297626360|ref|YP_003688123.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922125|emb|CBL56693.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 203

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 106/208 (50%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +  +  ++++IDV GV + +     T S L + G   T+F    +R+D ++L
Sbjct: 1   MIAQLHGKVAAIGANWLVIDVAGVGFQVSTTPNTTSAL-RTGQTATVFTSLVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F L ++  GVG ++A+ ++S +T  E   ++  ++   +  +PGI  K 
Sbjct: 60  YGFGGTDERDCFELCRTASGVGPKLALAIVSVLTPEEFATAVRTEDLPRLCTVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK +  +L       ++  N   +     P++    ++ L +LG+    A  A
Sbjct: 120 AQKIVIELKDRVDALF------VAPTNGSASVAPVTPAWQEQVMAGLESLGWSSRDAEAA 173

Query: 181 --VVSVLKKEKNIADDSQIIRLALRAIS 206
              V+ L +E   A  + +++ AL +++
Sbjct: 174 CETVAPLAEEDPEATVAALMKAALASLA 201


>gi|108804162|ref|YP_644099.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter
           xylanophilus DSM 9941]
 gi|123069128|sp|Q1AWE1|RUVA_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|108765405|gb|ABG04287.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter
           xylanophilus DSM 9941]
          Length = 196

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     + V++D  GV Y    P+ TL  L  +G+ C +     +R+D + L
Sbjct: 1   MIDRLRGQLVEKDPEGVVVDCGGVGYRAAAPLSTLRALPAVGEECVVHTRMVVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L SV  VG R+A+ VLS +T  +++E+    +    A +PG+  K 
Sbjct: 61  FGFATREEREAFDALTSVSKVGPRLALAVLSAMTPGQMMEAAARGDVHRFAAVPGLGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+G+ ++ +       +              F + A  AL  LGY  ++A  A
Sbjct: 121 AERLVLELRGRELAAAGGGGGVAAGEGDG--------PF-MEAREALTGLGYSLEEAERA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +E       Q I+ ALR I
Sbjct: 172 LRDVPPQETV----EQYIKAALRKI 192


>gi|282864188|ref|ZP_06273244.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE]
 gi|282560675|gb|EFB66221.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE]
          Length = 208

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 19/215 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  +  +I+V G+   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALTPNTAVIEVGGIGMALQCTPGTLSGL-RVGQEARLAASLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRIAVATGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ ELK   G+ +  + + QQ +         + S  S+     +AL+ LGY   +A
Sbjct: 120 AQKLLLELKDRLGEPVG-AHIGQQGIGTA------VSS--SWRDQLQAALIGLGYATREA 170

Query: 178 TTAVVSVLKK-EKNIADDS-----QIIRLALRAIS 206
             AV +V  + E  +AD +     Q++R AL++++
Sbjct: 171 DEAVSAVTPQAEAAVADGAQPPVPQLLRAALQSLN 205


>gi|152980261|ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthinobacterium sp.
           Marseille]
 gi|166230559|sp|A6SUQ3|RUVA_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151280338|gb|ABR88748.1| RuvA holliday junction DNA helicase [Janthinobacterium sp.
           Marseille]
          Length = 191

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +  P+ T   L  +GD   L     +R+D   L
Sbjct: 1   MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  + G+GAR A+ +LS ++  +L ++I +Q +  + +IPGI  K 
Sbjct: 61  FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+           S      + ++AL+ LGY   +A  A
Sbjct: 121 AERLLL-------ELKGKLGADLGVAGAVATDATS------DILNALLALGYSDKEAMLA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK+       S  I+LAL+++S
Sbjct: 168 ----LKQVPAGTGVSDGIKLALKSLS 189


>gi|34556867|ref|NP_906682.1| Holliday junction DNA helicase RuvA [Wolinella succinogenes DSM
           1740]
 gi|44888365|sp|Q7MA70|RUVA_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34482582|emb|CAE09582.1| PUTATIVE HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes]
          Length = 189

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KGNIE      + ++V GV Y I+  I T + LG+      L +   +R++   L
Sbjct: 1   MIVALKGNIEKKEPTRLWLEVGGVTYEIFISIHTSAALGE--KEARLLITHLIREEAWSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +++ F  L  + GVG + A+ +LS  T     + I  Q+ K + ++PGI  K 
Sbjct: 59  YGFAEEAEKRVFDTLIKINGVGPKAALAILSTYTPPTFAQIIQAQDVKALQRVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           A RIM EL G ++SL    +     V +E
Sbjct: 119 AGRIMVELAGFSLSLQEGSKASTPPVFEE 147


>gi|217967994|ref|YP_002353500.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM
           6724]
 gi|217337093|gb|ACK42886.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM
           6724]
          Length = 192

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 21/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
            +  I G +  ++ D ++ID     + IY      S L + + +   L++   + +D I+
Sbjct: 3   FLNHIYGKLLKIHGDSLIIDTGNFGFKIYVSKNLTSKLSEELNNKILLYIAEVIEKDGIK 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            FGFLS+ +R  F  L+++ GVG ++A+ ++S ++  E  E I  ++   +  +PG+  K
Sbjct: 63  FFGFLSEEERDLFERLKNITGVGIKIALRIVSAMSPKEFYEVIEKEDLNALLMVPGVGKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           I  +I  E+KG  I      ++D+                       L+NLGY +++   
Sbjct: 123 ITQKIFLEIKG-VIPKREHKEEDIIK-------------------DTLLNLGYKKEEIEV 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  + K+ K++ +  +IIR ALR +S
Sbjct: 163 VMKEIRKEFKDLDNLEEIIRFALRKLS 189


>gi|296139644|ref|YP_003646887.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM
           20162]
 gi|296027778|gb|ADG78548.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM
           20162]
          Length = 199

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++  GV Y +     T   L + G   +L     +R+D + L
Sbjct: 1   MIASLRGEVRHIGLDHVVVECAGVGYKVLVAPATAGALTR-GSEGSLLTSMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F LLQ+VQGVG R+AM  ++ +   ++  +I   + K +  IPGI  ++
Sbjct: 60  YGFTDSPQQELFHLLQTVQGVGPRLAMAAIAVLEPAQMQSAIASGDIKTLCLIPGIGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQ 176
           A RI  ELK K  + S+ V          QA   + PS   A   + AL  LG+   Q
Sbjct: 120 AERIHIELKDKVAAPSTSVG---------QAGTSNAPSGGTAQQLLDALEGLGFTPKQ 168


>gi|168333338|ref|ZP_02691622.1| Holliday junction DNA helicase RuvA [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 183

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 24/195 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQI 58
           MIG + G +   +E+ +L++V G+ Y I+         GKI D     +++  ++++D  
Sbjct: 1   MIGYLVGTVAERFENIILLEVNGIGYEIFM-------XGKI-DVAEVKIYIYENIKEDAY 52

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF+S  +++ F  L SV G+G + A  ++  +    LVE I+ +++  I ++PGI  
Sbjct: 53  DLYGFVSLAEKELFKKLISVNGIGPKAAAALIV-LHGINLVECIVNEDASEITRVPGIGA 111

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           KIASR++ ELK K +S    +++ +     E+            A +ALV LGY + QA 
Sbjct: 112 KIASRLILELKDK-LSAFKTLEKRVVVDGLEE------------ATAALVALGYNKKQAA 158

Query: 179 TAVVSVLKKEKNIAD 193
            AV +V     +I D
Sbjct: 159 RAVNAVYNYSDSIED 173


>gi|84496343|ref|ZP_00995197.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649]
 gi|84383111|gb|EAP98992.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649]
          Length = 201

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D V+I+V GV  +++   RT   + ++G   T+     +R+D + L
Sbjct: 1   MIASLSGRVAHVGLDRVVIEVGGVGMLVHTTPRTAGEV-RMGQDVTVSTTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  +Q+V GVG R+A+ +LS +T   +  ++   +   + +IPG+  K 
Sbjct: 60  FGFGSPSERDMFETVQTVSGVGPRLALAMLSVLTPDAVSAALRAGDLATLTKIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K    S     D   V    A +       +    ALV LG+   QAT A
Sbjct: 120 AERLVLELKDKVGMPSGSPGAD---VTPSAASLGDAKRDQVA--EALVGLGWSAKQATDA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V SV       A  + ++R+ALR +
Sbjct: 175 VASVSAAADPEASVAALLRMALREL 199


>gi|253688206|ref|YP_003017396.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495651|sp|C6DFF1|RUVA_PECCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|251754784|gb|ACT12860.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 205

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA----ISALVNLGYGQDQ 176
           A R++ E+K +   LS  +   +S +    A   S  S A +      +ALV LGY   +
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDI--PLASPASAESRASDPEAEAAAALVALGYKPQE 178

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A+  +  + + E   AD   +IR ALRA
Sbjct: 179 ASRMISKIARPE---ADCETLIRDALRA 203


>gi|255348878|ref|ZP_05380885.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70]
 gi|255503418|ref|ZP_05381808.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70s]
 gi|255507096|ref|ZP_05382735.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           D(s)2923]
 gi|289525546|emb|CBJ15024.1| holliday junction DNA helicase [Chlamydia trachomatis Sweden2]
 gi|296435106|gb|ADH17284.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/150]
 gi|296438826|gb|ADH20979.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/11023]
          Length = 200

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R L  L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHIDESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRDERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176
            A ++M +LK K  +L  +  ++   V    A+     SF    I AL+NLG+ +   D+
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
             T  V  L +E ++A   +++ +ALR
Sbjct: 175 MMTEAVKELSEEASVA---ELLPIALR 198


>gi|268318974|ref|YP_003292630.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           johnsonii FI9785]
 gi|262397349|emb|CAX66363.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           johnsonii FI9785]
          Length = 192

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 14/193 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y+++DV GV Y I CP        +      ++VE  +R   I L
Sbjct: 1   MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSYDENQP---AAIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK              V K  A     PS   +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKL----------GDYVKKSTAAADLTPSLQ-DALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIAD 193
              + K  +N AD
Sbjct: 167 TPKLAKLPENTAD 179


>gi|317472815|ref|ZP_07932126.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA]
 gi|316899734|gb|EFV21737.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA]
          Length = 198

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +     +++  G+ Y I  P       G IG    ++   H+R+D I L
Sbjct: 1   MISYIKGILVSMTPGGAVVENNGIGYDIMMPAGQ-EFPGGIGQEVRIYTHMHVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F LL  V G+G +V + VLS ++  EL  +++  +SK I++ PG+  K 
Sbjct: 60  FGFRTKEELEAFELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +++ EL+ K +      Q + M         + +  S A+ A   LV+LGY + +A  
Sbjct: 120 AKKLILELRDK-LDFEEFEQAEPMDFA----GDLPAEDSVAVTA-QGLVSLGYSRSEAMM 173

Query: 180 AVVSVLKKEKNIADDS--QIIRLAL 202
           A+    KK +N A+ S  Q+++ AL
Sbjct: 174 AI----KKVENAAEYSPEQLLKKAL 194


>gi|291513714|emb|CBK62924.1| Holliday junction DNA helicase subunit RuvA [Alistipes shahii WAL
           8301]
          Length = 193

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 12/201 (5%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG +  +   Y +IDV GV Y ++  + T S +    +   L+V   +R+D   L+GF 
Sbjct: 5   IKGTVAEVAPAYAVIDVGGVGYYLHISLETYSAIEHETE-TRLYVHYVVREDAQLLYGFS 63

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +R+ F LL SV GVG   A  +LS  +  EL   I   N+ ++  + G+ +K A +I
Sbjct: 64  TKAERELFRLLISVSGVGGNTARMILSTYSPRELQGIITAGNAVLLKNVKGLGLKTAQKI 123

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + EL GK ++            +   A   +  SF   A++AL  LG+ +  A   +  V
Sbjct: 124 IVELSGKLMA---------PGADDGGAQPGAGGSFD-EALAALSMLGFARAPAEKVLRGV 173

Query: 185 LKKEKNIADDSQIIRLALRAI 205
           L +E   A   ++IR+AL+ +
Sbjct: 174 L-RESPAAPVEELIRMALKKL 193


>gi|182418560|ref|ZP_02949841.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521]
 gi|237668331|ref|ZP_04528315.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377563|gb|EDT75114.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521]
 gi|237656679|gb|EEP54235.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 200

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 107/202 (52%), Gaps = 9/202 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG   G+ +DY++++  G+ Y I+    T+S + + G+   L+V+  +R+D I L+GF 
Sbjct: 5   IKGKYMGMNKDYIVVENSGIGYKIFTSGATMSSVPECGEEVILYVDQIVREDFIGLYGFD 64

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S  +   F LL +V GVG + A+ +LS      L  +I+  + K I +  GI  K A+RI
Sbjct: 65  SKEELAMFKLLLTVNGVGPKAALSLLSISRLNNLKYAIMTGDEKHICRGVGIGKKTAARI 124

Query: 125 MTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183
           + ELK K      + V  D +  N  + ++ ++       +SAL+ LGY + ++   + +
Sbjct: 125 ILELKDKLQPDELLDVAVDSNKDNNGENNLMAVSE----VLSALIALGYSEKESEKVLKT 180

Query: 184 VLKKEKNIADDSQIIRLALRAI 205
           + K E        +I+ AL+A+
Sbjct: 181 IDKTETV----ENMIKNALKAL 198


>gi|315037644|ref|YP_004031212.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL
           1112]
 gi|325956129|ref|YP_004286739.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus
           30SC]
 gi|312275777|gb|ADQ58417.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL
           1112]
 gi|325332694|gb|ADZ06602.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus
           30SC]
 gi|327182937|gb|AEA31384.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL
           1118]
          Length = 195

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 13/179 (7%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           Y+++DV GV Y +Y P       G+      +++E  +R   I L+GF S  D+  F+ L
Sbjct: 16  YIVVDVNGVGYKVYSPTPFAYTQGQK---AKVYIEQVVRDTGITLYGFQSQDDKGLFLKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV G+G + AM +++   +  L E+I     K + + PG+  K AS+I+ +LKGK   L
Sbjct: 73  LSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---L 129

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
              V +     N E+       S A+N A+ AL+ LGY Q +       +++ + + AD
Sbjct: 130 GDYVARLDRKDNDEEI------SPALNDALLALIALGYTQKEVDRITPKLIEVDADTAD 182


>gi|260772519|ref|ZP_05881435.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP
           69.14]
 gi|260611658|gb|EEX36861.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP
           69.14]
          Length = 205

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       ++I+V GV Y +  P+     L  I +   ++    +R+D   L
Sbjct: 1   MIGRLRGLLIEKQPPQIVIEVNGVGYEVQMPMSCFYELPNINEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLGILSGMTASQFVACVEREDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-----INAISALVNLGYGQD 175
           A R++ E+K +     S    D+     + A +   P  A       AISAL++LGY   
Sbjct: 121 AERLLVEMKDRLKGWGS---GDLFTPATDAAPLDHSPVTAEQNAQEEAISALLSLGYKPV 177

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           QA+  VVS + K    ++  Q+IR AL+++
Sbjct: 178 QASK-VVSQMAKPGMTSE--QLIREALKSM 204


>gi|305665237|ref|YP_003861524.1| Holliday junction DNA helicase motor protein [Maribacter sp.
           HTCC2170]
 gi|88709990|gb|EAR02222.1| Holliday junction DNA helicase motor protein [Maribacter sp.
           HTCC2170]
          Length = 193

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      +V+I+  GV Y +   + T S L  + +  +L+    +++D   L
Sbjct: 1   MITHLKGKLVEKNPTHVIIECAGVGYFVNISLHTFSNLKDVENI-SLYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+G+  A  +LS ++  ++ ++I   +   I  I GI  K 
Sbjct: 60  FGFAEKSEREIFRLLLSVSGIGSSTARTMLSSLSPAQIRDAIANGDVATIQGIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC--VNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ +L+ K + +  + +  +S    NKE+            A+SAL  LG+ + QA 
Sbjct: 120 AQRVILDLRDKILKVYDIDEVSLSSNNTNKEE------------ALSALEVLGFARRQAE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  VL ++ +++ ++ II+ AL+ +
Sbjct: 168 KVVDKVLSQDSSLSVEN-IIKHALKNL 193


>gi|299769122|ref|YP_003731148.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1]
 gi|298699210|gb|ADI89775.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1]
          Length = 199

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +     ++ Q   S     Q    +    A  A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDR---FKTLAQGTSSTTTLPQIQFAANSPVA-EAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|332982456|ref|YP_004463897.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1
           BON]
 gi|332700134|gb|AEE97075.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1
           BON]
          Length = 194

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G IE    +YV+IDV G+ + +Y   + L+ +  +     L+V  H+ +  + L
Sbjct: 1   MLAYLDGLIEHKSSNYVIIDVNGIGFKVYATTKILADMPDVKSRTRLYVHWHIGEGNMAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+     F  L SV GVG + A+ ++  ++  +++ +I+  + K +++  GI  K 
Sbjct: 61  FGFASEQQVDMFESLISVSGVGPKGALALMDALSYEQILLAIVQGDEKSLSRAKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      +   D+     E  +          A+ AL++LGY   +A   
Sbjct: 121 AQRIIMELKDKLHMPREIKSSDIGERIDESTY--------GQAVEALISLGYAPAEAARV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V    +++    ++I+ ALR
Sbjct: 173 LEGVTTDGRSL---EEVIKEALR 192


>gi|15835402|ref|NP_297161.1| Holliday junction DNA helicase motor protein [Chlamydia muridarum
           Nigg]
 gi|270285581|ref|ZP_06194975.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg]
 gi|270289591|ref|ZP_06195893.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Weiss]
 gi|301336977|ref|ZP_07225179.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum MopnTet14]
 gi|13431873|sp|Q9PJP0|RUVA_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7190816|gb|AAF39591.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg]
          Length = 200

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           M   IKG +    E YV+I+  G+ Y I    R L  L ++      ++V + +R+ +  
Sbjct: 1   MYEYIKGKLTHTDEAYVVIESFGIGYSIMLSERFLVDLRELMHQEVLIYVHSVIRETEHS 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLAILNMFPLQELCSVARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +  ++    +       +  SF    I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPALMPLYLEEPVVASS-----STTTSFK-EGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +   +K+    A  ++++ +ALR
Sbjct: 175 MMTEAVKELSEDASVAELLPVALR 198


>gi|188586412|ref|YP_001917957.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229560108|sp|B2A5L5|RUVA_NATTJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|179351099|gb|ACB85369.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 214

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +  +  DY ++   G+ Y IY P      +   G    L     +R+D + L
Sbjct: 1   MITRIRGEMLEITPDYCVVMAGGLGYKIYIPDNCQEEIPDPGQEIDLHTYLSVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S      F L+ +V G+G ++A+ ++  I  TE   S++      + ++PGI  K 
Sbjct: 61  YGFTSGEQLAVFELIMNVSGIGPKIALALVGTIPPTEFYLSVLNDQVNQLTKVPGIGKKS 120

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNK-----EQAHICSMPSFAINAISALVNLGYGQ 174
           A RI+ ELK K   ++S    QD+S   K     E+  I +         +AL +LGY  
Sbjct: 121 AQRIILELKEKVKDITSKDAYQDISASEKLDNTGEKLGISTRHKHLDELKAALSSLGYTN 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
            +    V ++  +     D  +++RLAL+ ++ 
Sbjct: 181 REIEKTVDAIQGQITEGQDMEELLRLALQKLNT 213


>gi|227496221|ref|ZP_03926520.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis
           DSM 15434]
 gi|226834252|gb|EEH66635.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis
           DSM 15434]
          Length = 209

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+V GV         TL+ L ++G+  T+  E  +R+D + L
Sbjct: 1   MIASLRGTVLDISLTGAVIEVGGVGMAFQATPTTLAGL-RVGEEGTVHTELVVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +RQ F +L   +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADADERQCFRVLLGAKGVGAKLALAILAVHTPDALRRAIASQDVAALKRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQA 177
           A R++ ++  K   L  +  QD++   + QA   +      + ++ALV LG+ +    QA
Sbjct: 120 AQRVIIDVGDK---LGPLTGQDLAA-ERPQAPAETGEEANPDVVAALVQLGWNEATARQA 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
             AV S  +++       +++R +LR
Sbjct: 176 VGAVESGAQEQGEALSVPELLRASLR 201


>gi|227894652|ref|ZP_04012457.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047]
 gi|227863547|gb|EEJ70968.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047]
          Length = 195

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YV++DV GV Y +Y P        K G    +++E  +R   I L+GF S  D+  F+ L
Sbjct: 16  YVVVDVNGVGYKVYSPT---PFAYKQGQKAKVYIEQVVRDTGITLYGFQSQDDKGLFLKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV G+G + AM +++   +  L E+I     K + + PG+  K AS+I+ +LKGK    
Sbjct: 73  LSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGKLGDY 132

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
             V + D +   +E +   +      +A+ AL+ LGY Q +       + K + + AD
Sbjct: 133 --VARLDRTDSGEEISPALN------DALLALIALGYTQKEVDRITPKLEKVDADTAD 182


>gi|262278158|ref|ZP_06055943.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258509|gb|EEY77242.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus
           RUH2202]
          Length = 199

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +     ++ Q   S     Q    +    A  A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDR---FKTLAQGTSSTTTLSQIQFAANSPVA-EAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|166363769|ref|YP_001656042.1| Holliday junction DNA helicase RuvA [Microcystis aeruginosa
           NIES-843]
 gi|189045757|sp|B0JRV0|RUVA_MICAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166086142|dbj|BAG00850.1| holliday junction DNA helicase [Microcystis aeruginosa NIES-843]
          Length = 209

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 97/183 (53%), Gaps = 11/183 (6%)

Query: 17  VLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +++DV  + Y I  P R  L       D C +F    +R++Q  L+GF +  +R+ F  L
Sbjct: 22  LILDVNQIGYEIQIPSRLALDIGNNNNDSCQIFTHLLLREEQPLLYGFGTAPERELFRQL 81

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV GVGA++A+ ++  +   ELV +I+  N+K++++ PG+ +K A RI  ELK K  + 
Sbjct: 82  LSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTPGVGLKTAERIALELKTKLAAW 141

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
             + +   +           +P+ AI  +    L+ LGY Q++   A ++VL ++   + 
Sbjct: 142 RQLREATTTIT-------AILPAAAILEDVQMTLLALGYSQEEIDRA-MAVLSQDALFSK 193

Query: 194 DSQ 196
           ++Q
Sbjct: 194 NTQ 196


>gi|163753887|ref|ZP_02161010.1| Holliday junction DNA helicase [Kordia algicida OT-1]
 gi|161326101|gb|EDP97427.1| Holliday junction DNA helicase [Kordia algicida OT-1]
          Length = 193

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +       V+I+  GV Y I   + T S +    +   LF   H+R+D   L
Sbjct: 1   MITHIQGKLVEKNPTDVVIECNGVGYFINISLTTYSQIPN-QENIKLFTHLHVREDAQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F LL SV G+G   A  +LS +T+ ++ E+I   +   I  + GI  K 
Sbjct: 60  YGFFQKAERAVFRLLISVSGIGTSTARTMLSSLTSEQICEAIGSGDVPTIQGVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK K + L  + +  MS    NKE+             +SAL  LGY + Q+ 
Sbjct: 120 AQRVIIELKDKVLKLYDLDEVSMSQNNTNKEE------------TLSALEVLGYTRKQSE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             +  ++ KE       Q+I++AL+ +
Sbjct: 168 RVLDKII-KEMPAGSVEQLIKMALKNL 193


>gi|154686915|ref|YP_001422076.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens
           FZB42]
 gi|308174476|ref|YP_003921181.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|166230516|sp|A7Z769|RUVA_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154352766|gb|ABS74845.1| RuvA [Bacillus amyloliquefaciens FZB42]
 gi|307607340|emb|CBI43711.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328554396|gb|AEB24888.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens
           TA208]
 gi|328912801|gb|AEB64397.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           amyloliquefaciens LL3]
          Length = 201

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 108/207 (52%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y ++ P      + K+ +  T+F   H+++D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPN---PFIYKVSNQETIFTYHHIKEDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L       ++E+I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A +I+ +LKGK   L+ VV + +  +   +A I    +      A+ AL  LGY + +  
Sbjct: 118 ARQIILDLKGK---LADVVPEMIDNLFNHEARIEKQEAETALDEALEALRVLGYAEKE-I 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V+  LK+E  ++ D Q ++ AL+ +
Sbjct: 174 KKVLPHLKEETALSTD-QYVKKALQKL 199


>gi|284051632|ref|ZP_06381842.1| Holliday junction DNA helicase RuvA [Arthrospira platensis str.
           Paraca]
 gi|291571635|dbj|BAI93907.1| Holliday junction DNA helicase RuvA [Arthrospira platensis NIES-39]
          Length = 206

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 27/209 (12%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG + G + G+Y+       + +DV GV Y +    R  +   K G+   +F    +R 
Sbjct: 1   MIGYLNGTVAGIYKKTGNRVILYLDVNGVGYELQILPRMQNLDAKTGENLQVFTHLQVRD 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D + L+GF S  +R  F  L SV G+G ++A+ +L  +   +LV++I+  N+ ++ + PG
Sbjct: 61  DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLELPDLVQAIVGGNTGILTKTPG 120

Query: 116 ISMKIASRIMTELKG------KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           +  K A RI  ELK       K   L +V   ++S   +E+  +            +L+ 
Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAEIQEEVEM------------SLLA 168

Query: 170 LGYGQD---QATTAVVSVLK-KEKNIADD 194
           LGY      QA TA+ S     E N A+D
Sbjct: 169 LGYTSSEVMQALTAITSHPNLAENNSAED 197


>gi|241766520|ref|ZP_04764384.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN]
 gi|241363253|gb|EER58812.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN]
          Length = 190

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSTFYNLPAVGERVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R A+ +LS +   +L ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGTATERQAFRELIKISGVGPRTALSILSGMGVGDLAQAITLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +      Q     +  QA I          + ALV LGY  D+   A
Sbjct: 121 AERLLLELKGKLGAEMGTHAQ---VTSDAQADI----------LQALVALGY-NDKEAAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +  L  +  ++D    I+LAL+A++
Sbjct: 167 ALKALPADVGVSDG---IKLALKALA 189


>gi|271967390|ref|YP_003341586.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium
           roseum DSM 43021]
 gi|270510565|gb|ACZ88843.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium
           roseum DSM 43021]
          Length = 206

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 24/217 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D  +++V GV  +++C   TL+ L ++G+   L     +R++ + L
Sbjct: 1   MIASVRGRVAAIAPDGAVVEVGGVGMLVHCTPGTLATL-RVGEEARLATSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R  F +LQ+  GVG +VA+ +L+  T   L  ++   + K + ++PG+  K 
Sbjct: 60  FGFGSDDERGVFEMLQTANGVGPKVALAMLAVHTPNALRMAVASADVKALTRVPGVGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-----KEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ +LK K  +    V   ++        ++Q H            S LV LGY   
Sbjct: 120 AQRIIVDLKDKLGTPDQAVNAALNGGAAAPAWRDQVH------------SGLVGLGYSAR 167

Query: 176 QATTAVVSVLKK------EKNIADDSQIIRLALRAIS 206
            A  AV +V  +      E      + +++ ALRA+S
Sbjct: 168 DADEAVAAVTPQADIEVAEGRSPQVATLLKAALRALS 204


>gi|289425381|ref|ZP_06427158.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187]
 gi|289428316|ref|ZP_06430003.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165]
 gi|295130717|ref|YP_003581380.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137]
 gi|289154359|gb|EFD03047.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187]
 gi|289158465|gb|EFD06681.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165]
 gi|291375923|gb|ADD99777.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137]
 gi|332675562|gb|AEE72378.1| holliday junction ATP-dependent DNA helicase RuvA
           [Propionibacterium acnes 266]
          Length = 201

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G +      +V++D  GV   + CP  T +   +I    +L     +R++ + L
Sbjct: 1   MISHFSGMVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K 
Sbjct: 60  YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ ELK K  +L+               H+ +   +       LV LG+    A  A
Sbjct: 120 AAKMILELKDKVAALTP-----RGASVSGATHVVA--PWREQVAEGLVGLGWSAKDAEKA 172

Query: 181 V--VSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+ LK+         ++R ALR+++
Sbjct: 173 VDKVAALKEADPAMTIGNLMRAALRSLA 200


>gi|163840742|ref|YP_001625147.1| Holliday junction DNA helicase RuvA [Renibacterium salmoninarum
           ATCC 33209]
 gi|189045763|sp|A9WSE5|RUVA_RENSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|162954218|gb|ABY23733.1| holliday junction DNA helicase [Renibacterium salmoninarum ATCC
           33209]
          Length = 214

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 17/198 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +IDV GV  ++    +TL  L ++G   TL     +R+D + L
Sbjct: 1   MISFLRGPVAHIGLSAAVIDVGGVGMLVQATPKTLGTL-RLGQESTLTTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F +L +V G+G R+ + VL+ +    +  +    + K   ++PGI  K+
Sbjct: 60  YGFADPDEREVFEILLTVSGIGPRLGLAVLAVLEPETIRVATSTGDGKTFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +   +V     S   + +  +          ++A+ +LG+ +  A  +
Sbjct: 120 AGRIVLELAGKLVPHGTVNGAPASPSAQWKPQV----------VAAMTSLGWSEKDALAS 169

Query: 181 VVSVLKKEKNIADDSQII 198
           V      EK  AD  ++I
Sbjct: 170 V------EKATADSPELI 181


>gi|73667297|ref|YP_303313.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str.
           Jake]
 gi|90134943|sp|Q3YRE0|RUVA_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72394438|gb|AAZ68715.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str.
           Jake]
          Length = 190

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 119/212 (56%), Gaps = 29/212 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58
           MIG + G IE +Y  Y++++V  V YI++   R L +C  KIG+   L++ETH+ +D + 
Sbjct: 1   MIGSLTGIIEEIYITYIILNVGNVGYIVHVSQRVLQTC--KIGNNIKLYIETHVNRDNLT 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GFL   ++ +  +L ++ G+  + AM +LS+++  E + S ++ N+K   +  GI  
Sbjct: 59  QLYGFLDKQEQDYMRMLITINGINYKTAMSILSKLSP-EQIFSAVVSNNKNAFRGNGIGE 117

Query: 119 KIASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           K+A RI TEL+ K     I  + ++++D                   ++++AL++LGY +
Sbjct: 118 KLAGRITTELQYKISKMPIEETLIIKED-------------------DSLAALISLGYDK 158

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +A  A+  +     N A+  +IIR AL+ +S
Sbjct: 159 LKAFNAIQEIKSDFPN-ANIQEIIRKALQKLS 189


>gi|313159381|gb|EFR58745.1| Holliday junction DNA helicase RuvA [Alistipes sp. HGB5]
          Length = 194

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 11/201 (5%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           I G +  +   Y +ID  GV Y ++  + T S +    +   L+V   +R+D   L+GF 
Sbjct: 5   ISGPVAEVAPAYAVIDAGGVGYYLHISLETFSAIEHT-ETARLYVHYVVREDAQLLYGFA 63

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +R+ F  L SV GVG   A  +LS  +  EL   I   N+ ++  + G+ +K A +I
Sbjct: 64  TKTERELFRHLISVSGVGGNTARMILSTYSPRELQGIITSGNAVLLKNVKGLGLKTAQKI 123

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + EL GK   L        +  N E+            A++ALV LG+ +  A  A+  +
Sbjct: 124 IVELSGKLTGLGDADAALPAAGNGEKLE---------EALAALVMLGFAKTAAEKALRGI 174

Query: 185 LKKEKNIADDSQIIRLALRAI 205
           L +E   A    ++R+ L+++
Sbjct: 175 L-RENPGASVEDLVRMGLKSL 194


>gi|327475178|gb|AEA77184.1| holliday junction DNA helicase [Bacillus aquimaris]
          Length = 203

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +YV+++  G+ Y +Y                 +F   H+R+D I L
Sbjct: 1   MYEYIKGTISQVSPEYVVVENNGIGYQLYT-ANPFVYSKYHNQEIQIFTYQHVREDIIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++  FM L +V G+G + A+ +L+     +++ +I  +N   + + PG+  K 
Sbjct: 60  YGFLSLEEKLLFMKLLNVSGIGPKGALAILASGAPQQVITAIEEENESFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ +LKGK   L  VV      +   N E   +         AI AL  LGY  D+ 
Sbjct: 120 ARQMILDLKGK---LQDVVPDYFPSLFNHNDETEALSDKDEAFDEAILALKALGYS-DRE 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              +   LK E + AD  +IIR AL+
Sbjct: 176 IKKITPKLKGEGHSAD--EIIRKALQ 199


>gi|325286780|ref|YP_004262570.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga
           lytica DSM 7489]
 gi|324322234|gb|ADY29699.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga
           lytica DSM 7489]
          Length = 193

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 20/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G +      +++I+  GV Y +   + TLS   K+ D   + + TH+  ++D  
Sbjct: 1   MITHLRGKLVEKNPTFLVIECNGVGYFVNISLHTLS---KVSDAENIQLYTHLQVKEDSH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF    +R+ F LL SV G+G  +A  +LS ++  ++ ++I   +   I  + GI  
Sbjct: 58  TLFGFAEKSEREIFRLLISVSGIGPSIARTMLSSLSPAQVRDAIAGGDVATIQSVKGIGA 117

Query: 119 KIASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           K A R++ +LK K + +  +  V    +  NKE+            A+SAL  LG+ + Q
Sbjct: 118 KTAQRVILDLKDKVLKIYDIDEVSTSSNNTNKEE------------ALSALEVLGFARKQ 165

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           A   V  V+ ++  ++ ++ II+LAL+
Sbjct: 166 AEKTVDVVVSQDPTLSVEN-IIKLALK 191


>gi|325068881|ref|ZP_08127554.1| Holliday junction DNA helicase subunit RuvA [Actinomyces oris K20]
          Length = 217

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L ++G+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEEALVHTEMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-------PSFAINAISALVNLGYG 173
           A R++ ++  K   L  V   D+            M       P    + ++ALV LG+ 
Sbjct: 120 AQRVILDVADK---LGPVTGDDLGAAGTTAQTAPGMEVVAAGGPEPHADVVAALVQLGWN 176

Query: 174 QDQATTAVVSVLKKEKNIA---DDSQIIRLALR 203
           +  A  AV SV     +     D + ++R +LR
Sbjct: 177 EASARQAVASVTADAADGGQEPDMAAVLRASLR 209


>gi|116670849|ref|YP_831782.1| Holliday junction DNA helicase RuvA [Arthrobacter sp. FB24]
 gi|166230514|sp|A0JXB2|RUVA_ARTS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116610958|gb|ABK03682.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter sp. FB24]
          Length = 214

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +ID+ G    +    +TLS L + G+   LF    +R+D + L
Sbjct: 1   MISFLRGTVAHVGLSSAVIDLNGAGMSVNATPQTLSGL-RTGEEGKLFTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R+ F +L SV GVG R+A+ VL+      +  +    + K   ++PGI  K+
Sbjct: 60  FGFSSDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDGKAFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +   +      +              +    ++A+ +LG+ +  AT++
Sbjct: 120 AGRIVLELAGKLVPHGTGAAAAPAAAASAP--------WKPQVVAAMTSLGWSEKDATSS 171

Query: 181 VVSVLKKEKNIADDSQ---IIRLALR 203
           +   L     +    Q   I+R  LR
Sbjct: 172 IDKALSDSPELEAGGQVAEILRATLR 197


>gi|304440231|ref|ZP_07400121.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371280|gb|EFM24896.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 193

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 14/192 (7%)

Query: 14  EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           E+ V I V G+  +I    R    + ++ +  TLF +  +R+D I ++GF+S  +R  F 
Sbjct: 14  ENSVTIMVGGIGLLINVSSRENKEI-RLNEEITLFTKMVVREDDISIYGFISKRERSIFS 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
           LL  V G+G +VAMG++      EL + I+  + K + + PG+  K A RI+ ELK + +
Sbjct: 73  LLTMVSGIGPKVAMGIMGMYGEEELRKYILSSDVKSLTKAPGVGKKTAERIILELKDRIV 132

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
            +      D+    KE     S+P    +AI ALV LG+   +   A+++V   + +++ 
Sbjct: 133 KIFGDFIPDV----KE-----SVPLENDDAIEALVGLGFSAIEVKNALMNV---DPSLSV 180

Query: 194 DSQIIRLALRAI 205
           D + I++AL+ I
Sbjct: 181 DDK-IKIALKNI 191


>gi|242239574|ref|YP_002987755.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703]
 gi|242131631|gb|ACS85933.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703]
          Length = 204

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y ++ P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLIEAAGVGYEVHMPMTCFYELPELGQESVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVFAVEREEIGALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +    S ++    A     P     A +ALV LGY   +A  
Sbjct: 121 AERLVVEMKDRFKGLNGDLFTAASDISLPATAGKADEPDPQAEAEAALVALGYKPQEAAR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V + +   AD   +IR ALRA
Sbjct: 181 MVSKVARPD---ADCETLIREALRA 202


>gi|313837773|gb|EFS75487.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL037PA2]
 gi|314927345|gb|EFS91176.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL044PA1]
 gi|314972425|gb|EFT16522.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL037PA3]
 gi|328907430|gb|EGG27196.1| holliday junction DNA helicase RuvA [Propionibacterium sp. P08]
          Length = 201

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V++D  GV   + CP  T +   +I    +L     +R+D + L
Sbjct: 1   MISHLSGKVNAAGLTWVVLDNCGVGIKVLCPPATAAS-ARIDQDMSLQTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K 
Sbjct: 60  YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAIANEDDATLCRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ ELK K  + +          +   AH+ +  S+       LV LG+    A  A
Sbjct: 120 AAKMILELKDKMAAFAP-----RGSSSSGAAHVAA--SWREQVAEGLVGLGWPTKDAEKA 172

Query: 181 V--VSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+ L++         ++R ALR+++
Sbjct: 173 VDEVAALREADPTMTIGSLMRAALRSLA 200


>gi|225011142|ref|ZP_03701604.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-3C]
 gi|225004704|gb|EEG42664.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-3C]
          Length = 193

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       ++++  GV Y+++  + T S L    +  +++    +++D   L
Sbjct: 1   MITHLRGKLVEKNPTEIVVECGGVGYLVHISLHTYSLLPS-EEAVSIYTHLQVKEDSHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F LL SV G+GA  A  +LS ++  EL ++I   N   I  + GI +K 
Sbjct: 60  YGFMEVSERAIFRLLISVSGIGANTARTMLSSLSPEELRDAIAASNVGTIQSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK K + +  +  +   +   NKE+            A+SAL  LG+ + Q+ 
Sbjct: 120 AQRVIIELKDKILKIYDLEELSTPLDNTNKEE------------ALSALEVLGFARKQSE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  +LK   +++ +  II+  L+ +
Sbjct: 168 KMVEKILKASPSLSVE-DIIKQTLKGL 193


>gi|294501382|ref|YP_003565082.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551]
 gi|295706729|ref|YP_003599804.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319]
 gi|294351319|gb|ADE71648.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551]
 gi|294804388|gb|ADF41454.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319]
          Length = 203

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +YV+I+  G+ Y ++ P   +  + +     T++   ++R+D I L
Sbjct: 1   MFDYIKGTVTYINPEYVVIENNGIGYQVFTPNPYVFSIDE--QPKTVYTYQYVREDVIAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   +  FM L SV G+G +  + +L+     ++V+++  ++ K + + PG+  K 
Sbjct: 59  YGFASREQKDLFMKLISVSGIGPKGGLAILASGNPAQVVQAVEEEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAIN-AISALVNLGYGQDQA 177
           A +++ +LKGK   L  +V   +  +  + +   + S  S A++ AI AL  LGY + + 
Sbjct: 119 ARQMILDLKGK---LHDIVPDAVPSLFADLDAQEVKSQSSEALDEAIEALKVLGYAE-RE 174

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
              +V  L KE    D  Q I+ AL+
Sbjct: 175 IKKIVPALMKETMTTD--QYIKEALK 198


>gi|261749358|ref|YP_003257043.1| Holliday junction DNA helicase motor protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497450|gb|ACX83900.1| Holliday junction DNA helicase motor protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 202

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 10/191 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +    +  ++ID  GV Y ++    T S L  + G   +++    ++++Q  
Sbjct: 1   MITHLRGKLIEKNQSSLIIDCNGVGYYLHISSYTYSSLLEEEGKEISIYTYLFIKENQHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF   ++R+ F  L SV G+G   A+ +LS +T  E+ ESI  ++ +V  Q+ GI  K
Sbjct: 61  LYGFFERIERKIFSHLISVNGIGPSSAITILSSLTPHEIKESISREDIEVFNQVKGIGKK 120

Query: 120 IASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQ 176
            A RI+ ELK K +IS S++ ++       +  +    P   I   A+SAL+ LG+   +
Sbjct: 121 TAQRIIIELKDKISISPSTIPKKG------KNVNFFDKPPIFIKKEALSALIVLGFSPKE 174

Query: 177 ATTAVVSVLKK 187
           +   +  +L K
Sbjct: 175 SKKVLEEILDK 185


>gi|189345865|ref|YP_001942394.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245]
 gi|229560015|sp|B3EFD2|RUVA_CHLL2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189340012|gb|ACD89415.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245]
          Length = 203

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  ++DV G+ Y       T   L   G+   L+    +++D   L
Sbjct: 1   MFAYFRGRLTSAMPDEAVVDVSGIGYRFLVSAFTYRQLPPPGEDVLLYAHLSVKEDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +RQ F LL    GVG ++A+ VLS +   E+ E+I+    + +  I G+  K 
Sbjct: 61  YGFSSESERQLFRLLLLTTGVGPKLALAVLSGLQVHEVHEAIMANAPERLYGISGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + +S    + ++  +     +        +A++AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDRILKMSPDGGKTIASGSGGNLAL----QIKDDALNALITLGFSKPAAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L+   +++ + ++++ AL +I
Sbjct: 177 VTGILEGNPSLSVE-EVVKSALVSI 200


>gi|154498068|ref|ZP_02036446.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC
           29799]
 gi|150273058|gb|EDN00215.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC
           29799]
          Length = 201

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 1/127 (0%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           +KG +  +     ++D  GV Y       TL+ L K G+  TL+   ++R+D + L+GF 
Sbjct: 5   VKGPVVHMAPYLAVVDCGGVGYACRTTNNTLARLRK-GETATLYTHLNVREDAMELYGFA 63

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S+ +   F LL SV GVG + A+ +LS  +   L  SII  + K +   PGI  KIA RI
Sbjct: 64  SENELSCFQLLISVSGVGPKAALSILSSTSPEGLATSIITGDEKALTVAPGIGKKIAQRI 123

Query: 125 MTELKGK 131
           + ELK K
Sbjct: 124 ILELKDK 130


>gi|297243469|ref|ZP_06927401.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis AMD]
 gi|296888514|gb|EFH27254.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis AMD]
          Length = 209

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 12/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LI V GV Y  Y P + LS L + G    ++    + QD + L
Sbjct: 1   MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+ +Q V G+G +VA+ +LS +    L+++I   +   ++  PG+  K 
Sbjct: 60  YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG   SL   +  D S  +  Q++   + S     I  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG---SLDPSILAD-SSNDSTQSNKQIVDSSVQCVIEGLISLGWRQVDAQRA 175

Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAI 205
           V  V   E NI      AD   ++R+AL ++
Sbjct: 176 VEQVC-AENNISTPISDADLPNVLRMALASL 205


>gi|76789238|ref|YP_328324.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           A/HAR-13]
 gi|90134759|sp|Q3KLJ6|RUVA_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76167768|gb|AAX50776.1| RuvA [Chlamydia trachomatis A/HAR-13]
          Length = 200

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R ++     +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +++ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAEKECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176
            A ++M +LK K  +L  +  ++   V    A+     SF    I AL+NLG+ +   D+
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
             T  V  L +E ++A+   ++ +ALR
Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198


>gi|307130888|ref|YP_003882904.1| component of RuvABC resolvasome, regulatory subunit [Dickeya
           dadantii 3937]
 gi|306528417|gb|ADM98347.1| component of RuvABC resolvasome, regulatory subunit [Dickeya
           dadantii 3937]
          Length = 205

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y ++ P+     L  +G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLIEASGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  Q    + ++PG+  K 
Sbjct: 61  FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +   +A   + P       A +ALV LGY   +A 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPEAAGKAEPEADPQAEAEAALVALGYKPQEAG 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V +     AD   +IR ALRA
Sbjct: 181 RMVSKVARPG---ADCETLIREALRA 203


>gi|292490335|ref|YP_003525774.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4]
 gi|291578930|gb|ADE13387.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4]
          Length = 199

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 9/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L++VQGV Y +  P+ T   L   G    L+    +R D   L
Sbjct: 1   MIGRLRGVLLEKRAPFLLLEVQGVGYELEAPMSTFYVLPDRGAEVILYTHLVVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F S+ +R+ F  L  V GVGA++ + +LS I        +   ++  + ++PG+  K 
Sbjct: 61  YAFASEKERELFRNLIRVNGVGAKLGLAILSGIEVESFTRCVQEGDTASLTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   L    +++M+ V      + S      +A+SALV LGY + Q  + 
Sbjct: 121 AERLIVEMRDR---LFDGPREEMAGV---LPRVGSGQVPTSDAVSALVALGY-KSQDASR 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +V  L  E  +A + +IIR AL
Sbjct: 174 MVRQLNTE-GLATE-EIIRQAL 193


>gi|328955749|ref|YP_004373082.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium
           glomerans PW2]
 gi|328456073|gb|AEB07267.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium
           glomerans PW2]
          Length = 206

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        LIDV GV Y +     T   L + G    LF    +RQD + L
Sbjct: 1   MISQLHGTLVDSSPTSALIDVAGVGYELGISGVTAQALPQPGSDVMLFTRLQVRQDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L +V  +GAR+A+  LS  T +++   +  +++  +A++PG+  K 
Sbjct: 61  FGFATREERAMFDRLIAVSSIGARLALATLSTFTVSQIRVIVAQEDAARMAEVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS-CVNKEQAHICSMPSFAI---NAISALVNLGYGQDQ 176
           A R++ ELK      S++ + D+  C +  +      PS      +A +AL+++G+   +
Sbjct: 121 AQRLILELK------STLEKGDLPGCADASRESGAMSPSAGSAVDDARAALLSMGFSPQE 174

Query: 177 ATTAVVSVLKKEKNI 191
              A+ ++  +E+ +
Sbjct: 175 VAVALETLGDEEREM 189


>gi|227484942|ref|ZP_03915258.1| possible crossover junction endoribonuclease subunit A
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227237097|gb|EEI87112.1| possible crossover junction endoribonuclease subunit A
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 196

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 7/176 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+++ + E+  +I+   + Y I   + +LS + +I +   ++    +R+D I L
Sbjct: 1   MISYIKGDVKAINEEGFIIETNNIGYYINSTLTSLSNI-QINNEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  + + F+LL SV  +G ++A+G+LS I+A E+  +I+  +   +    GI  K 
Sbjct: 60  YGFYSKDELEMFLLLISVSSIGPKIAIGMLSSISADEIKLAIVNNDIDKLTDAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           ASRI+ EL  K   ++      +  VN  + +   +      A  AL NLGY ++ 
Sbjct: 120 ASRIILELVDKVKKMAIPDLDKVEKVNPVKNNDIEV------AREALKNLGYMEND 169


>gi|332670539|ref|YP_004453547.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484]
 gi|332339577|gb|AEE46160.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484]
          Length = 204

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D  +++V GV  ++     TL+ L ++G   TL     +R+D + L
Sbjct: 1   MIASVRGTVLAVRLDSAVVEVGGVGMLVQATPATLAGL-RVGAQATLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F ++Q+V GVG R+A+ +L+  T   L  ++  ++   + ++PGI  K 
Sbjct: 60  FGFADADEREVFEVVQTVSGVGPRLALAMLAVHTPDGLRRAVAGEDLAALMRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  +  + S       S    +              + ALV LG+    A  A
Sbjct: 120 AQRIVLELGDRLGAPSGAGAPATSSAASDDRR--------DQVVEALVGLGWNAKAAGDA 171

Query: 181 VVSVLKKEKN--IADD-SQIIRLALRAIS 206
           V +VL+       AD+ + ++R ALR + 
Sbjct: 172 VSAVLQDAPGPVAADEVAGVLRAALRTLG 200


>gi|295107077|emb|CBL04620.1| Holliday junction DNA helicase subunit RuvA [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 199

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G       IDV GV Y +     +LS L + G    +     +R D I L
Sbjct: 1   MIAFLKGRLAGKTAAAAFIDVNGVGYAVGMSQASLSKLPEAGASVEVHTYLQVRDDAIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  ++  F  L  V GVG +VA+  LS  T   LV +I  Q+   +++IPG+  K 
Sbjct: 61  YGFMTVEEKALFERLIGVGGVGPKVALAALSVFTPQALVAAIAAQDVAAVSKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG      S+ Q   S  ++ +A           A  AL+++G+   +A  A
Sbjct: 121 ASRIILELKG------SLDQGLASLFDEGEAPAARAAEQLRGAHEALLSMGFTAAEADLA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
               LK       DS +++ AL+
Sbjct: 175 ----LKGAPEGVSDSAVLQYALK 193


>gi|304312895|ref|YP_003812493.1| Holliday junction resolvasome DNA-binding subunit [gamma
           proteobacterium HdN1]
 gi|301798628|emb|CBL46860.1| Holliday junction resolvasome DNA-binding subunit [gamma
           proteobacterium HdN1]
          Length = 208

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 15/210 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       ++IDV GV Y +  P+ T   L  +G+   L     +R+D   L
Sbjct: 1   MITHLSGTLRHKQAPQLVIDVSGVGYELDAPMTTFYRLPSLGERVELLTHLVVREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+G +VA+ +LS I   + V  I   +   + +IPG+  K 
Sbjct: 61  FGFATQEERSLFRALIKVTGIGPKVALAILSGIEVPQFVRCINCHDVSALIRIPGVGKKT 120

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYG 173
           A R++ E++ +       SL+++ ++ +   N   +QAH          A +AL+ LGY 
Sbjct: 121 AERLIVEMQDRLPRTLETSLTALQEESLLGENTRPQQAH-----RPLDEAEAALIALGY- 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           + Q     ++ L  E       Q+IR AL+
Sbjct: 175 KPQEAARCLNALNTEG--LSSEQLIRQALK 202


>gi|258645438|ref|ZP_05732907.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470]
 gi|260402789|gb|EEW96336.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470]
          Length = 201

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 9/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG    + +++  I+  G+ Y ++    +   +  +G    L     +R+D I L
Sbjct: 1   MIGYIKGKATVVSKEFCFIEAGGIGYRVFISEMSRQKI-HLGAPVRLLTYMAVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F++L SV  +G +VAMG+LS +   + V SI  +N  V+ ++PG+  K 
Sbjct: 60  YGFLTQEEYDLFLILISVSKIGPKVAMGILSVMEPADFVLSIRNRNLSVLTKLPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +    + D+       A        A +A   L  LGY      T 
Sbjct: 120 AERLLVELKDK---VGDFAEGDIDEPESLAAGKPDESGIAADAAKYLRALGY----EDTE 172

Query: 181 VVSVLKKEK-NIADDSQIIRLALR 203
           +  VLKK      D S ++  ALR
Sbjct: 173 IQPVLKKLSIEYKDVSPLVSAALR 196


>gi|256371996|ref|YP_003109820.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008580|gb|ACU54147.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 189

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIY--CPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           MIG + G +       V+IDV GV Y ++   P  TL    +  D C L++ T +R D I
Sbjct: 1   MIGWLHGRVASAGRSPVVIDVAGVGYEVHVTAPWATLL---RRDDECELWIRTIVRADAI 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S  +R+ F  L  V GVG ++A+G+L  I   EL  +I  ++   +  I G+  
Sbjct: 58  ALYGFASQAEREAFDALIGVSGVGPQLALGILGGIEGDELWTAIATEDLGRLTAIAGVGP 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMS 144
           K A R++ EL   A  L+ V    MS
Sbjct: 118 KTAKRVVLELAPTAKRLAPVTGVPMS 143


>gi|163790795|ref|ZP_02185221.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7]
 gi|159873975|gb|EDP68053.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7]
          Length = 204

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG +  +   Y++++  G+ Y ++   P R  S   K+    T++V   +R+D I
Sbjct: 1   MFEYIKGIVTFVSPAYIVLENSGIGYQLFIANPFRFSS---KLNAEATIYVHQAVREDAI 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF    ++Q ++ L SV G+G +  + +L+      LV++I  +++  + + PG+  
Sbjct: 58  TLYGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDDHQGLVQAIENEDAAYLTKFPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQA 177
           K AS+I+ +LKGK   LS  + Q  S  + +Q  + S   S    A+ AL  LGY   + 
Sbjct: 118 KTASQIVLDLKGKLADLS--LTQAESTTDYQQELVLSTNYSHVTEAVEALEALGYSAKEI 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
                 + K  K   D    +R ALR
Sbjct: 176 KKIEPQIRKLNKESTD--AYLREALR 199


>gi|238786430|ref|ZP_04630350.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           bercovieri ATCC 43970]
 gi|238712664|gb|EEQ04756.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           bercovieri ATCC 43970]
          Length = 196

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 5/190 (2%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           VL++  GV Y +  P+     L ++G    +F +  +R+D   L+GF    +R  F  L 
Sbjct: 8   VLLEANGVGYEVQLPMTCFYELPELGQEAIIFTQFIVREDAQLLYGFNDKQERALFRELI 67

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K +   L+
Sbjct: 68  KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 127

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
             +  +   +    +    +    I   A SALV LGY   +A+  V  + K     AD 
Sbjct: 128 GDLFNNTGDITLPASSSSQLSDADIEAEAASALVALGYKPQEASRLVSKIAKPG---ADC 184

Query: 195 SQIIRLALRA 204
             +IR ALRA
Sbjct: 185 ETLIRDALRA 194


>gi|330683931|gb|EGG95698.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU121]
          Length = 200

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57
           M   IKG +  L+  +V++DV GV Y I  P   R    L K +  F +L V    R+D 
Sbjct: 1   MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTPNSYRFQKYLDKEVQIFTSLIV----REDA 56

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF+++ ++  F+ L  V G+G + A+ +L+  T  E+ ++I  +N   + + PGI 
Sbjct: 57  QLLYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDAYLTKFPGIG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +I+ +LKGK           ++ +N+  A+     S    A+ AL  LGY + + 
Sbjct: 117 KKTARQIVLDLKGKVQITEENTDTLLNVMNESNAN----ESMIKEAMLALEALGYSK-RE 171

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
            + V  VL K+ N+    + +++ L+ +
Sbjct: 172 LSKVEKVL-KQSNMESVDEAVKIGLQTL 198


>gi|328473203|gb|EGF44051.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 10329]
          Length = 204

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A       S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPTDSASASSNSAEEEAVSALLALGYKPTQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K + +     Q+IR AL+++
Sbjct: 178 ASKVVSQIAKPDMS---SEQLIREALKSM 203


>gi|28897825|ref|NP_797430.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876984|ref|ZP_05889339.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AN-5034]
 gi|260901352|ref|ZP_05909747.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ4037]
 gi|31076902|sp|Q87QU8|RUVA_VIBPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28806038|dbj|BAC59314.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308093747|gb|EFO43442.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AN-5034]
 gi|308109588|gb|EFO47128.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ4037]
          Length = 204

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A       S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K + +     Q+IR AL+++
Sbjct: 178 ASKVVSQIAKPDMS---SEQLIREALKSM 203


>gi|298206830|ref|YP_003715009.1| Holliday junction DNA helicase motor protein [Croceibacter
           atlanticus HTCC2559]
 gi|83849464|gb|EAP87332.1| Holliday junction DNA helicase motor protein [Croceibacter
           atlanticus HTCC2559]
          Length = 193

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       +++D  GV Y +   + T   + K  +   +F    +R+D   L
Sbjct: 1   MITQLAGQLIEKNPTNIIVDCGGVGYFVNISLHTFGLI-KNEECVKIFTHLQVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL  V G+GA  A  +LS +T  ++ E+I   +   I  + GI +K 
Sbjct: 60  FGFAEKAEREVFRLLIGVSGIGASTARTMLSSLTPQQVTEAISQGDVATIQSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +++  + +   S  N ++            A+SAL  LGY + Q+   
Sbjct: 120 AQRVIIDLKDKILNVVGLDEVLPSQGNTQKEE----------ALSALETLGYTRKQSDKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK +   + ++ II+LAL+ +
Sbjct: 170 VAGILKTDPEASVET-IIKLALKKL 193


>gi|251798377|ref|YP_003013108.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2]
 gi|247546003|gb|ACT03022.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2]
          Length = 212

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 76/131 (58%), Gaps = 2/131 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  +  +YV++DV+ V Y ++ P    +  GK G   T+++  H+R+D I L
Sbjct: 1   MIDFLRGLISHVESEYVVLDVRDVGYQVFTP-NPYAFAGKEGT-VTIYIHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++  F  L  V G+G RVA+G+L+      ++ +I  +N   + ++PGI  K 
Sbjct: 59  YGFESREEQTLFRKLLEVSGIGPRVALGILAGGRPDAVIGAIQQENIAFLTRLPGIGKKT 118

Query: 121 ASRIMTELKGK 131
           A R++ +LK K
Sbjct: 119 AQRMILDLKDK 129


>gi|58336747|ref|YP_193332.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus
           NCFM]
 gi|227903308|ref|ZP_04021113.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796]
 gi|75358012|sp|Q5FLX3|RUVA_LACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58254064|gb|AAV42301.1| helicase Holliday junction [Lactobacillus acidophilus NCFM]
 gi|227868937|gb|EEJ76358.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796]
          Length = 195

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YV++DV G+ Y ++ P        K G    +++E  +R   I L+GF    D+  F+ L
Sbjct: 16  YVVVDVNGIGYKVFSPT---PFAYKQGQKAKVYIEQIVRDTGITLYGFQDQDDKGLFLKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV G+G + AM +++   +  L E+I     K + + PG+  K AS+I+ +LKGK   L
Sbjct: 73  LSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---L 129

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
              V +     N E+       S A+N A+ AL+ LGY Q +       +++ E + AD
Sbjct: 130 GDYVARLDKPENGEEI------SPALNDALLALIALGYTQKEVDRITPKLVEIEADTAD 182


>gi|300088237|ref|YP_003758759.1| Holliday junction DNA helicase RuvA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527970|gb|ADJ26438.1| Holliday junction DNA helicase RuvA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 195

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 17/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG    L  D+V+++V GV Y ++    TLS +   G+   L+    +R+D + L
Sbjct: 1   MISTLKGKAALLGADWVIVEVGGVGYKVFVSTATLSQIQNAGEI-RLYTHLQVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +   F  +  V G+GAR+A+ +LS     +L   I   N+ ++  +PG+  K 
Sbjct: 60  FGFLTFEELGIFETMLEVSGIGARLALALLSAFKPEDLANIIATGNADMLCTVPGVGKKT 119

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           ASRI+ ELK K A + S+    +   V+              + ++AL  LGY   +A  
Sbjct: 120 ASRIVLELKDKVARNWSAAPAGEGGAVDN-------------DVMAALTALGYSGAEAAR 166

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AVV++ +  K   ++   IRLAL  +S
Sbjct: 167 AVVALPRDGKLTLEEK--IRLALAGLS 191


>gi|271500732|ref|YP_003333757.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586]
 gi|270344287|gb|ACZ77052.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586]
          Length = 205

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L  +G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIVEKQPPQVLLEVGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  Q    + ++PG+  K 
Sbjct: 61  FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +    A   + P       A +ALV LGY   +A 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPAATGNTTPETDPLAEAEAALVALGYKPQEAG 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V    +  AD   +IR ALRA
Sbjct: 181 RMVSKV---SRPGADCETLIRDALRA 203


>gi|269795058|ref|YP_003314513.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii
           DSM 10542]
 gi|269097243|gb|ACZ21679.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii
           DSM 10542]
          Length = 206

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  D  +++V G+ Y++Y    TL+ L ++G   ++     +R+D + L
Sbjct: 1   MIASLSGTVQTVRLDSAVLNVAGIGYLVYATPATLATL-RVGAEASVATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F   Q+V GVG R+A+ +L+  T   L  ++   + K + ++PGI  K 
Sbjct: 60  YGFSDDDERSVFEASQTVSGVGPRLALAMLAVHTPDGLRRALAGGDVKALTRVPGIGAKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  K       + Q         A    +       + ALV+LG+    A  A
Sbjct: 120 AQRLILELGDK-------LGQPTGLDGGSVAPTAGLGDQRDQVVEALVSLGWSAKVAEDA 172

Query: 181 VVSVLKKEK----NIADDSQIIRLALRAI 205
           + +VL +        +D   ++R AL+ +
Sbjct: 173 IGTVLAESGATSVTTSDVPVVLRSALKVL 201


>gi|210635285|ref|ZP_03298481.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279]
 gi|210158446|gb|EEA89417.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279]
          Length = 208

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 16/181 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        +IDV GV + +     T + L ++G    L+    +R+D   L
Sbjct: 1   MISQLHGTVAEATPSMAVIDVNGVGFELGISGTTAAGLPQVGGKVLLYTRMVVREDSCTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L +V GVGA++A+ +L+  +  +L   ++ ++ K +A +PG+  K 
Sbjct: 61  FGFASKDERTMFDKLVAVSGVGAKLALAILTTFSVPQLYAVVMAEDDKGMATVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAI----SALVNLG 171
           A R++ ELKG          +D S      A    +P       A NA+    +AL+++G
Sbjct: 121 AQRLILELKG-------AFSKDRSLAGSAVAASIPLPLDVARPVAPNAMDDASAALLSMG 173

Query: 172 Y 172
           +
Sbjct: 174 F 174


>gi|315187235|gb|EFU20992.1| Holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM
           6578]
          Length = 197

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G   G+  + VLI+  G+ + I  P   LS L + GD   L+V  + R+D + L
Sbjct: 1   MLYSVRGVYRGVDGEKVLIETGGLTWEIDVPSSILSQLPEPGDSLLLYVYLYHREDVLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISM 118
            GF S  +R+ F+ L  VQGVG R A+ ++S +      E  I+QN  +  +A+ PGI  
Sbjct: 61  IGFASREERRLFLDLLKVQGVGPRQALRIISSVPVPIFRE--IIQNEDLARLAKTPGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A +++  LKG      S V+Q      K   H           + AL  +G+ + +A 
Sbjct: 119 KTAQKLLLTLKG------SYVKQGPGGTEKAGPH--------RELVEALAEMGFDRSRAE 164

Query: 179 TAVVSVLKK----EKNIADDSQIIRLAL 202
           + +  ++++    E     + +I+R A+
Sbjct: 165 SVLPDIIQEVSGGESVEGKEQEILRRAI 192


>gi|303249145|ref|ZP_07335385.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans
           JJ]
 gi|302489470|gb|EFL49417.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans
           JJ]
          Length = 202

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +    + Y +++   GV Y +  P    + L   G   +LFV T +R+D   
Sbjct: 1   MIGYIEGRVVVRRDRYAIVLTPGGVGYELELPGPVAASLPAPGGQASLFVHTVVREDAFE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  DR+ F +L  +  +G + A+ +LSR TA +L   +   +   + Q+ GI  K
Sbjct: 61  LFGFATIEDRETFRILIGITKLGPKTALAILSRYTADDLARIVATADLDALTQVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL  K       ++   +      A I      A + ++ L NLGY +  A  
Sbjct: 121 SAQRILIELTYK-------LEGQAATAAAVTAPIPGGGVLA-DVVAGLTNLGYPEADARR 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
              +VL  E ++ D +  +R AL+ ++ 
Sbjct: 173 VGTAVLDDEPDL-DVAGALRQALKRLAS 199


>gi|302527851|ref|ZP_07280193.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4]
 gi|302436746|gb|EFL08562.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4]
          Length = 198

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++V GV   +     TL+ L + G+   L     +R+D + L
Sbjct: 1   MISSVRGEVLSVGLDHVVVEVGGVGLAVQATPATLATL-RRGEQTRLHTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  +  R+ F LLQ+V G+G R+A+  L+ +   +L  +++  N  V+ Q+PGI  K 
Sbjct: 60  FGFAEEDARELFGLLQTVSGIGPRLALATLAVLEPDKLRAALVEGNITVLTQVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQATT 179
           A R+  EL+ K  +L               A + + P +     + AL  LG+   QA  
Sbjct: 120 AERLSLELRDKVTALG----------GASDAPVVTAPGALRGEVVEALAGLGFPAKQAEQ 169

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  VL  E +    S ++R AL A+
Sbjct: 170 AVDKVL-SEGDGHTTSSVLRAALAAL 194


>gi|114566956|ref|YP_754110.1| Holliday junction resolvasome DNA-binding subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|122318040|sp|Q0AX15|RUVA_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114337891|gb|ABI68739.1| Holliday junction DNA helicase subunit RuvA [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 199

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D ++IDV GV Y +    R    L + G+   +     + +++ +L
Sbjct: 1   MIAFLKGAVFERRPDSIIIDVNGVGYEVNIHSRLFPRLPQRGEPILIHTFLQVLENEFKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   + + F  L +V G+G++ A+ VLS +       +I  Q+ K + +IPG+  K 
Sbjct: 61  FGFLDQDELRLFKTLLTVSGIGSKGALAVLSTMEPLVFYRAIASQDEKTLVRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L  V       V KEQ  +          + AL  LGY + +   A
Sbjct: 121 AQRMIFELQDKVPELKLV------EVEKEQRPLLD------ELMEALEILGYSRSEVLPA 168

Query: 181 VVSVLKKEK--NIADDSQIIRLALRA 204
           ++ + + ++  NI +++  I+L L+A
Sbjct: 169 IMDLNRNKQLGNIVEEN--IKLVLKA 192


>gi|41407135|ref|NP_959971.1| Holliday junction DNA helicase motor protein [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118465009|ref|YP_882656.1| Holliday junction DNA helicase RuvA [Mycobacterium avium 104]
 gi|81414560|sp|Q741Q1|RUVA_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230566|sp|A0QIB8|RUVA_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|41395486|gb|AAS03354.1| RuvA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118166296|gb|ABK67193.1| holliday junction DNA helicase RuvA [Mycobacterium avium 104]
          Length = 199

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFTDAETRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGDVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +  +      +  N    H    P      + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKIGAAGAAGAPAGAARN---GHAVRGP-----VVEALVGLGFAAKQAEEA 171

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
              VL  E   A  S  +R AL
Sbjct: 172 TDKVLAAEPE-AGTSGALRAAL 192


>gi|239817626|ref|YP_002946536.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110]
 gi|259495659|sp|C5CM11|RUVA_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239804203|gb|ACS21270.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110]
          Length = 190

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       V++D  GV Y +  P+ T   L   G+  +L     +R+D   L
Sbjct: 1   MIGKLTGILAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG R A+G+LS ++  EL ++I  Q    + +IPGI  K 
Sbjct: 61  YGFGTAEERAAFRQLIKISGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E       L + +          QA I          + ALV LGY   +A  A
Sbjct: 121 AERLLLE---LKGKLGADIGLPAHAATDAQADI----------LQALVALGYSDKEAALA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +  L K+  +   S+ I+LAL+A++
Sbjct: 168 -LKALPKDATV---SEGIKLALKALA 189


>gi|206889338|ref|YP_002248715.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226698744|sp|B5YKF0|RUVA_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|206741276|gb|ACI20333.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 190

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 21/202 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG +  +  D ++I   G+ Y +  PIR    + +  +   +F    ++++ I +
Sbjct: 1   MLDFIKGKVITVKPDKIVIQTGGIGYSVKIPIRVSRYINR-DEETQIFTSLIVKEESIEI 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +R  F  L  + G+G ++A+ +LS      L + I  ++ K +++IPGI  K 
Sbjct: 60  YGFLESSERDLFEELIKIAGIGPKMAINILSTYDRETLYKIIDHEDIKSLSKIPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+G   SL            K+Q +         + +SAL+NLGY + +A   
Sbjct: 120 AQRILLELRGILPSLQ---------YEKDQKY--------DDILSALLNLGYKRLEAKEV 162

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +  +   EK   D++ IIR +L
Sbjct: 163 LDKIYNNEK---DEATIIRESL 181


>gi|224541319|ref|ZP_03681858.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525756|gb|EEF94861.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM
           15897]
          Length = 204

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 22/183 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG I GLY D+++ID  G+ Y ++   P        K GD  T+++   +++D +
Sbjct: 19  MYSYIKGIIAGLYSDHIVIDNHGIGYEVHVSNPYNF-----KKGDDATVYIYQQVKEDDL 73

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF    +++ F  L  V+G+G + A+G+L+      ++++I  +N   + +IPGI  
Sbjct: 74  TLFGFKKKEEKELFQKLILVKGIGCKTAIGILATGEIDAIIDAIEGKNIAYLKKIPGIGP 133

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A +I+ +L GK               +K        P +   A   L+ LGY Q    
Sbjct: 134 KAAQQIILDLHGK--------------FDKRAMKPLGSPDYE-EATEVLIALGYKQSDVE 178

Query: 179 TAV 181
            A+
Sbjct: 179 KAM 181


>gi|119944489|ref|YP_942169.1| Holliday junction DNA helicase RuvA [Psychromonas ingrahamii 37]
 gi|166230588|sp|A1SSV5|RUVA_PSYIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119863093|gb|ABM02570.1| Holliday junction DNA helicase subunit RuvA [Psychromonas
           ingrahamii 37]
          Length = 207

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 4/188 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+ +   L   G    ++    +R+D   L
Sbjct: 1   MIGRLRGVLLEKQPPEVLIEVSGIGYEVQLPMSSFYALPDAGQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V+ I       + ++PG+  K 
Sbjct: 61  YGFADKHERAMFRELIKVNGVGPKLALAILSGMSANQFVQCIHNDAVTTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +  + +         D      E  +  +  +    AISALV+LGY    
Sbjct: 121 AERLVVEMKDRLKNWTGADLLTPASDKMVFENEFTNSAASGNAKDEAISALVSLGYKPVL 180

Query: 177 ATTAVVSV 184
           A  A+  V
Sbjct: 181 AEKAIQQV 188


>gi|86608038|ref|YP_476800.1| Holliday junction DNA helicase RuvA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123738043|sp|Q2JNW8|RUVA_SYNJB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|86556580|gb|ABD01537.1| Holliday junction DNA helicase RuvA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 204

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 6/176 (3%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
           ++VQG+ Y +  P R L  L  +G+   +F    +R+ ++ L+GF S  +R  F+ L  V
Sbjct: 22  VEVQGIGYRVKAPGRFLKQLPAVGEPVRVFTHLVVRETELVLYGFGSPAERDLFVELIKV 81

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
            GVG  + + +L+     ELV++++ +N ++++  PG+  K A R+  ELK K       
Sbjct: 82  SGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVGHKTAQRLALELKTKLAHW--- 138

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
            +Q M   ++  A    MP        AL+ LGY   Q   A +  L       +D
Sbjct: 139 -RQGMGVADQPLAGGPPMP-IREEVEMALLALGY-STQEIQAALQALPTHPRPTED 191


>gi|149277483|ref|ZP_01883624.1| Holliday junction DNA helicase [Pedobacter sp. BAL39]
 gi|149231716|gb|EDM37094.1| Holliday junction DNA helicase [Pedobacter sp. BAL39]
          Length = 194

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 15/190 (7%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           Y++++  G+ Y I   + T S LG + + C ++   H+++D   L+GF  + +R+ F+ L
Sbjct: 16  YIVVEAGGIGYHINISLNTYSLLGDM-ERCKIYTWLHVKEDAHTLYGFAEEGERRLFLHL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL--KGKAI 133
            SV G+GA  A  +LS IT  E+  +I+  +  +I +I GI  K A R++ EL  K K  
Sbjct: 75  ISVSGIGANTARMMLSSITPIEIQTAIVNGDLPLIQRIKGIGAKSAQRLVLELQDKLKKE 134

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
              S++   ++   +E+            A+SAL+ LG+ +  A  A+ + +K       
Sbjct: 135 GSGSLIAAPLNHTVREE------------ALSALMMLGFAKQPAEKALDNAVKTGGVELS 182

Query: 194 DSQIIRLALR 203
             Q+I++AL+
Sbjct: 183 VEQMIKIALK 192


>gi|20807635|ref|NP_622806.1| Holliday junction resolvasome DNA-binding subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|22001976|sp|Q8RAN3|RUVA_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|20516178|gb|AAM24410.1| Holliday junction resolvasome DNA-binding subunit
           [Thermoanaerobacter tengcongensis MB4]
          Length = 187

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 77/142 (54%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE +  D+V+ID+ G+   I+ P  T+  L   G+   L+   ++R+D  ++
Sbjct: 1   MIEYIRGIIEDIGPDHVIIDLMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F  L SV GVG + A+ +LS +     ++++   + K++   PGI  K 
Sbjct: 61  FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD 142
           A RI+ ELK K      V ++D
Sbjct: 121 AERIILELKDKVPKEVVVPKED 142


>gi|303328183|ref|ZP_07358621.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3]
 gi|302861513|gb|EFL84449.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3]
          Length = 203

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQG-VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   + +  LI  +G V Y +  P  TL+ L   G+   L+    +R+D + 
Sbjct: 1   MIAYLEGRLAETWGNACLIVTEGGVGYEVALPAHTLAALPDRGEQLALYTSLAVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  +RQ F +L S+  VGAR A+ +LS     +L   ++  +   + ++ GI  K
Sbjct: 61  LFGFASFEERQTFEVLVSISKVGARTALAILSIFRPDDLRRLVLEDDVLALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  +  ELK K + +  V Q  +   +     +        + +  L NLGY +++   
Sbjct: 121 TAQHVFLELKYK-LKVEDVPQAAVLAASGRPGSVFR------DVLDGLANLGYAEEECAP 173

Query: 180 AVVSVLKKEKNI 191
            V  +L +E ++
Sbjct: 174 LVKKILHEEPDL 185


>gi|254976401|ref|ZP_05272873.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-66c26]
 gi|255093787|ref|ZP_05323265.1| Holliday junction DNA helicase RuvA [Clostridium difficile CIP
           107932]
 gi|255315538|ref|ZP_05357121.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-76w55]
 gi|255518201|ref|ZP_05385877.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-97b34]
 gi|255651317|ref|ZP_05398219.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-37x79]
 gi|260684381|ref|YP_003215666.1| Holliday junction DNA helicase RuvA [Clostridium difficile CD196]
 gi|260688040|ref|YP_003219174.1| Holliday junction DNA helicase RuvA [Clostridium difficile R20291]
 gi|306521149|ref|ZP_07407496.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-32g58]
 gi|260210544|emb|CBA65075.1| holliday junction DNA helicase [Clostridium difficile CD196]
 gi|260214057|emb|CBE06222.1| holliday junction DNA helicase [Clostridium difficile R20291]
          Length = 200

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 12/183 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  ++ +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFVSREELKMFELLTSVSKIGPKVALSILSFASSAQLGAYILSEDIGKLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178
           A RI+ ELK K          D + +  E   +   P+      ++ ALV LGY   ++ 
Sbjct: 120 AERIVLELKDKV---------DKNNIEFEPTLLSQKPTLISQDESVDALVALGYTLSESK 170

Query: 179 TAV 181
            AV
Sbjct: 171 EAV 173


>gi|282897835|ref|ZP_06305832.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9]
 gi|281197319|gb|EFA72218.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9]
          Length = 214

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 1   MIGKIKGNIEGL----YEDYVL-IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+       ++L ++V G+ Y +Y P R  + L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVTHIFTHYQIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+G  +A+ ++  +   ELV++II  N+ ++ Q PG
Sbjct: 61  ELPILYGFSSPAERDLFRHLLSVTGIGTAMAISLIDTLELPELVQAIISGNTIMLIQTPG 120

Query: 116 ISMKIASRIMTELKGKAI 133
           +  K A R+  ELKGK +
Sbjct: 121 VGKKTAERLCLELKGKLV 138


>gi|238796296|ref|ZP_04639805.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC
           43969]
 gi|238719741|gb|EEQ11548.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC
           43969]
          Length = 196

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 7/191 (3%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           VL++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R  F  L 
Sbjct: 8   VLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELI 67

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K +   L+
Sbjct: 68  KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 127

Query: 137 SVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
             +     D++      + I         A SALV LGY   +A+  V  + K     AD
Sbjct: 128 GDLFNNTGDITLPASTSSQISDA-DIEAEAASALVALGYKPQEASRLVSKIAKPG---AD 183

Query: 194 DSQIIRLALRA 204
              +IR ALRA
Sbjct: 184 CETLIRDALRA 194


>gi|297621995|ref|YP_003710132.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia
           chondrophila WSU 86-1044]
 gi|297377296|gb|ADI39126.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia
           chondrophila WSU 86-1044]
          Length = 202

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 29/201 (14%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           +++  G+ Y ++ P  T   L +IG    L     +R+    L+GF    +R  F  L +
Sbjct: 18  ILETGGIGYKVHIPASTYPKLPQIGQEALLHTSMVVREVSQTLYGFFYSEERDLFEELTT 77

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V G+G ++A+ ++  ++  E+  +I  Q   +I+++PGI  K A R++ EL+ K      
Sbjct: 78  VSGIGPKIALALIGHLSVEEMHAAIGNQEVAMISKVPGIGKKTAQRLVIELRDKV----- 132

Query: 138 VVQQDMSCVNKEQAHICSMPS-FAI------------NAISALVNLGYGQDQATTAVVSV 184
                      ++    S+PS FAI            +A+SAL+NLGY Q  A  A+   
Sbjct: 133 -----------QKGGKYSLPSDFAIQVGTDSRGQKIADAMSALLNLGYNQSTAQKALKKS 181

Query: 185 LKKEKNIADDSQIIRLALRAI 205
           L       D +++I  AL+ +
Sbjct: 182 LSNFPETIDLTELITDALKNV 202


>gi|319795920|ref|YP_004157560.1| holliday junction DNA helicase ruva [Variovorax paradoxus EPS]
 gi|315598383|gb|ADU39449.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus EPS]
          Length = 190

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       V++D  GV Y +  P+ T   L   G+  +L     +R+D   L
Sbjct: 1   MIGKLTGVLAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG R A+G+LS ++  EL ++I  Q    + +IPGI  K 
Sbjct: 61  YGFGTAEERAAFRQLIKITGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E       L + +       +  QA I          + AL+ LGY   +A  A
Sbjct: 121 AERLLLE---LKGKLGADIGLPTHAASDAQADI----------LQALIALGYSDKEAALA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +  L K+  +   S+ I+LAL+A++
Sbjct: 168 -LKALPKDATV---SEGIKLALKALA 189


>gi|91789933|ref|YP_550885.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666]
 gi|123164397|sp|Q124Q5|RUVA_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91699158|gb|ABE45987.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666]
          Length = 190

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       VL+D  GV Y +  P+ T   L  +G+  +L     +R+D   L
Sbjct: 1   MIGRISGQLAEKNPPEVLVDCNGVGYEVLVPMSTFYNLPGLGEKVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVG R A+ VLS ++  EL +++  Q +  I ++PGI  K 
Sbjct: 61  YGFGSATERAAFRQLIKISGVGPRTALSVLSGMSVEELAQAVTHQEAGRIIKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++         L   +  D+       +   S        + ALV LGY    A  A
Sbjct: 121 AERLLL-------ELKGKLGADIGVQVSVSSDSQSD------ILQALVALGYSDRDAALA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +  L K+  ++D    I+LAL+A++
Sbjct: 168 -LKALPKDIGVSDG---IKLALKALA 189


>gi|225352127|ref|ZP_03743150.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157374|gb|EEG70713.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 205

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 106/210 (50%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G ++ +     +I+V GV Y    P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLHGQVDFIDAASAIIEVGGVGYETRMPSADLASM-HAGQTVKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +A+ PG+  K 
Sbjct: 60  YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLAKAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG +I LS +        + E A        +   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-SIDLSQIEGASKEVRSAEDAG-------SEQVVEGLMSLGWRQQDALHA 171

Query: 181 VVSVLKKEK---NIADD--SQIIRLALRAI 205
           V +V +       + DD   ++++LAL ++
Sbjct: 172 VQTVCESNHINVPLRDDDVPRVLKLALASL 201


>gi|219871499|ref|YP_002475874.1| holliday junction DNA helicase motor protein [Haemophilus parasuis
           SH0165]
 gi|219691703|gb|ACL32926.1| holliday junction DNA helicase motor protein [Haemophilus parasuis
           SH0165]
          Length = 171

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 38  LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97
           L  + +   +F    +R+D   LFGF+   +R  F  L    GVG ++A+ +LS ++ +E
Sbjct: 7   LPDLNEDTMIFTHLVIREDAHLLFGFVQKQERMLFRELIKTNGVGPKLALAILSAMSVSE 66

Query: 98  LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP 157
            + +I  +    + +IPGI  K A R++ ELKGK    S++   ++S + +   ++ SM 
Sbjct: 67  FMSAIEQEELAKLIKIPGIGRKTAERLLVELKGK---FSTLFHHEISIL-QPSGNLLSMA 122

Query: 158 SFA-IN-AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           S + +N AI AL++LGY    A   V  V +K ++ ++  Q+IR AL+
Sbjct: 123 SMSPVNEAIDALISLGYKAADAEKMVKKVNRKSESTSE--QLIREALK 168


>gi|153839740|ref|ZP_01992407.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ3810]
 gi|149746738|gb|EDM57726.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ3810]
          Length = 204

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI++ G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEINGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A       S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K + +     Q+IR AL+++
Sbjct: 178 ASKVVSQIAKPDMS---SEQLIREALKSM 203


>gi|210622015|ref|ZP_03292958.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275]
 gi|210154460|gb|EEA85466.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275]
          Length = 200

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 17/201 (8%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           IKG IE +  D + ID   + Y I     T +   ++G+   +F +  +R+D++ L GF 
Sbjct: 5   IKGTIEEIGFDSITIDNNDIGYSILVSSNTAAQY-QVGEKAKVFTKLIVREDEMFLCGFH 63

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S+ +R  F +L S+  +G +V + +LS  T  +L   I+ ++   I++ PG+  K A RI
Sbjct: 64  SEEERNMFDMLTSISKIGPKVGLSILSFATPKQLGAYILSEDIAKISKAPGVGKKTAERI 123

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---AISALVNLGYGQDQATTAV 181
           + ELK K          D + +  E   + + P+ AI+   ++ AL+ LGY Q +A  AV
Sbjct: 124 ILELKDKI---------DKTQIEFEPTLLEAQPA-AISIDESVDALIALGYTQAEAKEAV 173

Query: 182 VSVLKKEKNIADDSQIIRLAL 202
               K +K   +  +IIR +L
Sbjct: 174 K---KTKKPGMETEEIIRKSL 191


>gi|212638555|ref|YP_002315075.1| Holliday junction DNA helicase RuvA [Anoxybacillus flavithermus
           WK1]
 gi|226725432|sp|B7GFM6|RUVA_ANOFW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212560035|gb|ACJ33090.1| Holliday junction resolvasome, DNA-binding subunit [Anoxybacillus
           flavithermus WK1]
          Length = 197

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +YV+I+  GV Y I+ P    S          ++   ++R+D + L
Sbjct: 1   MIEFIRGYVDYVCPEYVVIENNGVGYQIFTP-NPFSFQMNKQQQIVVYTYQYVREDVLAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     +LVE+I  +N + + + PG+  K 
Sbjct: 60  YGFHTRQERMLFAKLLQVSGIGPKGALAILAAGQLEQLVEAIEAENDQFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L ++V      +  E     +  S AI A+ A   LGY  D+    
Sbjct: 120 ARQMILDLKGK---LQAIVPDAFPNLFTEPLEETNALSEAIEALKA---LGYA-DKEIQK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           VV +L++E+        I+LAL+ +
Sbjct: 173 VVPMLRQER--LSTEGYIKLALQKL 195


>gi|296270037|ref|YP_003652669.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM
           43833]
 gi|296092824|gb|ADG88776.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM
           43833]
          Length = 206

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 18/177 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  +  +I+V G   +++C   TL+ L ++G+   L     +R+D + L
Sbjct: 1   MIASVAGKVAAIGPETAVIEVGGFGVLVHCTPATLAGL-RVGEPARLATALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R  F  L +V GVG R+A+ +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFASDDERAIFESLLTVNGVGPRLALAMLAVHSPNALRTAVASGDVKALTMVPGIGPKS 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGY 172
           A RIM EL+   G A + ++ +       +  +EQ H            + LV LGY
Sbjct: 120 AQRIMLELRDRLGPARATAAGMPDGRGGPSPWREQVH------------AGLVGLGY 164


>gi|320537837|ref|ZP_08037755.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421]
 gi|320145314|gb|EFW37012.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421]
          Length = 203

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 18/213 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     + + I+  G+ + +    ++L   G +G    +F   + R+DQ+RL
Sbjct: 1   MFNSINGVLTEKSSESICIETHGIEWSVAVSAKSLDSFGMVGATVRVFTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V G+G + A+ +LS ITA  L  ++   +  ++  IPG+  K 
Sbjct: 61  FGFPTREERALFLDLIKVDGIGPKQALRILSGITAENLETALEEGDVHLLQTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQAT- 178
           A +++  LKG+   LS++          E     S+P     + I ALV +GY +  AT 
Sbjct: 121 AQKMVLALKGQ---LSNI---------HEIGKSASIPQSEFEDIIQALVQMGYDRKAATE 168

Query: 179 --TAVVSVLKKE--KNIADDSQIIRLALRAISC 207
              A  S L+ +      +++++ R A+ A+S 
Sbjct: 169 QVEAAASALRSKGANPQENENELFRSAIVALST 201


>gi|298491329|ref|YP_003721506.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708]
 gi|298233247|gb|ADI64383.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708]
          Length = 212

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 65/115 (56%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
           ++V G+ Y +  P R  + L   GD   +F    +R++   L+GF S  +R  F  L SV
Sbjct: 24  LEVNGLGYDLQVPQRLANQLTTTGDVVQIFTHYQVREEVPLLYGFSSPAERDLFRHLLSV 83

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            G+GA +A+ +L  +   ELV++II  N++++ Q PG+  K A RI  ELK K I
Sbjct: 84  TGIGAALAITLLDTLELPELVQAIIAANTQILIQAPGVGKKTAERICLELKSKLI 138


>gi|289523150|ref|ZP_06440004.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503693|gb|EFD24857.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 196

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  + E+ V++DV G    I C    LS L K     TL     + +    L
Sbjct: 1   MIKFVSGAVVSVEENIVVLDVSGFGMEIICSREALS-LCKPSKKVTLPTYLAVSESGPSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R++F++L++V+G+GAR A+ +L  ++A EL+E I  +N + + ++PG+  K 
Sbjct: 60  YGFGDDFEREFFLMLKNVKGMGARTAISILRWLSARELIEIIAEKNLEKLEKVPGVGRKT 119

Query: 121 ASRIMTELKGKAISL 135
           A RI  ELK K   L
Sbjct: 120 AERICFELKDKTKKL 134


>gi|221134420|ref|ZP_03560725.1| Holliday junction DNA helicase RuvA [Glaciecola sp. HTCC2999]
          Length = 207

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 21/216 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I G +       ++I   G+ Y +   + ++  L   G   T+F    +R+D   L
Sbjct: 1   MIGLITGTLLAKQPPEIMIQAGGIGYEVSMSMHSIYALPTEGQPVTVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R  F  L    GVG ++A+ +LS ++  +L+ ++  ++   + +IPG+  K 
Sbjct: 61  FGFIEKEERTVFRELIKANGVGPKLAITILSGMSVQDLIRAVGYEDVSSLVKIPGVGKKT 120

Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           A R++ ELK +           A++L  V   D S        I  +      A+SALV 
Sbjct: 121 AERLVVELKDRLAKLTLTQPNEALTLPVVSATDGST-------IIPINDTREEALSALVA 173

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           LGY    A+  + SV     +     Q+IR AL+A+
Sbjct: 174 LGYKAPVASKIIQSVY---DDTMSSEQLIRAALKAM 206


>gi|255101977|ref|ZP_05330954.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-63q42]
 gi|255307845|ref|ZP_05352016.1| Holliday junction DNA helicase RuvA [Clostridium difficile ATCC
           43255]
 gi|328887746|emb|CAJ69694.2| Holliday junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile]
          Length = 200

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  +  +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178
           A RI+ ELK K          D + +  E   +   P+      ++ ALV LGY   ++ 
Sbjct: 120 AERIVLELKDKV---------DKNNIEFEPTLLSQKPTLISQDESVDALVALGYTLSESK 170

Query: 179 TAV 181
            AV
Sbjct: 171 EAV 173


>gi|157371017|ref|YP_001479006.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568]
 gi|167012663|sp|A8GFI8|RUVA_SERP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157322781|gb|ABV41878.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568]
          Length = 203

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L+  +  + S +    A   +       A SALV LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPTAAQAAELDAEAEAASALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K     AD   +IR ALRA
Sbjct: 181 VSKIAKPG---ADCETLIRDALRA 201


>gi|307564556|ref|ZP_07627096.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A]
 gi|307346714|gb|EFN92011.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A]
          Length = 205

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 13/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57
           MI  IKG +  +     +++  G+ Y I   + T S +    D      E   T  R D 
Sbjct: 1   MIEYIKGELIEMTPAIAIVEAYGIGYAINISLNTYSDIQGKKDIKLYIYEAIITGGRDDS 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF S  +R  + LL +V GVGA  A  +LS  T +EL   I     +++  + GI 
Sbjct: 61  YTLYGFSSKQERSLYKLLITVSGVGANTARMILSSFTPSELCNVISNGEERMLKSVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMS---CVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           +K A RI+ +L+ K      ++Q D++    VN    ++    +    AISAL  LG+  
Sbjct: 121 LKTAQRIIVDLRDK------IIQADIANELYVNTSSNNLNIDTAVKDEAISALTMLGFSP 174

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             ++  V+ VL K+ N+  + Q+++ AL+ I
Sbjct: 175 VSSSKVVIEVLTKDANLPVE-QVVKQALKII 204


>gi|255311319|ref|ZP_05353889.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276]
 gi|255317620|ref|ZP_05358866.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276s]
 gi|296436034|gb|ADH18208.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9768]
 gi|296437895|gb|ADH20056.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11074]
 gi|297140395|gb|ADH97153.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9301]
          Length = 200

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R ++     +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSFRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176
            A ++M +LK K  +L  +  ++   V    A+     SF    I AL+NLG+ +   D+
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
             T  V  L +E ++A+   ++ +ALR
Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198


>gi|254478024|ref|ZP_05091408.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum
           DSM 12653]
 gi|214036028|gb|EEB76718.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum
           DSM 12653]
          Length = 187

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 76/142 (53%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE +  D+V+ID  G+   I+ P  T+  L   G+   L+   ++R+D  ++
Sbjct: 1   MIEYIRGIIEDIGPDHVIIDFMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F  L SV GVG + A+ +LS +     ++++   + K++   PGI  K 
Sbjct: 61  FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD 142
           A RI+ ELK K      V ++D
Sbjct: 121 AERIILELKDKVPKEVVVPKED 142


>gi|299141888|ref|ZP_07035023.1| holliday junction DNA helicase RuvA [Prevotella oris C735]
 gi|298576739|gb|EFI48610.1| holliday junction DNA helicase RuvA [Prevotella oris C735]
          Length = 205

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  IKG +  L     +++  GV Y +   + T S + GK      L+V     T  R 
Sbjct: 1   MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGIQGK--KAVKLYVHEALTTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF++  +R+ + LL +V GVGA  A  +LS ++  EL  +I   + K+I  + G
Sbjct: 59  DSFTLYGFVNKQERELYRLLITVSGVGANTARMMLSSMSPAELCNAIANGDEKMIKAVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I +K A R++ +LK K I  S +   D   V  +++ I    +    A++AL  LG+   
Sbjct: 119 IGLKTAQRVIVDLKDK-IMASGIA--DELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPA 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
                VV++L+K+ ++  + Q+++ AL+
Sbjct: 176 PVAKVVVAILQKQADMPVE-QVVKEALK 202


>gi|290961821|ref|YP_003493003.1| Holliday junction DNA helicase [Streptomyces scabiei 87.22]
 gi|260651347|emb|CBG74469.1| holliday junction DNA helicase [Streptomyces scabiei 87.22]
          Length = 201

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 17/175 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V G+   + C   TLS L + G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RRGQQAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  + 
Sbjct: 60  YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALIAVPGIGKRG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ ELK   G+ +  +  V   ++   ++Q H            +AL+ LGY
Sbjct: 120 AQKLLLELKDRLGEPVG-APAVGTPVTQGWRDQLH------------AALIGLGY 161


>gi|126700422|ref|YP_001089319.1| Holliday junction DNA helicase RuvA [Clostridium difficile 630]
          Length = 203

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 4   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  +  +L   I+ ++   +++ PG+  K 
Sbjct: 63  CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178
           A RI+ ELK K          D + +  E   +   P+      ++ ALV LGY   ++ 
Sbjct: 123 AERIVLELKDKV---------DKNNIEFEPTLLSQKPTLISQDESVDALVALGYTLSESK 173

Query: 179 TAV 181
            AV
Sbjct: 174 EAV 176


>gi|331663357|ref|ZP_08364267.1| holliday junction DNA helicase RuvA [Escherichia coli TA143]
 gi|331059156|gb|EGI31133.1| holliday junction DNA helicase RuvA [Escherichia coli TA143]
          Length = 188

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 3/188 (1%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           VLI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L 
Sbjct: 2   VLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 61

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
              GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L 
Sbjct: 62  KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 121

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
             +    + +        +       A++ALV LGY   +A+  V  + + +   A    
Sbjct: 122 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSET 178

Query: 197 IIRLALRA 204
           +IR ALRA
Sbjct: 179 LIREALRA 186


>gi|323342039|ref|ZP_08082272.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464464|gb|EFY09657.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 195

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 15/158 (9%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           DYV++D  G+ Y ++C    +  L +   F T     H+R+D I LFGF+   +   F  
Sbjct: 15  DYVVVDNHGIGYQVFCGNPEMVTLNESIIFHTY---QHVREDAIILFGFVEKRELDIFRQ 71

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L +V+GVG +  + +LSR +  ++V +I  ++   + ++PG+  K+AS++M +LKGK I+
Sbjct: 72  LITVKGVGPKTGITILSRFSGDDIVRAIDQEDMAFLKKLPGVGPKMASQMMLDLKGKFIA 131

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
                  D     K+   +         A+ AL +LG+
Sbjct: 132 ------SDTPSTTKKALPLVD------EALDALGDLGF 157


>gi|332519991|ref|ZP_08396455.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4]
 gi|332044550|gb|EGI80744.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4]
          Length = 193

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  IKG +       V+ID  GV Y++   + T S   +I D  ++ + TH+  ++D  
Sbjct: 1   MITHIKGKMVEKNPTDVVIDCNGVGYLLNISLNTFS---QIPDQESIHLFTHLQVKEDAH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF +  +R+ F LL SV G+G   A  +LS +T  ++ E I   +  +I  I GI  
Sbjct: 58  SLYGFFTKGEREVFRLLISVSGIGTNTARTMLSSLTPKQIREGIATADVALIQSIKGIGA 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ +LK K + +  +   D   VN+   +          A+SAL  LG+ + QA 
Sbjct: 118 KTAQRVILDLKDKILKIYDI---DEVSVNRNNTN-------KDEALSALEVLGFAKKQAE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
             V  ++  +   A    II+LAL+
Sbjct: 168 RVVDKIVVAQPE-ASVEAIIKLALK 191


>gi|146299412|ref|YP_001194003.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae
           UW101]
 gi|57236796|gb|AAW49008.1| RuvA [Flavobacterium johnsoniae UW101]
 gi|146153830|gb|ABQ04684.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae
           UW101]
          Length = 193

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 22/210 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       V+ID  GV Y +   + T S +    DF  L+    +++D   L
Sbjct: 1   MIAHLQGKLVEKNPTEVVIDCGGVGYHVNISLHTFSLIPN-ADFIKLYTHLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F +L SV G+GA +A  +LS I   +++ +I   +  VI  I GI  K 
Sbjct: 60  YGFVEKSEREIFRMLLSVSGIGAGIARTMLSSIEPRQIINAIASGDVGVIQSIKGIGNKT 119

Query: 121 ASRIMTELKGKAISLS-----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A R++ +LK K + L      SVVQ +    N+++            A+SAL  LG+ + 
Sbjct: 120 AQRVILDLKEKVLKLYDLDEVSVVQNN---TNRDE------------ALSALEVLGFVR- 163

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + +  VV  + KE   A    II+ AL+++
Sbjct: 164 KTSEKVVEKIVKEDPEATVETIIKKALKSL 193


>gi|283783300|ref|YP_003374054.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05]
 gi|283441415|gb|ADB13881.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05]
          Length = 209

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LI V GV Y  Y P + LS L + G    ++    + QD + L
Sbjct: 1   MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+ +Q V G+G +VA+ +LS +    L+++I   +   ++  PG+  K 
Sbjct: 60  YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDCLLQAISEGDVTSLSSAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG   SL S +  D S  +  Q++   + S     I  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELKG---SLDSSILAD-SSNDSTQSNKQIVDSSVQCVIEGLVSLGWRQVDAQRA 175

Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAI 205
           V  V   + NI      AD   ++R+AL ++
Sbjct: 176 VEQVC-ADNNISTPISDADLPNVLRMALASL 205


>gi|75909032|ref|YP_323328.1| Holliday junction DNA helicase RuvA [Anabaena variabilis ATCC
           29413]
 gi|123758778|sp|Q3M9A3|RUVA_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|75702757|gb|ABA22433.1| Holliday junction DNA helicase subunit RuvA [Anabaena variabilis
           ATCC 29413]
          Length = 213

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 5/138 (3%)

Query: 1   MIGKIKGNIEGLYE---DYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+     + V++  +V G+ Y +  P R    L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV GVGA  A+ +L  +   +LV++II  N +++ Q PG
Sbjct: 61  EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAI 133
           +  KIA RI  ELK K I
Sbjct: 121 VGKKIADRICLELKAKLI 138


>gi|222099496|ref|YP_002534064.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|61657322|emb|CAI44241.1| holliday junction DNA helicase [Thermotoga neapolitana]
 gi|221571886|gb|ACM22698.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 191

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 21/184 (11%)

Query: 23  GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82
           G+ + I C  +T   L +  + C L+    + QD + L+GF     +  F+ L  V  +G
Sbjct: 27  GIVFEIACDTQTCEELEENRE-CYLYTFLSVSQDGVALYGFSDRKKKDLFLSLMKVSRLG 85

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD 142
            + A+ +LS      L+  I  Q+ + +++IPGIS K A RI+ ELKGK     S V +D
Sbjct: 86  PKTALKILSSEDVDTLISMINSQDVEGLSKIPGISRKTAERIVMELKGK---FESTVLKD 142

Query: 143 MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLAL 202
           +   ++              ++ ALV+LGY + QA  A+  VL   K+    S++I+ AL
Sbjct: 143 LKTYHE--------------SLEALVSLGYPEKQARKAIKEVL---KDGMSTSEVIKEAL 185

Query: 203 RAIS 206
           R +S
Sbjct: 186 RILS 189


>gi|294635834|ref|ZP_06714289.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685]
 gi|291090806|gb|EFE23367.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685]
          Length = 195

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           VL++  GV Y +  P+     L + G    +F    +R+D   L+GF +  +R  F  L 
Sbjct: 10  VLLEAGGVGYEVQMPMTCFYELPQPGSEAVIFTHFVVREDAQLLYGFNNKQERALFRELI 69

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K A R++ E+K +   LS
Sbjct: 70  KVNGVGPKLALAILSGMSAQQFVAAVEREEVAALIKLPGVGKKTAERLVVEMKDRFKGLS 129

Query: 137 S---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
                   D+    + QA   +       A++AL+ LGY   +A+  V  V       AD
Sbjct: 130 GDLFTPSDDLPPSAQPQAQADA----EGEAVAALIALGYKPQEASRLVNRVASVG---AD 182

Query: 194 DSQIIRLALRA 204
              +IR ALRA
Sbjct: 183 SETLIRDALRA 193


>gi|157364836|ref|YP_001471603.1| RuvA domain-containing protein [Thermotoga lettingae TMO]
 gi|157315440|gb|ABV34539.1| RuvA domain protein [Thermotoga lettingae TMO]
          Length = 186

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 21/202 (10%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           +KG +       V++++ G    I C I TL    +IG    L       Q+ I ++GFL
Sbjct: 3   VKGTVHSKNGSSVILEINGFLIKILCDIETLEK-AQIGQTVQLHTHLEFSQEGITIYGFL 61

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S      F  +  V  +G + A+ ++S     ELV  II Q+ + +++ PGI  K A R+
Sbjct: 62  SKERLYVFEKILKVSKIGPKTALRIVSTSEPEELVHLIISQDVEKLSRFPGIGKKTAERL 121

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + ELK +   + S   +++S                 +AI ALV LG+G+ ++  A  SV
Sbjct: 122 IAELKDEEFEIKSDYSKELS-----------------DAIDALVALGFGKIESREAAKSV 164

Query: 185 LKKEKNIADDSQIIRLALRAIS 206
               K      QI++ AL+ +S
Sbjct: 165 YHSSKKA---EQIVKEALKMLS 183


>gi|254429429|ref|ZP_05043136.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881]
 gi|196195598|gb|EDX90557.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881]
          Length = 200

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y +  P+     L   G   TL     +R+D   L
Sbjct: 1   MIGQLRGTLLEKRPPVLLLDVGGVGYEVEAPMTVFYDLPDAGAELTLHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  V GVG ++A+ +LS I A  L   I  Q++  + ++PGI  K 
Sbjct: 61  YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  +   +          V+  Q           +AI+AL  LGY +++   A
Sbjct: 121 AERLVIEMSDRLDKIDGGPVSLPGRVDTRQPDDARS-----DAIAALEALGY-RNKDAAA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            V+    E  ++ + Q+IR AL++++
Sbjct: 175 AVAKAADEDGLSSE-QLIRKALKSLA 199


>gi|258653556|ref|YP_003202712.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM
           44233]
 gi|258556781|gb|ACV79723.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM
           44233]
          Length = 207

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 5/177 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  ++ D+ +I+V GV   +      L+ L + G+   L+    +R+D + L
Sbjct: 1   MISSVRGEVLAIHLDHAVIEVGGVGLAVRTTPAALAEL-RRGESARLWTTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F L+QSV GVG ++A+ +L+ +   EL  ++   ++  + + PGI  K 
Sbjct: 60  FGFTTTAGKELFELVQSVSGVGPKIALALLAVLDPDELRRALSAGDTATLCRAPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ EL+ K   + S               +   P        ALV LG+   QA
Sbjct: 120 AERLVLELRDKVGPVGSPAAGVAPVAGAASGSLAWRP----QVTDALVGLGFTAKQA 172


>gi|166154716|ref|YP_001654834.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           434/Bu]
 gi|166155591|ref|YP_001653846.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335990|ref|ZP_07224234.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis L2tet1]
 gi|229560018|sp|B0B875|RUVA_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560020|sp|B0BCE0|RUVA_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|165930704|emb|CAP04201.1| holliday junction DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|165931579|emb|CAP07155.1| holliday junction DNA helicase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 200

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           M   IKG +  +   YV+I+  G+ Y I    R L  L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHIDGSYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176
            A ++M +LK K  +L  +  ++   V    A+     SF    I AL+NLG+ +   D+
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
             T  V  L +E ++A+   ++ +ALR
Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198


>gi|319947801|ref|ZP_08021995.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4]
 gi|319438525|gb|EFV93451.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4]
          Length = 199

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  D  +++  GV  +++     L+ L + G    L  E  +R+D + L
Sbjct: 1   MIASIRGTVAEIGLDRCVVETGGVGVLVHATPAALAGL-RRGAEGMLHTELVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   RQ F+ +Q+V GVG R+A+ +++ +    L+ ++   + K +  +PG+  + 
Sbjct: 60  YGFDSVDARQLFLTVQTVSGVGPRLALAIVATLEPEALIRALGTGDVKALTLVPGVGKRT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELK K   +  V   D   S V   +A        A     AL  LG+   +A 
Sbjct: 120 AERMVLELKDK---VGPVPDGDAASSVVGNGRA------PAATEVADALEGLGFSAAEAE 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
               +VL  + ++ D +Q +RLAL+++ 
Sbjct: 171 KTATAVLDSQPDL-DPAQALRLALKSLG 197


>gi|281426165|ref|ZP_06257078.1| holliday junction DNA helicase RuvA [Prevotella oris F0302]
 gi|281399741|gb|EFB30572.1| holliday junction DNA helicase RuvA [Prevotella oris F0302]
          Length = 205

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  IKG +  L     +++  GV Y +   + T S + GK      L+V     T  R 
Sbjct: 1   MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGIQGK--KAVKLYVHEALTTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF++  +R+ + LL +V GVGA  A  +LS ++  EL  +I   + K+I  + G
Sbjct: 59  DSFTLYGFVNKQERELYRLLITVSGVGANTACMMLSSMSPAELCNAIANGDEKMIKAVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I +K A R++ +LK K I  S +   D   V  +++ I    +    A++AL  LG+   
Sbjct: 119 IGLKTAQRVIVDLKDK-IMASGIA--DELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPA 175

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
                VV++L+K+ ++  + Q+++ AL+
Sbjct: 176 PVAKVVVAILQKQADMPVE-QVVKEALK 202


>gi|320334037|ref|YP_004170748.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           maricopensis DSM 21211]
 gi|319755326|gb|ADV67083.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           maricopensis DSM 21211]
          Length = 200

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 9/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +I  + G +  + +   +I   GV Y + CP  TL+ L ++ D   L     +R+D   L
Sbjct: 4   VIAYLTGTVRDVRDTSAVIVAGGVGYEVLCPAPTLAKL-RVNDTAELHTRMVVREDAWTL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF      + F LL SV GVG ++ + +LS +    +   I+  +SK++A + G+  K 
Sbjct: 63  YGFQDQDSIRLFDLLTSVTGVGPKLGLALLSAMPPHVIAGGILGSDSKLLASVSGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K       V + ++  +          +   +A+ AL+ LG+ + Q    
Sbjct: 123 AERLVLELQNK-------VPEHLAAASGRTTAPVVNSTVGQDAVEALLALGFREAQVRAV 175

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +  +L  + N   D Q+IR +L
Sbjct: 176 ISELLSADPNATAD-QLIRKSL 196


>gi|237751366|ref|ZP_04581846.1| holliday junction DNA helicase motor protein [Helicobacter bilis
           ATCC 43879]
 gi|229372732|gb|EEO23123.1| holliday junction DNA helicase motor protein [Helicobacter bilis
           ATCC 43879]
          Length = 189

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 18/181 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KGNIE L    V ++V GV Y++   + T + L       TL +   +R+D   L
Sbjct: 1   MIVRLKGNIEKLLPTGVELEVSGVTYMVEISLLTSAALQN-KTHVTLEIAEIIREDSHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+ L  V GVGA++A+ +LS  +  + +  +   N   +  + GI  K+
Sbjct: 60  YGFETRREREVFLQLLKVNGVGAKIALMILSSYSVEQFLAIVQTNNLAALKGVKGIGTKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM EL G   S+     Q  + VN + AH             ALV LG+   Q T A
Sbjct: 120 AGKIMLELAGYTQSI-----QTPNNVNVQLAH------------EALVALGFKDTQITQA 162

Query: 181 V 181
           +
Sbjct: 163 L 163


>gi|78357366|ref|YP_388815.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|90134880|sp|Q30YX6|RUVA_DESDG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78219771|gb|ABB39120.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 201

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQG-VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  + E   ++  QG V Y ++ P   L+ L + G   + ++ T +R+D + 
Sbjct: 1   MIAYIEGRVAEVTEQSCVVVTQGGVGYEVHLPSHLLARLPEQGAAVSFYIHTVVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +RQ F++L S+  VGA+ A+ VLS     +L   +   +   + ++ GI  K
Sbjct: 61  LYGFSGWDERQTFLVLISISKVGAKTALAVLSLYRPDDLRRIVADDDVTALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQAT 178
            A  I+ ELK K           +  +         +P   + +A+ AL NLGY +++A 
Sbjct: 121 SAQHILLELKYKL---------KVESLPASAGLAAGVPGSVLRDAVQALGNLGYAEEEAA 171

Query: 179 TAVVSVLKKEKNI 191
             + ++LK++ ++
Sbjct: 172 PVLKNILKQDPDL 184


>gi|307720862|ref|YP_003892002.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978955|gb|ADN08990.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas
           autotrophica DSM 16294]
          Length = 189

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 14/181 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E     YV ++VQG+ Y ++  + T S L K  +  +LF    +R+D   L
Sbjct: 1   MIVGLHGKVEYKEPAYVHVNVQGIVYEVFISLHTFSALPK--EDVSLFTTQIIREDAQLL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +++ F  L  + GVG +VAM + S  T ++    I  ++   + ++PGI  K 
Sbjct: 59  FGFMDMSEKKMFSRLIKINGVGPKVAMAICSTYTPSQFATVINNKDVNGVKKVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL G      + +  D +     QA           A  AL  LG+ +D+ + A
Sbjct: 119 AGRILVELNG----FDAEILGDSATPQASQAF--------NEASEALEALGFKKDKISKA 166

Query: 181 V 181
           +
Sbjct: 167 L 167


>gi|302866772|ref|YP_003835409.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC
           27029]
 gi|315503187|ref|YP_004082074.1| holliday junction DNA helicase ruva [Micromonospora sp. L5]
 gi|302569631|gb|ADL45833.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC
           27029]
 gi|315409806|gb|ADU07923.1| Holliday junction DNA helicase RuvA [Micromonospora sp. L5]
          Length = 200

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +++V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGTVTATGPDHAVVEVGGIGLAVQCAPGTLADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +Q F LLQ+  GVG R+A  VL+  T   + ++I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELK 129
           A R++ EL+
Sbjct: 120 AERLVLELR 128


>gi|294790877|ref|ZP_06756035.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304]
 gi|294458774|gb|EFG27127.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304]
          Length = 209

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 25/197 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR------ 54
           MI  ++G+I  +  D ++IDV GV + +    R         D   L   +H R      
Sbjct: 1   MIASLEGDILSIEPDGIVIDVNGVGFSVRMSAR---------DTAQLHAGSHERIITLMT 51

Query: 55  --QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
             +D + L+GFL+   ++ F+ LQ V G+G RVAM +LS ++A EL  +I   +   + +
Sbjct: 52  VSRDALSLYGFLNPSSKKLFIQLQKVSGIGPRVAMAILSTLSAEELATAIRDNDVTALTR 111

Query: 113 IPGISMKIASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
            PG+  K A +I+ EL G     +L    +Q      ++Q H           I  LV+L
Sbjct: 112 APGLGRKGAQKIILELHGTIDFTNLDPDQEQAAGHDTEKQDHNMR------QVILGLVSL 165

Query: 171 GYGQDQATTAVVSVLKK 187
           G+ Q  A  A    +K+
Sbjct: 166 GWQQRDAFGATKEAMKQ 182


>gi|251789856|ref|YP_003004577.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591]
 gi|247538477|gb|ACT07098.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591]
          Length = 205

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 13/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y ++ P+     L  +G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLIEAGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  Q    + ++PG+  K 
Sbjct: 61  FGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA------ISALVNLGYGQ 174
           A R++ E+K +   L+     D+   + + A        A  A       +ALV LGY  
Sbjct: 121 AERLVVEMKDRFKGLNG----DLFNADSDMALPAQTGEAAPQADPQAEAEAALVALGYKP 176

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204
            +A+  V  V    +  AD   +IR ALRA
Sbjct: 177 QEASRMVNKV---SRPGADCETLIRDALRA 203


>gi|227329529|ref|ZP_03833553.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 205

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 17/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS--------ALVNLGY 172
           A R++ E+K +   LS  +   +S +        + P+ A + +         ALV LGY
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIP------LASPATADSRVGEPEAEAAAALVALGY 174

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
              +A+  +  + + +   AD   +IR ALRA
Sbjct: 175 KPQEASRMISKIARPD---ADCETLIRDALRA 203


>gi|304383692|ref|ZP_07366151.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           marshii DSM 16973]
 gi|304335216|gb|EFM01487.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           marshii DSM 16973]
          Length = 204

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHM----RQ 55
           MI  IKG +        +I+  GV Y +   + T + + GK      L+V   +    R 
Sbjct: 1   MIEYIKGELSEATPALAVIEASGVGYALNISLNTYTSVQGK--KEVKLYVHEVLSAGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   L+GF +  +R+ + LL SV GVGA  A  +LS +T  EL   I   + +++  + G
Sbjct: 59  DSFTLYGFFTRQERELYRLLISVSGVGANTARMILSAMTTAELCNVISTGDERMLKGVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQ 174
           I +K A RI+ +LK K +  SS + Q++        H+ +  S   + A+ AL  LG+  
Sbjct: 119 IGLKTAQRIIIDLKDKIV--SSGIAQELPTT---AGHVVATNSAVKDEAVGALTMLGFSP 173

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             ++  VV +LK   ++  + Q+++ AL+ I
Sbjct: 174 APSSKVVVEILKMHPDLPVE-QVVKQALKMI 203


>gi|255656790|ref|ZP_05402199.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-23m63]
 gi|296452380|ref|ZP_06894081.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP08]
 gi|296877729|ref|ZP_06901756.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP07]
 gi|296258710|gb|EFH05604.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP08]
 gi|296431262|gb|EFH17082.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP07]
          Length = 200

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  +  +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178
           A RI+ ELK K          D + +  E   +   P+      ++ ALV LGY   ++ 
Sbjct: 120 AERIVLELKDKV---------DKNNIEFEPTLLSQKPTLISQDESVDALVALGYTLAESK 170

Query: 179 TAV 181
            AV
Sbjct: 171 EAV 173


>gi|50121417|ref|YP_050584.1| Holliday junction DNA helicase RuvA [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644878|sp|Q6D4A1|RUVA_ERWCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49611943|emb|CAG75392.1| holliday junction DNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 205

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 17/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS--------ALVNLGY 172
           A R++ E+K +   LS  +   +S +        + P+   N +         ALV LGY
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNSVSDIP------LTSPANVDNRVGEPEAEAAAALVALGY 174

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
              +A+  +  + + +   AD   +IR ALRA
Sbjct: 175 KPQEASRMISKIARPD---ADCETLIRDALRA 203


>gi|281412224|ref|YP_003346303.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila
           RKU-10]
 gi|281373327|gb|ADA66889.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila
           RKU-10]
          Length = 188

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++ + GV + I C ++T   + K G+ C L    ++ QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK +     S   +DM   ++              ++ ALV+LGY + QA  
Sbjct: 120 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALVSLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKHVYREGMKT---SELIKEALKFLS 186


>gi|167745589|ref|ZP_02417716.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662]
 gi|167654901|gb|EDR99030.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662]
          Length = 187

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 14/188 (7%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           +++  G+ Y I  P       G IG    ++   H+R+D I LFGF +  + + F LL  
Sbjct: 7   VVENNGIGYDIMMPAGQ-EFPGGIGQEVRIYTHMHVREDDISLFGFRTKEELEAFELLIG 65

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V G+G +V + VLS ++  EL  +++  +SK I++ PG+  K A +++ EL+ K +    
Sbjct: 66  VSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKGAKKLILELRDK-LDFEE 124

Query: 138 VVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS- 195
             Q + M         + +  S A+ A   LV+LGY + +A  A+    KK +N A+ S 
Sbjct: 125 FEQAEPMDFA----GDLPAEDSVAVTA-QGLVSLGYSRSEAMMAI----KKVENAAEYSP 175

Query: 196 -QIIRLAL 202
            Q+++ AL
Sbjct: 176 EQLLKKAL 183


>gi|313897511|ref|ZP_07831054.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2]
 gi|312957881|gb|EFR39506.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2]
          Length = 212

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 25/190 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           MI  IKG I     D ++I+  G+ Y +Y   P+       ++     L+   H+R+D I
Sbjct: 20  MIAFIKGIIHSYSNDSLIIENNGIGYRVYVANPMAV-----RLNAEVILYTYQHVREDAI 74

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF +  +   F+ L SV+GVG + A+G+L    A  ++ +I   + K +  +PGI  
Sbjct: 75  TLFGFTTMEEHDLFLQLISVKGVGPKTALGMLGVCPARNMIAAIESNDVKTLKGLPGIGA 134

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K AS+I+ +LKGK      +V++      KE   +       ++A+ AL  LGY      
Sbjct: 135 KTASQIVLDLKGK------LVEEVTELEVKENEQL-------LDALEALKALGY-----K 176

Query: 179 TAVVSVLKKE 188
            A ++ +KKE
Sbjct: 177 NAELNSIKKE 186


>gi|61657364|emb|CAI44281.1| holliday junction DNA helicase [Thermotoga naphthophila RKU-10]
          Length = 191

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++ + GV + I C ++T   + K G+ C L    ++ QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK +     S   +DM   ++              ++ ALV+LGY + QA  
Sbjct: 123 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALVSLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKHVYREGMKT---SELIKEALKFLS 189


>gi|312870745|ref|ZP_07730852.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           3008A-a]
 gi|311093757|gb|EFQ52094.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           3008A-a]
          Length = 194

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 24/208 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P        K   +C +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           AS+I+ +LKGK        L  ++ QD   +               +AI AL  LGY  +
Sbjct: 118 ASQIILDLKGKLDVSDQPQLELILDQDNPALK--------------DAILALSALGYS-N 162

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
           +    +   L+K  N + D   I+ AL+
Sbjct: 163 KEVEKIKPKLEKLPNQSAD-HYIKEALK 189


>gi|283769122|ref|ZP_06342027.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219]
 gi|283104308|gb|EFC05686.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219]
          Length = 192

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 14/172 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  + +DY++I+ QG+ +++Y P  +L     +G+   +F    + ++ +RL
Sbjct: 1   MIAFIQGVITEIGDDYIVINHQGLGWLVYYP-HSLEV--HVGEELQVFTHMSVSENDMRL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++  F+ L SV+G+G + AM +L +     + E+I   +   + ++PGI  K 
Sbjct: 58  YGFSSSKEKTLFLNLISVKGLGPKTAMTMLQKSGYALITEAISKGDVAALKKLPGIGAKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           AS+I+ +L+GK +            V      + + P     A+ AL N GY
Sbjct: 118 ASQIVLDLQGKLV-----------AVEVSSTKMMNYPLEIQEALEALKNFGY 158


>gi|159027980|emb|CAO87940.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 209

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 11/183 (6%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +++DV  + Y I  P R    +GK   D   +F    +R+DQ  L+GF +  +R  F  L
Sbjct: 22  LILDVNQIGYEIQIPSRLALDIGKDNNDSRQIFTHLLLREDQPLLYGFGTAPERDLFRQL 81

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV GVGA++A+ ++  +   ELV +I+  N+K++++ PG+ +K A RI  ELK K  + 
Sbjct: 82  LSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTPGVGLKTAERIALELKTKLAAW 141

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
             + +   +           +P+  I  +    L+ LGY Q++   A ++VL ++   + 
Sbjct: 142 RQLKEATTTTT-------AILPAAEILEDVQMTLLALGYSQEEIDRA-IAVLSQDALFSK 193

Query: 194 DSQ 196
           ++Q
Sbjct: 194 NTQ 196


>gi|46907761|ref|YP_014150.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47094257|ref|ZP_00231966.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b
           H7858]
 gi|226224134|ref|YP_002758241.1| Holliday junction DNA helicase (ruvA) [Listeria monocytogenes
           Clip81459]
 gi|254824408|ref|ZP_05229409.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J1-194]
 gi|254852157|ref|ZP_05241505.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           R2-503]
 gi|254931468|ref|ZP_05264827.1| holliday junction DNA helicase RuvA [Listeria monocytogenes
           HPB2262]
 gi|254992897|ref|ZP_05275087.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-064]
 gi|255520701|ref|ZP_05387938.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J1-175]
 gi|300764800|ref|ZP_07074790.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           N1-017]
 gi|67461453|sp|Q71ZD7|RUVA_LISMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|259495649|sp|C1KVI0|RUVA_LISMC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46881030|gb|AAT04327.1| holliday junction DNA helicase RuvA [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017363|gb|EAL08187.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876596|emb|CAS05305.1| Putative Holliday junction DNA helicase (ruvA) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605460|gb|EEW18068.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           R2-503]
 gi|293583020|gb|EFF95052.1| holliday junction DNA helicase RuvA [Listeria monocytogenes
           HPB2262]
 gi|293593643|gb|EFG01404.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J1-194]
 gi|300514476|gb|EFK41533.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           N1-017]
 gi|328474893|gb|EGF45693.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 220]
 gi|332311975|gb|EGJ25070.1| Holliday junction ATP-dependent DNA helicase ruvA [Listeria
           monocytogenes str. Scott A]
          Length = 201

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRE-LKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  L KE+++  D+  I+LAL+ ++
Sbjct: 176 VIPKLSKEEDLTSDA-YIKLALQLMT 200


>gi|319953601|ref|YP_004164868.1| holliday junction DNA helicase subunit ruva [Cellulophaga algicola
           DSM 14237]
 gi|319422261|gb|ADV49370.1| Holliday junction DNA helicase subunit RuvA [Cellulophaga algicola
           DSM 14237]
          Length = 193

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      +V+I+  GV Y +   + T S +    +   LF    +++D   L
Sbjct: 1   MIHHLKGKLVEKNPTHVVIECGGVGYFVNISLHTFSKITD-AENIQLFTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+GA +A  +LS ++  ++ ++I   N   I  I GI  K 
Sbjct: 60  FGFSEKSEREIFRLLVSVSGIGASIARTMLSSMSPMQIRDAIATANVSAIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ +LK K + +  +  V    +  NK++            A+SAL  LG+ + Q+ 
Sbjct: 120 AQRVILDLKDKILKIYDIDEVSSISNNTNKDE------------ALSALEVLGFIRKQSE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
             V  VL ++ +++ +  II+L+L+
Sbjct: 168 KIVDKVLAQDASLSVE-DIIKLSLK 191


>gi|17227871|ref|NP_484419.1| Holliday junction DNA helicase RuvA [Nostoc sp. PCC 7120]
 gi|20455248|sp|Q8YZT2|RUVA_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17129720|dbj|BAB72333.1| holliday junction DNA helicase [Nostoc sp. PCC 7120]
          Length = 213

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 63/115 (54%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
           ++V G+ Y +  P R    L   GD   +F    +R++   L+GF S  +R  F  L SV
Sbjct: 24  LEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVREEIPLLYGFSSPAERDLFRHLLSV 83

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            GVGA  A+ +L  +   +LV++II  N +++ Q PG+  KIA R+  ELK K I
Sbjct: 84  SGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPGVGKKIAERVCLELKAKLI 138


>gi|261821379|ref|YP_003259485.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae
           WPP163]
 gi|261605392|gb|ACX87878.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae
           WPP163]
          Length = 205

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 17/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS--------ALVNLGY 172
           A R++ E+K +   LS  +   +S +        + P+ A + +         ALV LGY
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIP------LASPASADSRVGEPEVEAAAALVALGY 174

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
              +A+  +  + + +   AD   +IR ALRA
Sbjct: 175 KPQEASRMISKIARPD---ADCETLIRDALRA 203


>gi|288923988|ref|ZP_06418058.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f]
 gi|288344666|gb|EFC79125.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f]
          Length = 217

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 1/177 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +E L     ++DV GV  +++C   TL+ L ++G+   L     +R+ ++ L
Sbjct: 1   MIASISGTVEALSPTSAVVDVGGVGILVWCTPATLARL-RVGERAKLSTTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F +LQ   GVG R+A  VL   +   +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFADADERDVFEILQGAAGVGPRLAQAVLGVHSPDAVRRAVAAEDLAALTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ +L+ K    S+ V      V             A     ALV LGY   +A
Sbjct: 120 AQRIVLDLRDKIGPPSAPVPAPRGAVAAAAVAELRPGGPAEQVRDALVGLGYSAREA 176


>gi|254468402|ref|ZP_05081808.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13]
 gi|207087212|gb|EDZ64495.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13]
          Length = 189

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MIG I+G +      +V +D  G+ Y I  P+ T   L ++     +F+  HM  R+D  
Sbjct: 1   MIGSIRGILIDRSPPWVQVDCGGIGYEIEVPMSTYYHLPELQ--SDIFLHVHMVVREDAQ 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGFL+  ++  F  L  + G+GA+VA+ +LS ++  +   +I  Q+  ++ +IPGI  
Sbjct: 59  LLFGFLTKEEKSSFKSLIKINGIGAKVALSILSGVSMDQFSNAIEQQDVSLLVKIPGIGR 118

Query: 119 KIASRIMTELKGK 131
           K A R++ ELK K
Sbjct: 119 KTAERLIVELKDK 131


>gi|239637553|ref|ZP_04678525.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603]
 gi|239596771|gb|EEQ79296.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603]
          Length = 200

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57
           M   IKG +  L+  +V++DV GV Y I  P   R    L K +  F +L V    R+D 
Sbjct: 1   MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTPNSYRFQKYLDKEVQIFTSLIV----REDA 56

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF+++ ++  F+ L  V G+G + A+ +L+  T  E+ ++I  +N   + + PGI 
Sbjct: 57  QLLYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDTYLTKFPGIG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +I+ +LKGK           ++ +N   A+     S    A+ AL  LGY + + 
Sbjct: 117 KKTARQIVLDLKGKVQITEENSDTLLNVMNDSNAN----ESMIKEAMLALEALGYSK-RE 171

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
            + V  VL K+ N+    + +++ L+ +
Sbjct: 172 LSKVEKVL-KQSNMDSVDEAVKIGLQTL 198


>gi|284032305|ref|YP_003382236.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836]
 gi|283811598|gb|ADB33437.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836]
          Length = 199

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 27/215 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D  +I+V GV   ++C   TL+ L + G    +     +R+D + L
Sbjct: 1   MIAFVRGPVAAIGVDSAVIEVGGVGMQVFCHPGTLAGL-RPGQEARVATSMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D ++  F LL +  GVG ++A   L+ ++  +L +++  ++  ++ ++PGI  K 
Sbjct: 60  YGFADDDEKSLFELLLTASGVGPKLAQAALAVLSPDQLRQAVASEDLAMLVKVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-----SALVNLGYGQD 175
           A R++ ELK K              +      +   P  A  A      + LV LG+   
Sbjct: 120 AQRVVLELKDK--------------IGAPSKMVAGRPLQATEAWKDQVQAGLVGLGWSAR 165

Query: 176 QATTAVVSV----LKKEKNIADDSQIIRLALRAIS 206
            A  AVV+V     + E ++ D   ++R ALR +S
Sbjct: 166 DAEDAVVAVSPLAAEGEPSVPD---LLRAALRVLS 197


>gi|260903852|ref|ZP_05912174.1| Holliday junction DNA helicase, RuvA subunit [Brevibacterium linens
           BL2]
          Length = 206

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 11/203 (5%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           + G +  +  D+++I   GV   +     TLS   + G    L     +R+D + LFGF 
Sbjct: 13  LSGTVHRIAADHLVILTYGVGRRVNVTPDTLSNT-RHGADIELVTTLVVREDSMTLFGFG 71

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++ +   F +L S+ G+G R+AM +LS +   EL  +I  Q++  + ++PGI  K ASRI
Sbjct: 72  TEDENHTFEVLLSISGIGPRLAMAILSVMGPGELAAAISNQDANALTRVPGIGKKGASRI 131

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + EL+ K   LS+           E     S        + ALV LG+ + QA   V  V
Sbjct: 132 ILELENKLPKLSA----------SEPGPQLSFGGANQQVVDALVGLGWKEAQAADVVQEV 181

Query: 185 LKKEKNIADDSQIIRLALRAISC 207
           +      A  S +++ +L+ +  
Sbjct: 182 VNDLGQNAGTSALLKASLKVLGA 204


>gi|217964320|ref|YP_002349998.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23]
 gi|290893935|ref|ZP_06556911.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-071]
 gi|254766966|sp|B8DHL5|RUVA_LISMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|217333590|gb|ACK39384.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23]
 gi|290556473|gb|EFD90011.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-071]
 gi|307571114|emb|CAR84293.1| holliday junction DNA helicase [Listeria monocytogenes L99]
 gi|313608655|gb|EFR84502.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           F2-208]
          Length = 201

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRE-LKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  L KE+++  D+  I+LAL+ ++
Sbjct: 176 VIPKLAKEEDLTSDA-YIKLALQLMT 200


>gi|226698801|sp|A4G1U8|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193222212|emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans]
          Length = 192

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 24/210 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +  P+ T   L  +G+   L     +R+D   L
Sbjct: 1   MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGEKVALLTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + G+GAR A+ +LS ++  +L  +I LQ +  + +IPGI  K 
Sbjct: 61  FGFGTAEERNVFKQLVKITGIGARTALSILSGMSVADLSNAITLQEAGRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ELKGK      +   V+  D +                 + ++AL+ LGY   +
Sbjct: 121 AERLLLELKGKLGADLGAAGGVIHSDATS----------------DILNALLALGYSDKE 164

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           A  A+  V      ++D    I+LAL+A+S
Sbjct: 165 ALLAMKQV-PAGTGVSDG---IKLALKALS 190


>gi|15609730|ref|NP_217109.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           H37Rv]
 gi|15842133|ref|NP_337170.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CDC1551]
 gi|31793777|ref|NP_856270.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis AF2122/97]
 gi|121638478|ref|YP_978702.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662432|ref|YP_001283955.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           H37Ra]
 gi|148823788|ref|YP_001288542.1| Holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis F11]
 gi|167967067|ref|ZP_02549344.1| Holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404543|ref|ZP_03416724.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           02_1987]
 gi|215412369|ref|ZP_03421129.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           94_M4241A]
 gi|215431548|ref|ZP_03429467.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           EAS054]
 gi|215446844|ref|ZP_03433596.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T85]
 gi|218754331|ref|ZP_03533127.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis GM
           1503]
 gi|219558597|ref|ZP_03537673.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T17]
 gi|224990972|ref|YP_002645659.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798325|ref|YP_003031326.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           1435]
 gi|254232711|ref|ZP_04926038.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C]
 gi|254365262|ref|ZP_04981307.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551644|ref|ZP_05142091.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187606|ref|ZP_05765080.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201721|ref|ZP_05769212.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T46]
 gi|260205915|ref|ZP_05773406.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           K85]
 gi|289444132|ref|ZP_06433876.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T46]
 gi|289448243|ref|ZP_06437987.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289553618|ref|ZP_06442828.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           605]
 gi|289570764|ref|ZP_06450991.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T17]
 gi|289575303|ref|ZP_06455530.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           K85]
 gi|289746386|ref|ZP_06505764.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           02_1987]
 gi|289754712|ref|ZP_06514090.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis EAS054]
 gi|289758724|ref|ZP_06518102.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis T85]
 gi|289762766|ref|ZP_06522144.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM
           1503]
 gi|294994298|ref|ZP_06799989.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           210]
 gi|297635203|ref|ZP_06952983.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732196|ref|ZP_06961314.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN
           R506]
 gi|298526068|ref|ZP_07013477.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776867|ref|ZP_07415204.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu001]
 gi|306780631|ref|ZP_07418968.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu002]
 gi|306785395|ref|ZP_07423717.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu003]
 gi|306789995|ref|ZP_07428317.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu004]
 gi|306794076|ref|ZP_07432378.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu005]
 gi|306798490|ref|ZP_07436792.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu006]
 gi|306804353|ref|ZP_07441021.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu008]
 gi|306807607|ref|ZP_07444275.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu007]
 gi|306969809|ref|ZP_07482470.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu009]
 gi|306972982|ref|ZP_07485643.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu010]
 gi|307080692|ref|ZP_07489862.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu011]
 gi|307085281|ref|ZP_07494394.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu012]
 gi|313659531|ref|ZP_07816411.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039572|sp|P66745|RUVA_MYCBO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042201|sp|P66744|RUVA_MYCTU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230567|sp|A1KLU1|RUVA_MYCBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230571|sp|A5U5U3|RUVA_MYCTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767377|sp|C1AF62|RUVA_MYCBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114794219|pdb|2H5X|A Chain A, Ruva From Mycobacterium Tuberculosis
 gi|114794220|pdb|2H5X|B Chain B, Ruva From Mycobacterium Tuberculosis
 gi|114794221|pdb|2H5X|C Chain C, Ruva From Mycobacterium Tuberculosis
 gi|114794222|pdb|2H5X|D Chain D, Ruva From Mycobacterium Tuberculosis
 gi|1478219|emb|CAB01282.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium
           tuberculosis H37Rv]
 gi|13882417|gb|AAK46984.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CDC1551]
 gi|31619371|emb|CAD94809.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium bovis
           AF2122/97]
 gi|121494126|emb|CAL72604.1| Probable holliday junction DNA helicase ruvA [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124601770|gb|EAY60780.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C]
 gi|134150775|gb|EBA42820.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506584|gb|ABQ74393.1| Holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148722315|gb|ABR06940.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           F11]
 gi|224774085|dbj|BAH26891.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319828|gb|ACT24431.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           1435]
 gi|289417051|gb|EFD14291.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T46]
 gi|289421201|gb|EFD18402.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289438250|gb|EFD20743.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           605]
 gi|289539734|gb|EFD44312.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           K85]
 gi|289544518|gb|EFD48166.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T17]
 gi|289686914|gb|EFD54402.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           02_1987]
 gi|289695299|gb|EFD62728.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis EAS054]
 gi|289710272|gb|EFD74288.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM
           1503]
 gi|289714288|gb|EFD78300.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis T85]
 gi|298495862|gb|EFI31156.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214722|gb|EFO74121.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu001]
 gi|308326462|gb|EFP15313.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu002]
 gi|308329914|gb|EFP18765.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu003]
 gi|308333529|gb|EFP22380.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu004]
 gi|308337556|gb|EFP26407.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu005]
 gi|308341223|gb|EFP30074.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu006]
 gi|308346003|gb|EFP34854.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu007]
 gi|308349030|gb|EFP37881.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu008]
 gi|308352726|gb|EFP41577.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu009]
 gi|308357598|gb|EFP46449.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu010]
 gi|308361540|gb|EFP50391.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu011]
 gi|308365151|gb|EFP54002.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu012]
 gi|323718789|gb|EGB27946.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904206|gb|EGE51139.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           W-148]
 gi|328458095|gb|AEB03518.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           4207]
          Length = 196

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L + +   N   + ++PGI  + 
Sbjct: 60  YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K      V             H    P      + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDK------VGVAATGGALSTNGHAVRSP-----VVEALVGLGFAAKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
             +VL    + A  S  +R AL
Sbjct: 169 TDTVLAANHD-ATTSSALRSAL 189


>gi|229491976|ref|ZP_04385793.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis
           SK121]
 gi|229321108|gb|EEN86912.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis
           SK121]
          Length = 199

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    LF    +R+D + L
Sbjct: 1   MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     +  F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  ++++             + + +  S     + AL  LG+   QA  A
Sbjct: 120 AERMVVELRDKVDAVATTAGA--------ASGVVAGSSIRDQIVEALEGLGFPIKQAEQA 171

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
             SVL  E   A  S  +R AL
Sbjct: 172 TDSVL-AESPEATTSVALRSAL 192


>gi|225021302|ref|ZP_03710494.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946035|gb|EEG27244.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 198

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G +  +   + +I+  GV Y +   + T S LG +      F+   M  R++  
Sbjct: 1   MIVSLRGTVIDITAHHAVIECAGVGYQV---LATPSTLGHLTRGAETFILITMIVREESQ 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFL    R  F+ LQ+V G+G ++A+   S  T  EL  +I   ++K + +IPG+  
Sbjct: 58  TLYGFLDAATRDMFVTLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           ++A R++ +LK K  + ++      + V     HI +        + AL +LG+ +  A 
Sbjct: 118 RMAERMVVDLKDKVATYATPETPTPAAVP----HIDTYE----QVLEALASLGFAEKTAE 169

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             + +VL      AD +     ALRA
Sbjct: 170 PVLTTVLA-----ADPTLTTPAALRA 190


>gi|242373942|ref|ZP_04819516.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
 gi|242348296|gb|EES39898.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
          Length = 200

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 21/212 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57
           M   +KG +  L+  +V+++  G+ Y I  P   R  + L K +  + +L V    R+D 
Sbjct: 1   MYAYVKGTLSQLFPTHVVVETAGIGYEIQTPNSYRFQTYLDKEVQIYTSLIV----REDA 56

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF+S+ ++  F+ L  V G+G + A+ +L+  T  E+ ++I  +N   + Q PGI 
Sbjct: 57  QLLYGFISEEEKDMFLSLIKVTGIGPKSALAILAASTPNEVKQAIENENDAYLTQFPGIG 116

Query: 118 MKIASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            K A +I+ +LKGK      +  +++Q D++    EQ+ I         A+ AL  LGY 
Sbjct: 117 KKTARQIVLDLKGKVTINEENSDTLLQVDLNST--EQSQIVK------EAMLALEALGYS 168

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + +  + V  VL K+ +I    + ++L L+ +
Sbjct: 169 KREL-SKVEKVLNKQ-SITSVDEAVKLGLQTL 198


>gi|227833242|ref|YP_002834949.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184228|ref|ZP_06043649.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|254766955|sp|C3PGQ7|RUVA_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|227454258|gb|ACP33011.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 202

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +++  GV Y +      L  L + G+   +     +++D + L
Sbjct: 1   MIASLRGTVLDIQLDHAVLECAGVGYKVLATPAMLGTLQR-GEEARVMTTLVVKEDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  DR  F +LQ+V G+G ++A+  LS ++A +L ++I  + +  + +IPG+  ++
Sbjct: 60  YGFTSQDDRDMFHVLQTVSGLGPKLALAALSVMSAGDLAQAIAGEEAARLQKIPGVGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +          +   A   +      + + AL+ LG+    A   
Sbjct: 120 AQRLILELKDKVKAFAPA-----ESADLSSAAPAAAGPVVEDVVEALIGLGFTDKMARPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V SV+ ++ + A    ++R AL
Sbjct: 175 VESVVAEQPDAA-TPVVLRAAL 195


>gi|52081253|ref|YP_080044.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC
           14580]
 gi|52786633|ref|YP_092462.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC
           14580]
 gi|319644780|ref|ZP_07999013.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp.
           BT1B_CT2]
 gi|81384931|sp|Q65GP5|RUVA_BACLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52004464|gb|AAU24406.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52349135|gb|AAU41769.1| RuvA [Bacillus licheniformis ATCC 14580]
 gi|317392589|gb|EFV73383.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp.
           BT1B_CT2]
          Length = 201

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 107/206 (51%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P      + K     T++   ++R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPN---PFIYKKNSKETIYTYHYVREDTNAL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  + +V G+G + A+ +L+      ++E+I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKMLFTKMLNVTGIGPKGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +I+ +LKGK A ++  +     +   +EQ H  +  +    A+ AL  LGY  D+   
Sbjct: 118 ARQIILDLKGKLADAVPEIAADLFNHEEREQIHEAA--TALEEALEALRALGYS-DREIK 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V   LKKE+ ++ D Q ++ AL+ +
Sbjct: 175 KVQPHLKKEEALSTD-QYVKKALQKL 199


>gi|170077885|ref|YP_001734523.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002]
 gi|229560135|sp|B1XL12|RUVA_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169885554|gb|ACA99267.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002]
          Length = 209

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 9/152 (5%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFGF 63
           I  N++G +  +++++V+ + Y I  P R    L   IG    +FV +  R+D   L+GF
Sbjct: 12  IHRNLQGRF--FLILEVRDIGYEIQVPGRLAQELAAAIGQPQHIFVHSQQREDGTYLYGF 69

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            S   R  F  L SV G+GA+ A+ +L  +T  ELV++I+  + + +A+ PGI  K A R
Sbjct: 70  ASAAARDLFRQLISVSGIGAQGAIALLDTLTLPELVQAIVTADHRQLAKAPGIGKKTAER 129

Query: 124 IMTELKGK------AISLSSVVQQDMSCVNKE 149
           +  EL+ K        SL     Q  + V+++
Sbjct: 130 LALELRSKLSQWRDQFSLPDTAAQPNAAVHED 161


>gi|255994147|ref|ZP_05427282.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC
           49989]
 gi|255993815|gb|EEU03904.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC
           49989]
          Length = 194

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I    E  +++D   + Y I  P+ +     +I +   ++ E  +R+D + L
Sbjct: 1   MIKFLRGRIFEKLESCIVLDTGNIGYQINLPLNSPFFTAEISEEVLVYTELIVREDDMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF       +F LL ++ GVGA+ ++ +LS  T  EL  +I  +++  I++  GI  K 
Sbjct: 61  YGFEDFKTLNFFNLLMNINGVGAKASLALLSVSTVDELARAIASKDTAFISRANGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD---MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI  EL  K  S++  +  +    S V+  +A  C           AL++LGY +++A
Sbjct: 121 AERIALELSDKVESIAYNLPSNNEVTSVVSGNKAEAC----------EALMSLGYNKNEA 170

Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202
               ++VLK      D    IR AL
Sbjct: 171 ----MNVLKSLDEGLDTQSYIRKAL 191


>gi|229597664|pdb|2ZTC|A Chain A, Mtruva Form Ii
 gi|229597665|pdb|2ZTC|B Chain B, Mtruva Form Ii
 gi|229597666|pdb|2ZTC|C Chain C, Mtruva Form Ii
 gi|229597667|pdb|2ZTC|D Chain D, Mtruva Form Ii
 gi|229597668|pdb|2ZTD|A Chain A, Mtruva Form Iii
 gi|229597669|pdb|2ZTD|B Chain B, Mtruva Form Iii
 gi|229597670|pdb|2ZTE|A Chain A, Mtruva Form Iv
          Length = 212

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 17  MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 75

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L + +   N   + ++PGI  + 
Sbjct: 76  YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 135

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K + +++              H    P      + ALV LG+   QA  A
Sbjct: 136 AERMVLELRDK-VGVAAT-----GGALSTNGHAVRSP-----VVEALVGLGFAAKQAEEA 184

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
             +VL    + A  S  +R AL
Sbjct: 185 TDTVLAANHD-ATTSSALRSAL 205


>gi|323186363|gb|EFZ71713.1| holliday junction DNA helicase RuvA [Escherichia coli 1357]
          Length = 187

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 3/188 (1%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           +LI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L 
Sbjct: 1   MLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 60

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
              GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L 
Sbjct: 61  KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 120

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
             +    + +        +       A++ALV LGY   +A+  V  + + +   A    
Sbjct: 121 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSET 177

Query: 197 IIRLALRA 204
           +IR ALRA
Sbjct: 178 LIREALRA 185


>gi|295103887|emb|CBL01431.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium
           prausnitzii SL3/3]
          Length = 203

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 10/194 (5%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           + V++   GV Y   CP      L  +G   TL+    + ++ + L+GF ++  +  F +
Sbjct: 15  NAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSLYGFATEEQQACFEM 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L +V GVG +V + +LS +    +  +I   + K      G+  K+A RI+ ELK K   
Sbjct: 75  LTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKLAQRIVLELKDKVAK 134

Query: 135 --LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
             +  +  +D++    +     S    +  AI+ALV+LGY Q +A  A+  +        
Sbjct: 135 GFVDGISLEDVAGTAADTPATQS----SAQAIAALVSLGYSQSEAALAIAKI----DATL 186

Query: 193 DDSQIIRLALRAIS 206
              +II+LALR+++
Sbjct: 187 PVEEIIKLALRSMA 200


>gi|290769835|gb|ADD61608.1| putative protein [uncultured organism]
 gi|291542961|emb|CBL16071.1| Holliday junction DNA helicase, RuvA subunit [Ruminococcus bromii
           L2-63]
          Length = 200

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 4/172 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +  +  +  +++  GV Y+    + TL  + K+    TL+   ++R+D + L
Sbjct: 1   MLYSVRGKLIAIESNAAVVECGGVGYMCQTTMNTLKAV-KLNTEVTLYTYLNVREDAVDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F  L SV GVG +  + VLS ++  ++  +I   + K I +  GI  KI
Sbjct: 60  FGFATKAELETFKNLISVSGVGPKAGLAVLSELSPEQVAMAIASDDLKTITRAQGIGKKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A RI+ ELK K   L+   ++D S     Q  +         AI AL  LGY
Sbjct: 120 AQRIVLELKDK---LAKAAKEDSSFAQAAQNSVNVSTGNVPKAIEALGVLGY 168


>gi|160942948|ref|ZP_02090187.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445849|gb|EDP22852.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii
           M21/2]
          Length = 203

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           + V++   GV Y   CP      L  +G   TL+    + ++ + L+GF ++  +  F +
Sbjct: 15  NAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSLYGFATEEQQACFEM 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L +V GVG +V + +LS +    +  +I   + K      G+  K+A RI+ ELK K ++
Sbjct: 75  LTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKLAQRIVLELKDK-VA 133

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV---LKKEKNI 191
              V    +  V    A   +  S A  AI+ALV+LGY Q +A  A+  +   L  E   
Sbjct: 134 KGFVDGISLEDVAGSAADTPATQSSA-QAIAALVSLGYSQSEAALAIAKIDAALPVE--- 189

Query: 192 ADDSQIIRLALRAIS 206
               +II+LALR+++
Sbjct: 190 ----EIIKLALRSMA 200


>gi|326773260|ref|ZP_08232543.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505]
 gi|326636490|gb|EGE37393.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505]
          Length = 217

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L ++G+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---VNKEQAHICSM----PSFAINAISALVNLGYG 173
           A R++ ++  K   L  V   D+     V +    + +M    P    + ++ALV LG+ 
Sbjct: 120 AQRVILDVADK---LGPVTGDDLGAAQTVAQSAQGVEAMSDGGPEPHADVVAALVQLGWN 176

Query: 174 QDQATTAVVSVLKKEKNIA---DDSQIIRLALR 203
           +  A  AV SV     +     D + ++R +LR
Sbjct: 177 EASAQQAVSSVTADAADGGQEPDMAAVLRASLR 209


>gi|258545752|ref|ZP_05705986.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC
           15826]
 gi|258518997|gb|EEV87856.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC
           15826]
          Length = 197

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       ++++  GV Y +  P+  L  + + G    LFV   +R D   L
Sbjct: 1   MIAYLRGTVLVKQAGQIILETGGVGYELAVPLSVLERVHE-GQEAALFVHHAVRDDGHYL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R WF  L  V G+G ++A+ +LS      L +++  Q+S  + ++PG+  K 
Sbjct: 60  YGFHTLEQRSWFRELIRVSGIGPKIALLILSGFDVEMLAQTVRAQDSAALVKLPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  +   L        +     Q  I    S  ++A  ALV LGY   +A   
Sbjct: 120 AERLLVELNDRVGRLP-------TAGGAGQGSILRPASARLDAEEALVALGYKPAEAAQL 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V   +   AD   +IR AL+
Sbjct: 173 IERVGDDD---ADTDTLIRRALQ 192


>gi|326329831|ref|ZP_08196151.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium
           Broad-1]
 gi|325952417|gb|EGD44437.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium
           Broad-1]
          Length = 200

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 23/203 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +++V G+   + C   TL+ L + G+   L     +R+D + L
Sbjct: 1   MIASVRGKVAAVSLSTAVVEVGGIGIELLCTPNTLATL-RTGEEAHLPTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F LLQ+  GVG ++A  +L+ ++   +  +I  +++K + ++PGI  K 
Sbjct: 60  FGFTDTDERTLFELLQTASGVGPKLAQAMLAVLSPDGIRLAISTEDAKTLTKVPGIGQKG 119

Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ ELK +      + S  + VQQ  +    +                AL+ LGY  
Sbjct: 120 AQRVILELKDRIGAPTGSASAPAAVQQGAAPWRDQ-------------VTEALIGLGYNA 166

Query: 175 DQATTAVVSVLKKEKNIADDSQI 197
             A  AV ++   E    D + I
Sbjct: 167 RDADKAVTAI---EPEAGDHANI 186


>gi|320011892|gb|ADW06742.1| Holliday junction DNA helicase RuvA [Streptomyces flavogriseus ATCC
           33331]
          Length = 208

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TL+ L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPGTLAGL-RIGTDARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRTAVATGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +   L   V    + + ++        S+     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDR---LGDPVG---ARIGQQGVGTPVSSSWRDQLQAALIGLGYATREADEA 173

Query: 181 VVSVLKK-EKNIADD-----SQIIRLALRAIS 206
           V +V  + E  IA        Q++R AL+ ++
Sbjct: 174 VTAVTPQAEAAIAGGGQAPVPQLLRAALQTLN 205


>gi|115380771|ref|ZP_01467652.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823011|ref|YP_003955369.1| holliday junction ATP-dependent DNA helicase ruva [Stigmatella
           aurantiaca DW4/3-1]
 gi|115362222|gb|EAU61576.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396083|gb|ADO73542.1| Holliday junction ATP-dependent DNA helicase RuvA [Stigmatella
           aurantiaca DW4/3-1]
          Length = 203

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 6/180 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +IDV GV Y +     TL  L   G    + V T +R+D   L
Sbjct: 1   MIAALRGTVAEKDLEEAIIDVAGVGYRVAFSTLTLGKLPAEGQPVHVRVRTVVREDAFEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  + + F+LL SV  VG R+A+ VLS +   EL  ++       + +I G+  K 
Sbjct: 61  FGFLSKAEEEMFLLLTSVSHVGPRLALMVLSGMEVAELAVALGKGEIARLTKIHGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K      V +  +  V K  + +        + +SAL+NLGY   QA  A
Sbjct: 121 AERLVLELREK------VKELHLEAVAKGASSVSVPAGPKADLVSALLNLGYKAPQAEKA 174


>gi|309805314|ref|ZP_07699365.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           09V1-c]
 gi|308165390|gb|EFO67622.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           09V1-c]
          Length = 167

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 3/131 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P        K   +C +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIINPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGK 131
           AS+I+ +LKGK
Sbjct: 118 ASQIILDLKGK 128


>gi|327450649|gb|EGE97303.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL087PA3]
          Length = 194

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 18/197 (9%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   DR  F L+
Sbjct: 9   WVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADDRDAFELV 67

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
           Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K A++++ ELK K  +L
Sbjct: 68  QTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILELKDKVAAL 127

Query: 136 SSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQATTAV--VSVLKKEK 189
           +              A +   P     +       LV LG+    A  AV  V+ LK+  
Sbjct: 128 T-----------PRGASVSGAPHVVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALKEAD 176

Query: 190 NIADDSQIIRLALRAIS 206
                  ++R ALR+++
Sbjct: 177 PAMTIGNLMRAALRSLA 193


>gi|227544210|ref|ZP_03974259.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri CF48-3A]
 gi|300908206|ref|ZP_07125672.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri SD2112]
 gi|133930481|gb|ABO43812.1| RuvA [Lactobacillus reuteri]
 gi|227185803|gb|EEI65874.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri CF48-3A]
 gi|300894633|gb|EFK87989.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri SD2112]
          Length = 199

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 23/199 (11%)

Query: 16  YVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y+++DV GV Y  ++  P R      K      ++V   +R+D I LFGF    +++ FM
Sbjct: 16  YIVVDVNGVGYKLLVANPYRYQEDRTKK---VQVYVYQAVREDNISLFGFTDQNEKKLFM 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-- 131
            L +V G+G + A+ +L+      LV++I   N   + + PGI  K AS+I+ +L+ K  
Sbjct: 73  QLINVSGIGPKSALAILANPDHQGLVDAITNNNVNYLTKFPGIGKKTASQIVLDLRDKLT 132

Query: 132 ---AISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
              + SL +  Q  + + VN+E            +A+ AL  LGY +++    V   L K
Sbjct: 133 NESSSSLFATTQLTVDATVNRELK----------DALEALAALGY-KERDIKKVQKTLMK 181

Query: 188 EKNIADDSQIIRLALRAIS 206
           E+ +A D + +R ALR ++
Sbjct: 182 EEQMATD-EYLRQALRLLN 199


>gi|238762969|ref|ZP_04623936.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           kristensenii ATCC 33638]
 gi|238698727|gb|EEP91477.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           kristensenii ATCC 33638]
          Length = 189

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           +L++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R  F  L 
Sbjct: 1   MLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELI 60

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K +   L+
Sbjct: 61  KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 120

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
             +  +   +    +    +    I   A SALV LGY   +A+  V  + K     AD 
Sbjct: 121 GDLFNNTGDIQLPASSSSQISDADIEAEAASALVALGYKPQEASRLVSKIAKPG---ADC 177

Query: 195 SQIIRLALRA 204
             +IR ALRA
Sbjct: 178 ETLIRDALRA 187


>gi|15806292|ref|NP_294998.1| Holliday junction DNA helicase RuvA [Deinococcus radiodurans R1]
 gi|20455276|sp|Q9RUV7|RUVA_DEIRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|6459015|gb|AAF10840.1|AE001974_5 Holliday junction binding protein [Deinococcus radiodurans R1]
          Length = 201

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQI 58
           MI  + G +  + E   ++   GV Y + CP   L+ L  G+  +F T F+   +R+D  
Sbjct: 1   MIAYLSGVVREVREGSAVVVAGGVGYEVQCPAGMLARLKPGEAAEFSTRFI---VREDAQ 57

Query: 59  RLFGFLSDLDR-QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            LFGF  D D  + F LL SV GVG ++ + +LS +  + L   +I  + K+++ + G+ 
Sbjct: 58  LLFGF-PDADHLKLFDLLTSVSGVGPKLGLALLSAMPVSALAAGLIGGDVKLLSSVSGVG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A R+  EL  K +          +   K  A + S      +A+ AL+ LG+ + Q 
Sbjct: 117 KKTAERLALELSSK-VPEHLAAAASGAAGGKRPARVSSTAGH--DAVDALLALGFREAQV 173

Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202
             AV  +L  +   + D+ +IR AL
Sbjct: 174 RAAVAELLGADPEASADT-LIRKAL 197


>gi|309807405|ref|ZP_07701368.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           01V1-a]
 gi|312872854|ref|ZP_07732916.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873710|ref|ZP_07733755.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2052A-d]
 gi|325913741|ref|ZP_08176102.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B]
 gi|308169327|gb|EFO71382.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           01V1-a]
 gi|311090708|gb|EFQ49107.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091588|gb|EFQ49970.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2062A-h1]
 gi|325476941|gb|EGC80092.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B]
          Length = 194

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 22/181 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P        K   +C +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIINPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           AS+I+ +LKGK        L  ++ QD   +               +AI AL  LGY   
Sbjct: 118 ASQIILDLKGKLDVSDQPQLELILDQDNPALK--------------DAILALSALGYSNK 163

Query: 176 Q 176
           +
Sbjct: 164 E 164


>gi|212696229|ref|ZP_03304357.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676858|gb|EEB36465.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 197

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ + E+  +I+   + Y+I     T+  L +I +   +F + ++R+D I L
Sbjct: 1   MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F LL SV  +G + A+ VLS +   ++  +I+  +   + +  GI  K 
Sbjct: 60  FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKFAIVNNDIDTLTKAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++  +  D+S    E +   S     + A  AL+NLGY Q  +   
Sbjct: 120 ASRIILELVDKVKKMA--INDDISI--SEDSFTTSNKEIDV-AREALINLGY-QRNSIDK 173

Query: 181 VVSVLK 186
           V++ LK
Sbjct: 174 VLTTLK 179


>gi|282880373|ref|ZP_06289084.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS
           5C-B1]
 gi|281305729|gb|EFA97778.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS
           5C-B1]
          Length = 204

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55
           MI  I+G +  L     +++  G+ Y +   + T S + GK      L+V     T  R 
Sbjct: 1   MIEYIRGELTDLTPAQAVLEAAGIGYSLNISLNTYSAIQGK--KEVKLYVHESLVTGGRD 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D    +GF S  +R  + +L +V GVGA  A  +LS I+  EL   I   + +++  + G
Sbjct: 59  DNFTFYGFYSKQERDLYRMLITVSGVGANTARMILSAISPAELCNVIANGDERMLKSVKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I +K A RI+ +LK K +  SS +  ++   ++ Q  + S       A+SAL  LG+   
Sbjct: 119 IGLKTAQRIIVDLKDKIV--SSGIATELHVSDQPQNMVHS--GIRDEAVSALTMLGFSPA 174

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +   V S+LK+  ++  + Q+++LAL  I
Sbjct: 175 PSAKVVESILKESDSMPVE-QVVKLALSRI 203


>gi|6685946|sp|Q9WY12|RUVA_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 188

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++ + GV + I C ++T   + K G  C L     + QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK +     S   +DM   ++              ++ ALV+LGY + QA  
Sbjct: 120 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALVSLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKQVYREGMKT---SELIKEALKFLS 186


>gi|194468325|ref|ZP_03074311.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23]
 gi|194453178|gb|EDX42076.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23]
          Length = 199

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 13/194 (6%)

Query: 16  YVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y+++DV GV Y  ++  P R      K      ++V   +R+D I LFGF    ++  FM
Sbjct: 16  YIVVDVNGVGYKLLVANPYRYQEDRTKK---VRVYVYQAVREDNISLFGFTDQNEKNLFM 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L +V G+G + A+ +L+      LV++I   N   + + PGI  K AS+I+ +L+ K  
Sbjct: 73  QLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKTASQIVLDLRDKLT 132

Query: 134 SLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
           + SS      S     Q  +  ++ S   +A+ AL  LGY +++    V   L KE+ +A
Sbjct: 133 NESS-----SSLFATTQLAVDTTVNSELKDALEALAALGY-KERDIKKVQKTLMKEEQMA 186

Query: 193 DDSQIIRLALRAIS 206
            D + +R ALR ++
Sbjct: 187 TD-EYLRQALRLLN 199


>gi|15642939|ref|NP_227980.1| Holliday junction DNA helicase RuvA [Thermotoga maritima MSB8]
 gi|4980659|gb|AAD35258.1|AE001701_11 Holliday junction DNA helicase [Thermotoga maritima MSB8]
          Length = 191

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++ + GV + I C ++T   + K G  C L     + QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK +     S   +DM   ++              ++ ALV+LGY + QA  
Sbjct: 123 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALVSLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKQVYREGMKT---SELIKEALKFLS 189


>gi|284991600|ref|YP_003410154.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM
           43160]
 gi|284064845|gb|ADB75783.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM
           43160]
          Length = 212

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 2/181 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  +++V GV   + C   T++ L ++G+   L     +R+D + L
Sbjct: 1   MIASVNGRVAAVSPDGAVVEVGGVGLAVQCTPGTIARL-QVGESARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  VL+     E+  ++ + + K + Q+PGI  K 
Sbjct: 60  YGFADDDERQLFELLQTANGVGPRLAQAVLAIHPPREVRRAVSMADVKALMQVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +    S+  Q D +      A +  +  +     SALV LG+   +A  A
Sbjct: 120 AERLILELRDRLGVTSTDTQLDGAAPAGLPA-VTPVAPWRDQLASALVGLGWTGKEADAA 178

Query: 181 V 181
           +
Sbjct: 179 I 179


>gi|325846722|ref|ZP_08169637.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481480|gb|EGC84521.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 197

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ + E+  +I+   + Y+I     T+  L +I +   +F + ++R+D I L
Sbjct: 1   MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F LL SV  +G + A+ VLS +   ++  +I+  +   + +  GI  K 
Sbjct: 60  FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++  +  D+S    E +   S     + A  AL+NLGY Q  +   
Sbjct: 120 ASRIILELVDKVKKMA--INDDISI--SEDSFTTSNKEIDV-AREALINLGY-QRNSIDK 173

Query: 181 VVSVLK 186
           V++ LK
Sbjct: 174 VLTTLK 179


>gi|330936721|gb|EGH40906.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 119

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 68/119 (57%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKK 119


>gi|320534404|ref|ZP_08034887.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133379|gb|EFW25844.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 217

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 11/191 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L ++G+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-------VNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++ ++  K   L  V   D+            ++    S P    + ++ALV LG+ 
Sbjct: 120 AQRVILDVADK---LGPVTGDDLGAARAASGTAGGQEGAADSGPEPHADVVAALVQLGWN 176

Query: 174 QDQATTAVVSV 184
           +  A  AV SV
Sbjct: 177 EASACQAVSSV 187


>gi|332799127|ref|YP_004460626.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Tepidanaerobacter sp. Re1]
 gi|332696862|gb|AEE91319.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Tepidanaerobacter sp. Re1]
          Length = 193

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 30/214 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQG------VCYIIYCPIRTLSCLGKIGDFCTLFVETHMR 54
           M+  ++G +  +  D+ +ID+ G      +    Y  I+T     ++G+   L+ +  +R
Sbjct: 1   MLDYLEGVLVHVEPDFAIIDIGGWGLKLNISMFTYNKIKT-----ELGNKLKLYTQMVLR 55

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
            D + LFGF   ++RQ ++LL  V G+G + A+ +LS +    L  SI+ ++ K + ++P
Sbjct: 56  DDAVELFGFFDVVERQAYVLLNKVSGIGPKAAISILSLMDVARLKTSILSEDVKDLVKVP 115

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI  K A +I+ ELK +         +D+   + E      M +  I A  AL++LG+  
Sbjct: 116 GIGKKTAQKIIIELKDRI--------KDLPVTSDE-----GMYNSIIEAREALISLGFN- 161

Query: 175 DQATTAVVSVLKKEKNIADDS--QIIRLALRAIS 206
                 +  VL ++    +DS   II+ AL+ +S
Sbjct: 162 ---PMEIQLVLDEDSVKNNDSVEDIIKCALKKLS 192


>gi|328957015|ref|YP_004374401.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium
           sp. 17-4]
 gi|328673339|gb|AEB29385.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium
           sp. 17-4]
          Length = 210

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG +  +   Y++++  G+ Y ++   P R  S   K+ +  T++V   +R+D I
Sbjct: 7   MYEYIKGIVTFVSPAYIVLETNGIGYQLFIANPFRFSS---KLNEEITIYVHQAVREDAI 63

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF    ++Q ++ L SV G+G +  + +L+      LV++I  +++  + + PG+  
Sbjct: 64  TLYGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDNHQGLVQAIENEDAAYLTKFPGVGK 123

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K AS+I+ +LKGK   L+    ++ +   +E   + +  +    A+ AL  LGY   +  
Sbjct: 124 KTASQIVLDLKGKLADLTVAPLENAADYQQELV-LSTNYNHVTEAMEALEALGYSAKEIK 182

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
                + K  K   D    +R ALR
Sbjct: 183 KIEPQIRKLNKESTD--AYLREALR 205


>gi|289706228|ref|ZP_06502591.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58]
 gi|289557067|gb|EFD50395.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58]
          Length = 214

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHM--RQD 56
           MI  + G +E +  D  +I V G+        +TL+ L  G+ G      V+TH+  ++D
Sbjct: 1   MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLATLHEGRPG-----AVQTHLVVKED 55

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + L+GF    +R+ F +L +  GVG R+A+ +LS      +  ++  ++ K + ++PGI
Sbjct: 56  ALTLYGFADRDEREVFEVLITANGVGPRLALAILSVHHPEAVRRAVTEEDEKTLTRVPGI 115

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K+A +I+ EL G+       V +  + V+ E A + ++  +  + + A+  LG+ + +
Sbjct: 116 GPKMARKIIVELSGRLAPTGEPVPEAEAEVSDEPA-VETV--WHADVVQAMAGLGWSEKE 172

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A  AV + +     + D+ + +   LRA
Sbjct: 173 ALKAVEATVAARPEL-DEGRDVAALLRA 199


>gi|259501311|ref|ZP_05744213.1| crossover junction endoribonuclease subunit A [Lactobacillus iners
           DSM 13335]
 gi|302190965|ref|ZP_07267219.1| Holliday junction DNA helicase RuvA [Lactobacillus iners AB-1]
 gi|309803578|ref|ZP_07697670.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           11V1-d]
 gi|309806006|ref|ZP_07700032.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           03V1-b]
 gi|309809677|ref|ZP_07703533.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           2503V10-D]
 gi|315653062|ref|ZP_07905990.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           iners ATCC 55195]
 gi|325911914|ref|ZP_08174317.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII
           143-D]
 gi|329919608|ref|ZP_08276597.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           1401G]
 gi|259167281|gb|EEW51776.1| crossover junction endoribonuclease subunit A [Lactobacillus iners
           DSM 13335]
 gi|308164326|gb|EFO66581.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           11V1-d]
 gi|308167609|gb|EFO69762.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           03V1-b]
 gi|308170037|gb|EFO72074.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           2503V10-D]
 gi|315489597|gb|EFU79231.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           iners ATCC 55195]
 gi|325476216|gb|EGC79379.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII
           143-D]
 gi|328937413|gb|EGG33835.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           1401G]
          Length = 194

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 22/181 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P        K   +C +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           AS+I+ +LKGK        L  ++ QD   +               +AI AL  LGY   
Sbjct: 118 ASQIILDLKGKLDVSDQPQLELILDQDNPALK--------------DAILALSALGYSNK 163

Query: 176 Q 176
           +
Sbjct: 164 E 164


>gi|16803573|ref|NP_465058.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes EGD-e]
 gi|224499806|ref|ZP_03668155.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes Finland
           1988]
 gi|224501527|ref|ZP_03669834.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           R2-561]
 gi|254828233|ref|ZP_05232920.1| ruvA [Listeria monocytogenes FSL N3-165]
 gi|254829708|ref|ZP_05234363.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 10403S]
 gi|284801923|ref|YP_003413788.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578]
 gi|284995065|ref|YP_003416833.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923]
 gi|20455246|sp|Q8Y6Z7|RUVA_LISMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|16410962|emb|CAC99611.1| ruvA [Listeria monocytogenes EGD-e]
 gi|258600621|gb|EEW13946.1| ruvA [Listeria monocytogenes FSL N3-165]
 gi|284057485|gb|ADB68426.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578]
 gi|284060532|gb|ADB71471.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923]
          Length = 201

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRE-LKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  L KE ++  D+  I+LAL+ ++
Sbjct: 176 VIPKLAKEADLTSDA-YIKLALQLMT 200


>gi|312875156|ref|ZP_07735169.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2053A-b]
 gi|311089263|gb|EFQ47694.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2053A-b]
          Length = 194

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 22/181 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P        K   +C +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           AS+I+ +LKGK        L  ++ QD   +               +AI AL  LGY   
Sbjct: 118 ASQIILDLKGKLDVSDQPQLELILDQDNPALK--------------DAILALSALGYSNK 163

Query: 176 Q 176
           +
Sbjct: 164 E 164


>gi|119477229|ref|ZP_01617465.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2143]
 gi|119449592|gb|EAW30830.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2143]
          Length = 202

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 16/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+DV GV Y I  P+ T+  L ++G    L     +R+D   L
Sbjct: 1   MIGRITGVLLEKQAPELLVDVNGVGYEIQAPMTTIYQLPEVGQVVVLHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  V GVG ++A+ +LS I   E V  +   ++  + ++PG+  K 
Sbjct: 61  YGFAELQERRLFRALIKVNGVGPKLALTILSGIETDEFVRCVRDGDTLSLVRLPGVGKKT 120

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSM---PSFAINAISALVNLGYGQD 175
           A R++ E+K   K   + S+          ++  +  M    S    A SAL+ LGY   
Sbjct: 121 AERLLVEMKDRLKDWQIDSIT---------DEFRVSGMGFSNSITAEAESALIALGYKPQ 171

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
           +A  A+ +      ++    Q+IR AL+
Sbjct: 172 EAAKAIAAA--NNDSMTSSEQLIRAALK 197


>gi|332977850|gb|EGK14603.1| crossover junction ATP-dependent DNA helicase RuvA [Desmospora sp.
           8437]
          Length = 204

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 16/209 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +     + ++++  GV Y+I+C   T     + G+  T++    +R+D   L
Sbjct: 1   MIEFIRGTVAYRATEAIVVETGGVGYLIFC---THPLEWEEGEEVTVYTHQVIREDAHTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LL  V G+G +VA+ V        LV ++  ++ + + ++PG+  K 
Sbjct: 58  YGFRERQVRDLFRLLLEVSGIGPKVALAVTGSGDPGRLVNAVEQEDLRFLTKLPGVGKKT 117

Query: 121 ASRIMTELKG--KAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ +LK   K    S     D+   ++ E A   S       AI AL  LGY +++A
Sbjct: 118 AQRIVLDLKDKLKKAGFSESTFSDVPVGISGEVARAGSA-----EAIEALQALGYNEEEA 172

Query: 178 TTAVVSVLK---KEKNIADDSQIIRLALR 203
           T AV    K   +E+   D  Q IR AL+
Sbjct: 173 TRAVAMARKDFGEEEPELD--QWIRRALQ 199


>gi|154148334|ref|YP_001406161.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC
           BAA-381]
 gi|166230535|sp|A7I0X0|RUVA_CAMHC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|153804343|gb|ABS51350.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC
           BAA-381]
          Length = 184

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 27/192 (14%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           VL  V GV Y I     +L C  +I  G+   L     +R+D   L+GFL + +++ F +
Sbjct: 18  VLKTVTGVSYGISI---SLGCSARINKGEKIELLTAQILREDADLLYGFLDEKEKRMFEM 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  + G+GA  AM V S +++   + +II  ++  +  +PGI  K A RI+ EL    I 
Sbjct: 75  LIKLNGIGANTAMAVCSSLSSDNFLRAIINGDTATLTTVPGIGPKTARRIIAELSDAKIE 134

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
           L++  +Q                 + I  ISAL NLG+ +D+    +++   K  N AD 
Sbjct: 135 LANDGEQ-----------------YKIETISALENLGFKRDKINKILLNC--KSTNTAD- 174

Query: 195 SQIIRLALRAIS 206
             +I+ AL+ ++
Sbjct: 175 --LIKEALKKLA 184


>gi|308125357|ref|ZP_05774780.2| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030]
 gi|308113231|gb|EFO50771.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030]
          Length = 223

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 20  VIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 79

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 80  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 139

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +   L      D+     + A       S  S    A+SAL+ LGY   Q
Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQ 196

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K + +     Q+IR AL+++
Sbjct: 197 ASKVVSQIAKPDMS---SEQLIREALKSM 222


>gi|116872962|ref|YP_849743.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123463790|sp|A0AIY2|RUVA_LISW6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116741840|emb|CAK20964.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 201

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGKVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGSEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVFKAPENDIVHGLSPQLEEAVLALEALGYSTKE-LKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  L KE ++  D+  I+LALR ++
Sbjct: 176 VIPKLSKENDLTSDA-YIKLALRLMT 200


>gi|296129641|ref|YP_003636891.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM
           20109]
 gi|296021456|gb|ADG74692.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM
           20109]
          Length = 202

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 22/214 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQI 58
           MI  + G +  +  D  +++V GV  ++     TL+ L  G+ G   T  V   +R+D +
Sbjct: 1   MIASVHGTVLAVRLDSAVLEVGGVGLLVQATPATLAGLRVGQPGRLSTSLV---VREDAL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF  D +R  F  +Q+V GVG R+A+ +L+  T   L  ++  ++   + ++PGI  
Sbjct: 58  TLFGFADDDERDVFETVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDIAALMRVPGIGR 117

Query: 119 KIASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           K A RI+ EL  +  A   +       S  ++EQ             + ALV LG+    
Sbjct: 118 KGAQRIVLELGERLGAPDPTGGTPAAPSADHREQ------------VVEALVGLGWPLRA 165

Query: 177 ATTAVVSVLKKEK---NIADDSQIIRLALRAISC 207
           A  AV SVL          +   ++R ALR +  
Sbjct: 166 AQDAVASVLDGSAVPVGAGEVPGVLRAALRTLGS 199


>gi|15613787|ref|NP_242090.1| Holliday junction DNA helicase RuvA [Bacillus halodurans C-125]
 gi|20140284|sp|Q9KDI9|RUVA_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|10173840|dbj|BAB04943.1| holliday junction DNA helicase [Bacillus halodurans C-125]
          Length = 203

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +   Y +++V GV Y +YCP        +     T++   ++R+D IRL
Sbjct: 1   MIDYLRGTLTDIDHQYAVVEVHGVGYQVYCP-NPYEFEKERDSVITIYTFQYVREDVIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R  F  L +V G+G + A+ +L+      ++++I  ++   + + PG+  K 
Sbjct: 60  YGFRTKEKRSLFEKLLNVSGIGPKGALAILATGQPEHVIQAIEEEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ--AHICSMPSFAIN-AISALVNLGY 172
           A +I+ +LKGK   L       +    +EQ   H  +  + A++ A+ AL  LGY
Sbjct: 120 ARQIILDLKGKVDELHP----GLFSQKEEQPKPHEKNDGNQALDEAMEALKALGY 170


>gi|313764321|gb|EFS35685.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL013PA1]
 gi|313772296|gb|EFS38262.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL074PA1]
 gi|313792007|gb|EFS40108.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL110PA1]
 gi|313802043|gb|EFS43277.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL110PA2]
 gi|313807654|gb|EFS46141.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL087PA2]
 gi|313810161|gb|EFS47882.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL083PA1]
 gi|313812811|gb|EFS50525.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL025PA1]
 gi|313815859|gb|EFS53573.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL059PA1]
 gi|313818691|gb|EFS56405.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL046PA2]
 gi|313820461|gb|EFS58175.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL036PA1]
 gi|313822733|gb|EFS60447.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL036PA2]
 gi|313825333|gb|EFS63047.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL063PA1]
 gi|313827628|gb|EFS65342.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL063PA2]
 gi|313830492|gb|EFS68206.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL007PA1]
 gi|313833528|gb|EFS71242.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL056PA1]
 gi|313838864|gb|EFS76578.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL086PA1]
 gi|314915311|gb|EFS79142.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA4]
 gi|314918138|gb|EFS81969.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL050PA1]
 gi|314920215|gb|EFS84046.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL050PA3]
 gi|314925070|gb|EFS88901.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL036PA3]
 gi|314931738|gb|EFS95569.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL067PA1]
 gi|314958035|gb|EFT02138.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL002PA1]
 gi|314960393|gb|EFT04495.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL002PA2]
 gi|314962663|gb|EFT06763.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL082PA1]
 gi|314967471|gb|EFT11570.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL037PA1]
 gi|314973492|gb|EFT17588.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL053PA1]
 gi|314976172|gb|EFT20267.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL045PA1]
 gi|314978569|gb|EFT22663.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL072PA2]
 gi|314983806|gb|EFT27898.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA1]
 gi|314987987|gb|EFT32078.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA2]
 gi|314989797|gb|EFT33888.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA3]
 gi|315077879|gb|EFT49930.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL053PA2]
 gi|315080504|gb|EFT52480.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL078PA1]
 gi|315084175|gb|EFT56151.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL027PA2]
 gi|315085518|gb|EFT57494.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL002PA3]
 gi|315088425|gb|EFT60401.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL072PA1]
 gi|315096039|gb|EFT68015.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL038PA1]
 gi|315098667|gb|EFT70643.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL059PA2]
 gi|315101330|gb|EFT73306.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL046PA1]
 gi|327326319|gb|EGE68109.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL096PA2]
 gi|327330390|gb|EGE72139.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL097PA1]
 gi|327331806|gb|EGE73543.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL096PA3]
 gi|327443583|gb|EGE90237.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL013PA2]
 gi|327445787|gb|EGE92441.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL043PA2]
 gi|327448230|gb|EGE94884.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL043PA1]
 gi|327453274|gb|EGE99928.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL092PA1]
 gi|327454013|gb|EGF00668.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL083PA2]
 gi|328753271|gb|EGF66887.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL025PA2]
 gi|328753338|gb|EGF66954.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL020PA1]
 gi|328754067|gb|EGF67683.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL087PA1]
 gi|328760719|gb|EGF74285.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL099PA1]
          Length = 194

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   DR  F L+
Sbjct: 9   WVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADDRDAFELV 67

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
           Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K A++++ ELK K  +L
Sbjct: 68  QTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILELKDKVAAL 127

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV--VSVLKKEKNIAD 193
           +               H+ +   +       LV LG+    A  AV  V+ LK+      
Sbjct: 128 TP-----RGASVSGATHVVA--PWREQVAEGLVGLGWSAKDAEKAVDKVAALKEADPAMT 180

Query: 194 DSQIIRLALRAIS 206
              ++R ALR+++
Sbjct: 181 IGNLMRAALRSLA 193


>gi|89099000|ref|ZP_01171880.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL
           B-14911]
 gi|89086404|gb|EAR65525.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL
           B-14911]
          Length = 203

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 8/197 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +  +Y++++  G+ Y I  P    S   K G    +F   ++R+D   L
Sbjct: 1   MFEYIKGTVEFIGPEYIVVENNGLGYQISTP-NPFSYSNKQGGEIQIFTYHYVREDIFAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++  F  L +V G+G + A+ +L+     ++V++I  ++   + + PG+  K 
Sbjct: 60  YGFHSREEKMLFTKLLNVSGIGPKGALAILASGEPAQVVQAIEDEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177
           A +++ +LKGK   L   +     +  N + A   +  S A+   AI AL  LGY + + 
Sbjct: 120 ARQMILDLKGK---LQEAIPDFFPNLFNPDAARPAATGSAALLEEAILALRALGYSEKEV 176

Query: 178 TTAVVSVLKKEKNIADD 194
              +   L+KEK   D+
Sbjct: 177 KR-IKPALEKEKLTTDE 192


>gi|238792583|ref|ZP_04636216.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           intermedia ATCC 29909]
 gi|238728218|gb|EEQ19739.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           intermedia ATCC 29909]
          Length = 188

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 4/189 (2%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           +L++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R  F  L 
Sbjct: 1   MLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELI 60

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K +   L+
Sbjct: 61  KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 120

Query: 137 SVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
             +  +   +     +   S       A SALV LGY   +A+  V  + K     AD  
Sbjct: 121 GDLFNNTGDIQLPASSSQTSDADIEAEAASALVALGYKPQEASRLVSKIAKPG---ADCE 177

Query: 196 QIIRLALRA 204
            +IR ALR+
Sbjct: 178 TLIRDALRS 186


>gi|302389938|ref|YP_003825759.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani
           DSM 16646]
 gi|302200566|gb|ADL08136.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani
           DSM 16646]
          Length = 192

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 19/208 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           M+  I+G +  +  ++ ++DV G+ +  +  + T + +  + +    LF   H++++   
Sbjct: 1   MLDYIRGRLRDIGPNFAILDVAGLGFRCFISLNTYNKIKLLKNSKVLLFTCLHVKEEGAE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    +R+ F+LL  V GVG RVA+ +LS +    L   I+ ++ K +  +PGI  K
Sbjct: 61  LFGFSELHEREAFILLNKVSGVGPRVALSILSWLEPKRLKSVIMSEDVKTLTSVPGIGNK 120

Query: 120 IASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A +I+ ELK K  +L    V Q       EQA +C        A  AL+ LG+    + 
Sbjct: 121 TAQKIIFELKDKIKNLPVETVSQT------EQAALCE-------ARDALLALGF----SI 163

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             V  VL +        +II  ALR I+
Sbjct: 164 GEVQRVLNEIGTATTVEEIISNALRLIA 191


>gi|61657514|emb|CAI44425.1| holliday junction DNA helicase [Thermotoga sp. RQ2]
          Length = 191

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++ + GV + I C ++T   + + G+ C L     + QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK +     S   +DM   ++              ++ AL++LGY + QA  
Sbjct: 123 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALISLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKHVYREGMKT---SELIKEALKFLS 189


>gi|257456050|ref|ZP_05621253.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC
           35580]
 gi|257446508|gb|EEV21548.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC
           35580]
          Length = 202

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G + G   + V I+  G+ + I+    +    G  G    ++   + R+DQ+RL
Sbjct: 1   MFNSISGTLTGKTAESVYIETHGIEWEIFVSTLSADRFGAAGSTVRVYTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R  F+ L  V+G+G + A+ +LS + +  L  ++   +   +  IPGI  K 
Sbjct: 61  FGFLTPAERSLFLDLTKVEGIGPKQALKILSGLDSAALEAALEAGDVARLQSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG+   L     QD       +A       F  + I AL+++GY + +A   
Sbjct: 121 AQKMVLALKGQLTGL-----QDSG-----RAETAKKSEFE-DIIIALIDMGYDRKRAAET 169

Query: 181 V 181
           V
Sbjct: 170 V 170


>gi|300868186|ref|ZP_07112818.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp.
           PCC 6506]
 gi|300333810|emb|CBN58002.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp.
           PCC 6506]
          Length = 207

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 89/164 (54%), Gaps = 10/164 (6%)

Query: 1   MIGKIKGNI----EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  +KG +    +G     ++++V  + Y +    R    L  +G+   +F    +++D
Sbjct: 1   MINYLKGTVADIQKGNNRVMLILEVNQIGYEVQILPRMTGQLPAMGEVVQVFTHQQVKED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q+ L+GF+S  +R  F  L SV G+GA++A+ +L  +   +LV++I+  N++++A+ PG+
Sbjct: 61  QMVLYGFISGAERNLFRQLVSVSGIGAQLAIALLETLGLQDLVQAIVGGNTRILAKTPGV 120

Query: 117 SMKIASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHIC 154
             K A R++ EL+ K         LS+ V   +S V +E+  + 
Sbjct: 121 GNKTAERLVLELRTKLSEWRNQEGLSTSVPAGVSSVIQEEVEMT 164


>gi|170288580|ref|YP_001738818.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2]
 gi|170176083|gb|ACB09135.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2]
          Length = 188

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++ + GV + I C ++T   + + G+ C L     + QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK +     S   +DM   ++              ++ AL++LGY + QA  
Sbjct: 120 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALISLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKHVYREGMKT---SELIKEALKFLS 186


>gi|314955639|gb|EFT00041.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL027PA1]
          Length = 194

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   DR  F L+
Sbjct: 9   WVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADDRDVFELV 67

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
           Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K A++++ ELK K  +L
Sbjct: 68  QTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILELKDKVAAL 127

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV--VSVLKKEKNIAD 193
           +               H+ +   +       LV LG+    A  AV  V+ LK+      
Sbjct: 128 TP-----RGASVSGATHVVA--PWREQVAEGLVGLGWSAKDAEKAVDKVAALKEADPAMT 180

Query: 194 DSQIIRLALRAIS 206
              ++R ALR+++
Sbjct: 181 IGNLMRAALRSLA 193


>gi|312196177|ref|YP_004016238.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c]
 gi|311227513|gb|ADP80368.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c]
          Length = 205

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +++V GV  ++ C   TL+ L  +G+   L     +R+ ++ L
Sbjct: 1   MIASVAGTVLSVSPTAAVVEVGGVGLLVQCTPATLAGL-AVGEPARLATALVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  +  LQ   GVG ++A  VL  +   E+  ++  ++   + ++PG+  K 
Sbjct: 60  YGFADADERDVYETLQGAAGVGPKLAQAVLGVLAPDEVRRAVADEDLAALTRVPGVGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA---HICSMPSFAINAIS-ALVNLGYGQDQ 176
           A RI+ +LK K       +   +      QA    +   P  A   ++ AL  LGY   +
Sbjct: 120 AQRIVLDLKDK-------LGPPVGGAPARQAAGGRVLPAPRTAPEQVTDALGGLGYSTRE 172

Query: 177 ATTAVVSVLKKEKNIADD-SQIIRLAL 202
           A  AV +VL  +    DD S ++R AL
Sbjct: 173 AEDAVAAVLAGDGTDTDDVSAMLRAAL 199


>gi|146328995|ref|YP_001210061.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus
           VCS1703A]
 gi|166230547|sp|A5EXH7|RUVA_DICNV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146232465|gb|ABQ13443.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus
           VCS1703A]
          Length = 204

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 11/196 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     D +LI+V GV Y +  P   ++   ++G+  T+FV    R+D   L
Sbjct: 1   MIGWLQGRVLYKQNDQLLINVCGVGYELTVPQSVMAS-AQVGEELTVFVHHVQREDGQFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S L RQ F  L  V G+G ++++ +LS +T   L+ ++  Q S    ++ GI  K 
Sbjct: 60  YGFSSFLQRQLFRELIRVSGIGPKLSIVILSGLTPEALIAAVRAQESAPFLRLSGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMS-CVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ EL  +      V + D+  C   E +      S +  AI AL+ L     +A  
Sbjct: 120 AERLLIELHDR------VEKNDLFLCDESESSRAPIALSASEEAIQALIALELAPAEAE- 172

Query: 180 AVVSVLKKEKNIADDS 195
             + V K +K +A+D+
Sbjct: 173 --LWVKKAQKTLAEDA 186


>gi|148543762|ref|YP_001271132.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri DSM
           20016]
 gi|184153168|ref|YP_001841509.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM
           1112]
 gi|227363258|ref|ZP_03847390.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri MM2-3]
 gi|325682134|ref|ZP_08161652.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri MM4-1A]
 gi|167012661|sp|A5VIX1|RUVA_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560094|sp|B2G6E7|RUVA_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148530796|gb|ABQ82795.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus reuteri
           DSM 20016]
 gi|183224512|dbj|BAG25029.1| holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM
           1112]
 gi|227071714|gb|EEI10005.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri MM2-3]
 gi|324978778|gb|EGC15727.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri MM4-1A]
          Length = 199

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 23/199 (11%)

Query: 16  YVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y+++DV GV Y  ++  P R      K      ++V   +R+D I LFGF    ++  FM
Sbjct: 16  YIVVDVNGVGYKLLVANPYRYQEDRTKK---VQVYVYQAVREDNISLFGFTDQNEKNLFM 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-- 131
            L +V G+G + A+ +L+      LV++I   N   + + PGI  K AS+I+ +L+ K  
Sbjct: 73  QLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKTASQIVLDLRDKLT 132

Query: 132 ---AISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
              + SL +  Q  + + VN+E            +A+ AL  LGY +++    V   L K
Sbjct: 133 NESSSSLFATTQLTVDATVNRELK----------DALEALAALGY-KERDIKKVQKALMK 181

Query: 188 EKNIADDSQIIRLALRAIS 206
           E+ +A D + +R ALR ++
Sbjct: 182 EEQMATD-EYLRQALRLLN 199


>gi|197284986|ref|YP_002150858.1| Holliday junction DNA helicase RuvA [Proteus mirabilis HI4320]
 gi|227355390|ref|ZP_03839791.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
 gi|229560118|sp|B4ETP7|RUVA_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194682473|emb|CAR42407.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           HI4320]
 gi|227164614|gb|EEI49485.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
          Length = 207

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG+I+G I       VLI+   GV Y I  P+     L  IG    ++ +  +R+D   
Sbjct: 1   MIGRIRGVILEKQPPVVLIEAGNGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  ++   + ++PG+  K
Sbjct: 61  LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120

Query: 120 IASRIMTELKGKAISLSS-VVQQ--DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            A R++ E+K +   L+  + +Q  D+       +   S       A +AL+ LGY   +
Sbjct: 121 TAERLVVEMKDRFKGLNGDLFEQNGDIELPASASSKAPSAADIEAEASAALIALGYKPQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A   +  V       AD   +I+ ALRA
Sbjct: 181 AAKMISRVATAG---ADSETLIKEALRA 205


>gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198]
 gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198]
          Length = 184

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 23/204 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  +KG +  L    +L+DV  V Y I+    +   L GK  +   +++   +R+D   
Sbjct: 1   MIFALKGKVFALEPAKLLLDVHDVIYEIHISFGSAEELQGK--EEALVYISQIIREDAHL 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF++ +++Q F  L  + GVG +VA+ +LS  +A E +  I  ++   + ++PG+  K
Sbjct: 59  LFGFVTPMEKQIFDTLIKINGVGPKVALAILSTFSAQEFMAVIERKDIAALQKVPGVGTK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +IM EL G  + L  + ++D +  + +QA +            AL NLGY +     
Sbjct: 119 SAGKIMVELSGAYVEL--LPKKDHTE-HFQQAEM------------ALENLGYKRAAIQK 163

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           A+ S+  K  N+ D   II+ AL+
Sbjct: 164 ALKSI--KASNVQD---IIKEALK 182


>gi|327475176|gb|AEA77183.1| holliday junction DNA helicase [Exiguobacterium sp. EPVM]
          Length = 195

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 9/178 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG++  +  +Y+ +DV GV Y ++ P        +  +   +F   ++R+DQ  L
Sbjct: 1   MIEFVKGSVAYVCAEYITLDVSGVGYKVHVP--NPFFYREQDEHVIVFTHHYVREDQQTL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  V G+G + A+ +++      L+++I  +N K + + PG+  K 
Sbjct: 59  YGFRSRRERELFNKLLGVNGIGPKGALAIVASGDMDALIDAIETENEKYLTKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A ++  +LKGK   L+     +     +  + +         A  ALV LGY + + T
Sbjct: 119 AKQMALDLKGKLSELAPDYVPNTGLFAQGASELDE-------ACEALVALGYSEREIT 169


>gi|78779241|ref|YP_397353.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus
           marinus str. MIT 9312]
 gi|123727890|sp|Q31B28|RUVA_PROM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78712740|gb|ABB49917.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus
           marinus str. MIT 9312]
          Length = 225

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 114/214 (53%), Gaps = 32/214 (14%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVE 50
           MI  I G +  L++     ++LI+ QG+ Y I      +  ++T     K     TL+++
Sbjct: 1   MISWISGELVELWQTNQKFFLLINCQGLGYEIQVLESLFLKLKTNQITNK---NITLWIK 57

Query: 51  THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110
              ++D   LFGF S   + +F+ + +++GVG+++ MG+LS+ + +E++ +I  QN K+I
Sbjct: 58  HIKKEDSDLLFGFSSKDQKNFFIEILNIRGVGSQIGMGILSKFSISEVINAINTQNKKLI 117

Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA---- 166
             +PGI  K++ R++ ELK K  +    +Q++ S   K++ HI       IN I +    
Sbjct: 118 CSVPGIGQKMSERLILELKSKFRN-ELKIQEEKS---KDEFHI---KDNKINKIVSDIEL 170

Query: 167 -LVNLGYGQDQ-------ATTAVVSVLKKEKNIA 192
            L +L Y +++        +  + S+ KKEK+ +
Sbjct: 171 TLKSLNYTKNEIKSILPIISKEIDSLTKKEKDTS 204


>gi|330896128|gb|EGH28349.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 128

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 68/119 (57%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  +
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGQE 119


>gi|86605208|ref|YP_473971.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab]
 gi|123765632|sp|Q2JWZ2|RUVA_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|86553750|gb|ABC98708.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab]
          Length = 204

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 65/113 (57%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
           ++VQG+ Y +  P R L  L  IG+   +F    +R+ ++ L+GF S  +R  F+ L  V
Sbjct: 22  VEVQGIGYRVKAPARFLKQLPPIGEPVRVFTHLVVRETELVLYGFGSPAERDVFVELIKV 81

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
            GVG  + + +L+     ELV++++ +N ++++  PG+  K A R+  ELK K
Sbjct: 82  SGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVGHKTAQRLALELKTK 134


>gi|319651695|ref|ZP_08005822.1| Holliday junction DNA helicase motor protein [Bacillus sp.
           2_A_57_CT2]
 gi|317396762|gb|EFV77473.1| Holliday junction DNA helicase motor protein [Bacillus sp.
           2_A_57_CT2]
          Length = 203

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 5/190 (2%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           ++G ++ +  +YV+I+  G+ Y I  P    S   + G    ++   ++R+D + L+GF 
Sbjct: 5   VRGKLDFIGPEYVVIENNGIGYQILTP-NPFSYTPEFGQEVRIYTYHYVREDIMALYGFQ 63

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  ++  F  L +V G+G + A+ +L+     ++V++I  ++   + + PG+  K A ++
Sbjct: 64  TREEKTLFTKLLNVTGIGPKGALAILASGEPEQVVQAIENEDEAFLVKFPGVGKKTARQM 123

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATTAVVS 183
           + +LKGK   +      ++   +K QA   S PS  +  A+ AL  LGY  D+    +  
Sbjct: 124 ILDLKGKLPDIVPDFFPNLFSADKLQAE--SGPSGDLEEALLALKALGY-SDKELKKITP 180

Query: 184 VLKKEKNIAD 193
            L+KEK   D
Sbjct: 181 ELRKEKLTTD 190


>gi|158336024|ref|YP_001517198.1| Holliday junction DNA helicase RuvA [Acaryochloris marina
           MBIC11017]
 gi|189045739|sp|B0CAE7|RUVA_ACAM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158306265|gb|ABW27882.1| holliday junction DNA helicase RuvA [Acaryochloris marina
           MBIC11017]
          Length = 208

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 23/195 (11%)

Query: 1   MIGKIKGNIEGL-----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG ++G +  L     +   + +DV  V Y +Y P R    L    +   +F    +R+
Sbjct: 1   MIGFLQGYVVSLQQTSTHRTLLTLDVNQVGYDLYVPSRIRQHLPPDQEQMRVFTHLQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           DQ+ LFGF    +R  F  L +V G+G ++A+ ++  +   +LV++I+  N+K++ + PG
Sbjct: 61  DQMVLFGFAVVAERDLFRQLIAVSGIGPQLALALIDTLGLQDLVQAIVNSNTKMLVKTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AINAIS-----ALVN 169
           +  K A RI  EL+ K                ++QA + ++PS   I+++       L+ 
Sbjct: 121 VGAKTAERIALELRSKLAEW------------RDQAGLKTLPSAGPIDSVQEDVEMTLLA 168

Query: 170 LGYGQDQATTAVVSV 184
           LGY   +   A+ +V
Sbjct: 169 LGYTSQEVMRALQAV 183


>gi|149370922|ref|ZP_01890517.1| Holliday junction DNA helicase [unidentified eubacterium SCB49]
 gi|149355708|gb|EDM44266.1| Holliday junction DNA helicase [unidentified eubacterium SCB49]
          Length = 193

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +       V+++  GV Y I   + T S L    +   L+    +R+D   L
Sbjct: 1   MVHHVQGKMIEKNPTDVVVECNGVGYFINISLHTFSQLPSTENVL-LYTHLQVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R+ F LL SV GVGA +A  +LS +   +++++I+ ++  VI  + GI  K 
Sbjct: 60  YGFSTKVEREIFRLLISVSGVGASIARTMLSSLNPKQVMDAIVSEDVSVIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ +LK K I +   S +    S  NK +            A+SAL  LG+ +  A 
Sbjct: 120 AQRVILDLKDKIIKVFGMSAISAVSSNTNKNE------------ALSALETLGFARKVAE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
                ++++    A   +II+ AL+
Sbjct: 168 KVCDKIVQQHPE-ATVEEIIKHALK 191


>gi|108762337|ref|YP_633128.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622]
 gi|123374257|sp|Q1D2J5|RUVA_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|108466217|gb|ABF91402.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622]
          Length = 202

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNI-EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI +++G + E   ED   IDV GV Y +      L  L   G    + V T +R+D   
Sbjct: 1   MISRLRGTVLEKDLEDAT-IDVGGVGYRVNFSSLALGKLPAEGQPVDVRVRTVVREDAFD 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL+  + + F+LL SV  VG R+++ VLS +   ELV ++       +A+I G+  K
Sbjct: 60  LFGFLTKGEEEVFLLLNSVSRVGPRLSLMVLSGMEVPELVAALSRGEVARLAKIHGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K  ++       +  V++  A      + A + +SAL+NLGY Q QA  
Sbjct: 120 TAERLVLELKDKVKTIH------LEAVSRGTAPAAVSGAHA-DLVSALLNLGYKQPQAEK 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A     ++    A    + R AL+A+
Sbjct: 173 AADLASERLGAEATFQALFREALKAL 198


>gi|311069260|ref|YP_003974183.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942]
 gi|310869777|gb|ADP33252.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942]
          Length = 201

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 106/207 (51%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P      + K  +  T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPN---PFIYKERNQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+      ++E+I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILASGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A +I+ +LKGK   L+ VV + +  +   +  I    +      A+ AL  LGY + +  
Sbjct: 118 ARQIILDLKGK---LADVVPEMIENLFNHEDRIEKHKAETALDEALEALRVLGYAEKE-I 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V+  LK++  +  D Q ++ AL+ +
Sbjct: 174 KKVLPHLKEDTTLTTD-QYVKKALQKL 199


>gi|257466083|ref|ZP_05630394.1| Holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917239|ref|ZP_07913479.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691114|gb|EFS27949.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 193

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 101/193 (52%), Gaps = 21/193 (10%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +Y  ++V G+ Y +Y  +R    + ++G    +++  H+R+++ +L GFL + +R+ F L
Sbjct: 15  EYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKLIGFLEEKERKLFEL 73

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISMKIASRIMTELKGKA 132
           L SV+G+G  +A+  LS     +LV  I  Q  KV  + +IP +  K A +I+ +++ K 
Sbjct: 74  LLSVKGIGVSLALAALSTYPVEQLVAYI--QEEKVGQLKKIPKLGEKKAQQIILDIQSKL 131

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
                 V+Q +           SM ++A +  SAL NLGY    A   V  +L+ E  I 
Sbjct: 132 KHFG--VEQRL-------VEDSSM-AWAEDIASALENLGY----AKKEVEHLLQHENWI- 176

Query: 193 DDSQIIRLALRAI 205
            + Q +  A++AI
Sbjct: 177 -EYQSLEEAMKAI 188


>gi|88608038|ref|YP_506455.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str.
           Miyayama]
 gi|123763710|sp|Q2GDJ1|RUVA_NEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|88600207|gb|ABD45675.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str.
           Miyayama]
          Length = 193

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +  L ++ +++DV GV Y ++   R +  L + G   +L++E +  ++  +L
Sbjct: 1   MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFLENINKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++   +L  V+G+  ++A+ +L+ +   EL+ +I  ++   + +I GI  K+
Sbjct: 60  YGFECRKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RI+TE     + L S +    S  N    HI S       A+SALV LG+    +   
Sbjct: 119 VKRIITETYEDFLKLDSHLSGIASSTN---VHIAS------EAVSALVKLGFQHKPSHKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ ++ K   I + +++I LAL+ +
Sbjct: 170 VMEIMTKRPAI-EIAELITLALKML 193


>gi|315108548|gb|EFT80524.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL030PA2]
          Length = 194

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 10/193 (5%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   DR  F L+
Sbjct: 9   WVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADDRDAFELV 67

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
           Q+  GVG ++A  ++S + A +L  +I  ++   +  +PGI  K A++++ ELK K  +L
Sbjct: 68  QTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCSVPGIGRKGAAKMILELKDKVAAL 127

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV--VSVLKKEKNIAD 193
           +               H+ +   +       LV LG+    A  AV  V+ LK+      
Sbjct: 128 TP-----RGASVSGATHVVA--PWREQVAEGLVGLGWSAKDAEKAVDKVAALKEADPAMT 180

Query: 194 DSQIIRLALRAIS 206
              ++R ALR+++
Sbjct: 181 IGNLMRAALRSLA 193


>gi|119489537|ref|ZP_01622298.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106]
 gi|119454616|gb|EAW35763.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106]
          Length = 211

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 81/136 (59%), Gaps = 5/136 (3%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG +KG +  + ++      +L++   + Y +    R ++ L  +G+   +F    +R+
Sbjct: 1   MIGYLKGTVVAIQKNNSNRVILLLETNNIGYEVQIVPRMIAQLPTMGESIQVFTHLQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           DQ+ L+GF S  +R  F  L SV G+G ++A+ +L+ +  TELV++I+ +N+KV+A+ PG
Sbjct: 61  DQMVLYGFSSFAERDLFRQLVSVSGIGTQLAIALLNTLELTELVQAIVGENTKVLAKTPG 120

Query: 116 ISMKIASRIMTELKGK 131
           +  K A RI  ELK K
Sbjct: 121 VGTKTAQRIALELKTK 136


>gi|270262223|ref|ZP_06190495.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia
           odorifera 4Rx13]
 gi|270044099|gb|EFA17191.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia
           odorifera 4Rx13]
          Length = 204

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L  +G    +F +  +R+D   L
Sbjct: 1   MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPDLGQEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + S +     A   +       A SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPASATQAAELDAEAEAASALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 181 MVSKIAKPG---ADCETLIRDALRA 202


>gi|261878755|ref|ZP_06005182.1| crossover junction endoribonuclease subunit A [Prevotella bergensis
           DSM 17361]
 gi|270334761|gb|EFA45547.1| crossover junction endoribonuclease subunit A [Prevotella bergensis
           DSM 17361]
          Length = 206

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GK--IGDFCTLFVETHMRQDQ 57
           MI  I+G +  L     +++  G+ Y +   + T   + GK  +  +    ++T  R D 
Sbjct: 1   MIEYIQGELTELTPALAVVETGGIGYALSISLNTYDDIQGKKAVKLYVHEAIQTGGRDDN 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF S  +R+ + +L +V GVGA  A  +LS +T  EL  +I   N K+I  + GI 
Sbjct: 61  YTLYGFASKQERELYRMLITVSGVGANTARTMLSSLTPKELCNAIANGNEKLIKSVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A R++ +L+ K +  SS + + +     +        +    A+SAL  LG+    A
Sbjct: 121 LKTAQRVIVDLRDKIV--SSGIAEVLHAGTPDTKVSAVNTAVKDEAVSALTMLGFSPAPA 178

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           T  V ++L ++ ++  +  +++ AL+ I
Sbjct: 179 TKTVTAILTEQPDMVVE-MVVKEALKRI 205


>gi|281601276|gb|ADA74260.1| Holliday junction ATP-dependent DNA helicase ruvA [Shigella
           flexneri 2002017]
 gi|332766837|gb|EGJ97038.1| holliday junction DNA helicase RuvA [Shigella flexneri 2930-71]
          Length = 187

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 3/188 (1%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           +LI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L 
Sbjct: 1   MLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 60

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
              GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L 
Sbjct: 61  KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 120

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
             +    + +        +       A++ALV LGY   +A+  V  + + + +      
Sbjct: 121 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPDTS---SET 177

Query: 197 IIRLALRA 204
           +IR ALRA
Sbjct: 178 LIREALRA 185


>gi|227549154|ref|ZP_03979203.1| Holliday junction DNA helicase motor protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078774|gb|EEI16737.1| Holliday junction DNA helicase motor protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 206

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+  GV Y +     TL+ L + G+   +     ++ D + L
Sbjct: 1   MIDSLHGEVLSIGLDHAVIECAGVGYRLLAGPPTLARLTR-GETTRVLTSMVVKDDGVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS---KVIAQIPGIS 117
           +GF  D  R  F  LQ+V G+G ++A+  LS     EL   I   ++   K I  IPG+ 
Sbjct: 60  YGFADDGARTMFHRLQTVSGLGPKLALACLSVFEPAELAGLITAGDAAAIKRIQTIPGVG 119

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQ 176
            K+A R+  ELK K   L +  +   +      A + +  S A    + AL+ LG+  D+
Sbjct: 120 KKMAERMALELKDKIDGLYATSEPGAA----PSAPVTAGTSLAAEQVVEALIGLGF-ADK 174

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLAL 202
               VV  L +E+     S+++R AL
Sbjct: 175 VARGVVDTLIQERPGDSSSELLRAAL 200


>gi|148243841|ref|YP_001220080.1| DNA recombination protein RuvA [Acidiphilium cryptum JF-5]
 gi|146400404|gb|ABQ28938.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum
           JF-5]
          Length = 206

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 71/137 (51%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G    + +   +IDV GV Y ++ P  TL  +       T+ ++T M   +I L
Sbjct: 1   MITQLTGIPRRIGDQECVIDVHGVGYGVHVPSATLDMIEGEAGPVTILIQTRMSDSEISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D Q F  L  VQGVG   A+ +LS++   EL  +I   + K +  + GI    
Sbjct: 61  YGFATPADLQTFRKLVGVQGVGPATALNLLSQLAPEELWRAIREADQKALTAVKGIGPAA 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R+++EL+  A  L++
Sbjct: 121 AKRLISELESHAAKLAA 137


>gi|163786536|ref|ZP_02180984.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1]
 gi|159878396|gb|EDP72452.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1]
          Length = 193

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G +       V+ID  GV Y I   + T S   +I D   L + T++  R+D  
Sbjct: 1   MITHLEGKLVEKNPTDVVIDCNGVGYFINISLHTFS---QIPDRENLRLYTYLQVREDSH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S  +R+ F LL SV G+GA  A  +LS +T  ++ E I   +  +I  + GI  
Sbjct: 58  SLYGFSSKTEREIFKLLISVSGIGANTARTMLSSLTPDQVKEGIASGDVALIQSVKGIGA 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ +LK K + +  + +  +   N  +            A+SAL  LG+ + Q+ 
Sbjct: 118 KTAQRVIIDLKDKVLKVYGIDELSLIPNNTHKDE----------ALSALDVLGFNKKQSE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  +L+ + + A   QII+ AL+ +
Sbjct: 168 KVVDRILQTQPD-ALVEQIIKEALKNL 193


>gi|121610984|ref|YP_998791.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae
           EF01-2]
 gi|166231456|sp|A1WQ66|RUVA_VEREI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121555624|gb|ABM59773.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae
           EF01-2]
          Length = 191

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 70/126 (55%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ +   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSSFYNLPAVGERISLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R+A+ +LS ++  +L ++I  Q +  + ++PG+  + 
Sbjct: 61  YGFATAPERQAFRALIKITGVGPRMALSILSGMSVADLAQAIARQEAARLVKVPGVGKRT 120

Query: 121 ASRIMT 126
           A R++ 
Sbjct: 121 AERLLL 126


>gi|325954455|ref|YP_004238115.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa
           DSM 16922]
 gi|323437073|gb|ADX67537.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa
           DSM 16922]
          Length = 193

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 17/190 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +  ++  Y ++D  GV Y +   + T S L  I +  TL+ +  +R D   L
Sbjct: 1   MITQLRGRLVEVHPSYAVVDCNGVGYWVNISLNTYSSL-VIDEVITLYTQQIIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV GVG   AM +LS ++  E+  +I  +++K++  + GI  K 
Sbjct: 60  YGFNTIEERSIFQKLISVNGVGPASAMMMLSTLSPKEIQTAIYTEDAKLLQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQA 177
           A RI+ +LK K           +  +N E   + S+P      I A+SAL  LG  +  A
Sbjct: 120 AQRIIIDLKDK-----------LEEINLED--VNSLPHKNKTRIEALSALEVLGIPRKVA 166

Query: 178 TTAVVSVLKK 187
              +  VL K
Sbjct: 167 EKTIDQVLDK 176


>gi|313114599|ref|ZP_07800107.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623063|gb|EFQ06510.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 203

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           + V++   GV Y   CP      L  +G   T++    + ++ + L+GF ++  +  F +
Sbjct: 15  NAVVLSCGGVGYYAQCPASVAGALPGVGKEATIYTVMSVTENDVSLYGFATEEQQACFEM 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L +V GVG +V + +LS +    +  +I   + K      G+  K+A RI+ ELK K   
Sbjct: 75  LTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKLAQRIVLELKDKVAK 134

Query: 135 --LSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
             +  +  +D++  + + QA   S       AI+ALV+LGY Q +A  AV     K    
Sbjct: 135 GFVDGISLEDVAGASADTQASQGSS-----QAIAALVSLGYSQSEAALAV----SKIDAA 185

Query: 192 ADDSQIIRLALRAIS 206
               +II+LALR+++
Sbjct: 186 LPVEEIIKLALRSMA 200


>gi|223044126|ref|ZP_03614165.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14]
 gi|222442520|gb|EEE48626.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14]
          Length = 200

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 15/209 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  L+  +V+++  G+ Y I  P  +      +     +F    +R+D   L
Sbjct: 1   MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNQDVQIFTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F  L  V G+G + A+ +L+  +  E+  +I  +N   + Q PGI  K 
Sbjct: 60  YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A +I+ +LKGK         S++Q D++  N EQ+ +         A+ AL  LGY + +
Sbjct: 120 ARQIVLDLKGKVTITEEDSESLLQVDVN--NNEQSQVVK------EAMLALEALGYSK-R 170

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             + V  VL K+ +++   + ++L L+ +
Sbjct: 171 ELSKVEKVLNKQ-SVSSVDEAVKLGLQTL 198


>gi|126663097|ref|ZP_01734095.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38]
 gi|126624755|gb|EAZ95445.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38]
          Length = 193

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +       V+ID  GV Y I   + T S L    +   LF    +++D   L
Sbjct: 1   MIAHIQGRLVEKTPTEVIIDCNGVGYHINISLHTYSLLPD-SESLKLFTFLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F LL SV GVGA +A  +LS +  ++++++I   +   +  + GI  K 
Sbjct: 60  YGFVEKQERELFKLLISVSGVGASIARTMLSSLAPSQIIQAIASNDIGTMQSMKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+ +LK K + + ++ +  +  S  NK++            A+SAL  LG+ +  A 
Sbjct: 120 AQRIILDLKEKVLKVYNLDEVSVIESNTNKDE------------ALSALEVLGFARKAAE 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
             +  ++++  N A    +I+ AL+
Sbjct: 168 KVIDKIIRETPN-ATVENLIKQALK 191


>gi|312127829|ref|YP_003992703.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777848|gb|ADQ07334.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 197

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  +I
Sbjct: 1   MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNGTKFSEF--LGKEKRVYVSLKFNENLSEI 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDM---SCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           K ASRI+ ELK         ++++    S   KE+     +   ++    AL++LGY  D
Sbjct: 119 KTASRIILELK-------ETLKKEFKVGSTSGKEEKTYEKLEEISL----ALLSLGYDID 167

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    + S    E ++ D    I+LAL+ +S
Sbjct: 168 EVNQVLSSEDFSELSLEDG---IKLALKKLS 195


>gi|305681259|ref|ZP_07404066.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659464|gb|EFM48964.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii
           ATCC 14266]
          Length = 198

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 14/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +   + +I+  GV Y +     TL  L + G    + +   +R++   L
Sbjct: 1   MIVSLRGTVIDITAHHAVIECAGVGYQVLATPTTLGHLTR-GAETFILITMIVREESQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    R  F  LQ+V G+G ++A+   S  T  EL  +I   ++K + +IPG+  ++
Sbjct: 60  YGFLDAATRDMFATLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + ++      + V     +           + AL +LG+ +  A   
Sbjct: 120 AERMVVDLKDKVATYAAPETPTTAAVPHTDTY--------EQVLEALASLGFAEKTAEPV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + +VL      AD +     ALRA
Sbjct: 172 LTTVLA-----ADPTLTTPAALRA 190


>gi|315303293|ref|ZP_07873928.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596]
 gi|313628340|gb|EFR96838.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596]
          Length = 201

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIITTITPEYIVVETGQIGYQIITG-NPFSFQHLEGTETQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L  VV  D+     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LVDVVTSDIVYNTPENDIVSGLAPALEEAVLALEALGYSS-RELKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  L KE+++  D+  I+LAL+ ++
Sbjct: 176 VIPKLVKEEDLTSDAY-IKLALKLMT 200


>gi|291519343|emb|CBK74564.1| Holliday junction DNA helicase, RuvA subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 205

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  + E+ V+++  GV Y +   + T+  L  IG    L  +   ++D + L
Sbjct: 1   MFAYVRGTLSDIDENIVIVENNGVGYCLSSSMNTIRQLPAIGSEVKLNTKLIPKEDSLTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    + + F LL SV G+G + A+ +LS +T +++  ++  +++K  A  PGI  K 
Sbjct: 61  YGFYDKEELKMFELLLSVSGIGPKGALAILSSMTVSDIQFAVAGEDAKAFAACPGIGKKT 120

Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R + +LK K     +  + +  D+S        I    S     + ALV LGY    A
Sbjct: 121 AERAIIDLKDKVDIIGAFEAKITSDLSGKKSASPGI----SVKEEVLEALVALGYSASNA 176

Query: 178 TTAV 181
             A+
Sbjct: 177 ARAL 180


>gi|184201011|ref|YP_001855218.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201]
 gi|229560091|sp|B2GIL9|RUVA_KOCRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183581241|dbj|BAG29712.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201]
          Length = 213

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +++V G    ++   RTLS L ++G    L      R+D+  L
Sbjct: 1   MIASVTGEVAFVGATLAVVEVSGFGIEVHASPRTLSGL-RVGATTRLHTAYIARKDEAPL 59

Query: 61  -FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            FGF    +++ F ++  V GVG R A+  +S +   +   +I   + K    +PGI  K
Sbjct: 60  LFGFAQGDEKEIFTVMLGVSGVGPRTALAAVSVLGPEDARRAIAAGDDKAFTAVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL  K +     VQQ     N+ Q     +P +    + AL  LG+ +  A  
Sbjct: 120 SARRIVLELADKLVLPEPPVQQ----ANQPQ-----VPVWRDQVVDALTGLGWSEKDAVR 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +   L+ +  + D   +  + LRA+
Sbjct: 171 GIEDALQTQPELGDSGNVAEI-LRAV 195


>gi|309811443|ref|ZP_07705229.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185]
 gi|308434590|gb|EFP58436.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185]
          Length = 201

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 40  KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           + G+   L     +R+D + LFGF  D +R  F  +Q+V GVG R+A+ +L+     +L 
Sbjct: 39  RPGESMRLATSLVVREDSLTLFGFADDDERALFEQVQTVSGVGPRLALAMLAVHPPQQLA 98

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159
            +I   + + + ++PGI  K A RI+ EL+ K +S         S    + A    +P+ 
Sbjct: 99  TAIAGGDVRALTKVPGIGKKGAERIVLELRDKVVS--------ASGDGGQAAPQAVVPAT 150

Query: 160 AIN--AISALVNLGYGQDQATTAVVSV-LKKEKNIADDSQIIRLALR 203
           A       AL+ LG+   QA  AV  V  + E   A+   ++RLALR
Sbjct: 151 AGGDQVAEALIGLGWSAKQAEDAVAKVAARPEAEGANTPTVLRLALR 197


>gi|221141089|ref|ZP_03565582.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751470|gb|ADL65647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 200

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  + S    +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYSFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY +
Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169


>gi|187250915|ref|YP_001875397.1| Holliday junction resolvasome DNA binding subunit [Elusimicrobium
           minutum Pei191]
 gi|254766962|sp|B2KCD9|RUVA_ELUMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|186971075|gb|ACC98060.1| Holliday junction resolvasome, DNA binding subunit [Elusimicrobium
           minutum Pei191]
          Length = 202

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 19/210 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG I  L ED VLI V GV Y + C    +S L +  +      E+    D   L
Sbjct: 1   MIGYLKGQILSLSEDSVLILVNGVGYEVNCAPVAVSALEEGQETALYIAESISPYDGTVL 60

Query: 61  FGFLSDLDRQ-WFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGIS 117
           +GFL+  D+Q W +   S+   GA+ A+  L++   +  +   +I+ ++ K++  I G +
Sbjct: 61  YGFLTKEDKQLWAIFKTSIPNTGAKKALEYLNKALRSVADFHNAIVKKDPKILTGIFGFT 120

Query: 118 MKIASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            K A +++  L GK  A++++ V           +  I     F    + AL  LGY   
Sbjct: 121 AKTAEKLIHSLDGKMDAVTIAGV----------PKIKIEGEAPFMSEVMMALTALGYSPM 170

Query: 176 QATTAVVSVLKKEKNIADDS--QIIRLALR 203
           +A  A+  + K    +A+DS   IIR ALR
Sbjct: 171 EARKAIDQLYK--TGLANDSVENIIRAALR 198


>gi|229918406|ref|YP_002887052.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b]
 gi|259495643|sp|C4L522|RUVA_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229469835|gb|ACQ71607.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b]
          Length = 195

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 9/176 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  +  +Y+ +DV GV Y ++ P        +  +   +F   ++R+DQ  L
Sbjct: 1   MIEFVKGPVAYVCAEYITLDVSGVGYKVHVP--NPFFYREQDEHVIVFTHHYVREDQQTL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L SV G+G + A+ +++      L+++I  +N K + + PG+  K 
Sbjct: 59  YGFRSRRERELFNKLLSVSGIGPKGALAIVASGDIDALIDAIETENEKYLTKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A ++  +LKGK   L+     +     +  + +         A  ALV LGY + +
Sbjct: 119 AKQMALDLKGKLSELAPDYVPNEGLFAQGASELD-------EACEALVALGYSERE 167


>gi|328947934|ref|YP_004365271.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           succinifaciens DSM 2489]
 gi|328448258|gb|AEB13974.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           succinifaciens DSM 2489]
          Length = 206

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 12/182 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G + G +   + I+  G+ + +  P  +L  +  +G    +FV     ++ + L
Sbjct: 1   MFNSLTGVVTGKFPQKLFIETNGIEWDVTVPDTSLEKIPSVGIKGRVFVWMQHTENLMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  V G+G + A+ ++S I+   L E +   +   + ++PG+  K 
Sbjct: 61  FGFATENERALFFDLLKVDGIGPKGAVKIMSNISVAALAEILDSGDVDALKKVPGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +I+  LKGK   LS V  + + S V K  A+         + I ALV++GY + +A  
Sbjct: 121 AGKIILSLKGK---LSFVSNEKISSAVRKNNAY--------SDVIDALVSMGYDRAKAED 169

Query: 180 AV 181
           AV
Sbjct: 170 AV 171


>gi|294101862|ref|YP_003553720.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM
           12261]
 gi|293616842|gb|ADE56996.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM
           12261]
          Length = 201

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 116/213 (54%), Gaps = 23/213 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58
           M+  ++G +  + E+ V++DV G+ + I C   + S L    D  T+ + T+++  ++  
Sbjct: 1   MLRSLEGKVLHIGEENVILDVNGLGFDILC---SGSALRLCEDNETIRLTTYLQVSENGA 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF S+ +R+ F+ L +V+GVG RV + VL  ++ T+++ S+   ++    Q+PG+  
Sbjct: 58  TLFGFSSEQEREVFIKLLTVKGVGGRVGLAVLRTLSPTQVIRSVATSDTDTFLQVPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAI-SALVNLGYGQDQ 176
           K A R+  ELK         + ++M     E+     +PS  + N + +AL +LG+ Q++
Sbjct: 118 KTAERLCFELKRH-------LSEEMLAEFAEE----EVPSILVKNTVAAALRSLGFTQNE 166

Query: 177 ATTAVVSVLKKEKNIADDSQ----IIRLALRAI 205
              +V++ LK+E     D+     +++ ALR +
Sbjct: 167 V-YSVMNRLKREMGSEFDTTKEDILLKRALREL 198


>gi|47097030|ref|ZP_00234603.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str.
           1/2a F6854]
 gi|254898301|ref|ZP_05258225.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes J0161]
 gi|254912207|ref|ZP_05262219.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818]
 gi|254936535|ref|ZP_05268232.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900]
 gi|47014612|gb|EAL05572.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609129|gb|EEW21737.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900]
 gi|293590180|gb|EFF98514.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818]
          Length = 201

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGIEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRE-LKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  L KE ++  D+  I+LAL+ ++
Sbjct: 176 VIPKLAKEADLTSDA-YIKLALQLMT 200


>gi|237785621|ref|YP_002906326.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|259495637|sp|C4LIX8|RUVA_CORK4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|237758533|gb|ACR17783.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 207

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 9/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  +YV+I+  GV Y        L  L K G+   + V  ++R D I L
Sbjct: 1   MIDSLHGEVLHVGLNYVVIECSGVGYRATASPSLLGTLRK-GEDARILVTMNVRDDGIDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F SD  RQ F +L+ V GVG   AM + S     E    I  ++   +  + GI  + 
Sbjct: 60  YAFESDEARQMFAMLRKVSGVGPTSAMAICSIFKPDEFARIITDEDDAELRNVKGIGKRT 119

Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ +LK K     S  S  +         +A + S          ALV LG+ + QA
Sbjct: 120 AERIIVDLKSKVAVFDSGDSASEPQSGVGGNSEAEVDS--GVVGTVTQALVELGFPEKQA 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207
                S   +  ++   S+I++ ALR++S 
Sbjct: 178 EKTATSAAAEGGSV---SEILKRALRSMSS 204


>gi|284048863|ref|YP_003399202.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM
           20731]
 gi|283953084|gb|ADB47887.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM
           20731]
          Length = 204

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I G ++ +  ++ L+D QGV Y I+     LS + ++     ++    +R+D ++L
Sbjct: 1   MIGFITGRVDHIGTNFCLVDTQGVGYRIFLNTGDLSRI-QVDQKVKIYTYLSVREDALQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS      F  L +V G+G +VA G+LS         ++  ++ K + ++PGI  K 
Sbjct: 60  FGFLSYDAYSLFTQLITVSGIGPKVAQGILSAAKVDAFYLAVKSRDLKFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179
           A R++ EL  K ++    ++++ +    +   +    +  + A++  L  LGY Q +   
Sbjct: 120 AERLLLEL--KDMTGPEGLEEEGTAGGFD-GDVPEDDTTTLGAVAEGLSYLGYTQGE--- 173

Query: 180 AVVSVLKKEKNIADD--SQIIRLALRAIS 206
            +  VLKK K  AD     +++ ALR ++
Sbjct: 174 -IAQVLKKLKVTADSRAEDLLKEALRLLA 201


>gi|164687538|ref|ZP_02211566.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM
           16795]
 gi|164603312|gb|EDQ96777.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM
           16795]
          Length = 197

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 12/183 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T   + K G    +F +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYLDRIVLENNGIGYEINVSSFTAQSVQK-GKDAKIFTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  + + F LL SV  +G +V +G+LS  T  +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFASRKELEMFKLLTSVSKIGPKVGLGILSCATPPQLSAYILSEDIAKLSKCPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178
           A RI+ ELK K          D      E       P+      A+ AL+ LGY   +A 
Sbjct: 120 AERIILELKDKV---------DKESAEFEATLFNQAPTGLELDEAVEALLALGYSNVEAK 170

Query: 179 TAV 181
            AV
Sbjct: 171 EAV 173


>gi|317485564|ref|ZP_07944441.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6]
 gi|316923244|gb|EFV44453.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6]
          Length = 203

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 8/175 (4%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++   GV Y +Y P +T   L + G     ++   +R+D   LFGF +  +RQ F++L 
Sbjct: 18  VVVTEGGVGYEVYLPQQTRLQLPERGGHVRFYICHIVREDAQELFGFETWDERQTFIVLT 77

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           S+  VGAR A+G+LS     +L   ++  +   + Q+ GI  K A  I  ELK K     
Sbjct: 78  SISKVGARTALGILSAFRPDDLRRLVLEDDVLALTQVSGIGKKSAQHIFLELKYK----- 132

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
            +  +DM      Q  +    S   +A++ L  LGY + +A   + ++L +E ++
Sbjct: 133 -LKVEDMPAAASLQLGVPG--SVYRDALTGLEGLGYAEAEAAPVLKNILHEEPDL 184


>gi|268608399|ref|ZP_06142126.1| Holliday junction DNA helicase RuvA [Ruminococcus flavefaciens
           FD-1]
          Length = 206

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      + +I+  GV Y       T++ LG++G    L+   ++R+D + L
Sbjct: 1   MIYSLKGKLTVKELGFAVIECGGVGYGCKTSYNTIASLGEVGSEAMLYTHLYVREDAVEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F LL SV GVG + A+ +LS +T  +    +   +SK   +  GI  K 
Sbjct: 61  FGFATQQELSCFRLLISVSGVGPKAAISILSDVTPEKFAFLVASGDSKSFTRTKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  S S              +      S +  A+ AL+ LGY Q + T  
Sbjct: 121 AQRIVLELKDKISSESISGSVSGDAAAFAPSSAAPSDSVS-EALEALMVLGYTQGE-TAP 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           ++  L    +  D   +I+  LR ++ 
Sbjct: 179 ILGKLDPSMSTQD---LIKETLRLLTA 202


>gi|312877191|ref|ZP_07737160.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796000|gb|EFR12360.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 197

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+I+   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGIIQEVFSNYVIINYNNIYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        VV    +   KE+     +   ++    AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVV----ATTGKEEKTYEKLEEISL----ALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S    E ++ D    I+LAL+ +S
Sbjct: 171 QVLSSEDFSELSLEDG---IKLALKKLS 195


>gi|326803735|ref|YP_004321553.1| Holliday junction DNA helicase RuvA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651259|gb|AEA01442.1| Holliday junction DNA helicase RuvA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 203

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L  + V+++  G+ Y IY P        + G    +++   + QD IRL
Sbjct: 2   MYQYIKGLLVDLTSEAVVVETAGLAYYIYFP-NPYRLSDQKGQQVQVWLYQAVSQDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L SV G+G + A+ +L+       + +I  +N K + + PG+  K 
Sbjct: 61  YGFFDQAEKQLFLQLISVSGIGPKSALSILAYGDQAGFIAAIESENVKFLTKFPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+ K   L S        V  +Q+    M    I   +AL +LGY    A   
Sbjct: 121 AQQIILDLQSKLSRLKSEALPADQEVISDQSESSQM---MIELEAALNSLGY----AKRE 173

Query: 181 VVSVLKKE--KNIADDSQIIRLALRAISC 207
           +  V+KK     + + +  IR+ALR I+ 
Sbjct: 174 IDQVIKKGDFSEVDNTADAIRVALRYITL 202


>gi|15639532|ref|NP_218982.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025771|ref|YP_001933543.1| Holliday junction DNA helicase, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|6094206|sp|O83554|RUVA_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560146|sp|B2S3D5|RUVA_TREPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3322833|gb|AAC65527.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018346|gb|ACD70964.1| Holliday junction DNA helicase, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059920|gb|ADD72655.1| Holliday junction DNA helicase RuvA [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 227

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     + + ++V G+ + I     + +  G++G    +F   + R+D +RL
Sbjct: 1   MFESISGILTLHERERLCVEVHGIEWEIAVSAYSSAAFGEVGSHVKVFTWLYHREDALRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V+G+G + A+ VLS I++  L  ++   +   + +IPGI  K 
Sbjct: 61  FGFSNVQERTLFLSLTKVEGIGPKQALKVLSSISSQALCAALDTGDLCALQRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAI-NAISALVNLGYGQD 175
           A R++  LKG  ++L+       S  +   AH     C+  +  I + ++ALV +GY + 
Sbjct: 121 AQRMLLALKG-TLALTDAASCAQSQTDDRAAHPSNLGCAPHAREIEDLVTALVQMGYDRK 179

Query: 176 QATTAVV 182
            A   + 
Sbjct: 180 MAAEVIA 186


>gi|27468243|ref|NP_764880.1| holliday junction DNA helicase [Staphylococcus epidermidis ATCC
           12228]
 gi|57867153|ref|YP_188781.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           RP62A]
 gi|251811047|ref|ZP_04825520.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875933|ref|ZP_06284800.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           SK135]
 gi|293366401|ref|ZP_06613080.1| crossover junction endoribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|33301648|sp|Q8CS90|RUVA_STAES RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71153736|sp|Q5HNQ9|RUVA_STAEQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|27315789|gb|AAO04924.1|AE016748_158 holliday junction DNA helicase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637811|gb|AAW54599.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           RP62A]
 gi|251805423|gb|EES58080.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294958|gb|EFA87485.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           SK135]
 gi|291319526|gb|EFE59893.1| crossover junction endoribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724713|gb|EGG61219.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU144]
 gi|329733747|gb|EGG70073.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU045]
 gi|329737232|gb|EGG73486.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU028]
          Length = 200

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57
           M   IKG +  L+  +V+++  G+ Y I  P   R    L K +  + +L V    R+D 
Sbjct: 1   MYAYIKGTLSQLFPTHVVVETCGIGYEIQTPNSYRFQKYLEKEVQIYTSLIV----REDA 56

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + Q PGI 
Sbjct: 57  QLLYGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDM--SCVN-KEQAHICSMPSFAINAISALVNLGYGQ 174
            K A +I+ +LKGK ++++     D+  + VN  EQ  I S       A+ AL  LGY +
Sbjct: 117 KKTARQIVLDLKGK-VTITEENSDDLLQTQVNGNEQNQIIS------EALLALQALGYSK 169

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            + T    S+ K   N  D++  +++ L+ +
Sbjct: 170 RELTKVEKSLNKHNVNSVDEA--VKIGLQTL 198


>gi|144900756|emb|CAM77620.1| Bacterial DNA recombination protein, RuvA [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 75

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI K+KG I+ L +D+ ++DV GV Y+++C  RTL  L ++G    L VETH+R+D I L
Sbjct: 1  MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59

Query: 61 FGFLSDLDRQWFMLL 75
          +GFL   +R WF LL
Sbjct: 60 YGFLEPGERDWFNLL 74


>gi|111023845|ref|YP_706817.1| Holliday junction DNA helicase motor protein [Rhodococcus jostii
           RHA1]
 gi|122955049|sp|Q0S1C7|RUVA_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110823375|gb|ABG98659.1| holliday junction DNA helicase [Rhodococcus jostii RHA1]
          Length = 200

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GSEARLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPDALRAALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGK---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ EL+ K     S S  V          +  I          + ALV LG+   QA
Sbjct: 120 AERMVVELRDKVDAVASTSGAVPLGAGGGGSVRDQI----------VEALVGLGFPAKQA 169

Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202
             A  SVL  E   +  S  +R AL
Sbjct: 170 EQAADSVL-AEAPESTTSTALRSAL 193


>gi|186683711|ref|YP_001866907.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102]
 gi|186466163|gb|ACC81964.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102]
          Length = 228

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 66/116 (56%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
           ++V G+ Y +  P R  + L + G    +F    +R++   L+GF S  +R  F  L +V
Sbjct: 42  LEVNGLGYDLQVPQRLANQLPESGGVAQIFTHFQIREEVPYLYGFASPAERDLFRHLLTV 101

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
            G+GA +A+ +L  +   +LV++II  N++++ Q PG+  KIA RI  ELK K + 
Sbjct: 102 TGIGAALAIALLDTLELPDLVQAIIAGNTQILIQAPGVGKKIAERICLELKSKLVE 157


>gi|257452123|ref|ZP_05617422.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R]
 gi|317058668|ref|ZP_07923153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R]
 gi|313684344|gb|EFS21179.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R]
          Length = 193

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 19/166 (11%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +Y  ++V G+ Y +Y  +R    + ++G    +++  H+R+++ +L GFL + +R+ F L
Sbjct: 15  EYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKLIGFLEEKERKLFEL 73

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISMKIASRIMTELKGKA 132
           L SV+G+G  +A+  LS     +LV  I  Q  KV  + +IP +  K A +I+ +     
Sbjct: 74  LLSVKGIGVSLALAALSTYPVEQLVAYI--QEEKVGQLKKIPKLGEKKAQQIILD----- 126

Query: 133 ISLSSVVQQDMSCVNKEQAHI--CSMPSFAINAISALVNLGYGQDQ 176
                 +Q  +     EQ  +   SM ++A +  SAL NLGY + +
Sbjct: 127 ------IQSKLKHFGVEQRFVEDSSM-AWAEDIASALENLGYAKKE 165


>gi|148269895|ref|YP_001244355.1| Holliday junction DNA helicase RuvA [Thermotoga petrophila RKU-1]
 gi|166231455|sp|A5IKQ6|RUVA_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147735439|gb|ABQ46779.1| Holliday junction DNA helicase subunit RuvA [Thermotoga petrophila
           RKU-1]
          Length = 188

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++ + GV + I C ++T   + + G+ C L     + QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK +     S   +DM   ++              ++ AL++LGY + QA  
Sbjct: 120 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALISLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKHVYREGMKT---SELIKEALKFLS 186


>gi|319937623|ref|ZP_08012027.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp.
           29_1]
 gi|319807265|gb|EFW03877.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp.
           29_1]
          Length = 188

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 18/188 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  D++++D QG+ Y+IY         GK      ++V   +++D I L
Sbjct: 1   MYSYIKGIIVDMARDHIVVDNQGIGYLIYVSNPYQFTKGK---ETLVYVYQQVKEDGILL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  ++  F+ L  V+G+G + A+G+L+      ++++I  +N   + +IPGI  K 
Sbjct: 58  FGFLSKEEKDLFLKLIMVKGIGCKTAIGILATGDVNAIIQAIESKNIVYLKKIPGIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK    + V+ +           I +   F   AI  L+ LGY + Q    
Sbjct: 118 AQQIILDLQGK---FNGVISE----------MILTSVEFD-EAIEVLIALGY-KRQEVDK 162

Query: 181 VVSVLKKE 188
           V++ L +E
Sbjct: 163 VMNTLSQE 170


>gi|239917790|ref|YP_002957348.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus
           NCTC 2665]
 gi|259495650|sp|C5CCI2|RUVA_MICLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239838997|gb|ACS30794.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus
           NCTC 2665]
          Length = 214

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHM--RQD 56
           MI  + G +E +  D  +I V G+        +TLS L  G+ G      V+TH+  ++D
Sbjct: 1   MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHEGRPG-----AVQTHLVVKED 55

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + L+GF    +R+ F +L +  GVG R+A+ +LS      +  ++  ++ K + ++PGI
Sbjct: 56  ALTLYGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGI 115

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K+A +I+ EL G+       V    +  + E A + ++  +  + + A+  LG+ + +
Sbjct: 116 GPKMARKIIVELSGRLAPTGEPVPGAEAEASDEPA-VETV--WHADVVQAMAGLGWSEKE 172

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A  AV + +     + D+ + +   LRA
Sbjct: 173 ALKAVEATVAARPEL-DEGRDVAALLRA 199


>gi|222109711|ref|YP_002551975.1| holliday junction DNA helicase ruva [Acidovorax ebreus TPSY]
 gi|254766958|sp|B9MCH5|RUVA_DIAST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221729155|gb|ACM31975.1| Holliday junction DNA helicase RuvA [Acidovorax ebreus TPSY]
          Length = 190

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +   + T   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVLVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +   V        N  QA I          + AL+ LGY  D+   A
Sbjct: 121 AERLLLELKGKLGADVGVRAH---AANDNQADI----------LQALLALGY-NDKEAAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +  L  +  +   S+ I+LAL+++S
Sbjct: 167 ALKALPADVGV---SEGIKLALKSLS 189


>gi|61657382|emb|CAI44298.1| holliday junction DNA helicase [Thermotoga petrophila]
          Length = 191

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++ + GV + I C ++T   + + G+ C L     + QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK +     S   +DM   ++              ++ AL++LGY + QA  
Sbjct: 123 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALISLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKHVYREGMKT---SELIKEALKFLS 189


>gi|226366281|ref|YP_002784064.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4]
 gi|254767383|sp|C1B4D0|RUVA_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226244771|dbj|BAH55119.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4]
          Length = 200

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GTEARLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPEALRSALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGK--AI-SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ EL+ K  A+ S S  V          +  I          + ALV LG+   QA
Sbjct: 120 AERMVVELRDKVDAVGSTSGAVPLGAGGGGSVRDQI----------VEALVGLGFPAKQA 169

Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202
             A  SVL  E   +  S  +R AL
Sbjct: 170 EQATDSVL-AEAPESTTSSALRSAL 193


>gi|226306411|ref|YP_002766371.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4]
 gi|259495653|sp|C0ZZ47|RUVA_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226185528|dbj|BAH33632.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4]
          Length = 199

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    LF    +R+D + L
Sbjct: 1   MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     +  F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  ++++        V      + S  S     + AL  LG+   QA  A
Sbjct: 120 AERMVVELRDKVDAVATTAGAASGAV------VGS--SIRDQIVEALEGLGFPIKQAEQA 171

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
             SVL  E   A  S  +R AL
Sbjct: 172 TDSVL-AESPEATTSVALRSAL 192


>gi|326622940|gb|EGE29285.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 187

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 25/199 (12%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           +L++  GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L 
Sbjct: 1   MLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 60

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK----- 131
              GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +     
Sbjct: 61  KTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLH 120

Query: 132 ------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVL 185
                 A+ L        +  + EQ            A++ALV LGY   +A+  V  + 
Sbjct: 121 GDLFTPAVDLVLTSPASPTSEDAEQ-----------EAVAALVALGYKPQEASRMVSKIA 169

Query: 186 KKEKNIADDSQIIRLALRA 204
           + +   A    +IR ALRA
Sbjct: 170 RPD---ASSETLIRDALRA 185


>gi|257431064|ref|ZP_05607443.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433750|ref|ZP_05610108.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436665|ref|ZP_05612709.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257278267|gb|EEV08909.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281843|gb|EEV11980.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284016|gb|EEV14139.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M876]
          Length = 203

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 4   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 63  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY +
Sbjct: 123 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSK 172


>gi|49483886|ref|YP_041110.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425766|ref|ZP_05602190.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428426|ref|ZP_05604824.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|282904222|ref|ZP_06312110.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906048|ref|ZP_06313903.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908961|ref|ZP_06316779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911278|ref|ZP_06319080.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914447|ref|ZP_06322233.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919416|ref|ZP_06327151.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924793|ref|ZP_06332459.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958402|ref|ZP_06375853.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503520|ref|ZP_06667367.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510539|ref|ZP_06669244.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537082|ref|ZP_06671762.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428217|ref|ZP_06820849.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590815|ref|ZP_06949453.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus MN8]
 gi|56749557|sp|Q6GG62|RUVA_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49242015|emb|CAG40713.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271460|gb|EEV03606.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275267|gb|EEV06754.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|282313159|gb|EFB43555.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317226|gb|EFB47600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321628|gb|EFB51953.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324973|gb|EFB55283.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327225|gb|EFB57520.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331340|gb|EFB60854.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595840|gb|EFC00804.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790551|gb|EFC29368.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919927|gb|EFD96995.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095186|gb|EFE25451.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466430|gb|EFF08951.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128575|gb|EFG58209.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575701|gb|EFH94417.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312437891|gb|ADQ76962.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195545|gb|EFU25932.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 200

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY +
Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSK 169


>gi|182439809|ref|YP_001827528.1| Holliday junction DNA helicase RuvA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780473|ref|ZP_08239738.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf.
           griseus XylebKG-1]
 gi|229560130|sp|B1W3G3|RUVA_STRGG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|178468325|dbj|BAG22845.1| putative Holliday junction DNA helicase subunit B [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660806|gb|EGE45652.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf.
           griseus XylebKG-1]
          Length = 208

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 19/215 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGREARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFANDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A +++ ELK   G+ +  + + QQ +         + S   +     +AL+ LGY   +A
Sbjct: 120 AQKLLLELKDRLGEPVG-AHIGQQGIGT------PVTS--GWRDQLQAALIGLGYASREA 170

Query: 178 TTAVVSVLKK-EKNIADDS-----QIIRLALRAIS 206
             AV +V  + E  +A+ +     Q++R AL+ ++
Sbjct: 171 DEAVNAVAPQAEAAVAEGTAPPVPQLLRAALQTLN 205


>gi|121595991|ref|YP_987887.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42]
 gi|166229625|sp|A1WC36|RUVA_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120608071|gb|ABM43811.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42]
          Length = 190

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +   + T   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +   V        N  QA I          + AL+ LGY  D+   A
Sbjct: 121 AERLLLELKGKLGADVGVRAH---AANDNQADI----------LQALLALGY-NDKEAAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
            +  L  +  +   S+ I+LAL+++S
Sbjct: 167 ALKALPADVGV---SEGIKLALKSLS 189


>gi|212704638|ref|ZP_03312766.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098]
 gi|212672037|gb|EEB32520.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098]
          Length = 203

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 7/169 (4%)

Query: 23  GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82
           GV Y +  P  T++ L   G+   L+    +R+D  +LFGF +  +RQ F +L ++  VG
Sbjct: 24  GVGYELDLPAHTMASLPGRGESVALYTSLVVREDAQQLFGFATFEERQVFEVLLTISKVG 83

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD 142
           AR A+ +LS     +L   ++ ++   + ++ GI  K A  +  ELK K + +  V Q  
Sbjct: 84  ARTALAILSLYRPDDLRRIVLEEDVDALTRVSGIGKKTAQHVFLELKYK-LKVEDVPQAA 142

Query: 143 MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
           +   N     +        + +  L NLGY +D+    V ++L +E ++
Sbjct: 143 VLAPNGRPGSVFR------DVLDGLSNLGYSEDECAPVVKNILLQEPDL 185


>gi|215427996|ref|ZP_03425915.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T92]
 gi|289751217|ref|ZP_06510595.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T92]
 gi|289691804|gb|EFD59233.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T92]
          Length = 196

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L  V GVG R+AM  L+   A  L + +   N   + ++PGI  + 
Sbjct: 60  YGFPDGETRDLFLTLLLVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K      V             H    P      + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDK------VGVAATGGALSTNGHAVRSP-----VVEALVGLGFAAKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
             +VL    + A  S  +R AL
Sbjct: 169 TDTVLAANHD-ATTSSALRSAL 189


>gi|218264168|ref|ZP_03478052.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222214|gb|EEC94864.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii
           DSM 18315]
          Length = 197

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 8/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T +      D   ++V   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPARMVLECAGIGYELNISLNTYTFYNGKAD-GKVYVYEIIREDAHVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F++L +V GVG   A  +LS ++ +ELV +I  ++   +  + GI  K 
Sbjct: 60  FGFAGIEERELFLMLTTVPGVGPNTARMILSSLSPSELVRAIADKDENSLVAVKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  ++     + ++ V+  +    S  + A  A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKAV-----EGLTTVSTPKTP-ASNNAVAEEAVAALVMLGFQKAASQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++LK   ++A + Q+I+ ALR
Sbjct: 174 VHTILKGSPSLAVE-QVIKTALR 195


>gi|332295726|ref|YP_004437649.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Thermodesulfobium narugense DSM 14796]
 gi|332178829|gb|AEE14518.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Thermodesulfobium narugense DSM 14796]
          Length = 194

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 24/211 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLS-CLGKIGDFCTLFVETHMRQDQIR 59
           MI  I GN+ G  E+ ++++  G+ Y+I  P   L     K GD   L++      +  +
Sbjct: 1   MIAYIVGNLIGFIENSIIVENNGLGYLIKLPPYLLEKNKNKKGDIIELYISHQFIGESQQ 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKV--IAQIPGI 116
           LFGF S  D + F  L  + GVG ++A+ ++S   T   L+  + L+N  +  +  IPG+
Sbjct: 61  LFGFESISDLESFQKLLKIHGVGVKLALQIISSFKTNPTLI--LDLKNDHISSLKSIPGV 118

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A RI  ELKG     S V   D + +                A+ ALV+LG    +
Sbjct: 119 GEKTAKRIFEELKGCFPEFSEVKFDDRAKL----------------AVDALVSLGVSFQK 162

Query: 177 ATTAVVSVLK--KEKNIADDSQIIRLALRAI 205
           A   V+  LK  ++ NI     II +A++ I
Sbjct: 163 AKEVVIDTLKDVQDLNIIKSEDIITMAIQRI 193


>gi|16800636|ref|NP_470904.1| Holliday junction DNA helicase RuvA [Listeria innocua Clip11262]
 gi|20455250|sp|Q92BI1|RUVA_LISIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|16414055|emb|CAC96799.1| ruvA [Listeria innocua Clip11262]
 gi|313618794|gb|EFR90690.1| holliday junction DNA helicase RuvA [Listeria innocua FSL S4-378]
          Length = 201

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG ++ +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIVKTITPEYIVVETGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRE-LKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  + KE ++  D+  I+LALR ++
Sbjct: 176 VIPKMAKENDLTSDA-YIKLALRLMT 200


>gi|296331680|ref|ZP_06874149.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675361|ref|YP_003867033.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151275|gb|EFG92155.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413605|gb|ADM38724.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 201

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 108/207 (52%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P      + K  +  T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPN---PFIYKERNQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L       ++++I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +I+ +LKGK   L+ VV + +  +  ++E+    +  +    A+ AL  LGY + +  
Sbjct: 118 ARQIILDLKGK---LADVVPEMIENLFNHEERLEKQTAETALEEALEALRVLGYAEKE-I 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V+  LK++  +  D Q ++ AL+ +
Sbjct: 174 KKVLPHLKEDTGLTTD-QYVKKALQKL 199


>gi|169824513|ref|YP_001692124.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
 gi|302380570|ref|ZP_07269035.1| Holliday junction DNA helicase RuvA [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233766|ref|ZP_07320420.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4]
 gi|229560032|sp|B0S1J4|RUVA_FINM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167831318|dbj|BAG08234.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
 gi|302311513|gb|EFK93529.1| Holliday junction DNA helicase RuvA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495200|gb|EFL54952.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4]
          Length = 198

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 20/182 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHMRQDQI 58
           M   I G I  ++E+Y++++   + Y I+        +    ++   T FVE   R+D  
Sbjct: 1   MYSYIIGVITEVHENYIVLENNNIGYKIFITDFFRDNVSAFDEYKVYTEFVE---REDAS 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S  +R+ F LL  V  +G + AM +LS +T  E   +II  + K++ Q PG+  
Sbjct: 58  ILYGFSSQKERELFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDM----SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           K ASRI+ ELK K       +++D       VNKE     +   F   A  AL+ LGY +
Sbjct: 118 KTASRIILELKEK-------IEKDFVPSEKPVNKEVKR-SNDSEF---AREALLQLGYFK 166

Query: 175 DQ 176
           + 
Sbjct: 167 ND 168


>gi|78044333|ref|YP_360355.1| Holliday junction DNA helicase RuvA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|90134706|sp|Q3ABX9|RUVA_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77996448|gb|ABB15347.1| Holliday junction DNA helicase RuvA [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 195

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D V++DV G+ + +    R L  L  +     ++    +R+D   L
Sbjct: 1   MIAVLKGKVLDKTLDSVVVDVNGIGFKVAVLPRELGSL-NLNSEVVMYTSLQVREDGWFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +  R++F LL SV G+G + A+ +L+  T  +L   I  ++ K + ++PG+  K 
Sbjct: 60  YGFSDEETRKFFDLLLSVSGIGPKAALAILNEFTPEKLNWVIANKDEKALTKVPGVGKKN 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN 147
           A R+  ELK K I  +S    + S  N
Sbjct: 120 AQRLFLELKDK-IGYTSFTSNEESVEN 145


>gi|313888460|ref|ZP_07822127.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845489|gb|EFR32883.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 194

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 20/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      Y++++  G+ YI+    R L    +  +   + +   +R+D   L
Sbjct: 1   MIEFLRGRVHSTDRGYLVLESNGIGYIVNMVERELHTFYE-NEEVFINIRLVLREDAAIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LL SV G+G ++AMG+L       + + II ++ K + ++PGI  K 
Sbjct: 60  YGFRHIETRDAFDLLTSVTGIGPKLAMGILDGDDVFNIAKYIISKDEKSLTKLPGIGKKT 119

Query: 121 ASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A RI+ ELK K    A+ L+S+   D+  + ++            +A+ AL++LGY    
Sbjct: 120 AQRIILELKDKVEKLALDLTSMT-DDVEIIEEKDD----------SAVEALISLGYNVYD 168

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           A  A    L+K     D S+ IR AL+
Sbjct: 169 AKKA----LEKVDPSLDISERIREALK 191


>gi|300774281|ref|ZP_07084145.1| crossover junction ATP-dependent DNA helicase RuvA
           [Chryseobacterium gleum ATCC 35910]
 gi|300506925|gb|EFK38059.1| crossover junction ATP-dependent DNA helicase RuvA
           [Chryseobacterium gleum ATCC 35910]
          Length = 194

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ L   Y +I+VQGV Y +   + T   L  +     LF++  +R+D   L
Sbjct: 1   MIFSLQGIVQELTPTYAVINVQGVGYYVGISLMTSQTL-VLNQQTFLFIQQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F LL SV GVGA  A+ +LS ++  E+  +I+  NS +I +  GI  K 
Sbjct: 60  FGFNTRSEKEMFNLLISVNGVGAVSALILLSTLSLDEIASAILSGNSALIQKAKGIGAKT 119

Query: 121 ASRIMTELKGK 131
           A RI+ +LK K
Sbjct: 120 AERIIVDLKDK 130


>gi|163814140|ref|ZP_02205532.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759]
 gi|158450589|gb|EDP27584.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759]
          Length = 208

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 8/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +E    + ++++  G+ Y +    + ++ L  +     +F    +R+D+I L
Sbjct: 1   MISYITGTLEYQSGNSIVVECGGIGYSMMISGQFMNRLPAMHSHIKVFTYMSVREDEISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    + + F +L SV GVG + AM +LS +T  EL  +++ ++ K I +  GI  K 
Sbjct: 61  YGFYDRDELEVFKVLLSVNGVGPKAAMSILSALTVNELRLAVVSEDVKAITRANGIGTKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS-CVNKEQAHICSMPSFAI----NAISALVNLGYGQD 175
           ASRI+ ELK K + L  ++       +N  +     +    I    N ++AL  LGY   
Sbjct: 121 ASRIILELKDK-LRLEDMIDAAYEDAMNGSRVGSGGVAQSDIDTRANVVAALTALGYSGV 179

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +A  AV  V   +    D+ Q+++ +L+ I
Sbjct: 180 EAGRAVNRVEGWQD--MDEEQLLKASLKNI 207


>gi|223938504|ref|ZP_03630396.1| Holliday junction DNA helicase RuvA [bacterium Ellin514]
 gi|223892766|gb|EEF59235.1| Holliday junction DNA helicase RuvA [bacterium Ellin514]
          Length = 201

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V +DV GV Y +  P+ +   L + G    L     +R+D   L
Sbjct: 1   MINFLHGKLVEALPTQVTVDVNGVGYEVLIPLSSFDKLPQPGGEVKLLTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF++  +R+ F +L+ +V G+G ++A+ +LS +  T L  ++   + K ++QI G+  K
Sbjct: 61  YGFMTAGEREMFRLLMNTVTGIGPKLALNILSGMNVTMLRGAVSNGDVKSLSQISGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQAT 178
            A RI+ ELK K       +    +          S P   +N A+ AL+ LG+ Q +A 
Sbjct: 121 TAERIVVELKDK-------MGAAGAWEAASAQRSLSEPDQRVNDAVLALMALGFKQPEAH 173

Query: 179 TAVVS---VLKKEKNIADDSQIIRLALR 203
             V S   +L ++  + D   ++R +L+
Sbjct: 174 DTVRSAQVLLGQQATVED---LVRASLK 198


>gi|307718817|ref|YP_003874349.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM
           6192]
 gi|306532542|gb|ADN02076.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM
           6192]
          Length = 197

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G   G+  + VLI+  G+ + I  P   LS L   GD   L V  + R+D + L
Sbjct: 1   MLYSLSGVYRGIEGEKVLIETGGLTWEIDVPSSLLSQLPDPGDSLLLHVYLYHREDVLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R+ F+ L  VQG+G R A+ ++S +      E I  ++   +A+ PGI  K 
Sbjct: 61  IGFASREERRLFLDLLKVQGIGPRQALRIISSVPVPLFREIIQKEDLARLAKTPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG      S V+Q      +   H           + ALV +G+ + +A   
Sbjct: 121 AQKLLLTLKG------SYVRQGTGDTEEAGPH--------RELVEALVEMGFDRARAERV 166

Query: 181 VVSVLKK 187
           +  ++++
Sbjct: 167 LPDIIRE 173


>gi|224418856|ref|ZP_03656862.1| Holliday junction DNA helicase RuvA [Helicobacter canadensis MIT
           98-5491]
 gi|253828156|ref|ZP_04871041.1| Holliday junction DNA helicase motor protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313142373|ref|ZP_07804566.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           canadensis MIT 98-5491]
 gi|253511562|gb|EES90221.1| Holliday junction DNA helicase motor protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313131404|gb|EFR49021.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           canadensis MIT 98-5491]
          Length = 191

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 19/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           MI  ++G I       + I+  GV Y ++  ++T + + +  GD  TL     +R+D   
Sbjct: 1   MIIALEGKIFAKEPTKIAINCTGVVYEVFISLQTSNQITQNKGDSITLLTTHIIREDVQN 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL   +++ F  L  + GVG +VAM +LS  T     + +   + K + ++PGI  K
Sbjct: 61  LFGFLESSEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVEGNDIKSMQRVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL G ++ LS   Q + +  + +   +          I AL +LGY  D    
Sbjct: 121 SAGRILVELSGWSLELS---QNETNHKDSDYNQV----------ILALESLGYKNDIIQK 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  +   EKN  +  Q+++ AL+ I
Sbjct: 168 AIKGL---EKN--EVGQMVKAALKKI 188


>gi|126696254|ref|YP_001091140.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9301]
 gi|166230582|sp|A3PCR4|RUVA_PROM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126543297|gb|ABO17539.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9301]
          Length = 225

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 83/141 (58%), Gaps = 13/141 (9%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVE 50
           MI  I G++  L++     +VLI+ QG+ Y I      +  +R      K     TL+V+
Sbjct: 1   MISWINGDLVDLWQTNQKFFVLINCQGLGYEIQILESFFLKLRKNQISTK---NITLWVK 57

Query: 51  THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110
              ++D   LFGF S+  + +F+ + S++GVG+++ +G+L++ + +E++ +I  Q+ K+I
Sbjct: 58  HIKKEDSDLLFGFTSNEQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLI 117

Query: 111 AQIPGISMKIASRIMTELKGK 131
             +PGI  K++ R++ ELK K
Sbjct: 118 CSVPGIGQKMSERLILELKSK 138


>gi|289550593|ref|YP_003471497.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180125|gb|ADC87370.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 202

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 6/158 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++ QG+ Y I  P  +           T++    +R+D   L
Sbjct: 1   MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYNQAVTIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHI 153
           A +I+ +LKGK     A S  S+   D+S  +++  +I
Sbjct: 120 ARQIILDLKGKVNYTEASSNDSIHIDDISSTSQKDNYI 157


>gi|189218506|ref|YP_001939147.1| Holliday junction resolvasome, DNA-binding subunit
           [Methylacidiphilum infernorum V4]
 gi|189185364|gb|ACD82549.1| Holliday junction resolvasome, DNA-binding subunit
           [Methylacidiphilum infernorum V4]
          Length = 211

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      +++++V+G+ + ++C +     L  +    TL+    + ++++ L
Sbjct: 12  MISYLKGTLIYSLFPHIIVEVRGIGFEVFCSLSLFRNLPPLYSELTLYTHLEVSENRLEL 71

Query: 61  FGFLSDLDRQ--WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           FGF  DL+ Q  + +L++ V GVG R A+ +L+ +  +EL  ++   + +++++I GI  
Sbjct: 72  FGF-KDLEEQLTFRLLVEKVHGVGPRTALSILNVLPPSELKAAVGRADFRLLSKIKGIGE 130

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ ELK    +  +      + V               +A+ ALV LGY + +A 
Sbjct: 131 KTAHRLVVELKDSWATAEASSSSGTAIVGDRVFE---------DALRALVALGYKEPEAL 181

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +  V +K   + D   II+  L+  S
Sbjct: 182 KRLRRVREKHPQM-DLEGIIKECLKLAS 208


>gi|294811584|ref|ZP_06770227.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC
           27064]
 gi|326440227|ref|ZP_08214961.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC
           27064]
 gi|294324183|gb|EFG05826.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC
           27064]
          Length = 204

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     ++ V GV   ++C   TL+ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + + +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119

Query: 121 ASRIMTELKGK 131
           A +++ ELK +
Sbjct: 120 AQKLLLELKDR 130


>gi|254391315|ref|ZP_05006519.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705006|gb|EDY50818.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           clavuligerus ATCC 27064]
          Length = 253

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     ++ V GV   ++C   TL+ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + + +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119

Query: 121 ASRIMTELK 129
           A +++ ELK
Sbjct: 120 AQKLLLELK 128


>gi|253732298|ref|ZP_04866463.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724087|gb|EES92816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 200

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +     ++     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKQLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY +
Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169


>gi|182415003|ref|YP_001820069.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1]
 gi|229560110|sp|B1ZN17|RUVA_OPITP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|177842217|gb|ACB76469.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1]
          Length = 200

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +        +++V G  Y ++ P+ T   L   G    L      R+D   L
Sbjct: 1   MITSIQGTLVSATPLQAIVEVAGFGYEVHIPVTTAERLPAAGAAVKLHTLVIYREDSQTL 60

Query: 61  FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S  +R +F ++++ V GVG ++A+ ++SR+    L  +I + +   +A+ PGI  K
Sbjct: 61  YGFASPAERDFFRLMIEHVTGVGPKMALSIMSRLALPSLESAIRMGDVASLAKCPGIGKK 120

Query: 120 IASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            A R++ EL+      G A  L++  Q   +      AH         +A++ALV LGY 
Sbjct: 121 TAERLVVELRTKVGATGAAPGLAT--QPAAAASPGASAH--------RDAVAALVALGYR 170

Query: 174 QDQATTAV 181
              A  AV
Sbjct: 171 SADADEAV 178


>gi|330466911|ref|YP_004404654.1| Holliday junction DNA helicase RuvA [Verrucosispora maris
           AB-18-032]
 gi|328809882|gb|AEB44054.1| Holliday junction DNA helicase RuvA [Verrucosispora maris
           AB-18-032]
          Length = 200

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +I+V GV   + C   T++ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +  F LLQ+  GVG R+A  VL+  T   + ++I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKALFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELK 129
           A R++ EL+
Sbjct: 120 AERLVLELR 128


>gi|295102071|emb|CBK99616.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium
           prausnitzii L2-6]
          Length = 203

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V+I   GV Y   CP      L  +G+  T++   ++ ++ + L
Sbjct: 1   MIYSLTGKIIKKTLNAVVICCGGVGYYAQCPASVAGALPGVGNEATIYTVMNVTENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+  +  F LL SV GVGA+V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFASEEQQACFELLTSVSGVGAKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K ++       D+  V    +   +    A  AI+ALV+LGY Q +A  A
Sbjct: 121 AQRIVLELKDK-VAKGFAAGIDLENVAGAASDTAAA-QGAGQAIAALVSLGYSQSEAALA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V     K        +II+LALR+++
Sbjct: 179 V----SKIDGTLPVEEIIKLALRSMA 200


>gi|162447235|ref|YP_001620367.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A]
 gi|189045740|sp|A9NF61|RUVA_ACHLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161985342|gb|ABX80991.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A]
          Length = 186

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 75/134 (55%), Gaps = 3/134 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  GV Y++  P+       KIG+  T+    H+R+D  +L
Sbjct: 1   MYRYIKGIVTQINPQHIVVENNGVGYLVLSPV---PYQYKIGEETTVVTYLHVREDIFQL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +     F+ L SV G+G + AM +++     +++ +I   ++K + + PGI MK 
Sbjct: 58  YGFKDEETLNLFLKLISVSGIGPKSAMSIVAFDDTNKIIAAIETSDAKYLTKFPGIGMKS 117

Query: 121 ASRIMTELKGKAIS 134
           A +I+ +LKGK ++
Sbjct: 118 AQQIILDLKGKLVN 131


>gi|258648476|ref|ZP_05735945.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC
           51259]
 gi|260851236|gb|EEX71105.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC
           51259]
          Length = 197

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L      ++  GV Y +   + T + +    +   L+V   +R+D   L
Sbjct: 1   MIDYIKGQIGELTPTSCTLETCGVGYELLISLNTYTAIQDRKE-AKLYVYEVIREDAYLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F LL SV GVG + A  +LS  +  EL   I ++N K++  + GI  K 
Sbjct: 60  YGFSTKQERQLFTLLISVSGVGGQTAKVILSSFSPGELANIIQMENVKLLRGVKGIGPKA 119

Query: 121 ASRIMTELKGKAISLS--SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+ +LK K + +   + VQQ  +      A   ++        SAL  LG+    + 
Sbjct: 120 AQRIVLDLKDKVVGIEGGTTVQQGAANAVNANAVAEAV--------SALTTLGFPPAASQ 171

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
             V ++L++  N+  + QII+ AL+
Sbjct: 172 KCVAALLQENPNLPIE-QIIKQALK 195


>gi|297588495|ref|ZP_06947138.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia
           magna ATCC 53516]
 gi|297573868|gb|EFH92589.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia
           magna ATCC 53516]
          Length = 198

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 12/178 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHMRQDQI 58
           M   I G I  ++E+Y++++   + Y ++        +    ++   T FVE   R+D  
Sbjct: 1   MYSYIIGVITEVHENYIVLENNKIGYKVFITDFFRDNVSAFDEYKVYTEFVE---REDAS 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S  +R  F LL  V  +G + AM +LS +T  E   +II  + K++ Q PG+  
Sbjct: 58  ILYGFSSQKERDLFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           K ASRI+ ELK K       +++D     K         S +  A  AL+ LGY ++ 
Sbjct: 118 KTASRIILELKEK-------IEKDFVPSEKPVTKEVKKSSDSEFAREALLQLGYFKND 168


>gi|148244503|ref|YP_001219197.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326330|dbj|BAF61473.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 202

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MIGK+ G I       +L++V  + Y I C   ++S    +GD   L + TH+  +++  
Sbjct: 3   MIGKLSGTILEKNPPEILLEVDKIGYEILC---SMSSFYAMGDEEQLSLYTHLSIKENAH 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF+S  ++  F  L  + G+G +VA+ +LS +    L++ I   N  ++A+ PGI +
Sbjct: 60  ILYGFISKDEKTLFRELIRINGIGPKVALAILSHLDINSLIKVITDGNDTLLAKTPGIGI 119

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQA 177
           K A +++ ELK +   L       ++  N +  HI    +  I  A +AL  LG+ + + 
Sbjct: 120 KTAQKLIVELKDRLEKLK------LNNENHKNIHIKFKKNPNIKQASAALQALGF-KARE 172

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
           +  ++SV+K   N      +IR AL+
Sbjct: 173 SEKMLSVIK--DNSLSTKALIRQALQ 196


>gi|256847966|ref|ZP_05553410.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715026|gb|EEU30003.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis
           101-4-CHN]
          Length = 200

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I   + DY++I+V GV + +         L +  D   ++V   +R D I LFGF + 
Sbjct: 7   GTITEAHPDYLVIEVNGVGFRVQVANPYSYPLNE--DATKIYVYQAVRDDAISLFGFHNA 64

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +++ F  L +V G+G + A+ +L+      LVE+I   N   I + PGI  K ASRI+ 
Sbjct: 65  EEKRLFTKLLAVSGIGPKSALAILANPDHEGLVEAIANNNVSYITKFPGIGKKTASRIII 124

Query: 127 ELKGKAISL 135
           EL+ K  SL
Sbjct: 125 ELQDKVDSL 133


>gi|310287480|ref|YP_003938738.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17]
 gi|309251416|gb|ADO53164.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17]
          Length = 206

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +     +I+V GV Y +             G    +F    + QD + L
Sbjct: 2   MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +++ PG+  K 
Sbjct: 61  FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 120

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +I+ EL G+ I L  +  + D    +++          A   I  LV+LG+    A  
Sbjct: 121 AQKIILELAGR-IDLDQIRPEADGPSESRDPG--------ARQVIEGLVSLGWRPQTAEE 171

Query: 180 AV 181
           AV
Sbjct: 172 AV 173


>gi|196250113|ref|ZP_03148807.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16]
 gi|196210297|gb|EDY05062.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16]
          Length = 194

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 13/189 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +   Y++ID  G+ Y I+ P    +         T++   ++R+D   L
Sbjct: 1   MIEFIRGYVDYICPQYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +++ +LKGK    S     Q  + ++ E A           AI+AL  LGY + +   
Sbjct: 120 ARQMILDLKGKLTMFSMPTAPQPAASLSGELA----------EAIAALKALGYAERE-IE 168

Query: 180 AVVSVLKKE 188
            ++  L++E
Sbjct: 169 KIIPALREE 177


>gi|167847253|ref|ZP_02472761.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei B7210]
          Length = 162

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 21/178 (11%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L   G+   L  +  +R+D   L+GFL+  +R  F  L  + GVGAR+A+ VLS
Sbjct: 1   MSTFYNLPHTGEKVVLLTQLIVREDAHLLYGFLTPPERSTFRELLKITGVGARMALAVLS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  EL +++ LQ++  + ++PGI  K A R++         L   +  D+  +    A
Sbjct: 61  GMSVAELSQAVTLQDAARLTRVPGIGKKTAERLLL-------ELKGKLGADLGPL----A 109

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206
              S    A + ++ALV LGY + +A  A+       KN+      S+ I+L+L+A+S
Sbjct: 110 GAASPSDHATDILNALVALGYSEKEALAAI-------KNVPAGTGVSEGIKLSLKALS 160


>gi|256391548|ref|YP_003113112.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM
           44928]
 gi|256357774|gb|ACU71271.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM
           44928]
          Length = 208

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 21/216 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +++V GV  +++C   TL+ L  +G+   LF    +R+D + L
Sbjct: 1   MIAFVSGPVAAVTPTSAVVEVGGVGMLVHCGPGTLAAL-AVGEKAKLFTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK-VIAQIPGISMK 119
           +GF +D +R  F LLQ+  G+G +VA  +LS + A + + +I +   +  + Q+PGI  K
Sbjct: 60  YGFATDDERTVFELLQTASGIGPKVAQAMLS-VHAPDTLRTIFMTGDEAALTQVPGIGKK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAH----ICSMPSFAINAISALVNLGYGQD 175
            A R++ ELK +    +  V          QAH       + S+ +  + AL  LG+   
Sbjct: 119 GAQRLLLELKERLGPPTGAV--------PGQAHNGWSRAGLGSWRVQLLEALTGLGWTAR 170

Query: 176 QATTAVVSV--LKKEKNIADDS----QIIRLALRAI 205
           +A  AV +V  L  E+  A  +     +++ ALR +
Sbjct: 171 EADDAVSAVGPLAAEQEAAGQTVQLGPLLKAALRTM 206


>gi|329296286|ref|ZP_08253622.1| Holliday junction DNA helicase RuvA [Plautia stali symbiont]
          Length = 204

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+   V Y ++ P+     L  I     +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLIEAHCVGYEVHLPMTCFYELPDINQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-------FAINAISALVNLGYG 173
           A R++ E+K +   +             + A   + PS           A++ALV LGY 
Sbjct: 121 AERLVVEMKDRFKGMHG------DLFGGDSAFTLTTPSAQQDNNDAEAEAVAALVALGYK 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             +A+  V  V K +   AD   +IR ALRA
Sbjct: 175 PQEASRMVSKVGKPD---ADCETLIREALRA 202


>gi|254796929|ref|YP_003081766.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str.
           Illinois]
 gi|254590177|gb|ACT69539.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str.
           Illinois]
          Length = 193

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 108/205 (52%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +  L ++ +++DV GV Y ++   R +  L + G   +L++E +  ++  +L
Sbjct: 1   MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFSENINKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++   +L  V+G+  ++A+ +L+ +   EL+ +I  ++   + +I GI  K+
Sbjct: 60  YGFECKKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RI+TE     + L   +   +S  N    HI S       A+SALV LG+    +   
Sbjct: 119 VKRIITETYEDFLKLDLQLPGTVSSTN---IHIVS------EAVSALVKLGFQHKPSHKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ ++  +  I + +++I LAL+ +
Sbjct: 170 VMEIMTNQPAI-EIAELITLALKML 193


>gi|308234389|ref|ZP_07665126.1| Holliday junction DNA helicase subunit RuvA [Atopobium vaginae DSM
           15829]
 gi|328944205|ref|ZP_08241669.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium
           vaginae DSM 15829]
 gi|327491124|gb|EGF22899.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium
           vaginae DSM 15829]
          Length = 214

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 14/198 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-TLFVETHMRQDQIR 59
           MI ++ G +  ++ + V++DVQGV Y +     T + L   G    TL V   ++++ + 
Sbjct: 1   MIVQLTGTLVEVFPNSVVLDVQGVGYELGISANTAANLPACGQTAVTLLVRMIVKENAME 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L  + GVG ++A+ VLS  + ++L    + ++   +AQ+PG+  K
Sbjct: 61  LYGFSSRQERNAFDRLIDISGVGPKLALAVLSTYSLSDLATIALSEDVTRMAQVPGVGKK 120

Query: 120 IASRIMTEL-----KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGY 172
            A R++ EL     K   + + +  +Q  S   +EQA     P  ++  +A SAL+ +G+
Sbjct: 121 KAQRLLIELADVFAKDAELRILASAEQKTSGA-REQA-----PQHSVLDDAQSALLAMGF 174

Query: 173 GQDQATTAVVSVLKKEKN 190
              +   A+    KKE N
Sbjct: 175 TPQEVELALKPYDKKECN 192


>gi|224283112|ref|ZP_03646434.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140261|ref|ZP_07802454.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132771|gb|EFR50388.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 205

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +     +I+V GV Y +             G    +F    + QD + L
Sbjct: 1   MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +++ PG+  K 
Sbjct: 60  FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +I+ EL G+ I L  +  + D    +++          A   I  LV+LG+    A  
Sbjct: 120 AQKIILELAGR-IDLDQIRPEADGPSESRDPG--------AKQVIEGLVSLGWRPQTAEE 170

Query: 180 AV 181
           AV
Sbjct: 171 AV 172


>gi|16079826|ref|NP_390652.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310713|ref|ZP_03592560.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315037|ref|ZP_03596842.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319958|ref|ZP_03601252.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324239|ref|ZP_03605533.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312303|ref|YP_004204590.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5]
 gi|3183558|sp|O05392|RUVA_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2635239|emb|CAB14734.1| Holliday junction DNA helicase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|6977805|emb|CAB75330.1| RuvA protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485185|dbj|BAI86260.1| Holliday junction DNA helicase motor protein [Bacillus subtilis
           subsp. natto BEST195]
 gi|320018577|gb|ADV93563.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5]
          Length = 201

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P      + K     T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPN---PFIYKERSQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L       ++++I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +I+ +LKGK   L+ VV + +  +  ++E+    +  +    A+ AL  LGY + +  
Sbjct: 118 ARQIILDLKGK---LADVVPEMIENLFNHEERLEKQTAETALEEALEALRVLGYAEKE-I 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V+  LK+E  +  D Q ++ AL+ +
Sbjct: 174 KKVLPHLKEEIGLTTD-QYVKKALQKL 199


>gi|237755451|ref|ZP_04584075.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692383|gb|EEP61367.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 179

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 26/144 (18%)

Query: 53  MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--I 110
           +RQ+ ++L GF+S+ +R  F+ L  + GVG + A+ ++S  +  E +E  I++N  V  +
Sbjct: 47  VRQEDVKLLGFVSEEERDLFLKLIQIHGVGVKHALSIISNFSVEEFIE--IIENGDVDKL 104

Query: 111 AQIPGISMKIASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
            +I GI  K A RI+ ELKGK   S S  + Q                      +SALVN
Sbjct: 105 TEIQGIGNKTAQRIIVELKGKIEFSESDELNQ---------------------LVSALVN 143

Query: 170 LGYGQDQATTAVVSVLKKEKNIAD 193
           LGY + ++      VLK+ K+I +
Sbjct: 144 LGYDKKESVKVAKKVLKETKDIKE 167


>gi|282916910|ref|ZP_06324668.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770716|ref|ZP_06343608.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319397|gb|EFB49749.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460863|gb|EFC07953.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus H19]
          Length = 200

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 5/195 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELSKV 175

Query: 181 VVSVLKKEKNIADDS 195
             ++ K + +  D++
Sbjct: 176 EKTLNKNKYDSVDEA 190


>gi|319400968|gb|EFV89187.1| holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           FRI909]
          Length = 200

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57
           M   IKG +  L+  +V+++  G+ Y I  P   R    L K +  + +L V    R+D 
Sbjct: 1   MYAYIKGTLSQLFPTHVVVETCGIGYEIQTPNSYRFQKYLEKEVQIYTSLIV----REDA 56

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + Q PGI 
Sbjct: 57  QLLYGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDM--SCVN-KEQAHICSMPSFAINAISALVNLGYGQ 174
            K A +I+ +LKGK ++++     D+  + VN  EQ  I S       A+ AL  LGY +
Sbjct: 117 KKTARQIVLDLKGK-VTITEENSDDLLQTQVNGNEQNQIIS------EALLALQALGYSK 169

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            + +    S+ K   N  D++  +++ L+ +
Sbjct: 170 RELSKVEKSLNKHNVNSVDEA--VKIGLQTL 198


>gi|311064395|ref|YP_003971120.1| holliday junction DNA helicase RuvA [Bifidobacterium bifidum
           PRL2010]
 gi|310866714|gb|ADP36083.1| RuvA Holliday junction DNA helicase [Bifidobacterium bifidum
           PRL2010]
          Length = 205

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +     +I+V GV Y +             G    +F    + QD + L
Sbjct: 1   MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +++ PG+  K 
Sbjct: 60  FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +I+ EL G+ I L  +  + D    +++          A   I  LV+LG+    A  
Sbjct: 120 AQKIILELAGR-IDLDQIRPEADGPSESRDPG--------ARQVIEGLVSLGWRPQTAEE 170

Query: 180 AV 181
           AV
Sbjct: 171 AV 172


>gi|138896159|ref|YP_001126612.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermodenitrificans NG80-2]
 gi|166230554|sp|A4IRB3|RUVA_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134267672|gb|ABO67867.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermodenitrificans NG80-2]
          Length = 194

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 11/188 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    +         T++   ++R+D   L
Sbjct: 1   MIEFIRGYVDYICPEYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK    S      M    +  A   S+      AI+AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTMFS------MPTAPRPAA---SLSGELAEAIAALKALGYAERE-IEK 169

Query: 181 VVSVLKKE 188
           ++  L++E
Sbjct: 170 IIPALREE 177


>gi|255533713|ref|YP_003094085.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366]
 gi|255346697|gb|ACU06023.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366]
          Length = 194

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 15/190 (7%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           Y++++  GV Y +   + T S L    + C ++   H+++D   L+GF  + +R+ F+ L
Sbjct: 16  YIVVEAGGVGYHLNISLNTYSSLANT-ERCKVYTWLHVKEDAHTLYGFADEGERRLFLHL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL--KGKAI 133
            SV G+G      +LS IT  E+  +I+  +  +I +I GI  K A R++ EL  K K  
Sbjct: 75  ISVSGIGPNTGRMMLSSITPVEIQTAIVNADLALIQRIKGIGAKSAQRLVLELQDKLKKE 134

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
              S++   ++   +E+            A+SAL+ LG+ +  +  A+ + +K       
Sbjct: 135 GSGSLIAAPLNNTVREE------------ALSALMMLGFAKPASEKAIDNAVKNGGQDLS 182

Query: 194 DSQIIRLALR 203
             Q+I++AL+
Sbjct: 183 VEQMIKIALK 192


>gi|188997620|ref|YP_001931871.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932687|gb|ACD67317.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 179

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 24/143 (16%)

Query: 53  MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--I 110
           +RQ+ +RL GF+S+ +R  F+ L  + GVG + A+ ++S  +  E +E  I++N  V  +
Sbjct: 47  VRQEDVRLLGFVSEEERDLFLKLIQIHGVGVKHALNIISNFSVEEFIE--IMENGDVDKL 104

Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
            +I GI  K A RI+ ELKGK I  +            E   +  +       +SALVNL
Sbjct: 105 TEIQGIGNKTAQRIIVELKGK-IEFN------------ESDELSQL-------VSALVNL 144

Query: 171 GYGQDQATTAVVSVLKKEKNIAD 193
           GY + ++      V+K+ K+I +
Sbjct: 145 GYDKKESVNVAKKVIKETKDIKE 167


>gi|291165807|gb|EFE27855.1| holliday junction DNA helicase RuvA [Filifactor alocis ATCC 35896]
          Length = 198

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 28/215 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G IE L  D +L+   GV Y I     T+    +  +   L+ +  +R+D I L
Sbjct: 1   MIGLLYGEIEELSLDSILLVCSGVGYEIQVSQNTMEHCKQHSNI-RLYTKMIVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +++ F  L SV  +G +V + +LS     ++   I+  N + ++++ G+  K 
Sbjct: 60  IGFFEKSEKELFEQLTSVSKIGPKVGLSILSTYQVDQIKSYIVTANIEKLSKVSGVGKKT 119

Query: 121 ASRIMTELKGK---------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           A RI+ ELK K         AI ++S + Q                    +AI ALV+LG
Sbjct: 120 AERIVLELKDKISHFEIDNDAIEIASPINQTED-----------------DAIEALVSLG 162

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++++  AV  V K++       ++I LAL  +S
Sbjct: 163 FSKNESYDAVQEV-KQQYTAQSLDELIPLALSKLS 196


>gi|258424067|ref|ZP_05686949.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635]
 gi|294848671|ref|ZP_06789417.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754]
 gi|257845688|gb|EEV69720.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635]
 gi|294824697|gb|EFG41120.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754]
          Length = 203

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 4   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 63  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY +
Sbjct: 123 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 172


>gi|226226039|ref|YP_002760145.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27]
 gi|259495644|sp|C1A615|RUVA_GEMAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226089230|dbj|BAH37675.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27]
          Length = 197

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI +++G I     D V ++   GV Y    P+     L   G   TL     +R+D   
Sbjct: 1   MISQVRGTIMHRELDRVEIMTASGVAYECLIPLSVFESLPSEGQTVTLHTHLVVREDAWH 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  L   +GVG  +A+G+LS +T   +V ++  ++   + ++P +  K
Sbjct: 61  LYGFAHAYERAVFQKLLHAKGVGPALALGILSALTPDRVVRALHEKDVLTLMRVPRVGRK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +L  K           +  V    A   +      +A+ AL+ LGY Q +A  
Sbjct: 121 KAEQIILDLADK-----------IDAVGPAPATGTAPSPLGDDAVRALIALGYNQTEADR 169

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AV +V++      D S ++R AL  ++ 
Sbjct: 170 AVRAVVESGAP-KDVSSLVRGALSRLTA 196


>gi|57650523|ref|YP_186536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751240|ref|YP_416981.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus RF122]
 gi|87160146|ref|YP_494293.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195453|ref|YP_500257.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221756|ref|YP_001332578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509868|ref|YP_001575527.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253733107|ref|ZP_04867272.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258450532|ref|ZP_05698594.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948]
 gi|262048631|ref|ZP_06021514.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|262051292|ref|ZP_06023516.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|282920191|ref|ZP_06327916.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765]
 gi|284024698|ref|ZP_06379096.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 132]
 gi|304380761|ref|ZP_07363429.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|71153735|sp|Q5HFC1|RUVA_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123098028|sp|Q2FXT3|RUVA_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123740965|sp|Q2YT88|RUVA_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123763287|sp|Q2FG85|RUVA_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172048928|sp|A6QHI4|RUVA_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045775|sp|A8Z2H0|RUVA_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57284709|gb|AAW36803.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656771|emb|CAI81200.1| Holliday junction DNA helicase [Staphylococcus aureus RF122]
 gi|87126120|gb|ABD20634.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203011|gb|ABD30821.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374556|dbj|BAF67816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368677|gb|ABX29648.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728863|gb|EES97592.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257861690|gb|EEV84489.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948]
 gi|259160929|gb|EEW45949.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|259163278|gb|EEW47837.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|282594539|gb|EFB99524.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765]
 gi|283470918|emb|CAQ50129.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|298694921|gb|ADI98143.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333315|gb|ADL23508.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|304340698|gb|EFM06630.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315198657|gb|EFU28985.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140471|gb|EFW32325.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144010|gb|EFW35779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323440805|gb|EGA98514.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O11]
 gi|323442846|gb|EGB00471.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O46]
 gi|329314316|gb|AEB88729.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329728425|gb|EGG64862.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733154|gb|EGG69491.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 200

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY +
Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169


>gi|123968451|ref|YP_001009309.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. AS9601]
 gi|166230584|sp|A2BQZ1|RUVA_PROMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123198561|gb|ABM70202.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. AS9601]
          Length = 225

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 83/141 (58%), Gaps = 13/141 (9%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVE 50
           MI  I G++  L++     +VLI+ QG+ Y I      +  ++T     K     TL+++
Sbjct: 1   MISWINGDLVDLWQTNQKSFVLINCQGLGYEIQILESFFLKLKTNQISTK---NITLWIK 57

Query: 51  THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110
              ++D   LFGF S   + +F+ + S++GVG+++ +G+L++ + +E++ +I  Q+ K+I
Sbjct: 58  HIKKEDSDLLFGFTSKDQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLI 117

Query: 111 AQIPGISMKIASRIMTELKGK 131
             +PGI  K++ R++ ELK K
Sbjct: 118 CSVPGIGQKMSERLILELKSK 138


>gi|34540592|ref|NP_905071.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83]
 gi|44888375|sp|Q7MW36|RUVA_PORGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34396905|gb|AAQ65970.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83]
          Length = 202

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  +KG I GL    ++I+  GV Y +   + T S   GK      +++   +R+D   
Sbjct: 1   MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGL--IWITQLIREDAHL 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F  L SV GVG   A  +LS     EL   I    +  +  + GI +K
Sbjct: 59  LYGFSTKEERTLFGQLTSVSGVGPTTAQLILSSYAPQELAALITTGQADALKAVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK I L +   + +S          +  +    AISAL  LG+       
Sbjct: 119 TAQRIIVDLKGK-IQLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV S+L ++ ++A +  II+ ALR
Sbjct: 178 AVKSILSEDSSLAVE-DIIKRALR 200


>gi|217077241|ref|YP_002334959.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B]
 gi|226725448|sp|B7IHQ4|RUVA_THEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|217037096|gb|ACJ75618.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B]
          Length = 189

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 32/213 (15%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-------CTLFVETHM 53
           MI  + G +E +    V ++V  + Y I         +G  GDF         ++ +  +
Sbjct: 1   MIHALNGKVESIENGKVYVNVNDLIYEI--------IVGDTGDFEEYINRNVKIYTKMVV 52

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
             D I L+GFL  +  + F  L  V  +G + A+ ++S  +   +V +II ++ K ++ +
Sbjct: 53  NDDGISLYGFLEVIKLKLFEKLIGVNKLGPKSALKIISSNSVESVVSAIINEDVKALSSL 112

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K A RI+ ELK       ++ + D+S   K++          + AI ALV LG+ 
Sbjct: 113 PGIGPKTAERIVLELK------DTIKELDVSINEKDRK--------VLEAIEALVTLGFN 158

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           ++QA  AV  V  K+  + D   II+ ALR +S
Sbjct: 159 RNQAKKAVNKVAAKDDKLDD---IIKKALRFLS 188


>gi|297571393|ref|YP_003697167.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931740|gb|ADH92548.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 199

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 12/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+V GV   +     TLS L ++G    L     +R+D + L
Sbjct: 1   MIASLRGIVSAIGITSAVIEVGGVGMSVQATPTTLSTL-RMGAEAHLMTSLIVREDSLTL 59

Query: 61  FGFLSDLD-RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF  D+D R  F +L  + G+G R A+ VL+ +T   L +++  +N   + ++ GI  K
Sbjct: 60  YGF-GDIDERDVFDILTGISGIGPRTALAVLAVLTPDALRDAVATKNEAALTRVSGIGKK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ EL  K       +           A    +P+ A + + ALVNLG+ + +A  
Sbjct: 119 GAQRMILELGSK-------LGPTRGSATASGADTRVVPADA-DVLEALVNLGWNEREAAP 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV     K    A  ++++R AL+
Sbjct: 171 AVHEATNKMPG-ASVAELLRAALQ 193


>gi|218508888|ref|ZP_03506766.1| Holliday junction DNA helicase RuvA [Rhizobium etli Brasil 5]
          Length = 55

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
          MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+
Sbjct: 1  MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVRE 55


>gi|22298075|ref|NP_681322.1| Holliday junction DNA helicase motor protein [Thermosynechococcus
           elongatus BP-1]
 gi|34222868|sp|Q8DLG1|RUVA_THEEB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|22294253|dbj|BAC08084.1| Holliday junction DNA helicase [Thermosynechococcus elongatus BP-1]
          Length = 210

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 12/202 (5%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           EG +   ++++V GV Y +      L       +   +F    +R+DQ+ L+GF S  +R
Sbjct: 15  EGGHRCALILEVNGVGYRLLVTSHLLQQYPPRPEVVQIFTHLSIREDQMLLYGFASAAER 74

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F+ L  V GVG ++A+ +L  +   ELV++I+  N++ +++ PG+  K A RI  ELK
Sbjct: 75  DLFLRLIRVNGVGPQMALSLLDTLPLPELVQAIVSGNTRRLSRAPGVGHKTAERIALELK 134

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--AISALVNLGYGQDQATTAVVSVLKK 187
                  S  +Q+M            +PS A+       L+ LGY   +   A+ +V + 
Sbjct: 135 AAL----SAWRQEMGFTTAS----SGLPSEAVREELELTLLALGYSDREIAAALTAVGQT 186

Query: 188 E--KNIADDSQIIRLALRAISC 207
               N +D    +R A+  +S 
Sbjct: 187 TTLPNNSDPEAWLREAIAWLSA 208


>gi|242242914|ref|ZP_04797359.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
 gi|242233629|gb|EES35941.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
          Length = 200

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57
           M   IKG +  L+  +V+++  G+ Y I  P   R    L K +  + +L V    R+D 
Sbjct: 1   MYAYIKGTLSQLFPTHVVVETCGIGYEIQTPNSYRFQKYLEKEVQIYTSLIV----REDA 56

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + Q PGI 
Sbjct: 57  QLLYGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPYEVKLAIENENDAYLTQFPGIG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDM--SCVN-KEQAHICSMPSFAINAISALVNLGYGQ 174
            K A +I+ +LKGK ++++     D+  + VN  EQ  I S       A+ AL  LGY +
Sbjct: 117 KKTARQIVLDLKGK-VTITEENSDDLLQTQVNGNEQNQIIS------EALLALQALGYSK 169

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            + +    S+ K   N  D++  +++ L+ +
Sbjct: 170 RELSKVEKSLNKHNVNSVDEA--VKIGLQTL 198


>gi|300787173|ref|YP_003767464.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei
           U32]
 gi|299796687|gb|ADJ47062.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei
           U32]
          Length = 198

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 10/185 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++V GV + +     TL+ L + G+   L     +R+D + L
Sbjct: 1   MISSVRGEVLIVGLDHVVVEVGGVGFAVQATPATLATL-RRGEEARLHTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     R+ F LLQ+V G+G R+A+  L+ +   +L  +++  N  V+  +PGI  K 
Sbjct: 60  FGFADADARELFGLLQTVSGIGPRLALATLAVLDPGKLRAALVEGNITVLTSVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  EL+ K  +L+     D+  V    A            + AL  LG+   QA  A
Sbjct: 120 AERLTLELRDKVTALAGT--GDVPAVTAPGA-------LRAEVVEALAGLGFPAKQAEQA 170

Query: 181 VVSVL 185
           V  VL
Sbjct: 171 VDKVL 175


>gi|188994697|ref|YP_001928949.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis ATCC
           33277]
 gi|229560115|sp|B2RJ07|RUVA_PORG3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188594377|dbj|BAG33352.1| probable Holliday junction DNA helicase RuvA [Porphyromonas
           gingivalis ATCC 33277]
          Length = 202

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  +KG I GL    ++I+  GV Y +   + T S   GK      +++   +R+D   
Sbjct: 1   MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGL--IWITQLIREDAHL 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F  L SV GVG   A  +LS     EL   I    +  +  + GI +K
Sbjct: 59  LYGFSTKEERTLFGQLTSVSGVGPTTARLILSSYAPQELAALITTGQADALKAVKGIGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK I L +   + +S          +  +    AISAL  LG+       
Sbjct: 119 TAQRIIVDLKGK-IQLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV S+L ++ ++A +  II+ ALR
Sbjct: 178 AVKSILSEDSSLAVE-DIIKRALR 200


>gi|312793294|ref|YP_004026217.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180434|gb|ADQ40604.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 197

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   V   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGIIQEVFSNYVILNYNNVYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V     +   KE+     +   ++    AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVA----ATTGKEEKTYEKLEEISL----ALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S    E ++ D    I+LAL+ +S
Sbjct: 171 QVLSSEDFSELSLEDG---IKLALKKLS 195


>gi|253581541|ref|ZP_04858766.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC
           27725]
 gi|251836611|gb|EES65146.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC
           27725]
          Length = 198

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 90/182 (49%), Gaps = 7/182 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +E    DY+ +DV GV Y +   +RT   +   G+   L++  ++++D  +L
Sbjct: 1   MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFIN-AGEEVKLYIYNYIKEDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R  F +L  V+G+G  +A+ V+S      + + +   +   + ++P +  K 
Sbjct: 60  IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYNNLKRVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + +++ +LK K  +L ++    +   N + A    +       ISAL  LGY + +  T 
Sbjct: 120 SQQLILDLKSKLKTLDAL---SIDTRNDDAARHLMIEE---ELISALEGLGYSKKEINTL 173

Query: 181 VV 182
           + 
Sbjct: 174 IT 175


>gi|222529107|ref|YP_002572989.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254766939|sp|B9MRB2|RUVA_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222455954|gb|ACM60216.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 197

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGIIQEVFSNYVILNYNNLYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVAKLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDM---SCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           K ASRI+ ELK         ++++    S   KE+     +   ++    AL++LGY  D
Sbjct: 119 KTASRIILELK-------ETLKKEFKVASTSGKEEKTYEKLEEISL----ALLSLGYDID 167

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    + S    E ++ D    I+LAL+ +S
Sbjct: 168 EVNQVLSSEDFSELSLEDG---IKLALKKLS 195


>gi|302344655|ref|YP_003809184.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM
           2075]
 gi|301641268|gb|ADK86590.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM
           2075]
          Length = 193

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     D+V++DV GV Y ++  +     L + G+  +L   T +R D I L
Sbjct: 1   MIARLRGQLAARRPDHVVVDVGGVGYRVFVSLGAFCRLPQSGEI-SLLTHTIVRDDAIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ + + F LL SV GVG ++A+ +LS +   EL  +I   ++  +A+ PG+  K 
Sbjct: 60  YGFINEQEWEAFRLLVSVAGVGPKLALAILSGLEVGELWAAIRAGDAARLAKTPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L G+              V ++ A   +  + A +A SAL NLGY + +A  A
Sbjct: 120 AGRLVVDLAGRL------------PVGEQPAAAVAPGTAADDAQSALCNLGYPEAKAKKA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L    + A    ++RLAL+ ++
Sbjct: 168 VDKALAVAGDGAALEDLLRLALKELA 193


>gi|62147831|emb|CAH63577.1| putative holliday junction DNA helicase RuvA [Chlamydophila abortus
           S26/3]
          Length = 222

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 16  MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 75

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 76  LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 135

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q ++     +      PS     I AL  LGY +  A  
Sbjct: 136 TAEKLMVDLKQKLADLLPLDAQILASWEPAK------PSCMEEGIQALAALGYPKSSAER 189

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +   + +  + A  ++I+ +AL+
Sbjct: 190 MIAEAMSELPDHASVAEILPIALK 213


>gi|28572651|ref|NP_789431.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27]
 gi|28410783|emb|CAD67169.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27]
          Length = 174

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 100/186 (53%), Gaps = 15/186 (8%)

Query: 21  VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           + G+ +++  P    S   ++     L+    +R+D + L+GF S L+   F  L ++ G
Sbjct: 1   MHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFEQLITISG 57

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           VG RVA+ +LS +T  E+  +++  + K + ++ G+  K+A  I+ +L GK   L+SV  
Sbjct: 58  VGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLAGTIVLQLAGK---LTSV-- 112

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
                 N++Q         +   + AL+ LG+ + ++  AV SVL+K++++    +I+R 
Sbjct: 113 ---PLENRKQEQAVDR---SAEIVQALIGLGWQRQESAAAVESVLEKDQSLT-MPEILRN 165

Query: 201 ALRAIS 206
           ALR ++
Sbjct: 166 ALRYLA 171


>gi|227495489|ref|ZP_03925805.1| possible crossover junction endodeoxyribonuclease [Actinomyces
           coleocanis DSM 15436]
 gi|226831036|gb|EEH63419.1| possible crossover junction endodeoxyribonuclease [Actinomyces
           coleocanis DSM 15436]
          Length = 195

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 15/202 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI   +G ++ +   ++++   G    I   + T + + + G+   L+    +R+D + L
Sbjct: 1   MISFFQGEVQAIKPGHLVLVNGGFGLSIQVTVGTANQV-RHGELVGLYTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F +LQ+V  +G R A+  L  +T  EL +++I  + K + +IPGI  K 
Sbjct: 60  YGFLTEDERDTFNVLQTVSKIGPRTALQALEALTPDELRQAVISSDEKTLQRIPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K  + +  V+   +    E              I+ LV+LGY +  A  A
Sbjct: 120 AQRMLIEIGDKLGTPTGNVKLGTTVSVAE-----------TEVIAGLVSLGYSEVSAQAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V      + N    S+++R AL
Sbjct: 169 VEPFQGSDMNT---SEMLRAAL 187


>gi|120403560|ref|YP_953389.1| Holliday junction DNA helicase RuvA [Mycobacterium vanbaalenii
           PYR-1]
 gi|166230573|sp|A1T883|RUVA_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119956378|gb|ABM13383.1| DNA recombination protein RuvA, domain I [Mycobacterium vanbaalenii
           PYR-1]
          Length = 195

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIAAVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGAEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L  V G+G  +A+G L+      L ++I   +   + +IP +  K 
Sbjct: 60  YGFADSDARNLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDVTALTRIPKVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  ++  L+ K  + +S      + V     H    P      + ALV LG+ Q QA  A
Sbjct: 120 AELLVLTLRDKVGTSTS------AGVASAGGHGIRGP-----VVEALVGLGFAQKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
              VL  E   A  S  +R AL
Sbjct: 169 TDKVLANEPE-ATTSSALRAAL 189


>gi|325283106|ref|YP_004255647.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           proteolyticus MRP]
 gi|324314915|gb|ADY26030.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           proteolyticus MRP]
          Length = 196

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     ++   G+ Y ++CP  TL+ L K G+   L     +R+D   L
Sbjct: 1   MIVYLSGTVREVRTSSAVLQTGGLGYEVFCPQSTLARL-KPGEAAELHTRFVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF      Q F L+  V GVG ++ + +LS +  + L + I+  ++K+++ + G+  K 
Sbjct: 60  FGFHDTDSAQLFDLVTGVSGVGPKLGLALLSAMPVSTLAQGILDGDAKLLSSVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K       V   ++  +     + ++ +   +AI AL+ LG+ + Q  T 
Sbjct: 120 AERLILEVQSK-------VPAHLAAPSGGSKPV-TVTTAGADAIDALMALGFREAQVRTV 171

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  +L      + D+ +IR  L
Sbjct: 172 VAGLLADNPEQSADT-LIRKGL 192


>gi|150026160|ref|YP_001296986.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum
           JIP02/86]
 gi|166230550|sp|A6H1G0|RUVA_FLAPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149772701|emb|CAL44184.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum
           JIP02/86]
          Length = 193

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 12/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +       V+ID  GV Y +   + T   L    DF  LF    +++D   L
Sbjct: 1   MIAHIQGKLVEKSPTEVVIDCNGVGYHVNISLHTYGLL-PTTDFVKLFTHLIIKEDSHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL SV G+GA +A  +LS I   +++ +I   +   I  I GI +K 
Sbjct: 60  YGFAEKSEKEIFKLLISVSGIGANIARTMLSSIEPKQIINAIGSGDVGTIQSIKGIGVKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R + +LK K + L  + Q  +S  N  +            A+SAL  LG+ +  A   
Sbjct: 120 AQRTIIDLKEKVLKLYDLDQVSISQSNTNKD----------EALSALEVLGFIRKSAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++    + A    II+ AL+
Sbjct: 170 VEKIVATMPD-ATVETIIKQALK 191


>gi|196232552|ref|ZP_03131404.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus
           Ellin428]
 gi|196223314|gb|EDY17832.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus
           Ellin428]
          Length = 201

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 9/180 (5%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL-QSVQGVGAR 84
           Y +  P+ +   L  +G    +     +R+D   L+GF+++ +R  F LL   V G+G +
Sbjct: 26  YHVQIPLSSYDKLPAVGASIKILTHLAIREDAHVLYGFMTNAERDLFRLLVTHVSGIGPK 85

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-AISLSSVVQQDM 143
            A+ VLS  T T    +++  ++ ++A+  GI  K A RI+ ELK K  I+ +       
Sbjct: 86  TALDVLSGTTVTNFKAAVVAGDAGLLAKTKGIGKKTAERIIVELKDKVGIAAAWEAASAS 145

Query: 144 SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
                E+A +        +A+  L+ LGY Q  A  AV  V +K         ++R AL+
Sbjct: 146 HAPTPEEAKVT-------DAVLGLIALGYKQVDAHKAVKQVQEKGGPAMTTEDLVRQALK 198


>gi|302533404|ref|ZP_07285746.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C]
 gi|302442299|gb|EFL14115.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C]
          Length = 209

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV   + C   T++ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGQVAALAPTLAVIEVGGVGMAVQCTPNTIAGL-RVGEPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG RVA  +L   T   L  +    ++K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRVAQAMLGVHTPDALRVAFAAGDAKALTAVPGIGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELKGK  +   V     +   +          +     +AL+ LGY    A  A
Sbjct: 120 AQKLLLELKGKLGAPGGV-----AVGAQRAPAAAGPAPWTEQLTAALIGLGYASRDAEEA 174

Query: 181 VVSVLKK-EKNIADD-----SQIIRLALRAIS 206
           V +V  + E  IA        Q++R AL++++
Sbjct: 175 VSAVTPQAEAAIASGGSAPVPQLLRAALQSLN 206


>gi|281355312|ref|ZP_06241806.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC
           BAA-548]
 gi|281318192|gb|EFB02212.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC
           BAA-548]
          Length = 203

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           +IDV GV Y    P+ T   L + G+   L + T +R+D I LFGF +  +++ F  L +
Sbjct: 18  IIDVGGVGYEALIPLSTFDKLPQPGNKVELHIFTQVREDAITLFGFATPEEKKLFQQLIN 77

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V G+G ++A+ VLS +  +    +I   + K +++I G+  + A R++ EL+ K   L S
Sbjct: 78  VSGIGGKIALSVLSSMPVSGFCSAIASGDIKSLSRISGVGKRTAERMVVELRDK---LGS 134

Query: 138 VVQQDMSCVNKEQA 151
           V    +   + EQ 
Sbjct: 135 VAGGSVFVPDAEQG 148


>gi|161501897|ref|YP_219549.2| Holliday junction DNA helicase motor protein [Chlamydophila abortus
           S26/3]
 gi|90134722|sp|Q5L6Z3|RUVA_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 207

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 1   MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 61  LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q ++     +      PS     I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLADLLPLDAQILASWEPAK------PSCMEEGIQALAALGYPKSSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +   + +  + A  ++I+ +AL+
Sbjct: 175 MIAEAMSELPDHASVAEILPIALK 198


>gi|7766817|pdb|1D8L|A Chain A, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region
           Lacking Domain Iii
 gi|7766818|pdb|1D8L|B Chain B, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region
           Lacking Domain Iii
          Length = 149

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 71/131 (54%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGK 131
           A R++ E+K +
Sbjct: 121 AERLIVEMKDR 131


>gi|327439540|dbj|BAK15905.1| holliday junction resolvasome, DNA-binding subunit [Solibacillus
           silvestris StLB046]
          Length = 251

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 94/188 (50%), Gaps = 26/188 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56
           M   +KG +  +  +Y++++ QG+ +++Y P     RT +   +I      +V   +R+D
Sbjct: 46  MYDYLKGQVTRVTPEYIVLEQQGIGWMLYTPNPFAFRTSASEQQI------YVSLQVRED 99

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S   R+ F  L  V G+G + A+ +L+    T ++++I +++   + + PG+
Sbjct: 100 AQNLYGFNSLEQRELFKKLIQVSGIGPKGALAILASGNPTSVIQAIEMEDEAFLIRFPGV 159

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--------AISALV 168
             K A +++ +LKGK   L   V+  +     E      +P F +N        A+ ALV
Sbjct: 160 GKKTARQMILDLKGKLDMLLDHVE--LPSAENE------LPLFGVNPNEHELQEAMLALV 211

Query: 169 NLGYGQDQ 176
            LGY + +
Sbjct: 212 ALGYSEKE 219


>gi|310658621|ref|YP_003936342.1| FuvABC resolvasome regulatory subunit [Clostridium sticklandii DSM
           519]
 gi|308825399|emb|CBH21437.1| component of RuvABC resolvasome, regulatory subunit [Clostridium
           sticklandii]
          Length = 199

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 101/196 (51%), Gaps = 13/196 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG +E    D ++++  G+ Y I   + T+  +  IG+   +  +  +R+D I+L
Sbjct: 1   MLNYIKGILEEKAVDKIVVENNGIGYEILTSLNTIEEIN-IGEKIKIHTKLLVREDDIQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +   F LL SV  +G ++A+  LS   + ++   I+  +   + +IPG+  K 
Sbjct: 60  VGFTSKEELSIFNLLTSVSKIGPKLALSSLSVYKSEKIKLMIVESDINSLVKIPGMGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +  V   D+   ++ Q +I         AI ALV+LG+ + ++   
Sbjct: 120 AERVILELKDK---IGVVYFTDLESNSEPQLNIGHQ------AIEALVSLGFSKKESEDV 170

Query: 181 VVSVLKKEKNIADDSQ 196
           V  ++   K++ +D++
Sbjct: 171 VKKII---KSVGNDTE 183


>gi|15924632|ref|NP_372166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927222|ref|NP_374755.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283321|ref|NP_646409.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486475|ref|YP_043696.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148268122|ref|YP_001247065.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394190|ref|YP_001316865.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979960|ref|YP_001442219.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253317207|ref|ZP_04840420.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006427|ref|ZP_05145028.2| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258453755|ref|ZP_05701730.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937]
 gi|269203267|ref|YP_003282536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893146|ref|ZP_06301380.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117]
 gi|282928277|ref|ZP_06335882.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102]
 gi|296275927|ref|ZP_06858434.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207637|ref|ZP_06924072.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911720|ref|ZP_07129163.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|54039574|sp|P66749|RUVA_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54039575|sp|P66750|RUVA_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042203|sp|P66748|RUVA_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56749510|sp|Q6G8S7|RUVA_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200268|sp|A7X358|RUVA_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045773|sp|A6U2B0|RUVA_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045774|sp|A5ITG6|RUVA_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13701440|dbj|BAB42734.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247414|dbj|BAB57804.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204761|dbj|BAB95457.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244918|emb|CAG43379.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147741191|gb|ABQ49489.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946642|gb|ABR52578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722095|dbj|BAF78512.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257864075|gb|EEV86828.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937]
 gi|262075557|gb|ACY11530.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590084|gb|EFB95166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102]
 gi|282764464|gb|EFC04590.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117]
 gi|285817324|gb|ADC37811.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus
           04-02981]
 gi|296887654|gb|EFH26552.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300885966|gb|EFK81168.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|312830028|emb|CBX34870.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129927|gb|EFT85917.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727620|gb|EGG64076.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 200

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY +
Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169


>gi|281413717|ref|ZP_06245459.1| Holliday junction DNA helicase RuvA [Micrococcus luteus NCTC 2665]
          Length = 216

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHM--RQD 56
           MI  + G +E +  D  +I V G+        +TLS L  G+ G      V+TH+  ++D
Sbjct: 3   MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHEGRPG-----AVQTHLVVKED 57

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + L GF    +R+ F +L +  GVG R+A+ +LS      +  ++  ++ K + ++PGI
Sbjct: 58  ALTLSGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGI 117

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K+A +I+ EL G+       V    +  + E A + ++  +  + + A+  LG+ + +
Sbjct: 118 GPKMARKIIVELSGRLAPTGEPVPGAEAEASDEPA-VETV--WHADVVQAMAGLGWSEKE 174

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A  AV + +     + D+ + +   LRA
Sbjct: 175 ALKAVEATVAARPEL-DEGRDVAALLRA 201


>gi|57167798|ref|ZP_00366938.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228]
 gi|305432180|ref|ZP_07401344.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           coli JV20]
 gi|57020920|gb|EAL57584.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228]
 gi|304444723|gb|EFM37372.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           coli JV20]
          Length = 183

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 33/173 (19%)

Query: 44  FCTLFVETH----------MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI 93
           FC   +ETH          +++D  + +GFL   +++ F +L  V GVGA  AM + S +
Sbjct: 34  FCAAKLETHQKYELFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGASTAMAICSSL 93

Query: 94  TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153
                 +++ L +  V+ ++PGI  K A RI+ EL    + L S V  D S         
Sbjct: 94  DVNSFYKALNLGDESVLKKVPGIGPKSAKRIIVELGDAKVQLES-VSDDKS--------- 143

Query: 154 CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                    A++AL++LG+ QD+    ++SVL    N  D S++I+ AL+ ++
Sbjct: 144 --------EALAALLSLGFKQDK----ILSVL-STCNGKDTSELIKEALKKLA 183


>gi|78777407|ref|YP_393722.1| Holliday junction DNA helicase motor protein [Sulfurimonas
           denitrificans DSM 1251]
 gi|123727548|sp|Q30R94|RUVA_SULDN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78497947|gb|ABB44487.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas
           denitrificans DSM 1251]
          Length = 188

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      +V +DV GV Y ++  +++ S L   G+   LF    +R+D   L
Sbjct: 1   MIVGVRGVLVSKEPSFVHVDVGGVVYEVFISLQSFSALS--GNEVKLFTSHVIREDAQLL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA--QIPGISM 118
           +GFL   +++ F  L  + GVG +VAM + S  T ++   +++L N  + A  ++PGI  
Sbjct: 59  YGFLELGEKKLFERLIKINGVGPKVAMAICSTYTPSQF--AVVLNNKDITAVQRVPGIGP 116

Query: 119 KIASRIMTELKG 130
           K A RI+ EL G
Sbjct: 117 KSAGRILVELSG 128


>gi|257793715|ref|ZP_05642694.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781]
 gi|258410986|ref|ZP_05681266.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763]
 gi|258420213|ref|ZP_05683168.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719]
 gi|258438215|ref|ZP_05689499.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A9299]
 gi|258443678|ref|ZP_05692017.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115]
 gi|258446885|ref|ZP_05695039.1| Holliday junction DNA helicase [Staphylococcus aureus A6300]
 gi|258448799|ref|ZP_05696911.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A6224]
 gi|295406763|ref|ZP_06816568.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819]
 gi|297245654|ref|ZP_06929519.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796]
 gi|257787687|gb|EEV26027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781]
 gi|257840136|gb|EEV64600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763]
 gi|257843924|gb|EEV68318.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719]
 gi|257848259|gb|EEV72250.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A9299]
 gi|257851084|gb|EEV75027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115]
 gi|257854460|gb|EEV77409.1| Holliday junction DNA helicase [Staphylococcus aureus A6300]
 gi|257858077|gb|EEV80966.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A6224]
 gi|294968510|gb|EFG44534.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819]
 gi|297177305|gb|EFH36557.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796]
          Length = 203

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 4   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 63  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY +
Sbjct: 123 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 172


>gi|312622645|ref|YP_004024258.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203112|gb|ADQ46439.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 197

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           K ASRI+ ELK    K   +++   +  +  N E+    S+         AL++LGY  D
Sbjct: 119 KTASRIILELKETLKKEFKVATTAGKGEN--NYEKLEEISL---------ALLSLGYDID 167

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    + S    E ++ D    I+LAL+ +S
Sbjct: 168 EVYQVLSSEDFSELSLEDG---IKLALKKLS 195


>gi|325278890|ref|YP_004251432.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter
           splanchnicus DSM 20712]
 gi|324310699|gb|ADY31252.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter
           splanchnicus DSM 20712]
          Length = 193

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 13/164 (7%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           Y +I+  GV Y I   + T S +  +    +L++   +R+D + L+GF +  +R  F  L
Sbjct: 16  YAVIECGGVGYYINISVNTYSQIVALQQ-VSLYIHQIVREDALLLYGFFNKEERTVFRQL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-AIS 134
            SV G+GA  A  +LS +T  E+  +I+ +N   I  + GI +K A R++ ELK K A++
Sbjct: 75  ISVSGIGANTASVMLSSMTVKEIAGAILTENVNAIKSVKGIGLKTAQRVIIELKDKIAVT 134

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            S+           E+ +  +  +    A++ALV LG+ + QA 
Sbjct: 135 GSA-----------EEMNFGASVAIKEEALAALVMLGFVKAQAN 167


>gi|145652289|gb|ABP88205.1| hypothetical protein [Borrelia lonestari]
          Length = 195

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 23/188 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP---IRTLSCLGKIGDFCTLFVETHMRQDQ 57
           MI KI G I    E  V+I V    + ++     I  L  L  I     +    ++R+++
Sbjct: 1   MINKIYGKIVEKRESSVVIVVLPFEFEVFVSSFCIEKLELLENI----EILTYIYLRENE 56

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I+LFGFL+ L+R+ F  L +V G+G R A+ +LS I  +E   +I  ++ ++I++I GI 
Sbjct: 57  IKLFGFLNLLEREVFENLITVDGIGPRAALRILSGIKYSEFRNAIEREDIRLISKIKGIG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            KIA +I  +LKGK I  S  +  D+   + EQ               ++VN+G+ +   
Sbjct: 117 NKIAGKIFLKLKGKFIK-SDKLDLDIKFKDLEQ---------------SIVNMGFDRKLV 160

Query: 178 TTAVVSVL 185
            + +  +L
Sbjct: 161 ISKIKEIL 168


>gi|254253224|ref|ZP_04946542.1| DNA recombination protein [Burkholderia dolosa AUO158]
 gi|124895833|gb|EAY69713.1| DNA recombination protein [Burkholderia dolosa AUO158]
          Length = 164

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 23/180 (12%)

Query: 31  PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
           P+ T   L + G+   L  +  +R+D   L+GFL+  +R  F  L  + G+GAR+A+ VL
Sbjct: 2   PMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAVL 61

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150
           S ++  EL +++ +Q++  + ++PGI  K A R++ ELKGK  +    +    S      
Sbjct: 62  SGMSVQELAQAVTMQDAARLTRLPGIGKKTAERLLLELKGKLGADLGALAGAAS------ 115

Query: 151 AHICSMPS-FAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206
                 PS  A + ++AL+ LGY + +A  A+       KN+      S+ I+LAL+A+S
Sbjct: 116 ------PSDHAADILNALLALGYSEKEALAAI-------KNVPAGTGVSEGIKLALKALS 162


>gi|300692490|ref|YP_003753485.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum PSI07]
 gi|299079550|emb|CBJ52228.2| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum PSI07]
          Length = 162

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 34  TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI 93
           T   L   G+   L  +  +R+D   L+GF +  +R+ F  L  + G+GAR+A+ VLS +
Sbjct: 3   TFYNLPATGEKVVLLTQQIVREDAHLLYGFGTAAERETFRQLIKISGIGARIALAVLSGM 62

Query: 94  TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153
           +  EL +++ LQ +  + +IPGI  K A R++         L   +  D+  V    A  
Sbjct: 63  SVAELAQAVTLQEAGRLTRIPGIGKKTAERLLL-------ELKGKLGADLGAVPGGPA-- 113

Query: 154 CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             M   A++ ++AL+ LGY   +A  A+    K+       S+ I+LAL+A+S
Sbjct: 114 --MSDDAVDVLNALLALGYSDKEAALAI----KQVPTGTGVSEGIKLALKALS 160


>gi|229829132|ref|ZP_04455201.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM
           14600]
 gi|229792295|gb|EEP28409.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM
           14600]
          Length = 199

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           M   I+G +E +  + +++D  G+ Y I  P  +LS   +I     L V T++  R D  
Sbjct: 1   MFSYIQGRVEEINPEGIVLDHDGIGYEIGLPQSSLS---QIRRQMQLRVYTYLQVRDDGF 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGFL   D   F LL  V G+G + A+ +L  ++  +L  +I   + K IAQ PGI  
Sbjct: 58  SLFGFLKREDLDLFKLLIGVGGIGPKGALSILGVLSVDQLRFAIAAGDDKTIAQAPGIGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ +L+ K I  +  ++  +      +A   S       AI AL  LGY   +A 
Sbjct: 118 KTAQRVILDLRDK-IDFTQTLEAQLDS----KASDRSSDDIRGEAILALNALGYSSAEAL 172

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207
            A+  +     ++ D   +IR  L+ ++ 
Sbjct: 173 QAIRDLDISSMSVED---LIRAGLKELAL 198


>gi|289434813|ref|YP_003464685.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171057|emb|CBH27599.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 201

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTITTITPEYIVVETGQIGYQIITG-NPFSFQRLEGTDAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ V   ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYST-RELKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++  L KE ++  D+  I+LALR ++
Sbjct: 176 IIPKLAKEVDLTSDA-YIKLALRLMT 200


>gi|255534553|ref|YP_003094924.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium
           3519-10]
 gi|255340749|gb|ACU06862.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium
           3519-10]
          Length = 255

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KGN++ L    V+IDV GV Y +   ++T   L  +G    L ++  +R+D   L
Sbjct: 62  MIYSLKGNVQELNPTSVIIDVNGVGYYVGVSLQTSEKL-VLGKETFLNIQQIIREDAHLL 120

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F LL SV GVG   A+ +LS ++  E+  +I+  NS ++ ++ GI  K 
Sbjct: 121 FGFNTISEKELFNLLISVNGVGPVSALIMLSSLSLQEIASAILSGNSLLLQKVKGIGTKT 180

Query: 121 ASRIMTELKGK 131
           A RI+ +L+ K
Sbjct: 181 AERIIVDLRDK 191


>gi|257440216|ref|ZP_05615971.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197250|gb|EEU95534.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii
           A2-165]
          Length = 202

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 13/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V++   GV Y + CP      L  +G   TL+    + ++ I L
Sbjct: 1   MIYSLSGKIIKKTLNAVVVSCGGVGYYVQCPTSVAGALPGVGREATLYTVMSVAENDISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  +  F LL +V GVG +V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFATEEQQSCFELLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ---AHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ ELK K      V +  +  +N E    A        A  AI+ALV+LGY Q +A
Sbjct: 121 AQRIVLELKDK------VAKGFVDGINLEDVGAATAAPAAQGAGQAIAALVSLGYSQSEA 174

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV  +   + ++  + +II+LALR ++
Sbjct: 175 ALAVSKI---DASLPVE-EIIKLALRGMA 199


>gi|169629967|ref|YP_001703616.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus ATCC
           19977]
 gi|229560105|sp|B1MCJ1|RUVA_MYCA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169241934|emb|CAM62962.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus]
          Length = 202

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+V+I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1   MIASVNGEVIDIALDHVVIEAAGVGYRVNATPATLSTL-RRGTQIRLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFTDTDARDLFTTLLGVSGVGPKIAMATLAVYDAPTLRQALADGDVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +      +    + +  A +          + AL+ LG+   QA  A
Sbjct: 120 AERLVLELREKVAAAPGGTTE----LGRGTASLVRS-----QVVEALIGLGFAAKQAEQA 170

Query: 181 VVSVLKKEK---NIADDSQIIRLAL 202
             +VL ++      AD S ++R AL
Sbjct: 171 TDTVLAQDNPGDTGADVSGVLRSAL 195


>gi|315651980|ref|ZP_07904982.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium
           saburreum DSM 3986]
 gi|315485809|gb|EFU76189.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium
           saburreum DSM 3986]
          Length = 194

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58
           MI  I+G +     + V ++  G+ Y I+   R +  L K  +   + + T+++  +D  
Sbjct: 1   MIAYIRGIVTEKNVNTVTVECSGIGYEIFATGRDIDKLSKGSE---VLIHTYLKISEDAH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFL+  D   F  L  V GVG + A+ +++ + + +L  +I+ ++ K I    G+  
Sbjct: 58  TLYGFLNKDDMVMFKKLIIVNGVGPKAALSIMNTLNSFDLKIAIVTEDYKAICAAVGVGS 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           KIA +I+ ELK K      V   D+  +   +A   S  S    A+ ALV+LGY   +A 
Sbjct: 118 KIAKKIILELKEK------VKPDDIGTL---EAADTSDNSVVSEALEALVSLGYSNSEAY 168

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            A+  +  K  +  +D  I++LAL+
Sbjct: 169 KAIKEIEVKNTDTTED--ILKLALK 191


>gi|257469281|ref|ZP_05633375.1| Holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC
           49185]
 gi|317063528|ref|ZP_07928013.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC
           49185]
 gi|313689204|gb|EFS26039.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC
           49185]
          Length = 198

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 90/182 (49%), Gaps = 7/182 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +E    DY+ +DV GV Y +   +RT   +   G+   L++  ++++D  +L
Sbjct: 1   MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFIS-AGEEVKLYIYNYIKEDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R  F +L  V+G+G  +A+ V+S      + + +   +   + ++P +  K 
Sbjct: 60  IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYTNLKRVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + +++ +LK K  +L ++    +   N + A    +       ISAL  LGY + +  T 
Sbjct: 120 SQQLILDLKSKLKTLDAL---SIDTRNDDAAKHLMIEE---ELISALEGLGYSKKEINTL 173

Query: 181 VV 182
           + 
Sbjct: 174 IT 175


>gi|332653059|ref|ZP_08418804.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16]
 gi|332518205|gb|EGJ47808.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16]
          Length = 213

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 17/196 (8%)

Query: 14  EDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72
           E Y V+ID  GV Y       TLS L K G+   +F   ++R+D + L+GF +  +   F
Sbjct: 24  EPYLVVIDCGGVGYACRTTSYTLSALKK-GEKGKVFTHLNVREDAMELYGFATQEELNLF 82

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
             L SV GVG + A+ +LS  T   L  SII  + K +    GI  KIA R++ ELK K 
Sbjct: 83  QQLISVSGVGPKAALSILSSNTPANLALSIITGDEKALTCAQGIGKKIAQRVILELKDKL 142

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVLKKEKNI 191
               +V   + +        +  +P   ++ A +AL  LGY Q +   A+       K I
Sbjct: 143 AKGQAV---NGAGETYGGTGVTVIPENKLSEASAALAVLGYTQGEINVAL-------KGI 192

Query: 192 ADDS----QIIRLALR 203
             DS    QII+ AL+
Sbjct: 193 DLDSLTLEQIIKQALK 208


>gi|302335491|ref|YP_003800698.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM
           7084]
 gi|301319331|gb|ADK67818.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM
           7084]
          Length = 209

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  +   +V++DV G+ Y +     T + L  +G+   TL     +++  + 
Sbjct: 1   MIVQLTGTLVEVLPTHVIVDVGGIGYELGVSATTAASLPAVGEAGVTLLARMLVKESAVE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L  V GVG ++A+ VLS  +   L   ++ Q++  +A +PG+  K
Sbjct: 61  LYGFASREERAVFDRLVGVSGVGPKLALAVLSTFSPASLATVVVTQDATRMATVPGVGKK 120

Query: 120 IASRIMTELKG---KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            A R++ EL+    +   L  +V           A+     S   +A SAL+ +G+   +
Sbjct: 121 KAQRLLMELQDVFTRDTELRGLVGMSEPAPRSPLANTAE--SVQSDATSALLAMGFTPQE 178

Query: 177 ATTAV 181
           A  A+
Sbjct: 179 AELAL 183


>gi|313623659|gb|EFR93815.1| holliday junction DNA helicase RuvA [Listeria innocua FSL J1-023]
          Length = 201

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG ++ +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIVKTITPEYIVVETGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRE-LKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  + KE ++  D+  I+LAL+ ++
Sbjct: 176 VIPKMAKENDLTSDA-YIKLALQLMT 200


>gi|299822806|ref|ZP_07054692.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi
           DSM 20601]
 gi|299816335|gb|EFI83573.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi
           DSM 20601]
          Length = 200

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   I G +  +  ++++++   V Y  I   P    S  G+      +FV  H+R+D +
Sbjct: 1   MYDYINGTVTDITPEFIVVEAGQVGYQLITGNPFAFQSMSGQT---AKVFVYQHVREDSL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF +  +R  F  L SV G+G + A+ +++   A  L+ +I  ++   + + P +  
Sbjct: 58  TLFGFKTKEERFLFKKLLSVSGIGPKSALAIIATGDANALIGAIEAEDDVYLTKFPSVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A +I+ +LKGK   LS V         KE+     +      AI AL  LGY + +  
Sbjct: 118 KTARQIILDLKGK---LSDVDTSFAKMQRKEEDLTAGLTEALEEAILALEALGYNKKE-L 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             V+  L+KE +++ D+  I+LAL+ ++
Sbjct: 174 KKVIPKLEKE-DLSSDA-YIKLALQLMT 199


>gi|313473093|ref|ZP_07813577.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153]
 gi|313448796|gb|EEQ67671.2| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153]
          Length = 195

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 14/194 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++ +DV G  + IY   +  S     G    ++VE  +R + I L
Sbjct: 1   MYEYLEGTVTIITPSFIALDVGGQGFKIYSA-KPYSY--SEGQRIRVYVEQVVRDNDISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + AM +++  ++  L ++I       + + PG+  K 
Sbjct: 58  YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S V+QD+   +  QA          +A+ AL  LGY + +    
Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166

Query: 181 VVSVLKKEKNIADD 194
              + K   + AD+
Sbjct: 167 KPKLEKSTYDTADE 180


>gi|238855608|ref|ZP_04645909.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3]
 gi|260665332|ref|ZP_05866180.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933018|ref|ZP_06338412.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|238831752|gb|EEQ24088.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3]
 gi|260560836|gb|EEX26812.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302872|gb|EFA95080.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
          Length = 193

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 14/194 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++ +DV G  + IY   +  S     G    ++VE  +R + I L
Sbjct: 1   MYEYLEGTVTIITPSFIALDVGGQGFKIYSA-KPYSY--SEGQRIRVYVEQVVRDNDISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + AM +++  ++  L ++I       + + PG+  K 
Sbjct: 58  YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S V+QD+   +  QA          +A+ AL  LGY + +    
Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166

Query: 181 VVSVLKKEKNIADD 194
              + K   + AD+
Sbjct: 167 KPKLEKSTYDTADE 180


>gi|302872058|ref|YP_003840694.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574917|gb|ADL42708.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 197

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +Y++++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIMGTIQEVFSNYIILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V     +   KE+     +   ++    AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVA----ATTGKEEKTYEKLEEISL----ALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S    E ++ D    I+LAL+ +S
Sbjct: 171 QVLSSGDFSELSLEDG---IKLALKKLS 195


>gi|332530327|ref|ZP_08406273.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC
           19624]
 gi|332040313|gb|EGI76693.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC
           19624]
          Length = 194

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       VL+D  GV Y +   + T   L  +G   TL     +R+D   L
Sbjct: 1   MIGRLSGTLIAKNPPEVLVDCHGVGYEVQVSMNTFYHLPVLGQPVTLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F  L  V GVG R A+ VLS ++  EL +++  Q    + + PG+  K 
Sbjct: 61  YGFGEDAERAAFRELIKVSGVGPRTALAVLSGMSVAELAQAVTQQEMGRLLKAPGVGKKT 120

Query: 121 ASRIMT 126
           A R++ 
Sbjct: 121 AERLLL 126


>gi|229495868|ref|ZP_04389594.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis
           ATCC 35406]
 gi|229317181|gb|EEN83088.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis
           ATCC 35406]
          Length = 204

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I+ L     L+DV GV Y I   +   + L GK      L++   +R+D   
Sbjct: 6   MIAYIEGKIDRLSPTNALLDVGGVGYDINITLTDYTALQGKPS--ARLWITEIIREDAHL 63

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+ +  R +F  L SV GVG   A  +LS  T  +L   I      ++  + GI +K
Sbjct: 64  LYGFVREESRAFFEKLCSVSGVGPSTARLILSSYTPNDLASIIGNGAVDLLKNVKGIGLK 123

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK I LS+    D+S    E  +   + + +  A  AL  LG+ +     
Sbjct: 124 TAQRIVVDLKGK-IDLSAY---DLSEGMPEGGNAPEVAAVSDEAQRALKMLGFPEAAIRK 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV +VL  + ++  + ++I+ AL+
Sbjct: 180 AVKAVLGADAHLPVE-EVIKQALK 202


>gi|269941127|emb|CBI49513.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 200

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  HGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY +
Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169


>gi|86740076|ref|YP_480476.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3]
 gi|86566938|gb|ABD10747.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3]
          Length = 247

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 8/189 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV  +++C   TLS L ++G+  +L     +R+ ++ L
Sbjct: 1   MIASLAGTVTALTPLSAVIEVGGVGLLVHCSPSTLSRL-RVGESASLATTLIVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +LQS  GVG ++A  VL       +  ++  ++  V+ ++PGI  K 
Sbjct: 60  YGFADADARDVFEILQSAAGVGPKLAQAVLGVHDPDTVRRAVAEEDLAVLTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS----ALVNLGYGQDQ 176
           A RI+ +L+ +   L            +  +    MP+ A+   +    ALV LGY   +
Sbjct: 120 AQRIVLDLRDR---LGPPGDGAPLPGPRLTSGPEPMPADAVGVAATVREALVGLGYSGRE 176

Query: 177 ATTAVVSVL 185
           A  AV   L
Sbjct: 177 ADAAVSRAL 185


>gi|295398601|ref|ZP_06808633.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus
           viridans ATCC 11563]
 gi|294973202|gb|EFG48997.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus
           viridans ATCC 11563]
          Length = 210

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 104/209 (49%), Gaps = 16/209 (7%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           G +E +Y D V+++  G+ Y IY   P R    +G+      +++   + ++ IRL+GF 
Sbjct: 7   GQVESVYPDAVILETGGIGYYIYMANPYRFTDKIGQ-DRPVKIWLYQSVSENDIRLYGFK 65

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S  ++  F+ L SV G+G + A+ +LS      LV +I  +++  + + PG+  K A +I
Sbjct: 66  SQEEKIIFLQLISVSGIGPKSALSILSLDDNAGLVAAIQAEDNAFLMKFPGVGKKTAGQI 125

Query: 125 MTELKGK-----AISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           + +LK K     A S SS +  Q+ +     +Q ++  M         A+ +LGY Q + 
Sbjct: 126 VLDLKEKLPKVLAESPSSALFKQESLDIQGPDQVNLPFMHELE----EAMASLGYSQREI 181

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              V +       +   ++ IR+AL+ I+
Sbjct: 182 NRVVKNA--DFTGVTATAEAIRIALKFIT 208


>gi|257790728|ref|YP_003181334.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243]
 gi|257474625|gb|ACV54945.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243]
          Length = 197

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +         I+V G+ Y +      LS L + G    +     +R D + L
Sbjct: 1   MIAFLKGVLAAKTATTAYIEVNGIGYAVGMSQAGLSKLPEAGAAVEVHTFLQVRDDGLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  ++  F  L  V GVG +VA+  LS  +   LV ++  Q+   + +IPG+  K 
Sbjct: 61  FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG          + ++ +  E A + +  +       AL+++G+  ++A  A
Sbjct: 121 ASRIILELKGS-------FDEGLAGLFDEAAPVVASAANLAGTREALLSMGFTSEEADVA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
               LK     A +S +++ AL+
Sbjct: 174 ----LKGAPEGAAESVLLQYALK 192


>gi|150020803|ref|YP_001306157.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis
           BI429]
 gi|166231454|sp|A6LLH1|RUVA_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149793324|gb|ABR30772.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis
           BI429]
          Length = 189

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 21/172 (12%)

Query: 39  GKIGDFCT----LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           G   DF      +F +  +  D+I L+GF   L  + F  L  V  +G + A+ +++   
Sbjct: 34  GYFEDFLNEKIKVFTKMIVNDDEISLYGFSDVLKLKLFEKLILVNKLGPKSALKIITSSD 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
            + +V +I+ ++ K ++ +PGI  K A RI+ ELK       S+ + D++   K++    
Sbjct: 94  VSYIVSAIVNEDVKTLSTLPGIGPKTAERIILELK------DSMKEFDVTLTEKDKK--- 144

Query: 155 SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                 + AI ALV LG+ ++Q+  AV  +LKK+ ++ D   II+ AL+ +S
Sbjct: 145 -----ILEAIEALVTLGFSRNQSKKAVTQILKKDDSLDD---IIKKALKFLS 188


>gi|313884201|ref|ZP_07817967.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620648|gb|EFR32071.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 201

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 4/174 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +  ++  Y+++   G+ Y IY P    +    + +   +++E  +R+D + L
Sbjct: 1   MYEYIQGILSQIHPTYLVVTASGLAYKIYSP-NAYAWNRHLNEEVQVYLELVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL  V  +G + A+ +L+    T LV++I  QN   + + PG+  K 
Sbjct: 60  YGFKDMQEKELFNLLNRVSNIGPKSALSILALNDHTGLVQAIESQNVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +++ +L+GK   L   V  D + +   Q    S  +       AL  LGY Q
Sbjct: 120 AQQMILDLQGK---LGDFVANDGAELAPSQQASSSNQAQFDEVAEALAGLGYSQ 170


>gi|315658088|ref|ZP_07910960.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           lugdunensis M23590]
 gi|315496417|gb|EFU84740.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           lugdunensis M23590]
          Length = 203

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 6/158 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++ QG+ Y I  P  +           T++    +R+D   L
Sbjct: 2   MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYYQEVTIYTSLIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 61  YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 120

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHI 153
           A +I+ +LKGK     A S  S+   D+S  +++  +I
Sbjct: 121 ARQIILDLKGKVNYTEASSNDSIHIDDVSNTSQKDNYI 158


>gi|227529693|ref|ZP_03959742.1| crossover junction endoribonuclease subunit A [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350359|gb|EEJ40650.1| crossover junction endoribonuclease subunit A [Lactobacillus
           vaginalis ATCC 49540]
          Length = 200

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 100/194 (51%), Gaps = 12/194 (6%)

Query: 16  YVLIDVQGVCY--IIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72
           Y++++V G+ Y  ++  P R  +    K+    T++V   +R D I LFGF  + ++Q F
Sbjct: 16  YIVVEVNGIGYRLLVANPYRYHIDKRQKV----TVYVYQAVRDDDISLFGFSDEDEKQLF 71

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
           M L +V G+G + A+ +L+      L+ +I   + K + + PGI  K AS+I  +LK K 
Sbjct: 72  MQLINVSGIGPKSALAILANPDHEGLINAIANNDVKYLTRFPGIGKKTASQICLDLKDKI 131

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
             L+      +  +  E  ++      A+ A++A   LGY +++    +   L+KE   +
Sbjct: 132 ERLAPSESNLLKPLLPENENVNDALQDALEALTA---LGY-KEREVKRIKKELEKEGETS 187

Query: 193 DDSQIIRLALRAIS 206
            + + +R ALR ++
Sbjct: 188 TE-EYLRHALRLLN 200


>gi|317969751|ref|ZP_07971141.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0205]
          Length = 225

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 17/218 (7%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G +   +       VL+   GV Y +  P R    LG  G    L V   +R+D
Sbjct: 9   MIGWLQGQLADRWHLNNRFGVLLVCSGVGYEVQMPRRHWDQLGGNGTEAALHVHQVIRED 68

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  F  L +V GVG ++A+G+L +++  ELV +I+  + + + Q PG+
Sbjct: 69  SWTLYGFCARHERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRQLCQAPGV 128

Query: 117 SMKIASRIMTELK-------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
             + A R+  EL+       G+++ LS     D+   +  +     +       +SA   
Sbjct: 129 GKRTAERLSVELRTRLQQRYGESLQLSQ--SDDLQVSDSGEGPAAGVREEVQLTLSA--- 183

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAIS 206
           LGY   +   A+ ++  +   + +D    +R +LR +S
Sbjct: 184 LGYEALEINRALRAISPQGPELGEDGDAWLRESLRYLS 221


>gi|189485463|ref|YP_001956404.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|254767397|sp|B1H0B1|RUVA_UNCTG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170287422|dbj|BAG13943.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 204

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 12/198 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFV---ETHMRQDQ 57
           MI  + G ++    D + IDV G+ Y I  PI T   L +  +   +++      M    
Sbjct: 1   MIDYLYGTLDSKSTDGITIDVNGIGYEISVPISTFLKLPETRNPIKIYIVESTAGMYGGV 60

Query: 58  IRLFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITAT--ELVESIILQNSKVIAQIP 114
           I L+GF +  +R+ ++L++  V G+GA+ AM    +I+ +      +II +N  ++ +I 
Sbjct: 61  ISLYGFFTIEEREMYLLIKDKVHGIGAKKAMEYTDKISKSFANFKTAIISKNPSMLNEIF 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G + K A +++  LK K IS  +V+ ++     K+        +    AI+ L+ LGY  
Sbjct: 121 GFTKKTADKLIVALKDK-ISTVNVLNKE-----KQTGAETIKNTMVSEAIAGLITLGYKM 174

Query: 175 DQATTAVVSVLKKEKNIA 192
            QA  AV +V +  +NI 
Sbjct: 175 QQARVAVTNVYEHNENIT 192


>gi|313206325|ref|YP_004045502.1| holliday junction DNA helicase subunit ruva [Riemerella
           anatipestifer DSM 15868]
 gi|312445641|gb|ADQ81996.1| Holliday junction DNA helicase subunit RuvA [Riemerella
           anatipestifer DSM 15868]
 gi|315023191|gb|EFT36202.1| Holliday junction DNA helicase RuvA [Riemerella anatipestifer
           RA-YM]
 gi|325336230|gb|ADZ12504.1| Holliday junction resolvasome, DNA-binding subunit [Riemerella
           anatipestifer RA-GD]
          Length = 194

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 2/146 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ L   +++I+  GV Y +   + T      IG    ++ +  +R+D   L
Sbjct: 1   MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNTSKHFS-IGKESLIYTQQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL SV GVG   AM +LS +   E+ ++I+  NS V+ ++ GI  K 
Sbjct: 60  YGFSELKEKEMFNLLISVNGVGPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV 146
           A RI+ +LK K +   +  + D+S V
Sbjct: 120 AQRIIIDLKDKVLHFGA-DESDISTV 144


>gi|312870465|ref|ZP_07730585.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3]
 gi|311094022|gb|EFQ52346.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3]
          Length = 197

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   + G I  +   Y+++DVQGV Y  ++  P R      K      +FV   +R D I
Sbjct: 1   MYEYLTGTISIVAPQYIVVDVQGVGYKLLVANPYRFHEDSAKA---VRVFVYQAVRDDDI 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF    +++ FM L +V G+G + A+ +L+      LV++I   N   + + PGI  
Sbjct: 58  SLFGFSDQAEKRLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNIGYLTKFPGIGK 117

Query: 119 KIASRIMTELKGK 131
           K AS+I+ +LK K
Sbjct: 118 KTASQIVLDLKDK 130


>gi|163783946|ref|ZP_02178915.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880781|gb|EDP74316.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 180

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 33/208 (15%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +  D+++I+       I  P +      KI  + T       + +  RL
Sbjct: 1   MIDYIKGKVIEVLNDFIVIETGNFGIKIETPHKFEKKDTKIYTYLTF------KDESFRL 54

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISM 118
           FGF     R+ F+ L S+ G+G + A  +L      +   ++ ++N+++  ++ +PGI  
Sbjct: 55  FGFKDRQTRELFIKLTSINGIGVKHAFSILKNFNYEDF--TLAVENNRIDLLSSVPGIGK 112

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELKGK +S S                    P F  +A+ ALV+LG+ +++  
Sbjct: 113 KTASRIILELKGK-LSFS------------------EEPIFN-DAVEALVSLGFEKEKVI 152

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             V  + +K  ++    ++I+L+L+ +S
Sbjct: 153 KIVKELSQKTNSL---EELIKLSLQKLS 177


>gi|313633143|gb|EFS00032.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL N1-067]
 gi|313637717|gb|EFS03086.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL S4-171]
          Length = 201

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIITTITPEYIVVETGQIGYQIITG-NPFSFQRLEGTDAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ V   ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYST-RELKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++  L KE ++  D+  I+LALR ++
Sbjct: 176 IIPKLAKEADLTSDAY-IKLALRLMT 200


>gi|108799233|ref|YP_639430.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. MCS]
 gi|119868349|ref|YP_938301.1| Holliday junction DNA helicase motor protein [Mycobacterium sp.
           KMS]
 gi|126434891|ref|YP_001070582.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS]
 gi|123369347|sp|Q1B9R0|RUVA_MYCSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230569|sp|A3PYW4|RUVA_MYCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230570|sp|A1UFA3|RUVA_MYCSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|108769652|gb|ABG08374.1| Holliday junction DNA helicase subunit RuvA [Mycobacterium sp. MCS]
 gi|119694438|gb|ABL91511.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. KMS]
 gi|126234691|gb|ABN98091.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS]
          Length = 196

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 12/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTESRLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++A+  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFADADARDLFGTLLGVSGVGPKIALATLAVYDAPTLRQALADGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   +++      + V     H    P      + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKIGPVTT-----GAGVTAVGGHAVRGP-----VVEALVGLGFAAKQAEEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
              VL  + + A  S  +R AL
Sbjct: 170 CDKVLAADPD-ATTSSALRAAL 190


>gi|224476739|ref|YP_002634345.1| Holliday junction DNA helicase RuvA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254767387|sp|B9DNE5|RUVA_STACT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222421346|emb|CAL28160.1| holliday junction DNA helicase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 201

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++  GV Y I  P  +           T++    +R+D   L
Sbjct: 1   MYAYIKGKLSQLFPTHVVVETNGVGYEIQTP-NSYRFQQYYQQEVTIYTSLVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F+ L  V G+G + A+ +L+  T  E+   I  +N   + + PGI  K 
Sbjct: 60  YGFMSEEEKGMFLSLNKVTGIGPKSALAILAASTPNEVKIGIENENETYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A +I+ +LKGK   +    +   + +N E +           A+ AL  LGY + +
Sbjct: 120 ARQIILDLKGK---VQITEENPETLLNFEGSESNQTSPILDEALLALEALGYSKRE 172


>gi|291286413|ref|YP_003503229.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883573|gb|ADD67273.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM
           12809]
          Length = 192

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 15/190 (7%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           +ID   V + +     T   L + G    ++    MR+D + L+GF    +++ F+LL +
Sbjct: 18  VIDTGAVAFEMSISASTYQQLPETGQKAHVYTHFVMREDGVYLYGFSKMEEKKLFLLLIT 77

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           +  VG ++A+ +LS +   + + +++     +I+ IPGI  K A RI+ EL+ K  S+S 
Sbjct: 78  ISKVGPKLALAILSGMDVNKFMNAVMNSEIGLISTIPGIGKKTAERIVVELRDKFGSMSV 137

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
               +      E            + +SAL+NLGY +     AV  + K +       ++
Sbjct: 138 STGDEPVAGGAE------------DVVSALLNLGYSRADCQKAVNKIYKTDSGF---EEL 182

Query: 198 IRLALRAISC 207
            + AL+ +S 
Sbjct: 183 FKGALKELSS 192


>gi|228475171|ref|ZP_04059897.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119]
 gi|314936245|ref|ZP_07843592.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270782|gb|EEK12184.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119]
 gi|313654864|gb|EFS18609.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 201

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 2/132 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   IKG++  L+  +++++   G+ Y I  P  +      +   C +F    +R+D   
Sbjct: 1   MYAYIKGHLSQLFPTHIVVETSSGIGYEIQTP-NSYRFQKYLNQECKVFTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+S+ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K
Sbjct: 60  LYGFISEEEKEMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKK 119

Query: 120 IASRIMTELKGK 131
            A +I+ +LKGK
Sbjct: 120 TARQIVLDLKGK 131


>gi|329945621|ref|ZP_08293354.1| Holliday junction DNA helicase RuvA, N terminal domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528624|gb|EGF55589.1| Holliday junction DNA helicase RuvA, N terminal domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 218

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 15/214 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L +IG+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RIGEEVLVHTELVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFTDVDERDSFRTLMSAKGVGAKLALAMLAVHTPNMLRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINA------ISALVNLGY 172
           A R++ ++  K   L  V   D          I    + +F+  A      ++ALV LG+
Sbjct: 120 AQRVILDVADK---LGPVTGDDADTAMPAAKAIGDKGVETFSEGAQPSADVVAALVQLGW 176

Query: 173 GQ---DQATTAVVSVLKKEKNIADDSQIIRLALR 203
            +    QA TAV +   +     D + ++R +LR
Sbjct: 177 NEASARQAVTAVEADYAEAGENPDMAALLRASLR 210


>gi|229820484|ref|YP_002882010.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM
           12333]
 gi|259495635|sp|C5C5Q7|RUVA_BEUC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229566397|gb|ACQ80248.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM
           12333]
          Length = 200

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 45  CTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104
           C L     +R+D + LFGF    +R  F L+Q+V GVG R+A+ +L+  T   L  ++  
Sbjct: 44  CELHTSLVVREDSLTLFGFADADERDVFELVQTVSGVGPRLALAMLAVHTPDGLRRAVAQ 103

Query: 105 QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
           ++   + ++PGI  K ASRI+ EL G  +  +            + A +          +
Sbjct: 104 EDLAALVRVPGIGRKGASRIVLEL-GDRLGPAQGAAPAAPVAVDDGADV----------V 152

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAIS 206
            ALV LG+   QA  AV  VL+     A D+  ++R ALR+++
Sbjct: 153 DALVGLGWPVRQAQDAVRGVLEDADGTAPDAAGLLRAALRSLA 195


>gi|323489997|ref|ZP_08095218.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus
           donghaensis MPA1U2]
 gi|323396293|gb|EGA89118.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus
           donghaensis MPA1U2]
          Length = 198

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++I+ QG+ + I+ P       G   +   +F+  H+R+D   L
Sbjct: 1   MYDYIKGTVTRVTPEYLVIEQQGIGWQIFAP--NPYSFGT--EDLQVFLHHHVREDAQLL 56

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   R+ F  L SV G+G + A+ +L+      ++E+I  +N   + + PG+  K 
Sbjct: 57  FGFPTFEQRELFRKLISVSGIGPKGALAILASGQPQHVIEAIEQENESYLVKFPGVGKKT 116

Query: 121 ASRIMTELKGK 131
           A +++ +LKGK
Sbjct: 117 ARQMILDLKGK 127


>gi|227877607|ref|ZP_03995661.1| helicase Holliday junction [Lactobacillus crispatus JV-V01]
 gi|256844550|ref|ZP_05550036.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           125-2-CHN]
 gi|256849061|ref|ZP_05554494.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US]
 gi|262047543|ref|ZP_06020498.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           MV-3A-US]
 gi|293381579|ref|ZP_06627566.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1]
 gi|312977890|ref|ZP_07789636.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus
           CTV-05]
 gi|227862801|gb|EEJ70266.1| helicase Holliday junction [Lactobacillus crispatus JV-V01]
 gi|256613628|gb|EEU18831.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           125-2-CHN]
 gi|256713837|gb|EEU28825.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US]
 gi|260572119|gb|EEX28684.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           MV-3A-US]
 gi|290921849|gb|EFD98864.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1]
 gi|310895197|gb|EFQ44265.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus
           CTV-05]
          Length = 195

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 11/168 (6%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y +Y P       G+      +F+E  +R   I L+GF S  D+  F+ L SV G+G + 
Sbjct: 26  YKVYSPTPFAYTQGQK---AKVFIEQVVRDTGITLYGFQSQDDKGLFLKLLSVSGIGPKS 82

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
           AM +++   +  L E+I     K + + PG+  K AS+I+ +LKGK   L   V +    
Sbjct: 83  AMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---LGDYVARLDRP 139

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
            N E     ++P    +A+ AL+ LGY Q +       + K   N AD
Sbjct: 140 DNGE-----NVPPALNDALLALIALGYTQKEVDRITPKLEKVAANTAD 182


>gi|312134958|ref|YP_004002296.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           owensensis OL]
 gi|311775009|gb|ADQ04496.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           owensensis OL]
          Length = 197

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 106/211 (50%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGTIQEVFSNYVILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +L+ I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILASIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDM---SCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           K ASRI+ ELK         ++++    +   KE+     +   ++    AL++LGY  D
Sbjct: 119 KTASRIILELK-------ETLKKEFKVAATTGKEEKTYEKLEEISL----ALLSLGYDID 167

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    + S    E ++ D    I+LAL+ +S
Sbjct: 168 EVNQVLSSGDFSELSLEDG---IKLALKKLS 195


>gi|260898721|ref|ZP_05907217.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           Peru-466]
 gi|308089527|gb|EFO39222.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           Peru-466]
          Length = 147

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 72/131 (54%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGK 131
           A R++ E+K +
Sbjct: 121 AERLVVEMKDR 131


>gi|259502857|ref|ZP_05745759.1| crossover junction endoribonuclease subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169224|gb|EEW53719.1| crossover junction endoribonuclease subunit A [Lactobacillus antri
           DSM 16041]
          Length = 197

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   + G I  +   Y+++DV GV Y  ++  P R             +FV   +R D I
Sbjct: 1   MYEYLTGTISIVAPQYIVVDVHGVGYKLLVANPYRFHEDPATA---VRVFVYQAVRDDDI 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF    ++Q FM L +V G+G + A+ +L+      LV++I   N   + + PGI  
Sbjct: 58  SLFGFSDQAEKQLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNISYLTKFPGIGK 117

Query: 119 KIASRIMTELKGKAISLSS 137
           K AS+I+ +LK K  + +S
Sbjct: 118 KTASQIVLDLKDKLAAATS 136


>gi|15827159|ref|NP_301422.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae TN]
 gi|221229637|ref|YP_002503053.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae Br4923]
 gi|730695|sp|P40832|RUVA_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767378|sp|B8ZUI1|RUVA_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|466820|gb|AAA17095.1| ruvA [Mycobacterium leprae]
 gi|13092707|emb|CAC29990.1| Holliday junction DNA helicase component [Mycobacterium leprae]
 gi|219932744|emb|CAR70575.1| Holliday junction DNA helicase component [Mycobacterium leprae
           Br4923]
          Length = 203

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 19/193 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  G+ Y +      L+ L + G    L     +R+D + L
Sbjct: 1   MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATL-RQGSQARLVTAMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F+ L SV GVG R+AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ EL+ K     A  L+     D + V               + + ALV LG+   
Sbjct: 120 AERIVLELRDKVGPVGASGLTVGTAADGNAVRG-------------SVVEALVGLGFAAK 166

Query: 176 QATTAVVSVLKKE 188
           QA  A   VL  E
Sbjct: 167 QAEEATDQVLDGE 179


>gi|296111820|ref|YP_003622202.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU
           11154]
 gi|295833352|gb|ADG41233.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU
           11154]
          Length = 196

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 25/197 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +Y  Y++I D  GV Y ++   P R    +        ++VE  +R++ 
Sbjct: 1   MYEYINGLITNIYPAYLVICDRSGVGYKLFAANPYRFEQNVE-----SHVYVEQIVREND 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I ++GF+ + ++  F  L +V G+G + A+ +L+   AT LV ++   ++  + Q PG+ 
Sbjct: 56  IAMYGFIDENEKILFNKLLNVSGIGPKSALAILASDDATGLVNAVANDDASYLTQFPGVG 115

Query: 118 MKIASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            K A +I+ +LKGK   +++S+ VQ      N  QA          +A+ AL +LGY   
Sbjct: 116 KKTAQQIVLDLKGKLDDLAISAGVQGPTREQNTNQA--------LSDALEALESLGYSAK 167

Query: 176 QATTAVVSVLKKEKNIA 192
           +       V K EK +A
Sbjct: 168 E-------VAKLEKTLA 177


>gi|241895534|ref|ZP_04782830.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides
           ATCC 33313]
 gi|241871112|gb|EER74863.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides
           ATCC 33313]
          Length = 196

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++ID+QGV Y +         L       T++VE  +R +   L
Sbjct: 1   MYEYLKGTITAILPSYIVIDIQGVGYRVLVANPYAFSLNST---MTVYVEQIIRDNDQNL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D+  F  L +V G+G + A+ +L+    T L+ +I   +   + + PGI  K 
Sbjct: 58  YGFLTKEDKDLFQKLLNVSGIGPKSALAILANSDHTGLINAITQNDIGFLTKFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           A +I+ +L+ K   L+  +  +   V +E
Sbjct: 118 AQQIVLDLQNKLSDLTLSIDDNNVSVQEE 146


>gi|30022496|ref|NP_834127.1| Holliday junction DNA helicase motor protein [Bacillus cereus ATCC
           14579]
 gi|218234847|ref|YP_002369230.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264]
 gi|229048130|ref|ZP_04193701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH676]
 gi|33301596|sp|Q817W3|RUVA_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725434|sp|B7HE55|RUVA_BACC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29898054|gb|AAP11328.1| Holliday junction DNA helicase ruvA [Bacillus cereus ATCC 14579]
 gi|218162804|gb|ACK62796.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264]
 gi|228723233|gb|EEL74607.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH676]
 gi|326942202|gb|AEA18098.1| Holliday junction DNA helicase motor [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 205

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 16/194 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A +++ +LKGK   L+ VV         D    ++++     +      A+ AL  LGY 
Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGYA 171

Query: 174 QDQATTAVVSVLKK 187
           + + +  V  +LK+
Sbjct: 172 EREVSRVVPELLKE 185


>gi|313847675|emb|CBY16663.1| putative holliday junction DNA helicase RuvA [Chlamydophila
           psittaci RD1]
          Length = 222

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++++ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 16  MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 75

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 76  LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 135

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q  +     +      PS     I AL  LGY +  A  
Sbjct: 136 TAEKLMVDLKQKLADLLPLDSQITASWGPAK------PSCMEEGIQALAALGYPKSSAER 189

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +   + +  + A  ++I+ +AL+
Sbjct: 190 MIAEAMSELPDHASIAEILPIALK 213


>gi|146296577|ref|YP_001180348.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166230531|sp|A4XJS2|RUVA_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145410153|gb|ABP67157.1| Holliday junction DNA helicase subunit RuvA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 197

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 23/212 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   +L+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDYQQLIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQ 174
           K ASRI+ ELK    K   ++S    +     K            +  IS AL++LGY  
Sbjct: 119 KTASRIILELKETLKKEFKVASTSGTEEKTYEK------------LEEISLALLSLGYEI 166

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           D+    + S    E ++ D    I+LAL+ +S
Sbjct: 167 DEINQVLSSEDFSELSLEDG---IKLALKKLS 195


>gi|295692269|ref|YP_003600879.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus
           crispatus ST1]
 gi|295030375|emb|CBL49854.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           crispatus ST1]
          Length = 195

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 11/168 (6%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y +Y P       G+      +F+E  +R   I L+GF S  D+  F+ L SV G+G + 
Sbjct: 26  YKVYSPTPFAYTQGQK---AKVFIEQVVRDTGITLYGFQSQDDKGLFLKLLSVSGIGPKS 82

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
           AM +++   +  L E+I     K + + PG+  K AS+I+ +LKGK   L   V +    
Sbjct: 83  AMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---LGDYVARLDRP 139

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
            N E      +P    +A+ AL+ LGY Q +       + K   N AD
Sbjct: 140 DNGE-----DVPPALNDALLALIALGYTQKEVDRITPKLEKVAANTAD 182


>gi|119952829|ref|YP_945038.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135]
 gi|254766946|sp|A1QYH6|RUVA_BORT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119861600|gb|AAX17368.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135]
          Length = 196

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 15/134 (11%)

Query: 52  HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
           H+R+D+IRLFGFL+  +R+ F  L SV G+G + A+ +LS I   E  +++  ++ K+I+
Sbjct: 51  HLREDEIRLFGFLNVSEREVFEKLISVDGIGPKAALRILSGIKYNEFRDAVEREDVKLIS 110

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
            + GI  K+A +I  +L+GK +            VN+  + +            ++VN+G
Sbjct: 111 NVKGIGNKMAGKIFLKLRGKLVK-----------VNEASSGVLKFKELE----QSIVNMG 155

Query: 172 YGQDQATTAVVSVL 185
           + +     A+  ++
Sbjct: 156 FDRKLVAAAIKEIM 169


>gi|289641361|ref|ZP_06473526.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca
           glomerata]
 gi|289508823|gb|EFD29757.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca
           glomerata]
          Length = 264

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV  ++ C   TL+ L ++G    L     +R+ ++ L
Sbjct: 1   MIASVAGTVAALSPDAAVVEVGGVGLLVQCAPATLAGL-RVGQQARLVTTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  LQS  GVG R+A  VL   +   +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFADADERDVFETLQSASGVGPRLAQAVLGVHSPDSVRRAVAAEDLAALTKVPGIGRKG 119

Query: 121 ASRIMTELK 129
           A RI+ +L+
Sbjct: 120 AQRIVLDLR 128


>gi|241889770|ref|ZP_04777068.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC
           10379]
 gi|241863392|gb|EER67776.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC
           10379]
          Length = 193

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 27/183 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG I  +    +++D  G+ Y  ++  P        ++ +  T+F+   +R+D  
Sbjct: 1   MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEY-----QLNEEKTVFISQQVREDSN 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF +   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q+   + + PGI  
Sbjct: 56  ILYGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVTYLTKFPGIGK 115

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYG 173
           K A +I+ +L+GK          D S  N     I S P+ A+N     AI AL  LGY 
Sbjct: 116 KSAQQIILDLQGKV---------DFSMTN-----ISSAPT-AVNNYLSDAILALEALGYS 160

Query: 174 QDQ 176
           + +
Sbjct: 161 KKE 163


>gi|262341131|ref|YP_003283986.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272468|gb|ACY40376.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 196

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 11/137 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL----GKIGDFCTLFVETHM--R 54
           MI  ++G +    + Y++ID  GV Y I+  + T S L    GK  D C   + T++  +
Sbjct: 1   MITHLRGKLIEKNQSYLIIDCHGVGYHIHISLYTHSSLLEEEGK--DIC---IHTYLFIK 55

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
            +Q  L+GF   ++R+ F  L SV G+G   A+ +LS +T  E+ +SI  ++ K   ++ 
Sbjct: 56  DNQHVLYGFFDKIERKIFSYLISVNGIGPSSAIMLLSSLTPYEIEKSISKEDIKAFDKVK 115

Query: 115 GISMKIASRIMTELKGK 131
           GI  K A RI+ ELK K
Sbjct: 116 GIGTKTAQRIIIELKDK 132


>gi|315453042|ref|YP_004073312.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
 gi|315132094|emb|CBY82722.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
          Length = 181

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 22/201 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G++  +    + ++V+GV Y +   + T S L + G    L+     ++    L
Sbjct: 1   MIVGLIGHVHSIEPTLIALNVRGVVYGVQVSLHTSSLLQE-GQEVHLYTSLISKEGDQSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +R  F+ L  + GVG ++A+ +LS  T  E    +  Q++K + ++PG+  K+
Sbjct: 60  FGFLELEERALFVRLIKISGVGPKIALAILSVYTPLEFATLLETQHTKALQKVPGVGSKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG--QDQAT 178
           AS+IM +L+G   S      QD              P++ I A+ AL +LG+   + Q  
Sbjct: 120 ASKIMFDLEGYLPS----AHQD--------------PAY-IQAVQALESLGFKSLEVQKV 160

Query: 179 TAVVSVLKKEKNIADDSQIIR 199
            A +  L  E+ I +  Q +R
Sbjct: 161 CADLKGLSTEEMIKEALQKLR 181


>gi|157413283|ref|YP_001484149.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9215]
 gi|167012662|sp|A8G4N2|RUVA_PROM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157387858|gb|ABV50563.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9215]
          Length = 225

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 74/122 (60%), Gaps = 9/122 (7%)

Query: 16  YVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           +VLI+ QG+ Y I      +  ++T     K     TL+++   ++D   LFGF S   +
Sbjct: 20  FVLINCQGLGYEIQILESFFLKLKTNQISNKK---ITLWIKHIKKEDSDLLFGFTSKDQK 76

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            +F+ + SV+GVG+++ M +L++ + +E++++I  Q+ K+I  IPGI  K++ R++ ELK
Sbjct: 77  FFFIEILSVRGVGSQIGMSILNKFSISEIIKAIKTQDKKLICSIPGIGQKMSDRLILELK 136

Query: 130 GK 131
            K
Sbjct: 137 SK 138


>gi|167770542|ref|ZP_02442595.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM
           17241]
 gi|167667137|gb|EDS11267.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM
           17241]
          Length = 172

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 56/100 (56%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + TLSCL  +G   TL+   ++R+D + L+GF +  +   F +L  V GVG + A+ +LS
Sbjct: 4   LTTLSCLPPVGGEATLYTHLNVREDALDLYGFYTQAELNAFKMLIGVSGVGPKSALAILS 63

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
            +T  +L   I   +SK +   PGI  K A RI+ E K +
Sbjct: 64  DMTPDKLALCIAAGDSKSLRAAPGIGPKAAQRIILECKDR 103


>gi|315282450|ref|ZP_07870861.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120]
 gi|313613902|gb|EFR87635.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120]
          Length = 201

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTDAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++         +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVFTAPGNDIVAGLSPQLEEAVLALEALGYSTRE-LKK 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  L KE ++  D+  I+LAL+ ++
Sbjct: 176 VIPKLAKETDLTSDA-YIKLALQLMT 200


>gi|145594353|ref|YP_001158650.1| Holliday junction DNA helicase RuvA [Salinispora tropica CNB-440]
 gi|189045768|sp|A4X5X2|RUVA_SALTO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145303690|gb|ABP54272.1| Holliday junction DNA helicase subunit RuvA [Salinispora tropica
           CNB-440]
          Length = 200

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +++V GV   + C   T++ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGVVTATGPDHAVLEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +  F LLQ+  GVG R+A  VL+      +  +I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKALFELLQTASGVGPRLAQAVLAVHPPEAVRAAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDRIGPVP---------VGADSAAGVTTGAWPEQVRQALVGLGWTAAQADQA 170

Query: 181 VVSV 184
           V +V
Sbjct: 171 VTAV 174


>gi|94987628|ref|YP_595561.1| Holliday junction DNA helicase RuvA [Lawsonia intracellularis
           PHE/MN1-00]
 gi|123262079|sp|Q1MP37|RUVA_LAWIP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94731877|emb|CAJ55240.1| Holliday junction resolvasome, DNA-binding subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 199

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G I    E   V+    G+ Y ++    T S L   G+    ++   +R+D   
Sbjct: 1   MIAYLEGYIAEFGETSCVVATSSGIGYEVFLTTPTRSTLPNKGEQVRFYICHIVREDIQE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F++L S+  VGAR A+ +LS     +L + +I ++   + ++ GI  K
Sbjct: 61  LFGFETWDERQTFIVLTSISKVGARTALNMLSTFRPNDLRQCVIEEDIFALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K       +Q D +        I    S   + ++ L  LGY +++++ 
Sbjct: 121 TAQHIFLELKYK-------LQIDGNSTTSSSPSIGQ--SLFYDILTGLQGLGYTKEESSV 171

Query: 180 AVVSVLKKEKNIADDSQIIR 199
            + SVL+ E ++   S + R
Sbjct: 172 VIKSVLQHEPDLDVGSALRR 191


>gi|283456064|ref|YP_003360628.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1]
 gi|283102698|gb|ADB09804.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1]
          Length = 168

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 19/172 (11%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101
           G    ++   ++ QD I LFGFL+   ++ F+ LQ V G+G +VA+ +LS +    L  +
Sbjct: 4   GQEVKVYTSLNVSQDAITLFGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHA 63

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SF 159
           +   ++  +A+ PG+  K A +I+ ELKG +I LS +         +  A + S P  + 
Sbjct: 64  VADGDATALAKAPGLGKKGAQKIILELKG-SIDLSQI---------ETAASVISRPEDTG 113

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIA------DDSQIIRLALRAI 205
           +   +  L++LG+ Q  A  AV  V  +  +IA      D  ++++LAL ++
Sbjct: 114 SEQVVEGLISLGWRQQDALHAVQEVC-RSNDIATPLSNEDVPRVLKLALTSL 164


>gi|317051309|ref|YP_004112425.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5]
 gi|316946393|gb|ADU65869.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5]
          Length = 202

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 12/180 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  + G +  L +D   I    GV Y +  P    + L K+    ++     +++D I 
Sbjct: 1   MISLVSGTVHSLTQDRATILTSGGVGYELSIPASLATSL-KVDQTVSIQTWMGVKEDAIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  ++  F+LL  V G+GA++A+  +  +   +L  +I + +   I +IPG+  K
Sbjct: 60  LYGFSSSEEKALFLLLMKVSGIGAKIALAAVGTLNTQQLGNAIAMGDIATIQRIPGVGKK 119

Query: 120 IASRIMTELKGK---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           +A +I  ELK K   A + SS  Q      +         PS   +A+  L+ LG  +++
Sbjct: 120 VAEKIALELKDKVTPAAATSSAPQAFTGTTS-------GTPSVFADAVQGLIALGLRREE 172


>gi|256852230|ref|ZP_05557616.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           27-2-CHN]
 gi|260661738|ref|ZP_05862649.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           115-3-CHN]
 gi|282932642|ref|ZP_06338056.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|297205604|ref|ZP_06923000.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           jensenii JV-V16]
 gi|256615276|gb|EEU20467.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           27-2-CHN]
 gi|260547485|gb|EEX23464.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           115-3-CHN]
 gi|281303216|gb|EFA95404.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|297150182|gb|EFH30479.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           jensenii JV-V16]
          Length = 193

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 14/194 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++ +DV G  + I+   +  S     G    ++VE  +R + I L
Sbjct: 1   MYEYLEGTVTIITPSFIALDVGGQGFKIFSA-KPYSY--SEGQRIRVYVEQVVRDNDISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + AM +++  ++  L ++I       + + PG+  K 
Sbjct: 58  YGFESSDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S V+QD+   +  QA          +A+ AL  LGY + +    
Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166

Query: 181 VVSVLKKEKNIADD 194
              + K   + AD+
Sbjct: 167 KPKLEKSSFDTADE 180


>gi|314933806|ref|ZP_07841171.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87]
 gi|313653956|gb|EFS17713.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87]
          Length = 200

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 24/197 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57
           M   +KG +  L+  +V+++  G+ Y I  P   R    L + +  F +L V    R+D 
Sbjct: 1   MYAYVKGTLTQLFPTHVVVETSGIGYEIQTPNSYRFQKYLNRDVQIFTSLIV----REDA 56

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF+S+ ++  F  L  V G+G + A+ +L+  +   +  +I  +N   + Q PGI 
Sbjct: 57  QLLYGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNGVKRAIENENDAYLTQFPGIG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCV------NKEQAHICSMPSFAINAISALVNLG 171
            K A +I+ +LKGK     ++ ++D   +      N EQ+ +         A+ AL  LG
Sbjct: 117 KKTARQIVLDLKGKV----TITEEDSESLLKVDVNNDEQSQVVK------EAMLALEALG 166

Query: 172 YGQDQATTAVVSVLKKE 188
           Y + +  + V  VL K+
Sbjct: 167 YSK-RELSKVEKVLNKQ 182


>gi|218899590|ref|YP_002448001.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842]
 gi|228902949|ref|ZP_04067090.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 4222]
 gi|226725433|sp|B7IIT3|RUVA_BACC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218542616|gb|ACK95010.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842]
 gi|228856733|gb|EEN01252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 4222]
          Length = 205

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 16/194 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A +++ +LKGK   L+ VV         D    ++++     +      A+ AL  LGY 
Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDTERFDEKKGTSAELD----EALEALRALGYA 171

Query: 174 QDQATTAVVSVLKK 187
           + + +  V  +LK+
Sbjct: 172 EREVSRVVPELLKE 185


>gi|297566125|ref|YP_003685097.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946]
 gi|296850574|gb|ADH63589.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946]
          Length = 193

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  +KG      E+ V++ V G    ++CP  TL+ L + G+   L  +  +R+D + L
Sbjct: 1   MVRYLKGTALRKTENSVILLVGGFGLEVFCPTTTLTHLPEEGEIA-LHTKLVVREDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF      + F +L  V GVG +V + +LS ++   L  ++   + +++    G+  K+
Sbjct: 60  YGFADQRSLELFEMLLGVSGVGPKVGLNLLSSLSPALLARALADGDIRLLTGAQGVGRKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+GK      V    M     E   I   P     A  ALV LG+ ++Q  +A
Sbjct: 120 AERIALELRGK------VPPHLMG----EAGPILRRPQTE-EAELALVTLGFRENQVRSA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++++    A   +IIRLAL+A+
Sbjct: 169 VAQIVQQNPE-ASTQEIIRLALKAL 192


>gi|169836412|ref|ZP_02869600.1| Holliday junction DNA helicase, subunit A [candidate division TM7
           single-cell isolate TM7a]
          Length = 192

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I   +   ++IDV G+ Y ++  +     +  +G+    +   H+R+    L
Sbjct: 1   MIAHVRGKISEKFNGSIIIDVNGLGYELFVSVVDFDLV-NLGESVKFYTYHHVREQSEEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F +L SVQGVG + A+ +LS      +  +I   N+  I +  G+  K 
Sbjct: 60  FGFSTLSAKKIFEMLISVQGVGPKAALAILSLGNVETVRNAIANSNAGFIQKASGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L  K + L +  +     +   Q +          A+ AL+ LGY    A+ A
Sbjct: 120 ADRVVVDLHDK-VGLPTKYENSNEIIENNQLNSSD------EAVEALMALGYTLADASEA 172

Query: 181 VVSV 184
           + ++
Sbjct: 173 LKNI 176


>gi|329942438|ref|ZP_08291248.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10]
 gi|332287079|ref|YP_004421980.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|325507386|gb|ADZ19024.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|328815348|gb|EGF85336.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10]
 gi|328914313|gb|AEB55146.1| Holliday junction DNA helicase RuvA [Chlamydophila psittaci 6BC]
          Length = 207

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++++ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 1   MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 61  LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q  +     +      PS     I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLADLLPLDSQITASWGPAK------PSCMEEGIQALAALGYPKSSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +   + +  + A  ++I+ +AL+
Sbjct: 175 MIAEAMSELPDHASIAEILPIALK 198


>gi|116327800|ref|YP_797520.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331541|ref|YP_801259.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122280714|sp|Q04RG9|RUVA_LEPBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122284404|sp|Q053A8|RUVA_LEPBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116120544|gb|ABJ78587.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125230|gb|ABJ76501.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 212

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 21/219 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTL-FVETH-MRQDQI 58
           MI  +KG ++ L   Y  I+  G+ Y +    +T   L  +     + F   H M +   
Sbjct: 1   MISGLKGTLKKLEVGYAHIETGGITYEVTISFKTYLELKSLPSHNEVQFQIFHAMNERGQ 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +LFGFL++ D+++F +++ +QG+G   A+ +LS  +A EL        +K + +IP +  
Sbjct: 61  KLFGFLTEQDKEFFKVIKGLQGIGELTALKILSFFSAEELYRIAQSGEAKELEKIPKVKG 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------------AISA 166
           K + +I  E+K     L       +S  +KE +   S+ SF+              AI  
Sbjct: 121 KTSEKIFFEVKQNLKKLELF----LSGTSKEPS--ISLSSFSETPEEAALSRKREIAILG 174

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           LV LG+ +  A+  V  +LK   +  D  +IIR  L+++
Sbjct: 175 LVQLGFEEKTASKEVDKILKS-SSPTDPGEIIREILKSL 212


>gi|218905615|ref|YP_002453449.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
 gi|218536299|gb|ACK88697.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
          Length = 541

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 16/194 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A +++ +LKGK   L+ VV         D    ++++     +      A+ AL  LGY 
Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDEERFDEKKGSSAELD----EALEALRALGYA 171

Query: 174 QDQATTAVVSVLKK 187
           + + +  V  +LK+
Sbjct: 172 EREVSRVVPELLKE 185


>gi|30264491|ref|NP_846868.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames]
 gi|42783552|ref|NP_980799.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987]
 gi|47566611|ref|ZP_00237433.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241]
 gi|47778316|ref|YP_021298.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187311|ref|YP_030563.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Sterne]
 gi|49481508|ref|YP_038471.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141085|ref|YP_085744.1| Holliday junction DNA helicase motor protein [Bacillus cereus E33L]
 gi|65321787|ref|ZP_00394746.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Bacillus anthracis str. A2012]
 gi|118479576|ref|YP_896727.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871987|ref|ZP_02216628.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488]
 gi|167636186|ref|ZP_02394490.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442]
 gi|167640739|ref|ZP_02398999.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193]
 gi|170688710|ref|ZP_02879915.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465]
 gi|170709117|ref|ZP_02899544.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389]
 gi|177653948|ref|ZP_02935989.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174]
 gi|190567070|ref|ZP_03019986.1| Holliday junction DNA helicase RuvA [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034433|ref|ZP_03101842.1| Holliday junction DNA helicase RuvA [Bacillus cereus W]
 gi|196039270|ref|ZP_03106576.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99]
 gi|196044806|ref|ZP_03112040.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108]
 gi|206976012|ref|ZP_03236922.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97]
 gi|217961912|ref|YP_002340482.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187]
 gi|225866402|ref|YP_002751780.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102]
 gi|227817199|ref|YP_002817208.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC
           684]
 gi|229141160|ref|ZP_04269701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST26]
 gi|229602821|ref|YP_002868707.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248]
 gi|254684176|ref|ZP_05148036.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724653|ref|ZP_05186436.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A1055]
 gi|254736523|ref|ZP_05194229.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741561|ref|ZP_05199248.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Kruger
           B]
 gi|254751340|ref|ZP_05203377.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Vollum]
 gi|254757672|ref|ZP_05209699.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Australia 94]
 gi|301055929|ref|YP_003794140.1| holliday junction DNA helicase motor protein [Bacillus anthracis
           CI]
 gi|33301601|sp|Q81LG8|RUVA_BACAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81394735|sp|Q6HDA5|RUVA_BACHK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81409055|sp|Q730B1|RUVA_BACC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81686087|sp|Q634C3|RUVA_BACCZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230517|sp|A0RJ27|RUVA_BACAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725435|sp|B7HQI0|RUVA_BACC7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766941|sp|C3P9A8|RUVA_BACAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766942|sp|C3L6V0|RUVA_BACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766943|sp|C1ESW5|RUVA_BACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|30259149|gb|AAP28354.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames]
 gi|42739481|gb|AAS43407.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987]
 gi|47552021|gb|AAT33773.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47556641|gb|EAL14973.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241]
 gi|49181238|gb|AAT56614.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Sterne]
 gi|49333064|gb|AAT63710.1| holliday junction DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974554|gb|AAU16104.1| Holliday junction DNA helicase, subunit A [Bacillus cereus E33L]
 gi|118418801|gb|ABK87220.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis
           str. Al Hakam]
 gi|164712277|gb|EDR17813.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488]
 gi|167511311|gb|EDR86697.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193]
 gi|167528407|gb|EDR91175.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442]
 gi|170125969|gb|EDS94869.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389]
 gi|170667396|gb|EDT18154.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465]
 gi|172081003|gb|EDT66081.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174]
 gi|190562061|gb|EDV16030.1| Holliday junction DNA helicase RuvA [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992975|gb|EDX56934.1| Holliday junction DNA helicase RuvA [Bacillus cereus W]
 gi|196024294|gb|EDX62967.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108]
 gi|196029897|gb|EDX68498.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99]
 gi|206745764|gb|EDZ57161.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97]
 gi|217066649|gb|ACJ80899.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187]
 gi|225789206|gb|ACO29423.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102]
 gi|227004034|gb|ACP13777.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC
           684]
 gi|228642323|gb|EEK98613.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST26]
 gi|229267229|gb|ACQ48866.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248]
 gi|300378098|gb|ADK07002.1| holliday junction DNA helicase motor protein [Bacillus cereus
           biovar anthracis str. CI]
 gi|324328324|gb|ADY23584.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 205

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 16/194 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A +++ +LKGK   L+ VV         D    ++++     +      A+ AL  LGY 
Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDEERFDEKKGSSAELD----EALEALRALGYA 171

Query: 174 QDQATTAVVSVLKK 187
           + + +  V  +LK+
Sbjct: 172 EREVSRVVPELLKE 185


>gi|206969835|ref|ZP_03230789.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134]
 gi|228954705|ref|ZP_04116728.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229180697|ref|ZP_04308037.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           172560W]
 gi|206735523|gb|EDZ52691.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134]
 gi|228602842|gb|EEK60323.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           172560W]
 gi|228805032|gb|EEM51628.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 205

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A +++ +LKGK   L+ VV         D    ++ +     +      A+ AL  LGY 
Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDTERFDENKGSSAELD----EALEALRALGYA 171

Query: 174 QDQATTAVVSVLKK 187
           + + +  V  +LK+
Sbjct: 172 EREVSRVVPELLKE 185


>gi|242310193|ref|ZP_04809348.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pullorum MIT 98-5489]
 gi|239523490|gb|EEQ63356.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pullorum MIT 98-5489]
          Length = 192

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           MI  ++G I       + I   GV Y ++  ++T + + +  G+  TL     +R+D   
Sbjct: 1   MIIALQGEIFFKEPTRIAIKCAGVIYEVFISLQTSNQITQTKGENLTLLTTHIIREDAQI 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL + +++ F  L  + GVG +VAM +LS  T     + +   + K + ++PGI  K
Sbjct: 61  LFGFLENNEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL G ++ LS   Q + +       H           + AL +LGY  D    
Sbjct: 121 SAGRILVELSGWSLELS---QTNQTIKEDSTLH---------QVVLALESLGYKNDIIQK 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + K E       Q+++ AL+ I
Sbjct: 169 AIKGLEKDEV-----GQMVKAALKKI 189


>gi|259046890|ref|ZP_05737291.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC
           49175]
 gi|259036513|gb|EEW37768.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC
           49175]
          Length = 195

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   + G +  +    ++IDV GV Y  +   P R    L K      + V+  +R+D I
Sbjct: 1   MYEYLNGELAHILPTAIVIDVHGVGYQVVFANPYRLQDSLKKQ---IKVLVQQVVREDSI 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF+S  +R+ F  L SV G+G + AM +L+       V ++   N   + + PG+  
Sbjct: 58  TLYGFISSEERELFQRLISVSGIGPKSAMSILANDDTEGFVNAVESGNVTYLTKFPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           K A +I+ +LKGK  +L    +   + V+  QA +         A  AL+ LGY
Sbjct: 118 KTAQQIILDLKGKFEALPE--ETTKAVVSTNQATLE-------EAKEALLGLGY 162


>gi|81427980|ref|YP_394979.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp.
           sakei 23K]
 gi|90135183|sp|Q38YR0|RUVA_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78609621|emb|CAI54667.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 203

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 15/178 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   +KG +  +   YV+++VQG+ Y +    P R    + ++     +FV   +R   I
Sbjct: 1   MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEV---VQIFVHQAVRDTDI 57

Query: 59  RLFGFLSDLD-RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            LFGF  DLD +Q F  L SV G+G + A+ +L+    + L+++I+  +   + + PG+ 
Sbjct: 58  TLFGFY-DLDEKQLFQKLISVSGIGPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM---PSFAINAISALVNLGY 172
            K A +I  +LKGK   L    +Q  + V +    + S    P  + +A++AL  LGY
Sbjct: 117 KKTAQQIALDLKGKLGDL----EQSATLVGQTAIDLGSQGDSPELS-DALAALSALGY 169


>gi|163942171|ref|YP_001647055.1| Holliday junction DNA helicase motor protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229560002|sp|A9VIP7|RUVA_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163864368|gb|ABY45427.1| Holliday junction DNA helicase RuvA [Bacillus weihenstephanensis
           KBAB4]
          Length = 205

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 94/190 (49%), Gaps = 8/190 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQA 177
           A +++ +LKGK   L+ VV      +  +     +    ++    A+ AL  LGY + + 
Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREV 175

Query: 178 TTAVVSVLKK 187
           +  V  +LK+
Sbjct: 176 SRVVPELLKE 185


>gi|307153472|ref|YP_003888856.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822]
 gi|306983700|gb|ADN15581.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822]
          Length = 209

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQIRLFGFLSDLDRQWFML 74
           ++++V  + Y I  P R    L  + D  T+ + TH+  R+DQ  L+GF +  +R  F  
Sbjct: 22  LILEVNQIGYEIQIPSRLARKL-TLDDDQTIQIFTHLQIREDQQILYGFATSEERDLFRQ 80

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           L SV GVGA+ A+ ++  +   ELV +I+  N + +A+ PGI  K A RI+ ELK K
Sbjct: 81  LISVSGVGAQSAIALIDTLGLEELVRAIMSNNGRTLAKSPGIGPKTAERILLELKTK 137


>gi|317495143|ref|ZP_07953513.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424]
 gi|316914565|gb|EFV36041.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424]
          Length = 192

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG I  +    ++ID  G+ Y I    P        ++ +   +++   +R+D  
Sbjct: 1   MYAYIKGKISEINPTNIVIDNNGIGYEITVANPYEY-----QLNEEKQIYISQQVREDSN 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFL+   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q+   + + PGI  
Sbjct: 56  TLYGFLTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDVNYLTKFPGIGK 115

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A +I+ +L+GK I  ++   +  S  N           +  +A+ AL  LGY   +  
Sbjct: 116 KSAQQIILDLQGK-IDFNTAANKTESLAN----------LYIKDALLALEALGYSTKELA 164

Query: 179 TAVVSVLKKEKNIADD 194
                + K E +  DD
Sbjct: 165 KIESRLAKFEFSAVDD 180


>gi|225847962|ref|YP_002728125.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644479|gb|ACN99529.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 181

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 34/210 (16%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG I  + ++ ++++  G    I  P        K  D  T++    +++++IR+
Sbjct: 1   MLEFIKGKIVKVDKNKIIVEKDGFGIKINVPDSE-----KFSDEDTVYTILKVKEEEIRV 55

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISM 118
            GF +  +++ F  L  + GVG + A+ +L   +  E ++  IL  S V  + ++ GI  
Sbjct: 56  IGFKTQEEKELFNKLTQIHGVGEKHALAILGHFSIDEFID--ILDQSDVDSLTKVQGIGK 113

Query: 119 KIASRIMTELKGKA-ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           K A RI+ ELKGK   S +S++Q                     + +  L NLG+ ++Q+
Sbjct: 114 KTAQRIIVELKGKVDFSENSLIQ---------------------DFVKTLTNLGFDKEQS 152

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207
              V  +LK++ N+ +   I++ A+  +S 
Sbjct: 153 YKVVRKLLKEDNNVEN---ILKKAISTLSS 179


>gi|328465569|gb|EGF36798.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 1816]
          Length = 175

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 4/172 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGY 168


>gi|184154991|ref|YP_001843331.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO
           3956]
 gi|227514529|ref|ZP_03944578.1| crossover junction endoribonuclease subunit A [Lactobacillus
           fermentum ATCC 14931]
 gi|260663386|ref|ZP_05864277.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum
           28-3-CHN]
 gi|229560093|sp|B2GB19|RUVA_LACF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183226335|dbj|BAG26851.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO
           3956]
 gi|227087086|gb|EEI22398.1| crossover junction endoribonuclease subunit A [Lactobacillus
           fermentum ATCC 14931]
 gi|260552238|gb|EEX25290.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum
           28-3-CHN]
          Length = 200

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 1/145 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +  D++++DV GV Y +       +          +F+   +++D I L
Sbjct: 1   MFEYLTGLITMVSPDFIVVDVNGVGYRVAV-ANPYAYQEDDQQAVQVFIYQAVKEDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G + A+ +L+      L+++I   + K +++ PGI  K 
Sbjct: 60  FGFATQAEKRLFTQLIGVSGIGPKSALAILATPDHQGLIDAIQNGDDKYLSKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145
           ASRI+ ELK K +++   VQ D + 
Sbjct: 120 ASRIIIELKDKVVAVQDEVQLDFTA 144


>gi|331002346|ref|ZP_08325864.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330410162|gb|EGG89596.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 196

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 26/213 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58
           MI  IKG +     D ++++  G+ Y ++   R +  + K  +   + + T++R   D  
Sbjct: 1   MIAYIKGIVTEKNTDSIIVECSGLGYEVFTCGRDIQSVSKTDE---ILIYTYLRISDDAH 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFL+  D   F  L  + GVG + A+ ++S + + +L  +I+  + K I+   GI  
Sbjct: 58  TLYGFLNKDDLLMFKKLLGISGVGPKAALSIMSTLGSFDLKMAIVSDDYKAISAAQGIGQ 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDM-----SCVNKEQAHICSMPSFAINAISALVNLGYG 173
           KIA RI+ +LK K + L S++  D+     S V  E A              AL++LGY 
Sbjct: 118 KIAKRIILDLKEK-VDLGSILVSDIDNTADSTVQTETAQ-------------ALISLGYS 163

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +A   + S+  K+ +  +D  ++++AL+ ++
Sbjct: 164 SSEAYKVLKSMDIKDSDKVED--VLKIALKKMA 194


>gi|229013638|ref|ZP_04170769.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides DSM 2048]
 gi|229169164|ref|ZP_04296879.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH621]
 gi|228614392|gb|EEK71502.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH621]
 gi|228747697|gb|EEL97569.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides DSM 2048]
          Length = 212

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 8/186 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF 
Sbjct: 12  VTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFK 69

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A ++
Sbjct: 70  TREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQM 129

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQATTAV 181
           + +LKGK   L+ VV      +  +     +    ++    A+ AL  LGY + + +  V
Sbjct: 130 ILDLKGK---LADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVV 186

Query: 182 VSVLKK 187
             +LK+
Sbjct: 187 PELLKE 192


>gi|237752874|ref|ZP_04583354.1| holliday junction DNA helicase motor protein [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375141|gb|EEO25232.1| holliday junction DNA helicase motor protein [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 193

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 23  GVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
           GV Y ++  ++T   +   IG+   L     +R+D   LFGFL  L++  F  L  + GV
Sbjct: 23  GVVYEVFISLQTSQQIQANIGEKLALHTTQIIREDAQMLFGFLELLEKTLFERLIKINGV 82

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141
           G +VAM +LS  T     + +   + K + ++PGI  K A RI+ EL G ++ L   VQ 
Sbjct: 83  GPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPKSAGRILVELSGWSLDL---VQG 139

Query: 142 DMSCVNKE---QAHICSMPSFAI-NAISALVNLGYGQDQATTAVVSVLKK 187
           +   V K+   Q  I ++ S    N + A V  G   D+ +  V + LK+
Sbjct: 140 ESLNVKKDSNLQQVILALESLGYKNDVIARVTKGLENDEVSAMVKAALKR 189


>gi|254525561|ref|ZP_05137613.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536985|gb|EEE39438.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9202]
          Length = 225

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 82/141 (58%), Gaps = 13/141 (9%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVE 50
           MI  I G +  +++     +VLI+ QG+ Y I      +  ++T     K     TL+++
Sbjct: 1   MISWINGELVEIWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKN---ITLWIK 57

Query: 51  THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110
              ++D   LFGF S   + +F+ + SV+G+G+++ M +L++ + +E++++I  Q+ K+I
Sbjct: 58  YIKKEDSDLLFGFASKDQKFFFIEILSVRGIGSQIGMSILNKFSISEIIKAIKTQDKKLI 117

Query: 111 AQIPGISMKIASRIMTELKGK 131
             +PGI  K++ R++ ELK K
Sbjct: 118 CSVPGIGQKMSDRLILELKSK 138


>gi|313890377|ref|ZP_07824008.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121220|gb|EFR44328.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 197

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++V G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGQLTKITAKYIVVEVNGLGYIIYVA-NPYSFTDSVNQNVTVYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +      QQ  S   +   H          AI AL+ LGY
Sbjct: 120 AQQMILDLAGKFVDNPEPGQQ-QSQAKRNSNHQLD------EAIEALLALGY 164


>gi|29839888|ref|NP_828994.1| Holliday junction DNA helicase motor protein [Chlamydophila caviae
           GPIC]
 gi|33301629|sp|Q824M5|RUVA_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29834235|gb|AAP04872.1| Holliday junction DNA helicase RuvA [Chlamydophila caviae GPIC]
          Length = 207

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I+ P R L  L G++     ++  T +R+ +  
Sbjct: 1   MYDYIRGILTYMSSGTLVIECQGLGFNIFAPDRWLIELSGQLHREVVVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F +L S  GVG +  + +L+  + ++L      ++ + IA +PGI  K
Sbjct: 61  LYGFSSRRERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDVRAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  ++  D   +   ++     PS     I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQK---LPDLLPLDSKAIASWES---VKPSCMDEGIQALAALGYSKPSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +   + +    A  ++I+ +AL+
Sbjct: 175 MIAEAMSELPENASLAEILPIALK 198


>gi|6729740|pdb|1BVS|A Chain A, Ruva Complexed To A Holliday Junction.
 gi|6729741|pdb|1BVS|B Chain B, Ruva Complexed To A Holliday Junction.
 gi|6729742|pdb|1BVS|C Chain C, Ruva Complexed To A Holliday Junction.
 gi|6729743|pdb|1BVS|D Chain D, Ruva Complexed To A Holliday Junction.
 gi|6729744|pdb|1BVS|E Chain E, Ruva Complexed To A Holliday Junction.
 gi|6729745|pdb|1BVS|F Chain F, Ruva Complexed To A Holliday Junction.
 gi|6729746|pdb|1BVS|G Chain G, Ruva Complexed To A Holliday Junction.
 gi|6729747|pdb|1BVS|H Chain H, Ruva Complexed To A Holliday Junction
          Length = 203

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 19/193 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  G+ Y +      L+ L + G    L     +R+D + L
Sbjct: 1   MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLNQ-GSQARLVTAMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F+ L SV GVG R+AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRG 119

Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ EL  K     A  L+     D + V               + + ALV LG+   
Sbjct: 120 AERIVLELADKVGPVGASGLTVGTAADGNAVRG-------------SVVEALVGLGFAAK 166

Query: 176 QATTAVVSVLKKE 188
           QA  A   VL  E
Sbjct: 167 QAEEATDQVLDGE 179


>gi|145628663|ref|ZP_01784463.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
 gi|144979133|gb|EDJ88819.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
          Length = 124

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKK 119


>gi|239939964|ref|ZP_04691901.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL
           15998]
 gi|239986448|ref|ZP_04707112.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL
           11379]
 gi|291443395|ref|ZP_06582785.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           roseosporus NRRL 15998]
 gi|291346342|gb|EFE73246.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           roseosporus NRRL 15998]
          Length = 208

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGKEARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFRDDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGK 131
           A +++ ELK +
Sbjct: 120 AQKLLLELKDR 130


>gi|269219375|ref|ZP_06163229.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211168|gb|EEZ77508.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 196

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 105/205 (51%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G++  +     +I+  GV Y +     TL+ L ++G     FV T +  R+D +
Sbjct: 1   MIAALRGSVLSVEPTAAVIEAGGVGYAVQATPATLAGL-RVGQEA--FVHTSLVVREDSM 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF    +R+ F +LQ+V GVG ++A+ +L+ +T   L +++   +   + ++ G+  
Sbjct: 58  TLFGFADADEREVFDVLQTVSGVGPKLALTILATLTPDRLRQAVANADIAALTRVSGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ E+  K   L      D+           S  + + + ++ALV LG+ +  A 
Sbjct: 118 KGAQRLVLEIGAK---LGPRRGGDLEA--------PSSNARSGDVVAALVGLGFSERDAE 166

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
           +A  S ++K    A+  +++R +L+
Sbjct: 167 SA-FSQVEKATPEAEVPELLRASLK 190


>gi|87302215|ref|ZP_01085040.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           5701]
 gi|87283140|gb|EAQ75096.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           5701]
          Length = 221

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G++   ++      +L+   GV Y +    R    L   G    L+    +R D
Sbjct: 1   MIGWLQGHVAEPWQQGNRCGLLLACAGVGYEVQLTRRHWELLPPAGSPLCLYTHQSIRDD 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF +  +R  F LL +V GVG ++A+ +L  +   ELV +I+  + + + + PG+
Sbjct: 61  GWTLFGFGARHERDLFRLLVAVSGVGPQMALALLGTMPCEELVRAIVQADLRRLCRAPGV 120

Query: 117 SMKIASRIMTELKGK 131
             + A R+  EL+GK
Sbjct: 121 GKRTAERLAVELRGK 135


>gi|268317861|ref|YP_003291580.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252]
 gi|262335395|gb|ACY49192.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252]
          Length = 200

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 65/111 (58%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++DV G+ Y +  P  T   L ++G    L    ++R+D + LFGF ++ +R  F +L 
Sbjct: 17  VVVDVHGLGYRLLIPTSTYEVLPEVGAPVHLLTHYYVREDAVLLFGFATEAERALFEVLL 76

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
            V GVG R+A+  LS ++  ++ E++   + + + +IPG+  ++A R++ E
Sbjct: 77  GVSGVGPRLALAALSALSPAQIHEAVTTGDVQTLKRIPGVGQRLAERLIVE 127


>gi|295396081|ref|ZP_06806264.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971022|gb|EFG46914.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 194

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQI 58
           MI  ++G +  +  + + +   GV   ++    T +  G++  G    L  E  +R+D +
Sbjct: 1   MIRYLEGTVHTVSANSLTVVTSGVGREVFV---TPAVAGRVRTGSEVALHTELIVREDAL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF +  + + F  L    GVG ++A+ +LS ++  ++  +I     KV+  +PG+  
Sbjct: 58  TLYGFDTPSELKLFSTLLGANGVGPKLALAILSVLSPDQVYGAISDNTPKVLTAVPGVGP 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+A++++ +L+GK  + S+V        + E              + ALV LG+ +  A 
Sbjct: 118 KVAAKLIVDLQGKVPATSAVPSSGAGPASAE-------------VVQALVGLGWKEATAI 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            AV +V   E   A  + +++ ALR
Sbjct: 165 KAVEAV-APEMGQASVADMLKAALR 188


>gi|218244912|ref|YP_002370283.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801]
 gi|257057937|ref|YP_003135825.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802]
 gi|226725438|sp|B7JZG7|RUVA_CYAP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218165390|gb|ACK64127.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801]
 gi|256588103|gb|ACU98989.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802]
          Length = 210

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 24/208 (11%)

Query: 1   MIGKIKGN-IEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM-- 53
           MI  +KGN IE L        ++++V  V Y +  P R    L +     TL V TH+  
Sbjct: 1   MISYLKGNPIETLKNTQNRILLILEVNQVGYEMQIPSRFARELSQ-NPRETLQVFTHLQV 59

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           + +Q  L+GF +  +R+ F  L SV G+GA++A+ ++  +   ELV++I+  N + ++Q 
Sbjct: 60  KDEQPILYGFATAAERELFRQLVSVSGIGAQLAIALIDTLGLEELVQAIVNGNIRTLSQT 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLG 171
           PG+  K A RI  ELK K       + Q    V        ++PS  +  +    L+ LG
Sbjct: 120 PGVGQKTAERIALELKTK-------LSQWRKLVGITLPSTSAIPSLEVLEDVEMTLLALG 172

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIR 199
           Y  ++   A+ +       ++ D+Q+++
Sbjct: 173 YTNEEINKAIST-------LSQDNQMLK 193


>gi|228993160|ref|ZP_04153082.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           pseudomycoides DSM 12442]
 gi|228999210|ref|ZP_04158791.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock3-17]
 gi|229006757|ref|ZP_04164391.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock1-4]
 gi|228754618|gb|EEM04029.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock1-4]
 gi|228760555|gb|EEM09520.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock3-17]
 gi|228766619|gb|EEM15260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           pseudomycoides DSM 12442]
          Length = 212

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 95/190 (50%), Gaps = 16/190 (8%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           + G +E +  +YV++D  G+ Y I+ P        +      ++   ++R+D + L+GF 
Sbjct: 12  VTGYVEYVGPEYVVLDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFK 69

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A ++
Sbjct: 70  TREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQM 129

Query: 125 MTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           + +LKGK   L+ VV         D+   ++++     +      A+ AL  LGY + + 
Sbjct: 130 ILDLKGK---LADVVPDAFVDLFSDVERFDEKKGSSAELD----EALEALRALGYAEREV 182

Query: 178 TTAVVSVLKK 187
           +  V  +LK+
Sbjct: 183 SRVVPELLKE 192


>gi|261368084|ref|ZP_05980967.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM
           15176]
 gi|282570074|gb|EFB75609.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM
           15176]
          Length = 201

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 18/197 (9%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           D  +I   GV Y +  P  T   L   G   T++   ++ ++ + L+GF ++  R  F +
Sbjct: 15  DTAVISCGGVGYAVQIPATTGEALPAPGQEGTVYTVMNVSENDVSLYGFATEEQRDCFKM 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK---GK 131
           L +V GVG +  + +LS ++  ++  +    + K   +  G+  K+A RI  ELK   GK
Sbjct: 75  LTAVSGVGPKAGLAILSVMSPEKIALAASSGDHKAFTKASGVGPKLAQRITLELKDKVGK 134

Query: 132 AIS-LSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATTAVVSVLKKEK 189
            ++  +     D+S           MPS A   A++ALV+LGY    A  AV  V  +  
Sbjct: 135 GLADGTGFGGADLS---------APMPSSAPAQAVAALVSLGYTPSDAAAAVARV-DETL 184

Query: 190 NIADDSQIIRLALRAIS 206
           ++ D   II++ALR++S
Sbjct: 185 SVQD---IIKVALRSLS 198


>gi|254246308|ref|ZP_04939629.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184]
 gi|124871084|gb|EAY62800.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184]
          Length = 164

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 21/179 (11%)

Query: 31  PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
           P+ T   L + G+   L  +  +R+D   L+GFL+  +R  F  L  + G+GAR+A+ VL
Sbjct: 2   PMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAVL 61

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150
           S ++  EL +++ +Q++  + ++PGI  K A R++ ELKGK  +    +    S  +   
Sbjct: 62  SGMSVQELAQAVTMQDAARLTRLPGIGKKTAERLLLELKGKLGADLGALAGAASASD--- 118

Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206
                    A + ++AL+ LGY + +   A+       KN+      S+ I+LAL+A+S
Sbjct: 119 --------HATDILNALLALGYSEKEGLAAI-------KNVPAGTGVSEGIKLALKALS 162


>gi|320093778|ref|ZP_08025625.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319979279|gb|EFW10775.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 199

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 12/183 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +E +  D V++   GV + +         L + GD   +     +R+D + L
Sbjct: 1   MIALLRGVVESIGLDQVVVSAGGVGFGVRVTPAHAQSLTR-GDEAVVHTAMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+G + A+  L+ +   +L  ++  Q+   + +IPG+  K 
Sbjct: 60  YGFASADERDVFERLMGVTGIGPKTALAALAVLRPDDLRRAVRDQDIATLQKIPGVGRKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--ISALVNLGYGQDQAT 178
           A R+  E+ GK   L +  Q        EQ    + P+  + A   +ALV LG+ + QA 
Sbjct: 120 AQRMALEVGGK---LGAPAQL------PEQGGPAAAPAGEVEAEVRAALVGLGWSEAQAA 170

Query: 179 TAV 181
            AV
Sbjct: 171 KAV 173


>gi|295425862|ref|ZP_06818542.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064465|gb|EFG55393.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           amylolyticus DSM 11664]
          Length = 197

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 13/195 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           M   + G I  +   Y+++DV GV Y ++ P       G+      ++VE +   +    
Sbjct: 1   MFEYLDGTIAEISPSYIVVDVNGVGYKVFSPTPFAYHQGQK---AKVYVEQNFSDNNGFT 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF     +  F+ L SV G+G + A+ +++   +  L E+I     K + + PG+  K
Sbjct: 58  LYGFQDKNAKGLFLKLLSVSGIGPKSALAIMAAEDSDSLAEAIEQGEVKYLTRFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            AS+I+ +LKGK   L   V + D +  + E+      P    +A+ AL+ LGY Q +  
Sbjct: 118 TASQIVLDLKGK---LGDYVNRLDRTVADNEEIS----PELH-DALLALIALGYTQKEVN 169

Query: 179 TAVVSVLKKEKNIAD 193
                + K + + AD
Sbjct: 170 RITPKLEKIDTDSAD 184


>gi|257866610|ref|ZP_05646263.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC30]
 gi|257872874|ref|ZP_05652527.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC10]
 gi|257800568|gb|EEV29596.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC30]
 gi|257807038|gb|EEV35860.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC10]
          Length = 196

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 100/203 (49%), Gaps = 24/203 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G +  ++  Y++++  G+ Y I       S  GK+     +++   +R+D   L+GF + 
Sbjct: 7   GKVTDIFPAYIVVETHGIGYQIAFG-NPYSFSGKLNQEVKIYLHQVIREDAHSLYGFATI 65

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
             +Q F+ L SV G+G + A+ +++    T L+ ++   +   + + PG+  K A +++ 
Sbjct: 66  EGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKTAQQMIL 125

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVL 185
           +LKGK   L          V +E     S+ + A++ A+ AL  LGY + +       V 
Sbjct: 126 DLKGKVAEL----------VGEEAIVPLSVATTALDEAMEALKALGYSEKE-------VK 168

Query: 186 KKEKNIADDS-----QIIRLALR 203
           K EK +A+++     + +R ALR
Sbjct: 169 KAEKQLAENTTKSTDEYLREALR 191


>gi|300870312|ref|YP_003785183.1| Holliday junction DNA helicase RuvA [Brachyspira pilosicoli
           95/1000]
 gi|300688011|gb|ADK30682.1| holliday junction DNA helicase, RuvA [Brachyspira pilosicoli
           95/1000]
          Length = 194

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 43  DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102
           D   L+ +   ++D + L+GF +  +++ F  L S  GVGA++AM VLS  +  E++  +
Sbjct: 41  DNIRLYTQLIHKEDSMTLYGFKTREEKKMFNTLMSASGVGAKLAMEVLSTYSIDEIMHIL 100

Query: 103 ILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
             ++  ++ ++ G+ +K A +++ E++ K   +   +       N+ ++ +         
Sbjct: 101 FNKDINMLKKVQGMGVKKAEKLLFEIRDKIEKIDINISSSKISYNENESDV--------- 151

Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
            I AL++LG+  ++A  A+ ++  KE    +D  +I LALR +S 
Sbjct: 152 -IKALISLGFSNNEAVKALSNIENKENKTTED--LISLALRNLSS 193


>gi|229086983|ref|ZP_04219140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-44]
 gi|228696359|gb|EEL49187.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-44]
          Length = 205

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 16/194 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV++D  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVLDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A +++ +LKGK   L+ VV         D+   ++++     +      A+ AL  LGY 
Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDVERFDEKKGSSAELD----EALEALRALGYA 171

Query: 174 QDQATTAVVSVLKK 187
           + +    +  +LK+
Sbjct: 172 EREVNRVIPELLKE 185


>gi|327394173|dbj|BAK11595.1| Holliday junction DNA helicase RuvA [Pantoea ananatis AJ13355]
          Length = 175

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 34  TLSCLGKIGDF---CTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
            ++C  ++ D      +F +  +R+D   LFGF S  +R  F  L  V GVG ++A+ +L
Sbjct: 2   PMTCFYELPDLNHEAVIFTQFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAIL 61

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150
           S ++A + V ++  +    + ++PG+  K A R++ E+K +   +      D+   +   
Sbjct: 62  SGMSAQQFVTAVEKEEIAALVKLPGVGKKTAERLVVEMKDRFKGMHG----DLFGGDSAF 117

Query: 151 AHICSMPSFAIN-----AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                 P    N     A++ALV+LGY   +A+  +  V + +   AD   +IR ALRA
Sbjct: 118 TLTTPGPEPETNDAESEAVAALVSLGYKPQEASRMISKVGRPD---ADCETLIREALRA 173


>gi|254431586|ref|ZP_05045289.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001]
 gi|197626039|gb|EDY38598.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001]
          Length = 214

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 4/133 (3%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G+I   ++      +L+  +GV Y +    R    L   G    L +   +R+D
Sbjct: 1   MIGWLQGDIADPWQHDKRCGLLLLCRGVGYEVQVSQRDWRRLPPPGSPLALHIHQSIRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  F  L +V GVG ++AMG+L  +   ELV++I+  + + + Q PG+
Sbjct: 61  AWTLYGFTARQERDLFRDLVAVSGVGPQMAMGLLGALEMEELVQAIVQPDLRRLCQAPGV 120

Query: 117 SMKIASRIMTELK 129
             + A R+  EL+
Sbjct: 121 GKRTAERLAVELR 133


>gi|329767086|ref|ZP_08258614.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341]
 gi|328837811|gb|EGF87436.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341]
          Length = 193

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 25/184 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG I  +    +++D  G+ Y  ++  P        ++ +   +F+   +R+D  
Sbjct: 1   MYAYIKGKISEINPTNIVVDNNGIGYEVVVANPYEY-----QLNEEKIVFISQQVREDSN 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF +   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q+   + + PGI  
Sbjct: 56  ILYGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVNYLTKFPGIGK 115

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS----ALVNLGYGQ 174
           K A +I+ +L+GK          D S  N     I S P+   N +S    AL  LGY +
Sbjct: 116 KSAQQIILDLQGKV---------DFSMTN-----ISSAPTAVNNYLSDAMLALEALGYSK 161

Query: 175 DQAT 178
            + T
Sbjct: 162 KELT 165


>gi|317508678|ref|ZP_07966333.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252999|gb|EFV12414.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC
           BAA-974]
          Length = 199

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 11/191 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G    +  D+V+++  G+ Y ++  P  + + +   GD   L     +R+D   
Sbjct: 1   MIASVRGEAVEVGADHVVVECAGLGYHVVVLP--STAAMAARGDELRLVTSFIVREDAQT 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF     R  F +L++V GVG ++AM VLS +   +L  +I   +   + ++PG+  +
Sbjct: 59  LYGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPAQLRRAIGEGDLAALTRVPGVGKR 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A R+  ELK K       V   +    K  A   S        +  LV LG+    A +
Sbjct: 119 VAERLALELKEK-------VGVGVGATGKPGAPEGSA-LVRQQVVDGLVGLGFALKPAES 170

Query: 180 AVVSVLKKEKN 190
           A  SVL ++++
Sbjct: 171 AADSVLAEDQD 181


>gi|283954372|ref|ZP_06371893.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794171|gb|EFC32919.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 183

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 28/185 (15%)

Query: 23  GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           G+ Y I+    +L C  KI   +    F+   +++D  + +GFL   +++ F +L  V G
Sbjct: 24  GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           VGA  AM V S +      +++ L +  V+ ++PGI  K A RI+ EL    + L + V 
Sbjct: 81  VGANTAMAVCSSLDVNSFYKALSLSDESVLKKVPGIGPKSAKRIIVELSDTNMKLEN-VS 139

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
            D S                  A++AL+ LG+ Q++    ++SVL   + I   S++I+ 
Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASSQAIG-TSELIKE 177

Query: 201 ALRAI 205
           ALR +
Sbjct: 178 ALRKL 182


>gi|104774420|ref|YP_619400.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|300811568|ref|ZP_07092052.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|123251847|sp|Q1G940|RUVA_LACDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|103423501|emb|CAI98403.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|300497428|gb|EFK32466.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 197

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L+GF S  D+  F  L
Sbjct: 16  YVVIEVAGIGYRILTPT---PYAYKDGDKARIYVEQVVRENGMTLYGFKSQQDKVLFNKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
             V G+G + A+ +++      L  +I       + + PGI  K AS+I+ +L+GK   +
Sbjct: 73  NEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKTASQIVLDLRGK---M 129

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
            + V +++     E   + S+     +A+ AL  LGY Q +    +   LKK   ++ D 
Sbjct: 130 GNYVAENLFT---EDEPVKSVFPALEDALLALGALGYSQKEVDR-IKPKLKKLPEMSADE 185

Query: 196 QI 197
            I
Sbjct: 186 YI 187


>gi|325685740|gb|EGD27818.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 197

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L+GF S  D+  F  L
Sbjct: 16  YVVIEVAGIGYRILTPT---PYAYKDGDKARIYVEQVVRENGMTLYGFKSQQDKVLFNKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
             V G+G + A+ +++      L  +I       + + PGI  K AS+I+ +L+GK   +
Sbjct: 73  NEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKTASQIVLDLRGK---M 129

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
            + V +++     E   + S+     +A+ AL  LGY Q +    +   LKK   ++ D 
Sbjct: 130 GNYVAENLFT---EDEPVKSVFPALEDALLALGALGYSQKEVDR-IKPKLKKLPEMSADE 185

Query: 196 QI 197
            I
Sbjct: 186 YI 187


>gi|126656681|ref|ZP_01727895.1| Holliday junction DNA helicase motor protein [Cyanothece sp.
           CCY0110]
 gi|126621901|gb|EAZ92609.1| Holliday junction DNA helicase motor protein [Cyanothece sp.
           CCY0110]
          Length = 212

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           ++++V  + Y I  P +    + +   D   +F    ++ DQ  L+GF +  +R+ F  L
Sbjct: 22  LVLEVNQIGYEIQIPSKLARDISQEKLDIIQVFTHLQIKDDQQILYGFFTTAERELFRQL 81

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            SV G+GA+ A+ ++  +   ELV++I+  N ++++Q PGI  K A RI  EL+ K    
Sbjct: 82  ISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQTPGIGKKTAERIALELRTK---- 137

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSV 184
              + Q    V        +MPS  I  +    L+ LGY  ++   A+ ++
Sbjct: 138 ---LSQWRKLVGVTVTSSSAMPSLEILEDIEMTLLALGYTNEEINKAISTL 185


>gi|317488563|ref|ZP_07947108.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA]
 gi|316912305|gb|EFV33869.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA]
          Length = 197

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +         I+V GV Y +     +LS L + G    +     +R D + L
Sbjct: 1   MIAFLKGVLAAKTATTAFIEVNGVGYAVGMSQASLSKLPEAGAAVEVHTFLQVRDDGLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  ++  F  L  V GVG +VA+  LS  +   LV ++  Q+   + +IPG+  K 
Sbjct: 61  FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG          + ++ +  E A   +  +       AL+++G+  ++A  A
Sbjct: 121 ASRIILELKGS-------FDEGLAGLFDEAAPAVASAANLAGTREALLSMGFTSEEADVA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
               LK     A +S +++ AL+ +  
Sbjct: 174 ----LKGAPEGAAESVLLQYALKRLGT 196


>gi|118467715|ref|YP_887263.1| Holliday junction DNA helicase RuvA [Mycobacterium smegmatis str.
           MC2 155]
 gi|166230568|sp|A0QWH5|RUVA_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118169002|gb|ABK69898.1| holliday junction DNA helicase RuvA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 195

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+    R  F+ L  V GVG ++A+  L+      L +++   +   + ++PGI  + 
Sbjct: 60  YGFVDGDARDLFLTLLGVSGVGPKIALATLAVYDPQALRQALADGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K           +  V+          +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDK-----------IGPVSAGGGAAVGGHAIRGPVVEALVGLGFAAKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
              VL  +   A  S  +R AL
Sbjct: 169 TDKVLANDPE-ATTSSALRAAL 189


>gi|224532061|ref|ZP_03672693.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116]
 gi|224511526|gb|EEF81932.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116]
          Length = 196

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 37  CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL   K+ D   LF   + R+++++LFGFL+  +R+ F  L  V G+G R A+ VLS I 
Sbjct: 34  CLANFKLSDKVELFTYLYTRENELKLFGFLNSDERETFKGLIGVSGIGPRAALRVLSNIR 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             E  ++I  ++ +++A+I GI  K+A ++   L+GK + +++ ++ ++    + +  I 
Sbjct: 94  YNEFKDAIDREDVELVAKIKGIGKKMAGKMFLHLQGKLL-INNELESNLFRFKELEESII 152

Query: 155 SM 156
           SM
Sbjct: 153 SM 154


>gi|229032072|ref|ZP_04188054.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1271]
 gi|228729264|gb|EEL80259.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1271]
          Length = 197

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      +F   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVFTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV      +  +          ++    A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDTERFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE 177


>gi|116617732|ref|YP_818103.1| Holliday junction resolvasome, DNA-binding subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122272067|sp|Q03YJ2|RUVA_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116096579|gb|ABJ61730.1| Holliday junction DNA helicase subunit RuvA [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 196

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +   Y++I  + GV Y +Y   P R    +        ++V+  +R++ 
Sbjct: 1   MYEYINGLITNITPSYIVIASRSGVGYRLYSANPYRFEENVE-----SHVYVQQIVREND 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I L+GF+   ++  F  L +V G+G + A+ +L+   A  L+ ++   N   + Q PG+ 
Sbjct: 56  ISLYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVG 115

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +I+ +LKGK   L+S      S  N EQ+          +A+ AL+ LGY   + 
Sbjct: 116 KKTAQQIVLDLKGKLDELASKTGMVDSSSNPEQSQALD------DALEALLALGYTA-KD 168

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
             AV  ++ +  +  D    IR AL+
Sbjct: 169 VKAVAQIIGRNSDTTD--GYIRSALK 192


>gi|229076052|ref|ZP_04209023.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-18]
 gi|229098895|ref|ZP_04229831.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-29]
 gi|229105059|ref|ZP_04235711.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-28]
 gi|229117921|ref|ZP_04247283.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-3]
 gi|228665578|gb|EEL21058.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-3]
 gi|228678369|gb|EEL32594.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-28]
 gi|228684568|gb|EEL38510.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-29]
 gi|228707086|gb|EEL59288.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-18]
          Length = 197

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D+   ++++     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDVESFDEKKGSSVELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|325832047|ref|ZP_08165144.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1]
 gi|325486368|gb|EGC88820.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1]
          Length = 205

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 68/130 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G       I+V GV Y +     +LS L + G    +     +R D + L
Sbjct: 1   MIAFLKGTLAGKTATTAYIEVNGVGYAVGMSQASLSKLPEAGAPVEVHTFLQVRDDALAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L  V GVG +VA+  LS  +   LV ++  Q+   + +IPG+  K 
Sbjct: 61  YGFLALEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120

Query: 121 ASRIMTELKG 130
           ASRI+ ELKG
Sbjct: 121 ASRIILELKG 130


>gi|229019645|ref|ZP_04176455.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1273]
 gi|229025883|ref|ZP_04182279.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1272]
 gi|228735435|gb|EEL86034.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1272]
 gi|228741648|gb|EEL91838.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1273]
          Length = 197

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D+   ++++     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDVESFDQKKGSSVELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|116514518|ref|YP_813424.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274750|sp|Q048Y6|RUVA_LACDB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116093833|gb|ABJ58986.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126230|gb|ADY85560.1| Helicase Holliday junction [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 197

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L+GF S  D+  F  L
Sbjct: 16  YVVIEVAGIGYRILTPT---PYAYKEGDKARIYVEQVVRENGMTLYGFKSQQDKVLFNKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
             V G+G + A+ +++      L  +I       + + PGI  K AS+I+ +L+GK   +
Sbjct: 73  NEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKTASQIVLDLRGK---M 129

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
            + V +++     E   + S+     +A+ AL  LGY Q +    +   LKK   ++ D 
Sbjct: 130 GNYVAENLFT---EDEPVESVFPALEDALLALGALGYSQKEVDR-IKPKLKKLPEMSADE 185

Query: 196 QI 197
            I
Sbjct: 186 YI 187


>gi|89898693|ref|YP_515803.1| Holliday junction DNA helicase RuvA [Chlamydophila felis Fe/C-56]
 gi|123749524|sp|Q252Y0|RUVA_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89332065|dbj|BAE81658.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56]
          Length = 207

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I    R L  L G +     ++  T +R+ +  
Sbjct: 1   MYDYIRGILTYMSSGTMVIECQGLGFSICASDRWLMELAGLLHREVIVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F +L S  GVG +  + +L+    ++L      ++ K +A +PGI  K
Sbjct: 61  LYGFRSRGERECFRMLISFSGVGPKTGLAILNTFALSKLCSIARAEDVKALASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q ++     +      PS   + I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLPELLPLDSQTLTSWKPAK------PSCMEDGIQALAALGYPKSSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +   + +  + A  ++I+ +AL+
Sbjct: 175 MIAEAITELPDNASLAEILPIALK 198


>gi|329769669|ref|ZP_08261073.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325]
 gi|328838424|gb|EGF88033.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325]
          Length = 192

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 91/180 (50%), Gaps = 18/180 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG I  +    +++D  G+ Y  ++  P        ++ +   +F+   +R+D  
Sbjct: 1   MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEY-----QLEEEKQIFISQQVREDSN 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF +   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q++  + + PGI  
Sbjct: 56  TLYGFSTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDAVYLTKFPGIGK 115

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A +I+ +L+GK +  ++      +  N+          +  +A+ AL  LGY + + T
Sbjct: 116 KSAQQIILDLQGK-VDFAATASTPNNNANQ----------YLKDALLALEALGYSKKELT 164


>gi|224436530|ref|ZP_03657539.1| Holliday junction DNA helicase RuvA [Helicobacter cinaedi CCUG
           18818]
 gi|313143033|ref|ZP_07805226.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           cinaedi CCUG 18818]
 gi|313128064|gb|EFR45681.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           cinaedi CCUG 18818]
          Length = 195

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 13/189 (6%)

Query: 19  IDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           IDV GV Y +   +   S L G+ G    +     +R+D   LFGF+ ++++Q F  L  
Sbjct: 19  IDVGGVIYGVQMSLNATSKLRGEGGKEVKIICTQIIREDSHLLFGFVEEIEKQTFERLIK 78

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           + GVG +VA+ +LS  T  E  + I  ++   + ++PGI  K A +IM ++ G    L S
Sbjct: 79  INGVGPKVALAILSTYTPMEFAKIISNKDVDALKKVPGIGAKGAGKIMVDVAGFFAGLIS 138

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
               D S  + + +   S+ +    A+ AL +LG+    A  A+  +          S++
Sbjct: 139 ----DTSLADGKLSQENSLKN---EALLALQSLGFKNTDAQKALQGI-----EAQSVSEL 186

Query: 198 IRLALRAIS 206
           ++LAL+ ++
Sbjct: 187 VKLALKKLA 195


>gi|15618530|ref|NP_224816.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae
           CWL029]
 gi|15836152|ref|NP_300676.1| Holliday junction DNA helicase motor protein [Chlamydophila
           pneumoniae J138]
 gi|16752420|ref|NP_444679.1| Holliday junction DNA helicase motor protein [Chlamydophila
           pneumoniae AR39]
 gi|33241977|ref|NP_876918.1| Holliday junction DNA helicase motor protein [Chlamydophila
           pneumoniae TW-183]
 gi|6685955|sp|Q9Z7T4|RUVA_CHLPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|4376917|gb|AAD18759.1| Holliday Junction Helicase [Chlamydophila pneumoniae CWL029]
 gi|7189062|gb|AAF38010.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae AR39]
 gi|8978992|dbj|BAA98827.1| holliday junction helicase [Chlamydophila pneumoniae J138]
 gi|33236487|gb|AAP98575.1| RuvA [Chlamydophila pneumoniae TW-183]
 gi|269302404|gb|ACZ32504.1| holliday junction DNA helicase RuvA [Chlamydophila pneumoniae
           LPCoLN]
          Length = 207

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  ++   ++I+ QG+ Y I    R  + C+  +     +F     R+ +  
Sbjct: 1   MYDYIRGTLTYVHTGAIVIECQGIGYHIAITERWAIECIRALHQDFLVFTHVIFRETEHL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F +L S  G+G ++A+ +L+ +    L   +  ++ + +A + GI  K
Sbjct: 61  LYGFHSREERECFRILISFSGIGPKLALAILNALPLKVLCSVVRSEDIRALASVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M ELK K   L  ++  D S V   Q H  S  S     I AL  LGY +  A  
Sbjct: 121 TAEKLMVELKQK---LPDLLPLD-SRVETSQTHTTS--SCLEEGIQALAALGYSKIAAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +   +K     +  + I+ +AL+
Sbjct: 175 MIAEAIKDLPEGSSLTDILPIALK 198


>gi|227510189|ref|ZP_03940238.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513117|ref|ZP_03943166.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC
           11577]
 gi|227083692|gb|EEI19004.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC
           11577]
 gi|227190394|gb|EEI70461.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 198

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 13/201 (6%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62
           + G I  +   Y+++ V G+ Y+IY   P R      K      ++V   +    I L+G
Sbjct: 5   MDGQIVDITPAYIVLLVNGIGYLIYTADPYRFNVDQNKT---IRVYVYQSVSDSAILLYG 61

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           F    D++ F  L +V G+G + A+ +L+    + LV +I  ++ K + + PG+  K A 
Sbjct: 62  FYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVSAISNKDVKFLTKFPGVGKKTAQ 121

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           +I+ +L+GK   LS +VQ        EQ+          +AISAL  LGY   Q   A+ 
Sbjct: 122 QIILDLQGKVGDLSQIVQARSGQSASEQSDELR------DAISALEALGYSAKQ-IDAIR 174

Query: 183 SVLKKEKNIADDSQIIRLALR 203
             L K+K +  D + + L L+
Sbjct: 175 LELGKDKALTTD-EYLSLGLK 194


>gi|257784697|ref|YP_003179914.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469]
 gi|257473204|gb|ACV51323.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469]
          Length = 210

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 13/189 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  +     ++DV GV Y +     T + L + G+   T+     +R+D + 
Sbjct: 1   MIVQLTGTLVSVTPSVAVLDVNGVGYELGISASTAAALPQAGEAGVTVLTRMVVREDSME 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  +R  F  L+++ GVG ++A+ VLS  T  +L   +   +   +  + G+  K
Sbjct: 61  LFGFASREERALFDRLRAISGVGPKLALSVLSTFTPQQLAVIVATNDGNRLKSVSGLGKK 120

Query: 120 IASRIMTELK---GKAISLSSVV----QQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
            A R++ EL     K   L  +V      D + + K      ++ S    AI AL+ +G+
Sbjct: 121 KAERLIIELSDVFAKDTELKQLVGLTSPTDFASIPK-----PTVTSVESEAIEALLGMGF 175

Query: 173 GQDQATTAV 181
              +AT A+
Sbjct: 176 TSQEATLAL 184


>gi|70726280|ref|YP_253194.1| Holliday junction DNA helicase RuvA [Staphylococcus haemolyticus
           JCSC1435]
 gi|90135915|sp|Q4L6Y7|RUVA_STAHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68447004|dbj|BAE04588.1| holliday junction DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 201

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 108/208 (51%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCP--IRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I+G +  L+  +V+++ + GV Y I  P   R    L K      ++    +R+D 
Sbjct: 1   MYAYIRGKLTQLFPTHVVVESINGVGYEIQTPNSYRFQKYLEK---ELVIYTSLIVREDA 57

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF+++ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI 
Sbjct: 58  QLLYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKMAIENENDAYLTKFPGIG 117

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +I+ +LKGK + ++    + +  +N+E ++  ++   A+ A+ A   LGY + + 
Sbjct: 118 KKTARQIVLDLKGK-VQITRETTETLLSMNEENSNSENLVKEALLALEA---LGYSKRE- 172

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
            + V  VL K    + D + ++L L+ +
Sbjct: 173 ISKVEKVLNKSTFDSVD-EAVKLGLKTL 199


>gi|227432395|ref|ZP_03914385.1| crossover junction endoribonuclease subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351834|gb|EEJ42070.1| crossover junction endoribonuclease subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 196

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +   Y++I  + GV Y +Y   P R    +        ++V+  +R++ 
Sbjct: 1   MYEYINGLITNITPSYIVIASRSGVGYRLYSANPYRFEENVE-----SHVYVQQIVREND 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I L+GF+   ++  F  L +V G+G + A+ +L+   A  L+ ++   N   + Q PG+ 
Sbjct: 56  ISLYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVG 115

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +I+ +LKGK   L+S      S  N EQ+          +A+ AL+ LGY   + 
Sbjct: 116 KKTAQQIVLDLKGKLDELASKTGMVDSSSNPEQSQDLD------DALEALLALGYTA-KD 168

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
             AV  ++ +  +  D    IR AL+
Sbjct: 169 VKAVAQIIGRNSDTTD--GYIRSALK 192


>gi|126642622|ref|YP_001085606.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC
           17978]
          Length = 176

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 8/180 (4%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y I  P+ T   L K G   TL+    +R+D  +L+GF    ++  F  L  V GVG ++
Sbjct: 3   YEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQLYGFSDAQEKTIFRTLLKVNGVGPKM 61

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
           A+G+LS ++   LV +I   +   + ++PG+  K A R+M EL+ +     ++ Q   S 
Sbjct: 62  ALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKTAERLMIELRDR---FKTLAQGTSSA 118

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
               Q    S    A  A +AL +LGY   +A  AV +V       AD   IIR AL+++
Sbjct: 119 AALPQIQFVSNSPVA-EAEAALQSLGYKPLEAQKAVAAVKADYTESAD---IIRAALKSM 174


>gi|157736995|ref|YP_001489678.1| Holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018]
 gi|167012656|sp|A8EST5|RUVA_ARCB4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157698849|gb|ABV67009.1| holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018]
          Length = 185

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 24/188 (12%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           ++V GV Y ++    +L+C  KI  D   L +   +R+D   L+GFL   +++ F  +  
Sbjct: 19  VNVNGVIYEVFV---SLNCSSKIVSDDVKLEITHIIREDAQSLYGFLDSNEKKLFDTVIK 75

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           + GVG +VA+ + S  T T   + +   +  ++ ++PGI  K ASRI+ EL G  I    
Sbjct: 76  INGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKGASRILVELSGFIID--- 132

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
                    N E     S  S A+ A  AL +LG+ +D     V SVLK   N ++ S +
Sbjct: 133 --------SNDE----TSGSSSALEAALALESLGFKKD----LVSSVLKTCVN-SNTSDL 175

Query: 198 IRLALRAI 205
           ++ AL+ +
Sbjct: 176 VKEALKKL 183


>gi|323341472|ref|ZP_08081713.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           ruminis ATCC 25644]
 gi|323091083|gb|EFZ33714.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           ruminis ATCC 25644]
          Length = 203

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 21/205 (10%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           G I  ++  Y++++  G+ Y+I    P R  S   K      +++   +R+++I L+GF 
Sbjct: 7   GTITQVFPAYIVVENNGIGYLINVANPFRFKSDETKQ---EKIYLHQIVRENEIVLYGFS 63

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
              ++Q F+ L SV G+G + A+ +L+       V ++   +   + + PGI  K A +I
Sbjct: 64  DFNEKQLFLKLISVSGIGPKSALAILANEDHNGFVSAVNNDDDAYLTKFPGIGKKTAKQI 123

Query: 125 MTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + +LKGK   L S      QQD+  V ++ +       +   A+ AL+ LGY      T 
Sbjct: 124 ILDLKGKLGGLESGKPLKGQQDLEIVAEQTS------PYLKEALEALLALGY----TKTE 173

Query: 181 VVSVLKKEKNIADDS--QIIRLALR 203
           V    +K  +   DS  + +R ALR
Sbjct: 174 VKKTGRKLLDFKGDSTDEYLRQALR 198


>gi|145224407|ref|YP_001135085.1| Holliday junction DNA helicase motor protein [Mycobacterium gilvum
           PYR-GCK]
 gi|315444739|ref|YP_004077618.1| Holliday junction DNA helicase, Ruvsubunit alpha [Mycobacterium sp.
           Spyr1]
 gi|189045758|sp|A4TBQ6|RUVA_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145216893|gb|ABP46297.1| DNA recombination protein RuvA, domain I [Mycobacterium gilvum
           PYR-GCK]
 gi|315263042|gb|ADT99783.1| Holliday junction DNA helicase, RuvA subunit [Mycobacterium sp.
           Spyr1]
          Length = 195

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D   L
Sbjct: 1   MIASVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGSEARLITAMIVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L  V G+G  +A+G L+      L ++I   +   + +IP +  K 
Sbjct: 60  YGFADSDARDLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDLTALTRIPKVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  +   L+ K  S +S      S V     H    P      + ALV LG+   QA  A
Sbjct: 120 AELLALTLRDKVGSSTS------SGVAAAGGHGIRGP-----VVEALVGLGFAVKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
              VL  +   A  S  +R AL
Sbjct: 169 TDKVLANDPE-ATTSSALRAAL 189


>gi|159037423|ref|YP_001536676.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205]
 gi|189045766|sp|A8LXW8|RUVA_SALAI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157916258|gb|ABV97685.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205]
          Length = 200

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +I+V GV   + C   T++ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +  F LLQ+  GVG R+A  VL+  T   +  +I   ++  + ++PGI  K 
Sbjct: 60  YGFADDNAKALFELLQTASGVGPRLAQAVLAVHTPETVRAAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELK 129
           A R++ EL+
Sbjct: 120 AERLVLELR 128


>gi|291301298|ref|YP_003512576.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM
           44728]
 gi|290570518|gb|ADD43483.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM
           44728]
          Length = 200

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +      I V GV   +     TL+ L ++G   TL+    +R+D + L
Sbjct: 1   MIASLTGTVTHVSTSTATITVGGVGMSVRATPGTLANL-RVGGESTLYTTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F LLQ+  GVG R+A   L+      +  +I   ++  + +IPG+  K 
Sbjct: 60  YGFEAPDERDLFELLQTASGVGPRLAQAALAVHPPATVRHAIASGDTATLTRIPGVGKKG 119

Query: 121 ASRIMTELKGK 131
           A R++ ELK K
Sbjct: 120 AERLVLELKDK 130


>gi|183220888|ref|YP_001838884.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910985|ref|YP_001962540.1| Holliday junction specific DNA binding protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|229560095|sp|B0SGZ5|RUVA_LEPBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560096|sp|B0SQF0|RUVA_LEPBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167775661|gb|ABZ93962.1| Holliday junction specific DNA binding protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779310|gb|ABZ97608.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 199

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 18/192 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVET-HMRQDQ- 57
           MI  ++G +  L  D ++++V GV Y +  P    L C  K+     +++ T H   D+ 
Sbjct: 1   MIASLRGKLLQLEIDRLVVEVSGVGYEVMIPFPLHLECKDKLN--TEIYIHTFHSITDRG 58

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            RLFGF S  DR+ F L++S+ G+G   A+ +LS   A +L +     + K + +IP + 
Sbjct: 59  QRLFGFGSKKDRESFELIKSLHGIGELTALKILSFFQADDLYQIAKADDKKTLEKIPKVK 118

Query: 118 MKIASRIMTELKGKAISLSSVVQQ---DMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
            K + +I+ E+K         + +   + S V++E   + ++         AL+ LG+ +
Sbjct: 119 GKTSEKILFEIKQNLKKFEMFLNEGTTESSFVDRE-TDLATL---------ALIQLGFDE 168

Query: 175 DQATTAVVSVLK 186
             AT  V    K
Sbjct: 169 KSATKQVADAKK 180


>gi|315645785|ref|ZP_07898906.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453]
 gi|315278546|gb|EFU41860.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453]
          Length = 178

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAM 87
           ++CP        K     T++   H+R D I LFGF S  +++ F  L  V G+G RVA+
Sbjct: 1   MFCP--NPYAFAKTEGTVTVYTHHHVRDDAILLFGFPSREEQKLFRKLIEVSGIGPRVAL 58

Query: 88  GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           G+L   +   +V +I  +N   + ++PGI  K A R++ +LK K
Sbjct: 59  GILGGGSPDHVVSAIYQENVSFLVKLPGIGKKTAQRMILDLKDK 102


>gi|229081685|ref|ZP_04214180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-2]
 gi|228701689|gb|EEL54180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-2]
          Length = 197

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D    ++++     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|118475489|ref|YP_891982.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp.
           fetus 82-40]
 gi|166230534|sp|A0RP49|RUVA_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118414715|gb|ABK83135.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 184

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I       V I  + GV Y I   + T + L K G+   LF+   +R+D   
Sbjct: 1   MIKAIEGIITKKEPTNVWIKTLSGVSYGISISLFTSASLQK-GEKVELFITQVIREDANL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+ + +++ F +L  V G+GA  AM V S +   E   +++  +  V+ ++PGI  K
Sbjct: 60  LYGFIKESEQRIFEMLLKVNGIGASTAMAVCSSLGPDEFSIAVMNGDDAVLRRVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  ++ +L                  + +   I SMPS+   A  AL +LG+ +D+   
Sbjct: 120 TARTLIAQLS-----------------DAKFGEINSMPSYQNEAFMALESLGFKRDR--- 159

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
             +S +  E +  D + +I+ AL+ ++
Sbjct: 160 --ISKVLNECSSNDTASLIKEALKKLA 184


>gi|149183130|ref|ZP_01861580.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1]
 gi|148849162|gb|EDL63362.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1]
          Length = 202

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G ++ +  +YV+++  G+ Y I+     L    +  +  T++   H+R+D + L
Sbjct: 1   MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKFENQN-TTIYTYQHVREDILAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++  F+ L +V G+G + A+ +L+     +++ +I  ++ + + + PG+  K 
Sbjct: 60  YGFLSMEEKMLFIKLLNVSGIGPKGALAILASGAPEQVISAIEGEDERFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQAT 178
           A +++ +LKGK   L  VV      + +E  H  + +       A  AL  LGY + +  
Sbjct: 120 ARQMILDLKGK---LQDVVPDYFPNLFQEGKHESVSANDELVEEAALALKALGYSEREIK 176

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
                +  ++K      ++I+ AL+
Sbjct: 177 KVTPKLSSQDKTT---DELIKDALK 198


>gi|224534918|ref|ZP_03675487.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S]
 gi|224513858|gb|EEF84183.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S]
          Length = 196

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 40  KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           K+ D   LF   + R+++++LFGFL+  +R+ F  L  V G+G R A+ VLS I   E  
Sbjct: 39  KLSDKVELFTYLYTRENELKLFGFLNSDERETFKRLIGVSGIGPRAALRVLSSIRYNEFK 98

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156
           ++I  ++ +++A+I GI  K+A ++   L+GK + +++ ++  +    + +  I SM
Sbjct: 99  DAIDREDIELVAKIKGIGKKMAGKMFLHLQGKLL-INNELESSLFGFKELEESIVSM 154


>gi|228923173|ref|ZP_04086464.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228941589|ref|ZP_04104137.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228960694|ref|ZP_04122338.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228967497|ref|ZP_04128525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228974518|ref|ZP_04135085.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981112|ref|ZP_04141413.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis Bt407]
 gi|228987674|ref|ZP_04147786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229111893|ref|ZP_04241439.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-15]
 gi|229129701|ref|ZP_04258669.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-Cer4]
 gi|229146992|ref|ZP_04275354.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST24]
 gi|229152624|ref|ZP_04280813.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1550]
 gi|229158036|ref|ZP_04286107.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 4342]
 gi|229175095|ref|ZP_04302612.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           MM3]
 gi|228608391|gb|EEK65696.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           MM3]
 gi|228625489|gb|EEK82245.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 4342]
 gi|228630885|gb|EEK87525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1550]
 gi|228636489|gb|EEK92957.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST24]
 gi|228653818|gb|EEL09688.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-Cer4]
 gi|228671649|gb|EEL26947.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-15]
 gi|228772059|gb|EEM20513.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228778653|gb|EEM26919.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis Bt407]
 gi|228785235|gb|EEM33247.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228792212|gb|EEM39786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228799000|gb|EEM45973.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228818096|gb|EEM64173.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228836552|gb|EEM81902.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 197

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D    ++++     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|229071929|ref|ZP_04205140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           F65185]
 gi|228711225|gb|EEL63189.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           F65185]
          Length = 197

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D    ++++     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDAERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|94984833|ref|YP_604197.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM
           11300]
 gi|122986676|sp|Q1J0F6|RUVA_DEIGD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94555114|gb|ABF45028.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM
           11300]
          Length = 198

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 9/198 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  + E   +I   GV Y ++CP  TL  L   G    L +   +R+D   L
Sbjct: 1   MIAYLSGAVREVREASAVIVAGGVGYEVFCPASTLGRL-VPGQPAELNIRHVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL     + F LL  V GVG ++A+ +LS +  T + + ++  + K+++ + G+  K 
Sbjct: 60  FGFLDTDSLRLFDLLIGVSGVGPKLALSLLSALPVTAVAQGLLSGDVKLLSSVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179
           A R++ EL+ K       V + ++      A   ++ S A  +AI AL+ LG+ + Q  +
Sbjct: 120 AERLVLELQNK-------VPEHLAAGAPVSAGKAALTSTAGRDAIEALLALGFREPQVRS 172

Query: 180 AVVSVLKKEKNIADDSQI 197
            V  +L  +   + D+ I
Sbjct: 173 VVAELLAADPEQSADALI 190


>gi|240173173|ref|ZP_04751831.1| Holliday junction DNA helicase RuvA [Mycobacterium kansasii ATCC
           12478]
          Length = 195

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 13/190 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIAGVRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTEARLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L  ++   +   + ++PGI  + 
Sbjct: 60  YGFGDRETRDLFLTLLSVSGVGPRLAMATLAVHDAAALRRALADGDVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K       V    +       +    P      + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDK-------VGPAGAAAPALNGNAVRTP-----VVEALVGLGFAAKQAEEA 167

Query: 181 VVSVLKKEKN 190
              VL  E  
Sbjct: 168 TDKVLAAEPG 177


>gi|119509314|ref|ZP_01628464.1| Holliday junction DNA helicase motor protein [Nodularia spumigena
           CCY9414]
 gi|119466156|gb|EAW47043.1| Holliday junction DNA helicase motor protein [Nodularia spumigena
           CCY9414]
          Length = 213

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 1   MIGKIKGNIEGLY-----EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+         + ++V  + Y +  P R    L + G    +F    +R 
Sbjct: 1   MISYLKGIVAGIQTIGGGRMMLTLEVNNLGYDLQVPQRLAKQLPESGGVTQIFTHLQIRD 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+G   A+ +L  +   +LV++II  N++++ Q PG
Sbjct: 61  EVPFLYGFASPAERDLFRQLLSVSGIGTACAIALLDTLEVPDLVQAIIAANTQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAIS 134
           +  K A RI  ELK K + 
Sbjct: 121 VGKKTAERICLELKTKLVE 139


>gi|313124267|ref|YP_004034526.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280830|gb|ADQ61549.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 197

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L+GF S  D+  F  L
Sbjct: 16  YVVIEVAGIGYRILTPT---PYAYKDGDKARIYVEQVVRENGMTLYGFKSQQDKVLFNKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
             V G+G + A+ +++      L  +I       + + PGI  K A++I+ +L+GK   +
Sbjct: 73  NEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKTAAQIVLDLRGK---M 129

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
            + V +++     E   + S+     +A+ AL  LGY Q +    +   LKK   ++ D 
Sbjct: 130 GNYVAENLFT---EDEPVKSVFPALEDALLALGALGYSQKEVDR-IKPKLKKLPEMSADE 185

Query: 196 QI 197
            I
Sbjct: 186 YI 187


>gi|255020124|ref|ZP_05292194.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC
           51756]
 gi|254970417|gb|EET27909.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC
           51756]
          Length = 191

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 13/184 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G+I   +  ++ ++V G+ Y +  P+     L   G   TL     +R+D   L
Sbjct: 1   MIAFLRGHILERHPPWLWLEVNGIGYELEMPLSAFFQLPADGAALTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V G+G +VA+  LS +   +L  ++   + + +  IPG+  + 
Sbjct: 61  YGFRERAERDIFRQLIKVSGIGGKVALACLSGMDVEQLRAALRDGDVRRLTAIPGVGART 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  S  SV    ++   +++            AI+AL +LGY    A+ A
Sbjct: 121 AERLIVELRDKLAS-GSVGATPVAGDPRQE------------AIAALQSLGYKATDASQA 167

Query: 181 VVSV 184
           +  +
Sbjct: 168 LAGL 171


>gi|315656670|ref|ZP_07909557.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492625|gb|EFU82229.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 194

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  IKG +     D   + V G+         TL+ L       T  V+T++  R+D +
Sbjct: 1   MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALVP---GTTATVQTYLVVREDSL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S  +R  F  L  V+G+G ++ +  LS ++   L  +++  +   +  IPG+  
Sbjct: 58  TLYGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVVNSDVAALQGIPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ E+  K   +S V     +      + +          + AL NLGY Q  AT
Sbjct: 118 KSAERMILEIGDKLGGVSGVAASTGATAGFNASTV----------VEALSNLGYNQALAT 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            AV +V     + +D    +R AL+
Sbjct: 168 EAVNAV-----SASDAPTALREALK 187


>gi|226355827|ref|YP_002785567.1| Holliday junction DNA helicase RuvA [Deinococcus deserti VCD115]
 gi|226317817|gb|ACO45813.1| putative Holliday junction ATP-dependent DNA helicase ruvA
           [Deinococcus deserti VCD115]
          Length = 202

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 18/203 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQI 58
           +I  + G +  + E+  +I   GV Y + CP  TL  L  G+  +  T FV   +R+D  
Sbjct: 4   VIAYLSGVVREVRENSAVIVAGGVGYEVQCPAGTLGKLVVGQNAELSTRFV---VREDAQ 60

Query: 59  RLFGFLSDLDR-QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            LFGF SD D  + F L+  V GVG ++ + +LS +  + L + ++  + K+++ + G+ 
Sbjct: 61  LLFGF-SDADSLKLFDLVTGVSGVGPKLGLSLLSAMPVSALAQGLMAGDVKLLSSVSGVG 119

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQ 174
            K A R++ EL+ K       V + ++      A   + P   +   +AI AL+ LG+ +
Sbjct: 120 KKTAERLVLELQNK-------VPEHLAAAGVP-AGTRATPVSSTAGRDAIEALLALGFRE 171

Query: 175 DQATTAVVSVLKKEKNIADDSQI 197
            Q    V  +L  +   + D+ I
Sbjct: 172 AQVRGVVAELLGADPTQSADALI 194


>gi|187917906|ref|YP_001883469.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH]
 gi|229560005|sp|B2S1L2|RUVA_BORHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119860754|gb|AAX16549.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH]
          Length = 196

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 15/134 (11%)

Query: 52  HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
           H+R+D+I+LFGFL+  +R+ F  L SV G+G R A+ +LS +   E  ++I  ++ K I+
Sbjct: 51  HLREDEIKLFGFLNVSEREVFEELISVDGIGPRAALRMLSGMKYDEFRDAIEREDVKRIS 110

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
            + GI  K+A +I  +L+GK +    +        + EQ               ++VN+G
Sbjct: 111 TVKGIGNKVAGKIFLKLRGKLVKADELTSSVFKFKDLEQ---------------SIVNMG 155

Query: 172 YGQDQATTAVVSVL 185
           + +     A+  ++
Sbjct: 156 FDRKLVVAAIKEIM 169


>gi|317009536|gb|ADU80116.1| Holliday junction DNA helicase RuvA [Helicobacter pylori India7]
          Length = 183

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 7/149 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+ QGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEAQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           A +IM +L G        +Q + S V  E
Sbjct: 120 ADKIMVDLIG------FFIQDETSPVRNE 142


>gi|254410540|ref|ZP_05024319.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC
           7420]
 gi|196182746|gb|EDX77731.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC
           7420]
          Length = 210

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 8/138 (5%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM-- 53
           MI  +KG +  + +       ++++V  + Y +    R LS   +IG    + V TH+  
Sbjct: 1   MISYLKGTVATIQKGNGNRVTLILEVNQIGYEVQI-TRQLSQEVQIGSEQVVQVFTHLQI 59

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R+DQ  L+GF S  +R  F  L SV G+GA++A+ ++  +    LV++I+  N++ +A+ 
Sbjct: 60  REDQQILYGFASAAERDLFRQLVSVSGIGAQLAIALIDTLGLQNLVQAIVTGNTRTLAKT 119

Query: 114 PGISMKIASRIMTELKGK 131
           PG+  K A RI  ELK K
Sbjct: 120 PGVGSKTAERIALELKTK 137


>gi|260654961|ref|ZP_05860449.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1]
 gi|260630276|gb|EEX48470.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1]
          Length = 200

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--I 58
           M+  ++G +  L     +++  G+ + +    +    L ++G+  ++F++T+++     +
Sbjct: 1   MLASLRGTVILLEGSSAVVECGGLGFQVQLTRKAFG-LCRVGE--SVFLQTYLQVSDAGM 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF    +RQ F LL +V+GVG ++AM VL  ++A E + ++   +SK +  +PGI  
Sbjct: 58  SLFGFADAAERQAFELLTTVKGVGGKLAMTVLQSLSAQETIAAVAAGDSKTLTAVPGIGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A RI  EL  K    S     D++   +    +          I AL +LG+    + 
Sbjct: 118 KTAERICFELSEKITGSSEWSSADLTAKLQHSDEV----------IEALESLGFDHASSV 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            A   + ++    A   + I   LR
Sbjct: 168 RAYQQLCQERGEPASTEEAIFNCLR 192


>gi|222097866|ref|YP_002531923.1| holliday junction DNA helicase ruva [Bacillus cereus Q1]
 gi|228917058|ref|ZP_04080617.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929466|ref|ZP_04092487.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228948135|ref|ZP_04110419.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229093493|ref|ZP_04224596.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-42]
 gi|229123962|ref|ZP_04253154.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           95/8201]
 gi|229163369|ref|ZP_04291321.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           R309803]
 gi|229186660|ref|ZP_04313821.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BGSC 6E1]
 gi|229198549|ref|ZP_04325252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1293]
 gi|221241924|gb|ACM14634.1| holliday junction DNA helicase [Bacillus cereus Q1]
 gi|228584934|gb|EEK43049.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1293]
 gi|228596919|gb|EEK54578.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BGSC 6E1]
 gi|228620150|gb|EEK77024.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           R309803]
 gi|228659264|gb|EEL14912.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           95/8201]
 gi|228689964|gb|EEL43768.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-42]
 gi|228811493|gb|EEM57830.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228830254|gb|EEM75870.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842586|gb|EEM87675.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 197

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D    ++++     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDEERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|229192632|ref|ZP_04319593.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 10876]
 gi|228590939|gb|EEK48797.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 10876]
          Length = 197

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D    ++ +     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDTERFDENKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|257876215|ref|ZP_05655868.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC20]
 gi|325567287|ref|ZP_08143954.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           casseliflavus ATCC 12755]
 gi|257810381|gb|EEV39201.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC20]
 gi|325158720|gb|EGC70866.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           casseliflavus ATCC 12755]
          Length = 196

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 24/203 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G +  ++  Y++++  G+ Y I       S  GK+     +++   +R+D   L+GF + 
Sbjct: 7   GKVTDIFPAYIVVETHGIGYQIAFG-NPYSFSGKLNQEVKIYLHQVIREDAHSLYGFATI 65

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
             +Q F+ L SV G+G + A+ +++    T L+ ++   +   + + PG+  K A +++ 
Sbjct: 66  EGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKTAQQMIL 125

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVL 185
           +LKGK   L          V +E     S+ + A++ A+ AL  LGY + +       V 
Sbjct: 126 DLKGKVAEL----------VGEEAIVPLSVATTALDEAMEALKALGYSEKE-------VK 168

Query: 186 KKEKNIADDS-----QIIRLALR 203
           K EK +A ++     + +R ALR
Sbjct: 169 KAEKQLAANTTKSTDEYLREALR 191


>gi|317057206|ref|YP_004105673.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7]
 gi|315449475|gb|ADU23039.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7]
          Length = 199

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y       TL  +    +  TL+    +R++ + L
Sbjct: 1   MIYSVRGKLIHTESELAVVECSGVGYACKTTFYTLQKIAGESE-VTLYTYLAVRENDVDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F +L +V GVG + A+ +LS  T ++   ++   + K + +  GI  K 
Sbjct: 60  FGFSSQEELRCFKMLITVSGVGPKAALSILSSNTPSQFALTVATGDFKSLTKSKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178
           A RI+ ELK K      + +++   V   +    ++P       AI+ALV LGY + +A 
Sbjct: 120 AQRIVLELKDK------IAKENTISVRGGETIASAVPRGGALDEAITALVVLGYSEGEAA 173

Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202
            A    L   +  A   ++I+ AL
Sbjct: 174 QA----LAGAEPTATVEELIKTAL 193


>gi|261417028|ref|YP_003250711.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373484|gb|ACX76229.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 202

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +      +V+++  GV Y +     T   L + G    L     +R+D + L
Sbjct: 1   MIERIRGVLVQKSPTFVVVECAGVGYGVNISAFTAGKLPEEGAEVILHTNLVVREDSMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  F++L  V GVG ++A  +LS  T  +L+  I   N   + +I G+  K 
Sbjct: 61  FGFADTTEKNLFLMLLEVNGVGPKLAQRILSGSTPADLLNMIASDNKSALGKIKGLGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             ++   LK KA   S+++Q            + ++    + A+ AL  LG     A  A
Sbjct: 121 CEQMTLTLKEKA---SNMLQALGDVEGSGITSVGALTGAKLEAVLALHTLGVKDPAAEKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           VV  ++   + AD + +I  AL+
Sbjct: 178 VVKAVEVLGDGADAAALIPEALK 200


>gi|229135245|ref|ZP_04264043.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST196]
 gi|228648223|gb|EEL04260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST196]
          Length = 197

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 88/176 (50%), Gaps = 8/176 (4%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV      +  +     +    ++    A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVVPELLKE 177


>gi|327403822|ref|YP_004344660.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis
           DSM 16823]
 gi|327319330|gb|AEA43822.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis
           DSM 16823]
          Length = 192

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 98/203 (48%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       ++I+  GV Y +   + T S +    +   +  +  +R+D   L
Sbjct: 1   MITHLNGRLIEKNPTNLIIECGGVGYFVKISLNTFSAISST-ESVKVLTQQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV G+G   A+ +LS ++ +E+  +I  ++ + I  I GI  K 
Sbjct: 60  YGFATSEERDIFNFLLSVSGIGPNTAILMLSSMSPSEIANAIQTEDVRSIQAIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +      ++   N              +A++AL++LG+ +  A  A
Sbjct: 120 AQRVIIDLKDKMLKVEWTESTNIFAGNNTN---------RFDALTALISLGFDKKNAEKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  +   ++++ D   +I+ AL+
Sbjct: 171 IEKIATGDESVED---LIKGALK 190


>gi|221194792|ref|ZP_03567849.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626]
 gi|221185696|gb|EEE18086.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626]
          Length = 211

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  +    V++DV GV Y +     T + L + G+   T+     +R+D + 
Sbjct: 1   MIVQLTGTLLSVSPSLVVLDVNGVGYELGVSANTAASLPQAGEAGVTVLTRMVVREDAME 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L+++ G+GA++A+ VLS  T  +L   +  ++   + Q+ G+  K
Sbjct: 61  LYGFSSREERALFDRLRAISGIGAKLALSVLSTFTPQQLASVVASEDVTRMTQVAGLGKK 120

Query: 120 IASRIMTEL 128
            A R++ EL
Sbjct: 121 KAGRMLVEL 129


>gi|328881167|emb|CCA54406.1| Holliday junction DNA helicase RuvA [Streptomyces venezuelae ATCC
           10712]
          Length = 210

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV   + C   TL+ L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGVGMAVQCTPGTLAGL-RIGADARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L   +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRVAVATGDEKALTAVPGIGKKG 119

Query: 121 A 121
           A
Sbjct: 120 A 120


>gi|229062116|ref|ZP_04199441.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH603]
 gi|228717268|gb|EEL68943.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH603]
          Length = 197

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D    + ++     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDTESFDAKKGSSVELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|51598286|ref|YP_072474.1| Holliday junction DNA helicase RuvA [Borrelia garinii PBi]
 gi|81610281|sp|Q662Y9|RUVA_BORGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|51572857|gb|AAU06882.1| Holliday junction DNA helicase [Borrelia garinii PBi]
          Length = 196

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 37  CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL   K+ D   LF   + R+++++LFGFL+  +R+ F  L  V G+G R A+ VLS I 
Sbjct: 34  CLANFKLSDKVELFTYLYARENELKLFGFLNSDERETFKSLIGVSGIGPRAALRVLSNIR 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
             +  E+I  ++ +++++I GI  K+A ++   L+GK +
Sbjct: 94  YNDFKEAIDREDVELVSKIKGIGKKMAGKMFLHLQGKLL 132


>gi|1620916|emb|CAA70096.1| specificity factor of RuvAB helicase [Borrelia burgdorferi]
          Length = 178

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 37  CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL    + D   LF   + R+++++LFGFL+  +R+ F  L  V GVG R A+ VLS I 
Sbjct: 15  CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRAALRVLSNIR 74

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             E  E+I  ++ +++++I GI  K+A ++   L+GK +  S +    +    + +  I 
Sbjct: 75  YNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 134

Query: 155 SM 156
           SM
Sbjct: 135 SM 136


>gi|293567841|ref|ZP_06679182.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071]
 gi|291589426|gb|EFF21233.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071]
          Length = 200

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 12/190 (6%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R  S   K+     ++V   +R+D   L+GF S  ++Q F+
Sbjct: 16  YIVVETNGIGYQIALGNPYRYSS---KLNQKIKIYVHQVIREDAHLLYGFDSLEEKQLFL 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L SV G+G + A+ +++    + L++++   +   + + PG+  K A +++ +LKGK  
Sbjct: 73  RLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFG 132

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
            LS  +    S  ++      +  S A+ A+SA   LGY  D+    V   LKK  N   
Sbjct: 133 ELS--IDTPFSLFDEANTKDATALSEAMEALSA---LGYS-DREIKRVEKQLKKVDNQTT 186

Query: 194 DSQIIRLALR 203
           D + +R AL+
Sbjct: 187 D-EYLRQALK 195


>gi|319790481|ref|YP_004152114.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans
           HB-1]
 gi|317114983|gb|ADU97473.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans
           HB-1]
          Length = 190

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59
           M+  + G + G  +  V +        +  P R L  L + G   TL+ E    Q+   +
Sbjct: 1   MVEAVSGTVSGKGDGAVFLSCGCFTLRLLVPERLLPELHE-GTHVTLYTELLFPQEGAPQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +R+ F  L  V  VG+R+A+ VLS  +  E V+ +  ++ + ++++PG+  K
Sbjct: 60  LFGFKTREERELFRQLMKVPKVGSRLALAVLSVFSPEEFVKVLEGEDVEALSKVPGLGRK 119

Query: 120 IASRIMTELKGKAIS 134
           ++ R++TELKGK +S
Sbjct: 120 LSRRLITELKGKLVS 134


>gi|228910257|ref|ZP_04074075.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 200]
 gi|228849421|gb|EEM94257.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 200]
          Length = 197

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V+++  ++ K + + PG+  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAVEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D    ++++     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|284929265|ref|YP_003421787.1| Holliday junction DNA helicase subunit RuvA [cyanobacterium UCYN-A]
 gi|284809709|gb|ADB95406.1| Holliday junction DNA helicase, RuvA subunit [cyanobacterium
           UCYN-A]
          Length = 213

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 96/182 (52%), Gaps = 13/182 (7%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMR 54
           MI   KG+   + +D      ++++V  + Y I    +    L  K  D+  +F+    R
Sbjct: 1   MINYFKGSFVEILKDTKNKIVLIMEVNQIGYEIQITSKLEEKLSNKKSDYIQVFIHLQTR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +D   L+GF++ L+++ F  L ++ G+GA++++ +L+ + + +L++++   N K++++ P
Sbjct: 61  EDSQILYGFINKLEQELFRQLININGIGAQLSITLLNTLGSEKLIKAVCSGNVKMLSESP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYG 173
           G+  K A RI+ EL  K + L    +       K + H C+     +  I S+L+ LGY 
Sbjct: 121 GVGKKTAERIILELNSKLLKLIEAFEI------KVELHSCNSSENTLEDITSSLLLLGYD 174

Query: 174 QD 175
           ++
Sbjct: 175 RE 176


>gi|296127494|ref|YP_003634746.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM
           12563]
 gi|296019310|gb|ADG72547.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM
           12563]
          Length = 194

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 109/211 (51%), Gaps = 22/211 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+GN++ + E  + +   GV Y I    + L    K  D   L+ +   ++D + L
Sbjct: 1   MFAFIEGNVQIISEGVIALVCNGVGYEIIVS-KKLEV--KNDDKIRLYTQLIHKEDAMIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +++ F  L +  GVG ++AM +LS  +  +L+  +  ++  ++ ++ G+ +K 
Sbjct: 58  YGFLTREEKKMFSTLIAASGVGPKLAMEILSTYSINDLMHILFNKDINLLKKVQGMGLKK 117

Query: 121 ASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A +++ EL+ K     I++SS   Q+    N  ++ +          I AL++LG+  ++
Sbjct: 118 AEKLLFELRDKIEKIDINISSSSVQN---YNDNESDV----------IKALISLGFSNNE 164

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           A  A+ S+  K+   A+D  +I  ALR +S 
Sbjct: 165 AVKALSSIENKDNMSAED--LISNALRNLSS 193


>gi|325971233|ref|YP_004247424.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp.
           Buddy]
 gi|324026471|gb|ADY13230.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp.
           Buddy]
          Length = 210

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 100/195 (51%), Gaps = 17/195 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG-------DFCTLFVETHM 53
           MI  I G++  + +  V++    V Y++    +T S L  +           T+ +    
Sbjct: 1   MINAIIGDVVRVMDGEVILRAGYVEYMLSVSAQTASKLSNLSLEERRAVRLLTVLIH--- 57

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R+D + LFGF  + +R+ F+ LQ+V G+G++ A+ +LS I+   L +++   N K+++ I
Sbjct: 58  REDSMSLFGFYDEAEREAFLQLQTVSGIGSKQALKILSGISVRNLAQALDTGNLKLLSSI 117

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K   +++  L+        V + + S  N +++   S  S   + I+ALV++GY 
Sbjct: 118 PGIGPKTGQKMILALRDVL-----VFEDEKSKTNGQRSQ--SKASQWSDIITALVDMGYD 170

Query: 174 QDQATTAVVSVLKKE 188
           + +    + S+ ++E
Sbjct: 171 RRKVEEVIDSLSEQE 185


>gi|225552109|ref|ZP_03773049.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1]
 gi|225371107|gb|EEH00537.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1]
          Length = 197

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 37  CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL    + D   LF   + R+++++LFGFL+  +R+ F  L  V GVG R A+ VLS I 
Sbjct: 34  CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRAALRVLSNIR 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             E  E+I  ++ +++++I GI  K+A ++   L+GK +  S +    +    + +  I 
Sbjct: 94  YNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 153

Query: 155 SM 156
           SM
Sbjct: 154 SM 155


>gi|310778214|ref|YP_003966547.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus
           DSM 2926]
 gi|309747537|gb|ADO82199.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus
           DSM 2926]
          Length = 199

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +Y ++D+ G+ Y +   ++T   L  +G+   L++  ++R+D  +L GF  + +R  F +
Sbjct: 15  EYAVVDINGIGYKVNISLKTYEKLV-LGEKTKLYIYNYIREDMFKLIGFAEEKERNLFEI 73

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           L +V G+G  +A+ +LS     ++ + +  ++ K++ ++P + +K A +++ ++K K
Sbjct: 74  LINVNGIGVSLALAILSTFDVEDMRDIVSREDVKLLTKVPKLGIKKAQKLIVDVKDK 130


>gi|216264161|ref|ZP_03436153.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a]
 gi|221217494|ref|ZP_03588965.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a]
 gi|224532548|ref|ZP_03673171.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23]
 gi|224533942|ref|ZP_03674527.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a]
 gi|225549276|ref|ZP_03770249.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a]
 gi|225549747|ref|ZP_03770712.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a]
 gi|226321147|ref|ZP_03796688.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805]
 gi|215980634|gb|EEC21441.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a]
 gi|221192772|gb|EEE18988.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a]
 gi|224512491|gb|EEF82869.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23]
 gi|224512945|gb|EEF83311.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a]
 gi|225369707|gb|EEG99155.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a]
 gi|225370134|gb|EEG99574.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a]
 gi|226233439|gb|EEH32179.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805]
 gi|312148088|gb|ADQ30747.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi JD1]
 gi|312149630|gb|ADQ29701.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi N40]
          Length = 197

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 37  CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL    + D   LF   + R+++++LFGFL+  +R+ F  L  V GVG R A+ VLS I 
Sbjct: 34  CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRAALRVLSNIR 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             E  E+I  ++ +++++I GI  K+A ++   L+GK +  S +    +    + +  I 
Sbjct: 94  YNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 153

Query: 155 SM 156
           SM
Sbjct: 154 SM 155


>gi|219684886|ref|ZP_03539828.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr]
 gi|219671831|gb|EED28886.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr]
          Length = 196

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 37  CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL   K+ D   LF   + R+++++LFGFL+  +R+ F  L  V G+G R A+ VLS I 
Sbjct: 34  CLANFKLSDKVELFTYLYARENELKLFGFLNSDEREIFKSLIGVSGIGPRAALRVLSNIR 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
             E  ++I  ++ +++++I GI  K+A ++   L+GK +
Sbjct: 94  YNEFKDAIDREDVELVSKIKGIGKKMAGKMFLHLQGKLL 132


>gi|15594369|ref|NP_212157.1| Holliday junction DNA helicase RuvA [Borrelia burgdorferi B31]
 gi|195941763|ref|ZP_03087145.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi 80a]
 gi|218249661|ref|YP_002374557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7]
 gi|226322062|ref|ZP_03797587.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26]
 gi|3914937|sp|P70827|RUVA_BORBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725436|sp|B7J0W2|RUVA_BORBZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2687899|gb|AAC66409.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi B31]
 gi|218164849|gb|ACK74910.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7]
 gi|226232652|gb|EEH31406.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26]
          Length = 197

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 37  CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL    + D   LF   + R+++++LFGFL+  +R+ F  L  V GVG R A+ VLS I 
Sbjct: 34  CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRAALRVLSNIR 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             E  E+I  ++ +++++I GI  K+A ++   L+GK +  S +    +    + +  I 
Sbjct: 94  YNEFKEAIDKEDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 153

Query: 155 SM 156
           SM
Sbjct: 154 SM 155


>gi|322412854|gb|EFY03762.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 197

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +     V Q+ S   K Q    S       AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVE----VPQETS---KAQPSTSSNNDELDEAIEALLALGY 164


>gi|227524332|ref|ZP_03954381.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC
           8290]
 gi|227088563|gb|EEI23875.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC
           8290]
          Length = 198

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 13/201 (6%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62
           + G I  +   Y+++ V G+ Y+IY   P R      K      ++V   +    I L+G
Sbjct: 5   MDGQIVDITPAYIVLLVNGIGYLIYTADPYRFNVDQNKT---IRVYVYQSVSDSAILLYG 61

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           F    D++ F  L +V G+G + A+ +L+    + LV +I  ++ K + + PG+  K A 
Sbjct: 62  FYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVLAISNKDVKFLTKFPGVGKKTAQ 121

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           +I+ +L+GK   LS +VQ        EQ+          +AISAL  LGY   Q   A+ 
Sbjct: 122 QIILDLQGKVGDLSQIVQARSGQSASEQSDELR------DAISALEALGYSAKQ-IDAIR 174

Query: 183 SVLKKEKNIADDSQIIRLALR 203
             L K+K +  D + + L L+
Sbjct: 175 LELGKDKALTTD-EYLSLGLK 194


>gi|293395808|ref|ZP_06640090.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
 gi|291421745|gb|EFE94992.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
          Length = 127

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 65/122 (53%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VL++  GV Y ++ P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITALVKLPGVGKKP 120

Query: 121 AS 122
            +
Sbjct: 121 PN 122


>gi|224372976|ref|YP_002607348.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH]
 gi|254767379|sp|B9L9P0|RUVA_NAUPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|223589102|gb|ACM92838.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH]
          Length = 184

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 26/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++GNI       +L+DV  V Y +   + T S +   G F   ++   +++++  L
Sbjct: 1   MIAALRGNIFEKDGGKILLDVNNVIYELNVSMITFSSVNDKGLF---YITEIIKENEYTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F  L  + GVG +VA+ + S  T    ++ I   +   + +IPGI  K 
Sbjct: 58  YGFADKNEKKLFDSLIKLNGVGPKVALAICSTYTPQTFMDIIANHDINALKKIPGIGPKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ E+             +   V +EQ  + +       A+SAL +LG+ ++    A
Sbjct: 118 AKRILMEM------------GEFEVVFEEQNPVFNQ------ALSALESLGFNKNDIVKA 159

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +  K  N+    + I+LAL+ +S
Sbjct: 160 LNGI--KSDNL---EETIKLALKKLS 180


>gi|254383613|ref|ZP_04998963.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp.
           Mg1]
 gi|194342508|gb|EDX23474.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp.
           Mg1]
          Length = 210

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV   + C   T++ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTLAVIEVGGVGMAVQCTPNTIAAL-RVGEPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L   +   L  ++   + + +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRLAVESGDERALTAVPGIGKKG 119

Query: 121 A 121
           A
Sbjct: 120 A 120


>gi|300172987|ref|YP_003772153.1| Holliday junction DNA Helicase RuvA [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887366|emb|CBL91334.1| holliday junction DNA helicase RuvA [Leuconostoc gasicomitatum LMG
           18811]
          Length = 196

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 18/177 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +Y  Y++I D  GV Y ++   P R    +        ++VE  +R+++
Sbjct: 1   MYEYINGLITNIYPAYLVICDRSGVGYKLFVANPYRFEQNVE-----SHVYVEQIVRENE 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I ++GF+ + ++  F  L +V G+G + A+ +L+   +  LV ++   ++  + Q PG+ 
Sbjct: 56  ITMYGFIDENEKILFNKLLNVSGIGPKSALAILASDDSVGLVNAVANDDATYLTQFPGVG 115

Query: 118 MKIASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
            K A +I+ +LKGK   L++ V     +S  N  QA          +A+ AL +LGY
Sbjct: 116 KKTAQQIVLDLKGKLDDLAASVGMTTPVSQPNSNQA--------LSDALEALNSLGY 164


>gi|291533989|emb|CBL07102.1| Holliday junction DNA helicase subunit RuvA [Megamonas hypermegale
           ART12/1]
          Length = 161

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  +  D+  IDV GV Y ++    T + L K+ +   LF    +R+D + L
Sbjct: 1   MIGYLQGKVTYIASDFCFIDVHGVGYRVFISTSTRAQL-KMNEEIKLFTYLSVREDAMLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++ L+   F  L SV  +G +  +G+LS +++ +L+ +I  +   ++   PGI  K 
Sbjct: 60  YGFINQLEYDVFCKLISVSKIGPKAGLGLLSSLSSEKLIWAIQNKQVSLLTNAPGIGKKT 119

Query: 121 ASRIMTELKGKAISLS 136
           A RI+ ELK K   L+
Sbjct: 120 AERIVLELKDKLTELN 135


>gi|260583653|ref|ZP_05851401.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC
           700633]
 gi|260158279|gb|EEW93347.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC
           700633]
          Length = 198

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 93/180 (51%), Gaps = 11/180 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYC-PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   +KG +  +   Y++++  G+ Y I++  P R      K+ +   + ++  +R+D I
Sbjct: 1   MYEYLKGELVAIQPTYIVVENHGIGYQIMFANPYR---IQLKLNEVIRVELQQIVREDSI 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFLSD +++ F  L SV G+G + A+ +L+       ++++   N   + + PG+  
Sbjct: 58  TLYGFLSDEEKELFQKLISVSGIGPKSAVSILANDDVNGFIQAVESGNITYLTKFPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A +I+ +LKGK  ++  VV++  + V +    I  +      A  AL+ LGY   + T
Sbjct: 118 KTAQQIVLDLKGKFTNI--VVEEVATPVVETATGIKQLEE----AREALLGLGYSAKEIT 171


>gi|116490641|ref|YP_810185.1| Holliday junction resolvasome, DNA-binding subunit [Oenococcus oeni
           PSU-1]
 gi|122277175|sp|Q04GA2|RUVA_OENOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116091366|gb|ABJ56520.1| Holliday junction DNA helicase subunit RuvA [Oenococcus oeni PSU-1]
          Length = 194

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YV IDV G+ + ++ P           D  T+F E  +R +QI L+GF +  +R  F  L
Sbjct: 16  YVGIDVNGIGFRVFTPNPYEYNQN---DQTTIFTEQIVRDNQISLYGFKTVKERNLFQKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            +V G+G + A+ +++      L+ ++     K + + PGI  K A +I+ +LKGK    
Sbjct: 73  LNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDF 132

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           S  +   M  + +  A +        +A++ALV LG+
Sbjct: 133 SKNIAP-MKNLLENSAELD-------DALAALVALGF 161


>gi|262197092|ref|YP_003268301.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM
           14365]
 gi|262080439|gb|ACY16408.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM
           14365]
          Length = 210

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       V+++  GV Y +   I TL  L   G+  TL + TH  + ++ L
Sbjct: 1   MIGRLRGTLVEQEGSMVIVECGGVGYEVTVSIHTLQSLPAEGEPVTLRIFTHALESRVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT-ELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R  F LL +V+ VG   A+G+LS  +   E+ E I    +  + ++ G+  K
Sbjct: 61  YGFGSTLERDLFDLLITVKKVGPSSAVGILSAGSGPAEIAEMIANGETSSLTRLRGVGKK 120

Query: 120 IASRIMTELKGK 131
            A  ++ EL+ K
Sbjct: 121 TAEMLVVELREK 132


>gi|308187172|ref|YP_003931303.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans
           C9-1]
 gi|308057682|gb|ADO09854.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans
           C9-1]
          Length = 167

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 45  CTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104
             +F    +R+D   LFGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  
Sbjct: 8   AVIFTHFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEK 67

Query: 105 QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--- 161
           +    + ++PG+  K A R++ E+K +   +             + A   + PS      
Sbjct: 68  EEIASLVKLPGVGKKTAERLVVEMKDRFKGMHG------DLFGGDSAFTLTTPSAEPETN 121

Query: 162 ----NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                A++ALV+LGY   +A+  +  V + +   AD   +IR ALRA
Sbjct: 122 DAESEAVAALVSLGYKPQEASRMISKVGRPD---ADCETLIREALRA 165


>gi|90962101|ref|YP_536017.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           UCC118]
 gi|227891123|ref|ZP_04008928.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC
           11741]
 gi|123391344|sp|Q1WT17|RUVA_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90821295|gb|ABD99934.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118]
 gi|227866997|gb|EEJ74418.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC
           11741]
          Length = 201

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y+++DV GV Y +Y   P +             +FV   +R + I L+GF +  ++Q F+
Sbjct: 16  YIVVDVNGVGYQVYVANPFKYEEDEHAE---QKVFVYQAVRDNDISLYGFKNSSEKQLFL 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L  V G+G + A+ +L+      L+ +I   +   + + PGI  K A +I+ +LKGK  
Sbjct: 73  KLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKTAKQIILDLKGK-- 130

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
            LS V    ++  +     + +   +   ++ AL  LGY + +       + K +    D
Sbjct: 131 -LSDVDSDMLTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRISKKLEKYDGKSTD 189

Query: 194 DSQIIRLALR 203
           D   +R  LR
Sbjct: 190 D--YLRQGLR 197


>gi|227488786|ref|ZP_03919102.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091208|gb|EEI26520.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 200

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 15/189 (7%)

Query: 18  LIDVQGVCYIIYCPIRTLS--CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +I+  GV Y       TL+   LG+ G   T  V   + +  + L+GF  D +R  F  L
Sbjct: 18  VIECGGVGYEFLATAATLAELPLGEDGRVLTTMV---IGEKVVTLYGFAHDSERTMFSQL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
           Q VQG+G ++A+  L+  + +E+  ++   + K +  IPG+  ++A+++   L GK   L
Sbjct: 75  QGVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARMAAKMTAVLDGK---L 131

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
              +  D +      A   +  S  +  ++ALV LG+ +D A  A  +   +E N   D+
Sbjct: 132 DEFI--DSTATTSSAAEPVTGGSETV--VAALVQLGFDEDSANHA--AAWAEESNPGGDT 185

Query: 196 QI-IRLALR 203
              +R AL+
Sbjct: 186 GTNLRHALQ 194


>gi|325001439|ref|ZP_08122551.1| Holliday junction DNA helicase RuvA [Pseudonocardia sp. P1]
          Length = 173

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 34  TLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           T S LG +  G+   L     +R++ + LFGF    +R+ F+LLQ+V G+G R+A+  ++
Sbjct: 2   TPSTLGGLRRGEETRLATTLVVREESLTLFGFADTEERELFLLLQTVSGIGPRLALATIA 61

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            +    L  ++   +  V+ +IPG+  K A R++ EL+ K       V    +      +
Sbjct: 62  VLEPDTLRRALADGDLAVLTRIPGVGRKSAERLVVELRDK-------VTAPAAAPAGATS 114

Query: 152 HICSMPSFAINA--ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
                P   +    + AL+ LG+ Q  A  AV  VL ++ + +  S ++R AL ++
Sbjct: 115 AAAPSPVLGVREQVVEALLGLGFPQRPAEQAVDGVLAEQPDTS-ASGLLRTALSSL 169


>gi|152976839|ref|YP_001376356.1| Holliday junction DNA helicase motor protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|189045741|sp|A7GTA3|RUVA_BACCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152025591|gb|ABS23361.1| Holliday junction DNA helicase RuvA [Bacillus cytotoxicus NVH
           391-98]
          Length = 205

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +Y+++D  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYIVLDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ + + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIENEDERFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +   V  D+    +         +    A+ AL  LGY + +    
Sbjct: 119 ARQMILDLKGKLADVVPDVFVDLFSDEERFDEKKGSSTELDEALEALRALGYAEREINRV 178

Query: 181 VVSVLKK 187
           +  +LK+
Sbjct: 179 LPELLKE 185


>gi|315638160|ref|ZP_07893342.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           upsaliensis JV21]
 gi|315481696|gb|EFU72318.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           upsaliensis JV21]
          Length = 183

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQ 57
           M+  I+G I      + ++  Q GV Y IY    +L C  K+     C L +   +++D 
Sbjct: 1   MVVAIEGIITKKEPTFAVLKTQNGVSYGIYI---SLFCAAKLELHTKCELLITQIIKEDS 57

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            +L+GFL   +++ F +L  V G+GA  AM + S + +    +++ L +  V  ++PGI 
Sbjct: 58  HKLYGFLEKDEQKIFEMLLKVNGIGATTAMAICSSLDSNAFYKALSLNDESVFKKVPGIG 117

Query: 118 MKIASRIMTELKGKAISLSSV 138
            K A RI+ EL    ++ ++V
Sbjct: 118 AKSAKRIIVELSDSKMAFNNV 138


>gi|126654019|ref|ZP_01725852.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905]
 gi|126589493|gb|EAZ83637.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905]
          Length = 206

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 26/188 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56
           M   +KG I  +  +Y++++ QG+ + +  P     RT +   +I      +V  H+R+D
Sbjct: 1   MYDYLKGLITRITPEYIVLEQQGIGWQLNTPNPFAFRTSALEQQI------YVHLHVRED 54

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +   R+ F  L  V G+G + A+ +L+     +++ +I  ++   + + PG+
Sbjct: 55  AQMLYGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGV 114

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--------AISALV 168
             K A +++ +LKGK  SL   ++  +     E      +P F +N        AI AL+
Sbjct: 115 GKKTARQMILDLKGKLGSLLETIE--LPSTEDE------LPLFGVNAYKHELEEAILALM 166

Query: 169 NLGYGQDQ 176
            LGY + +
Sbjct: 167 ALGYSEKE 174


>gi|113952944|ref|YP_730832.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311]
 gi|123031696|sp|Q0I9P0|RUVA_SYNS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113880295|gb|ABI45253.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311]
          Length = 219

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGN-IEGLYE---DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G  IE   +     ++I   GV Y +    R L  L   G  CT+++    R D
Sbjct: 1   MIGWLRGERIEHWSQGGRQGLVIACAGVGYEVQLASRYLQPL-SAGATCTVWIHQVQRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F +L SV G+G +V + +L   +A EL+E+II  + + + Q  G+
Sbjct: 60  GSSLFGFPDRRERDLFRVLISVNGIGPQVGLALLESCSAAELIEAIIDGDLRRLTQAQGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVV---QQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGY 172
             + A R+  EL+ +  + S+       D+S V++       +    +  +   L  LGY
Sbjct: 120 GKRTAERLAVELRDRLGAWSAEKNSDHSDLSLVDRSDLKSLPIEPDPLQDLQLTLSTLGY 179

Query: 173 GQDQATTAVVSVLKKEKNIA--DDSQIIRLALRAIS 206
              +   A+ +V   E+  A  D    +R +LR ++
Sbjct: 180 EDLEIRRAMRAVATGEEVPAANDGDGWLRASLRWLN 215


>gi|227542217|ref|ZP_03972266.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182046|gb|EEI63018.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 200

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 15/189 (7%)

Query: 18  LIDVQGVCYIIYCPIRTLS--CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           +I+  GV Y       TL+   LG+ G   T  V   + +  + L+GF  D +R  F  L
Sbjct: 18  VIECGGVGYEFLATAATLAELPLGEDGRVLTTMV---IGEKVVTLYGFAHDSERTMFSQL 74

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
           Q VQG+G ++A+  L+  + +E+  ++   + K +  IPG+  ++A+++   L GK   L
Sbjct: 75  QDVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARMAAKMTAVLDGK---L 131

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
              +  D +      A   +  S  +  ++ALV LG+ +D A  A  +   +E N   D+
Sbjct: 132 DEFI--DSTATTSSAAEPVTGGSETV--VAALVQLGFDEDSANHA--AAWAEESNPGGDT 185

Query: 196 QI-IRLALR 203
              +R AL+
Sbjct: 186 GTNLRHALQ 194


>gi|67922170|ref|ZP_00515685.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501]
 gi|67856070|gb|EAM51314.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501]
          Length = 210

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 9/140 (6%)

Query: 47  LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106
           +F    +++DQ  L+GF +  +R+ F  L SV G+GA+ A+ ++  +   ELV++I+  N
Sbjct: 53  VFTYLQIKEDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGN 112

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAI 164
            + ++Q PG+  K A RI  EL+ K       + Q    V    A   +MPS  I  +  
Sbjct: 113 IRTLSQTPGVGKKTAERIALELRTK-------LSQWRKLVGGTVASSSAMPSLDILEDIE 165

Query: 165 SALVNLGYGQDQATTAVVSV 184
             L+ LGY  ++   AV ++
Sbjct: 166 MTLLALGYTNEEINKAVSTL 185


>gi|229553780|ref|ZP_04442505.1| crossover junction endoribonuclease subunit A [Lactobacillus
           rhamnosus LMS2-1]
 gi|229312854|gb|EEN78827.1| crossover junction endoribonuclease subunit A [Lactobacillus
           rhamnosus LMS2-1]
          Length = 212

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 73/133 (54%), Gaps = 7/133 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M    +G I+ +   Y++IDV G+ +  ++  P        + G    ++V+  +R++  
Sbjct: 15  MYEYFEGTIQAVTPAYIVIDVNGIGFRLLVANPYDF-----EAGKQTRIYVQLIIRENDQ 69

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF +  D++ F  L SV G+G + A+ +L+ +++  L  +I   + K + + PGI  
Sbjct: 70  TLYGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGK 129

Query: 119 KIASRIMTELKGK 131
           K A++I+ +LKGK
Sbjct: 130 KTAAQIILDLKGK 142


>gi|111114845|ref|YP_709463.1| Holliday junction DNA helicase RuvA [Borrelia afzelii PKo]
 gi|216264081|ref|ZP_03436075.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1]
 gi|123047085|sp|Q0SPE1|RUVA_BORAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110890119|gb|ABH01287.1| Holliday junction DNA helicase [Borrelia afzelii PKo]
 gi|215980125|gb|EEC20947.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1]
          Length = 196

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 37  CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL   K+ D   LF   + ++++++LFGFL+  +R+ F  L  V G+G R A+ VLS I 
Sbjct: 34  CLANFKLLDKVELFTYLYTKENELKLFGFLNSDERETFKSLIGVSGIGPRAALRVLSNIR 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
             E  ++I  ++ ++IA+I GI  K+A ++   L+GK +
Sbjct: 94  YNEFKDAIDREDIELIAKIKGIGKKMAGKMFLHLQGKLL 132


>gi|225851116|ref|YP_002731350.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1]
 gi|225645836|gb|ACO04022.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1]
          Length = 179

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 30/206 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+   +D  +ID+  V      P         + D   +F+E  ++ D++ L
Sbjct: 1   MIEFLKGKIKHKKDDIYIIDLGTVALRFRSP-------SDLKDQSVVFIEMFIKDDRVEL 53

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L S+ GVG + A+ +L   +     E +  ++   +    G+  K 
Sbjct: 54  YGFKTPEEREIFNRLLSINGVGVKHALSILRSFSPERFFEIVENRDITTLTTAQGVGKKT 113

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+GK   + + + +D+                    + AL  LG+ + +  + 
Sbjct: 114 AQRIVLELQGKLDFIENELLKDL--------------------VDALTGLGFDKKRVLSV 153

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              VLK+  N+    + ++LAL+ ++
Sbjct: 154 AKDVLKETDNL---EKALKLALQKLA 176


>gi|315636187|ref|ZP_07891441.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter
           butzleri JV22]
 gi|315479548|gb|EFU70227.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter
           butzleri JV22]
          Length = 185

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 23/169 (13%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           ++V GV Y ++    +L+C  KI  D   L +   +R+D   L+GFL   +++ F  +  
Sbjct: 19  VNVNGVIYEVFV---SLNCSSKIVSDDVKLEITHIIREDAQSLYGFLDSNEKKLFDTVIK 75

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           + GVG +VA+ + S  T T   + +   +  ++ ++PGI  K ASRI+ EL G  I    
Sbjct: 76  INGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKGASRILVELSGFIID--- 132

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
                    N E     S  S A+ A  AL +LG+ +D     V SVLK
Sbjct: 133 --------SNDE----TSGSSSALEAALALESLGFKKD----LVSSVLK 165


>gi|199598072|ref|ZP_03211495.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           rhamnosus HN001]
 gi|258507747|ref|YP_003170498.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
 gi|258538937|ref|YP_003173436.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc
           705]
 gi|84627155|gb|ABC59820.1| RuvA [Lactobacillus rhamnosus GG]
 gi|199590998|gb|EDY99081.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           rhamnosus HN001]
 gi|257147674|emb|CAR86647.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
 gi|257150613|emb|CAR89585.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc
           705]
 gi|259649095|dbj|BAI41257.1| holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
          Length = 198

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 73/133 (54%), Gaps = 7/133 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M    +G I+ +   Y++IDV G+ +  ++  P        + G    ++V+  +R++  
Sbjct: 1   MYEYFEGTIQAVTPAYIVIDVNGIGFRLLVANPYDF-----EAGKQTRIYVQLIIRENDQ 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF +  D++ F  L SV G+G + A+ +L+ +++  L  +I   + K + + PGI  
Sbjct: 56  TLYGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGK 115

Query: 119 KIASRIMTELKGK 131
           K A++I+ +LKGK
Sbjct: 116 KTAAQIILDLKGK 128


>gi|311894864|dbj|BAJ27272.1| putative Holliday junction ATP-dependent DNA helicase RuvA
           [Kitasatospora setae KM-6054]
          Length = 203

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 18/163 (11%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
           C   TL+ L ++G+   L     +R+D + LFGF+ D +R  F +LQ+  GVG ++A  +
Sbjct: 30  CTPATLATL-RVGETARLATSLVVREDSLTLFGFVDDDERATFEVLQAAPGVGPKLAQAI 88

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-AISLSSVVQQDMSCVNK 148
           L   +   L  +I   + K +  +PGI    A++++ E K K      SV  Q       
Sbjct: 89  LGTHSPEALRVAIAGGDEKALIAVPGIGKAKAAKLLLEYKDKLGAPHGSVPAQKPVAAGP 148

Query: 149 ----EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
               EQ H            +ALV LGY   +A  AV  V  +
Sbjct: 149 APWHEQLH------------AALVGLGYAPREAEEAVARVTPE 179


>gi|298346872|ref|YP_003719559.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii
           ATCC 43063]
 gi|304389423|ref|ZP_07371386.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|298236933|gb|ADI68065.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii
           ATCC 43063]
 gi|304327233|gb|EFL94468.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 194

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  IKG +     D   + V G+         TL+ L       T  V+T++  R+D +
Sbjct: 1   MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLATLVP---GTTATVQTYLVVREDSL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S  +R  F  L  V+G+G ++ +  LS ++   L  ++   +   +  IPG+  
Sbjct: 58  TLYGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ E+  K   +S V     +      + +          + AL NLGY Q  AT
Sbjct: 118 KSAERMILEIGDKLGGVSGVAASTGATAGFNASTV----------VEALSNLGYNQALAT 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            AV +V     + +D    +R AL+
Sbjct: 168 EAVNAV-----SASDAPTALREALK 187


>gi|257878807|ref|ZP_05658460.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,230,933]
 gi|257881445|ref|ZP_05661098.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,502]
 gi|257885716|ref|ZP_05665369.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,501]
 gi|257890666|ref|ZP_05670319.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,410]
 gi|257899427|ref|ZP_05679080.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15]
 gi|258615122|ref|ZP_05712892.1| Holliday junction DNA helicase RuvA [Enterococcus faecium DO]
 gi|261207080|ref|ZP_05921769.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6]
 gi|289565918|ref|ZP_06446358.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF]
 gi|293556856|ref|ZP_06675417.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039]
 gi|293563770|ref|ZP_06678209.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162]
 gi|293570773|ref|ZP_06681823.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980]
 gi|294614616|ref|ZP_06694520.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636]
 gi|294618498|ref|ZP_06698062.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679]
 gi|294621205|ref|ZP_06700390.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317]
 gi|314938831|ref|ZP_07846102.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a04]
 gi|314943637|ref|ZP_07850391.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C]
 gi|314948716|ref|ZP_07852089.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082]
 gi|314952166|ref|ZP_07855184.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A]
 gi|314991860|ref|ZP_07857317.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B]
 gi|314996573|ref|ZP_07861608.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a01]
 gi|257813035|gb|EEV41793.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,230,933]
 gi|257817103|gb|EEV44431.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,502]
 gi|257821572|gb|EEV48702.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,501]
 gi|257827026|gb|EEV53652.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,410]
 gi|257837339|gb|EEV62413.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15]
 gi|260078708|gb|EEW66410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6]
 gi|289162291|gb|EFD10151.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF]
 gi|291592518|gb|EFF24123.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636]
 gi|291595255|gb|EFF26584.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679]
 gi|291599201|gb|EFF30233.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317]
 gi|291600940|gb|EFF31231.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039]
 gi|291604251|gb|EFF33746.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162]
 gi|291609245|gb|EFF38517.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980]
 gi|313589262|gb|EFR68107.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a01]
 gi|313593565|gb|EFR72410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B]
 gi|313595698|gb|EFR74543.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A]
 gi|313597674|gb|EFR76519.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C]
 gi|313641842|gb|EFS06422.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a04]
 gi|313644888|gb|EFS09468.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082]
          Length = 200

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 12/190 (6%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R  S   K+     ++V   +R+D   L+GF S  ++Q F+
Sbjct: 16  YIVVETNGIGYQIALGNPYRYSS---KLNQKIKIYVHQVIREDAHLLYGFDSLEEKQLFL 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L SV G+G + A+ +++    + L++++   +   + + PG+  K A +++ +LKGK  
Sbjct: 73  RLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFG 132

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
            LS  +    S  ++      +  S A+ A+SA   LGY  D+    V   LK+  N   
Sbjct: 133 ELS--IDTPFSLFDEANTKDATALSEAMEALSA---LGYS-DREIKRVEKQLKEVDNQTT 186

Query: 194 DSQIIRLALR 203
           D + +R AL+
Sbjct: 187 D-EYLRQALK 195


>gi|223889207|ref|ZP_03623796.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b]
 gi|223885456|gb|EEF56557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b]
          Length = 197

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 37  CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL    + D   LF   + R+++++LFGFL+  +R+ F  L  V GVG + A+ VLS I 
Sbjct: 34  CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPKAALRVLSNIR 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             E  E+I  ++ +++++I GI  K+A ++   L+GK +  S +    +    + +  I 
Sbjct: 94  YNEFKEAIDKEDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 153

Query: 155 SM 156
           SM
Sbjct: 154 SM 155


>gi|225619866|ref|YP_002721123.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae
           WA1]
 gi|225214685|gb|ACN83419.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae
           WA1]
          Length = 192

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 26/212 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G ++ + E  + +   GV Y I    + L    K  D   L+ +   R+D + L
Sbjct: 1   MFAFIEGKVQIISEGVIALLCNGVGYEIIVS-KKLDV--KNDDNIRLYTKLIHREDAMIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L S  GVG ++AM VLS  +  +L+  +  ++  ++ ++ G+ +K 
Sbjct: 58  YGFLTREEKNMFTTLMSASGVGPKLAMEVLSTYSINDLMHILFNKDINLLKKVSGMGVKK 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175
           A +++ EL+ K                 E+  I   PS   N      I AL++LG+  +
Sbjct: 118 AEKLLFELRDKI----------------EKIDINISPSVISNDNESDVIKALISLGFSNN 161

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           +A  A+ ++  K+    +D  +I  ALR +S 
Sbjct: 162 EAVKALSAIENKDNMTTED--LISNALRNLST 191


>gi|315655417|ref|ZP_07908317.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii ATCC 51333]
 gi|315490357|gb|EFU79982.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii ATCC 51333]
          Length = 194

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  IKG +     D   + V G+         TL+ L       T  V+T++  R+D +
Sbjct: 1   MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALVP---GTTATVQTYLVVREDSL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S  +R  F  L  V+G+G ++ +  LS ++   L  ++   +   +  IPG+  
Sbjct: 58  TLYGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R++ E+  K   +S V     +      + +          + AL NLGY Q  AT
Sbjct: 118 KSAERMILEIGDKLGGVSGVAASTGATAGFNASTV----------VEALSNLGYNQAIAT 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203
            AV +V     + +D    +R AL+
Sbjct: 168 EAVNAV-----SASDAPTALREALK 187


>gi|157164589|ref|YP_001466908.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826]
 gi|166230532|sp|A7ZDQ0|RUVA_CAMC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|112800289|gb|EAT97633.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826]
          Length = 184

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 31/193 (16%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           VL    GV Y I+    +L C  K+  G+   L +   +R+D   L+GFL   +++ F +
Sbjct: 18  VLKTNSGVSYGIFI---SLFCSAKLSKGEKVELAITQIIREDANLLYGFLDANEQKMFEM 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  + G+GA  AM V S +++     +II  ++     +PGI  K A RI+ EL      
Sbjct: 75  LIKLNGIGASTAMAVCSSLSSQAFTNAIISGDADTFKSVPGIGPKTARRIIAEL------ 128

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK--KEKNIA 192
                  D   ++ E     S+PS+   A+ AL  LG+ +++    +V +L   K +N +
Sbjct: 129 ------SDTKLISDE-----SVPSYQNEALLALEALGFKREK----IVKILPDCKSENTS 173

Query: 193 DDSQIIRLALRAI 205
           D   +I+ AL+ +
Sbjct: 174 D---LIKEALKKL 183


>gi|86150190|ref|ZP_01068417.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597606|ref|ZP_01100840.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562427|ref|YP_002344206.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20455273|sp|Q9PPC1|RUVA_CAMJE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85839306|gb|EAQ56568.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190198|gb|EAQ94173.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360133|emb|CAL34927.1| putative Holliday junction ATP-dependent DNA helicase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926045|gb|ADC28397.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315928270|gb|EFV07586.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929355|gb|EFV08561.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 183

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 28/185 (15%)

Query: 23  GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           G+ Y I+    +L C  KI   +    F+   +++D  + +GFL   +++ F +L  V G
Sbjct: 24  GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           VGA  AM V S +      +++ L +  V+ ++PGI  K A RI+ EL      L + V 
Sbjct: 81  VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
            D S                  A++AL+ LG+ Q++  + +VS           S++I+ 
Sbjct: 140 DDKS-----------------EALAALLTLGFKQEKIISVLVSA-----QATGTSELIKE 177

Query: 201 ALRAI 205
           AL+ +
Sbjct: 178 ALKKL 182


>gi|301301358|ref|ZP_07207500.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300214787|gb|ADJ79203.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           salivarius CECT 5713]
 gi|300851018|gb|EFK78760.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 201

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 16/193 (8%)

Query: 16  YVLIDVQGVCYIIYC--PIR---TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70
           Y+++DV GV Y +Y   P +         K+      FV   +R + I L+GF +  ++Q
Sbjct: 16  YIVVDVNGVGYQVYVANPFKYEEDEHVEQKV------FVYQAVRDNDISLYGFKNSSEKQ 69

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F+ L  V G+G + A+ +L+      L+ +I   +   + + PGI  K A +I+ +LKG
Sbjct: 70  LFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKTAKQIILDLKG 129

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190
           K   LS V    ++  +     + +   +   ++ AL  LGY + +       + K +  
Sbjct: 130 K---LSDVDSDMLTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRISKKLEKYDGK 186

Query: 191 IADDSQIIRLALR 203
             DD   +R  LR
Sbjct: 187 STDD--YLRQGLR 197


>gi|326693304|ref|ZP_08230309.1| Holliday junction DNA helicase RuvA [Leuconostoc argentinum KCTC
           3773]
          Length = 197

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 8/134 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +Y  Y+++ D  GV Y +Y   P R    +        ++VE  +R+++
Sbjct: 1   MYEYINGLITNIYPAYIVVCDRSGVGYKLYTANPYRFEQNVE-----SHVYVEQIVRENE 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I L+GF+ + ++  F  L +V G+G + A+ +L+   A  LV ++   +   + Q PG+ 
Sbjct: 56  IALYGFMDENEKILFNKLLNVSGIGPKSALAILASGDAQGLVNAVANDDVSYLTQFPGVG 115

Query: 118 MKIASRIMTELKGK 131
            K A +I+ +LKGK
Sbjct: 116 KKTAQQIILDLKGK 129


>gi|289449412|ref|YP_003475227.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289183959|gb|ADC90384.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 206

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G  + +    V+I+  G+ Y +  P   L      GD   +F   ++R+D   L
Sbjct: 1   MYAYINGEYKYVDAGSVVIECNGIGYTLLMP--KLPAW-TAGDKVKVFTYLYVREDIFEL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S      F +L  V  +G ++A+ +L  IT  +   +I+  + K++  I G+  K 
Sbjct: 58  YGFASQEQLNLFKMLIGVNKIGPKLALQILGSITPEQFALAILRNDLKILTSIKGLGKKN 117

Query: 121 ASRIMTELKG---KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ +L+    KA S S+     ++ +  ++  I     F+   + AL  LGY    +
Sbjct: 118 AERLVIDLRDKLKKAGSPSAKASTGLTSLETQEDTIDVADDFSA-VVEALTLLGYDYKTS 176

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                +V   E ++   +Q IRLALR   
Sbjct: 177 VKQAKAVFDPELDL---NQNIRLALRGFD 202


>gi|118586981|ref|ZP_01544413.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118432603|gb|EAV39337.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 194

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           YV IDV G+ + ++ P           D  T+F E  +R ++I L+GF +  +R  F  L
Sbjct: 16  YVGIDVNGIGFRVFTPNPYEYNQN---DQTTIFTEQIVRDNEISLYGFKTVEERNLFQKL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            +V G+G + A+ +++      L+ ++     K + + PGI  K A +I+ +LKGK    
Sbjct: 73  LNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDF 132

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           S  +   M  + +  A +        +A++ALV LG+
Sbjct: 133 SKNIAP-MKNLLENSAELD-------DALAALVALGF 161


>gi|227550815|ref|ZP_03980864.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330]
 gi|257887929|ref|ZP_05667582.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,141,733]
 gi|257893270|ref|ZP_05672923.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,408]
 gi|257896453|ref|ZP_05676106.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12]
 gi|293377530|ref|ZP_06623725.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1]
 gi|227180052|gb|EEI61024.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330]
 gi|257823983|gb|EEV50915.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,141,733]
 gi|257829649|gb|EEV56256.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,408]
 gi|257833018|gb|EEV59439.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12]
 gi|292643845|gb|EFF61960.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1]
          Length = 200

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 12/190 (6%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R  S   K+     ++V   +R+D   L+GF S  ++Q F+
Sbjct: 16  YIVVETNGIGYQIALGNPYRYSS---KLNQKIKIYVHQVIREDAHLLYGFDSLEEKQLFL 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L SV G+G + A+ +++    + L++++   +   + + PG+  K A +++ +LKGK  
Sbjct: 73  RLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFG 132

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
            LS  +    S  ++      +  S A+ A+SA   LGY  D+    V   LK+  N   
Sbjct: 133 ELS--IDTPFSLFDEATTKDATALSEAMEALSA---LGYS-DREIKRVEKQLKEVDNQTT 186

Query: 194 DSQIIRLALR 203
           D + +R AL+
Sbjct: 187 D-EYLRQALK 195


>gi|307711076|ref|ZP_07647498.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321]
 gi|307617038|gb|EFN96216.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321]
          Length = 197

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G+I     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQINQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V+   S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVEVQASAENQELEE----------AMEAMLALGY 165


>gi|307710210|ref|ZP_07646653.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564]
 gi|307618972|gb|EFN98105.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564]
          Length = 197

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI+Y      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLETNGIGYILYVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVSGDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165


>gi|148242421|ref|YP_001227578.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. RCC307]
 gi|166231453|sp|A5GTL6|RUVA_SYNR3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147850731|emb|CAK28225.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. RCC307]
          Length = 208

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 22/143 (15%)

Query: 49  VETHM--RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106
           V TH+  R+D  +L+GF +  DR  F LL SV GVG +VA+G++S + A  L++++  ++
Sbjct: 50  VHTHLQQREDGQQLYGFETKADRNLFRLLISVNGVGPQVALGLISGLGAVSLLQAMAAED 109

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-- 164
            KV+ Q PG+  + A R+  E +       S +Q+      + Q    S P   +  +  
Sbjct: 110 VKVLCQAPGVGKRTAERLSLEWR-------SRLQE------RWQQQGGSTPLRLVEPVAE 156

Query: 165 -----SALVNLGYGQDQATTAVV 182
                + L  LGYG ++ + AV 
Sbjct: 157 SRELRATLEALGYGPEEVSAAVA 179


>gi|251783476|ref|YP_002997781.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242392108|dbj|BAH82567.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323128222|gb|ADX25519.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 197

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +     V Q+ S   K +    S       AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVE----VPQETS---KAKPSTSSNNDQLDEAIEALLALGY 164


>gi|86152153|ref|ZP_01070365.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124320|ref|YP_004066324.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840938|gb|EAQ58188.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018042|gb|ADT66135.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 183

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 28/185 (15%)

Query: 23  GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           G+ Y I+    +L C  KI   +    F+   +++D  + +GFL   +++ F +L  V G
Sbjct: 24  GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           VGA  AM V S +      +++ L +  V+ ++PGI  K A RI+ EL      L + V 
Sbjct: 81  VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
            D S                  A++AL+ LG+ Q++    ++SVL   +  +  S++I+ 
Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASAQATS-TSELIKE 177

Query: 201 ALRAI 205
           AL+ +
Sbjct: 178 ALKKL 182


>gi|315640091|ref|ZP_07895215.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           italicus DSM 15952]
 gi|315484154|gb|EFU74626.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           italicus DSM 15952]
          Length = 200

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 24/207 (11%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62
           IKG +  +   Y++++  G+ Y  ++  P R     GK  +   ++V   +R+D   L+G
Sbjct: 5   IKGVVADIQPSYIVLEANGIGYQLVMGNPYR---YSGKKTEEVKVYVHLIVREDAHTLYG 61

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           F    ++  F+ L SV G+G + A+ +++      L+ +I   +   + + PG+  K A 
Sbjct: 62  FEKLQEKLLFLRLISVSGIGPKSAIAIMANDDHEGLIAAIESDDVTYLTKFPGVGKKTAQ 121

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVNLGYGQDQ 176
           +++ +LKGK   L+  +  ++           +MP F  +      AISAL  LGY  ++
Sbjct: 122 QMILDLKGKLGELAGELTGNL-----------AMPLFDTDTSALTEAISALSALGY-SER 169

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
               V + LKKE   + D + +R AL+
Sbjct: 170 EIKRVETTLKKEGAHSTD-EYLRKALK 195


>gi|170017578|ref|YP_001728497.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20]
 gi|229560098|sp|B1MZV1|RUVA_LEUCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169804435|gb|ACA83053.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20]
          Length = 196

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 8/134 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +Y  Y++I D  GV Y ++   P R    +        ++VE  +R+++
Sbjct: 1   MYEYINGLITNIYPAYLVIADRSGVGYKLFVANPYRFEQNVE-----SHVYVEQIVRENE 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + L+GF+ + ++  F  L +V G+G + A+ +L+   A  LV ++   ++  + Q PG+ 
Sbjct: 56  MTLYGFIDENEKYLFNKLLNVSGIGPKSALAILASDDAAGLVTAVANDDASYLTQFPGVG 115

Query: 118 MKIASRIMTELKGK 131
            K A +I+ +LKGK
Sbjct: 116 KKTAQQIVLDLKGK 129


>gi|288574886|ref|ZP_06393243.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570627|gb|EFC92184.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 202

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 31/218 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G +  +     ++DV G+ + +    R  S L  +G   +L            L
Sbjct: 1   MLAMVTGTVLDVTTQMAVVDVSGLGFEMQL-TRKASSLCSVGKEVSLHCHVQFSDAGPTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   L++  F+ L SV+G+G ++A+ VL  +TA  +V+++   +   +  +PGI  K 
Sbjct: 60  FGFADGLEKAVFLRLLSVRGIGGKLALQVLQGMTAEAVVQAVSFGDPSGLTGVPGIGKKT 119

Query: 121 ASRIMTEL---------KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           A RI  EL         KG   +L  +V  D   V                 + AL +LG
Sbjct: 120 AERICFELQEKMSEGLPKGSTDNLREMVVPDSETV-----------------MEALESLG 162

Query: 172 YGQDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206
           + Q Q+++  ++ + K++   D      +I LALR ++
Sbjct: 163 F-QRQSSSEALAAIAKKRGSVDGLGVEDLIMLALRELN 199


>gi|222153876|ref|YP_002563053.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J]
 gi|254767391|sp|B9DW68|RUVA_STRU0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222114689|emb|CAR43773.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J]
          Length = 197

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 18/177 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGQLTKITAKYIVVEANGLGYIIYVA-NPYSFSDSVNQTLTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVAAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172
           A +++ +L GK +++             E      MP    N     AI AL+ LGY
Sbjct: 120 AQQMILDLSGKFVTIP------------EGGQAQQMPKAKGNQQLDEAIEALLALGY 164


>gi|322377268|ref|ZP_08051760.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334]
 gi|321281981|gb|EFX58989.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334]
          Length = 197

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITRITAKYIVLEVNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNINYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAVQTSAENQELEE----------AMEAMLALGY 165


>gi|283957218|ref|ZP_06374680.1| putative Holliday junction ATP-dependent DNA helicase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791290|gb|EFC30097.1| putative Holliday junction ATP-dependent DNA helicase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 183

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 28/185 (15%)

Query: 23  GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           G+ Y I+    +L C  KI   +    F+   +++D  + +GFL   +++ F +L  V G
Sbjct: 24  GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           VGA  AM V S +      +++ L +  V+ ++PGI  K A RI+ EL      L + V 
Sbjct: 81  VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
            D S                  A++AL+ LG+ Q++    ++SVL   +     S++I+ 
Sbjct: 140 DDKS-----------------EALTALLTLGFKQEK----IISVLASAQATG-TSELIKE 177

Query: 201 ALRAI 205
           AL+ +
Sbjct: 178 ALKKL 182


>gi|228935741|ref|ZP_04098554.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228823979|gb|EEM69798.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 197

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R  F  
Sbjct: 7   EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+     ++V++I  ++ K + + P +  K A +++ +LKGK   
Sbjct: 65  LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPSVGKKTARQMILDLKGK--- 121

Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+ VV         D    ++++     +      A+ AL  LGY + + +  V  +LK+
Sbjct: 122 LADVVPDAFVDLFSDEERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177


>gi|218441378|ref|YP_002379707.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424]
 gi|226725437|sp|B7K970|RUVA_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218174106|gb|ACK72839.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424]
          Length = 209

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 1   MIGKIKGNIEGLYE-----DYVLIDVQGVCYIIYCPIRTLSCLGKIGD-FCTLFVETHMR 54
           MI  +KG    + +     + ++++V  + Y I  P R    L    D    +F    +R
Sbjct: 1   MINYLKGKTTQILKTPSNRNILILEVNHIGYEIQIPSRLARNLSLEEDQIVQIFTHLQIR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +D +R  F  L ++ GVG + A+ ++  +    L+ +I+  + K +++ P
Sbjct: 61  EDQQILYGFSTDSERDLFRQLININGVGTQTAIALIDTLGIEALINAIVTNDVKTLSKTP 120

Query: 115 GISMKIASRIMTELKGK 131
           G+  K A RI  ELK K
Sbjct: 121 GVGPKTAERIALELKSK 137


>gi|57237644|ref|YP_178892.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221]
 gi|86153371|ref|ZP_01071575.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613230|ref|YP_001000488.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157415070|ref|YP_001482326.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205356769|ref|ZP_03223528.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|73621848|sp|Q5HUZ3|RUVA_CAMJR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230537|sp|A1VZE7|RUVA_CAMJJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172047113|sp|A8FLL2|RUVA_CAMJ8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57166448|gb|AAW35227.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221]
 gi|85843097|gb|EAQ60308.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249483|gb|EAQ72443.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157386034|gb|ABV52349.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205345336|gb|EDZ31980.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|307747711|gb|ADN90981.1| Holliday junction ATP-dependent DNA helicase ruvA [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315058253|gb|ADT72582.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315931217|gb|EFV10189.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 183

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 28/185 (15%)

Query: 23  GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           G+ Y I+    +L C  KI   +    F+   +++D  + +GFL   +++ F +L  V G
Sbjct: 24  GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           VGA  AM V S +      +++ L +  V+ ++PGI  K A RI+ EL      L + V 
Sbjct: 81  VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
            D S                  A++AL+ LG+ Q++    ++SVL   +     S++I+ 
Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASAQATG-TSELIKE 177

Query: 201 ALRAI 205
           AL+ +
Sbjct: 178 ALKKL 182


>gi|315612298|ref|ZP_07887212.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis ATCC 49296]
 gi|315315691|gb|EFU63729.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis ATCC 49296]
          Length = 197

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEVNGIGYILHVA-NPYAYSGQVNQETQIYVHQVVREDTHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEE----------AMEAMLALGY 165


>gi|218296106|ref|ZP_03496875.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23]
 gi|218243483|gb|EED10012.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23]
          Length = 191

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +    E   L+ V GV + +  P   L  L + G+   +     +R++ + L
Sbjct: 1   MIRYLKGVVARKEEGSFLLLVGGVGFQVQAPSPFLQGL-REGEEVGVHTHLALREEGLFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  +   + F LL SV GVG +VA+ +LS +    L +++   + +++    G+  ++
Sbjct: 60  FGFPEEESLKLFELLLSVSGVGPKVALALLSALPPRLLAQALAEGDLRLLTSASGVGRRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELKGK       V +D+    K ++           AI AL  LG+ + QA + 
Sbjct: 120 AERLALELKGK-------VPKDLLTGEKVESREAEE------AILALAALGFKEGQARSV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L K    A   ++I+ ALR +
Sbjct: 167 VLDLLAKNPG-AKAQELIKEALRRL 190


>gi|323165015|gb|EFZ50805.1| holliday junction DNA helicase RuvA [Shigella sonnei 53G]
          Length = 123

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 64/122 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKP 120

Query: 121 AS 122
            S
Sbjct: 121 PS 122


>gi|325295513|ref|YP_004282027.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065961|gb|ADY73968.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 188

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 2/134 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIR 59
           MI  +KG +   Y D + +    + + ++ P+  L+ + + GD   LFV+ T   +    
Sbjct: 1   MIDYLKGKVIFKYSDSISLLCGSIAFRVFVPLNLLTEI-REGDKVALFVKFTLPSEGTPS 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R +F  L  +  VG++VAM V+S  +  EL   +  ++ K ++ +PG+  K
Sbjct: 60  LYGFKTREERVFFEELLKIPKVGSKVAMSVISHFSLDELRNIVSTKDVKTLSTVPGLGKK 119

Query: 120 IASRIMTELKGKAI 133
           ++ R++ ELK K I
Sbjct: 120 LSERVILELKDKPI 133


>gi|332523205|ref|ZP_08399457.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314469|gb|EGJ27454.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 197

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG ++ +   Y++++  G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGKLKKITAKYIVVEANGLGYIIYVA-NPYSFTDSVNQNVTIYLHQVIREDAHIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVRAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +  S   QQ           +         AI AL+ LGY
Sbjct: 120 AQQMILDLAGKFVDSSEPSQQQSQAKRNSNQQLDE-------AIEALLALGY 164


>gi|148926965|ref|ZP_01810642.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845049|gb|EDK22146.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 183

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 28/185 (15%)

Query: 23  GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           G+ Y I+    +L C  KI   +    F+   +++D  + +GFL   +++ F +L  V G
Sbjct: 24  GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           VGA  AM V S +      +++ L +  V+ ++PGI  K A RI+ EL      L + V 
Sbjct: 81  VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
            D S                  A++AL+ LG+ Q++    ++SVL   +     S++I+ 
Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASAQATG-TSELIKE 177

Query: 201 ALRAI 205
           AL+ +
Sbjct: 178 ALKKL 182


>gi|24215603|ref|NP_713084.1| Holliday junction DNA helicase RuvA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|24196756|gb|AAN50102.1| holliday junction DNA helicase RuvA [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 212

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 39/228 (17%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVETHMR 54
           MI  +KG ++ L   +V I+  G+ Y +      Y  ++ L  L ++     +F   + R
Sbjct: 1   MISGLKGTLKKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQ--LQIFHSINER 58

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
               +LFGFL++ D+++F +++ +QG+G   A+ +LS  +A +L   +    +K + +IP
Sbjct: 59  GQ--KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEAKELEKIP 116

Query: 115 GISMKIASRIMTELKGK---------------AISLSSVVQ--QDMSCVNKEQAHICSMP 157
            +  K + +I  E+K                 ++ L+S++Q  ++M+   K +  I    
Sbjct: 117 KVKGKTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVIL--- 173

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
                    LV LG+ +  A+  V  VLK   +  D  +IIR  L+++
Sbjct: 174 --------GLVQLGFEEKTASKEVDKVLKIFSS-NDPGEIIREILKSL 212


>gi|332712357|ref|ZP_08432284.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L]
 gi|332348831|gb|EGJ28444.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L]
          Length = 211

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM-- 53
           MI  +KG +  + +       +++DV  + Y I    R    L       T+ + TH+  
Sbjct: 1   MISYLKGTVASIQKSTGNRVTLILDVNYIGYEIQITRRLSQELPVALSEKTVQIFTHLQI 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R++Q  L+GF S  +R  F  L SV G+GA++A+ +L  +    LV++I+  N + +++ 
Sbjct: 61  REEQQVLYGFASAAERDLFRQLVSVNGIGAQLAIALLDTLGLPNLVQAIVTGNIRALSKT 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+  K A RI  ELK K      V     S V    +     P    +    L+ LGY 
Sbjct: 121 PGVGSKTAERIALELKTKLAQWHKV-----SEVESPLSANGLSPGIQEDVEMTLLALGYE 175

Query: 174 QDQATTAVVSV-----LKKEKNIAD 193
            D+   A+ ++     + K KN  D
Sbjct: 176 NDEIAQALHAISEDTQVAKSKNAED 200


>gi|57242124|ref|ZP_00370064.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis
           RM3195]
 gi|57017316|gb|EAL54097.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis
           RM3195]
          Length = 183

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQ 57
           M+  I+G I      + ++  Q GV Y IY    +L C  K+     C L +   +++D 
Sbjct: 1   MVVAIEGIITKKEPTFAVLKTQNGVSYGIYI---SLFCAAKLELHTKCELLITQIIKEDS 57

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            +L+GFL   +++ F +L  V G+GA  AM + S + +    +++ L +  V  ++PGI 
Sbjct: 58  HKLYGFLEKDEQKIFEMLLKVNGIGATTAMTICSSLDSNAFYKALSLNDESVFKKVPGIG 117

Query: 118 MKIASRIMTELKGKAISLSSV 138
            K A RI+ EL     + ++V
Sbjct: 118 AKSAKRIIVELADAKTAFNNV 138


>gi|313886562|ref|ZP_07820276.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923972|gb|EFR34767.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 202

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 19/210 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT--LFVETHMRQDQI 58
           MI  ++G I+ L      +D  GV Y +   + T   L  +       L++   MRQ ++
Sbjct: 1   MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLEREAPVRLWITEVMRQGEV 60

Query: 59  -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  ++  F  L +V GVG   A  +LS +   EL E I   + K +  + GI 
Sbjct: 61  CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQD 175
           +K A RI+ +LKGK       + + ++  +   A I S  +   A  AISAL  LG+   
Sbjct: 121 LKTAQRIIVDLKGK-------LPETLTDRDDVTAGIGSRAAREVAEEAISALKMLGF--- 170

Query: 176 QATTAVVSVLKKEKNIADDS---QIIRLAL 202
            A   V  V+K+  ++  D+   Q+I+ AL
Sbjct: 171 -AEVNVRKVVKQIMSVKPDTPVEQVIKQAL 199


>gi|293364377|ref|ZP_06611103.1| crossover junction endoribonuclease subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307702657|ref|ZP_07639609.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC
           35037]
 gi|331267168|ref|YP_004326798.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5]
 gi|291317223|gb|EFE57650.1| crossover junction endoribonuclease subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307623773|gb|EFO02758.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC
           35037]
 gi|326683840|emb|CBZ01458.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5]
          Length = 197

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIILEANGIGYILHVA-NPYAYSGQVNQETQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L S V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVAVQTSAENQELEE----------AMEAMLALGY 165


>gi|332300396|ref|YP_004442317.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177459|gb|AEE13149.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 202

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 19/210 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT--LFVETHMRQDQI 58
           MI  ++G I+ L      +D  GV Y +   + T   L  +       L++   MRQ ++
Sbjct: 1   MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60

Query: 59  -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  ++  F  L +V GVG   A  +LS +   EL E I   + K +  + GI 
Sbjct: 61  CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQD 175
           +K A RI+ +LKGK       + + ++  +   A I S  +   A  AISAL  LG+   
Sbjct: 121 LKTAQRIIVDLKGK-------LPETLTDRDDVTAGIGSRAAREVAEEAISALKMLGF--- 170

Query: 176 QATTAVVSVLKKEKNIADDS---QIIRLAL 202
            A   V  V+K+  ++  D+   Q+I+ AL
Sbjct: 171 -AEVNVRKVVKQIMSVKPDTPVEQVIKQAL 199


>gi|314923584|gb|EFS87415.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL001PA1]
 gi|314966629|gb|EFT10728.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL082PA2]
 gi|314981358|gb|EFT25452.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL110PA3]
 gi|315092024|gb|EFT64000.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL110PA4]
 gi|315092849|gb|EFT64825.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL060PA1]
 gi|315103631|gb|EFT75607.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL050PA2]
 gi|315105680|gb|EFT77656.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL030PA1]
 gi|327327453|gb|EGE69229.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL103PA1]
          Length = 158

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)

Query: 53  MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
           +R++ + L+GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + +
Sbjct: 9   VREESLTLYGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCR 68

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +PGI  K A++++ ELK K  +L+               H+ +   +       LV LG+
Sbjct: 69  VPGIGRKGAAKMILELKDKVAALAP-----RGASASGATHVAA--PWREQVAEGLVGLGW 121

Query: 173 GQDQATTAV--VSVLKKEKNIADDSQIIRLALRAIS 206
               A  AV  V  LK+         ++R ALR+++
Sbjct: 122 STKDAEKAVDKVVALKEADPAMSIGNLMRAALRSLA 157


>gi|315604284|ref|ZP_07879350.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313990|gb|EFU62041.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 201

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G +     D+V + V G+ + ++    T +C   +     + V T M  R+D +
Sbjct: 1   MISILRGTVASTGLDHVDVVVGGIGFRVHV---TPACAQAMARDREITVHTSMIVREDSM 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S  +R  F  L +V G+G ++A+  L+ +   +L  ++  Q+  V+ +IPG+  
Sbjct: 58  TLYGFESSDERDVFAALMTVSGIGPKIALAALAVLRPDDLRRAVRDQDLAVLQRIPGVGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R+  E+  K  S ++     +      ++   +  + A     ALV LG+ + QA 
Sbjct: 118 KSAQRMALEIGDKLGSPAA-----LPGAGPTRSAPPAEDAVAAEVRVALVGLGWSETQAC 172

Query: 179 TAV 181
            A+
Sbjct: 173 AAI 175


>gi|213163229|ref|ZP_03348939.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 174

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 31  PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
           P+     L + G    +F    +R+D   L+GF +  +R  F  L    GVG ++A+ +L
Sbjct: 2   PMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAIL 61

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-----------AISLSSVV 139
           S ++A + V ++  +    + ++PGI  K A R++ E+K +           A+ L    
Sbjct: 62  SGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTS 121

Query: 140 QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIR 199
               +  + EQ            A++ALV LGY   +A+  V  + + +   A    +IR
Sbjct: 122 PASPTSEDAEQ-----------EAVAALVALGYKPQEASRMVSKIARPD---ASSETLIR 167

Query: 200 LALRA 204
            ALRA
Sbjct: 168 DALRA 172


>gi|330718512|ref|ZP_08313112.1| Holliday junction DNA helicase RuvA [Leuconostoc fallax KCTC 3537]
          Length = 196

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 16  YVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y   I  P R      +I      ++E  +R+ +I L+GF    +++ F 
Sbjct: 16  YLVVENNGIGYRLNIANPYRFTEKTSRI-----FYIEQIVRETEISLYGFADASEKKLFN 70

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L  V G+G + A+ +L+  +A  L  ++   +   + Q PG+  K A +I+ +LKGK  
Sbjct: 71  KLLDVSGIGPKSALAILASDSAIGLASAVENDDVSYLTQFPGVGKKTAQQIILDLKGKLD 130

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
            L S        +  +Q H         +A+ AL+ LGY
Sbjct: 131 DLVSAADAPEQSIVSKQDHRA-----LDDALDALIALGY 164


>gi|77408136|ref|ZP_00784882.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1]
 gi|77173236|gb|EAO76359.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1]
          Length = 196

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  G+ Y+IY      S  G +    T+++   +R D   L
Sbjct: 1   MYDYIKGKLSKITAKFIVVETAGLGYVIYVA-NPYSFSGYVNQEVTIYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +  S          +++ +++         A+ AL+ LGY
Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNLEE-------AMEALLALGY 164


>gi|76787979|ref|YP_330625.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909]
 gi|77405120|ref|ZP_00782219.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B]
 gi|77410868|ref|ZP_00787225.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           CJB111]
 gi|90135931|sp|Q3JYM8|RUVA_STRA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76563036|gb|ABA45620.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909]
 gi|77163086|gb|EAO74040.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           CJB111]
 gi|77176263|gb|EAO79033.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B]
 gi|319745991|gb|EFV98273.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           agalactiae ATCC 13813]
          Length = 196

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  G+ Y+IY      S  G +    T+++   +R D   L
Sbjct: 1   MYDYIKGKLSKITAKFIVVETAGLGYVIYVA-NPYSFSGYVNQEVTIYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +  S          +++ +++         A+ AL+ LGY
Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNLEE-------AMEALLALGY 164


>gi|228471297|ref|ZP_04056103.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3]
 gi|228306939|gb|EEK16037.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3]
          Length = 202

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 19/210 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT--LFVETHMRQDQI 58
           MI  ++G I+ L      +D  GV Y +   + T   L  +       L++   MRQ ++
Sbjct: 1   MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60

Query: 59  -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  ++  F  L +V GVG   A  +LS +   EL E I   + K +  + GI 
Sbjct: 61  CDLYGFYTREEQALFAKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQD 175
           +K A RI+ +LKGK       + + ++  +   A I S  +   A  AISAL  LG+   
Sbjct: 121 LKTAQRIIVDLKGK-------LPETLTDRDDVTAGIGSRAAREVAEEAISALKMLGF--- 170

Query: 176 QATTAVVSVLKKEKNIADDS---QIIRLAL 202
            A   V  V+K+   +  D+   Q+I+ AL
Sbjct: 171 -AEANVRKVVKQIMTVKPDTPVEQVIKQAL 199


>gi|323464267|gb|ADX76420.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius ED99]
          Length = 199

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G +  L+  +++++   G+ Y I  P  +      +     ++    +R+D   
Sbjct: 1   MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQMVKVYTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F+ L  V G+G + A+ +L+  +  E+  +I  +N   + Q PGI  K
Sbjct: 60  LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
            A +I+ +LKGK + ++  V + +  +  EQ  +         A+ AL  LGY +
Sbjct: 120 TARQIVLDLKGKVV-VTEEVSEGLLDIATEQEDLAVQ-----EALLALEALGYSK 168


>gi|306828753|ref|ZP_07461945.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           mitis ATCC 6249]
 gi|304428931|gb|EFM32019.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           mitis ATCC 6249]
          Length = 197

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQETQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L S V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVAVQTSAENQELEE----------AMEAMLALGY 165


>gi|291545898|emb|CBL19006.1| Holliday junction resolvasome, DNA-binding subunit [Ruminococcus
           sp. SR1/5]
          Length = 134

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           F LL  V GVG + A+G+LS I+A EL  +++  + K I++ PGI  K A +++ ELK K
Sbjct: 2   FKLLIGVNGVGPKGALGILSGISADELRFAVLSDDVKTISKAPGIGKKTAQKMILELKDK 61

Query: 132 AISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190
            + L    +  ++   +E A   S +      A+ ALV LGY    A  AV  V   E  
Sbjct: 62  -LKLEDAFEMKLAHQQEEAAEGASDLRDSRQEAVEALVALGYSSADALRAVRKV--PEDV 118

Query: 191 IADDSQ-IIRLALR 203
            ADD + I+R AL+
Sbjct: 119 PADDVEAILRAALK 132


>gi|317124983|ref|YP_004099095.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum
           DSM 43043]
 gi|315589071|gb|ADU48368.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum
           DSM 43043]
          Length = 201

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 38  LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97
           +G+  D  T  V   +R+D + L+GF ++ ++  F  +Q+V GVG R+A+ VL+    T 
Sbjct: 40  IGQPADLATTLV---VREDSLTLYGFATEEEKHVFETVQTVSGVGPRLALAVLAVHDPTS 96

Query: 98  LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP 157
           +  ++   +   + ++PGI  K A R++ EL+ K  +L+     D + +  ++  +   P
Sbjct: 97  VRRALGSGDIAALTKVPGIGKKGAERLVLELRDKLGALAG--SSDGASIGHQR--MDGEP 152

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +      ALV LG+   QA  A+  V  +  + A  S ++R ALR +
Sbjct: 153 -WREQVREALVGLGWTVRQADDALDRVAPQAADGASVSAMLRAALREL 199


>gi|299535650|ref|ZP_07048971.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           fusiformis ZC1]
 gi|298728850|gb|EFI69404.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           fusiformis ZC1]
          Length = 206

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 26/188 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56
           M   +KG I  +  ++++++ QG+ + +  P     RT +   +I      +V  H+R+D
Sbjct: 1   MYDYLKGQITRITPEFIVLEQQGIGWQLNTPNPFAFRTSALEQQI------YVHLHVRED 54

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +   R+ F  L  V G+G + A+ +L+     +++ +I  ++   + + PG+
Sbjct: 55  AQVLYGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGV 114

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS--------ALV 168
             K A +++ +LKGK  SL   ++  +     E      +P F +NA          AL+
Sbjct: 115 GKKTARQMILDLKGKLGSLLDTLE--LPSAEDE------LPLFGVNAYKHELEEALLALM 166

Query: 169 NLGYGQDQ 176
            LGY + +
Sbjct: 167 ALGYSEKE 174


>gi|15900116|ref|NP_344720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           TIGR4]
 gi|111657940|ref|ZP_01408649.1| hypothetical protein SpneT_02000889 [Streptococcus pneumoniae
           TIGR4]
 gi|148987917|ref|ZP_01819380.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|148992760|ref|ZP_01822403.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|149001716|ref|ZP_01826689.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|149005932|ref|ZP_01829661.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|168486048|ref|ZP_02710556.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490355|ref|ZP_02714554.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP195]
 gi|168493877|ref|ZP_02718020.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832637|ref|YP_001693700.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|237649747|ref|ZP_04523999.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI
           1974]
 gi|237821445|ref|ZP_04597290.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307126405|ref|YP_003878436.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           670-6B]
 gi|20455255|sp|Q97SY4|RUVA_STRPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560133|sp|B1I8F7|RUVA_STRPI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|14971646|gb|AAK74360.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           TIGR4]
 gi|147760174|gb|EDK67163.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147762288|gb|EDK69249.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|147926381|gb|EDK77454.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147928486|gb|EDK79501.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|168995139|gb|ACA35751.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183570844|gb|EDT91372.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571324|gb|EDT91852.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP195]
 gi|183576015|gb|EDT96543.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC3059-06]
 gi|306483467|gb|ADM90336.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           670-6B]
 gi|332075851|gb|EGI86318.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA17570]
 gi|332076630|gb|EGI87092.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA17545]
 gi|332077485|gb|EGI87946.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA41301]
 gi|332204192|gb|EGJ18257.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA47901]
          Length = 197

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165


>gi|15902209|ref|NP_357759.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae R6]
 gi|116515482|ref|YP_815689.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae D39]
 gi|148996605|ref|ZP_01824323.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP11-BS70]
 gi|149011051|ref|ZP_01832356.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP19-BS75]
 gi|168576389|ref|ZP_02722272.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           MLV-016]
 gi|182683163|ref|YP_001834910.1| holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae CGSP14]
 gi|221231090|ref|YP_002510242.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC
           700669]
 gi|303255118|ref|ZP_07341194.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS455]
 gi|307066862|ref|YP_003875828.1| Holliday junction resolvasome DNA-binding subunit [Streptococcus
           pneumoniae AP200]
 gi|32171637|sp|Q8DRE8|RUVA_STRR6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122279425|sp|Q04MQ9|RUVA_STRP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560134|sp|B2IS15|RUVA_STRPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767390|sp|B8ZKD4|RUVA_STRPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15457707|gb|AAK98969.1| Holliday junction DNA helicase [Streptococcus pneumoniae R6]
 gi|116076058|gb|ABJ53778.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae D39]
 gi|147757180|gb|EDK64219.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP11-BS70]
 gi|147764687|gb|EDK71617.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP19-BS75]
 gi|182628497|gb|ACB89445.1| holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae CGSP14]
 gi|183577836|gb|EDT98364.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           MLV-016]
 gi|220673550|emb|CAR68036.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC
           700669]
 gi|301793458|emb|CBW35831.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           INV104]
 gi|301801130|emb|CBW33803.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           INV200]
 gi|302597948|gb|EFL65018.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS455]
 gi|306408399|gb|ADM83826.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           pneumoniae AP200]
          Length = 197

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDGLPAKVAVQASAENQELEE----------AMEAMLALGY 165


>gi|167755866|ref|ZP_02427993.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402]
 gi|237734834|ref|ZP_04565315.1| holliday junction DNA helicase subunit RuvA [Mollicutes bacterium
           D7]
 gi|167704805|gb|EDS19384.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402]
 gi|229382162|gb|EEO32253.1| holliday junction DNA helicase subunit RuvA [Coprobacillus sp. D7]
          Length = 188

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           D+++++  G+ Y+IY         GK      +F+   +++D + L+GF +  +++ F+ 
Sbjct: 15  DHIVVENSGIGYLIYVNNPYEYTRGK---EIKIFLYQQVKEDALLLYGFKTSEEKEMFLK 71

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           L  V+G+G + A+G+L+    T ++ +I   N   + +IPGI  K A +I+ +L+GK
Sbjct: 72  LILVKGIGCKTAIGILATGDVTSIISAIETGNVAYLKKIPGIGPKAAQQIILDLQGK 128


>gi|219685405|ref|ZP_03540224.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04]
 gi|219673178|gb|EED30198.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04]
          Length = 196

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 37  CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           CL   K+ D   LF   +  +++++LFGFL+  +R+ F  L  V G+G R A+ VLS I 
Sbjct: 34  CLANFKLSDKVELFTYLYAGENELKLFGFLNSDERETFKSLIGVSGIGPRAALRVLSNIR 93

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
             E  ++I  ++ +++++I GI  K+A ++   L+GK +
Sbjct: 94  YNEFKDAIDREDVELVSKIKGIGKKMAGKMFLHLQGKLL 132


>gi|309799338|ref|ZP_07693581.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302]
 gi|308117005|gb|EFO54438.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302]
          Length = 197

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGRVNQEAQIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172
           A +++ +L+GK +    V   D+           + PS + N     A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVV----VAGDDLPTK-------TAAPSSSDNQELEEAMEAMLALGY 165


>gi|322375071|ref|ZP_08049585.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300]
 gi|321280571|gb|EFX57610.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300]
          Length = 197

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 88/176 (50%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +    +L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVASDALPAKVAVQASAENQELEE----------AMEAMLALGY 165


>gi|319892695|ref|YP_004149570.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162391|gb|ADV05934.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 199

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G +  L+  +++++   G+ Y I  P  +      +     ++    +R+D   
Sbjct: 1   MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQTVKVYTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F+ L  V G+G + A+ +L+  +  E+  +I  +N   + Q PGI  K
Sbjct: 60  LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
            A +I+ +LKGK + ++  V + +  +  EQ  +         A+ AL  LGY +
Sbjct: 120 TARQIVLDLKGKVV-VTEEVSEGLLDIATEQEDLAVQ-----EALLALEALGYSK 168


>gi|172036123|ref|YP_001802624.1| Holliday junction DNA helicase RuvA [Cyanothece sp. ATCC 51142]
 gi|226698729|sp|B1WUV7|RUVA_CYAA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171697577|gb|ACB50558.1| Holliday junction DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 212

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%)

Query: 43  DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102
           D   +F    +++DQ  L+GF +  +R+ F  L SV G+GA+ A+ ++  +   ELV++I
Sbjct: 49  DTIQIFTHVQIKEDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAI 108

Query: 103 ILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI- 161
           +  N ++++Q  GI  K A RI  EL+ K       + Q    V        +MPS  I 
Sbjct: 109 VTGNIRILSQPSGIGRKTAERIALELRTK-------LSQWRKMVGVTVTSSAAMPSLEIL 161

Query: 162 -NAISALVNLGYGQDQATTAVVSV 184
            +    L+ LGY  ++   A+ ++
Sbjct: 162 EDIEMTLLALGYTNEEINKAISTL 185


>gi|22538230|ref|NP_689081.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           2603V/R]
 gi|25012088|ref|NP_736483.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           NEM316]
 gi|76799561|ref|ZP_00781690.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           18RS21]
 gi|77414038|ref|ZP_00790209.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515]
 gi|44888490|sp|Q8DWW6|RUVA_STRA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888493|sp|Q8E2R7|RUVA_STRA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|22535142|gb|AAN00954.1|AE014286_17 Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           2603V/R]
 gi|24413632|emb|CAD47709.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585090|gb|EAO61719.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           18RS21]
 gi|77159920|gb|EAO71060.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515]
          Length = 196

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  G+ Y+IY      S  G +    T+++   +R D   L
Sbjct: 1   MYDYIKGKLSKITAKFIVVETAGLGYMIYVA-NPYSFSGYVNQEVTIYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +  S          +++ +++         A+ AL+ LGY
Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNLEE-------AMEALLALGY 164


>gi|331668556|ref|ZP_08369404.1| holliday junction DNA helicase RuvA [Escherichia coli TA271]
 gi|331063750|gb|EGI35661.1| holliday junction DNA helicase RuvA [Escherichia coli TA271]
 gi|332756762|gb|EGJ87109.1| holliday junction DNA helicase RuvA [Shigella flexneri 4343-70]
          Length = 123

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119


>gi|227875448|ref|ZP_03993589.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris
           ATCC 35243]
 gi|269977300|ref|ZP_06184273.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1]
 gi|306818760|ref|ZP_07452482.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           mulieris ATCC 35239]
 gi|307701010|ref|ZP_07638035.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16]
 gi|227844002|gb|EEJ54170.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris
           ATCC 35243]
 gi|269934603|gb|EEZ91164.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1]
 gi|304648446|gb|EFM45749.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           mulieris ATCC 35239]
 gi|307614005|gb|EFN93249.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16]
          Length = 193

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 18/204 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D   I   G+    +    TLS L + G    ++    +R+D + L
Sbjct: 1   MIALLKGQVVDKRIDRATILCGGLGLEFFATPNTLSTLNQ-GQDAEIYTCLVVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R+ F +L  V+G+G ++A+  L+ ++ ++L  ++  ++   + +IPG+  K 
Sbjct: 60  YGFDDFQQRETFQILIQVKGIGPKLALATLAVLSPSDLANAVANRDLTTLQRIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AINAISALVNLGYGQDQATT 179
           A R+  E+  K           +  V        +   F A   + AL NLG+ Q QAT 
Sbjct: 120 AERMSLEIGDK-----------LGIVPTSVTTAATGGGFNATTVVEALTNLGWNQAQATE 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
           AV ++   E N  D +  +R AL+
Sbjct: 169 AVNAI---EAN--DAATALREALQ 187


>gi|320449357|ref|YP_004201453.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01]
 gi|320149526|gb|ADW20904.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01]
          Length = 191

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +    E   L+ V GV +++  P   L  L K G    +     +R++ + L
Sbjct: 1   MIRYLRGTVLKREEGGFLLLVNGVGFLVQAPQTFLQSL-KEGQEVAVHTHLQLREEGLFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +     F LL SV GVG +VA+ +LS +T   L +++   + +++    G+  ++
Sbjct: 60  YGFPDEESLLLFELLLSVSGVGPKVALSLLSALTPRLLAQALAQGDLRLLTAASGVGRRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELKGK +  S +  Q +     E+            AI AL  LG+ + QA   
Sbjct: 120 AERIALELKGK-VPPSLLTGQKVESQAAEE------------AILALTALGFKEGQARGV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L K  + A   ++I+ AL+ +
Sbjct: 167 VLDLLAKRPS-ASAQELIKEALKRL 190


>gi|330444140|ref|YP_004377126.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58]
 gi|328807250|gb|AEB41423.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58]
          Length = 207

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 9/189 (4%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQIRLFGFLSDLDRQWFML 74
           V ++ QGV Y I+   R   C         + + TH  +++ +  L+GF S  +R  F +
Sbjct: 17  VTLECQGVGYSIFVTER-WGCDLIAASQKEVLIYTHAVLKETEHTLYGFCSREERDCFRM 75

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L S  G+G + A  +L+ +   +L  ++  ++ K ++ IPGI  K A ++M +LK K  S
Sbjct: 76  LISFSGIGPKFANAILNSLPIKQLCCAVHNEDVKALSSIPGIGKKTAEKLMLDLKQKLPS 135

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
           +  +   + S     +       S   + + ALV LGY +  A   +   LK+    A  
Sbjct: 136 VLPLGGGETSPWQPLEL------SHREDGVQALVGLGYSKVMAEHMIAEALKELPKGASL 189

Query: 195 SQIIRLALR 203
           ++++ +AL+
Sbjct: 190 TEVLPIALK 198


>gi|290890055|ref|ZP_06553138.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429]
 gi|290480246|gb|EFD88887.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429]
          Length = 178

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
           IDV G+ + ++ P           D  T+F E  +R +QI L+GF +  +R  F  L +V
Sbjct: 3   IDVNGIGFRVFTPNPYEYNQN---DQTTIFTEQIVRDNQISLYGFKTVKERNLFQKLLNV 59

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
            G+G + A+ +++      L+ ++     K + + PGI  K A +I+ +LKGK    S  
Sbjct: 60  SGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDFSKN 119

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +   M  + +  A +        +A++ALV LG+
Sbjct: 120 IAP-MKNLLENSAELD-------DALAALVALGF 145


>gi|16330186|ref|NP_440914.1| Holliday junction DNA helicase RuvA [Synechocystis sp. PCC 6803]
 gi|3122847|sp|P73554|RUVA_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|1652674|dbj|BAA17594.1| Holliday junction DNA helicase; RuvA [Synechocystis sp. PCC 6803]
          Length = 211

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 16/205 (7%)

Query: 8   NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQIRLFGFLS 65
           NI+  +  ++++ V GV Y +  P  +L+            V TH+  RQDQI LFGF  
Sbjct: 15  NIQNRW--FLILSVNGVGYELQVP-HSLAQQWTPPPPEPQQVFTHLLVRQDQIALFGFGR 71

Query: 66  DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +R  F  L  V G+GA++A+ ++  +    LV++++  N K + Q PG+  K A R+ 
Sbjct: 72  LAERDLFGQLMGVTGIGAQLAIALIETLGLEGLVQAVVTGNVKQLCQTPGVGKKGAERLA 131

Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQD--QATTAV 181
            ELK K   LS   +  M     +     ++P+ A+  +    L+ LGY Q   Q   A+
Sbjct: 132 LELKTK---LSQWHKLQMGTGETD----STLPTTALLEDLEMTLLALGYTQTEIQQAIAM 184

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
           VS +       D    IR A+  +S
Sbjct: 185 VSQVPDVAQSEDPEVWIRQAIGWLS 209


>gi|319956495|ref|YP_004167758.1| holliday junction DNA helicase subunit ruva [Nitratifractor
           salsuginis DSM 16511]
 gi|319418899|gb|ADV46009.1| Holliday junction DNA helicase subunit RuvA [Nitratifractor
           salsuginis DSM 16511]
          Length = 187

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +E     ++ ++V G+ Y +   + T + + GK  +   L+V   +R+D   
Sbjct: 1   MIVGIEGKVEAREPTWLHLNVGGLIYEVNVSLNTSNTVAGK--EQVKLYVTQIIREDANL 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    +++ F  L  + GVG +VA  V S  T     + +  ++  ++ ++PGI  K
Sbjct: 59  LFGFADRNEKKMFDTLLKINGVGPKVAQAVCSTFTPESFAKIVAAKDVALLKRVPGIGPK 118

Query: 120 IASRIMTEL 128
            ASRI+ EL
Sbjct: 119 AASRILVEL 127


>gi|332202100|gb|EGJ16169.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA41317]
          Length = 197

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + +    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEE----------AMEAMLALGY 165


>gi|153952036|ref|YP_001398280.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|166230536|sp|A7H450|RUVA_CAMJD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152939482|gb|ABS44223.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 183

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 28/185 (15%)

Query: 23  GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           G+ Y I+    +L C  KI   +    F+   +++D  + +GFL   +++ F +L  V G
Sbjct: 24  GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           VGA  AM V S +      +++ L +  V+ ++PGI  K A RI+ EL      L + V 
Sbjct: 81  VGANTAMAVCSSLDINSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTRTKLEN-VS 139

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
            D S                  A++AL+ LG+ Q++    ++SVL   +     S++I+ 
Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASAQATG-TSELIKE 177

Query: 201 ALRAI 205
           AL+ +
Sbjct: 178 ALKKL 182


>gi|222151527|ref|YP_002560683.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus
           JCSC5402]
 gi|254766967|sp|B9E719|RUVA_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222120652|dbj|BAH17987.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus
           JCSC5402]
          Length = 193

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 12/194 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   +++I+V G+ Y    P        ++    TL  +  +R+D   L
Sbjct: 1   MYAYLKGKIMTILPTHLVIEVSGIGYECLTP-NPYRFNHQLDQMITLHTQLVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + ++  F  L  V G+G + A+ +L+  T  E++++I  ++   + + PGI  K 
Sbjct: 60  YGFKDEEEKAMFNALNKVTGIGPKSALAILATSTPQEIIKAIESESESYLIKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      +   D S + KE        +    A+ A   LGY + + T  
Sbjct: 120 ARQIILDLKGK------LTITDESELFKEVND-----TLLNEALLAFEALGYSKREITKI 168

Query: 181 VVSVLKKEKNIADD 194
              + KK+ +  D+
Sbjct: 169 EKELKKKQFSTVDE 182


>gi|307708034|ref|ZP_07644503.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC
           12261]
 gi|307615924|gb|EFN95128.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC
           12261]
          Length = 197

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEVNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +       + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDFPAKVAVQASAENQELEE----------AMEAMLALGY 165


>gi|123966258|ref|YP_001011339.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200624|gb|ABM72232.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9515]
          Length = 228

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 76/141 (53%), Gaps = 7/141 (4%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMR 54
           MI  +KG +   ++     Y+LI+ QG+ Y I       + L    + D   +    H++
Sbjct: 1   MISWVKGKLVSSWQTNNKFYILINCQGLGYEIQTIESVFNELNSKNVSDKEIILWLKHIK 60

Query: 55  -QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
            +D   LFGF +   R +F+ + +++G+G+++ + +L++ T  +++ +I   + K+I+ +
Sbjct: 61  KEDSDSLFGFFTKDQRDFFIQILNIKGIGSQIGIALLNKFTLNQIINAISNNDKKLISSV 120

Query: 114 PGISMKIASRIMTELKGKAIS 134
            GI  K+  RI+ ELK K  +
Sbjct: 121 QGIGQKMTDRIILELKSKVFT 141


>gi|307705927|ref|ZP_07642764.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597]
 gi|307620523|gb|EFN99622.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597]
          Length = 197

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEVNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L   V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVAVKASAENQELEE----------AMEAMLALGY 165


>gi|322388581|ref|ZP_08062181.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           infantis ATCC 700779]
 gi|321140501|gb|EFX36006.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           infantis ATCC 700779]
          Length = 197

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172
           A +++ +L+GK +    V   D+           + PS + N     A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVV----VAGDDLPAK-------TAAPSSSDNQELEEAMEAMLALGY 165


>gi|111221574|ref|YP_712368.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a]
 gi|111149106|emb|CAJ60789.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a]
          Length = 252

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V GV  ++ C   TL+ L +IG+  +L     +R+ ++ L
Sbjct: 1   MIASLAGTVRALGPLSAVVEVGGVGLLVQCTPATLARL-RIGEPASLATTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +LQS  GVG ++A  VL       +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFPDADARDVFEILQSAAGVGPKLAQAVLGVHEPDAVRRAVAEEDLAALTKVPGIGRKG 119

Query: 121 ASRIMTELK 129
           A RI+ +L+
Sbjct: 120 AQRIVLDLR 128


>gi|327475180|gb|AEA77185.1| holliday junction DNA helicase [Bacillus sp. 15.4]
          Length = 202

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 90/178 (50%), Gaps = 6/178 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G ++ +  +YV+++  G+ Y I+     L    +  +  T++   H+R+D + L
Sbjct: 1   MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKYENQE-KTIYTYQHVREDILAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++  F+ L +V G+G + A+ +L+     +++ +I  ++ + + + PG+  K 
Sbjct: 60  YGFLSMEEKLLFIKLLNVSGIGPKGALAILASGAPEQVITAIEGEDERFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--QAHICSMPSFAINAISALVNLGYGQDQ 176
           A +++ +LKGK   L  VV      +  E  Q  + +       A  AL  LGY + +
Sbjct: 120 ARQMILDLKGK---LQDVVPDYFPNLFNEGKQETVSNNDELIDEAALALKALGYSERE 174


>gi|269792533|ref|YP_003317437.1| RuvA domain-containing protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100168|gb|ACZ19155.1| RuvA domain protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 194

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 13/164 (7%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101
           G+   L V   +    I L+GF  D +R+ F+LL    GVG ++AMG+L+ +   E++++
Sbjct: 41  GESIRLPVYLSVSDSGISLYGFGDDHERRVFLLLLQASGVGCKMAMGILNSMDKGEVLDA 100

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161
           I   +   I++  G+  K A RI  ELK K  SL                 + S  S   
Sbjct: 101 IASGDVARISRAQGVGPKRAERICFELKDKVTSL--------GIPRGNSGALVSTGSI-- 150

Query: 162 NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             + AL+ LG+ + +A  A+  V  K +++ +D  ++R ALR +
Sbjct: 151 --LEALMGLGFSRGEAAMALGEVRSKGEDLPEDQLLLR-ALRVL 191


>gi|289168757|ref|YP_003447026.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6]
 gi|303259227|ref|ZP_07345205.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP-BS293]
 gi|303260983|ref|ZP_07346932.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263310|ref|ZP_07349233.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS397]
 gi|303265475|ref|ZP_07351375.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS457]
 gi|303267967|ref|ZP_07353769.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS458]
 gi|288908324|emb|CBJ23166.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6]
 gi|302637820|gb|EFL68306.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639645|gb|EFL70102.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP-BS293]
 gi|302642663|gb|EFL73008.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS458]
 gi|302644915|gb|EFL75162.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS457]
 gi|302647083|gb|EFL77307.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS397]
          Length = 197

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165


>gi|296122693|ref|YP_003630471.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM
           3776]
 gi|296015033|gb|ADG68272.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM
           3776]
          Length = 207

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 101/200 (50%), Gaps = 14/200 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP---IRTLSC-LGKIGDFCTL-FVETHMRQ 55
           MI +I G +  L ED V +++    Y +  P    R L   LG++   CT+ +++ + +Q
Sbjct: 1   MITRITGKLVRLSEDIVRLEIGAFEYEVLVPEFVRRQLQPKLGEVVSLCTIDYLDGNPQQ 60

Query: 56  DQI--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
            ++  RL GFLS+ + ++F ++ SV G+G +  +  + R    E+ E+I  Q+ K +  +
Sbjct: 61  GRLVPRLAGFLSETELEFFEMICSVDGMGVKKTLRAMVR-PVREIAEAIEEQSIKELTLL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+   +A RI+ +L+ K    + +V +++        ++ +       A  AL+ LG+ 
Sbjct: 120 PGVGPAMAERIVAKLRRKMTKFALMVAREVPREADVDRNVLT------EAYEALMALGHS 173

Query: 174 QDQATTAVVSVLKKEKNIAD 193
             +A   +  V  ++K   D
Sbjct: 174 SIEARDKIDQVASQKKKFKD 193


>gi|309388950|gb|ADO76830.1| Holliday junction DNA helicase RuvA [Halanaerobium praevalens DSM
           2228]
          Length = 198

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     + V++ + G+ Y +   +   +   ++G    +F  T++R+D ++L
Sbjct: 1   MIGYLEGEVIEAEFNKVILGINGIGYEL--ELAGFTKQPRLGQKLEVFTYTYVREDVLKL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F     +Q F +L +V G+G    + +L+ + A   + +I+ +N   + +I GI  K 
Sbjct: 59  FAFPEKSYKQLFEILITVNGIGPSAGLNILNTMPAARFISAILQKNEVTLKEISGIGPKT 118

Query: 121 ASRIMTELKGK 131
           A R++ EL+ K
Sbjct: 119 AQRLILELQSK 129


>gi|260558373|ref|ZP_05830569.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68]
 gi|260075547|gb|EEW63853.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68]
          Length = 200

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 12/190 (6%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++   + Y I    P R  S   K+     ++V   +R+D   L+GF S  ++Q F+
Sbjct: 16  YIVVETNSIGYQIALGNPYRYSS---KLNQKIKIYVHQVIREDAHLLYGFDSLEEKQLFL 72

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L SV G+G + A+ +++    + L++++   +   + + PG+  K A +++ +LKGK  
Sbjct: 73  RLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFG 132

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
            LS  +    S  ++      +  S A+ A+SA   LGY  D+    V   LK+  N   
Sbjct: 133 ELS--IDTPFSLFDEANTKDATALSEAMEALSA---LGYS-DREIKRVEKQLKEVDNQTT 186

Query: 194 DSQIIRLALR 203
           D + +R AL+
Sbjct: 187 D-EYLRQALK 195


>gi|298529992|ref|ZP_07017394.1| Holliday junction DNA helicase RuvA [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509366|gb|EFI33270.1| Holliday junction DNA helicase RuvA [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 203

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +    +   L+    G+ Y ++     L  +   G+   L     +R+D + 
Sbjct: 1   MIALIRGTLVSFNDKSCLVMTASGLGYEVHVSAMGLQNMPGQGEELELHTSMVVREDALD 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L +   +G + A+ +L   + +++ + I  ++   + Q+PGI  K
Sbjct: 61  LYGFFTRDERETFNVLLNAPKLGPKTALAILGIFSPSQIQKIINTEDEAALTQVPGIGSK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ +LK + +   S   +D       +           + ++ L +LGY   + T 
Sbjct: 121 TARRLILDLKDR-LGFISPQHEDPRPAPGPRG-------VRQDVLAGLTSLGYSAAEVTP 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +  VL+KE ++ D S  IR  L+
Sbjct: 173 LLDEVLEKEPDL-DVSSAIRAVLK 195


>gi|158316901|ref|YP_001509409.1| DNA recombination protein RuvA [Frankia sp. EAN1pec]
 gi|158112306|gb|ABW14503.1| DNA recombination protein RuvA domain I [Frankia sp. EAN1pec]
          Length = 239

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E L     ++DV GV  +++C   TL+ L ++G+   L     +R+ ++ L
Sbjct: 1   MIASVSGTVEVLSPGSAVVDVGGVGVLVWCTPSTLARL-RVGERARLATTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F +LQ   GVG R+A  VL   +   +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFRDADERDVFEILQGAAGVGPRLAQAVLGVHSPDVIRRAVAEEDLATLTKVPGIGRKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ +    SS V    +      A    + +       ALV LGY   +A  A
Sbjct: 120 AQRIVLDLRDRLGPPSSPVPPQRAAAPPPAAADPRLGAAGEQVRDALVGLGYSAKEALDA 179

Query: 181 VVS 183
           VV+
Sbjct: 180 VVA 182


>gi|46199998|ref|YP_005665.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27]
 gi|55980260|ref|YP_143557.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8]
 gi|20455264|sp|Q9F1Q3|RUVA_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81405352|sp|Q72GZ9|RUVA_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24987359|pdb|1IXR|A Chain A, Ruva-Ruvb Complex
 gi|24987360|pdb|1IXR|B Chain B, Ruva-Ruvb Complex
 gi|11559438|dbj|BAB18786.1| Holliday junction binding protein [Thermus thermophilus]
 gi|46197625|gb|AAS82038.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27]
 gi|55771673|dbj|BAD70114.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8]
          Length = 191

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 23  GVCYIIYCPIRTLSCL--GKIGDFCTLFVETHM--RQDQIRLFGFLSDLDRQWFMLLQSV 78
           GV + +  P   L  L  GK      + V TH+  +++ + L+GF  + +   F LL SV
Sbjct: 23  GVGFFLQAPTPFLQALEEGK-----EVGVHTHLLLKEEGLSLYGFPDEENLALFELLLSV 77

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
            GVG +VA+ +LS +    L  +++  +++++    G+  ++A RI  ELKGK       
Sbjct: 78  SGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGK------- 130

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
           V   +    K ++           A+ AL  LG+ + QA   V+ +L +    A    +I
Sbjct: 131 VPPHLLAGEKVESEAAE------EAVMALAALGFKEAQARAVVLDLLAQNPK-ARAQDLI 183

Query: 199 RLALR 203
           + AL+
Sbjct: 184 KEALK 188


>gi|172058107|ref|YP_001814567.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum
           255-15]
 gi|229560031|sp|B1YJR2|RUVA_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171990628|gb|ACB61550.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum
           255-15]
          Length = 197

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 2/137 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  ++V I+V G+ Y I  P       G   +   ++   ++R+DQ  L
Sbjct: 1   MIEFVRGEVAYVCAEFVTIEVGGIGYKIVAPNPFFYRTGD--EQVIVYTYHYVREDQEVL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+G + ++ +++      LVE+I  +    + + PG+  K 
Sbjct: 59  FGFRSRRERALFTKLLGVTGIGPKGSLAIVASGDVDALVEAIEQEKESYLIKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSS 137
           A ++  +LKGK   L+ 
Sbjct: 119 AKQMTLDLKGKLAELAP 135


>gi|152966998|ref|YP_001362782.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans
           SRS30216]
 gi|151361515|gb|ABS04518.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans
           SRS30216]
          Length = 209

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 19/214 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +I  ++G +  +  D  +++V GV  ++     TL+ L ++G    L     +R+D + L
Sbjct: 5   VIASVRGQVLAVRLDSAVVEVGGVGMLVLAAPATLAGL-RVGQEALLHTTLVVREDSLTL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F ++Q+  GVG R+A+ +L+      +  ++  ++   + ++PGI  K 
Sbjct: 64  FGFADADEKEVFEIVQTASGVGPRMALAMLAVHRPDGIRAAVAAEDHAALVRVPGIGKKT 123

Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG--QD 175
           A RI  EL    G     ++ V   +S  +  +  +          + ALV LGY     
Sbjct: 124 AQRICLELGDRLGPPSGTAAPVAAPLSAGDARREQV----------VEALVGLGYPLKHA 173

Query: 176 QATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206
                VV     +   ADD   +  +R ALR +S
Sbjct: 174 GDVVDVVVGATPDAGAADDLDVAATLRAALRHLS 207


>gi|73662426|ref|YP_301207.1| Holliday junction DNA helicase RuvA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|90135921|sp|Q49Y80|RUVA_STAS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72494941|dbj|BAE18262.1| Holliday junction DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 200

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 5/195 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L   +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYIKGTLTELNPTHVVVEASGVGYEIQTP-NSYRFQKYMDHEVVVHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  ++  F+ L  V G+G + A+ +L+  +  ++  +I  +N   + + PGI  K 
Sbjct: 60  YGFINQEEKDMFLSLIKVTGIGPKSALAILASSSPNDVKIAIENENDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK + ++ V       +N +     + P     A+ AL  LGY + + T  
Sbjct: 120 ARQIVLDLKGK-VQINDV--DSSQILNTDTQDHANAPIIK-EALLALEALGYSKRELTKV 175

Query: 181 VVSVLKKEKNIADDS 195
             S+ K+  +  DD+
Sbjct: 176 EKSLSKETFDSVDDA 190


>gi|33861499|ref|NP_893060.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|44888410|sp|Q7V1D3|RUVA_PROMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33634076|emb|CAE19401.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 219

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 15/145 (10%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCL------GKIGDFCTLFVE 50
           MI  IKG +   ++     Y+L++ QG+ Y     I+TL  +       KI +   +   
Sbjct: 1   MISWIKGELVSSWQANNKFYILVNCQGLGY----EIQTLESVFFDINSNKISEKEIILWL 56

Query: 51  THMR-QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV 109
            H++ +D   LFGF +   R +F+ + +++G+G+++ M +L++ +  +L+ +I   + K 
Sbjct: 57  KHIKKEDSDMLFGFSTKDQRDFFIQILNIKGIGSQIGMSLLNKFSLNQLITAISNNDKKS 116

Query: 110 IAQIPGISMKIASRIMTELKGKAIS 134
           I+ + GI  K+  RI+ ELK K I+
Sbjct: 117 ISTVQGIGQKMTERIILELKSKVIN 141


>gi|148983581|ref|ZP_01816900.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|149017853|ref|ZP_01834312.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483820|ref|ZP_02708772.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1873-00]
 gi|168492137|ref|ZP_02716280.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC0288-04]
 gi|194397075|ref|YP_002036885.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54]
 gi|225853792|ref|YP_002735304.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA]
 gi|225855950|ref|YP_002737461.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           P1031]
 gi|225858040|ref|YP_002739550.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           70585]
 gi|226698742|sp|B5E6D0|RUVA_STRP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767389|sp|C1CAI9|RUVA_STRP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767392|sp|C1CBY3|RUVA_STRZJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767393|sp|C1CI73|RUVA_STRZP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147923728|gb|EDK74840.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147931417|gb|EDK82395.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|172042891|gb|EDT50937.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1873-00]
 gi|183573620|gb|EDT94148.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC0288-04]
 gi|194356742|gb|ACF55190.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54]
 gi|225721170|gb|ACO17024.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           70585]
 gi|225722475|gb|ACO18328.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA]
 gi|225726352|gb|ACO22204.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           P1031]
 gi|301799335|emb|CBW31870.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           OXC141]
          Length = 197

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEDQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165


>gi|270291966|ref|ZP_06198181.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143]
 gi|270279494|gb|EFA25336.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143]
          Length = 197

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHVS-NPYAYSGQVNQETQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165


>gi|149175963|ref|ZP_01854580.1| probable holliday junction DNA helicase ruvA [Planctomyces maris
           DSM 8797]
 gi|148845117|gb|EDL59463.1| probable holliday junction DNA helicase ruvA [Planctomyces maris
           DSM 8797]
          Length = 206

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 22/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP---IRTLSCLGKIGDFCTL----FVETHM 53
           MI  I+G +  L     +I V    Y ++ P    R L  L  IG   +L    ++E + 
Sbjct: 1   MITNIRGELIELSLTEAIISVGAFDYEVFIPEFVRRQLQPL--IGSEISLKTIQYIEGNP 58

Query: 54  RQDQI--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
           ++ ++  RL GF+S  +R++F L+ SV GVG +  +  + R    E+  +I  ++ K + 
Sbjct: 59  QKGRLTPRLIGFMSHAEREFFELVCSVDGVGVKKTLRAMVR-PVKEVATAIEEKDIKQLT 117

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
            +PGI   +A RI+ +L+ K    + +V ++      E+ H          A  AL++LG
Sbjct: 118 TLPGIGPAVAERIVAKLRRKMTKFALIVAKEFPA---EEGHTDVFS----EAYEALLSLG 170

Query: 172 YGQDQATTAVVSVL---KKEKNIAD 193
           Y   +A T V ++    KK K+I +
Sbjct: 171 YSATEARTKVETIAAEGKKFKSIEE 195


>gi|32266013|ref|NP_860045.1| Holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC
           51449]
 gi|44888424|sp|Q7VIU0|RUVA_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|32262062|gb|AAP77111.1| holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC
           51449]
          Length = 196

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 13/139 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL---------GKIGDFCTLFVET 51
           MI  ++G I  L   Y  IDV GV Y +   +   S L           +   C   +  
Sbjct: 1   MIVGLRGTIIRLEPMYAEIDVGGVIYGMQMSLNATSMLQTKIDSQPDAPVKIICAQII-- 58

Query: 52  HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
             R+D   LFGF  ++++Q F  L  + GVG +VA+ +LS  T T   + I  ++ + + 
Sbjct: 59  --REDAHLLFGFCEEIEKQTFERLIKISGVGPKVAIAILSTYTPTHFAKIIADKDIEALK 116

Query: 112 QIPGISMKIASRIMTELKG 130
           ++PGI +K A++IM ++ G
Sbjct: 117 KVPGIGVKGAAKIMVDIAG 135


>gi|225164626|ref|ZP_03726870.1| Holliday junction resolvasome DNA-binding subunit-like protein
           [Opitutaceae bacterium TAV2]
 gi|224800771|gb|EEG19123.1| Holliday junction resolvasome DNA-binding subunit-like protein
           [Opitutaceae bacterium TAV2]
          Length = 219

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +        ++++ G  Y +  P+ T   L  +G    L      R+D   L
Sbjct: 1   MITSIQGLLTEATPLRAVVEINGFGYEVNIPVTTAEKLPAVGAKVKLHTIVIYREDAQTL 60

Query: 61  FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S  +R +F L+ + V GVG ++A+ ++SR++   L  +I   +   +++ PGI  K
Sbjct: 61  YGFASPEERDFFRLMIEQVSGVGPKLALTIMSRMSLPVLEGAIRAGDISSLSKCPGIGKK 120

Query: 120 IASRIMTELKGK 131
            A R++ EL+ K
Sbjct: 121 TAERLVVELRAK 132


>gi|323465932|gb|ADX69619.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           helveticus H10]
          Length = 140

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 7/117 (5%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++GF S+ D+  F+ L SV G+G + A+ +++   A  L E+I     K + + PG+  K
Sbjct: 1   MYGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKK 60

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            AS+I+ +LKGK   L   V + +   ++EQ +I   P    +A+ AL+ LGY Q +
Sbjct: 61  TASQIVLDLKGK---LRDYVAR-LDRQDEEQGNI---PPALNDALLALIALGYTQKE 110


>gi|257462985|ref|ZP_05627389.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D12]
 gi|317060603|ref|ZP_07925088.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12]
 gi|313686279|gb|EFS23114.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12]
          Length = 101

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +     +Y  +DV GV Y +Y  +R    + ++G    +++  H+R+ + +L
Sbjct: 1   MFEYLKGFVSYKKPEYFALDVHGVAYRVYISLRMYEKI-ELGQEYQIYIYNHIREGEYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102
            GFL + +R+ F LL SV+G+G  +A+  LS  +  +LV  I
Sbjct: 60  IGFLEEKERKLFELLLSVKGIGISLALAALSTYSVEQLVAYI 101


>gi|291296179|ref|YP_003507577.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279]
 gi|290471138|gb|ADD28557.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279]
          Length = 193

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 13/176 (7%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
           CP  TL+ L + G    L  +  +R+D + LFGF  +   + F LL SV GVG +VA+ +
Sbjct: 30  CPASTLAQLSE-GQEAALHTKLVVREDDLSLFGFADERSLELFELLLSVSGVGPKVALNL 88

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           LS  T   L  ++   + +++    G+  K+A RI  EL+GK    + ++ +    V+  
Sbjct: 89  LSSQTPALLARALAEGDLRLLTAAQGVGKKLAERIALELRGKVP--AHLMGEGGRLVHSS 146

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           Q     +         AL+ LG+ + Q  + V  + +K    A   ++I+LAL+A+
Sbjct: 147 QTEEAEL---------ALITLGFREGQVRSIVAEIAQKNPG-AGTQELIKLALKAL 192


>gi|125719033|ref|YP_001036166.1| Holliday junction DNA helicase RuvA [Streptococcus sanguinis SK36]
 gi|166231448|sp|A3CR11|RUVA_STRSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|125498950|gb|ABN45616.1| Holliday junction DNA helicase ruvA, putative [Streptococcus
           sanguinis SK36]
          Length = 196

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGQLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK ++  S  +        +   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVAAGSPAESKAPVQTADNQELE-------EAMEAMLALGY 164


>gi|170781148|ref|YP_001709480.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189045747|sp|B0REB9|RUVA_CLAMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169155716|emb|CAQ00837.1| holliday junction DNA helicase RuvA [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 214

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  +    +L++V GV Y +   P   L    + G   T+     +R+D + 
Sbjct: 1   MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL--RHGSEATVLTSLVVREDSLT 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    + + F LL  V GVG + A+ VL  +    + +++  ++     ++ GI  K
Sbjct: 59  LFGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I+ +L GK      V Q      +   + + +      + ++AL+ LG+ +  A T
Sbjct: 119 TAKLIVLQLAGKLF----VTQPRTRSASSAASTVTA------DVVTALIGLGWSERVART 168

Query: 180 --AVVSVLKKEKNI-ADDSQIIRLAL 202
                +    E+ + AD  +++R+AL
Sbjct: 169 AVDDAAAAAAEQGLPADMPRLLRVAL 194


>gi|116074623|ref|ZP_01471884.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9916]
 gi|116067845|gb|EAU73598.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9916]
          Length = 224

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 45  CTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104
           CT ++    R+D   L+GFL   +R  F  L SV GVG ++A+ +L    AT LV++I+ 
Sbjct: 56  CTAWIHQVQREDGCMLYGFLEKRERDLFRTLISVNGVGPQMALALLESCGATALVDAIVE 115

Query: 105 QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            + + + Q  G+  + A R+  EL+ +  S  +     +S V++       +    +  +
Sbjct: 116 GDLRQLTQAQGVGKRTAERLAVELRDRLGSWRAPADDGLSLVDRSDLKALPLQGDPLQEL 175

Query: 165 -SALVNLGYGQDQATTAV--VSVLKKEKNIADDSQIIRLALRAIS 206
              L  LGY   +   A+  V+   +     D    +R +LR +S
Sbjct: 176 QQTLEALGYEDLEIRRAMRAVATAAEPPAAGDHDAWLRESLRWLS 220


>gi|296272620|ref|YP_003655251.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM
           7299]
 gi|296096794|gb|ADG92744.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM
           7299]
          Length = 186

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 23/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           MI  I G I       + IDV G+ Y ++    +++C  KI  +  +L     +R+D   
Sbjct: 1   MIVGINGKIIRKEPTLLHIDVNGLVYEVFV---SVNCSSKIIENNVSLHTTYIIREDSQA 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +++ F  +  + GVG +VA+ + S  T +   + +   +  ++ ++PGI  K
Sbjct: 58  LYGFIDVNEKKLFDTVIKINGVGPKVALAICSTFTPSSFSQIVSSNDISMLKRVPGIGPK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            ASRI+ EL G  I  +S   +D    N  +A +            AL +LG+ +D    
Sbjct: 118 GASRILVELSGFVIDGNS--DEDSVGTNMMEASM------------ALESLGFKKD---- 159

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V+S   K  +  + S ++R AL+ +
Sbjct: 160 -VISKALKSCSATNTSDLVREALKKL 184


>gi|225860211|ref|YP_002741720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230115|ref|ZP_06963796.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255022|ref|ZP_06978608.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501981|ref|YP_003723921.1| crossover junction endoribonuclease subunit A [Streptococcus
           pneumoniae TCH8431/19A]
 gi|254767394|sp|C1CP48|RUVA_STRZT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225726584|gb|ACO22435.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237576|gb|ADI68707.1| crossover junction endoribonuclease subunit A [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327390587|gb|EGE88927.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA04375]
          Length = 197

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEDQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + +    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEE----------AMEAMLALGY 165


>gi|317178761|dbj|BAJ56549.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F30]
          Length = 183

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
           I+V+GV Y +   +RT S L + G    L +   +++D   L+GFL + ++  F  L  +
Sbjct: 19  IEVRGVVYEVQVSMRT-SALLQAGQEARLKILQVIKEDVHLLYGFLEESEKILFERLLKI 77

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
            GVG R+A+ +LS  +  E    I  +  K + Q+ GI  K+A +IM +L G        
Sbjct: 78  NGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVQGIGKKLADKIMVDLIG------FF 131

Query: 139 VQQDMSCVNKE 149
           +Q + S V  E
Sbjct: 132 IQDETSPVRNE 142


>gi|33240204|ref|NP_875146.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|44888420|sp|Q7VCI6|RUVA_PROMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33237731|gb|AAP99798.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 222

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           VLI   GV Y +    R+L  L    +      E H R+D  +L GFL+ L+R  F  L 
Sbjct: 21  VLISCSGVGYEVQLLSRSLQLLNTSKELILWVHEVH-REDGSQLIGFLNKLERDLFRKLI 79

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI---PGISMKIASRIMTELKGKAI 133
           SV GVG ++A+ +L +  A +L+ +I     K IAQ+   PG+  K A R++ EL+ K  
Sbjct: 80  SVSGVGPQLAISLLEKNPAEQLISAIT---KKKIAQLTSCPGVGKKTAERLVIELQNK-- 134

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
            LS ++   +   N     +    + A    S L+NL Y   +   A +      K+I  
Sbjct: 135 -LSDLIGSSLKKTNN-HLELEYETNVADEVRSTLLNLDYKNSEIEKAFLEFETSSKSIRS 192

Query: 194 DSQ 196
            +Q
Sbjct: 193 KAQ 195


>gi|194335574|ref|YP_002017368.1| Holliday junction DNA helicase RuvA [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|229560112|sp|B4SCR7|RUVA_PELPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194308051|gb|ACF42751.1| Holliday junction DNA helicase RuvA [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 200

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +  + V+++V G+ Y       T   L + G    LF    +R+D ++L
Sbjct: 1   MFAYFRGKLTSVLPEEVVVEVSGIAYQFLISAATHRQLPEQGSEVFLFSHLVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +RQ F LL    GVG ++A+ +LS ++  ++ ++I+    + +  I G+  K 
Sbjct: 61  YGFSGEEERQLFRLLLLTTGVGPKLALALLSGLSVQDIHDAILTNTPERLYGITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + LS V            A + S      +A++ALV LG+ +     A
Sbjct: 121 AARIILELRDKVLKLSPV------SALASPARLSST-LLRDDAVNALVTLGFSRIIVQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           VV++L++   +  + ++I+ AL +I
Sbjct: 174 VVAILEQNPGLTVE-EVIKAALVSI 197


>gi|296393859|ref|YP_003658743.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
           44985]
 gi|296181006|gb|ADG97912.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
           44985]
          Length = 199

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQDQI 58
           MI  I+G    +  D+V+++  G+ + +     T +   +  +    T F+   +R+D  
Sbjct: 1   MIASIRGEAVEVGADHVVVECAGLGHHVVVLPSTAAAATRGAEVRLATSFI---VREDAQ 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF     R  F +L++V GVG ++AM VLS +    L  +I   +   + ++PG+  
Sbjct: 58  TLYGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPVALRRAIGEGDLGALTKVPGVGK 117

Query: 119 KIASRIMTELK----GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           ++A R+  ELK    G   + +++   + S + ++Q             +  LV LG+  
Sbjct: 118 RVAERLALELKEKIGGPPSAAANLGAPEGSALVRQQ------------VVDGLVGLGFPL 165

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLAL 202
             A +A  SV+ +E   A  +  +R AL
Sbjct: 166 KPAESAADSVM-QENPEASPAVALRGAL 192


>gi|56421127|ref|YP_148445.1| Holliday junction DNA helicase RuvA [Geobacillus kaustophilus
           HTA426]
 gi|297529245|ref|YP_003670520.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3]
 gi|81346764|sp|Q5KWQ9|RUVA_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56380969|dbj|BAD76877.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426]
 gi|297252497|gb|ADI25943.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3]
          Length = 194

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    +         T++   ++R+    L
Sbjct: 1   MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGK 131
           A +++ +LKGK
Sbjct: 120 ARQMILDLKGK 130


>gi|261418393|ref|YP_003252075.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61]
 gi|319767648|ref|YP_004133149.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52]
 gi|261374850|gb|ACX77593.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61]
 gi|317112514|gb|ADU95006.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52]
          Length = 194

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    +         T++   ++R+    L
Sbjct: 1   MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGK 131
           A +++ +LKGK
Sbjct: 120 ARQMILDLKGK 130


>gi|194476717|ref|YP_002048896.1| putative holliday junction DNA helicase RuvA [Paulinella
           chromatophora]
 gi|171191724|gb|ACB42686.1| putative holliday junction DNA helicase RuvA [Paulinella
           chromatophora]
          Length = 215

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 103/214 (48%), Gaps = 11/214 (5%)

Query: 1   MIGKIKGNI-----EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  ++G +     +G Y +  L++  G+ Y +Y   R    L K  +   L++   +R+
Sbjct: 1   MISWLRGELLKSWQQGTY-NVALLNCGGIGYEVYLNRRDWEDLPKTREILELYIHMLVRE 59

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
            Q  L+GF+   DR  F  + ++ G+G ++A+ + + +    L+E+II  +   + +  G
Sbjct: 60  KQWTLYGFIEFDDRDIFREIININGIGPQLALALQTELRGPRLIEAIINGDLVTLTKAHG 119

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I  + A R+ TEL+ + ++L    +  +      Q  + +      +  + L  LGY + 
Sbjct: 120 IGRRTAERLSTELRSRFVNLYHTNEVYLKQEGSIQG-VLNDSDLVHDIQNTLKTLGYNKL 178

Query: 176 QATTAVVSVLKKEKNIADDSQI---IRLALRAIS 206
           +   A ++ LK + ++ ++S     +R AL  +S
Sbjct: 179 EIQRA-INKLKSKSSLVENSDFDVWLREALHWLS 211


>gi|257870592|ref|ZP_05650245.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2]
 gi|257804756|gb|EEV33578.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2]
          Length = 196

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 99/203 (48%), Gaps = 24/203 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G +  ++  Y++++  G+ Y +       +  GK+     +++   +R+D   L+GF + 
Sbjct: 7   GKVTDIFPAYIVVETHGIGYQVAFG-NPYAFSGKLNQEVKIYLHQVIREDAHSLYGFSTL 65

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
             +Q F+ L SV G+G + A+ +++      L+ ++   +   + + PG+  K A +++ 
Sbjct: 66  EGKQLFLKLISVSGIGPKSALAIMANEDHAGLITAVENGDVTYLTKFPGVGKKTAQQMIL 125

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVL 185
           +LKGK   L          V +E     ++ + A++ A++AL  LGY + +       + 
Sbjct: 126 DLKGKVAEL----------VGEEPTAPVTVANTALDEAMAALKALGYSEKE-------IK 168

Query: 186 KKEKNIADDS-----QIIRLALR 203
           K EK +A ++     + +R AL+
Sbjct: 169 KAEKYLAPNTTKSTDEYLREALK 191


>gi|227534464|ref|ZP_03964513.1| crossover junction endoribonuclease subunit A [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187863|gb|EEI67930.1| crossover junction endoribonuclease subunit A [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 212

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 72/133 (54%), Gaps = 7/133 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M    +G I+ +   Y++IDV G+ +  ++  P        + G+   ++V+  +R +  
Sbjct: 15  MYEYFEGIIQAVTPAYIVIDVHGIGFRLLVANPYHF-----EAGEQKRVYVQLIIRDNDQ 69

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF    D++ F  L +V G+G + A+ +L+ +++  L  +I   + K + + PGI  
Sbjct: 70  TLYGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGK 129

Query: 119 KIASRIMTELKGK 131
           K A++I+ +LKGK
Sbjct: 130 KTAAQIILDLKGK 142


>gi|83590537|ref|YP_430546.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica
           ATCC 39073]
 gi|123725675|sp|Q2RHT6|RUVA_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83573451|gb|ABC20003.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica
           ATCC 39073]
          Length = 202

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLS--CLGKIGDFCTLFVETHMRQDQI 58
           MIG ++G +  +  + +L++  G+ +++    RT++       G    ++ +  +R+D +
Sbjct: 1   MIGYLRGRLHLVTPEGILLETGGIGWLV----RTVTNRSWPAPGTEIAVYTQLVVREDAM 56

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF    +   F LL+ V G+G R A+ +L      +L  +I   +S  +  +PGI  
Sbjct: 57  ELYGFTRPEELHLFTLLRGVNGIGPRGALQILGAAKPEQLSRAIAAGDSAFLTALPGIGA 116

Query: 119 KIASRIMTELK 129
           K A R++ ELK
Sbjct: 117 KKAQRLLLELK 127


>gi|322392518|ref|ZP_08065978.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           peroris ATCC 700780]
 gi|321144510|gb|EFX39911.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           peroris ATCC 700780]
          Length = 197

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 17/177 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKRLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172
           A +++ +L+GK +    V   D+           + PS + N     A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVV----VAGDDLPAK-------TAAPSSSDNQELEEAMEAMLALGY 165


>gi|116494312|ref|YP_806046.1| Holliday junction DNA helicase RuvA [Lactobacillus casei ATCC 334]
 gi|191637648|ref|YP_001986814.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BL23]
 gi|239629698|ref|ZP_04672729.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065824|ref|YP_003787847.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|122264259|sp|Q03B18|RUVA_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560092|sp|B3WC55|RUVA_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116104462|gb|ABJ69604.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus casei
           ATCC 334]
 gi|190711950|emb|CAQ65956.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           casei BL23]
 gi|239528384|gb|EEQ67385.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438231|gb|ADK17997.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|327381703|gb|AEA53179.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W]
 gi|327384869|gb|AEA56343.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II]
          Length = 198

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 72/133 (54%), Gaps = 7/133 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M    +G I+ +   Y++IDV G+ +  ++  P        + G+   ++V+  +R +  
Sbjct: 1   MYEYFEGIIQAVTPAYIVIDVHGIGFRLLVANPYHF-----EAGEQKRVYVQLIIRDNDQ 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF    D++ F  L +V G+G + A+ +L+ +++  L  +I   + K + + PGI  
Sbjct: 56  TLYGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGK 115

Query: 119 KIASRIMTELKGK 131
           K A++I+ +LKGK
Sbjct: 116 KTAAQIILDLKGK 128


>gi|160902900|ref|YP_001568481.1| helix-hairpin-helix DNA-binding motif-containing protein [Petrotoga
           mobilis SJ95]
 gi|254767380|sp|A9BIJ5|RUVA_PETMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160360544|gb|ABX32158.1| helix-hairpin-helix motif [Petrotoga mobilis SJ95]
          Length = 190

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI   IE   ++ VLI + GV  +   P   +    K GD    F    + +    L
Sbjct: 1   MIRKINATIEDFEDEKVLIKI-GVLTLEAYPSLNVIRYFKKGDQYEFFASLEISEWNTSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F   ++R  F  L+ V  +G R+A  +L +  A E ++ I  Q++ +++ +PGI  K 
Sbjct: 60  YIFKDKIERDVFESLKKVSKIGPRIASKILRKTDAEEFIQMINSQDTALLSSLPGIGKKT 119

Query: 121 ASRIMTEL 128
           A R+++EL
Sbjct: 120 AERLISEL 127


>gi|24380422|ref|NP_722377.1| Holliday junction DNA helicase RuvA [Streptococcus mutans UA159]
 gi|44888487|sp|Q8CWW3|RUVA_STRMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24378447|gb|AAN59683.1|AE015030_13 putative Holliday junction DNA helicase RuvA [Streptococcus mutans
           UA159]
          Length = 197

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 87/178 (48%), Gaps = 11/178 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKGN+  +   Y++++  G+ Y+I       S   +I     +++   +R+D   L
Sbjct: 1   MYDYIKGNLTKITAKYIVLETGGLGYVINVA-NPYSFSNQINQAIQIYIHHVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV++I   +   + + P I  K 
Sbjct: 60  YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A +++ +L GK + ++ V   +  +S +N  Q            A+ AL+ LGY  ++
Sbjct: 120 AQQMVLDLAGKFVDINEVSTDKSKVSTINNNQE--------LEEAVEALLALGYKTNE 169


>gi|160934125|ref|ZP_02081512.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753]
 gi|156866798|gb|EDO60170.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753]
          Length = 168

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 10/175 (5%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L  IG    L+   ++R+D + LFGF S  +   F LL SV GVG +V + +LS
Sbjct: 1   MNTQRSLPAIGKEAVLYTHMNVREDAVDLFGFSSLAELNCFKLLTSVSGVGPKVGLAILS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  ++  ++   + K +    G+  K+A R++ ELK K  +L     ++++       
Sbjct: 61  VLSPEQVAVAVAAGDFKTLTMAQGVGNKLAQRVILELKDKLKALGG--GEEVTAAAGVVN 118

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              +    A  A++AL  LGY      + V  V+ K  +     ++IRL L+A++
Sbjct: 119 AAGN----AAEAMNALTVLGY----TPSDVAPVVAKFDSSLPVEELIRLTLKAMA 165


>gi|169829378|ref|YP_001699536.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           sphaericus C3-41]
 gi|229560099|sp|B1HVA4|RUVA_LYSSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|168993866|gb|ACA41406.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           sphaericus C3-41]
          Length = 206

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 26/188 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56
           M   +KG I  +  +Y++++ +G+ + +  P     RT +   +I      +V  H+R+D
Sbjct: 1   MYDYLKGLITRITPEYIVLEQKGIGWQLNTPNPFAFRTSAMEQQI------YVHLHVRED 54

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +   R+ F  L  V G+G + A+ +L+     +++ +I  ++   + + PG+
Sbjct: 55  AQVLYGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDETFLVKFPGV 114

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--------AISALV 168
             K A +++ +LKGK  SL   ++  +     E      +P F ++        AI AL 
Sbjct: 115 GKKTARQMILDLKGKLGSLLETIE--LPSTEDE------LPLFGVHPYKHELEEAILALA 166

Query: 169 NLGYGQDQ 176
            LGY + +
Sbjct: 167 ALGYSEKE 174


>gi|290581353|ref|YP_003485745.1| putative Holliday junction DNA helicase [Streptococcus mutans
           NN2025]
 gi|254998252|dbj|BAH88853.1| putative Holliday junction DNA helicase [Streptococcus mutans
           NN2025]
          Length = 198

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 87/178 (48%), Gaps = 11/178 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKGN+  +   Y++++  G+ Y+I       S   +I     +++   +R+D   L
Sbjct: 2   MYDYIKGNLTKITAKYIVLEAGGLGYVINVA-NPYSFSNQINQAIQIYIHHVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV++I   +   + + P I  K 
Sbjct: 61  YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A +++ +L GK + ++ V   +  +S +N  Q            A+ AL+ LGY  ++
Sbjct: 121 AQQMVLDLAGKFVDINEVSTDKSKVSTINNNQE--------LEEAVEALLALGYKTNE 170


>gi|319946048|ref|ZP_08020297.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           australis ATCC 700641]
 gi|319747856|gb|EFW00101.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           australis ATCC 700641]
          Length = 197

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHVA-NPYAYSGKMNQKVQVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK  + L     Q  + V +E   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKINLDLEDAPAQSKAKVAEENQALEE-------AMEAMLALGY 165


>gi|296875591|ref|ZP_06899662.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433388|gb|EFH19164.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 15912]
          Length = 197

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHVA-NPYAYSGKMNQEVQVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK  + L     Q  + V +E   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKINLDLEDAPAQSKAKVAEENQALEE-------AMEAMLALGY 165


>gi|322390453|ref|ZP_08063973.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 903]
 gi|321142852|gb|EFX38310.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 903]
          Length = 197

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHVA-NPYAYSGKMNQEVQVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK  + L     Q  + V +E   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKINLDLEDAPAQSKAKVAEENQALEE-------AMEAMLALGY 165


>gi|312866920|ref|ZP_07727133.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis
           F0405]
 gi|311097703|gb|EFQ55934.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis
           F0405]
          Length = 197

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHVA-NPYAYSGKMNQEVHVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK  + L     Q  + V +E   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKINLDLEDAPAQSKAKVAEENQALEE-------AMEAMLALGY 165


>gi|283781353|ref|YP_003372108.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM
           6068]
 gi|283439806|gb|ADB18248.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM
           6068]
          Length = 210

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 18/202 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY---IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           MI +I   +  L +D  ++      Y   I     RTLS    +G   +L    ++  D 
Sbjct: 1   MITRITAKLIQLTDDAAILSAPPFDYEVLIAAVSRRTLSS--SVGQEISLHTIHYLDGDP 58

Query: 58  ------IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
                  RL GF+S+++R++F +  SV GVGA+ A+  + R    E+   I  Q+++ ++
Sbjct: 59  SRGKVTPRLVGFVSEVEREFFEMFCSVDGVGAKKALRAMQR-PVQEISVMIEEQDAEGLS 117

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
            +PGI    A RI+ +L+ K    + +V ++ +   + +  +  +      +  AL  LG
Sbjct: 118 SLPGIGAATAERIIAKLRRKMSKFALLVARESAGETEIKRDVVEL------SFEALRTLG 171

Query: 172 YGQDQATTAVVSVLKKEKNIAD 193
           + +  A   + SVLK +K  AD
Sbjct: 172 HSESDARKLLDSVLKSKKKFAD 193


>gi|306826018|ref|ZP_07459354.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304431734|gb|EFM34714.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 197

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQENQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L + V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAVQASNENQELEE----------AMEAMLALGY 165


>gi|262283650|ref|ZP_06061415.1| Holliday junction DNA helicase motor protein [Streptococcus sp.
           2_1_36FAA]
 gi|262260707|gb|EEY79408.1| Holliday junction DNA helicase motor protein [Streptococcus sp.
           2_1_36FAA]
          Length = 197

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 7/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFAAEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +    +   D+S  +  QA   +       A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVV----IAGDDLSAKDAVQA--SNENQELEEAMEAMLALGY 165


>gi|332203341|gb|EGJ17408.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA47368]
          Length = 197

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 15/176 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEDQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +     L   V    S  N+E             A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVAVKASAENQELEE----------AMEAMLALGY 165


>gi|152992417|ref|YP_001358138.1| Holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1]
 gi|166231450|sp|A6Q8H2|RUVA_SULNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151424278|dbj|BAF71781.1| holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1]
          Length = 185

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 2/128 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +E     ++ ++V G+ Y I   I T + + +      LF+   +R+D   L
Sbjct: 1   MIVGMEGIVERRDPTFIHLNVNGIIYEIQVSINTSNAIQE--KRVKLFITQVIREDADLL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +++ F  +  + GVG +V + + S  T     + +  ++  ++ ++PGI  K 
Sbjct: 59  FGFMDTNEKKMFDTVLKINGVGPKVGLAICSTFTPETFAKVVASKDVSMLKRVPGIGPKA 118

Query: 121 ASRIMTEL 128
           ASRI+ EL
Sbjct: 119 ASRILVEL 126


>gi|308271856|emb|CBX28464.1| Holliday junction ATP-dependent DNA helicase ruvA [uncultured
           Desulfobacterium sp.]
          Length = 204

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 13/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58
           MIG ++G +     + +L+ V  V Y I  P   +  L    +GD  TL++  H  + Q 
Sbjct: 1   MIGYLEGKLLKKDSERILLLVNHVGYEILLPAIVMETLNTRSVGDEITLYIYYHQSEKQP 60

Query: 59  R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           +  L GF  ++++++F    SV+ +G   A+  L+ ++  ++  +I  +++  + Q+ GI
Sbjct: 61  KPVLIGFNLEVEKEFFQYFISVEDIGPLKAVKALT-MSVRDISRAIESKDAAALKQLKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175
             + A +I+  L+GK    + + +        EQ +           I  LV+ LGY   
Sbjct: 120 GNRTAQKIIATLEGKMNKFALIRKS-------EQTYDSVSEDIGQKVIDLLVSQLGYKPG 172

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A T VV  LK+ K I     ++    R 
Sbjct: 173 EAKTMVVQALKRNKFITSPEDLLEEVYRG 201


>gi|270290977|ref|ZP_06197200.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4]
 gi|304385248|ref|ZP_07367593.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus
           acidilactici DSM 20284]
 gi|270280373|gb|EFA26208.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4]
 gi|304328455|gb|EFL95676.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus
           acidilactici DSM 20284]
          Length = 195

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 19/163 (11%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           Y++IDV GV Y++       S   K  +   ++V   + + +  L+GF   +D++ F+ L
Sbjct: 16  YIVIDVNGVGYLVNV-ANPYSF--KPDEKQKVYVHQAVSETENTLYGFKKYVDKELFLNL 72

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
             V+G+G + A+ +L+       + ++   +   + + P I  K A +I+ +LKGK  S 
Sbjct: 73  LKVKGIGPKSALAILANDDHQGFIRAVNNDDVNYLKKFPKIGPKAAKQIILDLKGKITS- 131

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQ 174
                      N+    +  MP+   N    AI AL  LGY +
Sbjct: 132 -----------NEPSGPLFEMPTTTNNTLDEAIEALAALGYSE 163


>gi|154174555|ref|YP_001408214.1| Holliday junction DNA helicase RuvA [Campylobacter curvus 525.92]
 gi|166230533|sp|A7GYC2|RUVA_CAMC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|112802462|gb|EAT99806.1| holliday junction DNA helicase RuvA [Campylobacter curvus 525.92]
          Length = 184

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 28/209 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQG-VCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQ 57
           MI  I+G I      +V++   G V Y ++    +L C  K+  G+   L     +R+D 
Sbjct: 1   MIRAIEGIITKKEPAFVVLKTAGGVSYGLFI---SLFCSAKLSKGEKVELNTTQIIREDA 57

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GFL   +++ F +L  + G+GA  AM + S ++      ++I  ++     +PGI 
Sbjct: 58  NLLYGFLDTNEQKMFEMLIKLNGIGASTAMAICSSLSPNAFSNAVINGDADTFKSVPGIG 117

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A RI+ EL             D   ++ E     S+P +   A+ AL  LG+ +++ 
Sbjct: 118 PKTARRIIAEL------------SDAKLISDE-----SVPGYQNEALLALEALGFKREK- 159

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              +V +L   K+ +  S++++ AL+ ++
Sbjct: 160 ---IVKILPDLKSTS-TSELVKEALKKLA 184


>gi|45657032|ref|YP_001118.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|81407392|sp|Q72T73|RUVA_LEPIC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|45600269|gb|AAS69755.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 212

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 39/228 (17%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVETHMR 54
           MI  +KG +  L   +V I+  G+ Y +      Y  ++ L  L ++     +F   + R
Sbjct: 1   MISGLKGILRKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQ--LQIFHSINER 58

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
               +LFGFL++ D+++F +++ +QG+G   A+ +LS  +A +L   +     K + +IP
Sbjct: 59  GQ--KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEVKELEKIP 116

Query: 115 GISMKIASRIMTELKGK---------------AISLSSVVQ--QDMSCVNKEQAHICSMP 157
            +  K + +I  E+K                 ++ L+S++Q  ++M+   K +  I    
Sbjct: 117 KVKGKTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVIL--- 173

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
                    LV LG+ +  A+  V  VLK   +  D  +IIR  L+++
Sbjct: 174 --------GLVQLGFEEKTASKEVDKVLKIFSS-NDPGEIIREILKSL 212


>gi|329116352|ref|ZP_08245069.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD
           2020]
 gi|326906757|gb|EGE53671.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD
           2020]
          Length = 197

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGQLTKITAKYIVVEANGLGYIIYVA-NPYSFSDSVNQQVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEEEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +       +D +  +K  A           AI AL+ LGY
Sbjct: 120 AQQMILDLAGKFVE----APKDSAPTSKANAGGNLQLD---EAIEALLALGY 164


>gi|148272996|ref|YP_001222557.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|166230540|sp|A5CS07|RUVA_CLAM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147830926|emb|CAN01870.1| Holliday junction DNA helicase subunit [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 214

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  +    +L++V GV Y +   P   L    + G   T+     +R+D + 
Sbjct: 1   MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL--RNGSEATVLTSLVVREDSLT 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    + + F LL  V GVG + A+ VL  +    + +++  ++     ++ GI  K
Sbjct: 59  LFGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I+ +L GK        +   S  +   A +          ++AL+ LG+ +  A T
Sbjct: 119 TAKLIVLQLAGKLFVTQPRARSATSAASTVTADV----------VTALIGLGWSERVART 168

Query: 180 AVVSVLKKEKN---IADDSQIIRLAL 202
           AV        +    AD  +++R+AL
Sbjct: 169 AVDDAAAAAADQGLPADMPRLLRVAL 194


>gi|332685820|ref|YP_004455594.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC
           35311]
 gi|332369829|dbj|BAK20785.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC
           35311]
          Length = 201

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  +   Y++I+  G+ Y I          GK+     +++   +R+D   L
Sbjct: 1   MFEYIIGTITFINPYYLVIETNGIGYQILVS-NPYHYSGKLEKKVKIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L  V G+G + A+ +L+      L+ +I  +N+  + + PG+  K 
Sbjct: 60  YGFREMEEKQLFLKLIGVSGIGPKSALAILALEDHGGLINAIADENASYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A +++ +LKGK   L        +  N+ +         A+N A+ AL  LGY  D+   
Sbjct: 120 AQQMVLDLKGKLDELEMTPTAVKAMTNQPKVKTNQ----ALNEALEALCALGY-NDREIK 174

Query: 180 AVVSVLKKEKNIADD---SQIIRLALR 203
            +   LK   + + D   SQ ++L ++
Sbjct: 175 RITPDLKSMDSQSTDQYLSQALKLIMK 201


>gi|260893478|ref|YP_003239575.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
 gi|260865619|gb|ACX52725.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
          Length = 193

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 19/181 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G++        +I V G+   ++ P+     L   G    L+    +R+D+  +
Sbjct: 1   MLAFLRGSVLEKERGRAVILVGGMGLEVFLPLSLYERLPAKGGEVELYTCLLLREDRPEI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R +F+ L  + GVG + A+ +LS  +  EL E+I  ++ + +  +PG+  K 
Sbjct: 61  YGFGDREERDFFLRLLKIGGVGPKTALALLSCFSVEELREAIRSEDLEKLTVVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK          ++  + V  E A          +A++AL+NLGY + +A  A
Sbjct: 121 ARRLLLELK----------EEKGAPVEGEAAA---------DAVAALINLGYRRREAEEA 161

Query: 181 V 181
           V
Sbjct: 162 V 162


>gi|94991379|ref|YP_599479.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS10270]
 gi|123382379|sp|Q1JEH4|RUVA_STRPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94544887|gb|ABF34935.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes
           MGAS10270]
          Length = 198

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172
           A +++ +L GK +              +E  H  +  + A N     AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165


>gi|325686747|gb|EGD28773.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK72]
          Length = 218

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK      VV  D    +K    I         A+ A++ LGY
Sbjct: 142 AQQMVLDLEGK------VVVADGPAESKAPVQIVDNQELE-EAMEAMLALGY 186


>gi|169333981|ref|ZP_02861174.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258698|gb|EDS72664.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM
           17244]
          Length = 199

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 106/215 (49%), Gaps = 26/215 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQ 57
           M   IKG++  + E Y+ I+ + GV +++     T + L  I D   + V T+M  R++ 
Sbjct: 1   MFDYIKGDVTDIREGYLTIENKSGVGFLLNVSENTATDL--INDREDVKVYTYMAVREND 58

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + LFGF +  +R+ F  L +V  +G ++A+ +LS ++   +V +I+ ++ K +    G+ 
Sbjct: 59  VSLFGFSTLFEREIFFKLLTVPKIGPKIALSILSALSPNMIVAAIMNKDYKSLCTANGVG 118

Query: 118 MKIASRIMTELKGKAISLSSVVQ---QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
            K A +I+  L+ K   L  + +    DM+  N  +            AI  L +LG+ +
Sbjct: 119 KKAAEQIVVTLQDKFGDLPEIEEITVNDMNINNDLKDE----------AILGLTSLGFDR 168

Query: 175 DQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206
             A   V     +E ++ DD     I+ LAL+ ++
Sbjct: 169 AYAAKIV-----REISVDDDLTIEDILSLALQKVN 198


>gi|15675869|ref|NP_270043.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes M1 GAS]
 gi|21911339|ref|NP_665607.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS315]
 gi|28896713|ref|NP_803063.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes SSI-1]
 gi|71911615|ref|YP_283165.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS5005]
 gi|94995290|ref|YP_603388.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS10750]
 gi|54039576|sp|P66752|RUVA_STRP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042204|sp|P66751|RUVA_STRP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123257497|sp|Q1J492|RUVA_STRPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13623103|gb|AAK34764.1| putative Holiday junction DNA helicase [Streptococcus pyogenes M1
           GAS]
 gi|21905554|gb|AAM80410.1| putative Holiday junction DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811967|dbj|BAC64896.1| putative Holliday junction DNA helicase [Streptococcus pyogenes
           SSI-1]
 gi|71854397|gb|AAZ52420.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94548798|gb|ABF38844.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes
           MGAS10750]
          Length = 198

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172
           A +++ +L GK +              +E  H  +  + A N     AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165


>gi|56808549|ref|ZP_00366283.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Streptococcus pyogenes M49 591]
          Length = 198

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172
           A +++ +L GK +              +E  H  +  + A N     AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165


>gi|50915147|ref|YP_061119.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS10394]
 gi|139474559|ref|YP_001129275.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str.
           Manfredo]
 gi|68053071|sp|Q5X9H7|RUVA_STRP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166231446|sp|A2RGV1|RUVA_STRPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|50904221|gb|AAT87936.1| Holliday junction DNA helicase [Streptococcus pyogenes MGAS10394]
 gi|134272806|emb|CAM31083.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str.
           Manfredo]
          Length = 198

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172
           A +++ +L GK +              +E  H  +  + A N     AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165


>gi|94989443|ref|YP_597544.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS9429]
 gi|94993332|ref|YP_601431.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS2096]
 gi|123080353|sp|Q1JJH3|RUVA_STRPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123382245|sp|Q1J9C4|RUVA_STRPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94542951|gb|ABF33000.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94546840|gb|ABF36887.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes
           MGAS2096]
          Length = 198

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +          +  NK  A    +      AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK--AGNTQLDE----AIEALLALGY 165


>gi|88856266|ref|ZP_01130926.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
 gi|88814585|gb|EAR24447.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
          Length = 205

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC-PIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +       ++I+V GV   +   P   LS   ++G    L     +R+D + 
Sbjct: 1   MISSLRGTVLAAVGTSIVIEVGGVGLSVSVIPEHALSV--RVGAETQLNTVLIVREDDLS 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +   F LL+ V GVG + AMGVL+ +T  ++  ++  +N     ++ GI  K
Sbjct: 59  LYGFRTREELDVFALLRGVTGVGPKSAMGVLAALTPDDIARAVAEENDSAFRKVTGIGPK 118

Query: 120 IASRIMTELKGK 131
            A  I+  L GK
Sbjct: 119 TAKLIVLNLTGK 130


>gi|323350703|ref|ZP_08086364.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis VMC66]
 gi|322123123|gb|EFX94814.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis VMC66]
          Length = 218

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGQLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK ++   + +        +   +         A+ A++ LGY
Sbjct: 142 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQELEE-------AMEAMLALGY 186


>gi|71904448|ref|YP_281251.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS6180]
 gi|90135995|sp|Q48QW4|RUVA_STRPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71803543|gb|AAX72896.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 198

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +          +  NK  A    +      AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK--AGNTQLDE----AIEALLALGY 165


>gi|284044634|ref|YP_003394974.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684]
 gi|283948855|gb|ADB51599.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684]
          Length = 198

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 23/159 (14%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y +     TL  +   G   TL     +R D ++L+GF ++ +R  F++L  VQ VG +V
Sbjct: 31  YRLAVSSETLKQVPAAGKRVTLHSHLIVRDDALQLYGFATEEERDLFLMLLGVQSVGPKV 90

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA-------ISLSSV 138
           A+ VLS  T  EL+ ++   ++     +PGI  + A RI+ EL+ KA           SV
Sbjct: 91  ALAVLSGGTPRELLGALAAGDAARFQAVPGIGKRTAERIIVELREKAGVAVPDDAVHGSV 150

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
              D   + +E                 LV LG+  D+A
Sbjct: 151 ASDDPRTLARE----------------GLVGLGFSLDEA 173


>gi|325697267|gb|EGD39153.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK160]
          Length = 196

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGQLHQEAKVYVHQVVREDTELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK      VV  D    +K              A+ A++ LGY
Sbjct: 120 AQQMVLDLEGK------VVAADGPSESKAPVQTADNQELE-EAMEAMLALGY 164


>gi|324992648|gb|EGC24569.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK405]
 gi|324995823|gb|EGC27734.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK678]
 gi|327460051|gb|EGF06390.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1]
 gi|327488641|gb|EGF20441.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1058]
          Length = 218

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGY 172
           A +++ +L+GK      VV  D    +K  A + +M +  +  A+ A++ LGY
Sbjct: 142 AQQMVLDLEGK------VVAADGPSESK--APVQTMDNQELEEAMEAMLALGY 186


>gi|209560229|ref|YP_002286701.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes NZ131]
 gi|226698743|sp|B5XJ07|RUVA_STRPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209541430|gb|ACI62006.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes NZ131]
          Length = 198

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTHSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172
           A +++ +L GK +              +E  H  +  + A N     AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165


>gi|332360160|gb|EGJ37974.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1056]
          Length = 196

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG +  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIVSKITAKYIVLEVNSIGYILHVA-NPYAYSGRLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK ++   + +        +   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQELE-------EAMEAMLALGY 164


>gi|325695327|gb|EGD37227.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK150]
 gi|332365307|gb|EGJ43070.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1059]
          Length = 218

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK ++   + +        +   +         A+ A++ LGY
Sbjct: 142 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQELEE-------AMEAMLALGY 186


>gi|331701280|ref|YP_004398239.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128623|gb|AEB73176.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           buchneri NRRL B-30929]
          Length = 199

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 12/201 (5%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62
           ++G +  +   ++++ V GV Y+I    P R      K+     +++   +    I LFG
Sbjct: 5   LEGTVVDITPTHIVLLVGGVGYLINTADPYRFNVDEKKV---IRVYIYQSVSDTAILLFG 61

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           F +  D+Q F  L SV G+G + A+ +L+      L+ +I  ++ K + + PG+  K A 
Sbjct: 62  FATIEDKQIFEKLISVSGIGPKSALAILAGNDRDGLITAINNEDVKFLTKFPGVGKKTAR 121

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           +I+ +++GK   L  +    +S      ++  S P  A +A+SAL  LGYG  Q   A+ 
Sbjct: 122 QIILDMQGK---LDDIATNGVSLAQPLGSNEKS-PELA-DALSALEALGYGAKQ-IAAIE 175

Query: 183 SVLKKEKNIADDSQIIRLALR 203
             L K+ +++ D + + L L+
Sbjct: 176 PDLVKQADLSTD-EYLSLGLK 195


>gi|87124238|ref|ZP_01080087.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9917]
 gi|86167810|gb|EAQ69068.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9917]
          Length = 216

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G+    +E       LI   GV Y +    R ++   +     TL++    ++D
Sbjct: 1   MIGWLQGDRIDTWEQGSRRGWLIACAGVGYEVQLSERHMADPEQQRQ-VTLWIHQVQKED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F  L SV GVG +V + +L+   A ELV++I+  + + ++Q  G+
Sbjct: 60  GSSLFGFPERRERDLFRQLISVNGVGPQVGLALLACWRADELVDAILDGDVRRLSQAQGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGY 172
             + A R+  EL+ +  +    +   +S V+++  H   + +  +  +   L +LGY
Sbjct: 120 GKRTAERLAVELRDRLAAGRHQMDAPLSLVDRQDLHALPIAADPLQDLQLTLTSLGY 176


>gi|324989663|gb|EGC21607.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK353]
 gi|332363708|gb|EGJ41488.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK49]
          Length = 218

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNVGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK      VV  D    +K              A+ A++ LGY
Sbjct: 142 AQQMVLDLEGK------VVAADGQAESKAPVQTADNQELE-EAMEAMLALGY 186


>gi|282852794|ref|ZP_06262136.1| holliday junction DNA helicase RuvA, N-terminal domain protein
           [Lactobacillus gasseri 224-1]
 gi|282556536|gb|EFB62156.1| holliday junction DNA helicase RuvA, N-terminal domain protein
           [Lactobacillus gasseri 224-1]
          Length = 122

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV++DV G+ Y I CP        +     T++VE  +R   I L
Sbjct: 1   MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSY---QENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  ++
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKRL 117

Query: 121 ASRI 124
             R+
Sbjct: 118 LLRL 121


>gi|157150589|ref|YP_001451298.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189045776|sp|A8AZT8|RUVA_STRGC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157075383|gb|ABV10066.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 196

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK ++   + +        +   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQELE-------EAMEAMLALGY 164


>gi|297624718|ref|YP_003706152.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM
           17093]
 gi|297165898|gb|ADI15609.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM
           17093]
          Length = 208

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 13/177 (7%)

Query: 28  IYCPIRTLS-CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD-RQWFMLLQSVQGVGARV 85
           ++ P  TL  C  ++G    L     ++++ + L+GF  D D    F  L  V GVG ++
Sbjct: 39  VFAPKPTLMVC--RVGSAVRLHTYFLVKEELLALYGF-HDRDLHTLFTHLIGVSGVGPKL 95

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
           A+ +LS +    L  +I+  ++ ++A  PG+  K+A RI+ +LK K      + ++ ++ 
Sbjct: 96  ALALLSSMQTPLLAGAILQGDAGLLASTPGVGKKMAERIILDLKNK------LPEELLAP 149

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLAL 202
             + +    S P+ A +A+ AL+ LGY + Q    V  +  KE   A    +IR AL
Sbjct: 150 GARGKVTTLSSPA-AEDAVGALLALGYRETQVKGVVAQLALKEPE-AGAETLIRKAL 204


>gi|223933912|ref|ZP_03625874.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591]
 gi|302023155|ref|ZP_07248366.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05HAS68]
 gi|330831910|ref|YP_004400735.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3]
 gi|223897414|gb|EEF63813.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591]
 gi|329306133|gb|AEB80549.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3]
          Length = 196

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++ QGV YI+       +  G++    T++    +R+D   L
Sbjct: 1   MYDYIKGILTKITAKYIVVETQGVGYILQVA-NPYAYSGQVQQEVTVYTHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV +I  +N   + + P I  K 
Sbjct: 60  YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGK 131
           A +++ +L+GK
Sbjct: 120 AQQMILDLEGK 130


>gi|325689191|gb|EGD31198.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK115]
          Length = 218

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGQLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK      VV  D    +K              A+ A++ LGY
Sbjct: 142 AQQMVLDLEGK------VVVADGPAESKAPVQTVDNQELE-EAMEAMLALGY 186


>gi|319940111|ref|ZP_08014465.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           anginosus 1_2_62CV]
 gi|319810825|gb|EFW07152.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           anginosus 1_2_62CV]
          Length = 196

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG +  +   Y++++V  + YI++      +  G++     +FV   +R+D   L
Sbjct: 1   MYEYFKGILSKITAKYIVVEVGQIGYILHVA-NPYAYSGQVNQEIQVFVHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK ++     +Q       +   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVATGVAPKQVAVAATSDNKELEE-------AMEAMLALGY 164


>gi|313682066|ref|YP_004059804.1| holliday junction DNA helicase subunit ruva [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154926|gb|ADR33604.1| Holliday junction DNA helicase subunit RuvA [Sulfuricurvum kujiense
           DSM 16994]
          Length = 187

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G IE      V ++V GV Y ++  + T S +G   +   L     +R+D  +L
Sbjct: 1   MIIGLDGIIEYKEPSSVHLNVNGVIYEVFISLHTYSSIGS--EKVKLHTHHVIREDAQQL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  +  + G+G + A+ + S  T  +    I  ++   + ++PGI  K 
Sbjct: 59  YGFEQKSEKILFEGMLKINGIGPKAALAICSTFTPEQFAGIISSKDINALKKVPGIGPKS 118

Query: 121 ASRIMTELKG 130
           A RIM EL G
Sbjct: 119 AGRIMVELAG 128


>gi|29374722|ref|NP_813874.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583]
 gi|255974579|ref|ZP_05425165.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2]
 gi|256956955|ref|ZP_05561126.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5]
 gi|256964042|ref|ZP_05568213.1| holliday junction DNA helicase RuvA [Enterococcus faecalis
           HIP11704]
 gi|257078631|ref|ZP_05572992.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1]
 gi|257084064|ref|ZP_05578425.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1]
 gi|257087893|ref|ZP_05582254.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6]
 gi|257418785|ref|ZP_05595779.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11]
 gi|294780021|ref|ZP_06745400.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1]
 gi|300862283|ref|ZP_07108363.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD
           Ef11]
 gi|44888456|sp|Q839T6|RUVA_ENTFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29342180|gb|AAO79946.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583]
 gi|255967451|gb|EET98073.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2]
 gi|256947451|gb|EEU64083.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5]
 gi|256954538|gb|EEU71170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis
           HIP11704]
 gi|256986661|gb|EEU73963.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1]
 gi|256992094|gb|EEU79396.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1]
 gi|256995923|gb|EEU83225.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6]
 gi|257160613|gb|EEU90573.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11]
 gi|294452915|gb|EFG21338.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1]
 gi|300848808|gb|EFK76565.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD
           Ef11]
          Length = 204

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 16  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 72

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 73  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 132

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +A   S  + A  A+ AL  LGY
Sbjct: 133 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 170


>gi|315221510|ref|ZP_07863430.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211]
 gi|315189344|gb|EFU23039.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211]
          Length = 196

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG +  +   Y++++V  + YI++      +  G++     +FV   +R+D   L
Sbjct: 1   MYEYFKGILSKITAKYIVVEVGQIGYILHVA-NPYAYSGQVNQELQVFVHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK ++     +Q       +   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVATGVAPKQVAVAATSDNQELEE-------AMEAMLALGY 164


>gi|256855044|ref|ZP_05560405.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8]
 gi|307291531|ref|ZP_07571408.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411]
 gi|256709557|gb|EEU24604.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8]
 gi|306497396|gb|EFM66936.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411]
 gi|315028754|gb|EFT40686.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4000]
          Length = 230

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 42  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 98

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 99  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +A   S  + A  A+ AL  LGY
Sbjct: 159 GELES-SEAAVAAMTATEALTTSNQALA-EALEALSALGY 196


>gi|146317720|ref|YP_001197432.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05ZYH33]
 gi|146319910|ref|YP_001199621.1| Holliday junction DNA helicase RuvA [Streptococcus suis 98HAH33]
 gi|253750976|ref|YP_003024117.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84]
 gi|253752876|ref|YP_003026016.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7]
 gi|253754701|ref|YP_003027841.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407]
 gi|166231447|sp|A4VYN2|RUVA_STRS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166231449|sp|A4VSE3|RUVA_STRSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145688526|gb|ABP89032.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           suis 05ZYH33]
 gi|145690716|gb|ABP91221.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           suis 98HAH33]
 gi|251815265|emb|CAZ50830.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84]
 gi|251817165|emb|CAZ54886.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407]
 gi|251819121|emb|CAR44199.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7]
 gi|292557520|gb|ADE30521.1| Holliday junction DNA helicase RuvA [Streptococcus suis GZ1]
 gi|319757228|gb|ADV69170.1| Holliday junction DNA helicase RuvA [Streptococcus suis JS14]
          Length = 196

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++ QGV YI+       +  G++    T++    +R+D   L
Sbjct: 1   MYDYIKGILTKITAKYIVVETQGVGYILQVA-NPYAYSGQVQQEVTVYTHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV +I  +N   + + P I  K 
Sbjct: 60  YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGK 131
           A +++ +L+GK
Sbjct: 120 AQQMILDLEGK 130


>gi|327463456|gb|EGF09775.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1057]
          Length = 218

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK +      +  +     +   +         A+ A++ LGY
Sbjct: 142 AQQMVLDLEGKVVVADGPAESKVPVQTADNQELEE-------AMEAMLALGY 186


>gi|148239406|ref|YP_001224793.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. WH 7803]
 gi|166231452|sp|A5GKN1|RUVA_SYNPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147847945|emb|CAK23496.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. WH 7803]
          Length = 215

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 3/168 (1%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101
           G  CTL+V    R D   LFGF    +R  F  L  V GVG ++A+ +L      ELV +
Sbjct: 45  GSACTLWVHQVQRDDGSTLFGFCDQQERDLFRTLIGVNGVGPQMALALLDCCRVHELVAA 104

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161
           I+  + K + Q  G+  + A RI  EL+ +  + + + +  +S V++       +    +
Sbjct: 105 IVDGDLKRLTQAQGVGKRTAERIAVELRDRLGNWAPLQEPSLSLVDRSDVKAIPLGEPCL 164

Query: 162 NAIS-ALVNLGYGQDQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206
             +   L  LGY   +   A+ +V       A+D     +R +L+ +S
Sbjct: 165 RDLQITLETLGYEDLEIRRAMRAVASGPDVPAEDDGDAWLRASLKWLS 212


>gi|327467941|gb|EGF13431.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK330]
          Length = 196

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGRLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L+GK ++     +        +   +         A+ A++ LGY
Sbjct: 120 AQQMVLDLEGKVVAADGPAESKAPIQTADNQELE-------EAMEAMLALGY 164


>gi|295112392|emb|CBL31029.1| Holliday junction DNA helicase subunit RuvA [Enterococcus sp. 7L76]
          Length = 218

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 30  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 86

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 87  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 146

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +A   S  + A  A+ AL  LGY
Sbjct: 147 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 184


>gi|134093539|ref|YP_001098614.1| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans]
          Length = 161

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 24/179 (13%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L  +G+   L     +R+D   LFGF +  +R  F  L  + G+GAR A+ +LS
Sbjct: 1   MSTFYNLPGLGEKVALLTHLTVREDAHILFGFGTAEERNVFKQLVKITGIGARTALSILS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI----SLSSVVQQDMSCVN 147
            ++  +L  +I LQ +  + +IPGI  K A R++ ELKGK      +   V+  D +   
Sbjct: 61  GMSVADLSNAITLQEAGRLTKIPGIGKKTAERLLLELKGKLGADLGAAGGVIHSDATS-- 118

Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                         + ++AL+ LGY   +A  A+  V      ++D    I+LAL+A+S
Sbjct: 119 --------------DILNALLALGYSDKEALLAMKQV-PAGTGVSDG---IKLALKALS 159


>gi|312901232|ref|ZP_07760515.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470]
 gi|311291609|gb|EFQ70165.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470]
          Length = 230

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 42  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFCSLEEKQLFL 98

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 99  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +A   S  + A  A+ AL  LGY
Sbjct: 159 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 196


>gi|152990842|ref|YP_001356564.1| Holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2]
 gi|166230575|sp|A6Q3Z8|RUVA_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151422703|dbj|BAF70207.1| holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2]
          Length = 184

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 24/190 (12%)

Query: 16  YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75
           Y+ I+V GV Y ++  +   + + K      L     +R+D   L+GF+   +++ F  L
Sbjct: 16  YLHIEVGGVVYEVFISLNASAAIDK--KQIRLHTTHIIREDSESLYGFVDINEKKMFDRL 73

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
             + GVG +VA+ + S     E V+ +  +N  ++ ++PGI  K A RI+ EL    IS 
Sbjct: 74  IKLNGVGPKVAIAICSTFKPQEFVQIVQQKNVAMLKKVPGIGPKSAQRILVELGEFDISE 133

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
           S+V                        A  AL +LG+ ++Q   A+     +E    D +
Sbjct: 134 SNVTSSAFQ-----------------EASMALQSLGFKKEQIQKAL-----QECTATDTA 171

Query: 196 QIIRLALRAI 205
            +++ AL+ I
Sbjct: 172 SLVKEALKKI 181


>gi|328944741|gb|EGG38902.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1087]
          Length = 218

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAI 133
           A +++ +L+GK +
Sbjct: 142 AQQMVLDLEGKVV 154


>gi|223040201|ref|ZP_03610480.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267]
 gi|222878562|gb|EEF13664.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267]
          Length = 184

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 27/194 (13%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72
           + +L    GV Y +     +L C  K+  G    L +   +R+D   L+GFL   +++ F
Sbjct: 16  NLILKTAGGVSYGVAI---SLFCSAKLERGQSVELNITQIIREDADLLYGFLDSNEQKMF 72

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
             L  + G+GA  AM V S +     + ++   ++  +  +PGI  K A RI+ EL    
Sbjct: 73  ETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAKTARRIIAELSDAK 132

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
           +++                   ++PS+   AI AL +LG+ +++ T A+      E +  
Sbjct: 133 MTMDE-----------------NLPSYQHEAILALESLGFKREKITKAL-----SECDAQ 170

Query: 193 DDSQIIRLALRAIS 206
           +  ++++ AL+ ++
Sbjct: 171 NTGELVKQALKKLA 184


>gi|315143243|gb|EFT87259.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2141]
          Length = 230

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 42  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 98

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 99  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +A   S  + A  A+ AL  LGY
Sbjct: 159 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 196


>gi|306826474|ref|ZP_07459785.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           pyogenes ATCC 10782]
 gi|304431333|gb|EFM34331.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           pyogenes ATCC 10782]
          Length = 198

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +          +  NK  A    +      AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK--AGNTQLDE----AIEALLALGY 165


>gi|257417484|ref|ZP_05594478.1| holliday junction DNA helicase RuvA [Enterococcus faecalis AR01/DG]
 gi|257159312|gb|EEU89272.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ARO1/DG]
          Length = 204

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 16  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLDEKQLFL 72

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 73  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 132

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +A   S  + A  A+ AL  LGY
Sbjct: 133 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 170


>gi|327472197|gb|EGF17634.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK408]
          Length = 218

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M    KG I  +   Y++++V  + YI++   P    S    +     ++V   +R+D  
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSSL---VNQETQIYVHQVVREDAE 79

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  
Sbjct: 80  LLYGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGK 139

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           K A +++ +L+GK ++  S  +        +   +         A+ A++ LGY
Sbjct: 140 KTAQQMVLDLEGKVVAAGSPAESKAPVQTADNQELEE-------AMEAMLALGY 186


>gi|332365447|gb|EGJ43208.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK355]
          Length = 218

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGYLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAIS 134
           A +++ +L+GK ++
Sbjct: 142 AQQMVLDLEGKVVA 155


>gi|227555748|ref|ZP_03985795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22]
 gi|229550642|ref|ZP_04439367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           29200]
 gi|307268982|ref|ZP_07550345.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248]
 gi|307274076|ref|ZP_07555285.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855]
 gi|307284121|ref|ZP_07564291.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860]
 gi|307287114|ref|ZP_07567187.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109]
 gi|227175103|gb|EEI56075.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22]
 gi|229304208|gb|EEN70204.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           29200]
 gi|306501893|gb|EFM71183.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109]
 gi|306503492|gb|EFM72741.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860]
 gi|306509201|gb|EFM78262.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855]
 gi|306514651|gb|EFM83203.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248]
 gi|315026742|gb|EFT38674.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2137]
 gi|315033494|gb|EFT45426.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0017]
 gi|315036485|gb|EFT48417.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0027]
 gi|315148995|gb|EFT93011.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4244]
 gi|315151351|gb|EFT95367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0012]
 gi|315165799|gb|EFU09816.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1302]
 gi|315573928|gb|EFU86119.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309B]
 gi|315581880|gb|EFU94071.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309A]
 gi|327533913|gb|AEA92747.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           faecalis OG1RF]
 gi|329576228|gb|EGG57746.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1467]
          Length = 223

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 35  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 92  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +A   S  + A  A+ AL  LGY
Sbjct: 152 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 189


>gi|116333841|ref|YP_795368.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           brevis ATCC 367]
 gi|122269472|sp|Q03R35|RUVA_LACBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116099188|gb|ABJ64337.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus brevis
           ATCC 367]
          Length = 202

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   + G I  +Y D+V++DV GV Y++    P R       +    T++V   +     
Sbjct: 1   MYEYLHGLITAVYPDHVVVDVNGVGYLVNTANPYRYEVSATAV----TIYVYQAVSDTAQ 56

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF    ++Q F+ L +V G+G + A+ +L+      L+ +I   ++  + + PG+  
Sbjct: 57  TLYGFSDFAEKQLFLKLINVNGIGPKSALAILANPDHQGLMMAIKTNDTGFLTKFPGVGK 116

Query: 119 KIASRIMTELKGKAISLSSVVQQD 142
           K A +I+ +L+ K   L+     +
Sbjct: 117 KTAGQIVLDLQNKLDDLAPATDDN 140


>gi|227518048|ref|ZP_03948097.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104]
 gi|227074484|gb|EEI12447.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104]
          Length = 223

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 35  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLDEKQLFL 91

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 92  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +A   S  + A  A+ AL  LGY
Sbjct: 152 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 189


>gi|205374298|ref|ZP_03227097.1| Holliday junction DNA helicase motor protein [Bacillus coahuilensis
           m4-4]
          Length = 148

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I L+GFL+  ++  FM L +V G+G + A+ +L     + ++ +I  +N   + + PG+ 
Sbjct: 2   ISLYGFLTMEEKLLFMKLLNVTGIGPKGALAILGSGDVSGVIHAIEEENEAFLVKFPGVG 61

Query: 118 MKIASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            K A +++ +LKGK   L  VV     +    E+    S   F   AI AL  LGY  D+
Sbjct: 62  KKTARQMILDLKGK---LQDVVPDFFPNLFQPEKEDTLSSDHFLNEAILALKALGY-SDR 117

Query: 177 ATTAVVSVLKKEKNIADDSQIIR 199
               V   L+ E     D  I R
Sbjct: 118 ELKKVEPKLRNEPGKTSDEYIKR 140


>gi|149194599|ref|ZP_01871695.1| Holliday junction DNA helicase motor protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135343|gb|EDM23823.1| Holliday junction DNA helicase motor protein [Caminibacter
           mediatlanticus TB-2]
          Length = 180

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 26/182 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I       + +DV+ + Y +   + T +   K G F   ++   +++++  L
Sbjct: 1   MIAALKGKIFEKDNGKIFLDVRDIIYELNVSLNTFAN-AKDGIF---YITEIIKENEYSL 56

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +++ F  L  + GVG +VA+ + S  T  E +  I  Q+   + ++PGI  K 
Sbjct: 57  YGFINKNEKKLFDNLIKLNGVGPKVALAICSTFTPDEFISIISSQDINSLKKVPGIGPKS 116

Query: 121 ASRIMTELKGKAI-SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ E+    I +++ ++ Q                     A++AL NLG+ +     
Sbjct: 117 AKRILMEMGDFEIENINPIISQ---------------------AVTALENLGFKRADILK 155

Query: 180 AV 181
           A+
Sbjct: 156 AI 157


>gi|323359952|ref|YP_004226348.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium
           testaceum StLB037]
 gi|323276323|dbj|BAJ76468.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium
           testaceum StLB037]
          Length = 206

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G    + ED ++I V GV + +    +    +  +GD   +     +R+D + L
Sbjct: 1   MISSLHGTAAHVAEDSLVIVVGGVGFSVAVTSQFARTV-HVGDDVHVHTNLIVREDALSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L SV GVG + A+GVLS +T  ++ +++   +     ++ GI  K 
Sbjct: 60  YGFESREELTVFTQLISVTGVGPKSALGVLSSLTVPQIAQAVTDDDDAPFRRVSGIGPKT 119

Query: 121 ASRIMTELKGK 131
           A  I+ +L GK
Sbjct: 120 AKLIVVQLAGK 130


>gi|325678965|ref|ZP_08158563.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8]
 gi|324109469|gb|EGC03687.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8]
          Length = 199

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 9/183 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MI  ++G +     +  +++  GV Y       TL    KI     + + T++  R++ +
Sbjct: 1   MIYSVRGKLIHTDGEMAVVECGGVGYACKTTFYTLQ---KIAGESEVMLYTYLAVRENDV 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF +  + + F +L +V GVG + A+ +LS  + ++   ++   + K + +  GI  
Sbjct: 58  DLFGFSTTEELRCFKMLITVSGVGPKAALSILSSNSPSQFALTVATGDHKSLTKCKGIGA 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A RI+ ELK K    +++  +    V+        M      A++AL+ LGY + +A 
Sbjct: 118 KTAQRIVLELKDKIAKENTISVRGGDTVSAAPV----MGGALQEAVTALIVLGYSEGEAA 173

Query: 179 TAV 181
            A+
Sbjct: 174 QAL 176


>gi|167005424|ref|ZP_02271182.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 135

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%)

Query: 47  LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106
            F+   +++D  + +GFL   +++ F +L  V GVGA  AM V S +      +++ L +
Sbjct: 47  FFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGD 106

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
             V+ ++PGI  K A RI+ EL
Sbjct: 107 ESVLKKVPGIGPKSAKRIIVEL 128


>gi|217032932|ref|ZP_03438407.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128]
 gi|298736165|ref|YP_003728691.1| Holliday junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori B8]
 gi|216945342|gb|EEC24014.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128]
 gi|298355355|emb|CBI66227.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pylori B8]
          Length = 183

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L ++G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLEVGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFESIIATKEVKKLQQVPGIGKKLADKIMVDLIG 129


>gi|88808434|ref|ZP_01123944.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           7805]
 gi|88787422|gb|EAR18579.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           7805]
          Length = 215

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101
           G  CT +V    R+D   L+GF    +R  F  L  V GVG ++A+ +L      ELV +
Sbjct: 45  GTSCTFWVHQVQREDGSTLYGFCEQQERDLFRTLVGVNGVGPQMALALLDCCRVEELVAA 104

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161
           I+  + K + Q  G+  + A RI  EL+ +  + + + +  +S V++       +   ++
Sbjct: 105 IVDGDLKRLTQAQGVGKRTAERIAVELRDRLGAWAPLQEPSLSLVDRSDVKEIPLGETSL 164

Query: 162 NAIS-ALVNLGY 172
             +   L  LGY
Sbjct: 165 RELQITLETLGY 176


>gi|255322240|ref|ZP_05363386.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277]
 gi|255300613|gb|EET79884.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277]
          Length = 184

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 27/194 (13%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72
           + +L    GV Y +     +L C  K+  G    L +   +R+D   L+GFL   +++ F
Sbjct: 16  NLILKTAGGVSYGVAI---SLFCSAKLERGQSVELNITQIIREDADLLYGFLDSNEQKMF 72

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
             L  + G+GA  AM V S +     + ++   ++  +  +PGI  K A RI+ EL    
Sbjct: 73  ETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAKTARRIIAELSDAK 132

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
           +++                   ++PS    AI AL +LG+ +++ T A+      E +  
Sbjct: 133 MTMDE-----------------NLPSHQHEAILALESLGFKREKITKAL-----SECDAQ 170

Query: 193 DDSQIIRLALRAIS 206
           +  ++I+ AL+ ++
Sbjct: 171 NTGELIKQALKKLA 184


>gi|19746986|ref|NP_608122.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS8232]
 gi|24212371|sp|Q8NZ27|RUVA_STRP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|19749241|gb|AAL98621.1| putative Holliday junction DNA helicase [Streptococcus pyogenes
           MGAS8232]
          Length = 198

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 7/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTKDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +          +  NK  A    +      AI AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK--AGNTQLDE----AIEALLALGY 165


>gi|203287496|ref|YP_002222511.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
 gi|226698726|sp|B5RQK6|RUVA_BORRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|201084716|gb|ACH94290.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
          Length = 196

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 49/83 (59%)

Query: 52  HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
           H R D ++LFGFL+  +R+ F  L  V G+G + A+ +LS I       +I  ++  +I+
Sbjct: 51  HFRDDDVKLFGFLNISEREVFENLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLIS 110

Query: 112 QIPGISMKIASRIMTELKGKAIS 134
           ++ GI  KIA +I  +L+GK + 
Sbjct: 111 KVKGIGNKIAGKIFLKLRGKLVK 133


>gi|315174120|gb|EFU18137.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1346]
          Length = 230

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 42  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 98

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 99  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +    S  + A  A+ AL  LGY
Sbjct: 159 GELES-SEAAVAAMTATEVMTTSNQALA-EALEALSALGY 196


>gi|28378879|ref|NP_785771.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1]
 gi|254557084|ref|YP_003063501.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1]
 gi|308181078|ref|YP_003925206.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38258511|sp|Q88V02|RUVA_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28271716|emb|CAD64622.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1]
 gi|254046011|gb|ACT62804.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1]
 gi|308046569|gb|ADN99112.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 203

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCT-LFVETHMRQDQIRLFGF 63
           G +  +   YV+I+V G+ Y +    P R      ++G     +++   + ++ + LFGF
Sbjct: 7   GQVTDVTPGYVVIEVSGIGYKVLTANPYRY-----QVGPTAVKMYIHQAVSENGMSLFGF 61

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
               ++  F  L  V G+G + A+ +L+      L+++I  +N+  +   PG+  K A +
Sbjct: 62  FDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKTAQQ 121

Query: 124 IMTELKGK 131
           I+ +LKGK
Sbjct: 122 IVLDLKGK 129


>gi|203283953|ref|YP_002221693.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
 gi|226698725|sp|B5RLN1|RUVA_BORDL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|201083396|gb|ACH92987.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
          Length = 196

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 49/83 (59%)

Query: 52  HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
           H R D ++LFGFL+  +R+ F  L  V G+G + A+ +LS I       +I  ++  +I+
Sbjct: 51  HFRDDDVKLFGFLNISEREVFEDLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLIS 110

Query: 112 QIPGISMKIASRIMTELKGKAIS 134
           ++ GI  KIA +I  +L+GK + 
Sbjct: 111 KVKGIGNKIAGKIFLKLRGKLVK 133


>gi|207092382|ref|ZP_03240169.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 183

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +R+D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLEAGQKVRLKILQVIREDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|300768015|ref|ZP_07077921.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494364|gb|EFK29526.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 220

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 2/125 (1%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G +  +   YV+I+V G+ Y +         +G       +++   + ++ + LFGF   
Sbjct: 24  GQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPTA--VKMYIHQAVSENGMSLFGFFDA 81

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            ++  F  L  V G+G + A+ +L+      L+++I  +N+  +   PG+  K A +I+ 
Sbjct: 82  DEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKTAQQIVL 141

Query: 127 ELKGK 131
           +LKGK
Sbjct: 142 DLKGK 146


>gi|50954747|ref|YP_062035.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|71649473|sp|Q6AFB5|RUVA_LEIXX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|50951229|gb|AAT88930.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 207

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 26/204 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYII-YCPIRTLSCLGKIGDFCTLFVETHM--RQDQ 57
           MI  ++G +        +IDV GV + +   P    S   ++GD    FV T +  R+D 
Sbjct: 1   MISSLRGTVLSASGGAAVIDVGGVGFAVQLTPDHARSL--RVGDEA--FVHTTLIVREDS 56

Query: 58  IRLFGFLSDLDR-QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           ++LFGF S L++ Q F LL  V GVG + A+ VLS ++  ++ +++   +      + GI
Sbjct: 57  LQLFGF-SGLEQLQVFELLNGVSGVGPKSAISVLSVLSPDQVADAVAAADDAPFRAVSGI 115

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-----ALVNLG 171
             K A  I+  L GK           ++   +  A     PS A +++S     ALV LG
Sbjct: 116 GPKTAKLIVVSLTGK-----------LAACRRPSAPSARRPS-APSSVSDSVLVALVGLG 163

Query: 172 YGQDQATTAVVSVLKKEKNIADDS 195
           + +  A  AV  V+        DS
Sbjct: 164 WPEKVAGEAVAEVIAGTAESERDS 187


>gi|312969902|ref|ZP_07784085.1| ruvA N terminal domain protein [Escherichia coli 1827-70]
 gi|310338187|gb|EFQ03276.1| ruvA N terminal domain protein [Escherichia coli 1827-70]
          Length = 107

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           +LI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L 
Sbjct: 1   MLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 60

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
              GVG ++A+ +LS ++A + V ++  +    + ++PGI  K
Sbjct: 61  KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 103


>gi|169350138|ref|ZP_02867076.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552]
 gi|169292921|gb|EDS75054.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552]
          Length = 186

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           D+++++  G+ Y+IY         GK      +++  ++++D + L+GF +  +++ F+ 
Sbjct: 15  DHIVVENNGIGYLIYVSNPYEFTKGK---EIKVYLYQYVKEDVLLLYGFKTIEEKEMFLK 71

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           L  V+G+G + A+G+L+      ++ +I   +   + +IPGI  K A +I+ +L+GK
Sbjct: 72  LILVKGIGCKTAIGILATGDLERIISAIETNDVNYLKKIPGIGPKAAKQIILDLQGK 128


>gi|303233139|ref|ZP_07319812.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4]
 gi|302480724|gb|EFL43811.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4]
          Length = 208

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 7/132 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI----GDFCTLFVETHMRQD 56
           MI ++ G +  L   +V+IDV GV Y +     + SC   +    G    L     ++++
Sbjct: 1   MIVQLSGTLVELTSSHVIIDVAGVGYELGI---SASCAAHLPAEKGSPLVLLTRMIVKEN 57

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + L+GF    +R  F  + S+ GVG ++A+ +LS  T ++L+     Q+   ++Q+ G+
Sbjct: 58  ALELYGFADAYERLMFDTIISISGVGPKLALAILSLYTPSQLLTIAQTQDVAAMSQVSGV 117

Query: 117 SMKIASRIMTEL 128
             K A R++ EL
Sbjct: 118 GKKKAQRLLLEL 129


>gi|260435378|ref|ZP_05789348.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109]
 gi|260413252|gb|EEX06548.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109]
          Length = 222

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 6   KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLS 65
           +GN  G     VL+   GV Y ++   R    L   GD   L++    R+D   L+GF  
Sbjct: 23  QGNRSG-----VLLLCGGVGYEVHLTERHQQNLPADGDL-NLWIHQVQREDGSSLYGFPL 76

Query: 66  DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +R  F LL SV GVG +  + ++      ELVE+I   + + + +  GI  + A R+ 
Sbjct: 77  RQERDLFRLLISVSGVGPQAGLALMQECKPQELVEAISSGDLRRLCKAQGIGKRTAERLA 136

Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
            EL+    + + V   D +    E      MP+   +  + L  LGY
Sbjct: 137 VELRASIAAFAGV---DPAPSLAEGVSSEQMPASGADVEATLSMLGY 180


>gi|256618467|ref|ZP_05475313.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           4200]
 gi|256761914|ref|ZP_05502494.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3]
 gi|256960754|ref|ZP_05564925.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96]
 gi|257081405|ref|ZP_05575766.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol]
 gi|257088548|ref|ZP_05582909.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188]
 gi|256597994|gb|EEU17170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           4200]
 gi|256683165|gb|EEU22860.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3]
 gi|256951250|gb|EEU67882.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96]
 gi|256989435|gb|EEU76737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol]
 gi|256997360|gb|EEU83880.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188]
          Length = 204

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 16  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 72

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 73  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 132

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +    S  + A  A+ AL  LGY
Sbjct: 133 GELES-SEAAVAAMTATEVVTTSNQALA-EALEALSALGY 170


>gi|109947771|ref|YP_664999.1| Holliday junction DNA helicase RuvA [Helicobacter acinonychis str.
           Sheeba]
 gi|123066165|sp|Q17WH6|RUVA_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|109714992|emb|CAK00000.1| holliday junction DNA helicase [Helicobacter acinonychis str.
           Sheeba]
          Length = 183

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRTASML-QTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|261839678|gb|ACX99443.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           52]
          Length = 183

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query: 36  SCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITA 95
           S L ++G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS  + 
Sbjct: 35  SALLQMGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSP 94

Query: 96  TELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 95  NEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|254779490|ref|YP_003057595.1| Holliday junction DNA helicase RuvA [Helicobacter pylori B38]
 gi|254001401|emb|CAX29394.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pylori B38]
          Length = 183

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT + L ++G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRTAALL-QVGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|312903815|ref|ZP_07762987.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635]
 gi|310632759|gb|EFQ16042.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635]
 gi|315160794|gb|EFU04811.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0645]
 gi|315168284|gb|EFU12301.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1341]
 gi|315579775|gb|EFU91966.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0630]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 42  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 98

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 99  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +    S  + A  A+ AL  LGY
Sbjct: 159 GELES-SEAAVAAMTATEVVTTSNQALA-EALEALSALGY 196


>gi|317011094|gb|ADU84841.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           SouthAfrica7]
          Length = 183

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKKLQQVPGIGKKLADKIMVDLIG 129


>gi|307276309|ref|ZP_07557435.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134]
 gi|312908743|ref|ZP_07767683.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           512]
 gi|312979206|ref|ZP_07790910.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           516]
 gi|306506974|gb|EFM76118.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134]
 gi|310625342|gb|EFQ08625.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           512]
 gi|311287971|gb|EFQ66527.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           516]
 gi|315171308|gb|EFU15325.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1342]
          Length = 223

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 35  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 92  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +    S  + A  A+ AL  LGY
Sbjct: 152 GELES-SEAAVAAMTATEVVTTSNQALA-EALEALSALGY 189


>gi|325106603|ref|YP_004267671.1| Holliday junction DNA helicase subunit RuvA [Planctomyces
           brasiliensis DSM 5305]
 gi|324966871|gb|ADY57649.1| Holliday junction DNA helicase subunit RuvA [Planctomyces
           brasiliensis DSM 5305]
          Length = 208

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 15/199 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQ-- 57
           MI  I+G +  L E    +++      ++ P      L GKIG+   L    ++  +   
Sbjct: 1   MISSIRGELLALEETSAFLNIGAFTIEVFIPDFVRRQLQGKIGEPIELRTMAYLDGNPQK 60

Query: 58  -----IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
                 RL GF S  +  +F L+ SV G+G + A+  + R    E+  +I  Q++K ++ 
Sbjct: 61  GGRMTPRLVGFTSKAELAFFELICSVDGLGIKKALAAIVR-PVREVAAAIEQQDTKTLST 119

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +PGI   +A RI+ +L+ K    + +V Q      +      S          AL+ LG+
Sbjct: 120 LPGIGPAVAERIVAKLRRKMTRFALMVDQASGEAYEPMNDQVS------ETYEALLALGH 173

Query: 173 GQDQATTAVVSVLKKEKNI 191
             D A   + + LK  K  
Sbjct: 174 SADDAHNKIDTALKSGKKF 192


>gi|268679680|ref|YP_003304111.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617711|gb|ACZ12076.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 186

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 23  GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82
           G+ Y ++  + + S   ++ +  +L V   +R+DQ  L+GF+ + +++ F  L  + G+G
Sbjct: 24  GLSYKVFISLFS-SARIQLNEKISLHVSQIIREDQHSLYGFVDENEKKVFDTLVKLNGIG 82

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD 142
              A+ V S ++  +   +++ QN     ++PGI  K A RI+ EL   ++ L   + +D
Sbjct: 83  PSTALAVCSTLSPDDFAHALVSQNISAFQKVPGIGPKSAKRILVELSDFSLQL---LHED 139

Query: 143 MSCVNKEQAHIC 154
            +  + ++A + 
Sbjct: 140 FTNSSLQEASMA 151


>gi|195978973|ref|YP_002124217.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|229560129|sp|B4U0J5|RUVA_STREM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|195975678|gb|ACG63204.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 198

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 11/174 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG +  +   Y++++  G+ Y+I    P     C+ +     T+++   +R+D  
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMITVANPYSFTDCVNQQ---VTIYLHQVIREDAQ 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF S+ ++  F+ L SV G+G   A+ +++      LV +I   +   + + P I  
Sbjct: 58  LLFGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGK 117

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           K A +++ +L GK +         +     ++            AI AL+ LGY
Sbjct: 118 KTAQQMVLDLAGKFVEAPKEESSKLPKAKHQENEQLD------EAIEALLALGY 165


>gi|322386544|ref|ZP_08060171.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           cristatus ATCC 51100]
 gi|321269463|gb|EFX52396.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           cristatus ATCC 51100]
          Length = 204

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M    KG I  +   Y++++V  + YI++   P    S    +     ++V   +R+D  
Sbjct: 9   MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSSL---VNQETQIYVHQVVREDAQ 65

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  
Sbjct: 66  LLYGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGK 125

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           K A +++ +L+GK      VV  D    +K              A+ A++ LGY
Sbjct: 126 KTAQQMVLDLEGK------VVAADGPAESKAPVQTVDNQELE-EAMEAMLALGY 172


>gi|225869418|ref|YP_002745366.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus]
 gi|259495656|sp|C0MGC2|RUVA_STRS7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225702694|emb|CAX00805.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus]
          Length = 198

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG +  +   Y++++  G+ Y+I    P     C+ +     T+++   +R+D  
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMITVANPYSFTDCVNQQ---VTIYLHQVIREDAQ 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF S+ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  
Sbjct: 58  LLFGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDIKYLMRFPKIGK 117

Query: 119 KIASRIMTELKGKAIS 134
           K A +++ +L GK + 
Sbjct: 118 KTAQQMVLDLAGKFVE 133


>gi|124023288|ref|YP_001017595.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963574|gb|ABM78330.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9303]
          Length = 233

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MIGKIKG-NIEGLYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G  +E   +     V++   GV Y +    R LS +    +   L++    R D
Sbjct: 9   MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 68

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F  L  V GVG ++A+ +L      ELVE+I+  + + + Q  G+
Sbjct: 69  GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 128

Query: 117 SMKIASRIMTELKGKAISLS 136
             + A R+  EL+ K    S
Sbjct: 129 GKRTAERLAVELRTKLAEFS 148


>gi|315586830|gb|ADU41211.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori 35A]
          Length = 183

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|108563288|ref|YP_627604.1| Holliday junction DNA helicase RuvA [Helicobacter pylori HPAG1]
 gi|123073768|sp|Q1CSZ2|RUVA_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|107837061|gb|ABF84930.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1]
          Length = 183

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLETGQKVRLKILQVIKEDANLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|308063716|gb|ADO05603.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Sat464]
          Length = 183

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|297380083|gb|ADI34970.1| Holliday junction DNA helicase RuvA [Helicobacter pylori v225d]
          Length = 183

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
             +  E    I  +  K + Q+PGI  K+A +IM +L G        +Q + S V  E
Sbjct: 91  SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG------FFIQDETSPVRNE 142


>gi|33862917|ref|NP_894477.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str.
           MIT 9313]
 gi|44888415|sp|Q7V7T9|RUVA_PROMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33634833|emb|CAE20819.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9313]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MIGKIKG-NIEGLYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G  +E   +     V++   GV Y +    R LS +    +   L++    R D
Sbjct: 1   MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F  L  V GVG ++A+ +L      ELVE+I+  + + + Q  G+
Sbjct: 61  GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 120

Query: 117 SMKIASRIMTELKGKAISLS 136
             + A R+  EL+ K    S
Sbjct: 121 GKRTAERLAVELRTKLAEFS 140


>gi|317180262|dbj|BAJ58048.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F32]
          Length = 183

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|255971607|ref|ZP_05422193.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1]
 gi|257421400|ref|ZP_05598390.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98]
 gi|255962625|gb|EET95101.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1]
 gi|257163224|gb|EEU93184.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98]
 gi|323479298|gb|ADX78737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis 62]
          Length = 204

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 16  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 72

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 73  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 132

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +    S  + A  A+ AL  LGY
Sbjct: 133 GELES-SEAAVAAMTVTEVVTTSNQALA-EALEALSALGY 170


>gi|217034714|ref|ZP_03440116.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10]
 gi|216942827|gb|EEC22324.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10]
          Length = 183

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKTRLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
             +  E    I  +  K + Q+PGI  K+A +IM +L G        +Q + S V  E
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG------FFIQDETSPVRNE 142


>gi|210135073|ref|YP_002301512.1| Holliday junction DNA helicase RuvA [Helicobacter pylori P12]
 gi|210133041|gb|ACJ08032.1| holliday junction DNA helicase [Helicobacter pylori P12]
          Length = 183

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|171778535|ref|ZP_02919662.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282758|gb|EDT48182.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 197

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 14/175 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+V G+ YI+       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVIEVGGLGYIVNVA-NPYSFSDLMNQDIQVYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK + +S     V Q  +  N++             A+ AL+ LGY
Sbjct: 120 AQQMVLDLAGKFVDVSVENGKVSQTKAAANEQLEE----------AMEALLALGY 164


>gi|332638256|ref|ZP_08417119.1| Holliday junction DNA helicase RuvA [Weissella cibaria KACC 11862]
          Length = 199

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 71/133 (53%), Gaps = 7/133 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   + G I  +  +Y++++V G+ Y  ++  P         + +   ++VE  +R+++ 
Sbjct: 1   MYEYLNGVITEVAPNYIVVEVGGIGYRVLVANPYAF-----PMNELERVYVEQIIRENEQ 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFL+  ++  F  L +V G+G + A+ +L+    T LV++I   +   + + PGI  
Sbjct: 56  SLYGFLTADEKLLFQKLLNVSGIGPKSALAILANADHTGLVQAIADNDITFLTKFPGIGK 115

Query: 119 KIASRIMTELKGK 131
           K A +I+ +L+ K
Sbjct: 116 KTAQQIVLDLQNK 128


>gi|188527709|ref|YP_001910396.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Shi470]
 gi|229560035|sp|B2UU34|RUVA_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188143949|gb|ACD48366.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           Shi470]
 gi|308062206|gb|ADO04094.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Cuz20]
          Length = 183

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|317012687|gb|ADU83295.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           Lithuania75]
          Length = 183

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|317177676|dbj|BAJ55465.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F16]
          Length = 183

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKVRLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|301168494|emb|CBW28084.1| holliday junction DNA helicase ruvA [Bacteriovorax marinus SJ]
          Length = 216

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 74/134 (55%), Gaps = 10/134 (7%)

Query: 1   MIGKIKGNIEGLYED---YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           MIG ++G +  ++ D    V++   G+ Y +Y     ++ +   G   ++F+   +++  
Sbjct: 1   MIGHLQGEV--IFSDGVEAVVLTNSGIGYQVY-----INQVLPEGKSASIFISHVIKEAS 53

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  +++ F LL SV+GVG + A  ++  +   +++ SI+  + K + + PGI 
Sbjct: 54  EELYGFKTIREKKLFELLTSVKGVGPKSAFSLVGALGVDQIINSILFDDKKSLTKAPGIG 113

Query: 118 MKIASRIMTELKGK 131
            K A++++ +L+ K
Sbjct: 114 NKAAAQMILDLQNK 127


>gi|330836553|ref|YP_004411194.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta
           coccoides DSM 17374]
 gi|329748456|gb|AEC01812.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta
           coccoides DSM 17374]
          Length = 209

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 9/137 (6%)

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R+D + LFGFLS+ +R  F  LQ+V G+GA+ A+ +L  ++   L+ ++   + K +++I
Sbjct: 58  REDAMVLFGFLSEQERIVFEQLQTVPGIGAKQAVKILGGMSLVTLLTALDQGDVKTLSRI 117

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+  K A R++  L+G      ++V +D +   K  A   S      +   AL  +GY 
Sbjct: 118 PGVGSKTAQRLILALRG------TLVLEDDATPGK--APSPSATGRWTDLSEALQEMGYD 169

Query: 174 QDQATTAVVSVLKKEKN 190
           + +    +++ L+KE  
Sbjct: 170 RKK-VMEILARLEKEHE 185


>gi|15611882|ref|NP_223533.1| Holliday junction DNA helicase RuvA [Helicobacter pylori J99]
 gi|6685958|sp|Q9ZKW9|RUVA_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|4155386|gb|AAD06396.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobacter pylori J99]
          Length = 183

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT + L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRTAALL-QTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|308183035|ref|YP_003927162.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4]
 gi|308065220|gb|ADO07112.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4]
          Length = 183

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 53  MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
           +++D   L+GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q
Sbjct: 52  IKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQ 111

Query: 113 IPGISMKIASRIMTELKG 130
           +PGI  K+A +IM +L G
Sbjct: 112 VPGIGKKLADKIMVDLIG 129


>gi|229547070|ref|ZP_04435795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322]
 gi|312952497|ref|ZP_07771365.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102]
 gi|229307799|gb|EEN73786.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322]
 gi|310629593|gb|EFQ12876.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102]
 gi|315153490|gb|EFT97506.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0031]
 gi|315155061|gb|EFT99077.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0043]
 gi|315158504|gb|EFU02521.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0312]
          Length = 223

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 35  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 92  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             L S  +  ++ +   +    S  + A  A+ AL  LGY
Sbjct: 152 GELES-SEAAVAAMTVTEVVTTSNQALA-EALEALSALGY 189


>gi|312880160|ref|ZP_07739960.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM
           12260]
 gi|310783451|gb|EFQ23849.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM
           12260]
          Length = 198

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +  + IDV G    ++   RT+    + G    L  +  +      L
Sbjct: 1   MIRSLSGVVESARDGALWIDVNGFGLEVFAS-RTVLEQAEEGHPLRLLAQLILTDSGPSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F  L  V+ +G R+AM +L   +  ELV +I  Q+   + + PG+  K 
Sbjct: 60  YGFGGEEERRLFQELIQVKNIGGRMAMALLRVFSVAELVAAIRAQDVASLGRAPGVGAKR 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+ K   L      +   +   +A + S+         AL  LG+ +  A +A
Sbjct: 120 AERICFELRPKLDRLFGTAAGETGPL---EAGVESL-------ADALEGLGFSRSTARSA 169

Query: 181 VVSV---LKKEKNIADD 194
           +      L+ E+   +D
Sbjct: 170 LEEARRSLEGEEPAEED 186


>gi|116493020|ref|YP_804755.1| Holliday junction DNA helicase subunit RuvA [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265516|sp|Q03EQ9|RUVA_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116103170|gb|ABJ68313.1| Holliday junction DNA helicase subunit RuvA [Pediococcus
           pentosaceus ATCC 25745]
          Length = 195

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 19/165 (11%)

Query: 16  YVLIDVQGVCYIIYC--PIR-TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72
           Y+++DV GV +++    P    L    K+      FV   + ++   L+GF    D++ F
Sbjct: 16  YIVVDVNGVGFLVNVANPYSFELDAKQKV------FVHQAVSENDQTLYGFKKAEDKELF 69

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
           + L  V+G+G + A+ +L+    T L+ +I   +   + + P I  K A +I+ +LKGK 
Sbjct: 70  LNLLKVKGIGPKSALAILANDDHTGLINAINNDDVSYLKKFPKIGPKAAQQIILDLKGKV 129

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQ 176
                 V+ ++  +      + +  + A++ A+ AL+ LGY + +
Sbjct: 130 -----AVENEVGTL----FDLSTTSNQALDEALEALIALGYSEKE 165


>gi|306821186|ref|ZP_07454801.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550772|gb|EFM38748.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 201

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 104/210 (49%), Gaps = 22/210 (10%)

Query: 1   MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           MI  I G +  +GL  ++V+++   + Y +     T   L ++    T++    +++D +
Sbjct: 1   MIDYISGTVVQKGL--NHVVVECNNIGYKLLVSQNTSYEL-ELEKISTVYTHLIVKEDDL 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L GF +  +R  F +L SV  +GA++A+ +LS  TAT++   I   +   + ++ G+  
Sbjct: 58  SLIGFSNMSERDMFRILISVSKIGAKIALSILSTYTATQIATFIKSADVVSLGKVSGLGK 117

Query: 119 KIASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           K A R++ ELK K      +  ++ + + D+   +++ + +          I AL  LG+
Sbjct: 118 KTAERLVLELKDKVDIFVGSEEIAKIRKDDIPQEDEKMSQV----------IEALTMLGF 167

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLAL 202
              +A ++   V   +K+ AD   +I+ +L
Sbjct: 168 SNKEAVSSAEKVYALDKD-ADVQSLIKSSL 196


>gi|308184664|ref|YP_003928797.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180]
 gi|308060584|gb|ADO02480.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180]
          Length = 183

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 53  MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
           +++D   L+GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q
Sbjct: 52  IKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQ 111

Query: 113 IPGISMKIASRIMTELKG 130
           +PGI  K+A +IM +L G
Sbjct: 112 VPGIGKKLADKIMVDLIG 129


>gi|322378554|ref|ZP_08053000.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS1]
 gi|322380312|ref|ZP_08054527.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS5]
 gi|321147264|gb|EFX41949.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS5]
 gi|321149016|gb|EFX43470.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS1]
          Length = 183

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 18/168 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQI 58
           MI  ++G I  +   ++ +++ GV Y ++  +R         +   +F+ T   +++D  
Sbjct: 1   MIVGLRGIILQVLPTFIELEINGVVYGVH--VRAGENFESKQE---VFLHTAQIIKEDGH 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFL   +++ F  L  V GVG RVA+ +LS  +  +    I  ++ K + ++PG+  
Sbjct: 56  SLYGFLQRTEKELFERLLKVNGVGPRVALAILSTYSCADFSVCIQSKDLKALQRVPGVGA 115

Query: 119 KIASRIM-----------TELKGKAISLSSVVQQDMSCVNKEQAHICS 155
           K+A +IM           TE+K  AI  + +  Q +     E   ICS
Sbjct: 116 KLAGKIMLDLAGLVLQEETEIKDTAIEQAVLGLQSLGFKTTEAFKICS 163


>gi|332673720|gb|AEE70537.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori 83]
          Length = 183

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKVRLKILQVIKEDVHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|261838266|gb|ACX98032.1| Holliday junction DNA helicase [Helicobacter pylori 51]
          Length = 183

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKARLKILQVIKEDVHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|148927930|ref|ZP_01811336.1| Holliday junction DNA helicase RuvA [candidate division TM7
           genomosp. GTL1]
 gi|147886719|gb|EDK72283.1| Holliday junction DNA helicase RuvA [candidate division TM7
           genomosp. GTL1]
          Length = 187

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +   + D ++IDV GV Y +         L  + +   L+   H+R+    L
Sbjct: 1   MIAHVVGRLTEKFIDSIIIDVNGVGYEVLVTALEYEELA-LQEEVKLYTYHHVREQVEEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL-QNSKVIAQIPGISMK 119
           +GF S   ++ F LL +VQG+G + A+ +LS +   E+V S I   +S  I +  G+  +
Sbjct: 60  YGFSSLAGKRLFELLITVQGIGPKAALAILS-LGDPEVVRSAIASSDSGFIQRASGVGKR 118

Query: 120 IASRIMTELKGK 131
            A R++ +L  K
Sbjct: 119 TADRVVVDLADK 130


>gi|317014289|gb|ADU81725.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           Gambia94/24]
          Length = 183

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT + L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRTAALL-QAGQKARLKILQVIKEDANLLYGFLEEGEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|208434791|ref|YP_002266457.1| Holliday junction DNA helicase [Helicobacter pylori G27]
 gi|226698733|sp|B5Z7P2|RUVA_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|208432720|gb|ACI27591.1| Holliday junction DNA helicase [Helicobacter pylori G27]
          Length = 183

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 53  MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
           +++D   L+GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q
Sbjct: 52  IKEDAHLLYGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQ 111

Query: 113 IPGISMKIASRIMTELKG 130
           +PGI  K+A +IM +L G
Sbjct: 112 VPGIGKKLADKIMVDLIG 129


>gi|312863970|ref|ZP_07724207.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis
           F0396]
 gi|311100536|gb|EFQ58742.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis
           F0396]
          Length = 196

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YII       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK   L +   +  +    E  H          A+ AL+ LGY
Sbjct: 120 AQQMVLDLAGKFAELPTETTK-TTPSQPEGNHQLD------EAMEALLALGY 164


>gi|306834544|ref|ZP_07467657.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           bovis ATCC 700338]
 gi|304423346|gb|EFM26499.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           bovis ATCC 700338]
          Length = 197

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YI+       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVIEAGGLGYIVNVA-NPYSFSDLVNQEVQIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGY 172
           A +++ +L GK +        D+S  N + +   +  +  +  A+ AL+ LGY
Sbjct: 120 AQQMVLDLAGKFV--------DVSVENGKASQTKTATNEQLEEAMEALLALGY 164


>gi|15674189|ref|NP_268364.1| Holliday junction DNA helicase motor protein [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281492890|ref|YP_003354870.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           lactis KF147]
 gi|13878764|sp|Q9CDL2|RUVA_LACLA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|12725272|gb|AAK06305.1|AE006449_11 DNA helicase RuvA [Lactococcus lactis subsp. lactis Il1403]
 gi|281376542|gb|ADA66028.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           lactis KF147]
          Length = 197

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 22/193 (11%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           ++IDV G+ Y+I       +    +     ++V   +R+D   L+GF+++ ++  F+ L 
Sbjct: 17  IVIDVAGIGYLISVA-NPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLI 75

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           SV G+G + A+ +++      L+ +I   + K + + PG+  K A +++ +L GK  +  
Sbjct: 76  SVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATG 135

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK-EKNIADDS 195
           +V    +S ++   A   ++      AI AL  LGY   +AT      LKK EK +A ++
Sbjct: 136 TV---GISLLDAGPAGNLALEE----AIEALQALGY---KATE-----LKKIEKKLAQET 180

Query: 196 -----QIIRLALR 203
                + I+ AL+
Sbjct: 181 GLTSEEYIKSALK 193


>gi|15645501|ref|NP_207676.1| Holliday junction DNA helicase RuvA [Helicobacter pylori 26695]
 gi|3122834|sp|O25549|RUVA_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2314020|gb|AAD07932.1| Holliday junction DNA helicase (ruvA) [Helicobacter pylori 26695]
          Length = 183

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT + L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRTAALL-EAGQKARLKILQVIKEDAHLLYGFLEEGEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|317182188|dbj|BAJ59972.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F57]
          Length = 183

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRT-SALLQAGQKVRLKILQVIKEDVHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|322517658|ref|ZP_08070523.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           vestibularis ATCC 49124]
 gi|322123735|gb|EFX95320.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           vestibularis ATCC 49124]
          Length = 196

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YII       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK   L +   +  +    E  H          A+ AL+ LGY
Sbjct: 120 AQQMVLDLAGKFAELPTETTK-TTPSQPEGNHQLD------EAMEALLALGY 164


>gi|282855630|ref|ZP_06264944.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter
           piscolens W5455]
 gi|282586560|gb|EFB91814.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter
           piscolens W5455]
          Length = 203

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I L+GF  D +R+ F L+   +GVG + A+ +L  ++  E+V ++   + +++  +PGI 
Sbjct: 57  IVLYGFADDTERRTFKLMILTKGVGGKAAISILQYLSPAEIVAAVEQNDIRLLTSVPGIG 116

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A RI  EL  + I     +Q       +           A + + AL +LG+ +  A
Sbjct: 117 KKTAERICFELSDR-IHKKGFIQ----LTGEFHGAPAGDRQAAASVLDALESLGFDRASA 171

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
             A  SV+ ++     +S+ I   LR
Sbjct: 172 VRAYKSVVAEQGEALGESETIMSCLR 197


>gi|257459533|ref|ZP_05624642.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268]
 gi|257442958|gb|EEV18092.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268]
          Length = 184

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 21  VQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
             GV Y +   + T + L  GK+ +   + +   +R+D   L+GFL + +++ F  L  +
Sbjct: 22  ASGVSYALSLSLNTSAKLTQGKLTELACVQI---LREDADLLYGFLDESEKKMFETLIKL 78

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
            GVGA  AM V S +   +    +   ++  +  +PGI  K A RI+ EL
Sbjct: 79  SGVGASTAMAVCSTLAPQDFARCVATGDAATLTSVPGIGPKTARRIIAEL 128


>gi|307637571|gb|ADN80021.1| Holliday junction DNA helicase [Helicobacter pylori 908]
 gi|325996162|gb|ADZ51567.1| Holliday junction DNA helicase [Helicobacter pylori 2018]
 gi|325997758|gb|ADZ49966.1| Holliday junction DNA helicase [Helicobacter pylori 2017]
          Length = 183

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           +RT + L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +LS
Sbjct: 32  MRTAALL-QAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALTILS 90

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 91  SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129


>gi|229824009|ref|ZP_04450078.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271]
 gi|229786363|gb|EEP22477.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271]
          Length = 197

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 14/170 (8%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62
           I+G +  +   +++I   GV Y + C  P R     G++       VE  +R+D + L+G
Sbjct: 7   IQGELVQIQPLHLVISANGVGYRLLCANPYR---WQGELHQQVLCPVELVVREDAMTLYG 63

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           F    ++Q F  L  V G+G + A+ +L+      L+++I   +S  + + PG+  K A 
Sbjct: 64  FRDQQEKQLFNTLLKVSGIGPKSALSILALDDHVGLIQAIDSGDSTYLTKFPGVGKKTAQ 123

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +++ +L G  +   +  Q   S    +Q H+         A+ AL  LGY
Sbjct: 124 QMILDLSGN-LDFQAHAQTQASAPVSQQ-HLE-------EALEALAGLGY 164


>gi|254821998|ref|ZP_05226999.1| Holliday junction DNA helicase RuvA [Mycobacterium intracellulare
          ATCC 13950]
          Length = 105

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI  ++G +  +  D+ +I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1  MIAAVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTEARLITAMIVREDSMTL 59

Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
          +GF     R  F+ L SV GVG R+AM  L+
Sbjct: 60 YGFTDTDTRDLFLTLLSVSGVGPRLAMATLA 90


>gi|293389007|ref|ZP_06633490.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
 gi|291081647|gb|EFE18610.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
          Length = 163

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 6/125 (4%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 35  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 92  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151

Query: 133 ISLSS 137
             L S
Sbjct: 152 GELES 156


>gi|293384502|ref|ZP_06630374.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
 gi|291078181|gb|EFE15545.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
          Length = 163

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 6/125 (4%)

Query: 16  YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           Y++++  G+ Y I    P R     GK+     L++   +R+D   LFGF S  ++Q F+
Sbjct: 35  YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K A +++ +LKGK 
Sbjct: 92  KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151

Query: 133 ISLSS 137
             L S
Sbjct: 152 GELES 156


>gi|326407801|gb|ADZ64872.1| holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 197

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 22/193 (11%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           ++IDV G+ Y+I       +    +     ++V   +R+D   L+GF+++ ++  F+ L 
Sbjct: 17  IVIDVAGIGYLISVA-NPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLI 75

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           SV G+G + A+ +++      L+ +I   + K + + PG+  K A +++ +L GK  +  
Sbjct: 76  SVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAIQMVLDLAGKFDATG 135

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK-EKNIADDS 195
           +V    +S ++   A   ++      AI AL  LGY   +AT      LKK EK +A ++
Sbjct: 136 TV---GISLLDAGPAGNLALEE----AIEALQALGY---KATE-----LKKIEKKLAQET 180

Query: 196 -----QIIRLALR 203
                + I+ AL+
Sbjct: 181 GLTSEEYIKSALK 193


>gi|125625244|ref|YP_001033727.1| Holliday junction DNA helicase motor protein [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|166230561|sp|A2RP07|RUVA_LACLM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|124494052|emb|CAL99052.1| holliday junction DNA helicase ruvA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300072054|gb|ADJ61454.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 197

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 22/193 (11%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           ++ID+ G+ Y+I       +    +     ++V   +R+D   L+GF+++ ++  F+ L 
Sbjct: 17  IVIDLSGIGYLISVA-NPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNESEKALFLRLI 75

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           SV G+G + A+ +++      L+ +I   + K + + PG+  K A +++ +L GK  +  
Sbjct: 76  SVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATG 135

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK-EKNIADDS 195
           +V    +S ++   A   ++      AI AL  LGY   +AT      LKK EK +A ++
Sbjct: 136 AV---GISLLDAAPASNLALEE----AIEALQALGY---KATE-----LKKIEKKLAQEA 180

Query: 196 -----QIIRLALR 203
                + I+ AL+
Sbjct: 181 GLTSEEYIKSALK 193


>gi|288906381|ref|YP_003431603.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34]
 gi|306832428|ref|ZP_07465581.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979395|ref|YP_004289111.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733107|emb|CBI14688.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34]
 gi|304425468|gb|EFM28587.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325179323|emb|CBZ49367.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 197

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YI+       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVVEAGGLGYIVNVA-NPYSFSDLVNQEVQIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGY 172
           A +++ +L GK +        D+S  N + +   +  +  +  A+ AL+ LGY
Sbjct: 120 AQQMVLDLAGKFV--------DVSVENGKASQTKTATNEQLEEAMEALLALGY 164


>gi|293375246|ref|ZP_06621530.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909]
 gi|325840674|ref|ZP_08167125.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1]
 gi|292646144|gb|EFF64170.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909]
 gi|325490238|gb|EGC92572.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1]
          Length = 195

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 23/200 (11%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRLFGF 63
           +KG +    +D+V+I+V G+ Y +Y    T +      D  T +F    + ++ + L+GF
Sbjct: 14  LKGTVAYSAKDFVVIEVAGIGYKVY----TANPYEFRKDEATQVFTHQVVSENDLSLYGF 69

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            +  +   F+ L S +G+G + A  +L+    + L  +I   ++K + + P I  K A +
Sbjct: 70  KTLEEHDLFINLISARGIGPKTACAILAMKDMSGLRHAIENGDAKYLCKFPKIGPKTAQQ 129

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183
           I+ +LKGK +   + +      VN   +           A+ AL  LGYG D+  T V +
Sbjct: 130 IILDLKGKLVVPDAAI-----FVNNSLSE----------ALEALQALGYG-DKELTKVKN 173

Query: 184 VLKKEKNIADDSQIIRLALR 203
             K      D  +II+  L+
Sbjct: 174 AFKDTDASVD--EIIKKGLQ 191


>gi|228476722|ref|ZP_04061391.1| holliday junction DNA helicase RuvA [Streptococcus salivarius
           SK126]
 gi|228251671|gb|EEK10768.1| holliday junction DNA helicase RuvA [Streptococcus salivarius
           SK126]
          Length = 196

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK   L +   +  +    E  H          A+ AL+ LGY
Sbjct: 120 AQQMVLDLAGKFAELPTETTK-TTPSQPEGNHQLD------EAMEALLALGY 164


>gi|116513152|ref|YP_812059.1| Holliday junction DNA helicase motor protein [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123025083|sp|Q02VS6|RUVA_LACLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116108806|gb|ABJ73946.1| Holliday junction DNA helicase subunit RuvA [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 197

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           ++ID+ G+ Y+I       +    +     ++V   +R+D   L+GF+++ ++  F+ L 
Sbjct: 17  IVIDLSGIGYLISVA-NPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNESEKALFLRLI 75

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           SV G+G + A+ +++      L+ +I   + K + + PG+  K A +++ +L GK  +  
Sbjct: 76  SVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATG 135

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +V    +S ++   A   ++      AI AL  LGY
Sbjct: 136 AV---GISLLDAAPAGNLALEE----AIEALQALGY 164


>gi|225871416|ref|YP_002747363.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi
           4047]
 gi|254767388|sp|C0MAS2|RUVA_STRE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225700820|emb|CAW95524.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi
           4047]
          Length = 198

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   IKG +  +   Y++++  G+ Y+I    P     C+ +     T+++   +R+D  
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMITVANPYSFTDCVNQQ---VTIYLHQVIREDAQ 57

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            LFGF S+ ++  F+ L SV G+G   A+ +++      LV +I   +   + + P I  
Sbjct: 58  LLFGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGK 117

Query: 119 KIASRIMTELKGKAIS 134
           K A +++ +L GK + 
Sbjct: 118 KTAQQMVLDLAGKFVE 133


>gi|320102187|ref|YP_004177778.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644]
 gi|319749469|gb|ADV61229.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 14/148 (9%)

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           RL GFLS ++R++F +  SV GVG R A+  + +    +L  +I  Q+   +A  PG+  
Sbjct: 66  RLIGFLSPVEREFFEVFCSVDGVGVRKALRAICQ-PVKDLARTIQDQDVATLATFPGVGE 124

Query: 119 KIASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSM----PSFAINAISALV 168
            +A RI+ +L+ K      A+    V     +  + E A   S     P    +  +AL+
Sbjct: 125 ALAERIVAKLRRKVGKFALALGDPRVPASRFTASDLEDAPHSSSNATDPEIVRDVYAALL 184

Query: 169 NLGYGQDQATTAVVSVLKKEK---NIAD 193
           ++G+ + QA  A+   L  +K   ++AD
Sbjct: 185 SVGHTETQARQAIDQALSSKKAFRSVAD 212


>gi|154508894|ref|ZP_02044536.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798528|gb|EDN80948.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC
           17982]
          Length = 207

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 86/178 (48%), Gaps = 8/178 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD-FCTLFVETHMRQDQIRLFGF 63
           ++G +  +  D++ I V G+ + ++  +      G   D   T+F    +R+D + L+GF
Sbjct: 11  LRGTVASVGLDHIDIVVGGIGFRVH--VTPAFAQGASRDQEMTVFTSMIVREDSMTLYGF 68

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            S  +R  F  + SV G+G ++A+  L+ +   +L  ++  Q+   + +IPG+  K A R
Sbjct: 69  ESADERDVFTKMLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSTLQRIPGVGKKSAQR 128

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           +  E+  K  + ++     +       A   +  + A    +ALV LG+ + QA  A+
Sbjct: 129 MALEIGDKLGTPAA-----LPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181


>gi|322374230|ref|ZP_08048762.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150]
 gi|321276834|gb|EFX53907.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150]
          Length = 196

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSS 137
           A +++ +L GK   L S
Sbjct: 120 AQQMVLDLAGKFAELPS 136


>gi|293192652|ref|ZP_06609606.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus
           F0309]
 gi|292820159|gb|EFF79156.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus
           F0309]
          Length = 207

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 8/178 (4%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD-FCTLFVETHMRQDQIRLFGF 63
           ++G +  +  D++ I V G+ + ++  +      G   D   T+F    +R+D + L+GF
Sbjct: 11  LRGTVASVGLDHIDIVVGGIGFRVH--VTPAFAQGASRDQEMTVFTSMIVREDLMTLYGF 68

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            S  +R  F  L SV G+G ++A+  L+ +   +L  ++  Q+   + +IPG+  K A R
Sbjct: 69  ESADERDVFTKLLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSALQRIPGVGKKSAQR 128

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           +  E+  K  + ++     +       A   +  + A    +ALV LG+ + QA  A+
Sbjct: 129 MALEIGDKLGTPAA-----LPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181


>gi|222823639|ref|YP_002575213.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter
           lari RM2100]
 gi|254766949|sp|B9KFX7|RUVA_CAMLR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222538861|gb|ACM63962.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter
           lari RM2100]
          Length = 183

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           VL    GV Y +Y    +L C G         L +   +++D  +L+GFL   +++ F L
Sbjct: 18  VLKTSSGVSYGVYV---SLFCSGNFEKDQKIELSITQIIKEDSHKLYGFLDTNEQRMFEL 74

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  + G+GA  AM + S +       ++   +  V  ++PGI  K A RI+ EL    I+
Sbjct: 75  LIKISGIGATTAMALCSSLDTNTFYTALQSGDESVFKKVPGIGPKSAKRIIAELSDAKIN 134

Query: 135 LSSVVQ 140
           + +  Q
Sbjct: 135 IENSNQ 140


>gi|297518838|ref|ZP_06937224.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50]
          Length = 101

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y +  P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V +
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNA 101


>gi|78184871|ref|YP_377306.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9902]
 gi|123770922|sp|Q3AVK0|RUVA_SYNS9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78169165|gb|ABB26262.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp.
           CC9902]
          Length = 214

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105
           TL++    R+D   LFGF S  +R  F LL  V GVG +  + +L      ELV +I   
Sbjct: 49  TLWIHQVQREDGSSLFGFPSRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGG 108

Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA 163
           + K + Q  GI  + A R+  +L+    +   +  Q   +  +  EQ     +P    + 
Sbjct: 109 DLKRLCQAQGIGKRTAERLAVDLRTPIAAFGGLEPQPSLVEGLASEQ-----IPEAGEDV 163

Query: 164 ISALVNLGYGQDQATTAVVSV 184
            + L++LGY + +   A+ ++
Sbjct: 164 EATLISLGYDELEIRRAIRAI 184


>gi|320547648|ref|ZP_08041933.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           equinus ATCC 9812]
 gi|320447723|gb|EFW88481.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           equinus ATCC 9812]
          Length = 197

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVVEAGGLGYIINVA-NPYSFSDLMNQDVQIYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + + + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK   +S+ + +      V  EQ            A+ AL+ LGY
Sbjct: 120 AQQVVLDLAGKFADVSMENGLASQAKAVANEQLE---------EAMEALLALGY 164


>gi|296504911|ref|YP_003666611.1| Holliday junction DNA helicase motor [Bacillus thuringiensis
           BMB171]
 gi|296325963|gb|ADH08891.1| Holliday junction DNA helicase motor [Bacillus thuringiensis
           BMB171]
          Length = 150

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K
Sbjct: 3   LYGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKK 62

Query: 120 IASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGY 172
            A +++ +LKGK   L+ VV         D    ++++     +      A+ AL  LGY
Sbjct: 63  TARQMILDLKGK---LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGY 115

Query: 173 GQDQATTAVVSVLKK 187
            + + +  V  +LK+
Sbjct: 116 AEREVSRVVPELLKE 130


>gi|124025644|ref|YP_001014760.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. NATL1A]
 gi|166230583|sp|A2C1Y5|RUVA_PROM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123960712|gb|ABM75495.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. NATL1A]
          Length = 224

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R+D   L+GF+    R  F  + SV G+G ++ M +L      +LV +I  + S ++ + 
Sbjct: 57  REDGTSLYGFIEVNQRDLFREIISVNGIGPQIGMAMLEEFEVPQLVNAIENKESNLLTKT 116

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGY 172
            GI  +IA R++ EL+ K   L      D +    ++    +  S  I+ I  ++N LGY
Sbjct: 117 QGIGKRIAERLIVELRNK---LQRFTDNDKTIHENKKGIEANQFSKYIDEIYLILNSLGY 173

Query: 173 GQDQ--ATTAVVSVLKKEKNI 191
             ++   +  ++++ +KE ++
Sbjct: 174 VDNEIKESIKIITINEKENSL 194


>gi|87308915|ref|ZP_01091053.1| probable holliday junction DNA helicase ruvA [Blastopirellula
           marina DSM 3645]
 gi|87288258|gb|EAQ80154.1| probable holliday junction DNA helicase ruvA [Blastopirellula
           marina DSM 3645]
          Length = 208

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 14/200 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP---IRTL-SCLGKIGDFCTL-FVETHMRQ 55
           MI KI G +  + E  + + V    Y +  P    R L + LG+     T+ ++E + +Q
Sbjct: 1   MITKITGKVTSVSEAVLTLTVGAFEYEVLIPEFVRRQLQNHLGEEVALHTIEYLEGNPQQ 60

Query: 56  DQI--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
            ++  R+ GF   ++R++F L  SV GVG R A+  + R    E+   I  Q++K ++ +
Sbjct: 61  GRLTPRMIGFSDRIEREFFELFCSVDGVGVRKALRAMVR-PVQEVASLIEEQDTKGLSAL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+    A RI+ +L+ K    + +V +     +     + S           L +LG+ 
Sbjct: 120 PGVGPATADRIVAKLRRKVPKFALLVGRSELGEDIAPRDVIS------ETFDVLRSLGHS 173

Query: 174 QDQATTAVVSVLKKEKNIAD 193
           +  A   + + L+++K   D
Sbjct: 174 ESDARRLIDAALEEKKKYKD 193


>gi|78212692|ref|YP_381471.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp.
           CC9605]
 gi|123756909|sp|Q3AKG6|RUVA_SYNSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78197151|gb|ABB34916.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9605]
          Length = 214

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 8/176 (4%)

Query: 1   MIGKIKG----NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           M+G +KG     ++      + ++  GV Y +    R    L +      L++   +  D
Sbjct: 1   MVGWLKGLIVYKLQRGNRSQITLNCNGVGYEVQITQREWLTL-ENDQTIQLWIHQSISAD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
             + FGF S  +R  F  L SV GVG +  M ++    + ELVE+I   + + + +  GI
Sbjct: 60  NWQFFGFKSTQERDIFRELISVNGVGPQAGMALMQECKSQELVEAISNGDLRRLCKAQGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
             + A R+  EL+    S+++    D +    E      MP    +  + L  LGY
Sbjct: 120 GKRTAERLAVELRA---SIAAFAGMDPAPSLAEGVSSEQMPESGADVEATLSMLGY 172


>gi|260222298|emb|CBA31722.1| Holliday junction ATP-dependent DNA helicase ruvA [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 139

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%)

Query: 53  MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
           +R+D   L+GF +  +R+ F  L  + GVG R A+ VLS +   +L +++ LQ +  + +
Sbjct: 2   VREDAQILYGFATSTEREAFRELIKISGVGPRTALSVLSGMDVGDLAQAVTLQEAGRLIK 61

Query: 113 IPGISMKIASRIMT 126
           +PGI  K A R++ 
Sbjct: 62  VPGIGKKTAERLLL 75


>gi|87304141|ref|ZP_01086682.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701]
 gi|87281448|gb|EAQ73513.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701]
          Length = 197

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105
           TL++    R+D   LFGF    +R  F LL  V GVG +  + +L      ELV +I   
Sbjct: 49  TLWIHQVQREDGSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGG 108

Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA 163
           + K + Q  GI  + A R+  +L+    +   +  Q   +  +  EQ     +P    + 
Sbjct: 109 DLKRLCQAQGIGKRTAERLAVDLRTPIAAFGGLDPQPSLVEGLASEQ-----IPEAGEDV 163

Query: 164 ISALVNLGYGQDQATTAVVSV 184
            + L++LGY + +   A+ ++
Sbjct: 164 EATLISLGYDELEIRRAIRAI 184


>gi|116070445|ref|ZP_01467714.1| DNA recombination protein, RuvA [Synechococcus sp. BL107]
 gi|116065850|gb|EAU71607.1| DNA recombination protein, RuvA [Synechococcus sp. BL107]
          Length = 214

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105
           TL++    R+D   LFGF    +R  F LL  V GVG +  + +L      ELV +I   
Sbjct: 49  TLWIHQVQREDGSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPHELVAAISGG 108

Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA 163
           + K + Q  GI  + A R+  +L+    +   +  Q   +  +  EQ     +P    + 
Sbjct: 109 DLKRLCQAQGIGKRTAERLAVDLRTPIAAFGGLDPQPSLVEGLASEQ-----IPEAGEDV 163

Query: 164 ISALVNLGYGQDQATTAVVSV 184
            + L++LGY + +   A+ ++
Sbjct: 164 EATLISLGYDELEIRRAIRAI 184


>gi|116627021|ref|YP_819640.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus
           LMD-9]
 gi|122268374|sp|Q03MX8|RUVA_STRTD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116100298|gb|ABJ65444.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           thermophilus LMD-9]
 gi|312277481|gb|ADQ62138.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           thermophilus ND03]
          Length = 196

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKHIVIETNGLGYIVTVA-NPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSS 137
           A +++ +L GK   L +
Sbjct: 120 AQQMVLDLAGKFAELPA 136


>gi|72382108|ref|YP_291463.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str.
           NATL2A]
 gi|90135557|sp|Q46L68|RUVA_PROMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72001958|gb|AAZ57760.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus
           marinus str. NATL2A]
          Length = 224

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 6/141 (4%)

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R+D   L+GF+    R  F  + SV G+G ++ M +L      +LV +I  + S ++ + 
Sbjct: 57  REDGTSLYGFIEVNQRDLFREIISVNGIGPQIGMAMLEEFEVPQLVNAIENKESNLLTKT 116

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGY 172
            GI  +IA R++ EL+ K   L      D +    +     +  S  I+ I  ++N LGY
Sbjct: 117 QGIGKRIAERLIVELRNK---LQRFTDNDKTIHENKNDIEANQFSKYIDEIYLILNSLGY 173

Query: 173 GQDQ--ATTAVVSVLKKEKNI 191
             ++   +  ++++ +KE ++
Sbjct: 174 VDNEIKESIKIITINEKENSL 194


>gi|55820159|ref|YP_138601.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus LMG
           18311]
 gi|55822047|ref|YP_140488.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus
           CNRZ1066]
 gi|81559960|sp|Q5M1Y4|RUVA_STRT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81561136|sp|Q5M6H5|RUVA_STRT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|55736144|gb|AAV59786.1| Holliday junction DNA helicase, subunit A [Streptococcus
           thermophilus LMG 18311]
 gi|55738032|gb|AAV61673.1| Holliday junction DNA helicase, subunit A [Streptococcus
           thermophilus CNRZ1066]
          Length = 196

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKHIVIETNGLGYIVTVA-NPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSS 137
           A +++ +L GK   L +
Sbjct: 120 AQQMVLDLAGKFAELPA 136


>gi|239618103|ref|YP_002941425.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|259495648|sp|C5CFS3|RUVA_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239506934|gb|ACR80421.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 195

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 14/148 (9%)

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            ++GF    +   F++L     +G ++A+ +LS  +   L + I  ++   ++++PG+  
Sbjct: 59  EIYGFKDRAEYNVFLMLLKANKIGPKMALKILSATSPEMLQKMIASKDISGLSRLPGLGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A R+++EL       +    +++S V++             +A+ AL  LG+    A 
Sbjct: 119 KTAERLVSELYDLVKDYAVEFPKELSDVSE-------------DAVGALTALGFDMTSAK 165

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV  VL KE+ + +  +++R ALR ++
Sbjct: 166 LAVNEVL-KEQTVENTQELVRKALRKLN 192


>gi|159903243|ref|YP_001550587.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9211]
 gi|229560117|sp|A9B9X1|RUVA_PROM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|159888419|gb|ABX08633.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9211]
          Length = 223

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 1   MIGKIKGNI-----EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG +KG        G    +VL    GV Y I    R L  L    +  ++++   +++
Sbjct: 1   MIGWLKGEKIDHWNNGNRAGFVL-SCNGVGYEIQLSRRNLIALNNY-NVLSIWIHQVLKE 58

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQI 113
           D   LFGF+   +R  F  L +V GVG ++AM +L   +  +L+ ++  QN +V  + + 
Sbjct: 59  DGSNLFGFIEKSERDLFRKLITVSGVGPQLAMSLLDDNSYEQLIANV--QNKEVTKLTRS 116

Query: 114 PGISMKIASRIMTELKGK 131
            G+  + A R++ EL+ K
Sbjct: 117 SGVGKRTAERLILELQNK 134


>gi|302338526|ref|YP_003803732.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM
           11293]
 gi|301635711|gb|ADK81138.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM
           11293]
          Length = 202

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 17/164 (10%)

Query: 46  TLFVETHM--RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESII 103
           T+ +  H+  R+D + LF F S  +R  F  L  V G+G + A+ +LS + A   + ++ 
Sbjct: 44  TVQIPVHLIHREDAMLLFAFASKKERNLFRELLKVSGIGPKQAVRILSGMEADRFIAALE 103

Query: 104 LQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
            ++  +++ IPG+  K A +I+  L+GK        +              S+P   +  
Sbjct: 104 NEDVDLLSSIPGVGKKSAGKIILALRGKLTPAEEEGEAGD----------ESLPFKEL-- 151

Query: 164 ISALVNLGYGQ---DQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           + AL  +G+ +   ++A  A ++ L+ E+   D  ++ R   RA
Sbjct: 152 VEALNGMGFDRKLAEKALKAALNELEPERFEHDHEKLERELFRA 195


>gi|213420857|ref|ZP_03353923.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 106

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           +IG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 8   VIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 67

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V
Sbjct: 68  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFV 106


>gi|169836512|ref|ZP_02869700.1| Holliday junction DNA helicase RuvA [candidate division TM7
           single-cell isolate TM7a]
          Length = 76

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 41/67 (61%)

Query: 51  THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110
           T++++D I L+GF +  +R+ F  L S+ GVG ++A+ +LS     E++E +    SK++
Sbjct: 10  TNVKEDDISLYGFKTQNERELFKALISISGVGPKLAIAILSTFNMREIIEIVTEDESKIL 69

Query: 111 AQIPGIS 117
            +  G+ 
Sbjct: 70  QEFQGLE 76


>gi|33865569|ref|NP_897128.1| Holliday junction DNA helicase RuvA [Synechococcus sp. WH 8102]
 gi|44888398|sp|Q7U7F0|RUVA_SYNPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33632738|emb|CAE07550.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           8102]
          Length = 205

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG +KG+++   +    + VLI   GV Y +    R    +         ++   +  D
Sbjct: 1   MIGWLKGDVQHRDQKGSRNLVLIACGGVGYDVQLIERDWQAV-STDQRHEFWIHQVVSAD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            ++LFGFL   +R  F  L  V GVG +  + +L+     ELV +++  + K + +  G+
Sbjct: 60  NLQLFGFLQLAERDLFRELIQVSGVGPQAGLALLNACAYKELVTALVHSDLKTLCRAKGV 119

Query: 117 SMKIASRIMTELKGK 131
             + A R+  EL+ +
Sbjct: 120 GKRTAERLALELRTR 134


>gi|213029463|ref|ZP_03343910.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 96

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L    GVG ++
Sbjct: 2   YEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKL 61

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           A+ +LS ++A + V ++  +    + ++PGI  K
Sbjct: 62  ALAILSGMSAQQFVNAVEREELGALVKLPGIGKK 95


>gi|284931638|gb|ADC31576.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           gallisepticum str. F]
          Length = 226

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 22/163 (13%)

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS-KVIAQIPGIS 117
            L+ F S  +++WF  L ++ G+G + AM V+  +   E V ++I  N    + ++  I+
Sbjct: 62  ELYAFKSLKEKEWFKTLLTINGIGPKTAMNVM--VNKQEEVLTLIKNNDLNGLLRLENIN 119

Query: 118 MKIASRIMTE-------LKGKAISLSSVVQQ--------DMSCVNKEQAHICSMPSFAIN 162
            K+A+ ++         LK + +    V  Q        D   +N ++     +    I 
Sbjct: 120 KKVATMLLASDIASKHYLKNQIVVSDKVEPQIDDDEKIDDSKDLNDDEL----LSEIVIE 175

Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           AI  L++LGY Q+Q  TA+  +  K ++I D + ++ + ++ I
Sbjct: 176 AIDCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218


>gi|31544808|ref|NP_853386.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           gallisepticum str. R(low)]
 gi|81572800|sp|Q7NAN2|RUVA_MYCGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|31541654|gb|AAP56954.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930882|gb|ADC30821.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           gallisepticum str. R(high)]
          Length = 226

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 22/163 (13%)

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS-KVIAQIPGIS 117
            L+ F S  +++WF  L ++ G+G + AM V+  +   E V ++I  N    + ++  I+
Sbjct: 62  ELYAFKSLKEKEWFKALLTINGIGPKTAMNVM--VNKQEEVLTLIKNNDLNGLLRLENIN 119

Query: 118 MKIASRIMTE-------LKGKAISLSSVVQQ--------DMSCVNKEQAHICSMPSFAIN 162
            K+A+ ++         LK + +    V  Q        D   +N ++     +    I 
Sbjct: 120 KKVATMLLASDIASKHYLKNQIVVSDKVEPQIDDDEKIDDSKDLNDDEL----LSEIVIE 175

Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           AI  L++LGY Q+Q  TA+  +  K ++I D + ++ + ++ I
Sbjct: 176 AIDCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218


>gi|312865841|ref|ZP_07726063.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415]
 gi|311098716|gb|EFQ56938.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415]
          Length = 196

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y++++  G+ Y++       S   ++     +++   +R+D   L
Sbjct: 1   MYDYLKGILTKITAKYIVVEAGGLGYMVNVA-NPYSFSDQMNQDIQIYLHYVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  YGFHNEEEKAVFLNLISVSGIGPTTALAIVAVDDNEGLVAAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           A +++ +L GK +    V Q D     + Q+   ++      A+ AL  LGY
Sbjct: 120 AQQMVLDLAGKFV---EVPQADGKTSPQAQSTNQNLNE----AMEALQALGY 164


>gi|224540665|ref|ZP_03681204.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517737|gb|EEF86842.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 115

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 11/119 (9%)

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK----AISLSSVVQQDMS 144
           +LS ++  ELV  I  +N+ ++  + GI +K A R++ +LK K    A S  S +     
Sbjct: 2   ILSALSPAELVNVISTENANLLKTVKGIGLKTAQRVIVDLKDKIKTGAASAGSTIGSLGG 61

Query: 145 CVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            ++   A +         AI+AL  LG+ Q  +   V+++LK+E + A   Q+I+LAL+
Sbjct: 62  MLSAANAQVQE------EAIAALTMLGFAQAPSQKVVLAILKEEPD-APVEQVIKLALK 113


>gi|194246569|ref|YP_002004208.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus
           Phytoplasma mali]
 gi|254767381|sp|B3R0J1|RUVA_PHYMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193806926|emb|CAP18355.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus
           Phytoplasma mali]
          Length = 186

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 29/206 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +    +++V++D   + Y I   I +     +I      FV  H++++   L
Sbjct: 1   MYSYIKGKVVNNGQNFVIVDNNNIGYHI---IVSNPYFYEINKEYKFFVHFHIKENLQIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGISMK 119
           +GF  + +  +F  L  V  +G + A+ +LS     E V   I  N  V + + PGI +K
Sbjct: 58  YGFNDNKNLLFFKKLLDVPTIGPKSAL-MLSETDNLEQVFQAIENNDNVYLRKFPGIGIK 116

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKG  I    ++      +N ++  +  +          L+NLG+       
Sbjct: 117 SAQQIILKLKGDLIFSEKII------LNPKKTELEKI----------LLNLGF----VKK 156

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + SVL    N  DD + + L L+ +
Sbjct: 157 EIKSVL----NQIDDKKELELMLKEV 178


>gi|1941919|emb|CAA63622.1| orf4 [Bacillus subtilis subsp. subtilis str. 168]
          Length = 105

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P      + K     T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTP---NPFIYKERSQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102
           +GF +  ++  F  L +V G+G + A+ +L       ++++I
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAI 99


>gi|161936257|ref|YP_115931.2| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 232]
          Length = 221

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 14/140 (10%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-----TLFVETHMRQDQIRLFGFLSDLDR 69
           +Y++++  G  Y+IY P        +I  F       +++  H        +GF S  +R
Sbjct: 15  NYLILENHGSGYLIYVP--------RIDRFSRDENRKIYIYEHENDYTKITYGFASFRER 66

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ E +
Sbjct: 67  ILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQ 125

Query: 130 GKAISLSSVVQQDMSCVNKE 149
            K    +   +      N E
Sbjct: 126 KKYERFNENHKNQTEETNPE 145


>gi|32473207|ref|NP_866201.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica SH 1]
 gi|81661574|sp|Q7USB0|RUVA_RHOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|32397886|emb|CAD73887.1| probable holliday junction DNA helicase ruvA [Rhodopirellula
           baltica SH 1]
 gi|327540460|gb|EGF27045.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica WH47]
          Length = 207

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTL----FVETHMRQ 55
           MI  I G +  + E  V+I      Y +Y    T   L  +IG+   L    ++E + + 
Sbjct: 1   MIVSIAGKLVQVGEISVIIQAAPFDYEVYVGDYTRRQLQNQIGNEVRLHTLDYIEGNAQG 60

Query: 56  DQI--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
            ++  RL GF +  +RQ+F L  SV GVG + A+  + R    EL   I  Q++K ++ +
Sbjct: 61  GRLTPRLIGFSTLPERQFFDLFCSVDGVGVKKALRAMVR-PVKELAVLIEEQDAKTLSAL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           PGI    + +++ +L+ K    + +V   +++   + ++ I S      +   ALV LG+
Sbjct: 120 PGIGPATSEKVIAKLRRKMPRFALMVAGGEVADAMEVESPIVS------DTYDALVTLGH 173

Query: 173 GQDQATTAVVSVLKKEKNIADDSQII 198
            +  A   +   L   K   D   ++
Sbjct: 174 SESDARKLIDETLATGKKFKDTESLL 199


>gi|153827628|ref|ZP_01980295.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae
           MZO-2]
 gi|149737900|gb|EDM52805.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae
           MZO-2]
          Length = 120

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%)

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMS 144
           + + +LS +TA + V  +  ++   + ++PG+  K A R++ E+K +   L      D+ 
Sbjct: 1   MGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDR---LKGWGAGDLF 57

Query: 145 CVNKEQAHICSMPSFAIN----AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
               + A + S P  A N    A+SAL+ LGY   QA+ AV  V K   +     ++IR 
Sbjct: 58  TPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASKAVSQVAKAGMS---SEELIRE 114

Query: 201 ALRAI 205
           AL+++
Sbjct: 115 ALKSM 119


>gi|33322999|gb|AAQ07236.1|AF496544_1 holliday junction DNA helicase [Lactobacillus delbrueckii subsp.
          lactis]
          Length = 83

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++++ L
Sbjct: 1  MYEYFEGTITVVNPAYVVIEVAGIGYRILTPT---PYAYKNGDKARIYVEQVVRENRMTL 57

Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVA 86
          +GF S  D+  F  L  V G+G + A
Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSA 83


>gi|72080739|ref|YP_287797.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448]
 gi|90135315|sp|Q4A7W5|RUVA_MYCH7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71913863|gb|AAZ53774.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448]
          Length = 221

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-----TLFVETHMRQDQIRLFGFLSDLDR 69
           +Y++++  G  Y+IY P        +I  F       +++  H        +GF S  +R
Sbjct: 15  NYLILENHGSGYLIYVP--------RIDRFSRDENRKIYIYEHENDYTKITYGFASFRER 66

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ E +
Sbjct: 67  ILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQ 125

Query: 130 GK 131
            K
Sbjct: 126 KK 127


>gi|71893769|ref|YP_279215.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J]
 gi|90135325|sp|Q4A9R7|RUVA_MYCHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71851896|gb|AAZ44504.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J]
          Length = 221

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-----TLFVETHMRQDQIRLFGFLSDLDR 69
           +Y++++  G  Y+IY P        +I  F       +++  H        +GF S  +R
Sbjct: 15  NYLILENHGSGYLIYVP--------RIDRFSRDENRKIYIYEHENDYTKITYGFASFRER 66

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ E +
Sbjct: 67  ILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQ 125

Query: 130 GK 131
            K
Sbjct: 126 KK 127


>gi|206895983|ref|YP_002247234.1| holliday junction ATP-dependent DNA helicase RuvA, putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738600|gb|ACI17678.1| holliday junction ATP-dependent DNA helicase RuvA, putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 182

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 31  PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
            I    C  + GD   LF  +    + IR+F F +  +   F +L++V+GVG   A  +L
Sbjct: 25  SIEVTRCTTRAGDGEYLFFVSF--DNDIRVFVFSNKEEFGLFQVLKNVKGVGNIKASRIL 82

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD-MSCVNKE 149
           S     +L+  I   +   +A +PGI  + A RI+ EL G+          D M  VN  
Sbjct: 83  SLYDVQQLLNMIKAGDEHELALLPGIGERTAKRIVAELSGRLTHTRHDFDNDFMEVVNA- 141

Query: 150 QAHICSMPSFAINAISALVN 169
               C +  +  N ++ L+N
Sbjct: 142 ---ACDL-GYERNVVTELLN 157


>gi|312601377|gb|ADQ90632.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           hyopneumoniae 168]
          Length = 221

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-----TLFVETHMRQDQIRLFGFLSDLDR 69
           +Y++++  G  Y+IY P        +I  F       +++  H        +GF S  +R
Sbjct: 15  NYLILENHGSGYLIYVP--------RIDRFNRDENRKIYIYEHENDYTKITYGFASFRER 66

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ E +
Sbjct: 67  ILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQ 125

Query: 130 GK 131
            K
Sbjct: 126 KK 127


>gi|255027975|ref|ZP_05299961.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-003]
          Length = 110

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAI 101


>gi|113474071|ref|YP_720132.1| DNA recombination protein RuvA [Trichodesmium erythraeum IMS101]
 gi|110165119|gb|ABG49659.1| DNA recombination protein, RuvA [Trichodesmium erythraeum IMS101]
          Length = 109

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 1  MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
          MI  +KG +  +Y+       V+++V  V Y +    R    L + G    +F    MR+
Sbjct: 1  MINYLKGKVANVYKGSGFRMTVILEVNQVGYELQVLPRLTQSLQE-GKQVQVFTHQQMRE 59

Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
          DQ+ L+GF +  +R  F  L SV G+GA++A+ +L
Sbjct: 60 DQMVLYGFGTSAERDLFRQLVSVSGIGAQLAIALL 94


>gi|224540664|ref|ZP_03681203.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224517736|gb|EEF86841.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 82

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
          MI  I+G +  L     +ID  G+ Y +   + T + + GK    C L++   +R+D   
Sbjct: 1  MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58

Query: 60 LFGFLSDLDRQWFMLLQSVQGVGA 83
          L+GF    +R+ F+LL SV G+G 
Sbjct: 59 LYGFADKQERELFLLLISVSGIGG 82


>gi|328471586|gb|EGF42464.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus MTCC
           5462]
          Length = 114

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           L SV G+G + A+ +L+ +++  L  +I   + K + + PGI  K A++I+ +LKGK
Sbjct: 3   LLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQIILDLKGK 59


>gi|330723322|gb|AEC45692.1| Holliday junction DNA helicase RuvA [Mycoplasma hyorhinis MCLD]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 7/137 (5%)

Query: 14  EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           ++Y++++   V ++IY P   +    K  +   +++  +  +     +GF +  +R  F 
Sbjct: 14  KNYLILEQNYVGHLIYVP--NIDRFEK-DESKKIYIYKYENEYSKTTYGFENFRERILFE 70

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L SVQG+G + A+ +L++   T +   I   + K I++ P +++K A +I+ E + K I
Sbjct: 71  DLISVQGIGPKTAIAILNQGWETAM-SYIADGDWKKISEFPYLNVKNAKQIVFEFQNKYI 129

Query: 134 SLSSVVQQDMSCVNKEQ 150
               + Q     +NK++
Sbjct: 130 ---KIFQNYQKTLNKDK 143


>gi|304373060|ref|YP_003856269.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           hyorhinis HUB-1]
 gi|304309251|gb|ADM21731.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           hyorhinis HUB-1]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 7/137 (5%)

Query: 14  EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73
           ++Y++++   V ++IY P   +    K  +   +++  +  +     +GF +  +R  F 
Sbjct: 14  KNYLILEQNYVGHLIYVP--NIDRFEK-DESKKIYIYKYENEYSKTTYGFENFRERILFE 70

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L SVQG+G + A+ +L++   T +   I   + K I++ P +++K A +I+ E + K I
Sbjct: 71  DLISVQGIGPKTAIAILNQGWETAM-SYIADGDWKRISEFPYLNVKNAKQIVFEFQNKYI 129

Query: 134 SLSSVVQQDMSCVNKEQ 150
               + Q     +NK++
Sbjct: 130 ---KIFQNYQKTLNKDK 143


>gi|319776838|ref|YP_004136489.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|318037913|gb|ADV34112.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
          Length = 145

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F  L ++ G+G RVA  VL+ +   + +  I   N + IA+I  I+ +
Sbjct: 57  LYGFKELEERKLFADLLNLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 115

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCV 146
           IA  I+ ELK K  S S  V++   C+
Sbjct: 116 IARIIVEELKEKLSSKSKDVKKLKLCL 142


>gi|319776965|ref|YP_004136616.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|319777203|ref|YP_004136854.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|318038040|gb|ADV34239.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
 gi|318038278|gb|ADV34477.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
          Length = 145

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F  L ++ G+G RVA  VL+ +   + +  I   N + IA+I  I+ +
Sbjct: 57  LYGFKELEERKLFADLLNLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 115

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCV 146
           IA  I+ ELK K  S S  V++   C+
Sbjct: 116 IARIIVEELKEKLSSKSKDVKKLKLCL 142


>gi|238809746|dbj|BAH69536.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 154

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F  L ++ G+G RVA  VL+ +   + +  I   N + IA+I  I+ +
Sbjct: 66  LYGFKELEERKLFADLLNLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 124

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCV 146
           IA  I+ ELK K  S S  V++   C+
Sbjct: 125 IARIIVEELKEKLSSKSKDVKKLKLCL 151


>gi|152992646|ref|YP_001358367.1| hypothetical protein SUN_1053 [Sulfurovum sp. NBC37-1]
 gi|151424507|dbj|BAF72010.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 476

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           LL SV+G+G + A  ++ +   TELV ++     K++ +I     K  +R+  E K
Sbjct: 415 LLTSVEGIGKKKAEKIMDKFDTTELVHALETAPEKLVEEISWFKKKFLTRLQKEWK 470


>gi|291320151|ref|YP_003515412.1| Holliday junction DNA helicase RuvA [Mycoplasma agalactiae]
 gi|290752483|emb|CBH40455.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae]
          Length = 198

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 10/118 (8%)

Query: 17  VLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           ++ + QG+ Y  I+  P R      +I   C L++     + Q   + F    +R  F+ 
Sbjct: 17  IIFESQGIGYSLILPDPERV-----EIKQKCKLYLFEIKNEYQYATYAFKDFKERLLFVD 71

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQ-NSKVIAQIPGISMKIASRIMTELKGK 131
           L S+ G+G R A  +L+     E V ++I + N++ + +IP ++ ++A  I+ EL+ K
Sbjct: 72  LISLNGIGPRAAFNILN--FGFEKVAALIAEGNAEALIEIPYLNPRMARLIVAELQAK 127


>gi|15829128|ref|NP_326488.1| Holliday junction DNA helicase motor protein [Mycoplasma pulmonis
           UAB CTIP]
 gi|20455257|sp|Q98PR2|RUVA_MYCPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|14090072|emb|CAC13830.1| HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycoplasma pulmonis]
          Length = 197

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 27/167 (16%)

Query: 47  LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ- 105
           L++     + Q  L+GF    +R  F  L S+ G+G R+A+ +L+     E + S+I   
Sbjct: 44  LYIYELSNEYQKTLYGFTHFKERVLFEDLISINGIGPRIALILLN--DGWEKIASLIANG 101

Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
           N + +++ P I++K   +I+ EL+ K    +  +++D             +PS  I  IS
Sbjct: 102 NWETLSRYPYINVKNCHQIIFELQNK---WAKFLEKDE-----------KVPSANIQNIS 147

Query: 166 ----ALVNLGYGQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAISC 207
                L  LG+ ++Q   A+ S      N+ DD + ++  A++ IS 
Sbjct: 148 DATETLKMLGFKREQIKYALESA-----NLQDDVETLVENAIKKIST 189


>gi|308190042|ref|YP_003922973.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER]
 gi|307624784|gb|ADN69089.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER]
          Length = 195

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ FM L ++ G+G RVA  VL+ +   + +  I   N + IA+I  I+ +
Sbjct: 57  LYGFKELEERKLFMDLINLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 115

Query: 120 IASRIMTELKGKAISLSSV--VQQDMSCVN--KEQAHICSMPSFAINAI-SALVNLGYGQ 174
           +A  I+ EL+ K   +++    Q+ +   N   E   I  M  F    I SAL  +   Q
Sbjct: 116 LARIIVEELQDKWAKITNTQDAQKQVKNSNLLSEAKEILKMLGFKAAQIDSALTKVELNQ 175

Query: 175 D 175
           D
Sbjct: 176 D 176


>gi|207110462|ref|ZP_03244624.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 102

 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           G R+A+ +LS  +  E    I  +  K + Q+PGI  K+A +IM +L G
Sbjct: 1   GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 49


>gi|308189841|ref|YP_003922772.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER]
 gi|307624583|gb|ADN68888.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER]
          Length = 145

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F  L ++ G+G RVA  VL+ +   + +  I   N + IA+I  I+ +
Sbjct: 57  LYGFKELEERKLFADLVNLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 115

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCV 146
           +A  I+ ELK K  S S  V++   C+
Sbjct: 116 LARIIVEELKEKLSSKSKDVKKLKLCL 142


>gi|251771977|gb|EES52549.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum
           ferrodiazotrophum]
          Length = 211

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTL--FVETHMRQDQI 58
           MI ++ G IE    D+V++    V Y +      +S L       +L  F+     Q+  
Sbjct: 1   MIARLFGTIEETGSDWVILRAGAVGYRVLLSPYAMSQLSAREKEISLRTFLLWGEHQETP 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L GFL   + + F  ++ + G+G   A+ ++S +      E+I   +   + ++ G+  
Sbjct: 61  LLVGFLDAAEEELFHEIRRIGGLGPTKAIRMIS-LPPGSFWEAIASGDVGRLRKLKGVGE 119

Query: 119 KIASRIMTELKGKAISLSSVVQQD-MSCVNKEQAHICSMPSFAINAISALV--NLGYGQD 175
             A ++++EL+ +  SL S    D +S            P  A+ A+  ++    G+   
Sbjct: 120 TTAKKLVSELRDRVPSLISASPADSLSSGGSPLPEGPLSPRGAVAAVREVLVAQFGHSPS 179

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203
           +A   +   L +  +   + ++     R
Sbjct: 180 EADAMIRRALSRNPSARTEEELFHEVYR 207


>gi|113474072|ref|YP_720133.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum
           IMS101]
 gi|110165120|gb|ABG49660.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum
           IMS101]
          Length = 119

 Score = 38.9 bits (89), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
           +LS     +LV++I+  N++V+A+ PG+  K A RI  ELK K        +QD      
Sbjct: 1   MLSLTELPDLVQAIVGGNTRVLAKTPGVGAKTAERITLELKNKLAEW----RQDAGLTTS 56

Query: 149 EQAHICSMPSFAINAISALVNLGY-GQD--QATTAVVSVLKKEKNI-ADDSQIIRLALRA 204
               +  MP+        L+ LGY GQ+  Q+  AV       KN  A+D   IR A+  
Sbjct: 57  --VPVGVMPAIQEEVEMTLLALGYTGQEVIQSLQAVSKDANMSKNTNAED--WIREAISW 112

Query: 205 IS 206
           +S
Sbjct: 113 LS 114


>gi|148377489|ref|YP_001256365.1| Holliday junction DNA helicase motor protein [Mycoplasma agalactiae
           PG2]
 gi|229560106|sp|A5IY12|RUVA_MYCAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148291535|emb|CAL58921.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae PG2]
          Length = 198

 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 10/118 (8%)

Query: 17  VLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           ++ + QG+ Y  I+  P R      +I   C L++     + Q   + F    +R  F+ 
Sbjct: 17  IIFESQGIGYSLILPDPERV-----EIKQKCKLYLFEIKNEYQYATYAFKDFKERLLFVD 71

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQ-NSKVIAQIPGISMKIASRIMTELKGK 131
           L S+ G+G R A  +L+     E V ++I + N++ + +IP ++ ++A  I+ EL+ K
Sbjct: 72  LISLNGIGPRAAFNILN--FGFEKVVALIAEGNAEALIEIPYLNPRMARLIVAELQAK 127


>gi|319775000|ref|YP_004137488.1| UvrABC system protein C [Haemophilus influenzae F3047]
 gi|329123098|ref|ZP_08251668.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116]
 gi|317449591|emb|CBY85796.1| UvrABC system protein C [Haemophilus influenzae F3047]
 gi|327471653|gb|EGF17095.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116]
          Length = 609

 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS+K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAERIFETLKN 608


>gi|294155532|ref|YP_003559916.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145]
 gi|291599949|gb|ADE19445.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145]
          Length = 201

 Score = 38.1 bits (87), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 22/131 (16%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSR--ITATELVESIILQNSKVIAQIPGIS 117
           ++GF   ++R  F+ L +V G+GA++AM +L     T  +LV S    N + ++++  ++
Sbjct: 59  IYGFKDYMERILFLDLINVNGIGAKIAMNILDNGWETVADLVAS---ANYETLSKLNFVN 115

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS----ALVNLGYG 173
            K A  I+  L+ K   + +V   + +  N             INA+S    +L  LG+ 
Sbjct: 116 EKNARNIILSLQDKWKKIRNVSNSNETAKN-------------INALSDVSESLKMLGFK 162

Query: 174 QDQATTAVVSV 184
           + Q + A+  +
Sbjct: 163 EKQISYALSKI 173


>gi|26553733|ref|NP_757667.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2]
 gi|38258589|sp|Q8EWC5|RUVA_MYCPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|26453740|dbj|BAC44071.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2]
          Length = 219

 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 85/173 (49%), Gaps = 17/173 (9%)

Query: 45  CTLFVETHMRQDQ-----IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
             +FV T + Q+         +GF +  ++ +F  L +V G+G + ++ +L R     L 
Sbjct: 42  AKIFVYTKIFQNNKNNFLFEYYGFKTLREKIFFENLLTVNGIGPKTSLTIL-RNDLNLLK 100

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMT----ELKGKAISLSSVVQQDMSCVNKEQAHICS 155
           E I  ++ + ++ + G + K A  I++    +LK + IS  +    + S +N++      
Sbjct: 101 ELIRNEDIESLSVLEGFTNKTALSIVSALSYKLKNERISEYNN-DVNHSSINQQSNSYNP 159

Query: 156 MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206
           +P      +SAL  LGY ++    A+  ++ +  N+++D  S +I  A++ IS
Sbjct: 160 VPDL----VSALKALGYKKNMIEKAINLLIPQLSNVSEDQISDLISQAIKIIS 208


>gi|254458423|ref|ZP_05071848.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
 gi|207084731|gb|EDZ62018.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
          Length = 475

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L SV GVGA+    ++      + V  ++ QN+ ++ ++ GI+ K+AS+I    K
Sbjct: 416 FLTSVDGVGAKKVEKIVKHFGNVDEVVGVLHQNTSILTEVKGITKKLASKIEKAWK 471


>gi|313665319|ref|YP_004047190.1| Holliday junction DNA helicase RuvA [Mycoplasma leachii PG50]
 gi|312949212|gb|ADR23808.1| putative Holliday junction DNA helicase RuvA [Mycoplasma leachii
           PG50]
          Length = 186

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 40  KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           K+ +   +++ T++  +  + +GF + L R  F +L ++  +G + A  +L   +  EL+
Sbjct: 39  KLSENNKIYIATNVIDNLFKCYGFYNQLVRDLFEILININTIGEKTAFLILENYSYEELI 98

Query: 100 ESIILQNSKV--IAQIPGISMKIASRIMT 126
           +  I +N+K   I Q+ GI    A  I+ 
Sbjct: 99  D--IFKNAKTDKILQLKGIGSYTARLIIN 125


>gi|308189833|ref|YP_003922764.1| Holliday junction DNA helicase [Mycoplasma fermentans JER]
 gi|319777048|ref|YP_004136699.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|238809832|dbj|BAH69622.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624575|gb|ADN68880.1| Holliday junction DNA helicase [Mycoplasma fermentans JER]
 gi|318038123|gb|ADV34322.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
          Length = 200

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESII-LQNSKVIAQIPGISM 118
           L+GF    +R  FM L ++ G+G RVA  +L++    E V S+I L     + +IP I+ 
Sbjct: 57  LYGFKDFKERLLFMDLINLNGIGPRVAFNILNQ--GWEKVASLIALGKVDHLIEIPYINP 114

Query: 119 KIASRIMTELKGKAISLSSV--VQQDMSCVN--KEQAHICSMPSFAINAI-SALVNLGYG 173
           +IA  ++ EL+ K   +++    Q+ +   N   E      M  F    I SAL  +   
Sbjct: 115 RIARIVVGELQDKWAKITNTQDAQKQVKNSNLLSEAKETLKMLGFKAAQIDSALTKVELN 174

Query: 174 QD 175
           QD
Sbjct: 175 QD 176


>gi|193216717|ref|YP_001999959.1| Holliday junction DNA helicase RuvA [Mycoplasma arthritidis
           158L3-1]
 gi|254767376|sp|B3PMK3|RUVA_MYCA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193002040|gb|ACF07255.1| Holliday junction DNA helicase motor protein [Mycoplasma
           arthritidis 158L3-1]
          Length = 203

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 14/178 (7%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I  +  +Y+++D  G   +IY P   +S   K  +   +F+     +     +GF + 
Sbjct: 7   GKIMHVNTNYLILDHNGEGDLIYAP--NISRFKK-DELRKIFISQIENEYTKVTYGFDNF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +   F  L  +QG+G + A+ +L+ I    ++  +   N   + +IP +S KIA+ I+ 
Sbjct: 64  KELVIFEDLIEIQGLGPKTAISILN-IGWENVINYVATANKGALGKIPYVSSKIANAIIF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA---ISALVNLGYGQDQATTAV 181
             + K           M  +  ++A    +P+ + N    +  +  LG+ Q Q   A+
Sbjct: 123 SYQDKYAKF-------MKKLTSDEAAKIKVPASSENENKFLDTMKMLGFKQQQIKFAL 173


>gi|270684462|ref|ZP_06222837.1| UvrABC system, protein C [Haemophilus influenzae HK1212]
 gi|270316201|gb|EFA28168.1| UvrABC system, protein C [Haemophilus influenzae HK1212]
          Length = 118

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVGA+    +L  +   + V+   L     IA +PGIS+K+A RI   LK
Sbjct: 65  LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAERIFETLK 116


>gi|145635242|ref|ZP_01790946.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA]
 gi|145267521|gb|EDK07521.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA]
          Length = 609

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608


>gi|229846976|ref|ZP_04467082.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1]
 gi|229810060|gb|EEP45780.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1]
          Length = 609

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608


>gi|16272031|ref|NP_438230.1| excinuclease ABC subunit C [Haemophilus influenzae Rd KW20]
 gi|260580639|ref|ZP_05848466.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW]
 gi|1174920|sp|P44489|UVRC_HAEIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|1573005|gb|AAC21735.1| excinuclease ABC, subunit C (uvrC) [Haemophilus influenzae Rd KW20]
 gi|260092701|gb|EEW76637.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW]
          Length = 609

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608


>gi|145636737|ref|ZP_01792403.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH]
 gi|145270035|gb|EDK09972.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH]
          Length = 609

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608


>gi|313678674|ref|YP_004056414.1| Holliday junction DNA helicase [Mycoplasma bovis PG45]
 gi|312950114|gb|ADR24709.1| Holliday junction DNA helicase [Mycoplasma bovis PG45]
          Length = 198

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 25/205 (12%)

Query: 7   GNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           G I   +   ++ + QG+ Y  I+  P R       +   C L++     + Q   + F 
Sbjct: 7   GEIIHKHNSNIIFESQGIGYSLILPDPERV-----DVKQKCKLYLFEIKNEYQYATYAFK 61

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ-NSKVIAQIPGISMKIASR 123
              +R  F+ L S+ G+G + A  +L+     E V ++I + N + + +IP ++ ++A  
Sbjct: 62  DFKERLLFVDLISLNGIGPKAAFNILN--FGFEKVSALIAEGNVEALIKIPYLNPRMARL 119

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183
           I+ EL+ K   + S          KE A I    +    A   L  LG+   Q   A+  
Sbjct: 120 IVAELQAKWSKMISP---------KEVAKISVSTNTISEAKETLKMLGFKTKQIDNALAK 170

Query: 184 VLKKEKNIADD-SQIIRLALRAISC 207
           V     +  DD  ++I  A++ IS 
Sbjct: 171 V-----STTDDIEKMIEEAIKLIST 190


>gi|260582025|ref|ZP_05849820.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127]
 gi|260094915|gb|EEW78808.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127]
          Length = 609

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608


>gi|229845394|ref|ZP_04465525.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1]
 gi|229811702|gb|EEP47400.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1]
          Length = 609

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608


>gi|309972809|gb|ADO96010.1| Excinuclease ABC subunit C [Haemophilus influenzae R2846]
          Length = 609

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608


>gi|319896470|ref|YP_004134663.1| uvrabc system protein c [Haemophilus influenzae F3031]
 gi|317431972|emb|CBY80320.1| UvrABC system protein C [Haemophilus influenzae F3031]
          Length = 609

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608


>gi|145629081|ref|ZP_01784880.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21]
 gi|144978584|gb|EDJ88307.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21]
          Length = 553

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS K+A RI   LK 
Sbjct: 500 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 552


>gi|325973630|ref|YP_004250694.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis
           str. Illinois]
 gi|325990082|ref|YP_004249781.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis
           KI3806]
 gi|323575167|emb|CBZ40829.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis]
 gi|323652232|gb|ADX98314.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis
           str. Illinois]
          Length = 206

 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 26/158 (16%)

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGIS 117
           +LFGFLS+ + + F  L +++G+G + A  +L+      ++  +  +  ++ +A++ G +
Sbjct: 60  QLFGFLSEKEFELFNSLLAIKGIGCKTAQAILT--NDWNMMYFLAEREERLKLAELRGFN 117

Query: 118 MKIASRIMTELKGKAISLSSVVQQDM--------SCVNKEQAHICSMPSFAINAISALVN 169
           +KIA+  +  +K    SL +   +           C  KE              IS+L+ 
Sbjct: 118 LKIANLFIYSIKNMK-SLKNSFNKHSSSSYSDSKECKEKE-------------VISSLIK 163

Query: 170 LGYGQDQATTAVVSVLKKEKNIADD-SQIIRLALRAIS 206
           +GY  D    A+  + + +  + +D + +I   L+ IS
Sbjct: 164 IGYKFDDIKRALDIIRESDTELKNDFNSLINECLKTIS 201


>gi|47458434|gb|AAT27756.1| holliday junction DNA helicase RuvA [Mycoplasma mobile 163K]
          Length = 204

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRLFGFLS 65
           G I    ++Y L++     ++IY     L    K  D  T +F+  H       L+GF +
Sbjct: 10  GKIVSFGKNYFLLESNYEGFLIYAA--ELEKFEK--DVVTKVFIYKHENAYSKTLYGFKT 65

Query: 66  DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +R  F+ L S+ G+G + A+  L      E++  I   + + ++++P + +K A +I 
Sbjct: 66  FKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLKSAKQIC 124

Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
            E + K  +L   ++++ S   K ++    +   +    + L  LG+  +Q   A+ ++
Sbjct: 125 FEFQSKYANL---LEKENSGNLKFESKTKKITELS----NTLKTLGFKTNQINYAISNI 176


>gi|161621805|ref|YP_015967.2| Holliday junction DNA helicase motor protein [Mycoplasma mobile
           163K]
          Length = 201

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRLFGFLS 65
           G I    ++Y L++     ++IY     L    K  D  T +F+  H       L+GF +
Sbjct: 7   GKIVSFGKNYFLLESNYEGFLIYAA--ELEKFEK--DVVTKVFIYKHENAYSKTLYGFKT 62

Query: 66  DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +R  F+ L S+ G+G + A+  L      E++  I   + + ++++P + +K A +I 
Sbjct: 63  FKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLKSAKQIC 121

Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
            E + K  +L   ++++ S   K ++    +   +    + L  LG+  +Q   A+ ++
Sbjct: 122 FEFQSKYANL---LEKENSGNLKFESKTKKITELS----NTLKTLGFKTNQINYAISNI 173


>gi|312880085|ref|ZP_07739885.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260]
 gi|310783376|gb|EFQ23774.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260]
          Length = 488

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 55  QDQIRLFGFLSDLDRQWFML----LQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110
           +D+   F   S   R+  +L    L+S+ G+G   A  +LSR  +T+ +  +  ++   +
Sbjct: 409 RDEAHRFAVTSHRSRRDRLLRASRLESIPGIGKGKAAQLLSRFGSTKAIARMAPED---L 465

Query: 111 AQIPGISMKIASRIMTELK 129
           A+ PGI   +A RI+T LK
Sbjct: 466 ARTPGIGTVLAQRILTALK 484


>gi|218440087|ref|YP_002378416.1| alpha amylase catalytic region [Cyanothece sp. PCC 7424]
 gi|218172815|gb|ACK71548.1| alpha amylase catalytic region [Cyanothece sp. PCC 7424]
          Length = 622

 Score = 35.8 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 3   GKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTL---FVETHMRQDQIR 59
           G+I G  +G Y  Y +  +    +I+YCP   L+ L    D   L    ++    +++ +
Sbjct: 108 GEIPGQPQGTYIHYAISAITPTNHILYCPYIDLNGLSHFEDLENLDLKLIKKFNSENKPQ 167

Query: 60  LFGFLSDLDR--QWF 72
           ++GF  D DR  QW 
Sbjct: 168 IYGFSVDQDRIPQWL 182


>gi|1361545|pir||F64239 Holliday junction DNA helicase ruvA homolog - Mycoplasma genitalium
          Length = 260

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F +  +++WF  L  + G+G++ A+ +L+     E+ + I+  N   +  I G++ KI
Sbjct: 119 FAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVNNKI 177

Query: 121 ASRIMT 126
           A  +++
Sbjct: 178 ARALLS 183


>gi|108885107|ref|NP_073029.2| Holliday junction DNA helicase RuvA [Mycoplasma genitalium G37]
 gi|2498869|sp|Q49424|RUVA_MYCGE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84626136|gb|AAC71583.2| Holliday junction DNA helicase [Mycoplasma genitalium G37]
 gi|166078725|gb|ABY79343.1| Holliday junction DNA helicase [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 205

 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F +  +++WF  L  + G+G++ A+ +L+     E+ + I+  N   +  I G++ KI
Sbjct: 64  FAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVNNKI 122

Query: 121 ASRIMT 126
           A  +++
Sbjct: 123 ARALLS 128


>gi|301168650|emb|CBW28241.1| excinuclease UvrABC, endonuclease subunit [Haemophilus influenzae
           10810]
          Length = 609

 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS+K+A  I   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608


>gi|148825664|ref|YP_001290417.1| excinuclease ABC subunit C [Haemophilus influenzae PittEE]
 gi|189038059|sp|A5UB83|UVRC_HAEIE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|148715824|gb|ABQ98034.1| excinuclease ABC subunit C [Haemophilus influenzae PittEE]
          Length = 609

 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS+K+A  I   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608


>gi|68248608|ref|YP_247720.1| excinuclease ABC subunit C [Haemophilus influenzae 86-028NP]
 gi|81336965|sp|Q4QPI7|UVRC_HAEI8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|68056807|gb|AAX87060.1| UvrABC system protein C [Haemophilus influenzae 86-028NP]
          Length = 609

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS+K+A  I   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608


>gi|145639654|ref|ZP_01795257.1| excinuclease ABC subunit C [Haemophilus influenzae PittII]
 gi|145271211|gb|EDK11125.1| excinuclease ABC subunit C [Haemophilus influenzae PittII]
 gi|309750624|gb|ADO80608.1| Excinuclease ABC subunit C [Haemophilus influenzae R2866]
          Length = 609

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS+K+A  I   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608


>gi|145630645|ref|ZP_01786424.1| excinuclease ABC subunit C [Haemophilus influenzae R3021]
 gi|144983771|gb|EDJ91221.1| excinuclease ABC subunit C [Haemophilus influenzae R3021]
          Length = 609

 Score = 35.0 bits (79), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +   + V+   L     IA +PGIS+K+A  I   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608


Searching..................................................done


Results from round 2




>gi|289674670|ref|ZP_06495560.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           syringae FF5]
 gi|302187157|ref|ZP_07263830.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           syringae 642]
 gi|330950609|gb|EGH50869.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae Cit 7]
          Length = 202

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|331016439|gb|EGH96495.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 202

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H+  + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHVDPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|66044657|ref|YP_234498.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           syringae B728a]
 gi|75502953|sp|Q4ZWL2|RUVA_PSEU2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|63255364|gb|AAY36460.1| DNA recombination protein, RuvA [Pseudomonas syringae pv. syringae
           B728a]
 gi|330968891|gb|EGH68957.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 202

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  + +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEA-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|28871123|ref|NP_793742.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969185|ref|ZP_03397324.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato T1]
 gi|301384820|ref|ZP_07233238.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063526|ref|ZP_07255067.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato K40]
 gi|302130610|ref|ZP_07256600.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999572|sp|Q87Y34|RUVA_PSESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28854373|gb|AAO57437.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926183|gb|EEB59739.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato T1]
          Length = 202

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H   + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHADPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040230|gb|ACT57026.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score =  269 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL
Sbjct: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI
Sbjct: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA
Sbjct: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           VVSVLKKEKNIADDSQIIRLALRAISC
Sbjct: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207


>gi|257487010|ref|ZP_05641051.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009348|gb|EGH89404.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 202

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+       S+ S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAESVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|330872653|gb|EGH06802.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 202

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H   + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V +K+ + AD   +IR AL+ +
Sbjct: 180 VSAVKEKDLSSAD---LIRRALKGM 201


>gi|71734074|ref|YP_275913.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|90135568|sp|Q48FC4|RUVA_PSE14 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71554627|gb|AAZ33838.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323052|gb|EFW79141.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329676|gb|EFW85665.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877979|gb|EGH12128.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330892240|gb|EGH24901.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330988969|gb|EGH87072.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 202

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|289626496|ref|ZP_06459450.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650942|ref|ZP_06482285.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868612|gb|EGH03321.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 202

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAETDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|330959265|gb|EGH59525.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 202

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGFLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+     +  + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFALVSSGPNQLEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|298488209|ref|ZP_07006245.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157267|gb|EFH98351.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 202

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|330964824|gb|EGH65084.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 202

 Score =  268 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H   + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|237800218|ref|ZP_04588679.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023075|gb|EGI03132.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 202

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G+I      ++++DV GV Y +  P+ TL  L  +G+  TL+    +R+D   L
Sbjct: 1   MIGRLRGSIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLYTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  + +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEA-LPGTFALVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|170723160|ref|YP_001750848.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619]
 gi|229560119|sp|B1JD71|RUVA_PSEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169761163|gb|ACA74479.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619]
          Length = 205

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S + A ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFHEKRERELFRELIRLNGVGPKLALALMSGLEADELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +      + V+     +    +   +A+SALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPVPVSGASTAEADAVSALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  K+K      ++IR +L+ +
Sbjct: 180 VSAI--KDKAGLSSEELIRRSLKGM 202


>gi|26987951|ref|NP_743376.1| Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440]
 gi|148546488|ref|YP_001266590.1| Holliday junction DNA helicase RuvA [Pseudomonas putida F1]
 gi|37999646|sp|Q88NJ1|RUVA_PSEPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230586|sp|A5VZU6|RUVA_PSEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24982663|gb|AAN66840.1|AE016312_11 Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440]
 gi|148510546|gb|ABQ77406.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas putida F1]
 gi|313497567|gb|ADR58933.1| RuvA [Pseudomonas putida BIRD-1]
          Length = 205

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +      + V+     + S  S   +A+SALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  K+K      ++IR +L+ +
Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202


>gi|296390675|ref|ZP_06880150.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAb1]
          Length = 201

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 112/205 (54%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL+ LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWQNMP--TIAPLVMEPRGSATVSSAEADAVSALIALGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V  ++       ++IR AL+ +
Sbjct: 179 VAAVPGED---LSSEEMIRQALKGM 200


>gi|70732089|ref|YP_261845.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5]
 gi|90135592|sp|Q4K7D8|RUVA_PSEF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68346388|gb|AAY93994.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5]
          Length = 202

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYEVEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R +F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFASKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQAQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +V     + V  +      + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEAVPSM-FALVPNQPDAPAPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  K         +IR AL+ +
Sbjct: 180 VSAIKDK---GLSSEDMIRRALKGM 201


>gi|15596163|ref|NP_249657.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
 gi|107100423|ref|ZP_01364341.1| hypothetical protein PaerPA_01001448 [Pseudomonas aeruginosa PACS2]
 gi|116048891|ref|YP_792308.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152985106|ref|YP_001349891.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7]
 gi|218893063|ref|YP_002441932.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58]
 gi|254239314|ref|ZP_04932637.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719]
 gi|254245249|ref|ZP_04938571.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192]
 gi|313105853|ref|ZP_07792116.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016]
 gi|2498872|sp|Q51425|RUVA_PSEAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122257998|sp|Q02IC8|RUVA_PSEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230585|sp|A6VA06|RUVA_PSEA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725446|sp|B7UXW6|RUVA_PSEA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|9946873|gb|AAG04355.1|AE004530_8 Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
 gi|1183841|dbj|BAA11818.1| Holliday junction binding protein [Pseudomonas aeruginosa]
 gi|115584112|gb|ABJ10127.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171245|gb|EAZ56756.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719]
 gi|126198627|gb|EAZ62690.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192]
 gi|150960264|gb|ABR82289.1| holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7]
 gi|218773291|emb|CAW29103.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58]
 gi|310878618|gb|EFQ37212.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016]
          Length = 201

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 112/205 (54%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL+ LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWENMP--TIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V  ++       ++IR AL+ +
Sbjct: 179 VAAVPGED---LSSEEMIRQALKGM 200


>gi|167035195|ref|YP_001670426.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1]
 gi|189045762|sp|B0KTJ3|RUVA_PSEPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166861683|gb|ABZ00091.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1]
          Length = 205

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEAVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +      + V+     + S  S   +A+SALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  K+K      ++IR +L+ +
Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202


>gi|104783073|ref|YP_609571.1| Holliday junction DNA helicase RuvA [Pseudomonas entomophila L48]
 gi|123079106|sp|Q1I6E8|RUVA_PSEE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|95112060|emb|CAK16787.1| holliday junction helicase subunit A [Pseudomonas entomophila L48]
          Length = 205

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEPVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++ V+ ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASVLVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +      + V+     + S  S   +A+SALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  K+K      ++IR +L+ +
Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202


>gi|49082750|gb|AAT50775.1| PA0966 [synthetic construct]
          Length = 202

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 112/205 (54%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALTLMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL+ LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWENMP--TIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V  ++       ++IR AL+ +
Sbjct: 179 VAAVPGED---LSSEEMIRQALKGM 200


>gi|89094837|ref|ZP_01167770.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92]
 gi|89080892|gb|EAR60131.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92]
          Length = 210

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +       ++IDVQGV Y +   + T   L ++G   TLF    +R+D   L
Sbjct: 1   MIGRLKGELIEKQPPQLVIDVQGVGYEVEASMNTFYRLPELGSTLTLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS I+ +E V  +   ++  + ++PG+  K 
Sbjct: 61  YGFYDKEERSLFRTLIKANGVGPKLAITILSGISTSEFVRCVNDGDTASLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD---MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+K K  +L      D    +    + A           A SALV LGY   QA
Sbjct: 121 AERLIVEMKDKIKALGLETSGDFELSAADGPDMASFEPQADNRAEAESALVALGYKPVQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           T A+  V K   + A   ++IR ALR++
Sbjct: 181 TKAIEQVFKTLGSSASSEELIRHALRSM 208


>gi|262394694|ref|YP_003286548.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25]
 gi|262338288|gb|ACY52083.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25]
          Length = 203

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TAT+ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +                 +  +    AISAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEEEAISALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K + +     Q+IR AL+++
Sbjct: 181 VSQIAKPDMS---SEQMIREALKSM 202


>gi|317491787|ref|ZP_07950222.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920221|gb|EFV41545.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 204

 Score =  264 bits (677), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPEVLLEANGVGYEVHMPMTCFYELPELGQEVIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEREEVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + S +    A    S       A+SAL+ LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLTGDLFNNHSDLPVPAAKKPASEIDAEGEAVSALIALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  + K +   AD   +IR ALRA
Sbjct: 181 MISKIAKPD---ADSETLIRDALRA 202


>gi|320539865|ref|ZP_08039524.1| component of RuvABC resolvasome, regulatory subunit [Serratia
           symbiotica str. Tucson]
 gi|320030051|gb|EFW12071.1| component of RuvABC resolvasome, regulatory subunit [Serratia
           symbiotica str. Tucson]
          Length = 204

 Score =  264 bits (677), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VL++  GV Y +Y P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLLEANGVGYEVYMPMTCFYQLPELGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEHEEITTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + S  +     +  +       A+SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFTNSSGSSLPATAVQTADNDTEAEAVSALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K   + AD   +IR ALRA
Sbjct: 181 MVSKIAK---SGADCETLIRDALRA 202


>gi|330975328|gb|EGH75394.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 202

 Score =  264 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LG    +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGNKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|163802051|ref|ZP_02195947.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4]
 gi|159174192|gb|EDP59000.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4]
          Length = 204

 Score =  264 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +    S   +    +      +   +  +    AISAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K +       Q+IR AL+++
Sbjct: 181 VVSQIAKPDM---TSEQLIREALKSM 203


>gi|229592301|ref|YP_002874420.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens SBW25]
 gi|312962759|ref|ZP_07777247.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|259495652|sp|C3JYS8|RUVA_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229364167|emb|CAY51821.1| holliday junction helicase subunit B [Pseudomonas fluorescens
           SBW25]
 gi|311282976|gb|EFQ61569.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 203

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPITLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR +F  L  + GVG ++A+ ++S +   ELV ++  Q++  + ++PG+  K 
Sbjct: 61  YGFIGKRDRDFFRELIRLNGVGPKLALALMSSLEVDELVRAVSAQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +   V        N+       + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEVVPSMFALVPNQPDMPAGQVASAESDAVSALISLGYKPQEASKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  K         +IR AL+ +
Sbjct: 181 VSAIKDKN---LSSEDMIRRALKGM 202


>gi|91227614|ref|ZP_01261918.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           12G01]
 gi|91188507|gb|EAS74800.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           12G01]
          Length = 203

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TAT+ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +                 +  +    AISAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEEEAISALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K + +     Q+IR AL+++
Sbjct: 181 VSQIAKPDMS---SEQMIREALKSM 202


>gi|300951483|ref|ZP_07165318.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1]
 gi|300956626|ref|ZP_07168905.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1]
 gi|300316608|gb|EFJ66392.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1]
 gi|300449233|gb|EFK12853.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1]
          Length = 203

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPTADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|146283144|ref|YP_001173297.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501]
 gi|166230587|sp|A4VNA4|RUVA_PSEU5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145571349|gb|ABP80455.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501]
 gi|327481497|gb|AEA84807.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri DSM 4166]
          Length = 201

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 114/205 (55%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHMILDVNGIGYEVEVPMTTLYRLPAVGEPVTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++ V+ +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSVLVRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S+    ++ +  E     ++ S   +A+SAL++LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWESMPA--IATLVVEPGSKTAVTSAENDAVSALISLGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ ++        ++IR AL+ +
Sbjct: 179 VSAIQEEN---LSSEEMIRRALKGM 200


>gi|157161330|ref|YP_001458648.1| Holliday junction DNA helicase RuvA [Escherichia coli HS]
 gi|170019794|ref|YP_001724748.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739]
 gi|188494515|ref|ZP_03001785.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638]
 gi|193069860|ref|ZP_03050809.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019]
 gi|167012659|sp|A8A161|RUVA_ECOHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045753|sp|B1J0M7|RUVA_ECOLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157067010|gb|ABV06265.1| Holliday junction DNA helicase RuvA [Escherichia coli HS]
 gi|169754722|gb|ACA77421.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739]
 gi|188489714|gb|EDU64817.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638]
 gi|192956760|gb|EDV87214.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019]
 gi|309702085|emb|CBJ01399.1| holliday junction ATP-dependent DNA helicase [Escherichia coli ETEC
           H10407]
 gi|323937119|gb|EGB33399.1| Holliday junction DNA helicase RuvA [Escherichia coli E1520]
          Length = 203

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATNDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|157145359|ref|YP_001452679.1| Holliday junction DNA helicase RuvA [Citrobacter koseri ATCC
           BAA-895]
 gi|166230539|sp|A8AFI0|RUVA_CITK8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157082564|gb|ABV12242.1| hypothetical protein CKO_01099 [Citrobacter koseri ATCC BAA-895]
          Length = 203

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L + G   T+F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPESGKEATVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|191168085|ref|ZP_03029884.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A]
 gi|256017935|ref|ZP_05431800.1| Holliday junction DNA helicase RuvA [Shigella sp. D9]
 gi|260855801|ref|YP_003229692.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O26:H11 str. 11368]
 gi|260868396|ref|YP_003234798.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O111:H- str. 11128]
 gi|300816247|ref|ZP_07096469.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1]
 gi|300924950|ref|ZP_07140877.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1]
 gi|301327650|ref|ZP_07220858.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1]
 gi|307314227|ref|ZP_07593837.1| Holliday junction DNA helicase RuvA [Escherichia coli W]
 gi|309794242|ref|ZP_07688666.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7]
 gi|332278969|ref|ZP_08391382.1| holliday junction helicase subunit B [Shigella sp. D9]
 gi|190901883|gb|EDV61633.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A]
 gi|257754450|dbj|BAI25952.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O26:H11 str. 11368]
 gi|257764752|dbj|BAI36247.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O111:H- str. 11128]
 gi|300418886|gb|EFK02197.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1]
 gi|300530937|gb|EFK51999.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1]
 gi|300845798|gb|EFK73558.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1]
 gi|306906196|gb|EFN36714.1| Holliday junction DNA helicase RuvA [Escherichia coli W]
 gi|308122147|gb|EFO59409.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7]
 gi|315061167|gb|ADT75494.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli W]
 gi|320198055|gb|EFW72663.1| Holliday junction DNA helicase RuvA [Escherichia coli EC4100B]
 gi|323152650|gb|EFZ38926.1| holliday junction DNA helicase RuvA [Escherichia coli EPECa14]
 gi|323180658|gb|EFZ66203.1| holliday junction DNA helicase RuvA [Escherichia coli 1180]
 gi|323378256|gb|ADX50524.1| Holliday junction DNA helicase RuvA [Escherichia coli KO11]
 gi|324113597|gb|EGC07572.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii B253]
 gi|324118921|gb|EGC12810.1| Holliday junction DNA helicase RuvA [Escherichia coli E1167]
 gi|332101321|gb|EGJ04667.1| holliday junction helicase subunit B [Shigella sp. D9]
          Length = 203

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|269967685|ref|ZP_06181735.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           40B]
 gi|269827772|gb|EEZ82056.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           40B]
          Length = 234

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 33  IGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 92

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TAT+ V  +  ++   + ++PG+  K A
Sbjct: 93  GFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKTA 152

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ E+K +     +                 +  +    AISAL+ LGY   QA+  V
Sbjct: 153 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSSATSNNAEEEAISALLALGYKPTQASKVV 212

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             + K + +     Q+IR AL+++
Sbjct: 213 SQIAKPDMS---SEQMIREALKSM 233


>gi|15802274|ref|NP_288298.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7
           EDL933]
 gi|15831825|ref|NP_310598.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16129814|ref|NP_416375.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|26248127|ref|NP_754167.1| Holliday junction DNA helicase RuvA [Escherichia coli CFT073]
 gi|82543694|ref|YP_407641.1| Holliday junction DNA helicase RuvA [Shigella boydii Sb227]
 gi|89108701|ref|AP_002481.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|91211086|ref|YP_541072.1| Holliday junction DNA helicase RuvA [Escherichia coli UTI89]
 gi|110641979|ref|YP_669709.1| Holliday junction DNA helicase RuvA [Escherichia coli 536]
 gi|117624013|ref|YP_852926.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC
           O1]
 gi|157159402|ref|YP_001463164.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A]
 gi|168747889|ref|ZP_02772911.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757895|ref|ZP_02782902.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762345|ref|ZP_02787352.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770844|ref|ZP_02795851.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776592|ref|ZP_02801599.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783161|ref|ZP_02808168.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788281|ref|ZP_02813288.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC869]
 gi|168801903|ref|ZP_02826910.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC508]
 gi|170081517|ref|YP_001730837.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170683558|ref|YP_001743383.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5]
 gi|187730219|ref|YP_001879638.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94]
 gi|191173018|ref|ZP_03034552.1| Holliday junction DNA helicase RuvA [Escherichia coli F11]
 gi|193066070|ref|ZP_03047127.1| Holliday junction DNA helicase RuvA [Escherichia coli E22]
 gi|194429662|ref|ZP_03062180.1| Holliday junction DNA helicase RuvA [Escherichia coli B171]
 gi|195940293|ref|ZP_03085675.1| Holliday junction DNA helicase motor protein [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810719|ref|ZP_03252595.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816922|ref|ZP_03258042.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4045]
 gi|209396228|ref|YP_002270944.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919228|ref|YP_002293312.1| Holliday junction DNA helicase RuvA [Escherichia coli SE11]
 gi|215487074|ref|YP_002329505.1| Holliday junction DNA helicase RuvA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328695|ref|ZP_03444776.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554449|ref|YP_002387362.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI1]
 gi|218558726|ref|YP_002391639.1| Holliday junction DNA helicase RuvA [Escherichia coli S88]
 gi|218689799|ref|YP_002398011.1| Holliday junction DNA helicase RuvA [Escherichia coli ED1a]
 gi|218695427|ref|YP_002403094.1| Holliday junction DNA helicase RuvA [Escherichia coli 55989]
 gi|218699567|ref|YP_002407196.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI39]
 gi|218705362|ref|YP_002412881.1| Holliday junction DNA helicase RuvA [Escherichia coli UMN026]
 gi|227885711|ref|ZP_04003516.1| Holliday junction DNA helicase motor protein [Escherichia coli
           83972]
 gi|237705815|ref|ZP_04536296.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA]
 gi|238901076|ref|YP_002926872.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli BW2952]
 gi|254793485|ref|YP_003078322.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256022473|ref|ZP_05436338.1| Holliday junction DNA helicase RuvA [Escherichia sp. 4_1_40B]
 gi|260844205|ref|YP_003221983.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O103:H2 str. 12009]
 gi|261227638|ref|ZP_05941919.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258196|ref|ZP_05950729.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283043|ref|YP_003499861.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           O55:H7 str. CB9615]
 gi|293405356|ref|ZP_06649348.1| ruvA [Escherichia coli FVEC1412]
 gi|293410173|ref|ZP_06653749.1| Holliday junction DNA helicase RuvA [Escherichia coli B354]
 gi|293415176|ref|ZP_06657819.1| Holliday junction DNA helicase RuvA [Escherichia coli B185]
 gi|293446248|ref|ZP_06662670.1| Holliday junction DNA helicase RuvA [Escherichia coli B088]
 gi|298380998|ref|ZP_06990597.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           FVEC1302]
 gi|300824197|ref|ZP_07104315.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7]
 gi|300899111|ref|ZP_07117394.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1]
 gi|300904745|ref|ZP_07122575.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1]
 gi|300917562|ref|ZP_07134217.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1]
 gi|300935836|ref|ZP_07150794.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1]
 gi|300982165|ref|ZP_07175900.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1]
 gi|300994110|ref|ZP_07180693.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1]
 gi|301018303|ref|ZP_07182812.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1]
 gi|301029311|ref|ZP_07192408.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1]
 gi|301050785|ref|ZP_07197642.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1]
 gi|301304450|ref|ZP_07210562.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1]
 gi|306814309|ref|ZP_07448475.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101]
 gi|307138524|ref|ZP_07497880.1| Holliday junction DNA helicase RuvA [Escherichia coli H736]
 gi|312967063|ref|ZP_07781281.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75]
 gi|331642475|ref|ZP_08343610.1| holliday junction DNA helicase RuvA [Escherichia coli H736]
 gi|331647458|ref|ZP_08348550.1| holliday junction DNA helicase RuvA [Escherichia coli M605]
 gi|331653270|ref|ZP_08354275.1| holliday junction DNA helicase RuvA [Escherichia coli M718]
 gi|331657910|ref|ZP_08358872.1| holliday junction DNA helicase RuvA [Escherichia coli TA206]
 gi|331673391|ref|ZP_08374159.1| holliday junction DNA helicase RuvA [Escherichia coli TA280]
 gi|331677742|ref|ZP_08378417.1| holliday junction DNA helicase RuvA [Escherichia coli H591]
 gi|331683367|ref|ZP_08383968.1| holliday junction DNA helicase RuvA [Escherichia coli H299]
 gi|67472389|sp|P0A809|RUVA_ECOLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67472390|sp|P0A810|RUVA_ECOL6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67472391|sp|P0A811|RUVA_ECO57 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90135806|sp|Q322E5|RUVA_SHIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123343927|sp|Q0TGX1|RUVA_ECOL5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123387921|sp|Q1RAS3|RUVA_ECOUT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230548|sp|A1AC22|RUVA_ECOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167012658|sp|A7ZMY5|RUVA_ECO24 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698730|sp|B5YR06|RUVA_ECO5E RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698731|sp|B6IBU0|RUVA_ECOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725440|sp|B7MBS0|RUVA_ECO45 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725441|sp|B7NS57|RUVA_ECO7I RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725442|sp|B7M2F2|RUVA_ECO8A RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725443|sp|B7NBL2|RUVA_ECOLU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725444|sp|B1LD10|RUVA_ECOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560029|sp|B1XHC9|RUVA_ECODH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560128|sp|B2TWQ2|RUVA_SHIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766959|sp|B7USN8|RUVA_ECO27 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766960|sp|B7L7R4|RUVA_ECO55 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766961|sp|B7MVP7|RUVA_ECO81 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|259495641|sp|C4ZQE5|RUVA_ECOBW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|5107494|pdb|1BDX|A Chain A, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|5107495|pdb|1BDX|B Chain B, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|5107496|pdb|1BDX|C Chain C, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|5107497|pdb|1BDX|D Chain D, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|9955149|pdb|1C7Y|A Chain A, E.Coli Ruva-Holliday Junction Complex
 gi|157831340|pdb|1HJP|A Chain A, Holliday Junction Binding Protein Ruva From E. Coli
 gi|12515917|gb|AAG56851.1|AE005408_9 Holliday junction helicase subunit B; branch migration; repair
           [Escherichia coli O157:H7 str. EDL933]
 gi|26108530|gb|AAN80732.1|AE016761_307 Holliday junction DNA helicase ruvA [Escherichia coli CFT073]
 gi|147782|gb|AAA24612.1| ruvA protein (gtg start) [Escherichia coli]
 gi|1736508|dbj|BAA15672.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|1788168|gb|AAC74931.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13362039|dbj|BAB35994.1| Holliday junction helicase subunit B [Escherichia coli O157:H7 str.
           Sakai]
 gi|81245105|gb|ABB65813.1| Holliday junction helicase subunit B [Shigella boydii Sb227]
 gi|91072660|gb|ABE07541.1| RuvA protein, Holliday junction helicase subunit B [Escherichia
           coli UTI89]
 gi|110343571|gb|ABG69808.1| holliday junction DNA helicase RuvA [Escherichia coli 536]
 gi|115513137|gb|ABJ01212.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC
           O1]
 gi|157081432|gb|ABV21140.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A]
 gi|169889352|gb|ACB03059.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170521276|gb|ACB19454.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5]
 gi|187427211|gb|ACD06485.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94]
 gi|187768087|gb|EDU31931.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017456|gb|EDU55578.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999499|gb|EDU68485.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355165|gb|EDU73584.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360288|gb|EDU78707.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367348|gb|EDU85764.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372002|gb|EDU90418.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC869]
 gi|189376026|gb|EDU94442.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC508]
 gi|190906729|gb|EDV66334.1| Holliday junction DNA helicase RuvA [Escherichia coli F11]
 gi|192926307|gb|EDV80944.1| Holliday junction DNA helicase RuvA [Escherichia coli E22]
 gi|194412304|gb|EDX28608.1| Holliday junction DNA helicase RuvA [Escherichia coli B171]
 gi|195182923|dbj|BAG66491.1| Holliday junction helicase subunit B [Escherichia coli O111:H-]
 gi|208725235|gb|EDZ74942.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731265|gb|EDZ79954.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4045]
 gi|209157628|gb|ACI35061.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209767468|gb|ACI82046.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767470|gb|ACI82047.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767472|gb|ACI82048.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767474|gb|ACI82049.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767476|gb|ACI82050.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209912487|dbj|BAG77561.1| holliday junction helicase subunit RuvA [Escherichia coli SE11]
 gi|215265146|emb|CAS09534.1| RuvA component of RuvABC resolvasome, regulatory subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217318042|gb|EEC26469.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352159|emb|CAU97898.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli 55989]
 gi|218361217|emb|CAQ98801.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli IAI1]
 gi|218365495|emb|CAR03222.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli S88]
 gi|218369553|emb|CAR17322.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli IAI39]
 gi|218427363|emb|CAR08163.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli ED1a]
 gi|218432459|emb|CAR13352.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli UMN026]
 gi|222033610|emb|CAP76351.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           LF82]
 gi|226900572|gb|EEH86831.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA]
 gi|227837284|gb|EEJ47750.1| Holliday junction DNA helicase motor protein [Escherichia coli
           83972]
 gi|238860169|gb|ACR62167.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli BW2952]
 gi|254592885|gb|ACT72246.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|257759352|dbj|BAI30849.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O103:H2 str. 12009]
 gi|260449016|gb|ACX39438.1| Holliday junction DNA helicase RuvA [Escherichia coli DH1]
 gi|281178931|dbj|BAI55261.1| holliday junction helicase subunit RuvA [Escherichia coli SE15]
 gi|284921781|emb|CBG34854.1| holliday junction ATP-dependent DNA helicase [Escherichia coli 042]
 gi|290762916|gb|ADD56877.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323078|gb|EFE62506.1| Holliday junction DNA helicase RuvA [Escherichia coli B088]
 gi|291427564|gb|EFF00591.1| ruvA [Escherichia coli FVEC1412]
 gi|291432824|gb|EFF05803.1| Holliday junction DNA helicase RuvA [Escherichia coli B185]
 gi|291470641|gb|EFF13125.1| Holliday junction DNA helicase RuvA [Escherichia coli B354]
 gi|294493531|gb|ADE92287.1| Holliday junction DNA helicase RuvA [Escherichia coli IHE3034]
 gi|298278440|gb|EFI19954.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           FVEC1302]
 gi|299877737|gb|EFI85948.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1]
 gi|300297540|gb|EFJ53925.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1]
 gi|300307321|gb|EFJ61841.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1]
 gi|300357268|gb|EFJ73138.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1]
 gi|300399739|gb|EFJ83277.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1]
 gi|300403329|gb|EFJ86867.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1]
 gi|300406372|gb|EFJ89910.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1]
 gi|300415216|gb|EFJ98526.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1]
 gi|300458948|gb|EFK22441.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1]
 gi|300523268|gb|EFK44337.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7]
 gi|300840301|gb|EFK68061.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1]
 gi|305852468|gb|EFM52919.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101]
 gi|307553880|gb|ADN46655.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli
           ABU 83972]
 gi|307626656|gb|ADN70960.1| Holliday junction DNA helicase RuvA [Escherichia coli UM146]
 gi|312288527|gb|EFR16429.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75]
 gi|312946461|gb|ADR27288.1| Holliday junction DNA helicase RuvA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315136504|dbj|BAJ43663.1| Holliday junction DNA resolvasome [Escherichia coli DH1]
 gi|315257307|gb|EFU37275.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 85-1]
 gi|315286570|gb|EFU46005.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 110-3]
 gi|315290340|gb|EFU49716.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 153-1]
 gi|315296552|gb|EFU55849.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 16-3]
 gi|320173573|gb|EFW48768.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae CDC
           74-1112]
 gi|320182601|gb|EFW57490.1| Holliday junction DNA helicase RuvA [Shigella boydii ATCC 9905]
 gi|320187795|gb|EFW62469.1| Holliday junction DNA helicase RuvA [Shigella flexneri CDC 796-83]
 gi|320188562|gb|EFW63224.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194423|gb|EFW69054.1| Holliday junction DNA helicase RuvA [Escherichia coli WV_060327]
 gi|320641715|gb|EFX11103.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           G5101]
 gi|320647075|gb|EFX15908.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str.
           493-89]
 gi|320652358|gb|EFX20656.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str.
           H 2687]
 gi|320657959|gb|EFX25721.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658532|gb|EFX26226.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668430|gb|EFX35257.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323158654|gb|EFZ44668.1| holliday junction DNA helicase RuvA [Escherichia coli E128010]
 gi|323174753|gb|EFZ60369.1| holliday junction DNA helicase RuvA [Escherichia coli LT-68]
 gi|323186868|gb|EFZ72187.1| holliday junction DNA helicase RuvA [Escherichia coli RN587/1]
 gi|323940471|gb|EGB36662.1| Holliday junction DNA helicase RuvA [Escherichia coli E482]
 gi|323948253|gb|EGB44241.1| Holliday junction DNA helicase RuvA [Escherichia coli H120]
 gi|323952363|gb|EGB48236.1| Holliday junction DNA helicase RuvA [Escherichia coli H252]
 gi|323956492|gb|EGB52234.1| Holliday junction DNA helicase RuvA [Escherichia coli H263]
 gi|323968281|gb|EGB63688.1| Holliday junction DNA helicase RuvA [Escherichia coli M863]
 gi|323977955|gb|EGB73041.1| Holliday junction DNA helicase RuvA [Escherichia coli TW10509]
 gi|324007232|gb|EGB76451.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 57-2]
 gi|324012870|gb|EGB82089.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 60-1]
 gi|324018004|gb|EGB87223.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 117-3]
 gi|325496996|gb|EGC94855.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ECD227]
 gi|326342241|gb|EGD66022.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           1044]
 gi|326343791|gb|EGD67553.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           1125]
 gi|327252987|gb|EGE64641.1| holliday junction DNA helicase RuvA [Escherichia coli STEC_7v]
 gi|330911671|gb|EGH40181.1| holliday junction DNA helicase RuvA [Escherichia coli AA86]
 gi|331039273|gb|EGI11493.1| holliday junction DNA helicase RuvA [Escherichia coli H736]
 gi|331043182|gb|EGI15320.1| holliday junction DNA helicase RuvA [Escherichia coli M605]
 gi|331049368|gb|EGI21440.1| holliday junction DNA helicase RuvA [Escherichia coli M718]
 gi|331056158|gb|EGI28167.1| holliday junction DNA helicase RuvA [Escherichia coli TA206]
 gi|331069589|gb|EGI40976.1| holliday junction DNA helicase RuvA [Escherichia coli TA280]
 gi|331074202|gb|EGI45522.1| holliday junction DNA helicase RuvA [Escherichia coli H591]
 gi|331079582|gb|EGI50779.1| holliday junction DNA helicase RuvA [Escherichia coli H299]
 gi|332090038|gb|EGI95138.1| holliday junction DNA helicase RuvA [Shigella boydii 5216-82]
 gi|332096672|gb|EGJ01663.1| holliday junction DNA helicase RuvA [Shigella boydii 3594-74]
 gi|332343587|gb|AEE56921.1| holliday junction DNA helicase RuvA [Escherichia coli UMNK88]
 gi|333003565|gb|EGK23105.1| holliday junction DNA helicase RuvA [Shigella flexneri VA-6]
 gi|333004714|gb|EGK24237.1| holliday junction DNA helicase RuvA [Shigella flexneri K-272]
 gi|333018434|gb|EGK37732.1| holliday junction DNA helicase RuvA [Shigella flexneri K-227]
          Length = 203

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|86146483|ref|ZP_01064806.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222]
 gi|218709101|ref|YP_002416722.1| Holliday junction DNA helicase RuvA [Vibrio splendidus LGP32]
 gi|254767400|sp|B7VMI3|RUVA_VIBSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85835746|gb|EAQ53881.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222]
 gi|218322120|emb|CAV18233.1| Holliday junction DNA helicase ruvA [Vibrio splendidus LGP32]
          Length = 203

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +      +        + ++      A+SAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V K   +     Q+IR AL+++
Sbjct: 181 VSQVAK---DGMTSEQLIREALKSM 202


>gi|30063272|ref|NP_837443.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str.
           2457T]
 gi|30041524|gb|AAP17252.1| Holliday junction helicase subunit B [Shigella flexneri 2a str.
           2457T]
 gi|313650643|gb|EFS15045.1| holliday junction DNA helicase RuvA [Shigella flexneri 2a str.
           2457T]
 gi|332757632|gb|EGJ87965.1| holliday junction DNA helicase RuvA [Shigella flexneri 2747-71]
 gi|332758049|gb|EGJ88375.1| holliday junction DNA helicase RuvA [Shigella flexneri K-671]
 gi|333004779|gb|EGK24301.1| holliday junction DNA helicase RuvA [Shigella flexneri K-218]
 gi|333018630|gb|EGK37924.1| holliday junction DNA helicase RuvA [Shigella flexneri K-304]
          Length = 203

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +        +IR ALRA
Sbjct: 181 VSKIARPD---TSSETLIREALRA 201


>gi|290475277|ref|YP_003468165.1| Holliday junction helicase subunit A [Xenorhabdus bovienii SS-2004]
 gi|289174598|emb|CBJ81392.1| Holliday junction helicase, subunit A [Xenorhabdus bovienii
           SS-2004]
          Length = 205

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L +IG   TLF +  +R+D   L
Sbjct: 1   MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQEATLFTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAITSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    + +N         S       A SALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSNDINLPAVAKQANSNTDIEAEAASALVSLGYKLQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K     AD   +IR ALRA
Sbjct: 181 RMVSKVAK---PGADCETLIREALRA 203


>gi|77460629|ref|YP_350136.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf0-1]
 gi|90135610|sp|Q3K7V9|RUVA_PSEPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77384632|gb|ABA76145.1| holliday junction helicase subunit B [Pseudomonas fluorescens
           Pf0-1]
          Length = 202

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 109/205 (53%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R +F  L  + GVG ++A+ ++S +   EL+  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAGKRERDFFRELIRLNGVGPKLALALMSSLEVDELIRCVQSQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +      + V  +      + +   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKNRFKAWETSPAM-FALVPNQPDGPAPVNTAENDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ +K         +IR AL+ +
Sbjct: 180 ISAIKEK---GLSSEDMIRRALKGM 201


>gi|153832528|ref|ZP_01985195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01]
 gi|148871323|gb|EDL70195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01]
          Length = 223

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 21  IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +   +  +    AISAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K +       Q+IR AL+++
Sbjct: 201 VSQIAKPDM---TSEQLIREALKSM 222


>gi|269963130|ref|ZP_06177465.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3]
 gi|269832094|gb|EEZ86218.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3]
          Length = 223

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 21  IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +      +    AISAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAGSNNAEEEAISALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K +       Q+IR AL+++
Sbjct: 201 VSQIAKPDM---TSEQLIREALKSM 222


>gi|301645623|ref|ZP_07245552.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1]
 gi|301076155|gb|EFK90961.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1]
          Length = 203

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSESLIREALRA 201


>gi|74311809|ref|YP_310228.1| Holliday junction DNA helicase RuvA [Shigella sonnei Ss046]
 gi|90135833|sp|Q3Z2L9|RUVA_SHISS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|73855286|gb|AAZ87993.1| Holliday junction helicase subunit B [Shigella sonnei Ss046]
          Length = 203

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARTD---ASSETLIREALRA 201


>gi|170769415|ref|ZP_02903868.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627]
 gi|170121739|gb|EDS90670.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627]
          Length = 203

 Score =  261 bits (667), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPATDLVLTSPASPATEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|194433948|ref|ZP_03066220.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012]
 gi|194417820|gb|EDX33917.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012]
 gi|332095232|gb|EGJ00259.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 155-74]
          Length = 203

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYVLPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|24113211|ref|NP_707721.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 301]
 gi|110805805|ref|YP_689325.1| Holliday junction DNA helicase RuvA [Shigella flexneri 5 str. 8401]
 gi|44888467|sp|Q83KR4|RUVA_SHIFL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123342783|sp|Q0T3U5|RUVA_SHIF8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24052207|gb|AAN43428.1| Holliday junction helicase subunit B [Shigella flexneri 2a str.
           301]
 gi|110615353|gb|ABF04020.1| Holliday junction helicase [Shigella flexneri 5 str. 8401]
          Length = 203

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGPLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +        +IR ALRA
Sbjct: 181 VSKIARPD---TSSETLIREALRA 201


>gi|156973890|ref|YP_001444797.1| Holliday junction DNA helicase motor protein [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525484|gb|ABU70570.1| hypothetical protein VIBHAR_01600 [Vibrio harveyi ATCC BAA-1116]
          Length = 223

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 21  IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +   +  +    AISAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K +       Q+IR AL+++
Sbjct: 201 VSQIAKPDM---TSEQLIRKALKSM 222


>gi|82776447|ref|YP_402796.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae Sd197]
 gi|309789257|ref|ZP_07683850.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617]
 gi|90135814|sp|Q32HA0|RUVA_SHIDS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81240595|gb|ABB61305.1| Holliday junction helicase subunit B [Shigella dysenteriae Sd197]
 gi|308923011|gb|EFP68525.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617]
          Length = 203

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +        +IR ALRA
Sbjct: 181 VSKIARPD---VSSETLIREALRA 201


>gi|283785600|ref|YP_003365465.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
 gi|282949054|emb|CBG88657.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
          Length = 203

 Score =  260 bits (665), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPESGKEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        ++      A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAVEDGEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V + +   A    +IR ALRA
Sbjct: 181 VSKVARPD---ASSETLIREALRA 201


>gi|330811393|ref|YP_004355855.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379501|gb|AEA70851.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 202

 Score =  260 bits (665), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 112/205 (54%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R +F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFVGKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQSQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +V        N+  A   ++ S   +A++AL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEAVPAMFALVPNQPDAPAPAV-SAESDAVTALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ +K         +IR AL+ +
Sbjct: 180 ISAIKEK---GLSTEDMIRRALKGM 201


>gi|323495172|ref|ZP_08100257.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546]
 gi|323310612|gb|EGA63791.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546]
          Length = 205

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          + A   S  S    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPYTDAAPVDSAVQASQSSAEEEAVSALLALGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V+K E       Q+IR AL+++
Sbjct: 181 KVVSQVMKPEM---TSEQLIREALKSM 204


>gi|27365489|ref|NP_761017.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6]
 gi|161486619|ref|NP_935078.2| Holliday junction DNA helicase motor protein [Vibrio vulnificus
           YJ016]
 gi|320155872|ref|YP_004188251.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O]
 gi|29611844|sp|Q8DAN4|RUVA_VIBVU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888369|sp|Q7MJ77|RUVA_VIBVY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|27361637|gb|AAO10544.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6]
 gi|319931184|gb|ADV86048.1| holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O]
          Length = 204

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 103/206 (50%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +    S   +    +      +   S  S    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K +       Q+IR AL+++
Sbjct: 181 VVSQIAKPDM---TSEQLIREALKSM 203


>gi|84388519|ref|ZP_00991066.1| Holliday junction DNA helicase motor protein [Vibrio splendidus
           12B01]
 gi|84377068|gb|EAP93939.1| Holliday junction DNA helicase motor protein [Vibrio splendidus
           12B01]
          Length = 203

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +      +        + ++      A+SAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V K         Q+IR AL+++
Sbjct: 181 VAQVAK---GGMTSEQLIREALKSM 202


>gi|261340247|ref|ZP_05968105.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317332|gb|EFC56270.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC
           35316]
          Length = 203

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L   G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        S       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPSSDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V K +   A    +IR ALRA
Sbjct: 181 VSKVAKPD---AGSETLIREALRA 201


>gi|269138790|ref|YP_003295491.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella
           tarda EIB202]
 gi|267984451|gb|ACY84280.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella
           tarda EIB202]
 gi|304558782|gb|ADM41446.1| Holliday junction DNA helicase RuvA [Edwardsiella tarda FL6-60]
          Length = 202

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       V+++  GV Y +  P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGTILEKQPPQVVLETHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   LS  +      +        +       A++AL+ LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLSGDLFTPTDDL-PPSTQPQAQADAEGEAVAALIALGYKPQEASRL 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V       AD   +IR ALRA
Sbjct: 180 VNRVTVA---GADSETLIRDALRA 200


>gi|194439064|ref|ZP_03071147.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1]
 gi|253773182|ref|YP_003036013.1| Holliday junction DNA helicase RuvA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161921|ref|YP_003045029.1| Holliday junction DNA helicase RuvA [Escherichia coli B str.
           REL606]
 gi|300928892|ref|ZP_07144397.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1]
 gi|194422023|gb|EDX38027.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1]
 gi|242377582|emb|CAQ32337.1| branch migration of Holliday structures; repair, subunit of
           resolvasome [Escherichia coli BL21(DE3)]
 gi|253324226|gb|ACT28828.1| Holliday junction DNA helicase RuvA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973822|gb|ACT39493.1| Holliday junction DNA helicase motor protein [Escherichia coli B
           str. REL606]
 gi|253978016|gb|ACT43686.1| Holliday junction DNA helicase motor protein [Escherichia coli
           BL21(DE3)]
 gi|300463120|gb|EFK26613.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1]
 gi|323961916|gb|EGB57515.1| Holliday junction DNA helicase RuvA [Escherichia coli H489]
 gi|323972631|gb|EGB67834.1| Holliday junction DNA helicase RuvA [Escherichia coli TA007]
          Length = 203

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y +  P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATNDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|296101800|ref|YP_003611946.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056259|gb|ADF60997.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 204

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L   G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L   +    +  V        S       A++ALV LGY   +A+ 
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPVSDDDAEQEAVAALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K +   A    +IR ALRA
Sbjct: 181 MVSKIAKPD---ASSETLIREALRA 202


>gi|218548578|ref|YP_002382369.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ATCC
           35469]
 gi|226725445|sp|B7LPI3|RUVA_ESCF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218356119|emb|CAQ88736.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 203

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 3/202 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  + + +   A    +IR AL
Sbjct: 181 VSKIARPD---ASSETLIREAL 199


>gi|148977429|ref|ZP_01814029.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium
           SWAT-3]
 gi|145963381|gb|EDK28646.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium
           SWAT-3]
          Length = 203

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +      +        + ++      A+SAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSMPTVHDAEEEAVSALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V K+        Q+IR AL+++
Sbjct: 181 VSQVAKEGM---TSEQLIRDALKSM 202


>gi|114047572|ref|YP_738122.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7]
 gi|117920401|ref|YP_869593.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3]
 gi|123326531|sp|Q0HUZ0|RUVA_SHESR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200264|sp|A0KWL8|RUVA_SHESA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113889014|gb|ABI43065.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7]
 gi|117612733|gb|ABK48187.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3]
          Length = 205

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLIDV GV Y +  P+ +   L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+     D   +I+ AL+++
Sbjct: 181 KAVSAAYKEGM---DSETLIKAALKSM 204


>gi|161502989|ref|YP_001570101.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864336|gb|ABX20959.1| hypothetical protein SARI_01051 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 3/203 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L+
Sbjct: 27  IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPESGKEAIIFTHFVVREDAQLLY 86

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K A
Sbjct: 87  GFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKTA 146

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ E+K +   L   +      +        +       A++ALV LGY   +A+  V
Sbjct: 147 ERLIVEMKDRFKGLHGDLFTPAVDLVLMSPASPTSEDAEQEAVAALVALGYKPQEASRMV 206

Query: 182 VSVLKKEKNIADDSQIIRLALRA 204
             V   +   A    +IR ALRA
Sbjct: 207 SKVAHSD---ASSETLIRDALRA 226


>gi|56460194|ref|YP_155475.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           loihiensis L2TR]
 gi|81363131|sp|Q5QYU4|RUVA_IDILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56179204|gb|AAV81926.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           loihiensis L2TR]
          Length = 205

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +       V++DVQG+ Y I  P+     L  +G+   L     +R+D   L
Sbjct: 1   MIGHIQGVLTSKQPPEVVLDVQGIGYEIQLPMTCFYQLPPVGETIKLITHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL   QGVG ++A+ +LS ++A E V ++   +   + ++PG+  K 
Sbjct: 61  YGFISASERSLFRLLLKTQGVGPKLALAILSGMSADEFVMAVNQNDVTRLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQAT 178
           A R++ E++ +           D + ++ +       P     +AISAL +LGY ++QA 
Sbjct: 121 AERLVIEMRDRLKDWQPSTPFTDRAPLDSQGMDAREHPADARTDAISALQSLGYKENQAE 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+  V   E N      +IRLAL+ +S
Sbjct: 181 KALQKVYSAEHN---SETLIRLALKQLS 205


>gi|238754860|ref|ZP_04616210.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri
           ATCC 29473]
 gi|238706871|gb|EEP99238.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri
           ATCC 29473]
          Length = 204

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G I       VL++  GV Y I  P+     L +IG    +F +  +R+D   L
Sbjct: 1   MIGRIRGIILEKQPPLVLLETNGVGYEIQLPMTCFYELPEIGQEAIIFTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + S +     +   S       A+SALV+LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTSDIPLPTTSAQVSAADAEAEAVSALVSLGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K      D   +IR ALR+
Sbjct: 181 LVSKIAK---PGTDCETLIRDALRS 202


>gi|146306303|ref|YP_001186768.1| Holliday junction DNA helicase motor protein [Pseudomonas mendocina
           ymp]
 gi|145574504|gb|ABP84036.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas mendocina
           ymp]
          Length = 202

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 113/205 (55%), Gaps = 5/205 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +      ++L+DV GV Y +  P+ TL  L  +G+  TL     +R+D   L+
Sbjct: 3   IGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGETLTLHTHQVVREDAHLLY 62

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K A
Sbjct: 63  GFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALTKVPGVGKKTA 122

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL++LGY   +A+ AV
Sbjct: 123 ERLLVELKDRFKAWETMPA--IATLVVEPRLGATVSSAENDAVSALISLGYKPQEASRAV 180

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
            +V   +++      +IR ALR ++
Sbjct: 181 AAV---KEDGLSSEDLIRRALRGMA 202


>gi|315180569|gb|ADT87483.1| Holliday junction DNA helicase motor protein [Vibrio furnissii NCTC
           11218]
          Length = 205

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IGD   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          +        +    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPLDAMGASHDQNAEEEAVSALLALGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV  V + +       Q+IR AL+++
Sbjct: 181 KAVSQVSQPDM---TSEQLIREALKSM 204


>gi|212212080|ref|YP_002303016.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuG_Q212]
 gi|226698728|sp|B6IYU3|RUVA_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212010490|gb|ACJ17871.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212]
          Length = 200

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G I      Y+L++V GV Y I  P+ T   L +  +   L+    +R+D   L
Sbjct: 1   MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+ F  L  V GVG ++A+ +LS I   E V  ++ QN   + +IPG+  K 
Sbjct: 61  YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E K +            +     +    S      +AISAL+ LGY   +A  A
Sbjct: 121 AERLVIETKDRLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K +        +IRLAL+ +
Sbjct: 175 IDAIQKPD---LSAETLIRLALKQM 196


>gi|227111608|ref|ZP_03825264.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 205

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S   +    A    +      A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPAAADSRVSDPETEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + + +   AD   +IR ALRA
Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203


>gi|237731899|ref|ZP_04562380.1| holliday junction helicase subunit B [Citrobacter sp. 30_2]
 gi|226907438|gb|EEH93356.1| holliday junction helicase subunit B [Citrobacter sp. 30_2]
          Length = 203

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDTEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|238756969|ref|ZP_04618157.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae
           ATCC 35236]
 gi|238704799|gb|EEP97328.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae
           ATCC 35236]
          Length = 205

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  +G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPNVGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  +   +    ++    S       A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALR+
Sbjct: 181 RLVSKIAK---PGADCETLIRDALRS 203


>gi|85712318|ref|ZP_01043369.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           baltica OS145]
 gi|85693945|gb|EAQ31892.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           baltica OS145]
          Length = 206

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VL+DVQGV Y I  P+     L   G+  TL     +R+D   L
Sbjct: 1   MIGQIRGTLVSKQPPEVLVDVQGVGYEIQLPMTCFYQLPATGEPVTLVTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F LL   QGVG ++A+ +LS + A E V ++   +   + ++PG+  K 
Sbjct: 61  YGFNSLAERSLFRLLIKTQGVGPKLALAILSGMNADEFVWAVNQNDVSRLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQA 177
           A R++ E++ +      SS    D + ++         P     +A+SAL+ LGY   QA
Sbjct: 121 AERLVIEMRDRLKDWQGSSTPATDAAPLDNVSGDALVHPADARNDALSALLALGYKPVQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ +V ++ ++      +IR AL+ +S
Sbjct: 181 EKALKAVYQQGES---SETLIRSALKQLS 206


>gi|146312076|ref|YP_001177150.1| Holliday junction DNA helicase RuvA [Enterobacter sp. 638]
 gi|167012660|sp|A4WBL9|RUVA_ENT38 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145318952|gb|ABP61099.1| Holliday junction DNA helicase subunit RuvA [Enterobacter sp. 638]
          Length = 203

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L   G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPDAGKEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAHQFVNAVEREDPAALIKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +     +  +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPNGPTSDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K +   A+   +IR ALRA
Sbjct: 181 VSKIAKPD---ANSETLIREALRA 201


>gi|311279238|ref|YP_003941469.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1]
 gi|308748433|gb|ADO48185.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1]
          Length = 203

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L   G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPDQGKEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  FGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAAQFVNAVEREDPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAADDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  + + +   A+   +IR ALRA
Sbjct: 181 ISKIARPD---ANSETLIREALRA 201


>gi|295095544|emb|CBK84634.1| Holliday junction DNA helicase subunit RuvA [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 231

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 4/204 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       VL++V GV Y ++ P+     L + G    +F +  +R+D   L+
Sbjct: 29  IGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGKEAVVFTQFVVREDAQLLY 88

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K A
Sbjct: 89  GFNNKQERTLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKTA 148

Query: 122 SRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +   L   +    +  V        S       A++ALV LGY   +A+  
Sbjct: 149 ERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPASDDDAEQEAVAALVALGYKPQEASRM 208

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K +   A    +IR ALRA
Sbjct: 209 VSKIAKPD---ASSETLIREALRA 229


>gi|260768875|ref|ZP_05877809.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972]
 gi|260616905|gb|EEX42090.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972]
          Length = 205

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IGD   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          +        +    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPLDAMGAIHDQNAEEEAVSALLALGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV  V + +       Q+IR AL+++
Sbjct: 181 KAVSQVAQPDM---TSEQLIREALKSM 204


>gi|149366014|ref|ZP_01888049.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|153949523|ref|YP_001401004.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           31758]
 gi|161484795|ref|NP_669562.2| Holliday junction DNA helicase RuvA [Yersinia pestis KIM 10]
 gi|161511391|ref|NP_993241.2| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|161760577|ref|YP_070557.2| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           32953]
 gi|162420589|ref|YP_001606843.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola]
 gi|165928362|ref|ZP_02224194.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938889|ref|ZP_02227443.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009183|ref|ZP_02230081.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210491|ref|ZP_02236526.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401440|ref|ZP_02306937.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420007|ref|ZP_02311760.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424505|ref|ZP_02316258.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470862|ref|ZP_02335566.1| Holliday junction DNA helicase motor protein [Yersinia pestis FV-1]
 gi|170024378|ref|YP_001720883.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           YPIII]
 gi|186895407|ref|YP_001872519.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929164|ref|YP_002347039.1| Holliday junction DNA helicase RuvA [Yersinia pestis CO92]
 gi|229894771|ref|ZP_04509951.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Pestoides A]
 gi|229897474|ref|ZP_04512630.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229898120|ref|ZP_04513269.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901979|ref|ZP_04517100.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Nepal516]
 gi|270490837|ref|ZP_06207911.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27]
 gi|294503877|ref|YP_003567939.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           Z176003]
 gi|20455249|sp|Q8ZEU6|RUVA_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90146256|sp|Q66AU0|RUVA_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167012664|sp|A7FIC6|RUVA_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560143|sp|B2K323|RUVA_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560144|sp|A9QYX3|RUVA_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560145|sp|B1JLL1|RUVA_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115347775|emb|CAL20692.1| Holliday junction DNA helicase [Yersinia pestis CO92]
 gi|149292427|gb|EDM42501.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|152961018|gb|ABS48479.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           31758]
 gi|162353404|gb|ABX87352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola]
 gi|165913252|gb|EDR31875.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919645|gb|EDR36978.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991738|gb|EDR44039.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207671|gb|EDR52151.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961702|gb|EDR57723.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049136|gb|EDR60544.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056387|gb|EDR66156.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750912|gb|ACA68430.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           YPIII]
 gi|186698433|gb|ACC89062.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680875|gb|EEO76970.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Nepal516]
 gi|229688836|gb|EEO80903.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229693811|gb|EEO83860.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229702244|gb|EEO90263.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Pestoides A]
 gi|262362004|gb|ACY58725.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           D106004]
 gi|262365859|gb|ACY62416.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           D182038]
 gi|270339341|gb|EFA50118.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27]
 gi|294354336|gb|ADE64677.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           Z176003]
 gi|320015265|gb|ADV98836.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 204

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  +   ++    +   S       A SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 181 LVSKIAK---PGADCETLIRDALRA 202


>gi|304396235|ref|ZP_07378117.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB]
 gi|304356604|gb|EFM20969.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB]
          Length = 204

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VL++  GV Y IY P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCFYELPELQHEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D +      +           A++ALV+LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAEPETNDAESEAVAALVSLGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V + +   AD   +IR ALRA
Sbjct: 181 MISKVGRPD---ADCETLIREALRA 202


>gi|330502219|ref|YP_004379088.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01]
 gi|328916505|gb|AEB57336.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01]
          Length = 202

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 110/204 (53%), Gaps = 5/204 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +      ++L+DV GV Y +  P+ TL  L  +G+  TL     +R+D   L+
Sbjct: 3   IGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGEPVTLHAHLVVREDAHLLY 62

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K A
Sbjct: 63  GFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALVKVPGVGKKTA 122

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK +  +  S+       V  + A   S  S   +A+SAL++LGY   +A+ AV
Sbjct: 123 ERLLVELKDRFKAWESIPSIAPLVVEPQLAQAVS--SAENDAVSALISLGYKPQEASRAV 180

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            +V   +++      +IR ALR +
Sbjct: 181 AAV---KEDGMSSEDLIRRALRGM 201


>gi|300717084|ref|YP_003741887.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
 gi|299062920|emb|CAX60040.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
          Length = 205

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++     LF    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEANGVGYEVHMPMTCFYELPELNQEAILFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   +            +  E     +       A++ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGMHGDLFAADAPFALTSEVQPADAANDAEGEAVAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + + +   AD   +IR ALRA
Sbjct: 181 RMISKLGRPD---ADCETLIREALRA 203


>gi|123442635|ref|YP_001006612.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166231457|sp|A1JRJ9|RUVA_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122089596|emb|CAL12445.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 205

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  IG    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  +   +    ++    S       A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RLVSKIAK---PGADCETLIRDALRA 203


>gi|197335439|ref|YP_002155714.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11]
 gi|226698745|sp|B5FCQ1|RUVA_VIBFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|197316929|gb|ACH66376.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11]
          Length = 207

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GN+       +LI+V G+ Y +  P+     L ++G    ++    +R+D   L
Sbjct: 1   MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +     +        D + ++     I S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  V K +        +IR +L+++
Sbjct: 181 ASKTVSQVAKPDM---TSEVLIRESLKSM 206


>gi|323496589|ref|ZP_08101642.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326]
 gi|323318335|gb|EGA71293.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326]
          Length = 205

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 105/207 (50%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS--SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +    S   +          + A      S    A+SAL++LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSAPEVVQSSAEEEAVSALLSLGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  +L+   +     ++IR AL+++
Sbjct: 181 KVVSQILQPGMS---SEELIREALKSM 204


>gi|24373977|ref|NP_718020.1| Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1]
 gi|38372487|sp|Q8EEF2|RUVA_SHEON RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24348428|gb|AAN55464.1|AE015684_1 Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1]
          Length = 205

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLIDV GV Y +  P+ +   L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPELNQPTTVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +    +    + S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPVVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+     D   +I+ AL+++
Sbjct: 181 KAVSAAFKEGM---DSETLIKAALKSM 204


>gi|291617754|ref|YP_003520496.1| RuvA [Pantoea ananatis LMG 20103]
 gi|291152784|gb|ADD77368.1| RuvA [Pantoea ananatis LMG 20103]
          Length = 204

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L  +     +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEAHGVGYEVHMPMTCFYELPDLNHEAVIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D +                  A++ALV+LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPGPEPETNDAESEAVAALVSLGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V + +   AD   +IR ALRA
Sbjct: 181 MISKVGRPD---ADCETLIREALRA 202


>gi|283832740|ref|ZP_06352481.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC
           29220]
 gi|291072423|gb|EFE10532.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC
           29220]
          Length = 203

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +                A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPVTDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|149191831|ref|ZP_01870068.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1]
 gi|148834349|gb|EDL51349.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1]
          Length = 205

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y I  P+     L +IG    ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVGGVGYEIQMPMSCFYELPEIGQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS ++AT+ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVRERALFREVIKANGVGPKLGLGILSGMSATQFVACVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          +     +  +    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPVDSVGAMNADNAEEEAVSALLALGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V K +        +IR ALRA+
Sbjct: 181 KVVSQVAKPDM---TSEALIREALRAM 204


>gi|113970239|ref|YP_734032.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4]
 gi|123029678|sp|Q0HIZ2|RUVA_SHESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113884923|gb|ABI38975.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4]
          Length = 205

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLIDV GV Y +  P+ +   L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKKERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALLSLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+     D   +I+ AL+++
Sbjct: 181 KAVSAAYKEGM---DSETLIKAALKSM 204


>gi|261252501|ref|ZP_05945074.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891]
 gi|260935892|gb|EEX91881.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891]
          Length = 205

 Score =  257 bits (658), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNLGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS--SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +    S   +          +     +  S    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPADSVPQATQESAEEEAVSALLALGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V K + +     Q+IR AL+++
Sbjct: 181 KVVSQVKKADMS---SEQLIREALKSM 204


>gi|260772519|ref|ZP_05881435.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP
           69.14]
 gi|260611658|gb|EEX36861.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP
           69.14]
          Length = 205

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       ++I+V GV Y +  P+     L  I +   ++    +R+D   L
Sbjct: 1   MIGRLRGLLIEKQPPQIVIEVNGVGYEVQMPMSCFYELPNINEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLGILSGMTASQFVACVEREDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +     S  +          + + + +  +    AISAL++LGY   QA+
Sbjct: 121 AERLLVEMKDRLKGWGSGDLFTPATDAAPLDHSPVTAEQNAQEEAISALLSLGYKPVQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  + K         Q+IR AL+++
Sbjct: 181 KVVSQMAKPGM---TSEQLIREALKSM 204


>gi|119472454|ref|ZP_01614553.1| Holliday junction DNA helicase motor protein [Alteromonadales
           bacterium TW-7]
 gi|119444891|gb|EAW26190.1| Holliday junction DNA helicase motor protein [Alteromonadales
           bacterium TW-7]
          Length = 205

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L K+G+   ++    +R+D   L
Sbjct: 1   MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGENTIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L    GVG ++ + +LS ++A + V  +  +++  + ++PG+  K 
Sbjct: 61  FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +     + +      S V +  +      + A +A+SALV LGY   QA 
Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPHSDALVANNAADDAVSALVALGYKLPQAQ 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV K + +      +I+ +L+++
Sbjct: 181 KAVKSVSKPDMS---TEVLIKESLKSM 204


>gi|315122880|ref|YP_004063369.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496282|gb|ADR52881.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 208

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 166/208 (79%), Positives = 193/208 (92%), Gaps = 1/208 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKIKGNIEGLYEDYVLIDVQG+CYI+YCPIRTLSCLGKIGDFCTLFVETH+RQDQIRL
Sbjct: 1   MIGKIKGNIEGLYEDYVLIDVQGICYIVYCPIRTLSCLGKIGDFCTLFVETHVRQDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLSDL+R+WF+LLQSVQGVGARVAMGVLSRIT  ELV+SIILQN+K++AQIPGI  K+
Sbjct: 61  FGFLSDLERKWFVLLQSVQGVGARVAMGVLSRITPVELVDSIILQNNKILAQIPGIGAKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179
           ++RIM ELKGKA+SLSS  ++++SC+N E++++  SM S AI+AISALVNLGYGQDQAT 
Sbjct: 121 SNRIMIELKGKAVSLSSSEKKEISCLNGEKSNVCESMSSSAIDAISALVNLGYGQDQATV 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AVVS+LKKEKNI DDSQIIRLALR ++C
Sbjct: 181 AVVSILKKEKNITDDSQIIRLALREMTC 208


>gi|59711558|ref|YP_204334.1| Holliday junction DNA helicase motor protein [Vibrio fischeri
           ES114]
 gi|71649480|sp|Q5E6A0|RUVA_VIBF1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|59479659|gb|AAW85446.1| component of RuvABC resolvasome, regulatory subunit [Vibrio
           fischeri ES114]
          Length = 207

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 105/209 (50%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GN+       +LI+V G+ Y +  P+     L ++G    ++    +R+D   L
Sbjct: 1   MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +     +        D + ++     I S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K +        +IR +L+++
Sbjct: 181 ASKTVSQIAKPDM---TSEVLIRESLKSM 206


>gi|157830735|pdb|1CUK|A Chain A, Escherichia Coli Ruva Protein At Ph 4.9 And Room
           Temperature
 gi|581226|emb|CAA30119.1| unnamed protein product [Escherichia coli]
          Length = 203

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ LV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVARLVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIREALRA 201


>gi|152970923|ref|YP_001336032.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206580323|ref|YP_002237747.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342]
 gi|238895438|ref|YP_002920173.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041978|ref|ZP_06015160.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934605|ref|YP_003438664.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22]
 gi|290508806|ref|ZP_06548177.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55]
 gi|330001163|ref|ZP_08303909.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3]
 gi|166230560|sp|A6TB31|RUVA_KLEP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698734|sp|B5XQ04|RUVA_KLEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150955772|gb|ABR77802.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206569381|gb|ACI11157.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342]
 gi|238547755|dbj|BAH64106.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040676|gb|EEW41765.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288889314|gb|ADC57632.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22]
 gi|289778200|gb|EFD86197.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55]
 gi|328537774|gb|EGF63974.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3]
          Length = 203

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETAGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVASLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPAGPTADDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A+   +IR ALRA
Sbjct: 181 VSKIARPD---ANSETLIREALRA 201


>gi|89075787|ref|ZP_01162175.1| Holliday junction DNA helicase motor protein [Photobacterium sp.
           SKA34]
 gi|89048519|gb|EAR54094.1| Holliday junction DNA helicase motor protein [Photobacterium sp.
           SKA34]
          Length = 207

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+ L++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +              D +  N       +       A+SALV LGY    
Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPTLDTAASNAPIQDPSNQARAEDEAVSALVALGYKPQI 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   V  V + E +      IIR ALR++
Sbjct: 181 AAKVVSQVTQPEMS---SEAIIRDALRSM 206


>gi|209695355|ref|YP_002263284.1| Holliday junction DNA helicase RuvA [Aliivibrio salmonicida
           LFI1238]
 gi|226698724|sp|B6EGJ3|RUVA_ALISL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|208009307|emb|CAQ79573.1| holliday junction ATP-dependent DNA helicase RuvA [Aliivibrio
           salmonicida LFI1238]
          Length = 206

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GN+       +LI+V G+ Y +  P+     L  IG    +++   +R+D   L
Sbjct: 1   MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPPIGTEAIIYIHYVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTKKERALFREVIKANGVGPKLGLAILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+K +     +       D + ++     I S  S    A+SAL++LGY   QA
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPADTTSMDDASDLISSPQSAQDEAVSALISLGYKPVQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  V K +        +IR +L+++
Sbjct: 181 SKMVSQVAKPDM---TSESLIRESLKSM 205


>gi|261211909|ref|ZP_05926196.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341]
 gi|260839259|gb|EEX65891.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341]
          Length = 204

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176
           A R++ E+K +          D+     + A I S+P    +    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPIDSVPMMAQNAQEEAVSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  V K   +     ++IR AL+++
Sbjct: 178 ASKVVSQVAKAGMS---CEELIREALKSM 203


>gi|315126271|ref|YP_004068274.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp.
           SM9913]
 gi|315014785|gb|ADT68123.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp.
           SM9913]
          Length = 205

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L K+GD   ++    +R+D   L
Sbjct: 1   MIGRLNGVLVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGDNAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L    GVG ++ + +LS ++A + V  +  +++  + ++PG+  K 
Sbjct: 61  FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +  +  + +      S V +  +      + A +A+SALV LGY   QA 
Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPASDATIANNAADDAVSALVALGYKLPQAQ 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV K + +      +I+ +L+++
Sbjct: 181 KAVKSVSKPDMS---TEVLIKESLKSM 204


>gi|92113970|ref|YP_573898.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter
           salexigens DSM 3043]
 gi|91797060|gb|ABE59199.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter
           salexigens DSM 3043]
          Length = 206

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +   + TL  L   G+   L     +R+D   L
Sbjct: 3   MIGRLRGTLLEKQPPWIVVDVGGVGYELETSMTTLLALPGPGEEVQLHTHLAVREDAHLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +RQ F  L  V GVG ++A+ +LS +     +  ++  + K + ++PG+  K 
Sbjct: 63  YGFARGDERQLFRALIKVNGVGPKLALAILSGMDQEAFIRCVMEDDIKALTRLPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +        +  +  +    +   + P    +A SALV LGY   +A+  
Sbjct: 123 AERLVVEMRDRFPHWQLEQENGLHALELGASPTTAAPDPQADAESALVALGYKPTEASRM 182

Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206
               L    +      +I+ AL R ++
Sbjct: 183 ----LSGLDDGLSTEGLIKAALARKLA 205


>gi|90580117|ref|ZP_01235925.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14]
 gi|90439002|gb|EAS64185.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14]
          Length = 207

 Score =  256 bits (656), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+ L++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +              D +  N       +       A+SALV LGY    
Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPALDTAASNAPIQDPSNQARAEDEAVSALVALGYKPQI 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   V  V + E +      IIR ALR++
Sbjct: 181 AAKVVSQVTQPEMS---SEAIIRDALRSM 206


>gi|15641848|ref|NP_231480.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591344|ref|ZP_01678632.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80]
 gi|121730273|ref|ZP_01682649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52]
 gi|147675231|ref|YP_001217380.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395]
 gi|153824054|ref|ZP_01976721.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|227081975|ref|YP_002810526.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2]
 gi|229508057|ref|ZP_04397562.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286]
 gi|229511704|ref|ZP_04401183.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|229518843|ref|ZP_04408286.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9]
 gi|229607618|ref|YP_002878266.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236]
 gi|254848932|ref|ZP_05238282.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10]
 gi|255745394|ref|ZP_05419343.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101]
 gi|298498115|ref|ZP_07007922.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757]
 gi|20455267|sp|Q9KR01|RUVA_VIBCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172047659|sp|A5F761|RUVA_VIBC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767399|sp|C3LNE9|RUVA_VIBCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|9656374|gb|AAF94994.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546808|gb|EAX56974.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80]
 gi|121627975|gb|EAX60536.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52]
 gi|126518426|gb|EAZ75649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|146317114|gb|ABQ21653.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395]
 gi|227009863|gb|ACP06075.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2]
 gi|227013744|gb|ACP09954.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395]
 gi|229343532|gb|EEO08507.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9]
 gi|229351669|gb|EEO16610.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|229355562|gb|EEO20483.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286]
 gi|229370273|gb|ACQ60696.1| holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236]
 gi|254844637|gb|EET23051.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10]
 gi|255737224|gb|EET92620.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101]
 gi|297542448|gb|EFH78498.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757]
          Length = 204

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176
           A R++ E+K +          D+     + A + S P    +    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|91793239|ref|YP_562890.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans
           OS217]
 gi|122968746|sp|Q12N09|RUVA_SHEDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91715241|gb|ABE55167.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans
           OS217]
          Length = 203

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   +++DV GV Y +  P+ +   L ++    TL+    +R+D   L
Sbjct: 1   MIGRLNGILVEKHAPEIVLDVGGVGYELQVPMTSFYELPELEQSATLYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVSCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K  SL      +      +  +     +   +AISALV+LGY   QA+ A
Sbjct: 121 AERLVVEMRDKLKSLLEASVGNEREFMLQTNYTAPAANAEEDAISALVSLGYKPPQASRA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    K+     D   +I+LAL+++
Sbjct: 181 VSKAYKEGM---DTETLIKLALKSM 202


>gi|318605500|emb|CBY26998.1| holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 205

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  IG    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  +   +    ++    S       A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RLVSKIAK---PGADCEALIRDALRA 203


>gi|167552471|ref|ZP_02346224.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322886|gb|EDZ10725.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 203

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRIRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L+  +      +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLNGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIRDALRA 201


>gi|332161518|ref|YP_004298095.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665748|gb|ADZ42392.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860793|emb|CBX71080.1| holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           enterocolitica W22703]
          Length = 205

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  IG    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  ++  +    ++    S       A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNIGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RLVSKIAK---PGADCEALIRDALRA 203


>gi|77360814|ref|YP_340389.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas
           haloplanktis TAC125]
 gi|90135604|sp|Q3IIJ1|RUVA_PSEHT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76875725|emb|CAI86946.1| Holliday junction helicase, subunit A [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 205

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L K+G+   ++    +R+D   L
Sbjct: 1   MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGESAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++R  F  L    GVG ++ + +LS ++A + V  +  ++S  + ++PG+  K 
Sbjct: 61  FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDSTSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +  +  + +      S V +  +      + A +A+SALV+LGY   QA 
Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPFSDATIANNAADDAVSALVSLGYKLPQAQ 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV K + +      +I+ +L+++
Sbjct: 181 KAVKSVSKPDMS---TEVLIKESLKSM 204


>gi|37199217|dbj|BAC95049.1| holliday junction resolvasome, DNA-binding subunit [Vibrio
           vulnificus YJ016]
          Length = 206

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L+
Sbjct: 4   IGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ + +LS +TA++ V S+  ++   + ++PG+  K A
Sbjct: 64  GFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKTA 123

Query: 122 SRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +    S   +    +      +   S  S    A+SAL+ LGY   QA+  
Sbjct: 124 ERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQASKV 183

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K +       Q+IR AL+++
Sbjct: 184 VSQIAKPDM---TSEQLIREALKSM 205


>gi|322832435|ref|YP_004212462.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602]
 gi|321167636|gb|ADW73335.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602]
          Length = 204

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVHMPMTCFYELPELGQEAIIFTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEKEEITALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + + +     A           A++AL++LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNHTDITLPASASKAKESDAEGEAVAALISLGYKPPEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V K     A+   +IR ALRA
Sbjct: 181 MISKVAK---PGAESETLIREALRA 202


>gi|62180473|ref|YP_216890.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613551|ref|YP_001587516.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224583600|ref|YP_002637398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|75482773|sp|Q57NA2|RUVA_SALCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045767|sp|A9MUX3|RUVA_SALPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767385|sp|C0Q2F4|RUVA_SALPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|62128106|gb|AAX65809.1| Holliday junction helicase subunit A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161362915|gb|ABX66683.1| hypothetical protein SPAB_01271 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224468127|gb|ACN45957.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322714948|gb|EFZ06519.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 203

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +      +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VNKIARPD---ASSETLIRDALRA 201


>gi|330445532|ref|ZP_08309184.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489723|dbj|GAA03681.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 207

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+ L++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +              D +  N       +       A+SAL+ LGY    
Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPALDTAASNAPIQDPANQARAEDEAVSALIALGYKPQI 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   V  V + E +      IIR ALR++
Sbjct: 181 AAKVVSQVTQPEMS---SEAIIRDALRSM 206


>gi|16760845|ref|NP_456462.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765237|ref|NP_460852.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29141463|ref|NP_804805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413186|ref|YP_150261.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167994196|ref|ZP_02575288.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234044|ref|ZP_02659102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168241523|ref|ZP_02666455.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259832|ref|ZP_02681805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168462574|ref|ZP_02696505.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820718|ref|ZP_02832718.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446097|ref|YP_002041160.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451798|ref|YP_002045948.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471309|ref|ZP_03077293.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197247981|ref|YP_002146128.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263523|ref|ZP_03163597.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362112|ref|YP_002141749.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242475|ref|YP_002215191.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389612|ref|ZP_03216223.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205352399|ref|YP_002226200.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856584|ref|YP_002243235.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213426405|ref|ZP_03359155.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580455|ref|ZP_03362281.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609154|ref|ZP_03368980.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213859991|ref|ZP_03385695.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238912045|ref|ZP_04655882.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824023|ref|ZP_06543621.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|54039573|sp|P66747|RUVA_SALTI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042202|sp|P66746|RUVA_SALTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81361945|sp|Q5PN01|RUVA_SALPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698738|sp|B5F3J6|RUVA_SALA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698739|sp|B5FSN7|RUVA_SALDC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698740|sp|B5R1V8|RUVA_SALEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698741|sp|B5R8E2|RUVA_SALG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560123|sp|B4T7Z3|RUVA_SALHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560124|sp|B4SVE5|RUVA_SALNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560125|sp|B5BH60|RUVA_SALPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|25299990|pir||AC0743 Holliday junction DNA helicase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420431|gb|AAL20811.1| Holliday junction helicase subunit A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503142|emb|CAD05646.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137090|gb|AAO68654.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127443|gb|AAV76949.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194404760|gb|ACF64982.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410102|gb|ACF70321.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457673|gb|EDX46512.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634327|gb|EDX52679.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093589|emb|CAR59052.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211684|gb|ACH49081.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241778|gb|EDY24398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197936991|gb|ACH74324.1| holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602057|gb|EDZ00603.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205272180|emb|CAR37038.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205327892|gb|EDZ14656.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331994|gb|EDZ18758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339435|gb|EDZ26199.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342743|gb|EDZ29507.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350710|gb|EDZ37341.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708387|emb|CAR32691.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247066|emb|CBG24885.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993877|gb|ACY88762.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158416|emb|CBW17923.1| Holliday junction DNA helicase ruvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912889|dbj|BAJ36863.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085488|emb|CBY95269.1| Holliday junction ATP-dependent DNA helicase ruvA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321224538|gb|EFX49601.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130179|gb|ADX17609.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326627451|gb|EGE33794.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988789|gb|AEF07772.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 203

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +      +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIRDALRA 201


>gi|254506186|ref|ZP_05118330.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16]
 gi|219551004|gb|EED27985.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16]
          Length = 223

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       +LI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 21  IGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +    S   +    +      +   +  S    A+SAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSTPTATNSAEEEAVSALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++K   +     ++IR AL+++
Sbjct: 201 VAQIIKPGMS---SEELIRDALKSM 222


>gi|237809451|ref|YP_002893891.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187]
 gi|259495658|sp|C4LBN1|RUVA_TOLAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|237501712|gb|ACQ94305.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187]
          Length = 206

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DV GV Y +  P+     L  +G   T+     +R+D   L
Sbjct: 1   MIGRLHGIIIEKSPPEILLDVGGVGYELQLPMTCFYELPAVGQEATIITHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ ++S ++A + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTRQERTLFRELLKANGVGPKLALAIMSGMSANQFVSCVEREDVSSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL---SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+K +               +     +  +    +    A++AL+ LGY   QA
Sbjct: 121 AERLIVEMKDRLKGWISHDLFTPYTDAAPVDHEPSLAPADTVESEAVAALLALGYKPQQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  V+K E        +IR ALR++
Sbjct: 181 SLVVSKVIKPEM---TVENVIREALRSM 205


>gi|29654859|ref|NP_820551.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 493]
 gi|153208743|ref|ZP_01946981.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831144|ref|YP_001597405.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331]
 gi|165918688|ref|ZP_02218774.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334]
 gi|212219280|ref|YP_002306067.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuK_Q154]
 gi|44888458|sp|Q83BE2|RUVA_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045751|sp|A9N9A2|RUVA_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698727|sp|B6J505|RUVA_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29542128|gb|AAO91065.1| holliday junction DNA helicase [Coxiella burnetii RSA 493]
 gi|120575775|gb|EAX32399.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763011|gb|ABX78653.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331]
 gi|165917623|gb|EDR36227.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334]
 gi|212013542|gb|ACJ20922.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 200

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G I      Y+L++V GV Y I  P+ T   L +  +   L+    +R+D   L
Sbjct: 1   MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+ F  L  V GVG ++A+ +LS I   E V  ++ QN   + +IPG+  K 
Sbjct: 61  YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E K              +     +    S      +AISAL+ LGY   +A  A
Sbjct: 121 AERLVIETKDGLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K +        +IRLAL+ +
Sbjct: 175 IDAIQKPD---LSAETLIRLALKQM 196


>gi|168238525|ref|ZP_02663583.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736016|ref|YP_002114930.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204930984|ref|ZP_03221810.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|229560126|sp|B4TYR8|RUVA_SALSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194711518|gb|ACF90739.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288628|gb|EDY28003.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320028|gb|EDZ05233.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322616895|gb|EFY13803.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618133|gb|EFY15025.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625804|gb|EFY22623.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626256|gb|EFY23066.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632670|gb|EFY29415.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639014|gb|EFY35707.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640454|gb|EFY37107.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644219|gb|EFY40764.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649542|gb|EFY45974.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655449|gb|EFY51757.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660228|gb|EFY56466.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662909|gb|EFY59116.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668094|gb|EFY64253.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674146|gb|EFY70240.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675500|gb|EFY71574.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683086|gb|EFY79102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686780|gb|EFY82758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195329|gb|EFZ80509.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199221|gb|EFZ84316.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204054|gb|EFZ89069.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207477|gb|EFZ92425.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210663|gb|EFZ95541.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217461|gb|EGA02180.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221952|gb|EGA06342.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224438|gb|EGA08726.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231483|gb|EGA15596.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235925|gb|EGA20004.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240495|gb|EGA24538.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245387|gb|EGA29387.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247807|gb|EGA31745.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253606|gb|EGA37434.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255035|gb|EGA38823.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260268|gb|EGA43889.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266859|gb|EGA50345.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269065|gb|EGA52521.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 203

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +      +                A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPGSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIRDALRA 201


>gi|328473203|gb|EGF44051.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 10329]
          Length = 204

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSASASSNSAEEEAVSALLALGYKPTQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K + +     Q+IR AL+++
Sbjct: 181 VVSQIAKPDMS---SEQLIREALKSM 203


>gi|28897825|ref|NP_797430.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876984|ref|ZP_05889339.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AN-5034]
 gi|260901352|ref|ZP_05909747.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ4037]
 gi|31076902|sp|Q87QU8|RUVA_VIBPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28806038|dbj|BAC59314.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308093747|gb|EFO43442.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AN-5034]
 gi|308109588|gb|EFO47128.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ4037]
          Length = 204

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K + +     Q+IR AL+++
Sbjct: 181 VVSQIAKPDMS---SEQLIREALKSM 203


>gi|213649641|ref|ZP_03379694.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 203

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +       +      +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARPD---ASSETLIRDALRA 201


>gi|308049716|ref|YP_003913282.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica
           DSM 9799]
 gi|307631906|gb|ADN76208.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica
           DSM 9799]
          Length = 207

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       V+++  GV Y +  P+ +   L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGLLVEKAAPEVVLECGGVGYEVQLPMTSFYQLPELGSEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L    GVG ++A+G+LS ++A + V+++  +N   + ++PG+  K 
Sbjct: 61  YGFASKEERALFRELIKTNGVGPKMALGILSGMSAEQFVDAVQAENITGLTKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV----QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E++ +  +    +       ++  N  +  + S P    +AI+ALV LGY    
Sbjct: 121 AERLVVEMRDRLKNFGGPLLTPYADRLAGTNPTENTLVSAPDPEEDAIAALVALGYKAPA 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  V     +     Q+IR AL+A+
Sbjct: 181 ASKVVAKVAAPGMS---SEQLIRDALKAM 206


>gi|260779157|ref|ZP_05888049.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605321|gb|EEX31616.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 224

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L+
Sbjct: 21  IGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            R++ E+K +        +          + A      +    AISAL+ LGY   QA+ 
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPHTDAAPVDSAPQVDQANAEEEAISALLALGYKPTQASK 200

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  V   + +     ++IR AL+++
Sbjct: 201 VVSQVKTADMS---SEELIREALKSM 223


>gi|85059239|ref|YP_454941.1| Holliday junction DNA helicase motor protein [Sodalis glossinidius
           str. 'morsitans']
 gi|123752615|sp|Q2NTI9|RUVA_SODGM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84779759|dbj|BAE74536.1| holliday junction DNA helicase RuvA [Sodalis glossinidius str.
           'morsitans']
          Length = 205

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLLETHGVGYEVFMPMTCFYALPETGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R  F  L  V GVG ++A+ +LS ++A + + ++  Q    + ++PG+  K 
Sbjct: 61  FGFIHKQERVLFRELIKVNGVGPKLALAILSGMSAQQFISAVERQEINALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS    V Q    +                A++ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFVPQGAGEIPAAIDAPAMPADPEGEAVAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V       +D   +IR ALRA
Sbjct: 181 RMVSKVASA---GSDCEMLIRDALRA 203


>gi|229515226|ref|ZP_04404686.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21]
 gi|229347931|gb|EEO12890.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21]
          Length = 204

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176
           A R++ E+K +          D+     + A + S P    +    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPTTDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|183599000|ref|ZP_02960493.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827]
 gi|188021215|gb|EDU59255.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827]
          Length = 205

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +        + S       A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQHSDIKLPDVNVKVSSRADIEAEAATALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K +   +D   +IR ALRA
Sbjct: 181 RMVSKVAKPD---SDCESLIRDALRA 203


>gi|238751590|ref|ZP_04613080.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380]
 gi|238710152|gb|EEQ02380.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380]
          Length = 204

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  +   +     A   S       A SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASAAKTSDADIEAEAASALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 181 LVGKIAK---PGADCETLIRDALRA 202


>gi|153217384|ref|ZP_01951135.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587]
 gi|153830574|ref|ZP_01983241.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39]
 gi|229520306|ref|ZP_04409732.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80]
 gi|229523864|ref|ZP_04413269.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis
           VL426]
 gi|229529131|ref|ZP_04418521.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)]
 gi|124113602|gb|EAY32422.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587]
 gi|148873936|gb|EDL72071.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39]
 gi|229332905|gb|EEN98391.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)]
 gi|229337445|gb|EEO02462.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis
           VL426]
 gi|229342672|gb|EEO07664.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80]
 gi|327484398|gb|AEA78805.1| Holliday junction DNA helicase RuvA [Vibrio cholerae LMA3894-4]
          Length = 204

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176
           A R++ E+K +          D+     + A + S P    +    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|297579365|ref|ZP_06941293.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385]
 gi|297536959|gb|EFH75792.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385]
          Length = 204

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +        +    +      +      +    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGVGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V K   +     ++IR AL+++
Sbjct: 181 AVSQVAKAGMS---SEELIREALKSM 203


>gi|332534227|ref|ZP_08410072.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036307|gb|EGI72778.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 205

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L KIG+   ++    +R+D   L
Sbjct: 1   MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKIGENAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++R  F  L    GVG ++ + +LS ++A + V  +  ++S  + ++PG+  K 
Sbjct: 61  FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAKQFVSCVNNEDSTSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +     + +      S V +  +      + A +A+SAL+ LGY   QA 
Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPMSDATIANNAADDAVSALLALGYKLPQAQ 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV S+ K + +      +IR +L+++
Sbjct: 181 KAVKSISKPDMS---TEVLIRESLKSM 204


>gi|262404190|ref|ZP_06080745.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586]
 gi|262349222|gb|EEY98360.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586]
          Length = 204

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----INAISALVNLGYGQDQ 176
           A R++ E+K +          D+     + A I S+P+ A      AISAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPIDSVPALAQNAQDEAISALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  + K   +     ++IR AL+++
Sbjct: 178 ASKAVSQIAKAGMS---CEELIREALKSM 203


>gi|154707705|ref|YP_001423840.1| Holliday junction DNA helicase RuvA [Coxiella burnetii Dugway
           5J108-111]
 gi|189045750|sp|A9KF41|RUVA_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154356991|gb|ABS78453.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111]
          Length = 200

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G I      Y+L++V GV Y I  P+ T   L +      L+    +R+D   L
Sbjct: 1   MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQKEILLYTHLIVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+ F  L  V GVG ++A+ +LS I   E V  ++ QN   + +IPG+  K 
Sbjct: 61  YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E K              +     +    S      +AISAL+ LGY   +A  A
Sbjct: 121 AERLVIETKDGLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K +        +IRLAL+ +
Sbjct: 175 IDAIQKPD---LSAETLIRLALKQM 196


>gi|253989949|ref|YP_003041305.1| Holliday junction DNA helicase RuvA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639070|emb|CAR67683.1| holliday junction atp-dependent dna helicase ruva (ec 3.6.1.-)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781399|emb|CAQ84562.1| holliday junction ATP-dependent DNA helicase RuvA [Photorhabdus
           asymbiotica]
          Length = 205

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L  IG    LF    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDIGQETVLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N         S       A +ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPATAKQTTSDADIEAEAAAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V+K     AD   +IR ALRA
Sbjct: 181 RMVSKVVK---PGADCETLIREALRA 203


>gi|88861319|ref|ZP_01135950.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas
           tunicata D2]
 gi|88816698|gb|EAR26522.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas
           tunicata D2]
          Length = 205

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y ++ P+     L K G+  TL+    +R+D   L
Sbjct: 1   MIGRLSGILIEKQPPQILLDVAGVGYEVHLPMTCFYHLPKEGEKTTLYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L    GVG ++ + +LS ++A + V+ +  +++  + ++PG+  K 
Sbjct: 61  FGFNHKAERALFRELLKANGVGPKLGLAILSGMSADQFVQCVQHEDATSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +       +    S   V + Q       S   +AI+ALV LGY Q QA 
Sbjct: 121 AERLVLEMKDRLKDWGRDLFNPSSNELVLEMQNGPNVHDSAEDDAIAALVALGYKQAQAE 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V S+    K       +IR AL+++
Sbjct: 181 KTVKSLRAPGK---TSEVLIREALKSM 204


>gi|258621408|ref|ZP_05716442.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573]
 gi|258626836|ref|ZP_05721643.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603]
 gi|262165955|ref|ZP_06033692.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223]
 gi|258580883|gb|EEW05825.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603]
 gi|258586796|gb|EEW11511.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573]
 gi|262025671|gb|EEY44339.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223]
          Length = 204

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----INAISALVNLGYGQDQ 176
           A R++ E+K +          D+     + A I S P+ A      AISAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|262171190|ref|ZP_06038868.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451]
 gi|261892266|gb|EEY38252.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451]
          Length = 204

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVFCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----INAISALVNLGYGQDQ 176
           A R++ E+K +          D+     + A I S P+ A      AISAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ AV  V K   +     ++IR AL+++
Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203


>gi|220935403|ref|YP_002514302.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767396|sp|B8GUJ5|RUVA_THISH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219996713|gb|ACL73315.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 201

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L+DVQGV Y I  P+ T   L + G   TL    H+R+D   L
Sbjct: 1   MIGRLRGELVSKQPPFLLLDVQGVGYEIEAPLSTFYDLPEPGGQVTLHTHLHVREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +R  F  L  V GVGA++A+ +LS +TA+E    ++  +   + ++PGI  K 
Sbjct: 61  YGFASESERALFRSLIKVTGVGAKMALAILSGMTASEFSRCVMDGDVASLVRLPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +  SL + V        K  A     P    +A+SALV+LGY   +A+  
Sbjct: 121 AERLVVEMRDRLGSLPAAV---TLTGGKPAAAAARAPDPVSDAVSALVSLGYKPQEASRL 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + +V   E        +IRLAL+A
Sbjct: 178 ISAV---EGEAERSEDLIRLALKA 198


>gi|292488538|ref|YP_003531422.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           amylovora CFBP1430]
 gi|292899714|ref|YP_003539083.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199562|emb|CBJ46679.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553969|emb|CBA21014.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           amylovora CFBP1430]
 gi|312172681|emb|CBX80937.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           amylovora ATCC BAA-2158]
          Length = 204

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y +  P+     L  I     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPDIRQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++       + ++PG+  K 
Sbjct: 61  FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D       +    +       A++AL  LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMPKETGNDAESEAVAALTALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  + K +   AD   +IR ALRA
Sbjct: 181 MIGKIGKPD---ADCETLIREALRA 202


>gi|259908219|ref|YP_002648575.1| Holliday junction DNA helicase RuvA [Erwinia pyrifoliae Ep1/96]
 gi|224963841|emb|CAX55343.1| Holliday junction ATP-dependent DNA helicase [Erwinia pyrifoliae
           Ep1/96]
 gi|283478149|emb|CAY74065.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           pyrifoliae DSM 12163]
 gi|310767866|gb|ADP12816.1| Holliday junction DNA helicase RuvA [Erwinia sp. Ejp617]
          Length = 204

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y +  P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPELQQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++       + ++PG+  K 
Sbjct: 61  FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D       +    +       A++AL+ LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMTKETGNDAESEAVAALIALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K  K  AD   +IR ALRA
Sbjct: 181 MI---VKTGKPDADCETLIREALRA 202


>gi|307826389|ref|ZP_07656591.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum
           SV96]
 gi|307732566|gb|EFO03441.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum
           SV96]
          Length = 203

 Score =  253 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 4/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +      ++++DV GV Y +  P+ T   L  IG   TL     +R+D   L
Sbjct: 1   MIGFLRGKLAHKSPPFLMLDVNGVGYEVEAPMTTFYDLPAIGSEITLHTHLVVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ DR  F  L  V GVG ++A+ +LS  +A E    I   +++ + ++PG+  K 
Sbjct: 61  FGFSTEADRSMFRTLIKVNGVGPKLALTILSGQSAEEFHRCIHNNDTQALVRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   L+       + V      I  + +    AISAL +LGY    A   
Sbjct: 121 AERLVIEMRDRLPDLTDSFDSGGTSVAGVD-KIQPVNNPKQEAISALCSLGYKPLDAGKM 179

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++  + K+      IIRLAL+
Sbjct: 180 VQNISAEGKS---CEDIIRLALQ 199


>gi|238919502|ref|YP_002933017.1| Holliday junction DNA helicase RuvA [Edwardsiella ictaluri 93-146]
 gi|238869071|gb|ACR68782.1| holliday junction DNA helicase RuvA, putative [Edwardsiella
           ictaluri 93-146]
          Length = 204

 Score =  253 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 4/203 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       V+++  GV Y +  P+     L ++G    +F    +R+D   L+
Sbjct: 4   IGRLRGTILEKQPPQVVLEAHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K A
Sbjct: 64  GFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEVAALVKLPGVGKKTA 123

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ E+K +   LS  +    +      A   +       A++AL+ LGY   +A+  V
Sbjct: 124 ERLVVEMKDRFKGLSGDLFTP-ADAQLPSAQPQAQADAEGEAVAALIALGYKPQEASRLV 182

Query: 182 VSVLKKEKNIADDSQIIRLALRA 204
             V       AD   +IR ALRA
Sbjct: 183 NRVAVA---GADSETLIRDALRA 202


>gi|188533631|ref|YP_001907428.1| Holliday junction DNA helicase RuvA [Erwinia tasmaniensis Et1/99]
 gi|229560030|sp|B2VJ94|RUVA_ERWT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188028673|emb|CAO96535.1| Holliday junction ATP-dependent DNA helicase [Erwinia tasmaniensis
           Et1/99]
          Length = 204

 Score =  253 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y +  P+     L  I     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPVVLIEASGVGYEVQMPMTCFYELPDIQHEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D       +    +       A++AL  LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMPKETANDAEGEAVAALTALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +V V K +   AD   +IR ALRA
Sbjct: 181 MIVKVGKPD---ADCETLIREALRA 202


>gi|90408541|ref|ZP_01216698.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3]
 gi|90310360|gb|EAS38488.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3]
          Length = 207

 Score =  253 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+DV GV Y I  P+ +   L ++G    ++    +R+D   L
Sbjct: 1   MIGRLRGVLLEKQPPEVLLDVSGVGYEIQLPMSSFYPLPEVGQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F LL  V GVG ++A+ +LS ++A E V  I  +    + ++PG+  K 
Sbjct: 61  YGFADKHERAMFRLLIKVNGVGPKLALAILSGMSANEFVVCINNEAVSQLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +  +         Q +   +    ++  S+ +    AISAL+ LGY    
Sbjct: 121 AERLVVEMKDRLKNWVGTDLLSPQAESMDMQNGLSNTLSINTAKDEAISALLALGYKPAS 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   + +V +      D   +IR AL+++
Sbjct: 181 AEKCIRNVYQAGM---DCEDLIRSALKSM 206


>gi|330721244|gb|EGG99343.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC2047]
          Length = 197

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+IKG +       + +DVQGV Y +  P+ T   L  +    +L+    +R+D   L
Sbjct: 1   MIGRIKGVLIEKSPPDICVDVQGVGYELQVPMNTFYRLPDVDHPVSLYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +  + GVG ++ + +LS I A++ V  +   +   + ++PGI  K 
Sbjct: 61  YGFYEARERELFRAVIKINGVGPKLGLAILSGIEASDFVRVVHNNDVAALTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K            + +N   A           A+SAL+ LGY    A  A
Sbjct: 121 AERLVIEMRDKLKDWPEAPGDLQASLNSAAA------DGTDEAVSALLALGYKPKDAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S+  +  +     ++IR AL++++
Sbjct: 175 IKSIAVEGMS---SQELIRQALKSMA 197


>gi|153839740|ref|ZP_01992407.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ3810]
 gi|149746738|gb|EDM57726.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ3810]
          Length = 204

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 104/206 (50%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI++ G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEINGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K + +     Q+IR AL+++
Sbjct: 181 VVSQIAKPDMS---SEQLIREALKSM 203


>gi|300723091|ref|YP_003712389.1| Holliday junction helicase subunit A [Xenorhabdus nematophila ATCC
           19061]
 gi|297629606|emb|CBJ90209.1| Holliday junction helicase, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 205

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L +IG    LF +  +R+D   L
Sbjct: 1   MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQQAILFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N   A     S       A +ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPAAAKQTNSDADIEAEAAAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V+K     AD   +IR ALRA
Sbjct: 181 RMVSKVVK---PGADCETLIREALRA 203


>gi|109899252|ref|YP_662507.1| Holliday junction DNA helicase RuvA [Pseudoalteromonas atlantica
           T6c]
 gi|109701533|gb|ABG41453.1| Holliday junction DNA helicase subunit RuvA [Pseudoalteromonas
           atlantica T6c]
          Length = 209

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VLIDV GV Y I  P+ +   L ++G   +++    +R+D   L
Sbjct: 3   MIGRIRGTVVEKQPPEVLIDVAGVGYEIQIPMTSFYQLPEVGAEASVYTHFVVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L    GVG ++A+ +LS ++    ++ +  ++   + ++PG+  K 
Sbjct: 63  FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQHFMQCVAHEDITALVKLPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E++ +   LS          +   N  +    +       A+SAL+ LGY   Q
Sbjct: 123 AERLVIEMRDRFKKLSLEQSASDDFALQGNNSIENTFVTSSDAKEEALSALIALGYKAPQ 182

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + SV  K+       ++IR ALRA+
Sbjct: 183 ASKVINSVYVKD---ITSEELIREALRAM 208


>gi|108807436|ref|YP_651352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Antiqua]
 gi|108811697|ref|YP_647464.1| Holliday junction DNA helicase RuvA [Yersinia pestis Nepal516]
 gi|145598360|ref|YP_001162436.1| Holliday junction DNA helicase RuvA [Yersinia pestis Pestoides F]
 gi|21959100|gb|AAM85813.1|AE013828_4 Holliday junction helicase subunit B [Yersinia pestis KIM 10]
 gi|45436564|gb|AAS62118.1| Holliday junction helicase subunit B [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589648|emb|CAH21278.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775345|gb|ABG17864.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Nepal516]
 gi|108779349|gb|ABG13407.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Antiqua]
 gi|145210056|gb|ABP39463.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Pestoides F]
          Length = 226

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 4/204 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       VL++  GV Y +  P+     L ++G    +F +  +R+D   L+
Sbjct: 24  IGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLLY 83

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A
Sbjct: 84  GFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKTA 143

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +   L+  +  +   ++    +   S       A SALV LGY   +A+  
Sbjct: 144 ERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASRL 203

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K     AD   +IR ALRA
Sbjct: 204 VSKIAK---PGADCETLIRDALRA 224


>gi|254292161|ref|ZP_04962932.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226]
 gi|150421924|gb|EDN13900.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226]
          Length = 204

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176
           A R++ E+K +          D+     + A + S P    +    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWG---AADLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ A+  V K   +     ++IR AL+++
Sbjct: 178 ASKALSQVAKAGMS---SEELIREALKSM 203


>gi|261493369|ref|ZP_05989895.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496635|ref|ZP_05993015.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307838|gb|EEY09161.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311013|gb|EEY12190.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 201

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++         V+ EQ    + P  A  A+ AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKRMAQ--SDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V    K+ A   Q+IR AL+
Sbjct: 179 IKKV---NKSGATSEQLIREALK 198


>gi|332305758|ref|YP_004433609.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173087|gb|AEE22341.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 207

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VLIDV GV Y I  P+ +   L ++G+  +++    +R+D   L
Sbjct: 1   MIGRIRGTLIEKQPPEVLIDVSGVGYEIQIPMTSFYQLPEVGEQASVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L    GVG ++A+ +LS ++    ++ +  ++   + ++PG+  K 
Sbjct: 61  FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQNFMQCVAHEDITALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E++ +   LS          +   N  +    +       A+SAL+ LGY   Q
Sbjct: 121 AERLVIEMRDRFKKLSLEQSAGDDFTLQGSNGIENTFVTSTDAKEEALSALIALGYKAQQ 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + SV  K+        +IR ALRA+
Sbjct: 181 ASKVINSVYVKD---ITSEALIREALRAM 206


>gi|254360614|ref|ZP_04976763.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           PHL213]
 gi|153091154|gb|EDN73159.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           PHL213]
          Length = 201

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++         V+ EQ    + P  A  A+ AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKGMAQ--SDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V    K+ A   Q+IR AL+
Sbjct: 179 IKKV---NKSGATSEQLIREALK 198


>gi|126174263|ref|YP_001050412.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155]
 gi|153000824|ref|YP_001366505.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185]
 gi|160875532|ref|YP_001554848.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195]
 gi|217973219|ref|YP_002357970.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223]
 gi|304408864|ref|ZP_07390485.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183]
 gi|307302867|ref|ZP_07582622.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175]
 gi|166200260|sp|A3D480|RUVA_SHEB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200261|sp|A6WNQ3|RUVA_SHEB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045769|sp|A9L3H8|RUVA_SHEB9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767386|sp|B8EA74|RUVA_SHEB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|125997468|gb|ABN61543.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155]
 gi|151365442|gb|ABS08442.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185]
 gi|160861054|gb|ABX49588.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195]
 gi|217498354|gb|ACK46547.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223]
 gi|304352685|gb|EFM17082.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183]
 gi|306913227|gb|EFN43649.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175]
 gi|315267720|gb|ADT94573.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS678]
          Length = 205

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LIDV GV Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGVLVEKQAPEILIDVNGVGYELQMPLTSFYELPEVNHETMVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K+     D   +I+ AL+++
Sbjct: 181 KSVSAAYKEGM---DSETLIKAALKSM 204


>gi|119944489|ref|YP_942169.1| Holliday junction DNA helicase RuvA [Psychromonas ingrahamii 37]
 gi|166230588|sp|A1SSV5|RUVA_PSYIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119863093|gb|ABM02570.1| Holliday junction DNA helicase subunit RuvA [Psychromonas
           ingrahamii 37]
          Length = 207

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+ +   L   G    ++    +R+D   L
Sbjct: 1   MIGRLRGVLLEKQPPEVLIEVSGIGYEVQLPMSSFYALPDAGQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V+ I       + ++PG+  K 
Sbjct: 61  YGFADKHERAMFRELIKVNGVGPKLALAILSGMSANQFVQCIHNDAVTTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +  + +         D      E  +  +  +    AISALV+LGY    
Sbjct: 121 AERLVVEMKDRLKNWTGADLLTPASDKMVFENEFTNSAASGNAKDEAISALVSLGYKPVL 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  A+  V  +     D   +IR +L+++
Sbjct: 181 AEKAIQQVYVEGM---DCEALIRSSLKSM 206


>gi|127513004|ref|YP_001094201.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4]
 gi|166200262|sp|A3QEP4|RUVA_SHELP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126638299|gb|ABO23942.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4]
          Length = 205

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGLLVEKQAPEVLIETGGVGYEVQMPLTSFYELPELNQEAVIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA E V+ +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVKCVEHDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +         + +   +AISAL+ LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASHGNEREFVLQSNYTPAPVVNTAEEDAISALLALGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV ++     D   +I+ +L+++
Sbjct: 181 KAVSSVFEEGM---DSETLIKASLKSM 204


>gi|308125357|ref|ZP_05774780.2| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030]
 gi|308113231|gb|EFO50771.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030]
          Length = 223

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L+
Sbjct: 21  IGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K + +     Q+IR AL+++
Sbjct: 201 VSQIAKPDMS---SEQLIREALKSM 222


>gi|312882586|ref|ZP_07742326.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369746|gb|EFP97258.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 205

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILVEKQPPELLIEVNGLGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS--SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +    S   +          ++    S+ +    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPYTDAAVADKLPESSVSNAEEEAVSALLALGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V+ +  +     ++IR AL+++
Sbjct: 181 KVVSQVMVEGMS---SEKLIREALKSM 204


>gi|117618993|ref|YP_858104.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166229627|sp|A0KPA3|RUVA_AERHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117560400|gb|ABK37348.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 204

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V GV Y +  P+     L +IG   T+     +R+D   L
Sbjct: 1   MIGRLRGVVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS +TAT+ V S+  +    + ++PG+  K 
Sbjct: 61  YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     S  +          +      P  +  A SALV LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWVSHDLFSPAEITLPARESALRAPDSSEEAASALVALGYKPQQASQ 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  V     +      IIR ALR++
Sbjct: 181 IVSKVAA---DGMSVEDIIREALRSL 203


>gi|192360858|ref|YP_001981526.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107]
 gi|229560014|sp|B3PB58|RUVA_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190687023|gb|ACE84701.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107]
          Length = 205

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +      Y+L+DV GV Y +  P+ T   L  +G    L     + ++  +L
Sbjct: 1   MIGRLKGILIEKQPPYLLLDVNGVGYELQAPMTTFYRLPSLGHEVVLHTHLSITENLHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L  V GVG ++A+ +LS + + ++   +   N K + ++PGI  K 
Sbjct: 61  FGFAEQRDRSLFRTLIKVNGVGPKLAVAILSGMESDDIARCVRDNNIKALTRVPGIGQKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +  +    + Q     + E   I S       A SAL+ LGY    A   
Sbjct: 121 AERLVIELRDRLKNWD--LPQGDMLAHGEIQAIASDNDIYAEAESALIALGYKPVDAAKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V S  K++   A   ++IR+ALR+++
Sbjct: 179 VASAAKQKPE-ARSEELIRIALRSLA 203


>gi|120554625|ref|YP_958976.1| Holliday junction DNA helicase RuvA [Marinobacter aquaeolei VT8]
 gi|166230564|sp|A1U1C0|RUVA_MARAV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120324474|gb|ABM18789.1| Holliday junction DNA helicase subunit RuvA [Marinobacter aquaeolei
           VT8]
          Length = 209

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        L++  G+ Y I  P  T   L + G   TL     +R+D   L
Sbjct: 1   MIGRIRGMLIEKSPGQALVECSGLGYEIDIPYTTFFHLPETGQEVTLHTHFAVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S LDR  F LL  V GVG ++A+G+LS + A + +  +  +++  + ++PG+  K 
Sbjct: 61  YGFASRLDRNLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVEARDANSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+  +   L       Q D+           + P     A +AL+ LGY   +A
Sbjct: 121 AERLLIEMADRIGQLEGQFVPSQPDVPTGAGAATASQAGPDPREEAEAALIALGYKPQEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A+  V   + N      +IRLAL+ +
Sbjct: 181 AKAISKVAGPDMN---SETLIRLALKNM 205


>gi|90411664|ref|ZP_01219674.1| Holliday junction DNA helicase motor protein [Photobacterium
           profundum 3TCK]
 gi|90327554|gb|EAS43907.1| Holliday junction DNA helicase motor protein [Photobacterium
           profundum 3TCK]
          Length = 206

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       VLIDV G+ Y +  P+     L ++G    +     +R+D   L
Sbjct: 1   MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+  ++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E++ +               +  +  +    S       A+SAL+ LGY   QA
Sbjct: 121 AERLVIEMRDRLKGWGEGDLFTPASDAAASNAEVQQYSSARAEDEAVSALIALGYKAPQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  V+K E +      IIR ALR++
Sbjct: 181 AKVVSQVVKPEMS---SENIIREALRSM 205


>gi|325274574|ref|ZP_08140632.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51]
 gi|324100301|gb|EGB98089.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51]
          Length = 205

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  +      + V+       S  S   +AISALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPLPAASASSAEADAISALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  K+K      ++IR +L+ +
Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202


>gi|120598878|ref|YP_963452.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1]
 gi|146293036|ref|YP_001183460.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32]
 gi|166200263|sp|A4Y6S8|RUVA_SHEPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200265|sp|A1RJQ3|RUVA_SHESW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120558971|gb|ABM24898.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1]
 gi|145564726|gb|ABP75661.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32]
 gi|319426434|gb|ADV54508.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens 200]
          Length = 205

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 111/207 (53%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y +  P+ +   L +I     ++    +R+D   L
Sbjct: 1   MIGRLRGVLVEKQAPEILMDVNGVGYELQMPLTSFYELPEIDHETVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPTPTVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K+     D   +I+ AL+++
Sbjct: 181 KSVSAAYKEGM---DSETLIKAALKSM 204


>gi|114563352|ref|YP_750865.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB
           400]
 gi|122299598|sp|Q081N8|RUVA_SHEFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114334645|gb|ABI72027.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB
           400]
          Length = 205

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       V++DV GV Y +  P+ +   L  +     LF    +R+D   L
Sbjct: 1   MIGRLSGILVEKQAPEVVLDVNGVGYELQVPMTSFYELPALNQAAMLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVSCVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +        ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLVIEMRDKLKSLLEASAGSEREFMLQSNYTPAAAVDSAEEDAISALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K+  +      +I+ AL+++
Sbjct: 181 KSVSAAFKEGMS---SETLIKAALKSM 204


>gi|332290325|ref|YP_004421177.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179]
 gi|330433221|gb|AEC18280.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179]
          Length = 202

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +       +L++V G+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGHLRGILLEKSPPEILLEVNGIGYEVLLPMTSFYHLPEVNMEAAIYTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ +E   +I  +    + +IPG+  K 
Sbjct: 61  FGFYHKQDRTLFRELIKTNGVGPKLALAILSAMSVSEFSYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +        +     +        S   +AISALV LGY   +A   
Sbjct: 121 AERLIVELKGKFKAYQHDDFF-IEQTTTQSGIDTEKVSATDDAISALVALGYKPAEAEKM 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V K E    D  Q+IR AL++
Sbjct: 180 VKRVAKPE---WDSEQLIREALKS 200


>gi|110833613|ref|YP_692472.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2]
 gi|110646724|emb|CAL16200.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2]
          Length = 201

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y +  P+     L + G   TL     +R+D   L
Sbjct: 2   MIGQLRGTLLEKRPPVLLLDVNGVGYEVEAPMTVFYDLPEAGAELTLHTHFVVREDAQLL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  V GVG ++A+ +LS I A  L   I  Q++  + ++PGI  K 
Sbjct: 62  YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   +          V+ +Q           +AI+AL  LGY    A  A
Sbjct: 122 AERLVIEMRDRLDKIDGGPVSVPGRVDTDQPD-----DARSDAIAALEALGYRNKDAAVA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V     +E       Q+IR AL++++
Sbjct: 177 VGKAADQEG--MSSEQLIRKALKSLA 200


>gi|167623851|ref|YP_001674145.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis
           HAW-EB4]
 gi|189045770|sp|B0TSA6|RUVA_SHEHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167353873|gb|ABZ76486.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis
           HAW-EB4]
          Length = 205

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VL+DV GV Y I  P+ +   L ++G    ++    +R+D   L
Sbjct: 1   MIGRIRGLLIEKQAPEVLVDVSGVGYEIQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL    GVG ++ + +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFISKQERSLFRLLIKANGVGPKLGLTILSGMTAREFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +        ++ +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPEAVNTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV     +      +I+ AL+++
Sbjct: 181 KAVSSVY---TDGMSSETLIKSALKSM 204


>gi|37526027|ref|NP_929371.1| Holliday junction DNA helicase motor protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|44888380|sp|Q7N548|RUVA_PHOLL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|36785457|emb|CAE14404.1| Holliday junction DNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 205

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L   G    LF    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDAGQEAVLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEREAIVSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N         S       A +ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPATAKQTTSDADSEAEAAAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RMVSKIAK---PGADCETLIREALRA 203


>gi|332993889|gb|AEF03944.1| Holliday junction DNA helicase motor protein [Alteromonas sp. SN2]
          Length = 206

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+D  GV Y I+ P+ +   L  +G+   ++    +R+D   L
Sbjct: 1   MIGRIRGTLAEKQPPEILVDANGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R  F  L    GVG ++ + +LS ++A + + ++   +   +  +PGI  K 
Sbjct: 61  FGFADKMERGLFRELIKANGVGPKLGLTILSGMSAGQFLSAVQNADVSALVSLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELK +      V    +   + +      +  +     +A SALV LGY   QA
Sbjct: 121 AERLVVELKDRLAKFGKVQSIAIPPPSGDLLNTNTLVEVNDTREDAQSALVALGYKPAQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  + SV K+         +IR AL+A
Sbjct: 181 SKLIDSVYKEGME---SESLIREALKA 204


>gi|330828297|ref|YP_004391249.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas
           veronii B565]
 gi|328803433|gb|AEB48632.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas
           veronii B565]
          Length = 229

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VL++V GV Y +  P+     L +IG   T+     +R+D   L+
Sbjct: 27  IGRLRGIVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLLY 86

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R  F  L    GVG ++A+ +LS +TAT+ V S+  +    + ++PG+  K A
Sbjct: 87  GFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKTA 146

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     S      + V    +      P     A SALV LGY   QA+  
Sbjct: 147 ERLVVEMKDRLKGWVSHDLFSPAMVTLPASEPELRAPDVTEEAASALVALGYKPQQASQI 206

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K+  +      IIR +LR++
Sbjct: 207 VSKIAKEGMS---VEDIIRESLRSL 228


>gi|260598336|ref|YP_003210907.1| Holliday junction DNA helicase RuvA [Cronobacter turicensis z3032]
 gi|260217513|emb|CBA31691.1| Holliday junction ATP-dependent DNA helicase ruvA [Cronobacter
           turicensis z3032]
          Length = 203

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y I+ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLEAGGVGYEIHMPMTCFYELPETGKEAVVFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        ++      A++ALV+LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V + +   A    +IR ALRA
Sbjct: 181 VSKVAQPD---ASSETLIREALRA 201


>gi|262276112|ref|ZP_06053921.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886]
 gi|262219920|gb|EEY71236.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886]
          Length = 209

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 9/211 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++V GV Y +  P+     L ++G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEILLEVNGVGYEVSMPMSCFYELPEVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R  F  +    GVG ++ + +LS +TAT+ V+S+  ++   + +IPG+  K 
Sbjct: 61  YGFNTTVERALFREVIKANGVGPKLGLAILSGMTATQFVDSVEREDVSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAIS------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E++ +  +       +      +   N  +  + +       AISAL+ LGY  
Sbjct: 121 AERLVIEMRDRLKNWHAFDLFTPHADAAVRRANGTETVVAASTDPKDEAISALIALGYKA 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            QA   V  V     +      IIR ALR++
Sbjct: 181 AQAEKVVKQVA---VDGMKSEAIIRDALRSM 208


>gi|145297804|ref|YP_001140645.1| Holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166229628|sp|A4SJ25|RUVA_AERS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|142850576|gb|ABO88897.1| holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 204

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG   T+     +R+D   L
Sbjct: 1   MIGRLRGVVIEKQPPEVLLEVGGLGYEVQMPMSCFYDLPEIGKEVTIHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS +TAT+ V S+  +    + ++PG+  K 
Sbjct: 61  YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     S  +          +  +   P  +  A SALV LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWVSHDLFSPAEISLPARESVLRAPDSSEEAASALVALGYKPQQASQ 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K+  +      IIR +LR++
Sbjct: 181 IVSKIAKEGMS---VEDIIRESLRSL 203


>gi|284007614|emb|CBA73228.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 204

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL+++ GV Y ++ P+     L +IG    L  +  +R+D   L
Sbjct: 1   MIGRLRGTILEKQPPIVLLELNGVGYEVHMPMTCFYELPEIGQEVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAYQFVSAIEQEAIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L   + +Q    +    A   +       A+SAL++LGY    A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFKQSAIDLPGSSAAKQNSHDIEAEAVSALISLGYKPQDASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V        +   +IR ALRA
Sbjct: 181 MIGRVA---NGATNCEALIREALRA 202


>gi|254516709|ref|ZP_05128768.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3]
 gi|219675132|gb|EED31499.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3]
          Length = 203

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   +L+DV GV Y I  P+ TL  L  +GD  TL     +R+D   L
Sbjct: 1   MIGRISGTLLHKHPPEILVDVAGVGYEIQVPMTTLFQLPALGDAVTLLTHHAVREDAQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ DR+ F  L  V GVG ++A+ +LS + +     ++   +   +  +PG+  K 
Sbjct: 61  YGFVSERDRELFRHLIKVSGVGPKLALTILSGMDSDSFARAVQADDLTALVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +           ++      A          +A  ALV+LGY   +A   
Sbjct: 121 AERLLIEMRDRLSGW----LDKITDTGGGMARPIPASDKLSDAEEALVSLGYKPAEAARL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V     +I D  ++IRLALR+
Sbjct: 177 VARV--DNDDITDSEELIRLALRS 198


>gi|156933560|ref|YP_001437476.1| Holliday junction DNA helicase RuvA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166230549|sp|A7MEA2|RUVA_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|156531814|gb|ABU76640.1| hypothetical protein ESA_01380 [Cronobacter sakazakii ATCC BAA-894]
          Length = 203

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLEAGGVGYEVHMPMTCFYELPETGKEAVVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        ++      A++ALV+LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V + +   A    +IR ALRA
Sbjct: 181 VSKVAQAD---ASSETLIREALRA 201


>gi|301155728|emb|CBW15196.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 203

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +       +L+DVQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDQFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   +        S      + +    S A  AI+AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSADEAIAALIALGYKPTDAEKM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V K +       Q+IR AL+A
Sbjct: 181 VKKVAKAD---LSSEQLIREALKA 201


>gi|260912903|ref|ZP_05919388.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis
           ATCC 43325]
 gi|260632893|gb|EEX51059.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis
           ATCC 43325]
          Length = 204

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQGV Y +  P+ +   L +IG   +LF    +R+D   L
Sbjct: 1   MIGHLTGRLVEKQPPEILLDVQGVGYELLLPMTSFYNLPEIGQKTSLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E V +I  +    + +IPG+  K 
Sbjct: 61  FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   ++      +   +   +  + S  +    A+SALV LGY   +A  
Sbjct: 121 AERLLVELKGKFKDVTQGDFFIESKHLPDVKVSMQSSDAPNDEAVSALVALGYKPVEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K +       Q+IR AL+A
Sbjct: 181 MVKRITKPD---LSSEQLIREALKA 202


>gi|157962184|ref|YP_001502218.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC
           700345]
 gi|189045771|sp|A8H546|RUVA_SHEPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157847184|gb|ABV87683.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC
           700345]
          Length = 205

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VL+DV GV Y +  P+ +   L ++G    ++    +R+D   L
Sbjct: 1   MIGRIRGILIEKQAPEVLVDVSGVGYELQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL    GVG ++ + +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFVSKQERSLFRLLIKANGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +         + +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYKASEVVNTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV     +      +I+ AL+++
Sbjct: 181 KAVSSVY---TDGMSSETLIKSALKSM 204


>gi|260467057|ref|ZP_05813237.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum
           WSM2075]
 gi|259029166|gb|EEW30462.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum
           WSM2075]
          Length = 206

 Score =  248 bits (633), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 134/207 (64%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ L+D+ GV Y+ YC  RTL+ L   G+   LF+ET++R+D +RL
Sbjct: 1   MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R+WF LL  +V GVGA+VA+ +LS +T  +L  +I L++  ++++ PG+  K
Sbjct: 61  YGFQSQLEREWFRLLMNNVPGVGAKVALAILSTLTPADLANAIALRDIAMVSRAPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    K++      P+   +A+SALVNLGY +D A  
Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGL--KQELGDGVAPAPITDAVSALVNLGYSRDTAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD S++IR  L+ ++
Sbjct: 179 AVSAALKTAGEDADASKLIRFGLKELA 205


>gi|34499678|ref|NP_903893.1| Holliday junction DNA helicase RuvA [Chromobacterium violaceum ATCC
           12472]
 gi|44888390|sp|Q7NQB7|RUVA_CHRVO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34105529|gb|AAQ61883.1| holliday junction DNA helicase [Chromobacterium violaceum ATCC
           12472]
          Length = 197

 Score =  248 bits (633), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       V++DV GV Y +  P+ T   L  +G  CTLF    +R+D   L
Sbjct: 1   MIGRLSGKLIEKLPPQVVVDVNGVGYEVDVPMTTFYQLPALGQPCTLFTHLAVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +RQ F  L  V G+GA++A+ +LS +TA EL  ++  ++ K ++ +PGI  K 
Sbjct: 61  YGFASKEERQTFRQLIKVTGIGAKIALAILSGMTADELAIAVASEDIKRLSAVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK            +          + P    + ++AL+ LGY + +A  A
Sbjct: 121 AERLVLELRGKL-------ATGGNLTVPGGLPFAATPDEKSDIVNALLALGYNEKEAAAA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                K        S+ +RLAL+++
Sbjct: 174 ----TKSLPADVTVSEGVRLALKSL 194


>gi|304413290|ref|ZP_07394763.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
 gi|304284133|gb|EFL92526.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
          Length = 202

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y I  PI     L + G    +F +  +R++   L
Sbjct: 1   MIGRLRGIILEKQPPQVLLETHGVGYEIQLPISCFYQLPEAGQEAIIFTQFVVREEAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAPQFVHAVEQEEISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L+  +  + S      A + +  +    A+SAL+ LGY   +A+  
Sbjct: 121 AERLVVEMKDRIKGLNGDLFTN-STAAPLSASLLTTVNNEAEAVSALITLGYKPQEASRL 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +   E    D   +IR ALRA
Sbjct: 180 INKIATAEM---DCETLIREALRA 200


>gi|161936318|ref|YP_129329.2| Holliday junction DNA helicase RuvA [Photobacterium profundum SS9]
 gi|90135510|sp|Q6LT49|RUVA_PHOPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 206

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       VLIDV G+ Y +  P+     L ++G    +     +R+D   L
Sbjct: 1   MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+  ++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E++ +               +  +  +    S       A+SAL+ LGY   QA
Sbjct: 121 AERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARAEDEAVSALIALGYKALQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  V+K E +      IIR ALR++
Sbjct: 181 AKVVSQVVKPEMS---SENIIREALRSM 205


>gi|239995979|ref|ZP_04716503.1| Holliday junction DNA helicase motor protein [Alteromonas macleodii
           ATCC 27126]
          Length = 206

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+DV GV Y I+ P+ +   L  +G+   ++    +R+D   L
Sbjct: 1   MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R  F  L    GVG ++ + +LS ++A++ + S+  ++   +  +PGI  K 
Sbjct: 61  FGFADKMERGLFRELIKANGVGPKLGLAILSGMSASQFLASVQNEDVSALVSLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELK +           +   + +      I ++      A SAL+ LGY   QA
Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSTNTIVAVNDAREEAQSALIALGYKPAQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  V SV K+         +IR +L+A
Sbjct: 181 SKLVDSVYKEGME---SEALIRESLKA 204


>gi|326795234|ref|YP_004313054.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas
           mediterranea MMB-1]
 gi|326545998|gb|ADZ91218.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas
           mediterranea MMB-1]
          Length = 199

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       +L+DV G+ Y +Y  + T+  L  IG+   L     +++D   L
Sbjct: 1   MISRIVGTLIEKMPPELLVDVNGIGYEVYASMTTIYDLASIGETVVLHTHLQVKEDSHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F +L  V G+G ++A+ +LS ++ +EL+E++   N   + +IPG+  K 
Sbjct: 61  YGFHSKDERAVFRVLIKVNGIGPKMALAILSSMSTSELIENVQESNVDALVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L    +QD+    K    + + P     A +ALV LGY   +A+ A
Sbjct: 121 AERLIIELRDK---LGQAAKQDLFSTPKVLKQVQADP--RQEAEAALVALGYKPQEASKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V +   + +D   II+ AL+ +
Sbjct: 176 VAKVPQ---DGSDSETIIKAALKGM 197


>gi|152979457|ref|YP_001345086.1| Holliday junction DNA helicase motor protein [Actinobacillus
           succinogenes 130Z]
 gi|171704337|sp|A6VQA4|RUVA_ACTSZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150841180|gb|ABR75151.1| Holliday junction DNA helicase RuvA [Actinobacillus succinogenes
           130Z]
          Length = 204

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DVQG+ Y +  P+ +   L   G  CT+F    +R+D   L
Sbjct: 1   MIGRLQGKLIEKQPPEILLDVQGIGYELLLPMTSFYNLPDTGQECTVFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFSTKTDRTLFRELIKTNGVGPKLALAILSAMSVHEFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   L       +   +           +    A++ALV LGY   +A  
Sbjct: 121 AERLLVELKGKFKGLRQPDFFVESKHITVPDIVSAEKETPNDEAVAALVALGYKPPEAAK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V   +       Q+IR AL+A
Sbjct: 181 MVKKVANGD---LTSEQLIREALKA 202


>gi|145632564|ref|ZP_01788298.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 3655]
 gi|229845014|ref|ZP_04465151.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 6P18H1]
 gi|144986759|gb|EDJ93311.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 3655]
 gi|229812148|gb|EEP47840.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 6P18H1]
          Length = 204

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +   S+ + +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPSVPSIEPSVENSSDEAISALIALGYKPSEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V  V K E       Q+IR AL+
Sbjct: 181 MVKRVAKPE---LTSEQVIREALK 201


>gi|325579043|ref|ZP_08148999.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159278|gb|EGC71412.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 203

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DVQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLTGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   +        S      + +    S A  A++ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSADEAVAALVALGYKPTDAEKM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V K +       Q+IR AL+
Sbjct: 181 VKKVAKAD---LTSEQLIREALK 200


>gi|229470526|sp|B4RTT9|RUVA_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 206

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+DV GV Y I+ P+ +   L  +G+   ++    +R+D   L
Sbjct: 1   MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R  F  L    GVG ++ + +LS ++A + + S+  ++   +A +PGI  K 
Sbjct: 61  FGFADKMERGLFRELIKANGVGPKLGLAILSGMSAGQFLASVQNEDVSALASLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELK +           +   + +      I  +      A SAL+ LGY   QA
Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSPNTIVEVNDAREEAQSALIALGYKPAQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  V SV  +         +IR AL+A
Sbjct: 181 SKLVESVYSEGME---SEALIREALKA 204


>gi|238788520|ref|ZP_04632313.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC
           33641]
 gi|238723433|gb|EEQ15080.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC
           33641]
          Length = 194

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 3/194 (1%)

Query: 11  GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70
                 VL++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R 
Sbjct: 2   EKQPPLVLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERA 61

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K 
Sbjct: 62  LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190
           +   L+  +  +   +    A           A+SALV LGY   +A+  V  + K    
Sbjct: 122 RFKGLNGDLFNNTGDIQLPSASQTPDADIEAEAVSALVALGYKPQEASRLVSKIAK---P 178

Query: 191 IADDSQIIRLALRA 204
            AD   +IR ALRA
Sbjct: 179 GADCETLIRDALRA 192


>gi|46912737|emb|CAG19527.1| Putative holliday junction DNA helicase RuvA [Photobacterium
           profundum SS9]
          Length = 228

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 6/207 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG++ G I       VLIDV G+ Y +  P+     L ++G    +     +R+D   L+
Sbjct: 24  IGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLLY 83

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R+ F  +    GVG ++ + +LS +TA++ V S+  ++   + +IPG+  K A
Sbjct: 84  GFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKTA 143

Query: 122 SRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            R++ E++ +               +  +  +    S       A+SAL+ LGY   QA 
Sbjct: 144 ERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARAEDEAVSALIALGYKALQAA 203

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V+K E +      IIR ALR++
Sbjct: 204 KVVSQVVKPEMS---SENIIREALRSM 227


>gi|302671008|ref|YP_003830968.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus
           B316]
 gi|302395481|gb|ADL34386.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus
           B316]
          Length = 207

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E L +   +IDV G+ Y +     T+  +  IG+   L+  T++++D   L
Sbjct: 1   MIAYVNGILENLEDGNAVIDVNGIGYNVNISGSTMDRMPGIGEMVKLYTYTNVKEDAFTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  +   F LL +V G+G +  + +LS +T  +L  +I+  +SK +++ PGI  K 
Sbjct: 61  FGFLSRDELNLFKLLITVNGIGPKGGLAILSVMTPDDLRFAILAGDSKSLSKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+ K       +    S    +   +    S    A++ALV LGY    A  A
Sbjct: 121 AERITLELRDKLKLSEDELLGGTSASAADIGSMDGDNSARDEAVAALVALGYNSSDAMKA 180

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           V  VL   K   +D++ +++LAL+ +
Sbjct: 181 VRKVLASSKEAGEDTEILLKLALKEM 206


>gi|145636553|ref|ZP_01792221.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittHH]
 gi|145270378|gb|EDK10313.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittHH]
          Length = 204

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      + +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIRSVPSIEPHTENSSDEAISALIALGYKPSEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|157375170|ref|YP_001473770.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3]
 gi|189045772|sp|A8FUW9|RUVA_SHESH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157317544|gb|ABV36642.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3]
          Length = 205

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 111/207 (53%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQG+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGLLVEKQAPEILLEVQGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +         + +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYTPAPVINTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +V +   +  D   +I+ +L+++
Sbjct: 181 KAVSAVYQ---DGMDSETLIKSSLKSM 204


>gi|254482531|ref|ZP_05095770.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2148]
 gi|214037222|gb|EEB77890.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2148]
          Length = 204

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+GN+       +L++V GV Y +  P+ TL  L ++G   +L     +R+D   L
Sbjct: 1   MIGRIRGNLVHKQPPVILVEVGGVGYELQVPMTTLFQLPELGAEVSLVTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + DR  F  L  V GVG ++A+ +LS + +      +   +   +  +PG+  K 
Sbjct: 61  YGFAQERDRALFRQLIKVSGVGPKLALTILSGMDSASFARCVQRDDISSLVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K       +  ++      Q+          +A  AL+ LGY   +A   
Sbjct: 121 AERLLVEMRDKLKDWLGQLDGELPSSGPAQSAAPV--DRVADAEGALIALGYKPAEAARM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V   + +I +   +IR AL+++
Sbjct: 179 VAAV--NDDSIENSEDLIRRALKSM 201


>gi|90417110|ref|ZP_01225038.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2207]
 gi|90331126|gb|EAS46382.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2207]
          Length = 199

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LIDVQGV Y +   + T   +  +G+  TL     +R+D  +L
Sbjct: 1   MIGRLQGKVIEKQAPDLLIDVQGVGYEVLVSLNTFFGVPGVGEITTLHTHFVVREDVQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  V GVG ++A+ +LS ++A +    +   +   + ++PG+  K 
Sbjct: 61  YGFGTQSERQLFRHLIKVNGVGPKMALAILSGMSANDFAICVHNNDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K   +      D +          + P  +  A SAL+ LGY    A   
Sbjct: 121 AERLLIEMRDKIGDM------DATAAGSATGAQEAKPDISQEAESALIALGYKPADAAKI 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +  V  +  ++ D  ++IRLAL+++  
Sbjct: 175 ISRVATE--SVNDAGELIRLALKSMGS 199


>gi|54294187|ref|YP_126602.1| holliday junction DNA helicase [Legionella pneumophila str. Lens]
 gi|54297206|ref|YP_123575.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str.
           Paris]
 gi|148358830|ref|YP_001250037.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str.
           Corby]
 gi|296106875|ref|YP_003618575.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99
           Alcoy]
 gi|81368758|sp|Q5WX47|RUVA_LEGPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81370703|sp|Q5X5R9|RUVA_LEGPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230562|sp|A5IBE1|RUVA_LEGPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|53750991|emb|CAH12402.1| holliday junction DNA helicase [Legionella pneumophila str. Paris]
 gi|53754019|emb|CAH15490.1| holliday junction DNA helicase [Legionella pneumophila str. Lens]
 gi|148280603|gb|ABQ54691.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str.
           Corby]
 gi|295648776|gb|ADG24623.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610000|emb|CBW99532.1| holliday junction DNA helicase [Legionella pneumophila 130b]
          Length = 199

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G I        +++DV GV Y +   + T   +        L + T +R+D + 
Sbjct: 1   MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPIGLHIHTIVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVG ++AM VLS I+  E ++ I  +N+ ++ ++PGI  K
Sbjct: 61  LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++         V                       AISAL  LGY   +A  
Sbjct: 121 TAERLVVEMRDSIKQFDGSVSDTF-------QKQAGSTHSQQEAISALEALGYKPQEAWK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            V  +    K+     Q+IR AL+ +S 
Sbjct: 174 VVNKIDNGNKS---CEQLIREALQILSS 198


>gi|92118982|ref|YP_578711.1| Holliday junction DNA helicase RuvA [Nitrobacter hamburgensis X14]
 gi|91801876|gb|ABE64251.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter
           hamburgensis X14]
          Length = 206

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G    L +ET++R+DQI+L
Sbjct: 2   MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGAAAVLSIETYVREDQIKL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+WF LLQ+VQGVGARVA+ VL  ++  +L  +I L++   +A+ PG+  K+
Sbjct: 62  YGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLANAIALRDKASVARTPGVGPKV 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + ++V    +             P    +AISALVNLGYGQ QAT A
Sbjct: 122 AERIVTELKDKAPAFANVDPAVVHLAG--AIDDARAPRPVRDAISALVNLGYGQPQATAA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    +   + A+ +Q+IRL L+ ++
Sbjct: 180 IAVASRSAGDDAETAQLIRLGLKELA 205


>gi|304393330|ref|ZP_07375258.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130]
 gi|303294337|gb|EFL88709.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130]
          Length = 205

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 131/207 (63%), Gaps = 2/207 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DVQGV Y ++C  RT+  L   G+   L +ETH+R+ +I+L
Sbjct: 1   MIGKLKGTVDSFGEDWVILDVQGVGYQVHCSTRTMGTLPAAGEAAQLAIETHVRETEIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +DL+R WF LLQ+VQGVGARVA+ +L  +T  E+  +I LQ+   +A+ PG+  K+
Sbjct: 61  YGFTADLERNWFRLLQNVQGVGARVALAILGTLTPGEIASAIALQDKATVARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +LS      +    +++    +  S   +A+SAL NLGY   QA+ A
Sbjct: 121 AQRIVAELKDKAPALSGDATGTIGL--QQELGAGAASSAVQDAVSALTNLGYSSQQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V   L K  + A  + +IR+ L+ +S 
Sbjct: 179 VKLALDKAGDDAPSATLIRMGLKELSS 205


>gi|254504698|ref|ZP_05116849.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11]
 gi|222440769|gb|EEE47448.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11]
          Length = 205

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQALPRAGEAAVLFIETIVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R+WF +L +VQGVGA+VA+G+L  + A+E+  +I L +   I++ PG+  ++
Sbjct: 61  YGFAAEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKATISRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK KA  L+S+ Q  ++       ++ + P     A+SAL NLGYGQ QA+ A
Sbjct: 121 AERILSELKDKAPGLASIDQDTIAVSQTVADNVAARP--VAEAVSALTNLGYGQPQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   ++     A    +IRL L+ ++
Sbjct: 179 VAKAMQSAGEDATTETLIRLGLKELA 204


>gi|119774975|ref|YP_927715.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B]
 gi|166200259|sp|A1S6N9|RUVA_SHEAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119767475|gb|ABM00046.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B]
          Length = 205

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +   +   VLIDV GV Y +  P+ +   L   G    ++    +R+D   L
Sbjct: 1   MIGRLKGILVEKHAPEVLIDVGGVGYELQMPLTSFYELPLPGAEVIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F LL    GVG ++A+ +LS +TA E +  +   +   + ++PG+  K 
Sbjct: 61  YGFIHKEERSLFRLLIKANGVGPKLALTILSGMTAKEFIGCLERDDIATLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S+  +    +           +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASMGAEREFVLKSNFTPAPVAATVEEDAIAALLSLGYKPQQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV S  ++     D  Q+I+ AL+++
Sbjct: 181 KAVSSAFQEGM---DPEQLIKAALKSM 204


>gi|212635161|ref|YP_002311686.1| Holliday junction DNA helicase RuvA [Shewanella piezotolerans WP3]
 gi|226725447|sp|B8CNY0|RUVA_SHEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212556645|gb|ACJ29099.1| DNA recombination protein, RuvA [Shewanella piezotolerans WP3]
          Length = 205

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VLIDV GV Y I  P+ +   L +IG    +F    +R+D   L
Sbjct: 1   MIGRIRGLLVEKQAPEVLIDVSGVGYEIQMPLTSFYELPEIGLEAVVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL    GVG ++A+ +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFISKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +           +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPVVANTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +V     +  D   +I+ AL+++
Sbjct: 181 KAVSAVY---VDGIDSESLIKSALKSM 204


>gi|240949538|ref|ZP_04753878.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305]
 gi|240296111|gb|EER46772.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305]
          Length = 200

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEETTIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   LS   Q D+      +  + S    +  A  AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMASSVEPSDEARDALIALGYKPADAEKM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V       A   Q+IR AL+
Sbjct: 178 IKKV---NLVGATSEQLIREALK 197


>gi|46143844|ref|ZP_00133975.2| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207771|ref|YP_001052996.1| Holliday junction DNA helicase RuvA [Actinobacillus
           pleuropneumoniae L20]
 gi|303252521|ref|ZP_07338684.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247270|ref|ZP_07529319.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249498|ref|ZP_07531486.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307256311|ref|ZP_07538094.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260744|ref|ZP_07542433.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166229626|sp|A3MZ05|RUVA_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126096563|gb|ABN73391.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302648489|gb|EFL78682.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856243|gb|EFM88397.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858491|gb|EFM90559.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306865137|gb|EFM97037.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869583|gb|EFN01371.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 201

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++     +   V  E          A  A  ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSV--ETIVATHSHDPADEARDALVALGYKLADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    K  A   Q+IR AL+A
Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199


>gi|226329884|ref|ZP_03805402.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198]
 gi|225200679|gb|EEG83033.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198]
          Length = 206

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG+I+G I       VLI+   GV Y I  P+     L  IG    ++ +  +R+D   
Sbjct: 1   MIGRIRGIILEKQPPVVLIEAGSGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  ++   + ++PG+  K
Sbjct: 61  LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQ--DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ E+K +   L+  + +  D+       +           A +AL+ LGY   +A
Sbjct: 121 TAERLVVEMKDRFKGLNGDLFENSDIELPESTPSKAPKAADIEAEASAALIALGYKPQEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
              +  V K      D   +IR ALRA
Sbjct: 181 AKMISKVAKL---GTDSETLIREALRA 204


>gi|114321641|ref|YP_743324.1| Holliday junction DNA helicase RuvA [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122310889|sp|Q0A5Q3|RUVA_ALHEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114228035|gb|ABI57834.1| Holliday junction DNA helicase subunit RuvA [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 208

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   +L+DV GV Y +  P+ T   L       TL+    +R D   L
Sbjct: 1   MIGRLHGTVAERHPPALLLDVGGVGYELEAPMSTFYALPAGDQAVTLWTHLAVRDDGQAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F +L  + GVG ++A+ +LS + A  L   I  ++   + ++PG+  K 
Sbjct: 61  YGFASRAERDLFRVLIRISGVGPKLALALLSGMNAEGLQRCIEREDVATLTRLPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---VNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ EL+ +   L       +       ++            +A+SALV LGY   +A
Sbjct: 121 AQRLIVELRDRLDGLLPAASGGVPARTGSGEQLDAPAGPQGSREDAVSALVALGYKPAEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
              V +V     N     ++IR AL+A
Sbjct: 181 GRLVNAV--PGANDLPSEELIRRALQA 205


>gi|52841519|ref|YP_095318.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81377601|sp|Q5ZW00|RUVA_LEGPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52628630|gb|AAU27371.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 199

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G I        +++DV GV Y +   + T   +        L + T +R+D + 
Sbjct: 1   MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPVGLHIHTIVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVG ++AM VLS I+  E ++ I  +N+ ++ ++PGI  K
Sbjct: 61  LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++         V                       AISAL  LGY   +A  
Sbjct: 121 TAERLVVEMRDSIKQFDGSVSDTF-------QKQAGSTHSQQEAISALEALGYKPQEAWK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            +  +    K+     Q+IR AL+ +S 
Sbjct: 174 VMNKIDNGNKS---CEQLIREALQILSS 198


>gi|225410073|ref|ZP_03761262.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme
           DSM 15981]
 gi|225042421|gb|EEG52667.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme
           DSM 15981]
          Length = 207

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 4/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  + ED ++++  GV   I+ P+  L  L  IG   T++    +R+D + L
Sbjct: 1   MISYIKGPLTAIEEDVIVVEAGGVGMGIHVPLSVLDRLPGIGREVTVYTYFQVREDAMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  DR  F  L  V GVG + A+G+LS +T  +L  +I+  ++K I++ PGI  K 
Sbjct: 61  YGFLNRQDRDMFRQLIGVNGVGPKAALGILSTMTPDDLRMAIVTGDAKAISRAPGIGPKT 120

Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ +LK K     +   +               SM   A  A+ ALV LGY   +A 
Sbjct: 121 AQRLILDLKDKISMEEMLGNLALPCDGGASAALGTASMGEAAKEAVQALVALGYSNMEAN 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV  V   E   A    +++ +LR +S
Sbjct: 181 KAVKQVEVTETMTA--EDVLKASLRYLS 206


>gi|307245098|ref|ZP_07527191.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254053|ref|ZP_07535900.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258509|ref|ZP_07540246.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853987|gb|EFM86199.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862978|gb|EFM94925.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867413|gb|EFM99264.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 201

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++     +   V  E          A  A  ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSV--ETIVATHSHDPADEARDALVALGYKLADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    K  A   Q+IR AL+A
Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199


>gi|149375111|ref|ZP_01892883.1| Holliday junction DNA helicase motor protein [Marinobacter algicola
           DG893]
 gi|149360475|gb|EDM48927.1| Holliday junction DNA helicase motor protein [Marinobacter algicola
           DG893]
          Length = 210

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        L++  G+ Y +  P  T   L + G    L     +R+D   L
Sbjct: 1   MIGRIRGILIEKSPAQALVECAGLGYEVDIPYTTFFNLPETGAELVLHTHFVVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S LDR  F LL  V GVG ++A G+LS + A + +  +  +++  + ++PG+  K 
Sbjct: 61  YGFSSRLDRDLFRLLIKVNGVGPKLAAGILSGLDANQFIRCVEARDANALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+  +   L               +   A + +       A +AL+ LGY   +
Sbjct: 121 AERLLIEMTDRIGQLEGQFIPASPNATVTSDSANAGVVAGHDPREEAEAALIALGYKPQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ A+  V ++  +     ++IRLALRA+
Sbjct: 181 ASKAISKVAEESMS---SQELIRLALRAM 206


>gi|298370450|ref|ZP_06981766.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281910|gb|EFI23399.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 193

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +        +IDV GV Y +   ++T   L   G+   L+ +  +R+D   L
Sbjct: 1   MIGRLKGILVEKNPPQAVIDVNGVGYEVDVSMQTFYRLPATGEAVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS ++A EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +          S V+   A + +      + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLV----------SAVSDGPAALSAAADGTDDIVSTLLALGYSEREAKAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    K      D  + +RLAL+ +
Sbjct: 171 V----KGLPKGTDVGEGVRLALKNL 191


>gi|293390518|ref|ZP_06634852.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951052|gb|EFE01171.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 204

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQG+ Y +  P+ +   L ++G    LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTRLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   + ++        + +    I +    +  A++ALV LGY    A  
Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEPSNEAVAALVALGYKPLDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       QIIR AL+A
Sbjct: 181 MVKKVSKPE---LSSEQIIREALKA 202


>gi|119504258|ref|ZP_01626338.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2080]
 gi|119459766|gb|EAW40861.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2080]
          Length = 209

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 2/204 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +       +L+DV G+ Y +  P+ TL  L ++G+  TL     +R+D   L
Sbjct: 1   MIGYLRGRLIVKRPPELLVDVGGIGYELQVPMTTLFDLPEVGEEVTLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + DR+ F  L  V GVG ++A+ +LS + A    + +   +   +  +PG+  K 
Sbjct: 61  YGFREEADRRLFRELIKVSGVGPKLALALLSGLDARAFAQCLQRDDVATLVALPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ KA      +   +     +   +         A  ALV LGY   +A+  
Sbjct: 121 AERLLVEMRDKAGKWLEELSPAIPGTQGQFVSVAPAMDSRTEAEQALVALGYKLPEASRL 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +V   +++I    ++IR AL+A
Sbjct: 181 VAAV--DDESIESSEELIRRALKA 202


>gi|254281679|ref|ZP_04956647.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B]
 gi|219677882|gb|EED34231.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B]
          Length = 207

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +   +   +++DV GV Y I  P+ TL  L  IG   +L     +R+D  +L
Sbjct: 1   MIGRIRGILAAKHPPEIVVDVGGVGYEIQVPMTTLFQLPDIGTEVSLVTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S++DR+ F  L  V GVG R+A+ +LS + A E    +   +   +  +PG+  K 
Sbjct: 61  FGFVSEVDRRLFRELIKVSGVGPRLALTLLSGMDAREFSRCLQRDDVASLVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ KA      +  +M+      A   +       A  ALV LGY    A+  
Sbjct: 121 AERLLVEMRDKAGKWLGELSPEMATTVGV-APGPAPDDAREEAEQALVALGYKLADASRL 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V SV   + + A   Q+IR AL+A
Sbjct: 180 VASV---DDSGASSEQLIRRALQA 200


>gi|251793066|ref|YP_003007792.1| Holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534459|gb|ACS97705.1| holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus
           NJ8700]
          Length = 204

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQGV Y +  P+ +   L ++G   +LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYNLPEVGKQTSLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPGI  K 
Sbjct: 61  FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   + +         +    A   +    +  A++AL+ LGY    A  
Sbjct: 121 AERLLVELKGKFKEVKTHDFFVQGDHLPSVNAETVATIEPSNEAVAALIALGYKPLDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKKVSKPE---LSSEQLIREALKA 202


>gi|297539687|ref|YP_003675456.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301]
 gi|297259034|gb|ADI30879.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301]
          Length = 192

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       VLID  GV Y    P+ T   L  IG+   +     +R+D   L
Sbjct: 1   MIGRLNGILLEKTPPLVLIDCNGVGYECEVPMSTFYNLPAIGEKVVMLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R  F  L  V G+GA+ A+ +LS ++  +LV+++ +Q++ ++ ++PG+  K 
Sbjct: 61  YGFGSDQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVAMQDTAMLTRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K            +      ++     S + + ++AL++LGY + +A  A
Sbjct: 121 AERLLLELKDKF-----------TVAGLSPSNSNQPKSASSDVLNALISLGYNEREALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    K     A  ++ I+LAL+++S
Sbjct: 170 V----KLLPADATVAEGIKLALKSLS 191


>gi|257465001|ref|ZP_05629372.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202]
 gi|257450661|gb|EEV24704.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202]
          Length = 200

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEDTTIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRMLFRELIKTNGVGPKLALAILSAMSVSQFASAVENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   LS   Q D+      +  + S    +  A  AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMTSSAEPSDEARDALIALGYKPADAEKM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V       A   Q+IR AL+
Sbjct: 178 IKKV---NLVGATSEQLIREALK 197


>gi|190149554|ref|YP_001968079.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249558|ref|ZP_07335765.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251815|ref|ZP_07533717.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307262875|ref|ZP_07544499.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470525|sp|B3H0C5|RUVA_ACTP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189914685|gb|ACE60937.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651632|gb|EFL81781.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860722|gb|EFM92733.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306871780|gb|EFN03500.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 201

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++     +   V  E          A  A  ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSV--ETIVATHSHDPADEARDALVALGYKLADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    K  A   Q+IR AL+A
Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199


>gi|118588334|ref|ZP_01545743.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM
           12614]
 gi|118439040|gb|EAV45672.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM
           12614]
          Length = 205

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQGLPRPGEAAVLFIETIVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+WF +L +VQGVGA+VA+G+L  + A+E+  +I L +  VI++ PG+  ++
Sbjct: 61  YGFGIEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKAVISRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK KA  L++V Q  ++       ++ + P     A+SAL NLGY Q QA+ A
Sbjct: 121 AERIISELKDKAPGLATVDQGTIAVSQTIADNVAARP--VAEAVSALTNLGYAQAQASGA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L+     A    +IRL L+ ++
Sbjct: 179 VAKALQSAGEDATTETLIRLGLKELA 204


>gi|52306819|gb|AAU37319.1| RuvA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 215

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV G+ Y +  P+ +   L +IG    LF    +R+D   L
Sbjct: 12  MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 71

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 72  FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 131

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +       + S V        S    A  A++AL+ LGY    A  
Sbjct: 132 AERLLVELKGKFKGIKQPDFFVESSHVGAVDPVTTSPEVPAEEAVAALMALGYKASDAEK 191

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K         Q+IR AL+A
Sbjct: 192 MVKRIAKPH---LTSEQLIREALKA 213


>gi|113460415|ref|YP_718477.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 129PT]
 gi|170717663|ref|YP_001783495.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336]
 gi|123131938|sp|Q0I1M4|RUVA_HAES1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045755|sp|B0UVK3|RUVA_HAES2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|112822458|gb|ABI24547.1| Holliday junction DNA helicase subunit RuvA [Haemophilus somnus
           129PT]
 gi|168825792|gb|ACA31163.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336]
          Length = 204

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DVQGV Y +  P+ +   L ++G   TLF    +R+D   L
Sbjct: 1   MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E V +I  +    + +IPG+  K 
Sbjct: 61  FGFSHKQDRSLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   L         S +   +            A+SAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKLDQSLQLDEAVSALIALGYKPIEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  VLK +       Q+IR AL+A
Sbjct: 181 MVKKVLKAD---LTSEQLIREALKA 202


>gi|261868502|ref|YP_003256424.1| Holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413834|gb|ACX83205.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 204

 Score =  243 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQG+ Y +  P+ +   L ++G    LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTCLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   + ++        + +    I +    +  A++ALV LGY    A  
Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEPSNEAVAALVALGYKPLDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       QIIR AL+A
Sbjct: 181 MVKKVSKPE---LSSEQIIREALKA 202


>gi|170726918|ref|YP_001760944.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908]
 gi|229560127|sp|B1KGY0|RUVA_SHEWM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169812265|gb|ACA86849.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908]
          Length = 205

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++V G+ Y +  P+ +   L  +     ++    +R+D   L
Sbjct: 1   MIGRLRGVLVEKQAPEILLEVAGLGYEVQMPLTSFYELPDLNQEAQIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++ + +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +         + +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLLETSAGSEREFMLKSNYTPAPVVNTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+  +      +I+ +L+++
Sbjct: 181 KAVSAAFKEGMS---SEDLIKSSLKSM 204


>gi|307545151|ref|YP_003897630.1| Holliday junction DNA helicase motor protein [Halomonas elongata
           DSM 2581]
 gi|307217175|emb|CBV42445.1| Holliday junction DNA helicase motor protein [Halomonas elongata
           DSM 2581]
          Length = 203

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +   + TL  L   G+  +L+    +R D   L
Sbjct: 1   MIGRLRGTLLEKQPPWLVVDVAGVGYELEASMTTLVALPGCGEDVSLYTHLSVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R  F  L  V G+G ++A+ +LS +     +  ++  + K + ++PG+  K 
Sbjct: 61  YGFAREQERSLFRALIKVNGIGPKLALAILSGMDEDAFIRCVMDDDIKALTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +        Q          A   S      +A +ALV+LGY   +AT  
Sbjct: 121 AERLVIEMRDRFPHWQDSTQVSAGDAGM-GATTPSPKDPLADAEAALVSLGYKPSEATRM 179

Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206
               L   ++      +I+ AL R ++
Sbjct: 180 ----LSGLEDEGSTEAMIKAALARRMA 202


>gi|153875446|ref|ZP_02003246.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp.
           PS]
 gi|152068090|gb|EDN66754.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp.
           PS]
          Length = 203

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       +++DVQGV Y ++ P+ T   L +I    +L     +R+D   L
Sbjct: 1   MISRLRGLLIEKQPPLLVVDVQGVGYEVFAPMSTFYNLPEINAEISLLTHLSIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F  L  V G+G ++A+ +LS +  +  V+ +   ++  + +IPG+  K+
Sbjct: 61  YGFLNESERGLFRDLIRVSGIGPKLALSILSSMELSMFVQCVNNNDTARLIRIPGVGKKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +  + ++      S           + +   +AISAL+ LGY    AT  
Sbjct: 121 AERLVVEMRDRLKNWNTTNNTAPSPTTTSSTLTLGIATPIEDAISALIALGYKPQDATRW 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +V ++         +IR AL++
Sbjct: 181 VQAVAEE---GLTSEVLIRRALQS 201


>gi|296313720|ref|ZP_06863661.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC
           43768]
 gi|296839643|gb|EFH23581.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC
           43768]
          Length = 194

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V        S      + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAPSENDETNDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|152996211|ref|YP_001341046.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1]
 gi|189045756|sp|A6VXD2|RUVA_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150837135|gb|ABR71111.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1]
          Length = 200

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +++DV G+ Y +   + T+  L +IG   TLF    +++D   L
Sbjct: 1   MIGRIVGTLIEKTPPELMVDVNGIGYEVSASMTTIYDLPQIGGQVTLFTHLLVKEDSHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F +L  V G+G ++A+ +LS +++ EL+ ++   +   + +IPG+  K 
Sbjct: 61  YGFIDKNERALFRVLIKVNGIGPKMALAILSSMSSEELITNVQESDVTALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L    + D+         + + P     A +AL++LGY   +A  A
Sbjct: 121 AERLIIELRDK---LGQAAKTDLFSAPAVLRQVQADP--RQEAEAALISLGYKPQEAAKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V     + A+   +I+ AL+ +
Sbjct: 176 IAGVP---VDAANSEDVIKAALKGM 197


>gi|149910565|ref|ZP_01899204.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36]
 gi|149806408|gb|EDM66381.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36]
          Length = 206

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y I  P+     LG +     ++    +R+D   L
Sbjct: 1   MIGRLRGTLLEKQPPEILLDVNGVGYEIKLPMSCFYELGDVDKEVIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R  F  L  V GVG ++ + +LS +TA +    +   +   + ++PG+  K 
Sbjct: 61  YGFNNKMERLMFRELIKVNGVGPKLGLAILSGMTANQFAHCVEHDDINSLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E++ +  +  +  +    +   + Q +  +  +    A  AL+ LGY   Q   
Sbjct: 121 AERLLVEMRDRLKNWVTQDLFTPEADKAQLQGYGNTASNAIEEAEEALIGLGYKPAQVAK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V +   +     +IIRL+LRA
Sbjct: 181 MIKQVAQPSMS---CEEIIRLSLRA 202


>gi|88800180|ref|ZP_01115748.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297]
 gi|88777026|gb|EAR08233.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297]
          Length = 201

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+DV G+ Y I CP+ T+  L   G+  TL     +R+D   L
Sbjct: 1   MIGRIQGTLLENKAPELLVDVHGLGYEIQCPLSTIFALPATGEIVTLHTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG ++A+ +LS +     ++SI  Q+   + +IPG+  K 
Sbjct: 61  YGFATQKERTLFRTLIKISGVGPKLALAILSGMETNRFIQSIQDQDPGALVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K K   L S   + ++ + +      S      +A  AL+ LGY   QA+ A
Sbjct: 121 AERLIVEMKDKLAQLGSQGAELITPM-EALVEKNSRTDALQDAEGALIALGYKPTQASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V     +      IIR AL+A+
Sbjct: 180 VSNVAA---DGMSSEDIIRAALKAM 201


>gi|261378519|ref|ZP_05983092.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685]
 gi|269145069|gb|EEZ71487.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685]
          Length = 194

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   +F +  +R+D   L
Sbjct: 1   MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFYNLPPLGETVQVFTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK I            V        S      + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLI---------THTVTDGLFATPSENDETNDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +        D  + +RLAL+ +
Sbjct: 172 VKGI----PKGTDVGEGVRLALKNL 192


>gi|121998991|ref|YP_001003778.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1]
 gi|166230558|sp|A1WZ64|RUVA_HALHL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121590396|gb|ABM62976.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1]
          Length = 204

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       ++++  G+ Y +  P+ T+  L + G    L     +R+D   L
Sbjct: 1   MIARLRGTLLEKRPPTLVVEANGLGYEVEAPLSTIEALPETGREVILHTHLSVREDGQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++ + +LS +   ELV  +   + K + Q+PGI  K 
Sbjct: 61  FGFRTRAERDLFRRLIRVSGVGPKLGLALLSGVDGEELVRCVRDDDPKRLTQVPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   L  V     +       H          AI  LV LGY   +A   
Sbjct: 121 AERLIVELRDR---LDGVGGGSTAAPAAGADHPTGENDPVSEAIEGLVALGYKPPEAARM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
             +  + E        IIR AL+ 
Sbjct: 178 ARNAAEPELG---CEAIIRRALQR 198


>gi|311694932|gb|ADP97805.1| Holliday junction ATP-dependent DNA helicase RuvA [marine bacterium
           HP15]
          Length = 209

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        L++  G+ Y +  P  T   L + GD  TL     +R+D   L
Sbjct: 1   MIGRIRGILVEKAPGQALVECAGLGYEVDIPYTTFFHLPETGDEVTLHTHFAVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S LDR  F LL  V GVG ++A+G+LS + A + +  +  ++S  + ++PG+  K 
Sbjct: 61  YGFASSLDRDLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVENRDSASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+  +   L         +               P     A +AL+ LGY   +
Sbjct: 121 AERLLIEMADRIGQLEGQFVPTSPEATGVGQPGGQGPAGGPVATEEAEAALIALGYKPQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  A+  V ++  +      +IRLALR +
Sbjct: 181 AAKAISKVAEEGMS---SETLIRLALRNM 206


>gi|71279553|ref|YP_268842.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H]
 gi|90134812|sp|Q483C5|RUVA_COLP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71145293|gb|AAZ25766.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H]
          Length = 211

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 112/213 (52%), Gaps = 11/213 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+  GV Y +  P+ ++  L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGMLVEKNSPEILIECAGVGYEVTMPMTSIYALPELEQQATIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R+ F LL  V GVG ++A+ +LS ++A + V  +   +   I +IPG+  K 
Sbjct: 61  YGFANKVERKLFRLLIKVNGVGPKLALAILSNMSADQFVSCVRHDDISAIVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAI----NAISALVNLGY 172
           A R++ E++ +     +    +V  D     +  A +    +F      +AI+AL++LGY
Sbjct: 121 AERLLIEMRDRLKDWQAQQIHLVSDDGVIPEQLSAELSQETTFVNDNKGDAINALLSLGY 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            Q QA  AV SV  +  +      IIR AL+++
Sbjct: 181 KQVQADKAVKSVYNRGMS---SENIIRDALKSM 210


>gi|161510997|ref|YP_087904.2| Holliday junction DNA helicase motor protein [Mannheimia
           succiniciproducens MBEL55E]
 gi|88941980|sp|Q65UP1|RUVA_MANSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 204

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV G+ Y +  P+ +   L +IG    LF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +       + S V        S    A  A++AL+ LGY    A  
Sbjct: 121 AERLLVELKGKFKGIKQPDFFVESSHVGAVDPVTTSPEVPAEEAVAALMALGYKASDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K         Q+IR AL+A
Sbjct: 181 MVKRIAKPH---LTSEQLIREALKA 202


>gi|86574402|gb|ABD08959.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris HaA2]
          Length = 222

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 18  MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 77

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 78  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 137

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +L +V    +        H    P    +AISALVNLGYGQ QA  A
Sbjct: 138 AERIVTELKDKVPALGNVDPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQAAAA 195

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A  +Q+I+L L+ +S
Sbjct: 196 IAAASRAAGDDAATAQLIKLGLKELS 221


>gi|256823080|ref|YP_003147043.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069]
 gi|256796619|gb|ACV27275.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069]
          Length = 205

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 4/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG+I+G +      +V+I+   GV Y I  P+ T   L + G+   L     + ++   
Sbjct: 1   MIGRIRGTLIEKIPPFVIIETTAGVGYEIQVPMTTFYQLPEEGEQAILSTHMSIAENLHA 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+S  DR  F  L  V GVG ++A+ +LS +   E V ++   N   + ++PG+  K
Sbjct: 61  LYGFISTKDRALFRELIKVNGVGPKLALAILSGMETDEFVMTVHDGNVDRLVKLPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E+  +    S       S  ++      +    +  A+SAL+ LGY    A+ 
Sbjct: 121 TAERLLVEMSDRLKDWSISAGLPSSQPSEASIAQTAKTDASQEAVSALIALGYKPQIASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AV  V   +   A   ++IRLALR ++ 
Sbjct: 181 AVTQVAHDD---AKSEELIRLALRQLAS 205


>gi|331007236|ref|ZP_08330443.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC1989]
 gi|330418952|gb|EGG93411.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC1989]
          Length = 207

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +      Y+LIDV GV Y +  P+ +   L   G+   L     + ++  +L
Sbjct: 1   MIGRLSGVLIEKQAPYLLIDVAGVGYEVQAPMTSFYPLPVTGEKVILHTHLSVSENAHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F +  +R+ F  L  V GVG ++A+ +LS +   E V+ +   N   + ++PG+  K 
Sbjct: 61  FAFYTLEERRLFRTLIKVSGVGPKMALAILSGMPVNEFVQCVKGDNVAALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+       + VN E A    +  +   +A SAL+ LGY    A  
Sbjct: 121 AERLIIEVKDRLGDLAEWESGGAANVNAESATPELLSNAVVADAESALIALGYKPTVAAQ 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            + +  K E ++     +IRLAL++
Sbjct: 181 MISAAQKIE-SVTSSEALIRLALKS 204


>gi|309379780|emb|CBX21556.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 194

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATNEERQTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V       AD  + +RLAL+ +
Sbjct: 172 VKGV----PKGADVGEGVRLALKNL 192


>gi|254674127|emb|CBA09911.1| holliday junction DNA helicase [Neisseria meningitidis alpha275]
 gi|325145258|gb|EGC67537.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240013]
          Length = 194

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|150397836|ref|YP_001328303.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419]
 gi|166200266|sp|A6UCT8|RUVA_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150029351|gb|ABR61468.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419]
          Length = 205

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+V++DV GV Y+ +C  RTL+ LG+ G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLAKLGRAGEAAVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T  EL  +I LQ+   I++ PG+  K+
Sbjct: 61  FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA +    +   +    +    + + P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRIVTELKNKAPAFVGEMAPSIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK     AD +++IRL L+ +S
Sbjct: 179 VAAALKNGGEGADSARLIRLGLKELS 204


>gi|163751784|ref|ZP_02159001.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99]
 gi|161328348|gb|EDP99508.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99]
          Length = 205

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGVLLEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +T+ E V  +   +   + ++PG+  K 
Sbjct: 61  YGFMTKQERALFRLLIKTNGVGPKLALTILSGMTSVEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +         + +   +AI+AL+ LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYRPAKIVNTAEDDAIAALLALGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K   +     ++I+ +L+++
Sbjct: 181 KSVSAAYK---DGMSSQELIKASLKSM 204


>gi|325205349|gb|ADZ00802.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M04-240196]
          Length = 194

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|315634723|ref|ZP_07890007.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter
           segnis ATCC 33393]
 gi|315476671|gb|EFU67419.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter
           segnis ATCC 33393]
          Length = 204

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQGV Y +  P+ +   L ++G   +LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYHLPEVGKQTSLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   + ++        +        +    +  A++AL+ LGY    A  
Sbjct: 121 AERLLVELKGKFKGVKNNDFFMQADHLPSLSMETIATAEPSNEAVAALIALGYKPVDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K         Q+IR AL+A
Sbjct: 181 MVKKVSK---PALSSEQLIREALKA 202


>gi|75676909|ref|YP_319330.1| Holliday junction DNA helicase motor protein [Nitrobacter
           winogradskyi Nb-255]
 gi|90135442|sp|Q3SP13|RUVA_NITWN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|74421779|gb|ABA05978.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter
           winogradskyi Nb-255]
          Length = 205

 Score =  240 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G    L +ET++R+DQI+L
Sbjct: 1   MIGKLKGVIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGQAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQGVGARVA+ VL  ++  +L  +I L++   +A+ PGI  K+
Sbjct: 61  FGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLASAIALRDKASVARTPGIGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA S ++V    +             P    +AISALVNLGYGQ QAT A
Sbjct: 121 AERIVTELKDKAPSFANVDPTVVHLAGD--LDDQRAPRPVRDAISALVNLGYGQPQATAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +     A+ +Q+IRL L+ +S
Sbjct: 179 IAAASRGAGENAETAQLIRLGLKELS 204


>gi|197284986|ref|YP_002150858.1| Holliday junction DNA helicase RuvA [Proteus mirabilis HI4320]
 gi|227355390|ref|ZP_03839791.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
 gi|229560118|sp|B4ETP7|RUVA_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194682473|emb|CAR42407.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           HI4320]
 gi|227164614|gb|EEI49485.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
          Length = 207

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG+I+G I       VLI+   GV Y I  P+     L  IG    ++ +  +R+D   
Sbjct: 1   MIGRIRGVILEKQPPVVLIEAGNGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  ++   + ++PG+  K
Sbjct: 61  LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQ---DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            A R++ E+K +   L+  + +   D+       +   S       A +AL+ LGY   +
Sbjct: 121 TAERLVVEMKDRFKGLNGDLFEQNGDIELPASASSKAPSAADIEAEASAALIALGYKPQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A   +  V       AD   +I+ ALRA
Sbjct: 181 AAKMISRVATA---GADSETLIKEALRA 205


>gi|162138516|ref|YP_487870.2| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           HaA2]
          Length = 205

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +L +V    +        H    P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKVPALGNVDPAVVHLSGALDDH--RAPRPVTDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A  +Q+I+L L+ +S
Sbjct: 179 IAAASRAAGDDAATAQLIKLGLKELS 204


>gi|304312895|ref|YP_003812493.1| Holliday junction resolvasome DNA-binding subunit [gamma
           proteobacterium HdN1]
 gi|301798628|emb|CBL46860.1| Holliday junction resolvasome DNA-binding subunit [gamma
           proteobacterium HdN1]
          Length = 208

 Score =  240 bits (613), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       ++IDV GV Y +  P+ T   L  +G+   L     +R+D   L
Sbjct: 1   MITHLSGTLRHKQAPQLVIDVSGVGYELDAPMTTFYRLPSLGERVELLTHLVVREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+G +VA+ +LS I   + V  I   +   + +IPG+  K 
Sbjct: 61  FGFATQEERSLFRALIKVTGIGPKVALAILSGIEVPQFVRCINCHDVSALIRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ +      +S+       +  E             A +AL+ LGY   +A 
Sbjct: 121 AERLIVEMQDRLPRTLETSLTALQEESLLGENTRPQQAHRPLDEAEAALIALGYKPQEAA 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             + ++           Q+IR AL+ +
Sbjct: 181 RCLNAL---NTEGLSSEQLIRQALKNM 204


>gi|126668399|ref|ZP_01739356.1| Holliday junction DNA helicase motor protein [Marinobacter sp.
           ELB17]
 gi|126627108|gb|EAZ97748.1| Holliday junction DNA helicase motor protein [Marinobacter sp.
           ELB17]
          Length = 209

 Score =  240 bits (613), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        +++ QG+ Y +  P+ T   L   G   TL     +R+D   L
Sbjct: 1   MIGRIRGILLEKKPAQAMVECQGLGYEVDIPLSTFLNLPDPGQELTLHTHFVVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S LDR  F LL  V GVG ++A+G+LS ++A++ + S+  +++  + ++PG+  K 
Sbjct: 61  FGFSSRLDRDLFRLLIKVNGVGPKLAVGILSGLSASQFIRSVQARDTSALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQA 177
           A R++ E+  +   L    +   +           MP        A +AL+ LGY   +A
Sbjct: 121 AERLLIEMTDRIGQLEGQFELTAASAPGATLPANGMPAANDPREEAEAALIALGYKPQEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A+  + +   +   + Q+IR+ALR +
Sbjct: 181 AKAISRIAE---DGMTNEQLIRMALRNM 205


>gi|322514922|ref|ZP_08067937.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus
           ureae ATCC 25976]
 gi|322119110|gb|EFX91264.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus
           ureae ATCC 25976]
          Length = 201

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IP I  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPSIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++     +   V  E          A  A  ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSV--EMIVATHSHDPADEAQDALVALGYKLADADKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    K  A   Q+IR AL+A
Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199


>gi|329893679|ref|ZP_08269813.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC3088]
 gi|328923606|gb|EGG30918.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC3088]
          Length = 205

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +       ++++  GV Y I  P+ TL  L  +GD   +     +R+D   L
Sbjct: 1   MIGSIRGRLIVKQPPDIVVEAAGVGYEIQVPMTTLFQLPALGDDVLILTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D DRQ F  L  V GVG ++A+ +LS + A      +   +   +  +PG+  K 
Sbjct: 61  YGFVDDTDRQLFRQLIKVNGVGPKLALAILSGMDAVAFARCVGRNDVSALVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +     S +               +    A +A SALV LGY   +A+  
Sbjct: 121 AERLIVEMRDRLGDWLSQLSPQGENAGGIVGATIAHDPIA-DAESALVALGYKPQEASRL 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V SV   +    D   +IRLALR+
Sbjct: 180 VQSVAGDQD--LDSETLIRLALRS 201


>gi|271500732|ref|YP_003333757.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586]
 gi|270344287|gb|ACZ77052.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586]
          Length = 205

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L  +G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIVEKQPPQVLLEVGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  Q    + ++PG+  K 
Sbjct: 61  FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +    A   + P       A +ALV LGY   +A 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPAATGNTTPETDPLAEAEAALVALGYKPQEAG 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V +     AD   +IR ALRA
Sbjct: 181 RMVSKVSR---PGADCETLIRDALRA 203


>gi|254490165|ref|ZP_05103356.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxidans
           DMS010]
 gi|224464651|gb|EEF80909.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxydans
           DMS010]
          Length = 198

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       +++DV GV Y +  P+ T   L  + D  TLF    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPELVLDVHGVGYELSAPMSTFFNLPALNDEVTLFTHMVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F ++ +R  F  L  V GVGA++A+ +LS         S+   ++  + ++PG+  K 
Sbjct: 61  YAFATERERLLFRSLLKVNGVGAKLALTILSGSDVDTFARSVQEGDTASLTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   +SS +  D    +    H+         A+ ALV LGY   +A   
Sbjct: 121 AERLIVEMRDRLKEVSSAMGLDAIVTD----HVKPAAGAKSEAVEALVALGYKAAEADKM 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + S    +    +  Q+IR AL+ 
Sbjct: 177 LRSF---DTEGMNTEQLIRQALQR 197


>gi|27376647|ref|NP_768176.1| Holliday junction DNA helicase RuvA [Bradyrhizobium japonicum USDA
           110]
 gi|44888480|sp|Q89U81|RUVA_BRAJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|27349788|dbj|BAC46801.1| holliday junction DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 205

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDFVILDVGGVGYQVHCSTRTLQHLPSPGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQGVGA+VA+ VL  +  ++L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDQEREWFRLLQTVQGVGAKVALAVLGTLAPSDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + ++V    +             P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDQ--RAPRPVADAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S  +     A+ +Q+IRL L+ ++
Sbjct: 179 IASASRSAGEGAETAQLIRLGLKELA 204


>gi|125972705|ref|YP_001036615.1| Holliday junction DNA helicase subunit RuvA [Clostridium
           thermocellum ATCC 27405]
 gi|256004864|ref|ZP_05429838.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM
           2360]
 gi|281416893|ref|ZP_06247913.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20]
 gi|166230544|sp|A3DBU3|RUVA_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|125712930|gb|ABN51422.1| Holliday junction DNA helicase subunit RuvA [Clostridium
           thermocellum ATCC 27405]
 gi|255991174|gb|EEU01282.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM
           2360]
 gi|281408295|gb|EFB38553.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20]
 gi|316941059|gb|ADU75093.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM
           1313]
          Length = 202

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +E    D+++++  GV Y I+  + T+S +G+IG    ++   ++R+D I L
Sbjct: 1   MFAYIRGRLEYKNNDFLIVESNGVGYRIFTSLSTISGIGEIGQEVKVYTYLYVREDVISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL SV GVG + A+ VLS I+ +    ++I  + K + +  GI  KI
Sbjct: 61  YGFLTQEELNVFELLISVSGVGPKAAVSVLSAISPSRFSLAVITDDVKTLTKAQGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                K    + +  S    A+SAL+ LGY   +A  A
Sbjct: 121 AQRIILELKDKIKKEQLTEYAQSEEGGKV---LDTDSSKMAEAVSALMVLGYSPAEANKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V +++ +I     II+ AL+ ++
Sbjct: 178 VSAVYREDMDI---ETIIKNALKGLA 200


>gi|145631439|ref|ZP_01787209.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
 gi|144982976|gb|EDJ90485.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
          Length = 204

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|292670920|ref|ZP_06604346.1| crossover junction endoribonuclease subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292647541|gb|EFF65513.1| crossover junction endoribonuclease subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 200

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +   + DY  +DV  V Y ++   +T + L  +G+   L++ TH+R+D I L
Sbjct: 1   MIGFLRGKVTYTFPDYCFLDVHDVGYRVFVSHQTRNHL-SVGEEVMLYIHTHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L  + G+G +VA G+LS ITA E    I  ++ K I ++PGI  K 
Sbjct: 60  YGFFSQEEYDLFQHLIGISGIGPKVAQGILSAITANEFYRLIHQKDVKAITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   L+S    D S  +       SM      A  AL+NLG+GQ +    
Sbjct: 120 AERIILELKDK---LTSSSFDDDSFADHAAGFADSMGDKISEATEALLNLGFGQSE---- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + SVLKK+ +     +IIR AL  +
Sbjct: 173 IQSVLKKKMDWESTEEIIRYALAEL 197


>gi|224827243|ref|ZP_03700337.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002]
 gi|224600532|gb|EEG06721.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002]
          Length = 197

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DV GV Y +  P+ T   L  +G+  TL+    +R+D   L
Sbjct: 1   MIGRLTGQLIEKLPPQIVVDVGGVGYEVDVPMSTFYLLPALGEKTTLYTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R+ F  L  V G+GA++A+ +LS ++A EL  ++  ++ K ++ +PGI  K 
Sbjct: 61  FGFASKGERETFRQLIKVGGIGAKIALAILSGLSADELALAVASEDLKRLSSVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK            +          + P    + ++AL+ LGY   +A  A
Sbjct: 121 AERLVLELRGKL-------ATGGAVTTPGGLPFAATPDDKSDIVNALLALGYNDKEAAAA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                K        S  +RLAL+++
Sbjct: 174 ----TKCLPPEVTVSDGVRLALKSL 194


>gi|225374901|ref|ZP_03752122.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM
           16841]
 gi|225213284|gb|EEG95638.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM
           16841]
          Length = 203

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E   EDY++++  G+ Y I+   +T   L  +G+   ++   H+R+D + L
Sbjct: 1   MYAYIKGTLEETGEDYIVVEAGGIGYQIFTTGQTFQYLPSMGEEVKVYTYLHVREDAMIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL  V G+G + A+ +LS +T  +L  +++  ++K IA+ PG+  K 
Sbjct: 61  FGFLTKDDLFVFRLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     +  Q+     N  Q            AI ALV LGY   +A  A
Sbjct: 121 AQRLILELKDKLSLEDAFEQKLAKNDNPVQNKAKG---AKNEAIEALVALGYSSSEALKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +  +  +  D   I++ AL+ ++
Sbjct: 178 LNGI--EITDDTDVEDILKAALKNMA 201


>gi|319775819|ref|YP_004138307.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047]
 gi|317450410|emb|CBY86626.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047]
          Length = 204

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V+K E       Q+IR AL+A
Sbjct: 181 MVKRVVKPE---LTSEQVIREALKA 202


>gi|238796296|ref|ZP_04639805.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC
           43969]
 gi|238719741|gb|EEQ11548.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC
           43969]
          Length = 196

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 5/196 (2%)

Query: 11  GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70
                 VL++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R 
Sbjct: 2   EKQPPLVLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERA 61

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K 
Sbjct: 62  LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121

Query: 131 KAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188
           +   L+  +  +   +    +     S       A SALV LGY   +A+  V  + K  
Sbjct: 122 RFKGLNGDLFNNTGDITLPASTSSQISDADIEAEAASALVALGYKPQEASRLVSKIAK-- 179

Query: 189 KNIADDSQIIRLALRA 204
              AD   +IR ALRA
Sbjct: 180 -PGADCETLIRDALRA 194


>gi|163758803|ref|ZP_02165890.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica
           DFL-43]
 gi|162284093|gb|EDQ34377.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica
           DFL-43]
          Length = 205

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 101/206 (49%), Positives = 141/206 (68%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG IE + ED+VLIDV GVCY+ +C  RTLS LG  G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIEEIDEDHVLIDVHGVCYVAFCSSRTLSRLGSAGEAAVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+R+WF LLQSVQGVGA+VA+ VLS +T +EL  +I LQ+  ++A+ PGI  K+
Sbjct: 61  FGFETALEREWFRLLQSVQGVGAKVALAVLSTLTTSELANAIALQDKAMVARAPGIGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +LS      M    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 AQRIVAELKNKAPALSGDAGSTMGLKQELGEGVASAP--IADAVSALCNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     AD +++IRL L+ ++
Sbjct: 179 VAAAMKTAGEDADSAKLIRLGLKELA 204


>gi|222086988|ref|YP_002545522.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84]
 gi|254766935|sp|B9J9J0|RUVA_AGRRK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221724436|gb|ACM27592.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84]
          Length = 204

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG IE + EDY L+DV GVCY+ YC  RTLS LG +G+ C LF+ET++R+DQIRL
Sbjct: 1   MIGKLKGTIEEIGEDYALVDVHGVCYVAYCSARTLSRLGSVGEACILFIETYVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQ+VQGVGA+VA+ +LS +T +EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMAVLEREWFNLLQTVQGVGAKVALALLSTLTPSELANAIALQDRTAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  + +    +  +   K++      P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRIVTELKNKVPAFAG---EATNIGFKQELGEGVAPAPVSDAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + +K   + AD +++IRL L+ +S
Sbjct: 178 IAAAMKVAGDEADSAKLIRLGLKELS 203


>gi|238786430|ref|ZP_04630350.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           bercovieri ATCC 43970]
 gi|238712664|gb|EEQ04756.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           bercovieri ATCC 43970]
          Length = 196

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 5/196 (2%)

Query: 11  GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70
                 VL++  GV Y +  P+     L ++G    +F +  +R+D   L+GF    +R 
Sbjct: 2   EKQPPLVLLEANGVGYEVQLPMTCFYELPELGQEAIIFTQFIVREDAQLLYGFNDKQERA 61

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K 
Sbjct: 62  LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121

Query: 131 KAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188
           +   L+  +  +   +    +     S       A SALV LGY   +A+  V  + K  
Sbjct: 122 RFKGLNGDLFNNTGDITLPASSSSQLSDADIEAEAASALVALGYKPQEASRLVSKIAK-- 179

Query: 189 KNIADDSQIIRLALRA 204
              AD   +IR ALRA
Sbjct: 180 -PGADCETLIRDALRA 194


>gi|68248920|ref|YP_248032.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae
           86-028NP]
 gi|81336669|sp|Q4QNM5|RUVA_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68057119|gb|AAX87372.1| holliday junction DNA helicase RuvA [Haemophilus influenzae
           86-028NP]
          Length = 204

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|145634688|ref|ZP_01790397.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittAA]
 gi|145638774|ref|ZP_01794383.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittII]
 gi|148827465|ref|YP_001292218.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittGG]
 gi|260582589|ref|ZP_05850379.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127]
 gi|166230557|sp|A5UGC9|RUVA_HAEIG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145268233|gb|EDK08228.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittAA]
 gi|145272369|gb|EDK12277.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittII]
 gi|148718707|gb|ABQ99834.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittGG]
 gi|260094400|gb|EEW78298.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127]
 gi|301169022|emb|CBW28619.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus
           influenzae 10810]
 gi|309750264|gb|ADO80248.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus
           influenzae R2866]
          Length = 204

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|254000106|ref|YP_003052169.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4]
 gi|253986785|gb|ACT51642.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4]
          Length = 192

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       V+ID  GV Y    P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +RQ F  L  V G+GA+ A+ +LS ++  +L +++ LQ + ++ ++PGI  K 
Sbjct: 61  YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K              V+   A      S + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKDKF------------SVDGLTAPAGQPKSASGDVLNALLALGYNEREAMAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    K+       +  IRLAL+++S
Sbjct: 169 V----KQLPADVVVADGIRLALKSLS 190


>gi|15676189|ref|NP_273321.1| Holliday junction DNA helicase motor protein [Neisseria
           meningitidis MC58]
 gi|20455266|sp|Q9K1A2|RUVA_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7225489|gb|AAF40719.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis MC58]
 gi|261391796|emb|CAX49251.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 8013]
 gi|316985194|gb|EFV64146.1| holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76]
 gi|325137090|gb|EGC59686.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M0579]
 gi|325139154|gb|EGC61700.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           ES14902]
 gi|325141101|gb|EGC63604.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis CU385]
 gi|325199468|gb|ADY94923.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76]
 gi|325202908|gb|ADY98362.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240149]
 gi|325207293|gb|ADZ02745.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           NZ-05/33]
          Length = 194

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|161870798|ref|YP_001599971.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 053442]
 gi|189045759|sp|A9M3B7|RUVA_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161596351|gb|ABX74011.1| Holliday junction DNA helicase [Neisseria meningitidis 053442]
 gi|308388484|gb|ADO30804.1| Holliday junction DNA helicase [Neisseria meningitidis alpha710]
 gi|325130991|gb|EGC53718.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           OX99.30304]
 gi|325131591|gb|EGC54298.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M6190]
 gi|325143104|gb|EGC65451.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           961-5945]
 gi|325143174|gb|EGC65520.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           961-5945]
 gi|325197549|gb|ADY93005.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis G2136]
          Length = 194

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|328542537|ref|YP_004302646.1| Holliday junction ATP-dependent DNA helicase ruvA [polymorphum
           gilvum SL003B-26A1]
 gi|326412283|gb|ADZ69346.1| Holliday junction ATP-dependent DNA helicase ruvA [Polymorphum
           gilvum SL003B-26A1]
          Length = 205

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 125/206 (60%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDHVVLDVHGVGYQVHCPSRVLQGLPRTGEAAVLFIETLVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+WF LL +VQGVGA+VA+ VL  + A E+  +I L +   I++ PG+  ++
Sbjct: 61  YGFAQEAEREWFRLLMTVQGVGAKVALAVLGVLKAGEIANAIALGDKATISRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA   +S+    ++        + + P     A+SAL NLGY Q QA+ A
Sbjct: 121 AERILAELKDKAPGYASIDADTLAVAQAVGDDVAARP--VAEAVSALTNLGYAQPQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   LK     A    +IRL LR ++
Sbjct: 179 VARALKAAGEAATTETLIRLGLRELA 204


>gi|73540190|ref|YP_294710.1| Holliday junction DNA helicase motor protein [Ralstonia eutropha
           JMP134]
 gi|90135661|sp|Q475R7|RUVA_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72117603|gb|AAZ59866.1| Holliday junction DNA helicase subunit RuvA [Ralstonia eutropha
           JMP134]
          Length = 193

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGQPVTLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + G+GAR+A+ VLS ++ +EL ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVSELAQAITLQEAGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M ELKGK                        +   A++ ++AL+ LGY + +A TA
Sbjct: 121 AERLMLELKGKL-----------GAELGHAPGAAPVHDSAVDILNALLALGYSEKEAATA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191


>gi|15602842|ref|NP_245914.1| Holliday junction DNA helicase motor protein [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431841|sp|P57893|RUVA_PASMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|12721303|gb|AAK03061.1| RuvA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 204

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +   +   +L+DVQGV Y +  P+ +   L  IG    LF    +R+D   L
Sbjct: 1   MIGHLTGRLVEKHPPEILLDVQGVGYELLLPMTSFYQLPDIGQQTALFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVEEFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +        S   K+  H  +     A  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGIQQEDFFIESQHLKQPEHALNEQDIPASEAISALIALGYKAAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K         Q+IR AL+A
Sbjct: 181 LVKKISK---PALSSEQLIREALKA 202


>gi|251789856|ref|YP_003004577.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591]
 gi|247538477|gb|ACT07098.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591]
          Length = 205

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y ++ P+     L  +G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLIEAGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  Q    + ++PG+  K 
Sbjct: 61  FGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S   +  +             A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNADSDMALPAQTGEAAPQADPQAEAEAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V +     AD   +IR ALRA
Sbjct: 181 RMVNKVSR---PGADCETLIRDALRA 203


>gi|325135068|gb|EGC57696.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M13399]
          Length = 194

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAH---------AVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|134299518|ref|YP_001113014.1| Holliday junction DNA helicase RuvA [Desulfotomaculum reducens
           MI-1]
 gi|172044284|sp|A4J536|RUVA_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134052218|gb|ABO50189.1| Holliday junction DNA helicase subunit RuvA [Desulfotomaculum
           reducens MI-1]
          Length = 199

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +      +V+IDV G+ Y +  P  T   L  +G    LF    +R+D I+ 
Sbjct: 1   MIAYIKGLLAADGPGWVVIDVNGIGYHVSIPSTT--QLPALGHEVKLFTHMSVREDGIQF 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + +++ F+LL +V GVG +VA+ V+S +  + L  +I +++   + ++PG+  K 
Sbjct: 59  FGFAKEDEKECFLLLLNVAGVGPKVALAVVSHLPPSNLRSAIAIEDVNQLVKVPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +++V    +                   A+ AL+ LGY Q +A  A
Sbjct: 119 AQRILLELKDKLKGMAAVEHSTL-------QQSVITTGSGDEAVEALLALGYSQGEARDA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    K      D S +I++AL+ ++
Sbjct: 172 VKKAQKSAPE-EDLSALIKIALKELA 196


>gi|87118957|ref|ZP_01074855.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121]
 gi|86165348|gb|EAQ66615.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121]
          Length = 199

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DV GV Y +   + T   L  IG+  TL+    +++D   L
Sbjct: 1   MIGRLVGYLVEKVPPELMLDVNGVGYELTASMTTFYELPAIGEKVTLYTHFQVKEDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +R  F +L  V GVG ++A+ VLS +++ EL+ ++   +   + +IPG+  K 
Sbjct: 61  YAFKQKDERALFRILIKVNGVGPKMALSVLSSMSSDELIANVQDSDVTALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L    +QD+    +    + + P     A +ALV+LGY   +A  A
Sbjct: 121 AERLIIELRDK---LGQAAKQDLFATPEVLRQVQADP--RQEAEAALVSLGYKPQEAAKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V     +     Q+I+ AL+ +
Sbjct: 176 IAKVP---VSSDSSEQVIKSALKNM 197


>gi|329123663|ref|ZP_08252223.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           aegyptius ATCC 11116]
 gi|327469862|gb|EGF15327.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           aegyptius ATCC 11116]
          Length = 204

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIRLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V+K E       Q+IR AL+A
Sbjct: 181 MVKRVVKPE---LTSEQVIREALKA 202


>gi|325267123|ref|ZP_08133791.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella
           denitrificans ATCC 33394]
 gi|324981361|gb|EGC17005.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella
           denitrificans ATCC 33394]
          Length = 194

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       ++IDVQGV Y +   ++T   L   G+   L+ +  +R+D   L
Sbjct: 1   MIGRLHGILAEKQPPQIVIDVQGVGYEVEVSMQTFYTLPAAGEAVRLYTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS +++ EL +++  ++ K ++ +PGI  K 
Sbjct: 61  FGFADAGERATFRQLIKVSGIGAKTALGILSALSSDELAQAVAQEDVKRLSSVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK            S          +      + +  L+ LGY + +A  A
Sbjct: 121 AERMILELRGKLAG---------SSAADTALFAAAAQDSRQDVVQTLMALGYSEKEAQAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                K   +  +  + +R AL+ +
Sbjct: 172 ----CKSLPDDVEVGEGVRQALKLM 192


>gi|116748437|ref|YP_845124.1| Holliday junction DNA helicase RuvA [Syntrophobacter fumaroxidans
           MPOB]
 gi|166231451|sp|A0LGY7|RUVA_SYNFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116697501|gb|ABK16689.1| Holliday junction DNA helicase subunit RuvA [Syntrophobacter
           fumaroxidans MPOB]
          Length = 197

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     DY++IDV GV YI+Y P+ T   L   GD   L + TH+R+D I+L
Sbjct: 1   MIGHLEGRLRHKAPDYIVIDVHGVGYIVYVPLSTFYDLPGPGDTVALNIHTHIREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F+ L +V GVG R+A+ +LS +T  +L   I+ Q    +  IPG+  KI
Sbjct: 61  YGFRTVAEKDMFLRLITVNGVGPRLAVNILSGLTPDDLHRIILQQEGFRLKSIPGVGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K           +    + +    +  S   +A SALVNLGY   +A  A
Sbjct: 121 AERILLELRDKM---------SVKKGREAEQPAPAAESSYGDAYSALVNLGYRPAEAEKA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +   +K         ++++  LR ++
Sbjct: 172 LGKAIKSLGADPPVEKLLKETLRLLA 197


>gi|294635834|ref|ZP_06714289.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685]
 gi|291090806|gb|EFE23367.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685]
          Length = 195

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 4/196 (2%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           I       VL++  GV Y +  P+     L + G    +F    +R+D   L+GF +  +
Sbjct: 2   ILEKQPPQVLLEAGGVGYEVQMPMTCFYELPQPGSEAVIFTHFVVREDAQLLYGFNNKQE 61

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K A R++ E+
Sbjct: 62  RALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALIKLPGVGKKTAERLVVEM 121

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188
           K +   LS  +      +    A   +       A++AL+ LGY   +A+  V  V    
Sbjct: 122 KDRFKGLSGDLFTPSDDL-PPSAQPQAQADAEGEAVAALIALGYKPQEASRLVNRVAS-- 178

Query: 189 KNIADDSQIIRLALRA 204
              AD   +IR ALRA
Sbjct: 179 -VGADSETLIRDALRA 193


>gi|148825408|ref|YP_001290161.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittEE]
 gi|229846401|ref|ZP_04466509.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 7P49H1]
 gi|166230556|sp|A5UAH7|RUVA_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148715568|gb|ABQ97778.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittEE]
 gi|229810494|gb|EEP46212.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 7P49H1]
          Length = 204

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|187925318|ref|YP_001896960.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans
           PsJN]
 gi|229560013|sp|B2SYK1|RUVA_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187716512|gb|ACD17736.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans
           PsJN]
          Length = 193

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++LID  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK                   A   S    A + ++AL+ LGY + +A TA
Sbjct: 121 AERLLLELKGKI-----------GADLGAMAGAASASDHASDILNALLALGYSEKEALTA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V          S+ I+LAL+A+S
Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191


>gi|91216982|ref|ZP_01253945.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis
           ATCC 700755]
 gi|91184853|gb|EAS71233.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis
           ATCC 700755]
          Length = 193

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      ++++D  G+ Y +   + T S L K  +  T++    +++D   L
Sbjct: 1   MITQLRGRLLEKNPTHIVVDCNGIGYEVNISLHTFSRL-KGEEQITIYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F  L SV G+GA  A  +LS +T  ++VE+I  ++S  I  I GI  K 
Sbjct: 60  YGFMEKAERLVFRQLLSVSGIGANTARMMLSSLTPEQVVEAISTEDSDTIQSIKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K            S     +       S    A+SAL  LGY + Q+   
Sbjct: 120 AQRVILDLKDKI----------RSSEEYSEIVNTPSNSNKEEALSALETLGYTRKQSGKI 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +     + A+   II+LAL+ +
Sbjct: 170 ISKICNNNPD-ANVEDIIKLALKNL 193


>gi|167856020|ref|ZP_02478765.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus
           parasuis 29755]
 gi|167852859|gb|EDS24128.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus
           parasuis 29755]
          Length = 202

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 4/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +++DVQGV Y +  P+ +   L  + +   +F    +R+D   L
Sbjct: 1   MIGRLCGRIIEKSPPSMVLDVQGVGYEVLMPMTSFYNLPDLNEDTMIFTHLVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R  F  L    GVG ++A+ +LS ++ +E + +I  +    + +IPGI  K 
Sbjct: 61  FGFVQKQERMLFRELIKTNGVGPKLALAILSAMSVSEFMSAIEQEELAKLIKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +L       +       +     P     AI AL++LGY    A   
Sbjct: 121 AERLLVELKGKFSTLFHHEISILQPSGNLLSMESMSP--VNEAIDALISLGYKAADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V +K  + +   Q+IR AL+
Sbjct: 179 VKKVNRK--SESTSEQLIREALK 199


>gi|304389092|ref|ZP_07371136.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           meningitidis ATCC 13091]
 gi|304336965|gb|EFM03155.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           meningitidis ATCC 13091]
          Length = 194

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|295091401|emb|CBK77508.1| Holliday junction DNA helicase subunit RuvA [Clostridium cf.
           saccharolyticum K10]
          Length = 248

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  I+G +    +   +++  G+ Y I+ P+  L  L  +G    ++    +R+D + L+
Sbjct: 43  ISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSLY 102

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GFL+  DR+ F  L  V G+G + A+G+L  +   +L  +I+  + K I++ PGI  K A
Sbjct: 103 GFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKTA 162

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQDQATTA 180
            RI+ +LK K  +         S    +     S     A  A+ ALV LGY   +A+ A
Sbjct: 163 QRIILDLKDKVSAEEMFPSVTASDGGAKAPEAASLTAEAAREAVDALVALGYSNLEASKA 222

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  +     D   +++ +L+ ++
Sbjct: 223 VKQV--EVTEEMDAEAVLKASLKYLA 246


>gi|240017426|ref|ZP_04723966.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA6140]
 gi|240081568|ref|ZP_04726111.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA19]
 gi|240113847|ref|ZP_04728337.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae MS11]
 gi|240126556|ref|ZP_04739442.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           SK-92-679]
 gi|240129018|ref|ZP_04741679.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268597664|ref|ZP_06131831.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA19]
 gi|268599915|ref|ZP_06134082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           MS11]
 gi|268685136|ref|ZP_06151998.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687398|ref|ZP_06154260.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268551452|gb|EEZ46471.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA19]
 gi|268584046|gb|EEZ48722.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           MS11]
 gi|268625420|gb|EEZ57820.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627682|gb|EEZ60082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 194

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDRLFAASPAADETEDIVSTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|325203380|gb|ADY98833.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240355]
          Length = 194

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|297170981|gb|ADI21996.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           myxobacterium HF0200_01L06]
          Length = 202

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       +++DV GV Y +  P+ T + L   G   +L+V TH+R+D   L
Sbjct: 1   MIARLEGTLFEKTPTRIVVDVSGVGYELSVPLSTFATLPDEGKTVSLWVHTHVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F LL     VG R+A  +LS I    L +++   + KV+  +PGI  K+
Sbjct: 61  YGFATTRERDVFHLLLRANRVGPRLAQTILSGIDPAALCDALGRGDVKVLRGVPGIGPKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+  A  L+  +        +        P  A  A+SAL+NLGY + +A   
Sbjct: 121 AERMVVELRDAASELAGALGSAGPSEGRP-----VRPDPAEEALSALLNLGYPRSKAERT 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + + + +    A   Q+IR ALR++S 
Sbjct: 176 IEAAIGETGEDASIEQVIRAALRSLSA 202


>gi|316932642|ref|YP_004107624.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           DX-1]
 gi|315600356|gb|ADU42891.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           DX-1]
          Length = 205

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGVIDSYGEDYVILDVHGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +LS+V    +        +    P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKVPALSNVDPAVVHLSGAIDDNTA--PRAVADAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  +     A  +Q+I+L L+ +S
Sbjct: 179 VAAASRSAGEDAATAQLIKLGLKELS 204


>gi|145590058|ref|YP_001156655.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|189045760|sp|A4T027|RUVA_POLSQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145048464|gb|ABP35091.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 193

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +  ++   +L+D QGV Y I  P+ TL  L ++    TL     +R+D  +L
Sbjct: 1   MIGRIQGTLVSVHPPRLLVDCQGVGYEIDVPMSTLYQLPEVNQKITLLTHFQVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++++R+ F  L  + GVG+R A+ VLS ++  EL ++I LQ +  + Q+PGI  K 
Sbjct: 61  FGFATEIEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELKGK      +       +                 + AL++LGY + +A  A
Sbjct: 121 AERLCLELKGKLAPDLGITGGKPQAI-----------EATSEVLQALLSLGYSEKEALLA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +          S  IR+ L+ +S
Sbjct: 170 LKQI----PPETSVSDGIRMGLKYLS 191


>gi|313202065|ref|YP_004040723.1| holliday junction DNA helicase ruva [Methylovorus sp. MP688]
 gi|312441381|gb|ADQ85487.1| Holliday junction DNA helicase RuvA [Methylovorus sp. MP688]
          Length = 192

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       V+ID  GV Y    P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +RQ F  L  V G+GA+ A+ +LS ++  +L +++ LQ + ++ ++PGI  K 
Sbjct: 61  YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K              V+   A      S + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKDKF------------SVDGLAAPAGQAKSASGDVLNALLALGYNEREAMAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    K+       +  IRLAL+++S
Sbjct: 169 V----KQLPADVVVADGIRLALKSLS 190


>gi|299134170|ref|ZP_07027363.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2]
 gi|298590917|gb|EFI51119.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2]
          Length = 205

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 136/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y++ C  RTL  L   G+   L +ET++R+DQIRL
Sbjct: 1   MIGKLKGLIDSYGEDYVVLDVQGVGYLVSCSARTLQALPSPGEAAVLSIETYVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VLS +  ++L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +SV    +   +         P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFASVDPAVVHLASAVDDD--RAPGPVRDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S  +     A+ +++IRL L+ ++
Sbjct: 179 IASASRDAGEGAETTKLIRLGLKELA 204


>gi|268589737|ref|ZP_06123958.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131]
 gi|291314889|gb|EFE55342.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131]
          Length = 205

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N     + + +M      A +AL+ LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPSVNSKVPNMADIEAEAAAALIALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K +   +D   +IR ALRA
Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203


>gi|121634135|ref|YP_974380.1| Holliday junction DNA helicase motor protein [Neisseria
           meningitidis FAM18]
 gi|166230574|sp|A1KRU4|RUVA_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120865841|emb|CAM09573.1| Holliday junction DNA helicase [Neisseria meningitidis FAM18]
          Length = 194

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAH---------AVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|86134376|ref|ZP_01052958.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp.
           MED152]
 gi|85821239|gb|EAQ42386.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp.
           MED152]
          Length = 193

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V+ID  GV Y+++  + T S L +  +   L+    +R D   L
Sbjct: 1   MITQVRGRLVEKSPTEVVIDCNGVGYLLHISLNTFSGLPE-DENVVLYTHLSIRDDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R+ F LL SV GVG  +A  + S +T+ E+ ++I  +N  VI  + GI  K 
Sbjct: 60  FGFINKTEREVFKLLISVSGVGPSIARTMCSSMTSDEIQQAIASENVAVIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +             N ++  + +  +    A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIVDLKDKILK----------TFNIDEVSVSASNTNKDEALSALEVLGFNRKQSDKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VLK   + A    II+LAL+ +
Sbjct: 170 VNTVLKANPD-ASVENIIKLALKNL 193


>gi|59802051|ref|YP_208763.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA 1090]
 gi|194099623|ref|YP_002002754.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999822|ref|ZP_04719746.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae 35/02]
 gi|240014978|ref|ZP_04721891.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI18]
 gi|240116581|ref|ZP_04730643.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID18]
 gi|240118805|ref|ZP_04732867.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID1]
 gi|240122047|ref|ZP_04735009.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID24-1]
 gi|240124344|ref|ZP_04737300.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID332]
 gi|254494604|ref|ZP_05107775.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           1291]
 gi|260439658|ref|ZP_05793474.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI2]
 gi|268595632|ref|ZP_06129799.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           35/02]
 gi|268602250|ref|ZP_06136417.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID18]
 gi|268604516|ref|ZP_06138683.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID1]
 gi|268682971|ref|ZP_06149833.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID332]
 gi|291042899|ref|ZP_06568640.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           DGI2]
 gi|293398091|ref|ZP_06642296.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62]
 gi|75355491|sp|Q5F636|RUVA_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560109|sp|B4RPG0|RUVA_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|59718946|gb|AAW90351.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA
           1090]
 gi|193934913|gb|ACF30737.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513644|gb|EEH62989.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           1291]
 gi|268549021|gb|EEZ44439.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           35/02]
 gi|268586381|gb|EEZ51057.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID18]
 gi|268588647|gb|EEZ53323.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID1]
 gi|268623255|gb|EEZ55655.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID332]
 gi|291013333|gb|EFE05299.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           DGI2]
 gi|291611354|gb|EFF40424.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62]
 gi|317165112|gb|ADV08653.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 194

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAASPAADETEDIVSTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|192289700|ref|YP_001990305.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           TIE-1]
 gi|229560122|sp|B3QHS2|RUVA_RHOPT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|192283449|gb|ACE99829.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           TIE-1]
          Length = 205

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +LS+V    +             P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKVPALSAVDPAVVKLSG--AIDDNRAPRAVTDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  +     A+ +Q+I+L L+ +S
Sbjct: 179 VATASRTAGEDAETAQLIKLGLKELS 204


>gi|16272267|ref|NP_438479.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae Rd
           KW20]
 gi|260581219|ref|ZP_05849038.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW]
 gi|1173330|sp|P44632|RUVA_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|1573280|gb|AAC21976.1| Holliday junction DNA helicase (ruvA) [Haemophilus influenzae Rd
           KW20]
 gi|260092144|gb|EEW76088.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW]
          Length = 204

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V  V K E       Q+IR AL+
Sbjct: 181 MVKRVAKPE---LTSEQVIREALK 201


>gi|209886413|ref|YP_002290270.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans
           OM5]
 gi|226698735|sp|B6JIZ6|RUVA_OLICO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209874609|gb|ACI94405.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans
           OM5]
          Length = 205

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 137/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y+++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGVIDSYGEDYVILDVQGVGYLVHCATRTLQALPSSGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VLS +  ++L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + ++V    +             P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDD--RAPRPVKDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + SV +     A+ +Q+IRL L+ ++
Sbjct: 179 IASVARDAGEGAETAQLIRLGLKELA 204


>gi|261855148|ref|YP_003262431.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus
           c2]
 gi|261835617|gb|ACX95384.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus
           c2]
          Length = 206

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +      ++L+DVQGV Y +  P+ TL  L   G   TL + T +R+D   L
Sbjct: 1   MIGRLKGILVNKQPPWILLDVQGVGYEVEVPLSTLFDLPANGQEATLLIHTVVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +++R+ F  L  V GVGA++A+GVLS + A E   +I   +   + ++PG+  K 
Sbjct: 61  YGFSREVERKLFRHLLKVTGVGAKLALGVLSGMNAEEFAGAIARNDIAALIRLPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +           ++    +   +  +      A+SAL  LGY   ++   
Sbjct: 121 AERLVIEMRDRLAE-GFFDGATLATAAGKMGDVVPLAGADQEAMSALEALGYKPAESQRM 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V           QIIRLAL+  +
Sbjct: 180 VKAV--PGAETLPVEQIIRLALKPFA 203


>gi|288939916|ref|YP_003442156.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM
           180]
 gi|288895288|gb|ADC61124.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM
           180]
          Length = 211

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 9/212 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I   +   +L+DV GV Y +  P+ T   L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLQGRILAKHPPQLLLDVNGVGYELEAPMSTFYGLPAVGETATLLTHLAVREDAWTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ + DR  F  L  V GVGAR+A+ +LS + A    + +  +++  + ++PGI  K 
Sbjct: 61  YGFIRERDRALFRALIKVTGVGARMALAILSGMDAARFAQCVEQEDATALTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ------AHICSMPSFAINAISALVNLGYGQ 174
           A R++ E++ +   +       +     +       A + +      +A+SALV LGY  
Sbjct: 121 AERLIIEMRDRLGGVMIAPGAALPSAAGQPASGTTTADVVAEDQALADAVSALVALGYKP 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A     +V   +       +IIR ALR+++
Sbjct: 181 PDANRMARAV---DDGAKTAEEIIRAALRSVN 209


>gi|261400495|ref|ZP_05986620.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC
           23970]
 gi|269209755|gb|EEZ76210.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC
           23970]
          Length = 194

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V       AD  + +RLAL+ +
Sbjct: 172 VKGV----PKGADVGEGVRLALKNL 192


>gi|33152771|ref|NP_874124.1| Holliday junction DNA helicase motor protein [Haemophilus ducreyi
           35000HP]
 gi|38372436|sp|Q7VKV4|RUVA_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33148995|gb|AAP96513.1| Holliday junction DNA helicase RuvA [Haemophilus ducreyi 35000HP]
          Length = 201

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQG+ Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLYGKIIEKQPPEMVIDVQGIGYEVLLPMTSFYHLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   ++  +    + +IPG+  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVVQFANAVENEELVKLTKIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK      + Q D    +  +  + +     +  A  AL+ LGY    A  
Sbjct: 121 AERLLVELKGK---FKGIAQTDFFVEHSHETMVATYEIDASEEARDALLALGYKLTDAEK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V    K+ A   Q+IR AL+A
Sbjct: 178 MIKKV---HKSGATSEQLIRDALKA 199


>gi|91785164|ref|YP_560370.1| Holliday junction DNA helicase motor protein [Burkholderia
           xenovorans LB400]
 gi|296157351|ref|ZP_06840187.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1]
 gi|123358465|sp|Q13UC1|RUVA_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91689118|gb|ABE32318.1| DNA recombination protein, RuvA [Burkholderia xenovorans LB400]
 gi|295892687|gb|EFG72469.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1]
          Length = 193

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK                   A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKGKI-----------GADLGAMAGAASASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V          S+ I+LAL+A+S
Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191


>gi|242239574|ref|YP_002987755.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703]
 gi|242131631|gb|ACS85933.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703]
          Length = 204

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y ++ P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLIEAAGVGYEVHMPMTCFYELPELGQESVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVFAVEREEIGALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +    S ++    A     P     A +ALV LGY   +A  
Sbjct: 121 AERLVVEMKDRFKGLNGDLFTAASDISLPATAGKADEPDPQAEAEAALVALGYKPQEAAR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V + +   AD   +IR ALRA
Sbjct: 181 MVSKVARPD---ADCETLIREALRA 202


>gi|331663357|ref|ZP_08364267.1| holliday junction DNA helicase RuvA [Escherichia coli TA143]
 gi|331059156|gb|EGI31133.1| holliday junction DNA helicase RuvA [Escherichia coli TA143]
          Length = 188

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 3/188 (1%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           VLI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L 
Sbjct: 2   VLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 61

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
              GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L 
Sbjct: 62  KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 121

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
             +    + +        +       A++ALV LGY   +A+  V  + + +   A    
Sbjct: 122 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSET 178

Query: 197 IIRLALRA 204
           +IR ALRA
Sbjct: 179 LIREALRA 186


>gi|39934175|ref|NP_946451.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           CGA009]
 gi|81563776|sp|Q6NAT0|RUVA_RHOPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|39648023|emb|CAE26543.1| RuvA; Holliday branch migration protein [Rhodopseudomonas palustris
           CGA009]
          Length = 205

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +LS+V    +             P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKVPALSAVDPAVVKLSG--AIDDNRAPRAVADAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  +     A+ +Q+I+L L+ +S
Sbjct: 179 VATASRTAGEDAETAQLIKLGLKELS 204


>gi|119477229|ref|ZP_01617465.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2143]
 gi|119449592|gb|EAW30830.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2143]
          Length = 202

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+DV GV Y I  P+ T+  L ++G    L     +R+D   L
Sbjct: 1   MIGRITGVLLEKQAPELLVDVNGVGYEIQAPMTTIYQLPEVGQVVVLHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  V GVG ++A+ +LS I   E V  +   ++  + ++PG+  K 
Sbjct: 61  YGFAELQERRLFRALIKVNGVGPKLALTILSGIETDEFVRCVRDGDTLSLVRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +        Q D        + +    S    A SAL+ LGY   +A   
Sbjct: 121 AERLLVEMKDRLKDW----QIDSITDEFRVSGMGFSNSITAEAESALIALGYKPQEAAK- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                    ++    Q+IR AL+ +
Sbjct: 176 -AIAAANNDSMTSSEQLIRAALKNM 199


>gi|157371017|ref|YP_001479006.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568]
 gi|167012663|sp|A8GFI8|RUVA_SERP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157322781|gb|ABV41878.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568]
          Length = 203

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L+  +  + S +    A   +       A SALV LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPTAAQAAELDAEAEAASALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K     AD   +IR ALRA
Sbjct: 181 VSKIAK---PGADCETLIRDALRA 201


>gi|291550303|emb|CBL26565.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus torques
           L2-14]
          Length = 202

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + E   +++  G+ Y IY   +TLS L  +G+   +    ++R+D ++L
Sbjct: 1   MISYIRGELAAVQEQKAIVEAGGIGYGIYMSQQTLSMLPAVGEEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D Q F LL  V G+G +  + +LS ++  EL  +++  + K I+  PGI  K 
Sbjct: 61  YGFLTGEDLQVFRLLIGVSGIGPKAGLNILSCLSPDELRFAVLAGDVKTISSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K  S+  V++Q      + +    +       A+ AL  LGYG  ++  A
Sbjct: 121 AEKLILELKDKM-SIEDVLEQAAHGGEQSKEIEATDTGMQAEAVQALTALGYGSAESLRA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V     + A    ++R AL+ +
Sbjct: 180 VKKV---SVDCASVEDLLREALKNL 201


>gi|253688206|ref|YP_003017396.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495651|sp|C6DFF1|RUVA_PECCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|251754784|gb|ACT12860.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 205

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S   +    +           A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPASAESRASDPEAEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + + E   AD   +IR ALRA
Sbjct: 181 RMISKIARPE---ADCETLIRDALRA 203


>gi|260060653|ref|YP_003193733.1| Holliday junction DNA helicase RuvA [Robiginitalea biformata
           HTCC2501]
 gi|88784783|gb|EAR15952.1| Holliday junction DNA helicase motor protein [Robiginitalea
           biformata HTCC2501]
          Length = 193

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +   +  +++I+  GV Y +   + T S L    +   ++    +R+D   L
Sbjct: 1   MIEHLTGRLIEKHPTHLVIECAGVGYFVNISLNTFSALPDE-EQLRIYTHLQVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R+ F LL SV GVGA  A  +LS +T  +L E+I   +   I  + GI  K 
Sbjct: 60  FGFYSVAEREAFRLLISVSGVGASTARTMLSSMTPAQLREAIASGDVPAIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ K + +  + +  +   N  +            A+SAL  LGY + Q+  A
Sbjct: 120 AQRVILDLRDKILKIYDLDEVSLKPDNTNK----------EEALSALEVLGYSRKQSEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL+++ + A    II+  L+ +
Sbjct: 170 VDTVLRQDPS-ASVEGIIKQTLKNL 193


>gi|319896645|ref|YP_004134838.1| holliday junction DNA helicase ruva [Haemophilus influenzae F3031]
 gi|317432147|emb|CBY80498.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3031]
          Length = 204

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKLVAKPE---LTSEQVIREALKA 202


>gi|146338241|ref|YP_001203289.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. ORS278]
 gi|166230522|sp|A4YMC6|RUVA_BRASO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146191047|emb|CAL75052.1| Holliday junction DNA helicase ruvA [Bradyrhizobium sp. ORS278]
          Length = 205

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK++G I+   ED+V+IDV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLRGLIDSYAEDFVIIDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VL  +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLGNAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + ++V    +             P    +AISAL+NLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFANVDPGVVRLSG--AIEESRAPQPVADAISALINLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A+ +Q+IRL L+ ++
Sbjct: 179 IAAASRAAGDKAETAQLIRLGLKELA 204


>gi|254805692|ref|YP_003083913.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
 gi|254669234|emb|CBA08082.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
          Length = 194

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|313669264|ref|YP_004049548.1| Holliday junction DNA helicase [Neisseria lactamica ST-640]
 gi|313006726|emb|CBN88196.1| Holliday junction DNA helicase [Neisseria lactamica 020-06]
          Length = 194

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++ +         V        S      + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAPSENDETNDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|325128974|gb|EGC51825.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis N1568]
          Length = 194

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIIIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAH---------AVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|222149652|ref|YP_002550609.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4]
 gi|254766936|sp|B9JRI6|RUVA_AGRVS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221736634|gb|ACM37597.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4]
          Length = 205

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + +D+VL+DV GVCY+ +C  RTL+ LG  G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGDDHVLVDVHGVCYVAHCSSRTLARLGSPGEAIVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S L+R+WF LLQSVQGVGA+VA+ +L+ +T +EL  +I LQ+   IA+ PG+  K+
Sbjct: 61  FGFMSALEREWFNLLQSVQGVGAKVALAILATLTPSELANAIALQDKPAIARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK KA + +      +    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 ALRLVTELKNKAPAFTGDAGSAIGLKQELGEGVASAP--VSDAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + LK     AD +++IRL L+ +S
Sbjct: 179 IAAALKNGGEGADSAKLIRLGLKELS 204


>gi|309972527|gb|ADO95728.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus
           influenzae R2846]
          Length = 204

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K         Q+IR AL+A
Sbjct: 181 MVKRVAK---PALTSEQVIREALKA 202


>gi|148258116|ref|YP_001242701.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. BTAi1]
 gi|166230521|sp|A5ERK1|RUVA_BRASB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146410289|gb|ABQ38795.1| Holliday junction DNA helicase subunit RuvA [Bradyrhizobium sp.
           BTAi1]
          Length = 205

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYAEDFVILDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VL  +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + + V    +      +      P    +AISAL+NLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFADVDPGVIRLSGAIED--SRAPQPIADAISALINLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A+ +Q+IRL L+ ++
Sbjct: 179 IAAASRAAGDKAETAQLIRLGLKELA 204


>gi|261379647|ref|ZP_05984220.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703]
 gi|284798132|gb|EFC53479.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703]
          Length = 194

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL ++I  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSTMNADELAQAIAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S +         V+       ++   + + I+ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVSHT---------VSDGLFAPDAVADESQDIINTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192


>gi|225568080|ref|ZP_03777105.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM
           15053]
 gi|225163033|gb|EEG75652.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM
           15053]
          Length = 205

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + ED V++DV GV Y IY   +++S L   G    +    ++++D ++L
Sbjct: 1   MISYIRGELAAVEEDKVIVDVGGVGYGIYMSGQSMSLLPSAGREVKIHTYLNVKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F L+  V G+G +  +G+LS ++  +L  ++I  + K I   PGI  K 
Sbjct: 61  FGFLTRDDLDIFRLIIGVNGIGPKGGLGILSALSPDDLRFAVISNDVKAIQAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K      +        N   A   S+      A+ ALV LGYG  ++  A
Sbjct: 121 AEKLILELKDKLRIEDVLEHAAHGSENTSAAAAASVNEVQSEAVQALVALGYGSTESLKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +     +   +++ AL+ +
Sbjct: 181 VKQV--EIAEHMEVEDVLKSALKHM 203


>gi|307130888|ref|YP_003882904.1| component of RuvABC resolvasome, regulatory subunit [Dickeya
           dadantii 3937]
 gi|306528417|gb|ADM98347.1| component of RuvABC resolvasome, regulatory subunit [Dickeya
           dadantii 3937]
          Length = 205

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y ++ P+     L  +G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLIEASGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  Q    + ++PG+  K 
Sbjct: 61  FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--AISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +   +A   + P       A +ALV LGY   +A 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPEAAGKAEPEADPQAEAEAALVALGYKPQEAG 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V +     AD   +IR ALRA
Sbjct: 181 RMVSKVAR---PGADCETLIREALRA 203


>gi|270157092|ref|ZP_06185749.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968]
 gi|289164497|ref|YP_003454635.1| holliday junction DNA helicase [Legionella longbeachae NSW150]
 gi|269989117|gb|EEZ95371.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968]
 gi|288857670|emb|CBJ11513.1| holliday junction DNA helicase [Legionella longbeachae NSW150]
          Length = 198

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G+I        ++++V GV Y +   + T   L  +     L + T +R+D + 
Sbjct: 1   MIGWLDGHIVDKYQPGKLVLNVHGVGYDVETSLNTFFKLDTLNGSVGLHIHTIVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R+ F  L  V GVG ++AM +LS IT  E +E I  +N+  + ++PGI  K
Sbjct: 61  LYGFLDRQERELFRALIKVNGVGPKLAMSILSSITPNEFIECIQQENAVFLMKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++              S    E        S    A+SAL  LGY   +A  
Sbjct: 121 TAERLVVEMRDSLKQF--------SVPCSESLKSDHRMSDQDEAVSALEVLGYKPQEALK 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AV  V      +    Q+IR AL+ ++ 
Sbjct: 173 AVKKV---NDGVKSCEQLIRDALQVLAA 197


>gi|319409331|emb|CBI82975.1| holliday junction DNA helicase RuvA [Bartonella schoenbuchensis R1]
          Length = 211

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 127/207 (61%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + +D++++DVQGV Y ++   R LS L  +G+   LF+ETH+R + IRL
Sbjct: 1   MIGKLKGILDSICDDHIILDVQGVGYSVFVSNRLLSSLPTLGEHLNLFIETHVRAEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I + PGI  K+
Sbjct: 61  FGFTTKAERDWFCLLQNVPGVGAKVALAILGTLSPGELAQAIALNDVAMIKRAPGIGQKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++E K KA+  +   +      +  QA   + P    +A+SAL  LG+ +DQA  A
Sbjct: 121 SERIISEFKNKALPFNEESKNTAHLASNLQAQETNQP--VNDALSALTKLGFDRDQAAQA 178

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +   L   E+     + +IR +L+ +S
Sbjct: 179 LSCALSSLEEETVSSALLIRHSLKLLS 205


>gi|283796454|ref|ZP_06345607.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1]
 gi|291075862|gb|EFE13226.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1]
          Length = 248

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 7/208 (3%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  I+G +    +   +++  G+ Y I+ P+  L  L  +G    ++    +R+D + L+
Sbjct: 43  ISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSLY 102

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GFL+  DR+ F  L  V G+G + A+G+L  +   +L  +I+  + K I++ PGI  K A
Sbjct: 103 GFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKTA 162

Query: 122 SRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            RI+ +LK K  +   L+SV   D      E A + +    A  A+ ALV LGY   +A+
Sbjct: 163 QRIILDLKDKVSAEEILASVTASDGGAKAPEAASLTA--EAAREAVDALVALGYSNLEAS 220

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV  V  +     D   +++ +L+ ++
Sbjct: 221 KAVKQV--EVTEEMDAEAVLKASLKYLA 246


>gi|226942024|ref|YP_002797098.1| RuvA [Laribacter hongkongensis HLHK9]
 gi|254766965|sp|C1D5S2|RUVA_LARHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226716951|gb|ACO76089.1| RuvA [Laribacter hongkongensis HLHK9]
          Length = 202

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   +L+D  GV Y +  P+ T   L  + +   L+    +R+D   L
Sbjct: 1   MIGRLSGTLLEKHPPQILVDAGGVGYEVDVPMSTFCRLPGLNEPVVLWTHMAVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F  L  + GVG ++A+ +LS +   EL  ++  ++ K ++++PGI  K 
Sbjct: 61  FGFAGRAERELFRQLIRISGVGGKLALALLSSLEPDELARAVAQEDIKTLSRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK  SL S     +S      A +        +   AL  LGY   +A  A
Sbjct: 121 AERLILELRGKLGSLPS--ADLLSPAPAAGAALLVENDERADISQALQALGYSAREAEAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + SV     +  D +  IRLAL+A++
Sbjct: 179 LKSV----PDGTDVATGIRLALKALA 200


>gi|212711936|ref|ZP_03320064.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM
           30120]
 gi|212685458|gb|EEB44986.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM
           30120]
          Length = 205

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +   +S ++    ++   S       A +AL+ LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNSVSDIDLPSVKSQGPSQADIEAEAAAALIALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K +   +D   +IR ALRA
Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203


>gi|228473784|ref|ZP_04058529.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274805|gb|EEK13628.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC
           33624]
          Length = 196

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      Y++ID  GV Y +   + T S L        ++    +++D   L
Sbjct: 1   MITHLQGRLVEKTPTYLVIDCNGVGYWVNISLHTFSQLSDT-QQLKIYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV GVGA  A  +LS ++  +L  +I+  + + I  + GI  K 
Sbjct: 60  FGFFDKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNSDVRTIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K + L+          N         PS    A++AL  LGY +  A   
Sbjct: 120 AQRIILDLKEKMVKLTG--------DNASLVAASQSPSNKEEALAALEVLGYPRKAAEAV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L +        Q+I+ AL+ +
Sbjct: 172 VNKILTQSGQEFSVEQLIKQALKQL 196


>gi|227329529|ref|ZP_03833553.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 205

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S   +         +      A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPATADSRVGEPEAEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + + +   AD   +IR ALRA
Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203


>gi|91978630|ref|YP_571289.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           BisB5]
 gi|123735096|sp|Q130V1|RUVA_RHOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91685086|gb|ABE41388.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris BisB5]
          Length = 205

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDYVILDVHGVGYQVHCSSRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDHEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK K  +LS+V    +             P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVSELKDKVPALSNVDPAVVQLSG--ALDDNRAPRPVTDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A  +Q+I+L L+ +S
Sbjct: 179 IAAAARAAGDDAATAQLIKLGLKELS 204


>gi|218768952|ref|YP_002343464.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis Z2491]
 gi|20455265|sp|Q9JSM5|RUVA_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121052960|emb|CAM09314.1| Holliday junction DNA helicase [Neisseria meningitidis Z2491]
 gi|254671573|emb|CBA09225.1| holliday junction DNA helicase [Neisseria meningitidis alpha153]
 gi|319411250|emb|CBY91657.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis WUE
           2594]
          Length = 194

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVAH---------AVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|197301661|ref|ZP_03166731.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC
           29176]
 gi|197299101|gb|EDY33631.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC
           29176]
          Length = 205

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + E   ++DV GV Y IY P + LS L  +G    +    ++R+D ++L
Sbjct: 1   MISYIRGELCDIEEQKAIVDVNGVGYGIYMPQQALSLLPPMGQQVKIHTYLNIREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL  V G+G +  + +LS ++  EL  +++  ++K I+  PGI  K 
Sbjct: 61  FGFLTKEDLNVFRLLIGVNGIGPKAGLNILSCLSPDELRFAVLSGDAKAISATPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178
           A +++ ELK K      +        +++ A      S      A+ AL  LGYG  ++ 
Sbjct: 121 AEKLILELKDKLNIEDMLEHAAHGGDSEDLASGTDTASNTMQAEAVQALTALGYGSAESL 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV    K     +    I++ AL+ +
Sbjct: 181 RAVK---KSSPECSSVEDILKEALKFL 204


>gi|261365694|ref|ZP_05978577.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996]
 gi|288565789|gb|EFC87349.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996]
          Length = 194

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGRLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS ++A EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S ++      +    ++           + ++ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVSHATADGLFAATPAADET---------DDIVNTLIALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +        +  + +RLAL+ +
Sbjct: 172 IKGI----PKGTEVGEGVRLALKNL 192


>gi|255066950|ref|ZP_05318805.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256]
 gi|255048775|gb|EET44239.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256]
          Length = 194

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS ++A EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S ++      +    ++           + ++ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVSHAAADGLFAAAPAADET---------DDIVNTLIALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +        +  + +RLAL+ +
Sbjct: 172 IKGI----PKGTEVGEGVRLALKNL 192


>gi|33594301|ref|NP_881945.1| Holliday junction DNA helicase motor protein [Bordetella pertussis
           Tohama I]
 gi|33602977|ref|NP_890537.1| Holliday junction DNA helicase motor protein [Bordetella
           bronchiseptica RB50]
 gi|44888431|sp|Q7VTT9|RUVA_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888438|sp|Q7WGB6|RUVA_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33564376|emb|CAE43681.1| holliday junction DNA helicase [Bordetella pertussis Tohama I]
 gi|33568608|emb|CAE34366.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50]
 gi|332383712|gb|AEE68559.1| Holliday junction DNA helicase RuvA [Bordetella pertussis CS]
          Length = 190

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV GV Y I  P+ TL  L + G   TLF    +R+D   L
Sbjct: 1   MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++  EL ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   +      + ++AL+ LGY   ++  A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAASGHQSDILNALLALGYSDKESQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LKK  +  D S+ IRLAL+A+
Sbjct: 168 ----LKKLPDGVDVSEGIRLALKAL 188


>gi|50121417|ref|YP_050584.1| Holliday junction DNA helicase RuvA [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644878|sp|Q6D4A1|RUVA_ERWCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49611943|emb|CAG75392.1| holliday junction DNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 205

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S   +         +      A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNSVSDIPLTSPANVDNRVGEPEAEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + + +   AD   +IR ALRA
Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203


>gi|85714394|ref|ZP_01045382.1| Holliday junction DNA helicase motor protein [Nitrobacter sp.
           Nb-311A]
 gi|85698841|gb|EAQ36710.1| Holliday junction DNA helicase motor protein [Nitrobacter sp.
           Nb-311A]
          Length = 205

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQSVQGVGARVA+ VL  ++  +L  ++ L++   +A+ PG+  K+
Sbjct: 61  FGFRTDHEREWFRLLQSVQGVGARVALAVLGTLSPADLASAVALRDKASVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA S ++V    +  V          P    +AISALVNLGYGQ QAT A
Sbjct: 121 AERIVTELKDKAPSFANVDPAVVHLVG--AVDDRRAPGPVTDAISALVNLGYGQPQATAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +     A+ +Q+IRL L+ ++
Sbjct: 179 IAAAARGAGENAETAQLIRLGLKELA 204


>gi|213963573|ref|ZP_03391826.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena
           Capno]
 gi|213953853|gb|EEB65182.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena
           Capno]
          Length = 194

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      +V+ID  GV Y +   + T S L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLIEKNPTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA  +  +II  +   I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLLSVSGVGASTARTMLSSLTAAHVRSAIINGDVATIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L             E+  I ++ +    A++AL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDF----------EEVSINTLNTNKEEALAALEVLGFVRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +++K         +II+ AL+ +
Sbjct: 170 VDTIVKLNNEELSVEEIIKQALKRL 194


>gi|323186363|gb|EFZ71713.1| holliday junction DNA helicase RuvA [Escherichia coli 1357]
          Length = 187

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 3/187 (1%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           LI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L  
Sbjct: 2   LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
             GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L  
Sbjct: 62  TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
            +    + +        +       A++ALV LGY   +A+  V  + + +   A    +
Sbjct: 122 DLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSETL 178

Query: 198 IRLALRA 204
           IR ALRA
Sbjct: 179 IREALRA 185


>gi|255320811|ref|ZP_05361986.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SK82]
 gi|262379413|ref|ZP_06072569.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SH164]
 gi|255302188|gb|EET81430.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SK82]
 gi|262298870|gb|EEY86783.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SH164]
          Length = 200

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + +IPG+  K 
Sbjct: 60  YGFSNAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDLNTLVKIPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+       + + + Q       S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKTLAQAATTSSTALPQIQF---IANSPIAEAEAALQSLGYKPQEAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V   + + ++ + +IR AL+++
Sbjct: 177 VAAV---KGDFSESADLIRAALKSM 198


>gi|56477680|ref|YP_159269.1| Holliday junction DNA helicase RuvA [Aromatoleum aromaticum EbN1]
 gi|81357290|sp|Q5P2U6|RUVA_AZOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56313723|emb|CAI08368.1| Holliday junction DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 199

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +++D  GV Y I  P+ T   L   G+  +LF    +R+D   L
Sbjct: 1   MIGRITGILLEKNPPQIVVDTHGVGYEIDVPMSTFYGLPATGESLSLFTHLAIREDGHFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++ ++L +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFASADERAAFRQLLKVSGIGARTALSVLSGLSVSDLAQAVALQETGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +              + ++AL+ LGY   +A +A
Sbjct: 121 AERLLLELRDKLGR-----ALPGFGASTVPGAAAQPADSRSDILNALLALGYSDKEAQSA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++          S  IR AL+ +S
Sbjct: 176 LKAI----PPETGVSDGIRQALKLLS 197


>gi|160896673|ref|YP_001562255.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1]
 gi|229560027|sp|A9BUG7|RUVA_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160362257|gb|ABX33870.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1]
          Length = 190

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G   +L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCGGVGYEVQVPMSTFYNLPASGAKVSLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++ LQ    + ++PGI  K 
Sbjct: 61  YGFGTHSERQAFRELIKITGIGPRMALSVLSGMSVEDLAQAVTLQEVGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  + +              A    + +   + + AL+ LGY    A  A
Sbjct: 121 AERLLLELKGKIGADTG-------------AQSLFVNNDQNDIVQALMALGYSDKDAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LKK       ++ I+LAL+A++
Sbjct: 168 ----LKKLPPDVGVTEGIKLALKALA 189


>gi|226945719|ref|YP_002800792.1| Holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ]
 gi|226720646|gb|ACO79817.1| holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ]
          Length = 204

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +      ++L++  GV Y +  P+ TL  L  + +  TL     +R+D   L+
Sbjct: 5   IGRLRGILVEKQPPHLLVEANGVGYEVEVPMTTLYRLPSLNEPVTLHTHLVVREDAHLLY 64

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +   + K + ++PG+  K A
Sbjct: 65  GFCERRERELFRELIRLNGVGPKLALALMSSLELDELVRCVQAGDIKALTRVPGVGKKTA 124

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK +  +  S+    ++ +  E      + S   +A+SALV LG+   +A+ AV
Sbjct: 125 ERLLIELKDRFKAWESLP--TVASLTLESNPDIGIASAESDALSALVALGFKPQEASRAV 182

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
            +V   ++      ++IR ALR ++
Sbjct: 183 AAV---QEEGLSSEELIRRALRGMA 204


>gi|281601276|gb|ADA74260.1| Holliday junction ATP-dependent DNA helicase ruvA [Shigella
           flexneri 2002017]
 gi|332766837|gb|EGJ97038.1| holliday junction DNA helicase RuvA [Shigella flexneri 2930-71]
          Length = 187

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           LI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L  
Sbjct: 2   LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
             GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L  
Sbjct: 62  TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
            +    + +        +       A++ALV LGY   +A+  V  + + +        +
Sbjct: 122 DLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---TSSETL 178

Query: 198 IRLALRA 204
           IR ALRA
Sbjct: 179 IREALRA 185


>gi|88811437|ref|ZP_01126692.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis
           Nb-231]
 gi|88791326|gb|EAR22438.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis
           Nb-231]
          Length = 203

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LIDVQGV Y +  P+ T   L   G+  TL     +++D   L
Sbjct: 1   MIGRLRGILLEKQPPRLLIDVQGVGYEVEAPMSTFYELPAQGEAITLRTHLAIKEDGHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R  F  L  V GVG ++A+  LS +   E +  +  +++  + ++PG+  K 
Sbjct: 61  YGFHTEQERALFRSLIRVSGVGPKMALAFLSGMRTEEFLWCVRQRDTAALIRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +  +L++   Q  +      +           A+SAL+ LGY   +A   
Sbjct: 121 AERLIVEMQDRLSALAT---QASTAAGASFSAAGGANEAFTEAMSALLALGYKTPEAQQL 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  + + E       ++IRLALR 
Sbjct: 178 LAGLAEAE---LSSEELIRLALRK 198


>gi|261343863|ref|ZP_05971508.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM
           4541]
 gi|282568250|gb|EFB73785.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM
           4541]
          Length = 205

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L  IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPDIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +   +S ++    ++   S       A +AL+ LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNPISDIDLPSVKSKGPSQADIEAEAAAALIALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K +   +D   +IR ALRA
Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203


>gi|305665237|ref|YP_003861524.1| Holliday junction DNA helicase motor protein [Maribacter sp.
           HTCC2170]
 gi|88709990|gb|EAR02222.1| Holliday junction DNA helicase motor protein [Maribacter sp.
           HTCC2170]
          Length = 193

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      +V+I+  GV Y +   + T S L  + +  +L+    +++D   L
Sbjct: 1   MITHLKGKLVEKNPTHVIIECAGVGYFVNISLHTFSNLKDV-ENISLYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+G+  A  +LS ++  ++ ++I   +   I  I GI  K 
Sbjct: 60  FGFAEKSEREIFRLLLSVSGIGSSTARTMLSSLSPAQIRDAIANGDVATIQGIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ K + +  +          ++  + S  +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLRDKILKVYDI----------DEVSLSSNNTNKEEALSALEVLGFARRQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL ++ ++     II+ AL+ +
Sbjct: 170 VDKVLSQDSSL-SVENIIKHALKNL 193


>gi|153855299|ref|ZP_01996465.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814]
 gi|149752298|gb|EDM62229.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814]
          Length = 204

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +EG+ ED V++DV GV Y IY     +  L  +G    +    H+++D ++L
Sbjct: 1   MITYIRGILEGMEEDKVIVDVGGVGYGIYMAGTAMGRLPALGKEVKIHTHLHVKEDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F LL  V G+G +  +G+LS +   +L  ++   + K I   PGI  K 
Sbjct: 61  YGFLTRDELRVFRLLIGVSGIGPKGGLGILSALGPDDLRFAVASNDVKAIQAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K     ++     +  N               A+ ALV LGYG  +A  A
Sbjct: 121 AEKLILELKDKLKLEDALENAANAVQNTADTSAGMANEMTGEAVQALVALGYGNTEALKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V   E+       ++R +L+ +
Sbjct: 181 VRQVEITEE--MSVEDVLRQSLKYM 203


>gi|253997451|ref|YP_003049515.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8]
 gi|253984130|gb|ACT48988.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8]
          Length = 192

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +LID  GV Y    P+ T   L  IGD   +     +R+D   L
Sbjct: 1   MIGRLSGTLLEKTPPLILIDCNGVGYECEVPMSTFYNLPAIGDKVVMLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GA+ A+ +LS ++  +LV+++ LQ   ++ ++PG+  K 
Sbjct: 61  YGFGTSQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVALQEPSMLTRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K           ++ +N+ Q       S   + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKDKF------TIDGVAAMNEPQTK-----SATSDVLNALLALGYNEREAVAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +L KE ++ D    I+ AL+ +S
Sbjct: 170 V-KLLDKEISVTDG---IKQALKLLS 191


>gi|294141122|ref|YP_003557100.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12]
 gi|293327591|dbj|BAJ02322.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12]
          Length = 205

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGLLIEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +T+ E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTSAEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +         + +   +AI+ L+ LGY   QA+
Sbjct: 121 AERLLIEMRDKLKSLMEASAGSEREFMLKTNYTPTKIVNTAEEDAIAVLLALGYKSAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K   +     ++I+ +L+++
Sbjct: 181 KSVSAAYK---DGMTSEELIKSSLKSM 204


>gi|237746839|ref|ZP_04577319.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes
           HOxBLS]
 gi|229378190|gb|EEO28281.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes
           HOxBLS]
          Length = 193

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D QGV Y I  P+ T   L  +G+  TLF    +R+D   L
Sbjct: 1   MIGRIHGTLLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGENVTLFTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + G+GAR+A+ +LS ++  E+ +++ LQ++  + +IPGI  K 
Sbjct: 61  YGFGSLDERTLFRQLVRITGIGARIALALLSGLSVAEMAQAVALQDATRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  S S              A          +  +AL+ LGY + +  TA
Sbjct: 121 AERLLLELKGKFDSASLT-----------AAPSAVSNDSMTDIQNALLALGYSEKETLTA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +        + S  I++AL+ +S
Sbjct: 170 IKQI----PADCNVSDGIKMALKTLS 191


>gi|238898994|ref|YP_002924676.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259495647|sp|C4K7I5|RUVA_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229466754|gb|ACQ68528.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 204

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 107/205 (52%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG I      ++L+D+QG+ Y I  P+     L ++G    +F    +R+D   L
Sbjct: 1   MISRMKGIILEKQPPWILLDIQGMGYDIQLPMTCFYQLPELGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++ + +LS +++ E + ++  ++   + ++PG+  K 
Sbjct: 61  YGFHHPKERAMFSELIKVNGVGPKLGLAILSGMSSEEFICALEKEDISNLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +  +L+ ++ +     +    +   S  S    AISAL++LGY   +A  
Sbjct: 121 AERLLVEMKDRIKNLNKNLFKSTADHMLSSVSTDLSAKSAEAEAISALISLGYKPQEAAQ 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            + ++ + +    D   +I+ ALR+
Sbjct: 181 LIKNIAQPD---LDSQALIKHALRS 202


>gi|317048520|ref|YP_004116168.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b]
 gi|316950137|gb|ADU69612.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b]
          Length = 204

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VLI+  GV Y ++ P+     L ++     +F +  +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLIEAHGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +   V+ ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAVLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D +      +           A++ALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDNAFTLTTPSAAPENNDAEAEAVAALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + + +   AD   +IR ALRA
Sbjct: 181 MVSKIGRPD---ADCETLIREALRA 202


>gi|291612984|ref|YP_003523141.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus
           ES-1]
 gi|291583096|gb|ADE10754.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus
           ES-1]
          Length = 192

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DVQGV Y +  P+ T   L  + +   L  +  +R+D   L
Sbjct: 1   MIGRLSGTLLEKNPPQIVLDVQGVGYEVDVPMSTFYNLPALHEKVVLHTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R  F  L  + GVG ++A+ VLS ++  +L  ++  +++  + +IPG+  K 
Sbjct: 61  FGFLTHEERVAFRQLLKISGVGPKLALSVLSGLSLADLALAVANKDASRLTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK     +                 S+PS + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELQGKFAVAGAGAM------------AGSVPSSSSDIVNALLGLGYNEKEADWA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
                K+    A  +  IR AL+ +S
Sbjct: 169 ----AKQLPKEAGVADGIRQALKLLS 190


>gi|332285258|ref|YP_004417169.1| Holliday junction DNA helicase motor protein [Pusillimonas sp.
           T7-7]
 gi|330429211|gb|AEC20545.1| Holliday junction DNA helicase motor protein [Pusillimonas sp.
           T7-7]
          Length = 192

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV GV Y I  P+ TL  L   G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKTPPIVCVDVGGVGYEIDVPMSTLYDLPDNGATITLYTHLAVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R  F  L  V G+GAR A+ VLS ++  EL  +I  Q + ++ ++PGI  K 
Sbjct: 61  YGFLSSKERSAFRALIKVTGIGARTALAVLSGMSVDELANAITQQETGLLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK                       ++ +   + ++AL++LGY   +   A
Sbjct: 121 AERLLLELRGKLG-------------GDLAHGAGTVAAGRDDILNALLSLGYSNSETQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK      D ++ IRLAL++++
Sbjct: 168 ----LKNLPEGVDVAEGIRLALKSLA 189


>gi|190575569|ref|YP_001973414.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia
           K279a]
 gi|254522833|ref|ZP_05134888.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14]
 gi|229560132|sp|B2FRN6|RUVA_STRMK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190013491|emb|CAQ47126.1| putative Holliday junction DNA helicase [Stenotrophomonas
           maltophilia K279a]
 gi|219720424|gb|EED38949.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14]
          Length = 197

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L ++G   TL+     ++D + L
Sbjct: 1   MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    +   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A           +          +      +A  AL  LGY   +A   
Sbjct: 121 AERMVLELRDRAAQFG-------AGGALPTGSGPAPADPLSDATVALQQLGYKPAEAARM 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A    +IR AL++
Sbjct: 174 ARDAFNEGDEVA---TVIRKALQS 194


>gi|227823320|ref|YP_002827292.1| Holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234]
 gi|254767382|sp|C3MIH6|RUVA_RHISN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|227342321|gb|ACP26539.1| holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234]
          Length = 205

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+V++DV GV Y+ YC  RTL+ LG  G+   LF+ET++R+DQ+RL
Sbjct: 1   MIGKLKGTIDEIGEDFVVLDVHGVGYVAYCSARTLAKLGSAGEAAVLFIETYVREDQLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQ+VQGVG++VA+ +L+ +T  EL  +I LQ+   +A+ PG+  K+
Sbjct: 61  FGFLSALEREWFRLLQTVQGVGSKVALALLTTLTPGELANAIALQDKTSVARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +  +   +    +    + + P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRIVTELKNKAPAFAGEMSASIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL L+ ++
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELA 204


>gi|33598084|ref|NP_885727.1| Holliday junction DNA helicase motor protein [Bordetella
           parapertussis 12822]
 gi|44888435|sp|Q7W4T9|RUVA_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33566642|emb|CAE38852.1| holliday junction DNA helicase [Bordetella parapertussis]
          Length = 190

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV GV Y I  P+ TL  L + G   TLF    +R+D   L
Sbjct: 1   MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++  EL ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   +      + ++AL+ LGY   ++  A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAAGGHQSDILNALLALGYSDKESQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LKK     D S+ IRLAL+A+
Sbjct: 168 ----LKKLPEGVDVSEGIRLALKAL 188


>gi|90426276|ref|YP_534646.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           BisB18]
 gi|122995259|sp|Q20X09|RUVA_RHOPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90108290|gb|ABD90327.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris BisB18]
          Length = 205

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 135/206 (65%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L + G    L +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDYVILDVQGVGYQVHCSARTLQALPQAGGAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS +   +L  +I L++   +A+  G+  K+
Sbjct: 61  FGFRSDLEREWFRLLQTVQGVGAKVALAVLSTLPPADLANAIALRDKAAVARTSGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +SV    ++          S P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFASVDPAVVALSG--ALDERSAPRPVTDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S  +     A+ +Q+I+L L+ +S
Sbjct: 179 IASASRSAGEGAETAQLIKLGLKELS 204


>gi|239628227|ref|ZP_04671258.1| holliday junction DNA helicase RuvA [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518373|gb|EEQ58239.1| holliday junction DNA helicase RuvA [Clostridiales bacterium
           1_7_47FAA]
          Length = 209

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G+ ED ++++   V   I  P      L ++G+  T++    +R+D + L
Sbjct: 1   MISYVKGPLMGIDEDSIIVEAGNVGLAIRVPASLQPELPRLGEEVTIYTYFQVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   DR  F  L  V G+G + A+G+LS +   +L  +I+ ++ K +A+ PGI  K 
Sbjct: 61  YGFLHSQDRDMFRQLIGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120

Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ +LK K      L S+     S V    A +  +   A  A+ ALV LGY   +A
Sbjct: 121 AQRLILDLKDKISMDDVLGSMALSGDSGVGPAAASMAGLAEAAKEAVQALVALGYTNTEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + AV  V   E        +++ +L+ +S
Sbjct: 181 SRAVKQVEVAEG--MTSEDVLKASLKHLS 207


>gi|182677007|ref|YP_001831153.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|229560003|sp|B2IAW4|RUVA_BEII9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|182632890|gb|ACB93664.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 205

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 129/206 (62%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   ED+V++DVQGV YI++C  RTL  L K G    L +E  +R+D IRL
Sbjct: 1   MIGKLTGLVDSQGEDHVILDVQGVGYIVFCSSRTLRLLPKPGASTALLIEMQVREDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+++R WF LLQSVQGVGA+VA+ +   ++ATEL ++I LQ+   + + PG+  K+
Sbjct: 61  FGFPSEVERDWFRLLQSVQGVGAKVALALQGLLSATELAQAIALQDKASLGRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++TELK K  +L  V          E       P  A +AI+ALVNLGYG+ QA  A
Sbjct: 121 AARLITELKDKMPALGPVDSLTAKLTIAEAEGTA--PVAAQDAITALVNLGYGRPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + L+     A  + +IR  L+ ++
Sbjct: 179 VATSLEALGETAPLADLIRRGLKELA 204


>gi|13473339|ref|NP_104906.1| Holliday junction DNA helicase RuvA [Mesorhizobium loti MAFF303099]
 gi|20455256|sp|Q98F75|RUVA_RHILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|14024088|dbj|BAB50692.1| Holliday branch migration protein; RuvA [Mesorhizobium loti
           MAFF303099]
          Length = 206

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 133/207 (64%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ L+D+ GV Y+ YC  RTL+ L   G+   LF+ET++R+D +RL
Sbjct: 1   MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R+WF LL  +V GVGA+VA+ +LS +   +L  +I L++  ++++ PG+  K
Sbjct: 61  YGFQSALEREWFRLLLNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    K++      P+   +A+SALVNLGY +D A  
Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGL--KQELGEGVAPAPITDAVSALVNLGYSRDTAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD S++IR  L+ ++
Sbjct: 179 AVAAALKTAGEDADASKLIRFGLKELA 205


>gi|332878178|ref|ZP_08445907.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683916|gb|EGJ56784.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 194

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V+ID QGV Y +   + T + L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLVEKNPTNVVIDCQGVGYFVNISLNTYAALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA ++  +I+      I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLISVSGVGAGTARTMLSSLTAAQVRNAIVNGEVATIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L               A I ++ +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDFAD----------APISAVSTHKEEALSALEVLGFVRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +++   +      II+ AL+++
Sbjct: 170 VDKIVQAAPDSLSVEDIIKQALKSL 194


>gi|294789135|ref|ZP_06754374.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC
           29453]
 gi|294482876|gb|EFG30564.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC
           29453]
          Length = 195

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       ++IDV GV Y +   ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLRGTLIDKTPPQIVIDVNGVGYEVDVSMQTFYALPALGETVQLYTQLAVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS ++  +L  +I  ++ K ++  P +  K 
Sbjct: 61  FGFADLAERATFRQLVKVSGIGAKTALGILSALSPDDLAAAIASEDVKKLSSAPSVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK     S+          +  H  +    + + +S L+ LGY + ++  A
Sbjct: 121 AERMILELRGKLTVSGSL--------KDDLLHATASVDNSEDVVSTLLALGYNEKESRLA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +        D S+ ++LAL+ +
Sbjct: 173 VKGLAAD----VDVSEGVKLALKNL 193


>gi|158422139|ref|YP_001523431.1| Holliday junction DNA helicase RuvA [Azorhizobium caulinodans ORS
           571]
 gi|172048036|sp|A8IM99|RUVA_AZOC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158329028|dbj|BAF86513.1| DNA recombination protein [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 78/206 (37%), Positives = 135/206 (65%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED++++DV GV Y+++C  RTL  L ++G+   LF+ETH+R+DQIRL
Sbjct: 1   MIGKLKGTVDSFGEDHLILDVHGVGYLVHCSGRTLQALPRVGEAAVLFIETHVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+++ +R+WF LLQ +QG+G + A+ +LS +  ++L +++ L +   +A+  G+  ++
Sbjct: 61  FGFVTEAEREWFRLLQGIQGIGTKTALAILSTLKPSDLAQAVALGDKTALARANGVGPRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+TELK K  + ++     ++ +  +     +      +A+SALVNLGYGQ QA TA
Sbjct: 121 ATRIVTELKDKVPAFTAADP-GLARLAADVEATEAAGGALADAVSALVNLGYGQAQAHTA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +K    A    +IRL L+ ++
Sbjct: 180 IAAAGRKAGEDATTETLIRLGLKELA 205


>gi|319941758|ref|ZP_08016080.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis
           3_1_45B]
 gi|319804691|gb|EFW01558.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis
           3_1_45B]
          Length = 193

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +LIDV GV Y +  P+ T   L ++G   TL     +R+D   L
Sbjct: 1   MIGRLHGKLLEKNPPQILIDVSGVGYEVDVPMSTFCNLPEVGGELTLHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG ++A+ +LS IT  +L +++    + ++ ++PGI  K 
Sbjct: 61  YGFATLAERAVFRALIKISGVGPKIALALLSGITVDQLKDAVDRGETGLLTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK     +             A          +  +AL+ LGY + +A  A
Sbjct: 121 AERLVLELKGKLAGTGAATA----------AAAVPTSGARADVAAALIALGYSEREAAAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                KK       +  +RLAL+++
Sbjct: 171 ----TKKLPEDCTVNDGLRLALKSL 191


>gi|167759024|ref|ZP_02431151.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704]
 gi|167663431|gb|EDS07561.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704]
          Length = 203

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +E L ED V+IDV G+ Y ++   + +  L  IG    +    ++++D ++L
Sbjct: 1   MISYLKGTLEALEEDKVVIDVGGIGYGVFMSGQAMGLLPSIGKEVKIHTYLNIKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F LL  V G+G +  +GVLS ++  EL  +++  + K I Q PGI  K 
Sbjct: 61  YGFLTKDDLEVFKLLIGVNGIGPKGGLGVLSALSPDELRFAVMSNDVKAICQAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ EL+ K     ++  + ++  N+ Q           NA+ AL  LGYG  +A  A
Sbjct: 121 AEKLILELRDKLRLEDAL--EHLASENEVQGAAAYQGEVQSNAVQALAALGYGSTEALKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V   E    +  ++++ AL+ +
Sbjct: 179 VRQVDITEN--MEVEEVLKQALKLM 201


>gi|120434550|ref|YP_860244.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella
           forsetii KT0803]
 gi|166230555|sp|A0LXS4|RUVA_GRAFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117576700|emb|CAL65169.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella
           forsetii KT0803]
          Length = 193

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      YV+I+  G+ Y I   + T S +    +  +++    +++D   L
Sbjct: 1   MIHHLKGQLIEKNPTYVVIECNGIGYYINISLHTFSLIPDS-EAVSVYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F LL SV GVG   A  +LS +   E+ E+I  ++   I  + GI  K 
Sbjct: 60  YGFAEKSEREIFRLLISVSGVGTSTARMMLSSLQPREVTEAIASEDVATIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +          +  ++  +    +    A+SAL  LGY + QA   
Sbjct: 120 AQRVILDLKDKVLKV----------LGDDEVFVSQSNTNKEEALSALEILGYNRRQAGKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK++   +    II++AL+ +
Sbjct: 170 VEKILKEDPE-STVESIIKMALKKL 193


>gi|118581082|ref|YP_902332.1| Holliday junction DNA helicase RuvA [Pelobacter propionicus DSM
           2379]
 gi|166230581|sp|A1ASF4|RUVA_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118503792|gb|ABL00275.1| Holliday junction DNA helicase subunit RuvA [Pelobacter propionicus
           DSM 2379]
          Length = 198

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D++++DV GV Y +  P  T   L + G   +L + T +R+D I+L
Sbjct: 1   MIALLTGQIAQKSPDHIILDVNGVGYRVQIPFSTYYDLPEEG-TVSLHIHTSVREDAIQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L++ +F LL SV GVG R+A  +LS I   +L +++   + ++++ +PGI  K 
Sbjct: 60  YGFRTSLEKSFFQLLLSVSGVGPRLARDILSNIQPAQLAQALGQGDIRMLSAVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L      D+S V   +           + +SAL+NLGY + Q    
Sbjct: 120 AERLVLELKEKVGKL------DLSSVVVPEPRQMPEDDLLEDVVSALLNLGYKEPQVRKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +     + A    +++ AL+++
Sbjct: 174 LAGLNP--GSDASLEGVLKQALKSL 196


>gi|241760730|ref|ZP_04758822.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114]
 gi|241318911|gb|EER55437.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114]
          Length = 194

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGEAVHLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL ++I  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S +         V+       ++   + + I+ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVSHT---------VSDGLFAPDAVADESQDIINTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 172 AKGI----PKGTEVGEGVRLALKNL 192


>gi|270262223|ref|ZP_06190495.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia
           odorifera 4Rx13]
 gi|270044099|gb|EFA17191.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia
           odorifera 4Rx13]
          Length = 204

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L  +G    +F +  +R+D   L
Sbjct: 1   MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPDLGQEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + S +     A   +       A SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPASATQAAELDAEAEAASALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 181 MVSKIAK---PGADCETLIRDALRA 202


>gi|300023944|ref|YP_003756555.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525765|gb|ADJ24234.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 205

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + E ++++DV GV Y +    RTL  L K GD  TL ++TH+R+D IRL
Sbjct: 1   MIGKLKGKVDAIGESFLIVDVHGVGYEVQASSRTLRNL-KPGDDVTLTIDTHVREDAIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ +R WF  LQ++QGVGA+VA+ VL  +   E+  +++L N   + + PG+  K+
Sbjct: 60  FGFQSEFERSWFRTLQTIQGVGAKVALSVLGVLGPQEIANAVVLGNWAAVEEAPGVGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA SLS +     +      A +  +   A  AISAL NLGY   QA  A
Sbjct: 120 ALRIVAELKDKAPSLS-LAGLPATPGGGPAAAVAPVGLPAAEAISALTNLGYNPAQANQA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    ++    AD + +I+ AL+ ++
Sbjct: 179 VALASRELGEAADTAALIKRALKELA 204


>gi|221134420|ref|ZP_03560725.1| Holliday junction DNA helicase RuvA [Glaciecola sp. HTCC2999]
          Length = 207

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I G +       ++I   G+ Y +   + ++  L   G   T+F    +R+D   L
Sbjct: 1   MIGLITGTLLAKQPPEIMIQAGGIGYEVSMSMHSIYALPTEGQPVTVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R  F  L    GVG ++A+ +LS ++  +L+ ++  ++   + +IPG+  K 
Sbjct: 61  FGFIEKEERTVFRELIKANGVGPKLAITILSGMSVQDLIRAVGYEDVSSLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM----SCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ELK +   L+     +          + + I  +      A+SALV LGY    
Sbjct: 121 AERLVVELKDRLAKLTLTQPNEALTLPVVSATDGSTIIPINDTREEALSALVALGYKAPV 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + SV     +     Q+IR AL+A+
Sbjct: 181 ASKIIQSVY---DDTMSSEQLIRAALKAM 206


>gi|147677361|ref|YP_001211576.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273458|dbj|BAF59207.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 211

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +    V++DV G+ Y +  P+  L+ L   G+   L+    +R++   L
Sbjct: 16  MISYIKGKLAEVQAGAVVLDVGGIGYRVQVPLSVLNKLPARGEDVLLYTHLAVREEGFFL 75

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +  +F+ L  V G+G +VA+ +L+  +  EL   II  ++  + ++PG+  K 
Sbjct: 76  YGFSDQNELGFFLKLLGVSGIGPKVALAILTIFSPDELGRIIIGGDTAALTRVPGVGKKT 135

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                 E+  +        +A+ AL  LGY   +A  A
Sbjct: 136 AGRIILELKDKVTE-----------TTLEREPLSGRSGVEADAVEALEALGYTAAEALKA 184

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VLK        ++I+R ALR +
Sbjct: 185 VKEVLK-GPGQPSAAEIVREALRLL 208


>gi|317131997|ref|YP_004091311.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense
           YUAN-3]
 gi|315469976|gb|ADU26580.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense
           YUAN-3]
          Length = 199

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 9/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +        +I   GV +       TL  L   G+   L+   ++R+D + L
Sbjct: 1   MIYSLKGTLTHTGPGMAVISCGGVGFKCLTTANTLGALPPPGEEAFLYTHLNVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F +L  V GVG + A+ +LS  T  +   S+   ++K + + PGI  KI
Sbjct: 61  YGFGSEEELHCFRMLIGVSGVGPKAALSILSGTTPAQFAFSVASGDAKALTRAPGIGSKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        +Q  +               A  A+SALV LGY   +A  A
Sbjct: 121 AQRIVLELKDKING-----EQAAANFTGGTPVPAVSGGSAAEAVSALVVLGYSGTEAQGA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V      +        IIR ALR ++ 
Sbjct: 176 VNRCDPAQ----SVEDIIRQALRLLAS 198


>gi|261821379|ref|YP_003259485.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae
           WPP163]
 gi|261605392|gb|ACX87878.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae
           WPP163]
          Length = 205

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S   +    +    +    + A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPASADSRVGEPEVEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + + +   AD   +IR ALRA
Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203


>gi|78221965|ref|YP_383712.1| Holliday junction DNA helicase RuvA [Geobacter metallireducens
           GS-15]
 gi|123729330|sp|Q39XN7|RUVA_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78193220|gb|ABB30987.1| Holliday junction DNA helicase subunit RuvA [Geobacter
           metallireducens GS-15]
          Length = 199

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D ++IDV GV Y +  P  T   L   G   +L + TH+++D I L
Sbjct: 1   MIARLTGMLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPDEGKTVSLSIYTHVKEDAISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++++F +L SV G+G ++A  +LS I   EL  +I+  N   ++ IPGI  K 
Sbjct: 61  FGFRTVAEKEFFQVLISVSGIGPKMARDILSNIQPDELAGAILQGNLVRLSSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +      D++   KE A   + P  A +  SALVNLGY +      
Sbjct: 121 AERLVLELKEKVRKM------DVAPSTKEAAPSEAPPEVADDVASALVNLGYKEAVVRKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  +  + A    ++R AL+ +
Sbjct: 175 LAEMAIE--SGASTEAVLRQALKIL 197


>gi|82703833|ref|YP_413399.1| Holliday junction DNA helicase RuvA [Nitrosospira multiformis ATCC
           25196]
 gi|123740585|sp|Q2Y5G4|RUVA_NITMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|82411898|gb|ABB76007.1| Holliday junction DNA helicase subunit RuvA [Nitrosospira
           multiformis ATCC 25196]
          Length = 197

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   VL+DVQGV Y I  P+ T   L  +G   TL     +R+D   L
Sbjct: 1   MIGRISGLLLEKFPPLVLVDVQGVGYEIDVPMSTFYNLPAVGTQITLHTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L  + GVGAR A+ +LS ++  +L +++  Q+   + +IPGI  K 
Sbjct: 61  FGFATEGERQAFRQLVKISGVGARTALALLSGLSVADLHQTVSNQDPARLIRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     S +           A      +   + ++AL++LGY   +A  A
Sbjct: 121 AERLLLELRDKLDLGVSAIPG--------AAGARRPSTMGSDVLNALLSLGYNDREANWA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +          S  IR AL+ +S
Sbjct: 173 VSQLSVDL----SVSDGIRQALKFLS 194


>gi|153008543|ref|YP_001369758.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC
           49188]
 gi|166230577|sp|A6WY75|RUVA_OCHA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151560431|gb|ABS13929.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC
           49188]
          Length = 205

 Score =  233 bits (596), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG +G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGVGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204


>gi|325286780|ref|YP_004262570.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga
           lytica DSM 7489]
 gi|324322234|gb|ADY29699.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga
           lytica DSM 7489]
          Length = 193

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      +++I+  GV Y +   + TLS +    +   L+    +++D   L
Sbjct: 1   MITHLRGKLVEKNPTFLVIECNGVGYFVNISLHTLSKVSDA-ENIQLYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+G  +A  +LS ++  ++ ++I   +   I  + GI  K 
Sbjct: 60  FGFAEKSEREIFRLLISVSGIGPSIARTMLSSLSPAQVRDAIAGGDVATIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  +          ++    S  +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLKDKVLKIYDI----------DEVSTSSNNTNKEEALSALEVLGFARKQAEKT 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V+ ++  +     II+LAL+ +
Sbjct: 170 VDVVVSQDPTL-SVENIIKLALKNL 193


>gi|319781019|ref|YP_004140495.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166907|gb|ADV10445.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 206

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 83/207 (40%), Positives = 131/207 (63%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ L+D+ GV Y+ YC  RTL+ L   G+   LF+ET++R+D +RL
Sbjct: 1   MIGKLKGTLDEVDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R+WF LL  +V GVGA+VA+ +LS +   +L  +I L++  ++++ PG+  K
Sbjct: 61  YGFQSVLEREWFRLLMNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    +    + S P    +A+SALVNLGY +D A  
Sbjct: 121 VAERIVTELKNKAPAYAGTASGTIGLKQELGDGVASAP--ITDAVSALVNLGYSRDTAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD  ++IR  L+ ++
Sbjct: 179 AVAAALKTAGEDADAPKLIRFGLKELA 205


>gi|77163677|ref|YP_342202.1| DNA recombination protein, RuvA [Nitrosococcus oceani ATCC 19707]
 gi|254435109|ref|ZP_05048616.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27]
 gi|90135436|sp|Q3JES4|RUVA_NITOC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76881991|gb|ABA56672.1| Holliday junction DNA helicase subunit RuvA [Nitrosococcus oceani
           ATCC 19707]
 gi|207088220|gb|EDZ65492.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27]
          Length = 199

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L+DVQGV Y +  P+ T   L  +G    L+    +R D   L
Sbjct: 1   MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F S+ +R  F  L  V GVGA++ +G+LS I A      +   ++  + ++PG+  K 
Sbjct: 61  YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ + + +       M    +      S P     A+SALV LGY  ++A+ A
Sbjct: 121 AERLIVEMRDRLLDMPESGVAGM----RPDRVDGSAPGTVAEAVSALVALGYKPNEASRA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +   +       +IIR AL+ +
Sbjct: 177 VRRL---DTEALTTEEIIRQALQRM 198


>gi|307944538|ref|ZP_07659878.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4]
 gi|307772287|gb|EFO31508.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4]
          Length = 205

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+    D+V+IDV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTIDSYGGDHVIIDVHGVGYQVHCPSRILQSLPRAGEAAVLFIETVVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + +R+WF LL +VQGVGA+VA+G+L  + A+E+  +I L +   I + PG+  ++
Sbjct: 61  FGFGDEAEREWFRLLTTVQGVGAKVALGILGILKASEIANAIALSDKATITRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK KA S +SV    ++        + + P     A+SAL NLGYGQ QA  A
Sbjct: 121 AERILSELKDKAPSYASVDDATVAVSQSVSDDVAARP--VAEAVSALTNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   ++     A    +IRL L+ ++
Sbjct: 179 VARAVQSAGEDATTETLIRLGLKELA 204


>gi|295132466|ref|YP_003583142.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia
           profunda SM-A87]
 gi|294980481|gb|ADF50946.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia
           profunda SM-A87]
          Length = 193

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      YV++D  GV Y ++  + T S + K  +   +F    +++D   L
Sbjct: 1   MIHHLKGKLVEKNPTYVVVDCNGVGYFVHISLNTFSKI-KDEEQIAIFTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+GA  A  +LS +  T++ ++I   +   I  I GI  K 
Sbjct: 60  FGFQEKSEREIFRLLISVSGIGASTARTMLSSLDPTQIRDAIASGDVATIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  +          ++  +    +    A+SAL  LGY + QA   
Sbjct: 120 AQRVILDLKDKIVKIFGI----------DEVFVEQSNTIKEEALSALETLGYARKQADKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++K+ ++      +I+LAL+ +
Sbjct: 170 LNKLIKEIED-PTVETLIKLALKNL 193


>gi|319638740|ref|ZP_07993499.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa
           C102]
 gi|317399981|gb|EFV80643.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa
           C102]
          Length = 194

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK IS +         V+       ++   + + I+ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLISHT---------VSDGLFAPDAVADKSQDIINTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192


>gi|187479251|ref|YP_787276.1| Holliday junction DNA helicase RuvA [Bordetella avium 197N]
 gi|123765963|sp|Q2KVY6|RUVA_BORA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115423838|emb|CAJ50389.1| holliday junction DNA helicase [Bordetella avium 197N]
          Length = 190

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV G+ Y I  P+ TL  L   G   TLF    +R+D   L
Sbjct: 1   MIGRITGTLIEKTPPVVYVDVNGIGYEIDVPMSTLYALPDTGARVTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++  EL ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFGTASERAAFRELVKVSGIGARTALAVLSGMSVAELAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   ++P    + ++AL+ LGY + ++  A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAVPDSQSDILNALLALGYSEKESLAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK        S  IR AL+A++
Sbjct: 168 ----LKTLPEGLGVSDGIRQALKALA 189


>gi|163869137|ref|YP_001610376.1| Holliday junction DNA helicase RuvA [Bartonella tribocorum CIP
           105476]
 gi|189045742|sp|A9IYK7|RUVA_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161018823|emb|CAK02381.1| holliday junction DNA helicase RuvA [Bartonella tribocorum CIP
           105476]
          Length = 204

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 131/208 (62%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E ++EDY+++DV GV Y+++   R    L  +G+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGTLEHIFEDYIVLDVHGVGYVVFISNRLRPSLPSVGEALSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF +LQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFATRAEQEWFCMLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI+ ELK K +      +Q +  V+  Q  I   P+   +A+SAL+ LG+ ++QA  A
Sbjct: 121 SERIVGELKSKTLPF----EQAVKTVSVPQREITHQPAH--DALSALMKLGFEREQAARA 174

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207
           +   +   E      + +IR +L+ +S 
Sbjct: 175 LALAMNALEGEAVSSALLIRHSLKLLSS 202


>gi|39996178|ref|NP_952129.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA]
 gi|81702836|sp|Q74E87|RUVA_GEOSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|39982943|gb|AAR34402.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA]
 gi|298505192|gb|ADI83915.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens
           KN400]
          Length = 199

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D ++IDV GV Y +  P  T   L + G   +L + TH+++D I L
Sbjct: 1   MIALLTGRLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPEEGKTVSLSIHTHVKEDSISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++++F LL SV G+G ++A  +LS I   EL  +I+  N   ++ IPGI  K 
Sbjct: 61  FGFRTLAEKEFFQLLISVSGIGPKMARDILSNIQPEELAAAIVQGNLVRLSSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +      D++   +E     +    A +  SALVNLGY +      
Sbjct: 121 AERLVLELKEKVRKM------DVAPSAQEAPSSEAPAEVADDVASALVNLGYKEAVVRKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  +    A    ++R AL+ +
Sbjct: 175 LAEMSIE--PDASTEAVLRQALKVL 197


>gi|240851225|ref|YP_002972628.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup]
 gi|240268348|gb|ACS51936.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup]
          Length = 204

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 132/208 (63%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++L+DV GV Y+++   R    L  +G+  +LFVETH+R+D IRL
Sbjct: 1   MIGKLKGTLEHIFDDHILLDVHGVGYVVFVSNRLRPSLPSVGEALSLFVETHVREDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFATRAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI+ ELK K +      +Q +  V+  Q  + + P+   +A+SAL+ LG+ ++ A+ A
Sbjct: 121 SERIVGELKSKTLPF----EQAVKTVSVPQREMTNQPAH--DALSALMKLGFEREHASRA 174

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207
           +   +   E      + +IR +L+ +S 
Sbjct: 175 LALAMNALEGETVSSALLIRHSLKLLSS 202


>gi|332716453|ref|YP_004443919.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium
           sp. H13-3]
 gi|325063138|gb|ADY66828.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium
           sp. H13-3]
          Length = 205

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG IE +  DYVL+DV GVCY+ YC  RTLS +G  G+   LF+ET++R+DQ+RL
Sbjct: 1   MIGKLKGTIEEIGTDYVLVDVHGVCYVAYCSARTLSKIGSAGEAVVLFIETYVREDQLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQSVQGVG++VA+ VLS ++ +EL  +I LQ+  +I++ PG+  K+
Sbjct: 61  FGFLSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKVMISRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TEL+ KA + +      +    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRLVTELRNKAPAFAGEASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL LR +S
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLRELS 204


>gi|238021644|ref|ZP_04602070.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147]
 gi|237866258|gb|EEP67300.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147]
          Length = 195

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +   +   + IDV G+ Y +   ++T   L  IGD   ++ +  +R+D   L
Sbjct: 1   MITHLTGKLAEKHPPQITIDVNGIGYELEVSMQTFYQLPNIGDSLHIYTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS  +A EL  +I  ++ K ++  PGI  K 
Sbjct: 61  FGFAGKAERATFRQLVKVSGIGAKTALGILSAFSADELAAAIAQEDIKRLSAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK    S       +            P  + + IS L+ LGY + +A  A
Sbjct: 121 AERMILELRGKLAPTSGEATGLFAP--------AVTPDASEDIISTLLALGYNEREARAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        D  + +RLAL+ +
Sbjct: 173 TKGI----PADTDVGEGVRLALKNL 193


>gi|294054968|ref|YP_003548626.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614301|gb|ADE54456.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis
           DSM 45221]
          Length = 199

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG ++      V++DV+GV Y ++ P+ T   +  +G+ C LF+ +  R+D   L
Sbjct: 1   MIARLKGTVDESTPLLVVLDVKGVGYEVHIPVTTAEQIPAVGETCNLFIHSVYREDSATL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S  DR +F LL   V G+G ++ + +LSR++   L  +I   +  ++++ PGI  K
Sbjct: 61  YGFASREDRDFFRLLVEKVSGIGPKIGISILSRMSVNVLQAAIASSDVALLSKCPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K        Q   S  + +        S   +A+ +L  LGY    A  
Sbjct: 121 TAERLVIELKDKV-----YTQAPSSNTSSKHNANPDTSSAFQDAVGSLTTLGYKNADADK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +    ++    A    +IR AL+
Sbjct: 176 LIRKAAQRIGTDASVEDLIREALK 199


>gi|225077350|ref|ZP_03720549.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens
           NRL30031/H210]
 gi|224951342|gb|EEG32551.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens
           NRL30031/H210]
          Length = 194

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+ID+ GV Y     ++T   L  IG+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDINGVGYEADVSMQTFYNLPPIGETVHLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL ++I  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S +         V+       ++   + + I+ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVSHT---------VSDGLFAPAAVADESQDIINTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192


>gi|121601945|ref|YP_988488.1| Holliday junction DNA helicase motor protein [Bartonella
           bacilliformis KC583]
 gi|166230519|sp|A1UR85|RUVA_BARBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120614122|gb|ABM44723.1| Holliday junction DNA helicase RuvA [Bartonella bacilliformis
           KC583]
          Length = 217

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 134/214 (62%), Gaps = 7/214 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++ ++ED++++DVQGV Y+++   R LS L + G   +LF+ETH+R+D IRL
Sbjct: 1   MIGKLTGILDSVFEDHIILDVQGVGYVVFLSNRLLSSLPERGQAVSLFIETHVREDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + +++ WF LLQ+V+GVGA+VA+ +LS +   +L ++I L +  +I++ PG+   +
Sbjct: 61  FGFETKVEQDWFCLLQNVRGVGAKVALAILSTLPPPQLAQAITLSDIAMISRSPGVGKMV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM------SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           + RI+ ELK KA+  ++  Q         S  + +     +    +++A++AL  LG+ +
Sbjct: 121 SERIINELKNKALPSNAPHQSMPHFVSYSSETSSQAGTQHTGHQHSMDALAALTKLGFER 180

Query: 175 DQATTAVVSVLKK-EKNIADDSQIIRLALRAISC 207
           DQAT A+   +K  E      + +IR +L+ +S 
Sbjct: 181 DQATHALQEAIKAFEGETPSSALLIRHSLKLLSS 214


>gi|326335182|ref|ZP_08201379.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692712|gb|EGD34654.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 196

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G++      YV+ID  G+ Y +   + T S L    +   L+    +++D   L
Sbjct: 1   MITQLQGHLVEKTPTYVIIDCNGIGYWVNISLNTFSQLSDS-EQIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV GVGA  A  +LS ++  +L  +I+  + + I  + GI  K 
Sbjct: 60  FGFFEKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNNDVRTIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ K + LSS  + +++    +Q H      +   A+SAL  LGY Q  A   
Sbjct: 120 AQRIILDLREKMLKLSS--EGNIAPTVSQQQH------YKEEALSALEVLGYPQKIAENV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L          ++I+ AL+ +
Sbjct: 172 VNKILSHATGEVSVEELIKQALKQL 196


>gi|306841422|ref|ZP_07474124.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2]
 gi|306288528|gb|EFM59880.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2]
          Length = 205

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204


>gi|166031914|ref|ZP_02234743.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC
           27755]
 gi|166028367|gb|EDR47124.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC
           27755]
          Length = 203

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +   YED V++DV GV Y IY   +++S L  IG    +    ++++D ++L
Sbjct: 1   MISYIRGELAAQYEDKVIVDVGGVGYGIYMSAQSMSKLPPIGSEVKIHTYLNVKEDSMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL  V G+G +    +LS ++  +L  +++  + K I+  PGI  K 
Sbjct: 61  FGFLTVDDLNVFKLLIGVSGIGPKGGQAILSVLSPDDLRFAVMADDVKAISSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K  S+   ++  ++     +A + +       A+ ALV LGYG  +A  A
Sbjct: 121 AQKLIVELKDKL-SIEDALEHAITEDGALKAQMSTGGEIQSEAVQALVALGYGNTEALKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +        ++++ AL+ +
Sbjct: 180 VKQV--EITPDMQVEELLKRALKFM 202


>gi|303241604|ref|ZP_07328103.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus
           CD2]
 gi|302590824|gb|EFL60573.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus
           CD2]
          Length = 202

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +E  + +Y++++  GV Y IY  + T+  +  IG    ++   ++R+D + L
Sbjct: 1   MFAYIRGKLEYKHNEYIVVEANGVGYKIYTSLSTIQNVESIGSEVKIYTHLYVREDIMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL  V GVG + A+ V+S ++ ++   S+I  + K + +  GI  K+
Sbjct: 61  YGFLTQEEMGMFELLLGVSGVGPKAAISVISSMSPSKFGLSVITDDYKSLTKAQGIGNKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      V                +  S    AISALV LGY   +A+ A
Sbjct: 121 AQRIILELKDKIDKTDMVTS---FNGKDGAIPANNDNSRVSEAISALVVLGYTATEASKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V SV   +    D   II+ AL+ ++
Sbjct: 178 VASVYSDDM---DLECIIKSALKGLA 200


>gi|154246996|ref|YP_001417954.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus
           Py2]
 gi|229560140|sp|A7IJV4|RUVA_XANP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154161081|gb|ABS68297.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus
           Py2]
          Length = 205

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ L ED+V++DV GV Y+++C  RTLS L + G+   LF+ETH+R+DQIRL
Sbjct: 1   MIGKLKGVVDTLEEDHVILDVHGVGYLVHCSGRTLSALPRAGEAAALFIETHVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R WF LLQ +QG+G + A+ VLS ++A+EL ++I L +   +A+ PG+  ++
Sbjct: 61  FGFSSAAERDWFRLLQGIQGIGTKTALAVLSTLSASELTQAIALGDKTTVARAPGVGPRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+TELK K    S+   + ++          +    A +A+SALVNLGYG  QA  A
Sbjct: 121 ATRIITELKDKMPGFSA--SEPLAAQLGGGGVASAQGGAAADAVSALVNLGYGVPQANAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + L+     A    +IRL L+ ++
Sbjct: 179 IAAALRGAGEGAKTEVLIRLGLKELA 204


>gi|254429429|ref|ZP_05043136.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881]
 gi|196195598|gb|EDX90557.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881]
          Length = 200

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y +  P+     L   G   TL     +R+D   L
Sbjct: 1   MIGQLRGTLLEKRPPVLLLDVGGVGYEVEAPMTVFYDLPDAGAELTLHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  V GVG ++A+ +LS I A  L   I  Q++  + ++PGI  K 
Sbjct: 61  YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  +   +          V+  Q           +AI+AL  LGY       A
Sbjct: 121 AERLVIEMSDRLDKIDGGPVSLPGRVDTRQPD-----DARSDAIAALEALGYRNK--DAA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
                  +++     Q+IR AL++++
Sbjct: 174 AAVAKAADEDGLSSEQLIRKALKSLA 199


>gi|17986616|ref|NP_539250.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str.
           16M]
 gi|23502561|ref|NP_698688.1| Holliday junction DNA helicase RuvA [Brucella suis 1330]
 gi|62290575|ref|YP_222368.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700491|ref|YP_415065.1| Holliday junction DNA helicase RuvA [Brucella melitensis biovar
           Abortus 2308]
 gi|148560383|ref|YP_001259556.1| Holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840]
 gi|161619632|ref|YP_001593519.1| Holliday junction DNA helicase motor protein [Brucella canis ATCC
           23365]
 gi|163845283|ref|YP_001622938.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445]
 gi|189024793|ref|YP_001935561.1| Holliday junction DNA helicase RuvA [Brucella abortus S19]
 gi|225628272|ref|ZP_03786306.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo]
 gi|225853159|ref|YP_002733392.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC
           23457]
 gi|237816080|ref|ZP_04595076.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A]
 gi|254689871|ref|ZP_05153125.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 6 str.
           870]
 gi|254694364|ref|ZP_05156192.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698022|ref|ZP_05159850.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700364|ref|ZP_05162192.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 5 str. 513]
 gi|254703482|ref|ZP_05165310.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 3 str. 686]
 gi|254708429|ref|ZP_05170257.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis
           M163/99/10]
 gi|254708717|ref|ZP_05170528.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis B2/94]
 gi|254714564|ref|ZP_05176375.1| Holliday junction DNA helicase RuvA [Brucella ceti M644/93/1]
 gi|254717461|ref|ZP_05179272.1| Holliday junction DNA helicase RuvA [Brucella ceti M13/05/1]
 gi|254730906|ref|ZP_05189484.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 4 str.
           292]
 gi|256030243|ref|ZP_05443857.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis
           M292/94/1]
 gi|256045313|ref|ZP_05448207.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061740|ref|ZP_05451877.1| Holliday junction DNA helicase RuvA [Brucella neotomae 5K33]
 gi|256114271|ref|ZP_05455016.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256255624|ref|ZP_05461160.1| Holliday junction DNA helicase RuvA [Brucella ceti B1/94]
 gi|256258125|ref|ZP_05463661.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 9 str.
           C68]
 gi|256263350|ref|ZP_05465882.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260167918|ref|ZP_05754729.1| Holliday junction DNA helicase RuvA [Brucella sp. F5/99]
 gi|260547181|ref|ZP_05822919.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038]
 gi|260565796|ref|ZP_05836279.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. 16M]
 gi|260568788|ref|ZP_05839256.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40]
 gi|260755403|ref|ZP_05867751.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 6 str. 870]
 gi|260758625|ref|ZP_05870973.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 4 str. 292]
 gi|260762457|ref|ZP_05874794.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260884418|ref|ZP_05896032.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 9 str. C68]
 gi|261214674|ref|ZP_05928955.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 3 str. Tulya]
 gi|261219293|ref|ZP_05933574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M13/05/1]
 gi|261222827|ref|ZP_05937108.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           B1/94]
 gi|261315928|ref|ZP_05955125.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M163/99/10]
 gi|261316209|ref|ZP_05955406.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis B2/94]
 gi|261322354|ref|ZP_05961551.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M644/93/1]
 gi|261325744|ref|ZP_05964941.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           neotomae 5K33]
 gi|261750859|ref|ZP_05994568.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 5 str. 513]
 gi|261754112|ref|ZP_05997821.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 3 str. 686]
 gi|261757357|ref|ZP_06001066.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           F5/99]
 gi|265987271|ref|ZP_06099828.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M292/94/1]
 gi|265991738|ref|ZP_06104295.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265995575|ref|ZP_06108132.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 3 str. Ether]
 gi|294850954|ref|ZP_06791630.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026]
 gi|297248974|ref|ZP_06932682.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str.
           B3196]
 gi|54039571|sp|P66743|RUVA_BRUSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042200|sp|P66742|RUVA_BRUME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|75496341|sp|Q57BH7|RUVA_BRUAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123740945|sp|Q2YRD1|RUVA_BRUA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230523|sp|A5VS59|RUVA_BRUO2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045743|sp|A9M7K1|RUVA_BRUC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045744|sp|A9WWI0|RUVA_BRUSI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560007|sp|B2S7E0|RUVA_BRUA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766948|sp|C0REW6|RUVA_BRUMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17982229|gb|AAL51514.1| holliday junction DNA helicase ruva [Brucella melitensis bv. 1 str.
           16M]
 gi|23348562|gb|AAN30603.1| Holliday junction DNA helicase RuvA [Brucella suis 1330]
 gi|62196707|gb|AAX75007.1| RuvA, Holliday junction DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616592|emb|CAJ11671.1| Bacterial DNA recombination protein, RuvA:Helix-hairpin-helix
           DNA-binding, class 1 [Brucella melitensis biovar Abortus
           2308]
 gi|148371640|gb|ABQ61619.1| holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840]
 gi|161336443|gb|ABX62748.1| Holliday junction DNA helicase RuvA [Brucella canis ATCC 23365]
 gi|163676006|gb|ABY40116.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445]
 gi|189020365|gb|ACD73087.1| Bacterial DNA recombination protein, RuvA [Brucella abortus S19]
 gi|225616118|gb|EEH13166.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo]
 gi|225641524|gb|ACO01438.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC
           23457]
 gi|237788743|gb|EEP62955.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A]
 gi|260095546|gb|EEW79424.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038]
 gi|260151169|gb|EEW86264.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. 16M]
 gi|260154172|gb|EEW89254.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40]
 gi|260668943|gb|EEX55883.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 4 str. 292]
 gi|260672883|gb|EEX59704.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675511|gb|EEX62332.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 6 str. 870]
 gi|260873946|gb|EEX81015.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 9 str. C68]
 gi|260916281|gb|EEX83142.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 3 str. Tulya]
 gi|260921411|gb|EEX88064.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           B1/94]
 gi|260924382|gb|EEX90950.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M13/05/1]
 gi|261295044|gb|EEX98540.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M644/93/1]
 gi|261295432|gb|EEX98928.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis B2/94]
 gi|261301724|gb|EEY05221.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           neotomae 5K33]
 gi|261304954|gb|EEY08451.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M163/99/10]
 gi|261737341|gb|EEY25337.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           F5/99]
 gi|261740612|gb|EEY28538.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 5 str. 513]
 gi|261743865|gb|EEY31791.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 3 str. 686]
 gi|262766859|gb|EEZ12477.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 3 str. Ether]
 gi|263002694|gb|EEZ15097.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093349|gb|EEZ17418.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264659468|gb|EEZ29729.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M292/94/1]
 gi|294821597|gb|EFG38593.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026]
 gi|297174107|gb|EFH33464.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str.
           B3196]
 gi|326409716|gb|ADZ66781.1| Bacterial DNA recombination protein, RuvA [Brucella melitensis M28]
 gi|326539423|gb|ADZ87638.1| holliday junction DNA helicase RuvA [Brucella melitensis M5-90]
          Length = 205

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKETGEGADSAKLIRLGLKELS 204


>gi|296447311|ref|ZP_06889239.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium
           OB3b]
 gi|296255176|gb|EFH02275.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium
           OB3b]
          Length = 204

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/207 (43%), Positives = 133/207 (64%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   +D+V++DVQGV Y+++C  RTL  L + G+  +L +ET +R+D IRL
Sbjct: 1   MIGKLKGVVDSYGDDFVILDVQGVGYVVHCSTRTLQKLPRAGEAASLAIETQVREDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R WF LLQSVQGVGA+VA+ +LS +   EL  +I  Q+  ++A+  G+  K+
Sbjct: 61  FGFSADAERDWFRLLQSVQGVGAKVALAILSILGPGELASAIAGQDKAMVARASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA + +++   D +          S P  A +AISALVNLGYG+ QA  A
Sbjct: 121 AARIVAELKDKAPAFAAL---DPALARLSGETEASAPQAAQDAISALVNLGYGRPQAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V + LK     AD   +IR  L+ ++ 
Sbjct: 178 VAASLKALGESADTGALIRRGLKELAS 204


>gi|254719706|ref|ZP_05181517.1| Holliday junction DNA helicase RuvA [Brucella sp. 83/13]
 gi|265984721|ref|ZP_06097456.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           83/13]
 gi|306837835|ref|ZP_07470697.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653]
 gi|264663313|gb|EEZ33574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           83/13]
 gi|306407074|gb|EFM63291.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653]
          Length = 205

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204


>gi|238792583|ref|ZP_04636216.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           intermedia ATCC 29909]
 gi|238728218|gb|EEQ19739.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           intermedia ATCC 29909]
          Length = 188

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           L++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R  F  L  
Sbjct: 2   LLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K +   L+ 
Sbjct: 62  VNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLNG 121

Query: 138 VVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
            +  +   +     +   S       A SALV LGY   +A+  V  + K     AD   
Sbjct: 122 DLFNNTGDIQLPASSSQTSDADIEAEAASALVALGYKPQEASRLVSKIAK---PGADCET 178

Query: 197 IIRLALRA 204
           +IR ALR+
Sbjct: 179 LIRDALRS 186


>gi|256370112|ref|YP_003107623.1| Holliday junction DNA helicase motor protein [Brucella microti CCM
           4915]
 gi|306844695|ref|ZP_07477280.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1]
 gi|256000275|gb|ACU48674.1| Holliday junction DNA helicase motor protein [Brucella microti CCM
           4915]
 gi|306274867|gb|EFM56637.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1]
          Length = 205

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204


>gi|95931133|ref|ZP_01313858.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM
           684]
 gi|95132823|gb|EAT14497.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM
           684]
          Length = 199

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I     D V++DV GV Y +  P+ +   L +     TL + TH+R+D ++L
Sbjct: 1   MIARLCGTIVSKTIDQVIVDVNGVGYQVSVPLSSFYQL-EENQTATLQIYTHVREDALQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  ++Q F+LL S+ G+G +VA+ +LS +    L + ++ +++K +A +PGI  K 
Sbjct: 60  FGFQSLDEKQMFILLLSISGIGPKVALNILSHMDCHALRDCLLQEDAKRLATLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L     Q      +   H     +   +A+SAL+NLGY + QA+ A
Sbjct: 120 ADRLILELREKVRKLYPEQPQTTQAAPEGVLH----NNHHDDALSALINLGYKEKQASAA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + ++    +   ++++ AL+ +S
Sbjct: 176 LSRLTRE---FSSMEEMLKAALQQLS 198


>gi|15891225|ref|NP_356897.1| Holliday junction DNA helicase motor protein [Agrobacterium
           tumefaciens str. C58]
 gi|22001979|sp|Q8U9K5|RUVA_AGRT5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15159588|gb|AAK89682.1| Holliday junction DNA helicase RuvA [Agrobacterium tumefaciens str.
           C58]
          Length = 205

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG+IE +  DYVL+DV GVCY+ YC  RTLS +G +G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGSIEEIGADYVLVDVHGVCYVAYCSARTLSKIGSVGEAVVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S L+R+WF LLQSVQGVG++VA+ VLS ++ +EL  +I LQ+  +I++ PGI  K+
Sbjct: 61  FGFVSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKTMISRAPGIGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TEL+ KA + +      +    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRLVTELRNKAPAFAGDASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL L+ +S
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204


>gi|291538854|emb|CBL11965.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis
           XB6B4]
          Length = 203

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 108/206 (52%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  + E+ ++++  G+ Y IY   +T   L  +G+   ++   H+R+D + L
Sbjct: 1   MYSYIKGILTDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  + + + LL  V G+G + A+ +LS +T  +L  +++  ++K IA+ PG+  K 
Sbjct: 61  FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     +  Q+        + H          A+ ALV LGY   +A  A
Sbjct: 121 AQRLILELKDKLSLEDAFEQKFEKTGESTENHASGT---KNEAVQALVALGYSSSEALRA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   E+   D  +I+++AL+ ++
Sbjct: 178 LNGIEITEE--TDVEEILKMALKKMA 201


>gi|49474677|ref|YP_032719.1| Holliday junction DNA helicase motor protein [Bartonella quintana
           str. Toulouse]
 gi|81646802|sp|Q6FYP5|RUVA_BARQU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49240181|emb|CAF26647.1| Holliday junction DNA helicase ruvA [Bartonella quintana str.
           Toulouse]
          Length = 205

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 131/207 (63%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++++DVQGV Y+++   R    L  +G+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHVFDDHIIVDVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFVAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK KA+        D +     Q H+        +A+SALV LG+ +DQA  A
Sbjct: 121 SERIVSELKSKALPF-----NDNALHFTPQPHLEVTHQPTNDALSALVKLGFERDQAARA 175

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +   +   E      + +IR +L+ +S
Sbjct: 176 LALAMNALEGETVSSALLIRHSLKLLS 202


>gi|239832790|ref|ZP_04681119.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG
           3301]
 gi|239825057|gb|EEQ96625.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG
           3301]
          Length = 205

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y  +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYAAFCSARTLGNLGGAGEAAVLFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204


>gi|325981222|ref|YP_004293624.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp.
           AL212]
 gi|325530741|gb|ADZ25462.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp.
           AL212]
          Length = 193

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   VL++VQGV Y I  P+ T   L  IG   TL+    +R+D   L
Sbjct: 1   MIGRLTGKLLEKHPPQVLLEVQGVGYEIDVPMSTFYDLPTIGVEITLYTHLVIREDMHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L  + G+GAR A+ +LS ++  +L  ++ +Q+S  + ++PGI  K 
Sbjct: 61  FGFATEPERQTFRQLIKISGIGARTALALLSGLSVADLHHAVSIQDSARLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K          D++ ++ ++    +  S   + ++AL++LGY   +A+ A
Sbjct: 121 AERLLLELRDKL---------DLALLSSDRVLSSTSES---DILNALLSLGYSDREASWA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +     + A  S  IR AL+ +S
Sbjct: 169 IKQI----SSNAMVSDGIRQALQLLS 190


>gi|237654483|ref|YP_002890797.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T]
 gi|237625730|gb|ACR02420.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T]
          Length = 200

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y I  P+ T   L   G   +L     +R+D   L
Sbjct: 1   MIGRITGTLLEKNPPQILVDAHGVGYEIDVPMSTFYNLPATGGTVSLHTHFVVREDGHFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  V GVGAR+A+ VLS ++  +L +++ LQ +  + +IPGI  K 
Sbjct: 61  FGFATEEERATFRQLLKVSGVGARMALAVLSGLSVNDLAQAVALQEAGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K           M+      A   + P    + ++AL+ LGY + +A +A
Sbjct: 121 AERLLLELRDKLGK----ALPSMTGARLAAAAPGAAPDAKSDILNALLALGYNEREALSA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               +K        S  IR AL+A+S
Sbjct: 177 ----MKGLAEDVGVSDGIRQALKALS 198


>gi|115526757|ref|YP_783668.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           BisA53]
 gi|122294484|sp|Q07H96|RUVA_RHOP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115520704|gb|ABJ08688.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris BisA53]
          Length = 205

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 136/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L + G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDYVILDVQGVGYQVHCASRTLQALPQAGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS +  ++L ++I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDLEREWFRLLQTVQGVGAKVALSVLSTLPPSDLADAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA   +SV                S P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPGFASVDPAVAHLSG--AIEERSAPRPVADAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A  +Q+I+L L+ +S
Sbjct: 179 IAAAARSAGDAAQTAQLIKLGLKELS 204


>gi|299533018|ref|ZP_07046405.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44]
 gi|298719242|gb|EFI60212.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44]
          Length = 191

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G    L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +     + +  +   + + AL+ LGY   +A+ A
Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNNDQNDILQALMALGYSDKEASAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LKK       S+ I+LAL+A+
Sbjct: 169 ----LKKLPPDVGVSEGIKLALKAL 189


>gi|83312317|ref|YP_422581.1| Holliday junction DNA helicase RuvA [Magnetospirillum magneticum
           AMB-1]
 gi|123726899|sp|Q2W2A3|RUVA_MAGMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|82947158|dbj|BAE52022.1| Holliday junction resolvasome, DNA-binding subunit
           [Magnetospirillum magneticum AMB-1]
          Length = 212

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG I+ L +D+ ++D  GV Y++ C  +TL+ L + G    LFVET +R+D I L
Sbjct: 1   MIAKLKGLIDSLGDDWAVVDCNGVGYLVACSSKTLARL-ETGTAAALFVETQVREDAISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +R WF LL +VQGVGA+VA+ +LS  +  +L++ I  Q+   + +  G+  K+
Sbjct: 60  FGFLETGERDWFRLLTTVQGVGAKVALAILSVASPDQLLQIIAAQDKAGLTRANGVGPKL 119

Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+TELK KA    L       +       A + +      +A+SALVNLGY + +A 
Sbjct: 120 AVRILTELKDKAGKIALGGFSPGGIKDALSASAPLPAASGRMEDAVSALVNLGYKRLEAF 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV    ++  + AD S +IR AL+ +
Sbjct: 180 QAVGETARELGDEADSSALIRAALKHL 206


>gi|46445654|ref|YP_007019.1| Holliday junction DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81627839|sp|Q6MFA5|RUVA_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46399295|emb|CAF22744.1| probable Holliday junction DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 201

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 106/203 (52%), Gaps = 4/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +        ++DV GV Y+++ P R L  L +IG+    +    +R+    L
Sbjct: 1   MFAYIKGVLAFFNPSQAIVDVHGVGYLLFIPCRLLGQLPQIGEPVQFYTTYVVREFSHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R  F +L +V G+G ++A+ ++  ++ +EL  +++ Q+   + ++PG+  K 
Sbjct: 61  YGFLSYQERDIFEILMNVTGIGPKMALSLIGHLSMSELQIAVMRQDLSTLCRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  ++  +   D    + E            +A+ AL+NLGY Q  A  A
Sbjct: 121 AERLIVELKDKLAAIGHLDTSD----HIEPLTQDPKSKSVQDAMLALINLGYNQTTAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +   +K+     D +Q+I +AL+
Sbjct: 177 IKQGMKELPEEIDLAQLITVALK 199


>gi|189424313|ref|YP_001951490.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ]
 gi|229560034|sp|B3E790|RUVA_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189420572|gb|ACD94970.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ]
          Length = 200

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D+V++DV GV Y +  P  T   L + G   TL + T +R+D I L
Sbjct: 1   MIALLTGQIAHKSPDHVILDVHGVGYRVMIPFSTYYELPEEGQ-ATLHIHTSVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++ +F LL SV G+G ++A  +LS I   +L  ++   +   ++ IPGI  K 
Sbjct: 60  YGFRTRTEKSFFQLLISVSGIGPKLARDILSNIQPPQLAAALQQGDLHKLSAIPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK KA  L S        V +         S   +  SALVNLGY   Q    
Sbjct: 120 AERLVLELKDKAGKLDSGSIPAGDAVGRS----LPAGSVLDDVSSALVNLGYKDPQVRKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       A   ++++ AL+ +
Sbjct: 176 LAEL--DCAGSASVEEVLKQALKIL 198


>gi|331000258|ref|ZP_08323942.1| Holliday junction DNA helicase RuvA [Parasutterella
           excrementihominis YIT 11859]
 gi|329572424|gb|EGG54077.1| Holliday junction DNA helicase RuvA [Parasutterella
           excrementihominis YIT 11859]
          Length = 189

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I       V+I+  G+ Y I  P+ T   L  IG+   L     +R+D   L
Sbjct: 1   MIATIRGKILQKNPPQVVIECGGLGYEIDVPMSTFYNLPNIGEEVFLETVMIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L  V G+G R+++ +LS ++A ++  +I      ++  +PGI  K 
Sbjct: 61  YGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K +  S                  ++ S     I ALV LG+ + +A  A
Sbjct: 121 AERLVLELKDKMVVTS----------------APTVSSVQTEVIQALVALGFSEREARGA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V       AD S+ IRL LR ++
Sbjct: 165 AKNV----PADADASEGIRLCLRQLA 186


>gi|91776705|ref|YP_546461.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus
           KT]
 gi|123253965|sp|Q1GYR7|RUVA_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91710692|gb|ABE50620.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus
           KT]
          Length = 194

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+ID  GV Y    P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIARLSGILVEKTPPQVVIDCHGVGYECEVPMSTFYNLPATGEKVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R  F  L  V GVGA+ A+ +LS ++  +L +++ LQ + ++ ++PGI  K 
Sbjct: 61  YGFGSDQERATFRQLLKVNGVGAKSALAILSGLSVDDLAQAVALQETGLLIKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K                   A      S + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKDKFAIDGGTA----------LAGSNPAKSASSDVLNALLALGYNEREALAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    K+       ++ I+L+L+++S
Sbjct: 171 V----KQLPADIAVAEGIKLSLKSLS 192


>gi|329296286|ref|ZP_08253622.1| Holliday junction DNA helicase RuvA [Plautia stali symbiont]
          Length = 204

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+   V Y ++ P+     L  I     +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLIEAHCVGYEVHLPMTCFYELPDINQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D +      +           A++ALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAQQDNNDAEAEAVAALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K +   AD   +IR ALRA
Sbjct: 181 MVSKVGKPD---ADCETLIREALRA 202


>gi|332292213|ref|YP_004430822.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170299|gb|AEE19554.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 193

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V++D  GV Y I   + T   LG   +   L     +++D   L
Sbjct: 1   MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGRLGDS-EALKLHTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+  ++R+ F LL SV G+GA  A  +LS +   ++ ++I   +   I  I GI  K 
Sbjct: 60  FGFVEVMEREIFRLLLSVSGIGASTARTMLSSLDPHQIKQAIASNDVATIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  +  +     N  +            A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLKDKILKVYDMSSESAVQSNTSK----------EEALSALETLGFARKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +++K++ + A    II+ AL+ +
Sbjct: 170 CTAIVKEKPD-ASVETIIKEALKKL 193


>gi|253574942|ref|ZP_04852282.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845988|gb|EES73996.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 206

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  L  +YV++DVQGV Y ++CP    +   K  +  T++   H+R+D I L
Sbjct: 1   MIDFLRGQIAHLETEYVVLDVQGVGYRVFCP-NPYAFAAKGQETVTIYTHHHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G RVA+G+LS  +   +V +I  +N   + ++PGI  K 
Sbjct: 60  FGFPTREEQKLFRKLIEVSGIGPRVALGILSGGSPDHVVAAIHQENVSFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   +   +   +     E       P +   A   L  LGY + +    
Sbjct: 120 AQRMILDLKDKLEGVGGTLFDPVPADVGETLGDDGNPGW-PEAREGLKALGYTEAELDKV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +            +++ AL+ +
Sbjct: 179 WHRLKDDVGPDEAVDSVMKKALKLL 203


>gi|303258188|ref|ZP_07344195.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium
           1_1_47]
 gi|302858941|gb|EFL82025.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium
           1_1_47]
          Length = 189

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I       V+++  G+ Y I  P+ T   L  IG+   L     +R+D   L
Sbjct: 1   MIATIRGKILQKNPPQVVVECGGLGYEIDVPMSTFYNLPNIGEEVFLETVMIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L  V G+G R+++ +LS ++A ++  +I      ++  +PGI  K 
Sbjct: 61  YGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K +  S                  ++ S     I ALV LG+ + +A  A
Sbjct: 121 AERLVLELKDKMVVTS----------------APTVSSVQTEVIQALVALGFSEREARGA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V       AD S+ IRL LR ++
Sbjct: 165 AKNV----PADADASEGIRLCLRQLA 186


>gi|222055417|ref|YP_002537779.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32]
 gi|254766963|sp|B9LZC5|RUVA_GEOSF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221564706|gb|ACM20678.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32]
          Length = 199

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D++++DV GV Y +  P  T   L + G   +L + TH+++D I L
Sbjct: 1   MIALLTGKLAHKSPDFIILDVNGVGYRVQIPFSTYYALPEGGSSVSLNIFTHVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL SV G+G ++  G+LS I A  L +++I  +   +A IPGI  K 
Sbjct: 61  YGFRTMEEKEMFQLLISVSGIGPKLGNGILSNIEAQNLSDALIRGDLARLATIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L          + ++ A   +      + +SALVNLGY +      
Sbjct: 121 AERLVLELREKVKKLGH------GPLQQDVAPADAHNDMRDDVVSALVNLGYKEAVVQKT 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +       A    +++ AL+ +
Sbjct: 175 VDEI--GVAADATVESLLKQALKKL 197


>gi|313239182|emb|CBY14141.1| unnamed protein product [Oikopleura dioica]
          Length = 202

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V+++V GV Y +  P+ +   L  IG    L     +R+D   L
Sbjct: 1   MITFLHGRLVDALPTQVVVEVHGVGYEVLIPLSSFDRLPGIGQEIHLLTHLTVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF++  +R+ F LL  +V G+G R+A+ VLS +  T    ++   + + ++QI G+  K
Sbjct: 61  YGFVTGAERELFRLLVHTVTGIGPRIALNVLSGMPPTAFRSAVATGDIRALSQISGVGRK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K  S +++                       +A+ ALV LG+ Q +A  
Sbjct: 121 TAERIIVELKDKVGSAAALETTGPGRTAGPTEK------AVHDAVLALVALGFKQPEAFE 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V +        A   Q++R  L+ 
Sbjct: 175 TVRAAQAALGPQATVEQLVRAGLKK 199


>gi|291524757|emb|CBK90344.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale
           DSM 17629]
 gi|291528922|emb|CBK94508.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale
           M104/1]
          Length = 205

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +     D ++++  GV Y+IY P +    L   G+   ++    +R+D + L
Sbjct: 4   MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G +  + +LS + A +L  +I+  +SK I++ PGI  K 
Sbjct: 64  YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K     +  ++  +  +   A +    +   +A+ AL  LGY   ++  A
Sbjct: 124 AQRVILDLKDKLSLEDAFEKKLENQTSG--AAVSMNSTVKNDAVMALNALGYSSTESLKA 181

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V   E    D   +++LAL+ +
Sbjct: 182 VSKVDITED--MDVEDVLKLALKNM 204


>gi|298293003|ref|YP_003694942.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506]
 gi|296929514|gb|ADH90323.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506]
          Length = 205

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L   G+  TLF+ET +R+D IRL
Sbjct: 1   MIGKLKGIVDSYVEDHVILDVHGVGYLVHCSARTLQQLPSPGEAATLFIETFVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++ WF LLQ+VQGVGA+VA+ VLS ++ +EL  ++ L +  ++A+  G+  K+
Sbjct: 61  YGFASPAEKAWFTLLQNVQGVGAKVALSVLSVLSPSELANAVALGDRAMVARANGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA   + +           Q      P+   +A+SALVNLGY Q QA+ A
Sbjct: 121 AARIVAELKDKAPGFADIDPAVAGLAA--QIEERHAPAPVADAVSALVNLGYAQIQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +++    AD +++IRL L+ ++
Sbjct: 179 VAAAMREAGEGADAARLIRLGLKELA 204


>gi|53804471|ref|YP_113686.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str.
           Bath]
 gi|81682299|sp|Q609L1|RUVA_METCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|53758232|gb|AAU92523.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str.
           Bath]
          Length = 201

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +       +LIDVQG+ Y +  P+ T   L +IG    L+    +R+D   L
Sbjct: 1   MIGFIRGLLVAKRAPSLLIDVQGLGYELDAPMSTFYNLPEIGAEVRLYTHLQIREDAHSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  V G+GA++A+ +LS I+  +    +  Q+S  + ++PGI  K 
Sbjct: 61  FGFGTEAERGLFRSLIRVSGIGAKLALAILSGISVDDFRACVERQDSARLVRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   L   V           A        A  A+SAL+ LG+   +A T 
Sbjct: 121 AERLIIELRDR---LDIGVPSLAPASFAGGAAPLPAADPADEAVSALIALGFKPQEANTL 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V    ++         +IR AL++
Sbjct: 178 VA---RQAAEGRSAEDLIRAALQS 198


>gi|188580172|ref|YP_001923617.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001]
 gi|229560102|sp|B1Z924|RUVA_METPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|179343670|gb|ACB79082.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001]
          Length = 208

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/209 (42%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + V    ++     +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPVDPALVALTGAVEDRTA--PQPVADAISALVNLGYPQVQASAA 178

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           + + LK   + A+  +   +IRL LR ++
Sbjct: 179 IAAALKGLGDGAETVEAKTLIRLGLRELA 207


>gi|238762969|ref|ZP_04623936.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           kristensenii ATCC 33638]
 gi|238698727|gb|EEP91477.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           kristensenii ATCC 33638]
          Length = 189

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 5/189 (2%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           L++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R  F  L  
Sbjct: 2   LLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K +   L+ 
Sbjct: 62  VNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLNG 121

Query: 138 VVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
            +  +   +    +     S       A SALV LGY   +A+  V  + K     AD  
Sbjct: 122 DLFNNTGDIQLPASSSSQISDADIEAEAASALVALGYKPQEASRLVSKIAK---PGADCE 178

Query: 196 QIIRLALRA 204
            +IR ALRA
Sbjct: 179 TLIRDALRA 187


>gi|240144037|ref|ZP_04742638.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82]
 gi|257203963|gb|EEV02248.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82]
 gi|291536276|emb|CBL09388.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis
           M50/1]
          Length = 203

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 108/206 (52%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  + E+ ++++  G+ Y IY   +T   L  +G+   ++   H+R+D + L
Sbjct: 1   MYSYIKGILRDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  + + + LL  V G+G + A+ +LS +T  +L  +++  ++K IA+ PG+  K 
Sbjct: 61  FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     +  Q+        + H          A+ ALV LGY   +A  A
Sbjct: 121 AQRLILELKDKMSLEDAFEQKFEKTGEPAENHAQGT---KNEAVQALVALGYSSSEALRA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   E+   D  +I+++AL+ ++
Sbjct: 178 LNGIEITEE--TDVEEILKMALKNMA 201


>gi|86131995|ref|ZP_01050591.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia
           donghaensis MED134]
 gi|85817329|gb|EAQ38509.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia
           donghaensis MED134]
          Length = 193

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V++D  GV Y I   + T   LG  G+   L+    +++D   L
Sbjct: 1   MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGQLGD-GEALKLYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+  ++R+ F LL SV G+GA  A  +LS +   ++ ++I   +   I  I GI  K 
Sbjct: 60  YGFMEVMEREIFRLLLSVSGIGASTARTMLSSLEPNQIKQAIASNDVATIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + R++ +LK K + +  +  +     N  +            A+SAL  LG+ + QA   
Sbjct: 120 SQRVILDLKDKILKVYDISTESAVQSNTNK----------EEALSALETLGFARKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +++ K++ + A    II+ AL+ +
Sbjct: 170 CLAITKEKPD-ASVETIIKEALKKL 193


>gi|238924017|ref|YP_002937533.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium
           rectale ATCC 33656]
 gi|238875692|gb|ACR75399.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium
           rectale ATCC 33656]
          Length = 205

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +     D ++++  GV Y+IY P +    L   G+   ++    +R+D + L
Sbjct: 4   MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G +  + +LS + A +L  +I+  +SK I++ PGI  K 
Sbjct: 64  YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K     +  ++  +  +   A +    +   +A+ AL  LGY   ++  A
Sbjct: 124 AQRVILDLKDKLSLEDAFEKKLENQASG--AAVSMNSTVKNDAVMALNALGYSSTESLKA 181

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V   E    D   +++LAL+ +
Sbjct: 182 VSKVDITED--MDVEDVLKLALKNM 204


>gi|90022179|ref|YP_528006.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus
           degradans 2-40]
 gi|122996073|sp|Q21HN5|RUVA_SACD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89951779|gb|ABD81794.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus
           degradans 2-40]
          Length = 207

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +      ++LID+ GV Y +  P+ T   L  +G+   L     + +   +L
Sbjct: 1   MIGRLTGILAEKKAPHLLIDIGGVGYDVIAPMTTFYRLPALGEKAVLHTHFSVSETSQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  DR+ F +L  V GVG ++A+G++S + +++  + ++  N   + ++PG+  K 
Sbjct: 61  FGFSSQQDRELFRMLIKVNGVGPKLAVGIMS-MESSDFAKCVLDGNLTALVKLPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----AHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ +++ +  +L +   +               + +      +A SAL+ LGY   +
Sbjct: 120 AERLLVDMRDRVKALDTTPSEHSPTGEGAGIVRVDPVINTNVIIADAESALIGLGYKPTE 179

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  AV +       I     +IR AL+ +
Sbjct: 180 AAKAVSAAY--NDTITTSEDLIRAALKGM 206


>gi|153814820|ref|ZP_01967488.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756]
 gi|331089652|ref|ZP_08338551.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847851|gb|EDK24769.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756]
 gi|330405020|gb|EGG84558.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 204

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  + E   +IDV G+ Y ++ P + L+ L  +G+   L+   ++R+D ++L
Sbjct: 1   MISYVKGELAAIEEQKAIIDVGGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS ++  EL  +I+  ++K+I+  PGI  K 
Sbjct: 61  FGFLTKDDLEIFRLVIGVSGIGPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178
           A +++ EL+ K   +  ++          Q  +   S       A+ ALV LGYG  ++ 
Sbjct: 121 AEKLIVELRDKV-DIEKMLDHAAHPEETIQTDMAKTSANEMQSEAVQALVALGYGSAESL 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV    K          I++ AL+ +
Sbjct: 180 RAVK---KTSVQCQTVEDILKEALQYL 203


>gi|319778457|ref|YP_004129370.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9]
 gi|317108481|gb|ADU91227.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9]
          Length = 191

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 110/205 (53%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG +   +   V ID+ G+ Y +   + +   L ++G   TLF    +R+D   L
Sbjct: 1   MISRLKGKLIYKFPPTVCIDIGGIAYDVDVSLTSFYELPEVGQEVTLFTHLAVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ +R  F  L  V G+G + A+G+LS ++   L  +I  Q+S  + ++PGI  K 
Sbjct: 61  YGFISEDERATFRTLIKVNGIGFKSALGILSGMSPDALYNAIEEQDSSQLERVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELKGK   +S++     +  N              + + AL+NLGY + QA  A
Sbjct: 121 AARIILELKGKLPEISTLNNTTSNLKNHN------------DVLIALLNLGYSEKQAKLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K      D S+ +R+ALR++
Sbjct: 169 ISTLPKD----IDASEGVRIALRSM 189


>gi|292490335|ref|YP_003525774.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4]
 gi|291578930|gb|ADE13387.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4]
          Length = 199

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L++VQGV Y +  P+ T   L   G    L+    +R D   L
Sbjct: 1   MIGRLRGVLLEKRAPFLLLEVQGVGYELEAPMSTFYVLPDRGAEVILYTHLVVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F S+ +R+ F  L  V GVGA++ + +LS I        +   ++  + ++PG+  K 
Sbjct: 61  YAFASEKERELFRNLIRVNGVGAKLGLAILSGIEVESFTRCVQEGDTASLTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +              +      + S      +A+SALV LGY    A+  
Sbjct: 121 AERLIVEMRDRLFD------GPREEMAGVLPRVGSGQVPTSDAVSALVALGYKSQDASRM 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +           +IIR AL+ +
Sbjct: 175 VRQL---NTEGLATEEIIRQALQRM 196


>gi|269103018|ref|ZP_06155715.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162916|gb|EEZ41412.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 187

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 7/188 (3%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            G+ Y +  P+     L ++G    +F    +R+D   L+GF    +R+ F  +    GV
Sbjct: 2   GGIGYEVQMPMSCFYELPEVGQEAIIFTHFVVREDAQLLYGFNKKSERELFREVIKANGV 61

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS---- 137
           G ++ + +LS +TA++ V S+  ++   + +IPG+  K A R++ E+K +          
Sbjct: 62  GPKLGLAILSAMTASQFVLSVEQEDITTLVKIPGVGKKTAERLLVEMKDRLKGWGEGDLF 121

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
              QD +  N    +  S       A+SALV LGY   QA+  V  V + E +      I
Sbjct: 122 TPAQDTAASNAPIQNPSSQARAEDEAVSALVALGYKPQQASKVVSQVAQPEMS---SETI 178

Query: 198 IRLALRAI 205
           IR ALR++
Sbjct: 179 IREALRSM 186


>gi|295399354|ref|ZP_06809336.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110086|ref|YP_003988402.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1]
 gi|294978820|gb|EFG54416.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215187|gb|ADP73791.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1]
          Length = 199

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    S         T++   ++R+D + L
Sbjct: 1   MIEFIRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDMLAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     +LVE+I  +N   + + PG+  K 
Sbjct: 60  YGFRTREERALFAKLLQVSGIGPKGGLAILAAGRPEQLVEAIEQENETFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  ++++    D+    +E +H+    S    AI AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTAVAARTYPDLFHPEEEPSHL----SALEEAIEALKALGYAEREIQKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S++K+        Q ++ AL+ +
Sbjct: 176 VPSLMKEN---LSTDQYVKRALQQL 197


>gi|300770096|ref|ZP_07079975.1| crossover junction ATP-dependent DNA helicase RuvA
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762572|gb|EFK59389.1| crossover junction ATP-dependent DNA helicase RuvA
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 194

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M     G +      +V++DV G+ Y I+  + T S L K  + C LF+   +R+D   L
Sbjct: 1   MYEYFNGKLVFKAPTHVVLDVNGIGYYIHISLNTFS-LIKDQENCKLFISFQVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L SV G+G      +LS IT  E+  +II     VI +I GI  K 
Sbjct: 60  FGFANEGERQLFEHLISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +   + + S  S    A+SAL+ LG+ ++QA   
Sbjct: 120 AQRLILELQDKLKKQGP---------DALISPVASKQSVPEEALSALIMLGFVKNQAEKV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +++  E ++    Q+I+LAL+ +
Sbjct: 171 LNTIINTEPDL-SVEQLIKLALKRL 194


>gi|220921373|ref|YP_002496674.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS
           2060]
 gi|254767374|sp|B8IM27|RUVA_METNO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219945979|gb|ACL56371.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS
           2060]
          Length = 205

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L  +G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGVVDSYGEDFVILDVHGVGYVVHCSARTLQRLPPVGEAADLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   IA+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPADLATAIATGDKGAIARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + V    +      +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPVDPALIRLAGAVEERTA--PQPVADAISALVNLGYPQIQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + L+     A+   +IRL LR ++
Sbjct: 179 VAAALQGAGEGAEAKTLIRLGLRELA 204


>gi|319943009|ref|ZP_08017292.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia
           mirabilis ATCC 51599]
 gi|319743551|gb|EFV95955.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia
           mirabilis ATCC 51599]
          Length = 195

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y I  P+ TL  L   G   TL+    +R+D   L
Sbjct: 1   MIGRIHGTLVLANPPEILVDAHGVGYEISVPMSTLYELPPPGQTVTLWTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F  +  V G+G R+A+ VLS ++  +L  ++  Q +  + ++PG+  K 
Sbjct: 61  YGFLTESERTAFRAMIRVSGIGPRMALAVLSGLSVDDLSRAVAEQETGRLTRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK    SS +          Q +  ++ S   + + AL+ LGY + ++  A
Sbjct: 121 AERLLLELKGKLALASSGI----------QINDQALFSSGDDILRALLALGYSEKESNAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +        + +  IR AL+ +
Sbjct: 171 IAKL----PEGVNVNDGIRQALKLL 191


>gi|258514397|ref|YP_003190619.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778102|gb|ACV61996.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 203

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  +  + V++DV GV Y I+ P    S L   G+   L     +++D ++L
Sbjct: 1   MIAFLRGKIVFIEANSVVLDVSGVGYRIFVPASCQSKLPAAGEEMLLLTYLSVKEDSLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F++L +V G+G + A+ VLS ++  +L  ++  ++ K + ++PGI  K 
Sbjct: 61  YGFIEQQERELFVMLLNVGGIGPKGALSVLSCLSPAQLYLAVAREDIKAVMKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K        ++           +    + A +A+ AL  LGY   +A   
Sbjct: 121 AQRLILELKDKLKGRVQPGEETTPET------VSGSQNEAEDALFALEALGYSVSEAIVV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V  VL+        S++++ AL+ +  
Sbjct: 175 VQEVLRSSSKNISASELLKNALQKLDA 201


>gi|170746561|ref|YP_001752821.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans
           JCM 2831]
 gi|229560103|sp|B1M6A3|RUVA_METRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170653083|gb|ACB22138.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans
           JCM 2831]
          Length = 205

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV YI++C  RTL  + K+G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGVVDSFGEDFVILDVSGVGYIVHCSARTLQRMPKVGEPAELSIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVGARVA+GVLS +    L  +I   +   I++ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGARVALGVLSVLEPEALASAIATGDKGSISRAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R+  ELK KA + + V    ++          + P    +A+SALVNLGY Q QA  A
Sbjct: 121 AARLAAELKDKAPAFAPVDPALVALAG--AVEEGAAPQPVADAVSALVNLGYPQVQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + LK     A+   +IRL LR ++
Sbjct: 179 IAAALKGAGEGAEAKVLIRLGLRELA 204


>gi|86140746|ref|ZP_01059305.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832688|gb|EAQ51137.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 193

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       V+I+  GV Y +   + T S L + G+   L+   H+++D   L
Sbjct: 1   MITFLRGKLIEKNHTDVVIECHGVGYFVNISLHTFSLLPE-GESIMLYTYLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F LL SV GVG  +A  +LS +  +++ ++I   + K I  + GI  K 
Sbjct: 60  YGFAHKSEREIFKLLISVSGVGTSIARTMLSSLEPSQVKQAIATGDVKTIQGVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  +           +    +  +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLKDKILKVYDI----------NEVSPIADNTNKEEALSALETLGFARKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++++ E   A    II+LAL+ +
Sbjct: 170 CTTIVRDEPQ-ASVETIIKLALKKL 193


>gi|50085685|ref|YP_047195.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. ADP1]
 gi|49531661|emb|CAG69373.1| holliday junction helicase subunit A [Acinetobacter sp. ADP1]
          Length = 204

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 4   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++  F  L  V GVG ++A+G+LS ++    + +I   +   + ++PG+  K 
Sbjct: 63  YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +LS  VQ              S  S    A +AL +LGY   +A  A
Sbjct: 123 AERLMIELRDRFKALS--VQATTGSTVTSAQIQFSSNSPIAEAEAALQSLGYKPIEAQKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V       AD   +IR AL+++
Sbjct: 181 IAAVKADYTEAAD---LIRAALKSM 202


>gi|254787341|ref|YP_003074770.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901]
 gi|259495657|sp|C5BQT5|RUVA_TERTT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|237687527|gb|ACR14791.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901]
          Length = 206

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ GN+       +++D+ GV Y +  P+ T   L ++     L     + +   +L
Sbjct: 1   MIGRLTGNLVVKQAPNLMVDINGVGYDLLAPMSTFYQLPELDAKVVLHTHFAVSETSQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   DR++F +L  V GVG ++A+G++S +   ++V  I+  N   + ++PG+  K 
Sbjct: 61  FGFIDQQDREFFRMLIKVNGVGPKMAVGIMS-METNDIVRCILEDNLNALVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E++ K  S       D    +    +   S  +    A SALV LGY   +A+ 
Sbjct: 120 AERLIIEMRDKLKSWQVTPSVDATGSLVALDSAAPSQNAIVAEAESALVALGYKPVEASK 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V   E  I     +IRLALR +
Sbjct: 180 AVARVTSDE--ITRSEDLIRLALRNM 203


>gi|255526659|ref|ZP_05393564.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|296187164|ref|ZP_06855561.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|255509639|gb|EET85974.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|296048199|gb|EFG87636.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
          Length = 197

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 110/205 (53%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G   G+ +DY++++  G+ Y IY    TL+ + KI +   L+++  +R+D I L
Sbjct: 1   MYEYIRGTYAGMNKDYIVVENNGIGYKIYTSGSTLAKIPKINEEIMLYLQQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL S+ GVGA+ A+ +LS  +   L  +I+  + K+I + PGI  K+
Sbjct: 61  YGFLTKEELSMFNLLLSINGVGAKAALSLLSISSVNNLKYAILSGDEKLITRAPGIGKKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI+ ELK K         +D+     +   I      +  A+ ALV LGY + +A  A
Sbjct: 121 SQRIILELKDKVK------PEDVDISQGDTIEIDETAGNSSEALEALVALGYSEKEANKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ KK+        IIR AL+ +
Sbjct: 175 INTIDKKD----SVENIIRNALKFL 195


>gi|264680422|ref|YP_003280332.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2]
 gi|262210938|gb|ACY35036.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2]
          Length = 191

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G    L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  FGFGTARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +     + +  +   +   AL+ LGY   +A+ A
Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNNDQNDIQQALMALGYSDKEASAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LKK       S+ I+LAL+A+
Sbjct: 169 ----LKKLPPDVGVSEGIKLALKAL 189


>gi|254449000|ref|ZP_05062454.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           HTCC5015]
 gi|198261394|gb|EDY85685.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           HTCC5015]
          Length = 205

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 105/204 (51%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +      ++L+DV GV Y +  P+ T+  L   G    + + TH+R+D I+L
Sbjct: 1   MIGRLSGTLISKQAPHLLVDVNGVGYEVEAPLSTVFELPAEGQAVVVLIHTHVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F +D++R++F  L  + GVGA++A+ ++S  +A    + +  +++  + ++PG+  K 
Sbjct: 61  FAFGTDIERRFFRSLIKINGVGAKMALAIMSGASAETFAQWVDQEDTAALTKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +      +            A   +  S    A++AL  LGY   +A   
Sbjct: 121 AERLVIEMRDRLDKEVFMGAVPSLPKAGVSATASAPMSREDEAVAALEGLGYRAAEARKM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V + +       ++IRLAL+ 
Sbjct: 181 VAKVAQDDLP---TEEMIRLALQQ 201


>gi|329118736|ref|ZP_08247436.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465171|gb|EGF11456.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 193

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +   +   ++IDV G+ Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGTLAEKHPPQIVIDVNGIGYEAEVSMQTFCALPPVGETVRLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS +   EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFADAEERAAFRQLVKVGGIGAKTALGILSAMNTAELAQAVAQEDVKRLSAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK                       +      + +  L+ LGY + +A  A
Sbjct: 121 AERMILELRGKL----------APANVSGGLAAPAQQDGGEDIVQTLLALGYSEREARAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 171 AKGI----PPGTEVGEGVRLALKNL 191


>gi|30248236|ref|NP_840306.1| Holliday junction DNA helicase subunit [Nitrosomonas europaea ATCC
           19718]
 gi|44888448|sp|Q820S3|RUVA_NITEU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|30180121|emb|CAD84123.1| probable Holliday junction DNA helicase subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 195

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 14/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   VL+DV G+ Y I  P+ T   L  IG+  TL     +R+D   L
Sbjct: 1   MIGRIAGLLLEKHPPLVLVDVNGIGYEIDVPMSTFCRLPGIGEQVTLHTHFWVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+++ +R  F  L  + G+GAR  + +LS ++  +L + ++ Q+S  + +IPGI  K 
Sbjct: 61  FGFMTEPERVLFRQLTKISGIGARTGLAILSGLSVNDLHQIVVSQDSTRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K              +   +       S   + ++AL  LGY   +A  A
Sbjct: 121 AERLLLELRDKI----------SPAITLPETGTAMASSTDKDILNALSALGYNDREANWA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +          S  I  +LR +S
Sbjct: 171 VGQL----SEGVTVSDGIMQSLRLLS 192


>gi|326622940|gb|EGE29285.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 187

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 3/187 (1%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           L++  GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L  
Sbjct: 2   LLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
             GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L  
Sbjct: 62  TNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
            +      +        +       A++ALV LGY   +A+  V  + + +   A    +
Sbjct: 122 DLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSETL 178

Query: 198 IRLALRA 204
           IR ALRA
Sbjct: 179 IRDALRA 185


>gi|226324735|ref|ZP_03800253.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758]
 gi|225207183|gb|EEG89537.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758]
          Length = 203

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L ED V++DV GV Y I+   + +  L  +G    +    ++++D ++L
Sbjct: 1   MISYIRGELVALEEDKVIVDVGGVGYGIFMSGQAMGQLPPVGSKVKIHTYLNVKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+      F LL  V G+G +  +G+L+++T  EL  +++ ++ K I+  PGI  K 
Sbjct: 61  YGFLNRDALSVFKLLIGVSGIGPKGGLGILAQLTPDELRFAVMSKDIKAISTAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K   +  V+   +   N       +      +A+ AL  LGYG  +A  A
Sbjct: 121 AEKLIVELKDKL-KIEDVLDHQVEAANGADEDTVNAQGLQADAVQALTALGYGSTEALQA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +         +++ AL+ +
Sbjct: 180 VRKV--EMDESTTVEDLLKGALKYL 202


>gi|262368599|ref|ZP_06061928.1| Holliday junction helicase subunit A [Acinetobacter johnsonii
           SH046]
 gi|262316277|gb|EEY97315.1| Holliday junction helicase subunit A [Acinetobacter johnsonii
           SH046]
          Length = 200

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D   L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   ++  F  L  V GVG ++A+G+LS ++   L+ ++  ++   + ++PG+  K 
Sbjct: 60  YGFLHQQEKIIFRTLLKVNGVGPKMALGILSTLSVDMLIHTVEHEDINTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  ++SS      S V + Q    +  S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKAMSSGAAPSNSTVEQIQF---TGNSAVAEAEAALQSLGYKPLEAQKL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +    + +  + S IIR AL++++
Sbjct: 177 VSAA---KGDFTEASDIIRAALKSMN 199


>gi|221064959|ref|ZP_03541064.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1]
 gi|220709982|gb|EED65350.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1]
          Length = 191

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G    L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +     + +  S   +   AL+ LGY   +A+ A
Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNSEQNDIQQALMALGYSDKEASAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LKK       S+ I+LAL+A+
Sbjct: 169 ----LKKLPPEVGVSEGIKLALKAL 189


>gi|319407733|emb|CBI81380.1| holliday junction DNA helicase RuvA [Bartonella sp. 1-1C]
          Length = 215

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 130/208 (62%), Gaps = 1/208 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E ++ D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +   I++ PG+  K+
Sbjct: 61  FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK K +  S    ++ +  +              +A+ AL+ LG+  D+ATTA
Sbjct: 121 SERIVSELKNKTLQFSKEDNKNPAFSSSLTFSSEEEYQPTNDALLALIKLGFDHDKATTA 180

Query: 181 VVSVLKKEK-NIADDSQIIRLALRAISC 207
           + S +   K      + ++R +L+ +S 
Sbjct: 181 LASAVSALKGETVSSALLVRHSLKLLSS 208


>gi|284039351|ref|YP_003389281.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74]
 gi|283818644|gb|ADB40482.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74]
          Length = 198

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V+IDV GV Y ++  ++T + L   GD   LF+    R+D   L
Sbjct: 1   MIAYLDGTLSHKEATHVIIDVHGVGYSVHISLQTYAVLPGGGDRIKLFIHHLFREDSQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F+ L  V GVG   A+G+LS +   +L  +I+ +N + +  I GI  K 
Sbjct: 61  YGFANADEKSLFLDLIGVSGVGPNTALGMLSAMQPGDLRLAILGENVRAVQAIKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K      V                +       +++ALV LG+ +  A  +
Sbjct: 121 AQRIILELRDKMKRAGVVPD------GPSYRQQAAANPVREESLAALVALGFPKPTAEKS 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   LK +  +     +IR ALR 
Sbjct: 175 VDDALKADPAL-SVEDVIRRALRQ 197


>gi|171915820|ref|ZP_02931290.1| Holliday junction DNA helicase motor protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 203

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++     + + +DV GV Y+   P+ T   L        L    ++ +    L
Sbjct: 1   MIAYLRGHLVEALPNQLTVDVNGVGYLCLVPLSTYDRLAGTQGEVRLLTHLNITERDHTL 60

Query: 61  FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           FGF +  +R  F LL + V G+G ++A+ VLS +   +  +++I  +   +++I G+  K
Sbjct: 61  FGFATAEERDLFRLLINRVSGIGPKMALAVLSGMAVGDFKDNVIRNDVTALSRISGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K   + +      +             +   +A+ AL+ LG+ Q +A  
Sbjct: 121 TAERIVLELKDKVGIVDTW---QAARSTGNSLVPDPTQAAQTDAVLALIALGFKQTEAQK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  ++KK   +    ++IR ALR +
Sbjct: 178 TVQDLVKKAGGVVSADKLIRDALRNL 203


>gi|58425878|gb|AAW74915.1| holliday junction binding protein, DNA helicase [Xanthomonas oryzae
           pv. oryzae KACC10331]
          Length = 212

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 19  MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 79  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 138

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 139 AERMVVELRDRAADFSSGAPITGQL----------GPDAISEATVALQQLGYKPAEAARM 188

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A    +IR AL+A
Sbjct: 189 ARDAGAEGGEVA---TVIRKALQA 209


>gi|302386617|ref|YP_003822439.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum
           WM1]
 gi|302197245|gb|ADL04816.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum
           WM1]
          Length = 202

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  ++ED V+I+   V + I+ P+  L  L  IG    L+    +R+D + L
Sbjct: 1   MISFIKGPLAEIFEDTVVIESGNVGFEIHAPLSVLEKLPGIGVEIKLYTYFQVREDAMCL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D Q F  L SV G+G + A+G+LS +   EL  +II  ++K I++ PG+  K 
Sbjct: 61  FGFLNRQDLQMFQQLISVNGIGPKGALGILSALRPEELRRAIISGDAKAISKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K      + +   S   +    +         A+ AL  LGY   +A  A
Sbjct: 121 AQRIILDLKDKI----DLAEILPSGFTESADKVILSGGVTEEALEALTALGYSAAEAGRA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  +         +++ +L+ ++
Sbjct: 177 VRQV--EVTESMTVEDVLKASLKHLA 200


>gi|163753887|ref|ZP_02161010.1| Holliday junction DNA helicase [Kordia algicida OT-1]
 gi|161326101|gb|EDP97427.1| Holliday junction DNA helicase [Kordia algicida OT-1]
          Length = 193

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +       V+I+  GV Y I   + T S +    +   LF   H+R+D   L
Sbjct: 1   MITHIQGKLVEKNPTDVVIECNGVGYFINISLTTYSQIPN-QENIKLFTHLHVREDAQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F LL SV G+G   A  +LS +T+ ++ E+I   +   I  + GI  K 
Sbjct: 60  YGFFQKAERAVFRLLISVSGIGTSTARTMLSSLTSEQICEAIGSGDVPTIQGVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + L  + +  MS  N  +             +SAL  LGY + Q+   
Sbjct: 120 AQRVIIELKDKVLKLYDLDEVSMSQNNTNK----------EETLSALEVLGYTRKQSERV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++K E       Q+I++AL+ +
Sbjct: 170 LDKIIK-EMPAGSVEQLIKMALKNL 193


>gi|227538550|ref|ZP_03968599.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241469|gb|EEI91484.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 194

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M     G +      +V++DV G+ Y I+  + T + L K  + C LF+   +R+D   L
Sbjct: 1   MYEYFNGKLVFKAPTHVVLDVNGIGYYIHISLNTFA-LIKDQENCKLFISFQVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L SV G+G      +LS IT  E+  +II     VI +I GI  K 
Sbjct: 60  FGFATEGERQLFEHLISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +   + + +  S    A+SAL+ LG+ ++QA   
Sbjct: 120 AQRLILELQDKLKKQGP---------DALISPVATKQSVPEEALSALIMLGFVKNQAEKV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +++  E ++    Q+I+LAL+ +
Sbjct: 171 LNTIINTEPDL-SVEQLIKLALKRL 194


>gi|254496522|ref|ZP_05109393.1| holliday junction DNA helicase [Legionella drancourtii LLAP12]
 gi|254354261|gb|EET12925.1| holliday junction DNA helicase [Legionella drancourtii LLAP12]
          Length = 199

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G+I        ++++V GV Y +   + T   L  +     L + T +R+D + 
Sbjct: 1   MIGWLDGHIVDKHQPGKLVLNVNGVGYDVETSLNTFFQLDTLSGSIGLHIHTVVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVG ++A+ +LS IT  E ++ I  + +  + ++PGI  K
Sbjct: 61  LYGFLDKQERALFRALIKVNGVGPKMAIAILSSITPNEFIQCIKQEKAAFLTKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++      S          +       ++      A+SAL  LGY   +A  
Sbjct: 121 TAERLVIEMRDSIKQFSE-------PASDLSLKPINLIRGQDEAVSALEALGYKPQEALK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  +    K+     Q+IR AL+ +S
Sbjct: 174 AVNKLDDGHKS---CEQLIREALQILS 197


>gi|88801662|ref|ZP_01117190.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii
           23-P]
 gi|88782320|gb|EAR13497.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii
           23-P]
          Length = 193

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V++D  GV Y+++  + T + L    +   L+    +R+D   L
Sbjct: 1   MITQVRGRLVEKNPTEVVVDCNGVGYLLHISLNTYAALPA-DENVVLYTHLSVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R  F  L SV GVG  +A  +LS +TA E+ ++I  +N  +I  + GI  K 
Sbjct: 60  FGFINKTERAIFKFLISVSGVGPSIARTMLSSMTAEEIQQAIASENVALIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +    + +  MS  N  +            A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIVDLKDKIVKTFDLDEVSMSPSNTNKG----------EALSALEVLGFQRKQSDKL 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +++K+  N A   QII+LAL+++
Sbjct: 170 VATIVKEYPN-ATIEQIIKLALKSL 193


>gi|171464161|ref|YP_001798274.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|229560114|sp|B1XS25|RUVA_POLNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171193699|gb|ACB44660.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 193

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +  ++   +L+D QG+ Y +  P+ TL  L + G   TL     +R+D  +L
Sbjct: 1   MIGRIQGTLVSVHPPRLLVDCQGISYEVDVPMSTLYQLPQAGQKITLLTHFQVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R+ F  L  + GVG+R A+ VLS ++  EL ++I LQ +  + Q+PGI  + 
Sbjct: 61  FGFATETEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKRT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELKGK      V       +             +   + AL+ LGY + +A  A
Sbjct: 121 AERLCLELKGKLAPDLGVAGGKPQAI-----------ETSSEVLQALLALGYSEKEALLA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +          S  IR+ L+ +S
Sbjct: 170 LKQI----PADTSISDGIRMGLKYLS 191


>gi|90134315|sp|Q6F992|RUVA_ACIAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 201

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++  F  L  V GVG ++A+G+LS ++    + +I   +   + ++PG+  K 
Sbjct: 60  YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +LS  VQ              S  S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKALS--VQATTGSTVTSAQIQFSSNSPIAEAEAALQSLGYKPIEAQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V       AD   +IR AL+++
Sbjct: 178 IAAVKADYTEAAD---LIRAALKSM 199


>gi|319899376|ref|YP_004159473.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella
           clarridgeiae 73]
 gi|319403344|emb|CBI76903.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella
           clarridgeiae 73]
          Length = 213

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/208 (37%), Positives = 129/208 (62%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  +L ++I L +  +I++ PG+  K+
Sbjct: 61  FGFTTKSEKEWFCLLQNVPGVGAKVALALLGTLSINDLSQAITLNDIAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK K  +L S         +              +A+ AL+ LG+  DQA TA
Sbjct: 121 SERIVSELKNK--ALLSKENNKSFAFSSSSLPSEEKHQPTNDALLALIKLGFDHDQAATA 178

Query: 181 VVSVLKKEK-NIADDSQIIRLALRAISC 207
           V S L   K      + ++R +L+ +S 
Sbjct: 179 VTSALSSLKGETVSSALLVRHSLKLLSS 206


>gi|153810824|ref|ZP_01963492.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174]
 gi|149833220|gb|EDM88302.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174]
          Length = 203

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +    E+ V+++  G+ Y I+    ++  + +I     +     +R+D ++L
Sbjct: 1   MISFIRGLVADTTENAVILENNGIGYEIFMTGSSIEQVSRIDGEVKIHTYFQVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G + A+GVL+ +TA EL  +++  + K I++ PGI  K 
Sbjct: 61  YGFLSKDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K     +  ++              +      A  AL+ LGY    A  A
Sbjct: 121 AQKLILELKDKLKLEDAFEKKLAHEQEAASVSGFLIHDGRQEAAEALIALGYSSTDAMKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V     +  D   +++ AL+ +
Sbjct: 181 VRKVTDVSPD--DVEALLKAALKQL 203


>gi|294678733|ref|YP_003579348.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB
           1003]
 gi|294477553|gb|ADE86941.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB
           1003]
          Length = 222

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I     D+VLIDV+GV YI++   RT + L  +G+ C L+ E  +R+D ++L
Sbjct: 1   MIGRIAGVILHRAMDHVLIDVRGVGYIVHVSSRTAANLPPVGEACALYTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  +    +  ++ L +   I   PG+  K+
Sbjct: 61  FGFPTLIEKEWHRLLTSVQGIGAKASLAILGTLGPEGVSRALALGDWNAIKAAPGVGPKL 120

Query: 121 ASRIMTELKGKAISL--------------SSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
           A R++ ELK KA ++               ++++     V +         +F   A+SA
Sbjct: 121 AQRVVMELKDKAPTVMAMGGTLTVDTAPSDALIETAPKPVKRPAPAATRQVNFTAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGY    A TAV     +     D +++IR ALR ++
Sbjct: 181 LTNLGYSPSDAATAVARA-SENPEATDTAKLIRTALRLLA 219


>gi|118594338|ref|ZP_01551685.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium
           HTCC2181]
 gi|118440116|gb|EAV46743.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium
           HTCC2181]
          Length = 193

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+IKG +       +LID QGV Y I  P+ T   L   G   TL     +R+D   L
Sbjct: 1   MIGRIKGYLLEKIPPIILIDCQGVGYEIEVPMTTFFDLPDEGSEITLLTHLIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  V G+GA+VA+ +L  I +++L ++I   +  ++ +IPGI  K 
Sbjct: 61  FGFATAAERQMFRQLIKVNGIGAKVALSILGSIGSSDLADAIQHDDINMLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +   L                 +    +   +  +AL++LGY    A+ A
Sbjct: 121 AERLVLELKDRLKDLHIDPS------------VKKHATHIEDIENALISLGYSAKDASMA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +L +  +I D    IR AL+++S
Sbjct: 169 I-KLLPENISINDG---IRQALKSLS 190


>gi|160942099|ref|ZP_02089414.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434990|gb|EDP12757.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC
           BAA-613]
          Length = 209

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  + ED ++++   V   I+ P+  L  L  +G   T++    +R+D + L
Sbjct: 1   MISYVKGPLMAIEEDVIVVEAGHVGLAIHVPVSLLPELPGMGKEVTVYTYFQVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   DR  F  L  V G+G + A+G+LS +   +L  +I+ ++ K +A+ PGI  K 
Sbjct: 61  YGFLHSQDRDMFRQLLGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120

Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ +LK K      L ++            A +  +   A  A+ ALV LGY   +A
Sbjct: 121 AQRLILDLKDKISMDDVLGNMAGGAGMGAADTGASVAGLVEAAKEAVQALVALGYTNTEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + AV  V  +  +      +++ +L+ +S
Sbjct: 181 SRAVKQV--EVTDGMTSEDVLKASLKHLS 207


>gi|295109923|emb|CBL23876.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus obeum
           A2-162]
          Length = 203

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 2/203 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +    E+ V+++  G+ Y I+    ++    +      +    H+R+D ++L
Sbjct: 1   MISFIRGLVADTTENSVILEAGGIGYEIFMTGSSIEQASRSDGKVKIHTYFHVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G + A+GVL+ +TA EL  +++  + K I++ PGI  K 
Sbjct: 61  YGFLSRDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K     +  ++              +      A+ ALV LGY   +A  A
Sbjct: 121 AQKLILELKDKLKLEDAFEKKLAHEQEAADISGSVLHDGRQEAVEALVALGYSSTEAMKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V     +  D   +++ AL+
Sbjct: 181 VRKVTDVSPD--DVEGLLKAALK 201


>gi|78485238|ref|YP_391163.1| Holliday junction DNA helicase RuvA [Thiomicrospira crunogena
           XCL-2]
 gi|123755243|sp|Q31H84|RUVA_THICR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78363524|gb|ABB41489.1| Holliday junction DNA helicase subunit RuvA [Thiomicrospira
           crunogena XCL-2]
          Length = 200

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 109/204 (53%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +LI+V GV Y +  P+ T   +G++GD   L    H+R+D + L
Sbjct: 1   MIGFLSGTLHAKLPPQILINVNGVGYEVEAPMSTFYAIGEVGDEVMLLTHMHVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+L+R  F  L  V G+GA++A+G+LS ++  + V  + + ++  + +IPG+  K 
Sbjct: 61  FGFASELERSLFKELIKVNGIGAKMAIGILSAMSVNDFVGLVDVGDAPALTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +     +      S V+ +     +  +   +A+ AL++LGY   QA   
Sbjct: 121 AERLVIEMRDRLKGWGN---GASSNVSSKTMVSSAPHNQKASAVEALISLGYKTAQADKM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +V    ++     + I+ AL++
Sbjct: 178 VQAV----ESGLSLEETIKKALQS 197


>gi|303231814|ref|ZP_07318530.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513521|gb|EFL55547.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 202

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + ++ +  +  S +   Q+   +    +  AI ALV+LGY Q      
Sbjct: 120 AERLVLELKDKLVKMTQISVETPSAI---QSIGVTHSGPSGEAIEALVSLGYAQKDVEAL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+        D S +I+  L  +
Sbjct: 177 VESL---NDGSKDVSALIKACLVEL 198


>gi|313904087|ref|ZP_07837467.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6]
 gi|313471236|gb|EFR66558.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6]
          Length = 203

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG IE + ED V++D  G+ + ++ P  +L+   + G+   L+    ++QD + L
Sbjct: 1   MIGFIKGVIEEITEDSVVVDNNGIGWQVFVPGSSLAGNIRQGEEIKLYTYLSVKQDSLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  DR+ F+ L  V G+G + A+G+LS ++A +L  +++  ++  IA+ PGI  K 
Sbjct: 61  FGFLNRDDREVFIRLLDVSGIGPKGALGILSVMSADDLRFAVLSDDAAAIAKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A + + ELK K   L    ++ ++   ++     +      +A+ ALV LGY   +A  A
Sbjct: 121 AQKAVLELKDKF-KLDDAFEKKLAHEQEKAGAAAAQAGAETDAVQALVALGYSGTEAMQA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D   I++ AL+ +
Sbjct: 180 VRKV--GAGEDMDSEAILKAALKYL 202


>gi|254468402|ref|ZP_05081808.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13]
 gi|207087212|gb|EDZ64495.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13]
          Length = 189

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +      +V +D  G+ Y I  P+ T   L ++     L V   +R+D   L
Sbjct: 1   MIGSIRGILIDRSPPWVQVDCGGIGYEIEVPMSTYYHLPELQSDIFLHVHMVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  ++  F  L  + G+GA+VA+ +LS ++  +   +I  Q+  ++ +IPGI  K 
Sbjct: 61  FGFLTKEEKSSFKSLIKINGIGAKVALSILSGVSMDQFSNAIEQQDVSLLVKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K         QD+      Q           + + AL  LGY +      
Sbjct: 121 AERLIVELKDK---------QDLKLQQSSQ-----HSKNLTDIMDALEALGYSKSDIQKV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +    K      + ++ I+ AL+ +S 
Sbjct: 167 I----KNFNEDINVNEGIKQALQWLSS 189


>gi|163855209|ref|YP_001629507.1| Holliday junction DNA helicase RuvA [Bordetella petrii DSM 12804]
 gi|229560006|sp|A9I8F2|RUVA_BORPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163258937|emb|CAP41236.1| holliday junction DNA helicase [Bordetella petrii]
          Length = 190

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 106/205 (51%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       + +DV G+ Y I  P+ TL  L ++G   TL     +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTICVDVNGLGYDIEVPMSTLYALPELGARVTLHTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++ ++L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFATAAERGAFRELIKVSGIGARTALSVLSGLSVSDLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   ++P    + ++AL+ LGY   ++  A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATAHAVPDSQTDILNALLALGYSDKESQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LKK       S+ IRLAL+A+
Sbjct: 168 ----LKKLPEGTGVSEGIRLALKAL 188


>gi|163786536|ref|ZP_02180984.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1]
 gi|159878396|gb|EDP72452.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1]
          Length = 193

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       V+ID  GV Y I   + T S +    +   L+    +R+D   L
Sbjct: 1   MITHLEGKLVEKNPTDVVIDCNGVGYFINISLHTFSQIPDR-ENLRLYTYLQVREDSHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F LL SV G+GA  A  +LS +T  ++ E I   +  +I  + GI  K 
Sbjct: 60  YGFSSKTEREIFKLLISVSGIGANTARTMLSSLTPDQVKEGIASGDVALIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  +          ++  +    +    A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIIDLKDKVLKVYGI----------DELSLIPNNTHKDEALSALDVLGFNKKQSEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L+ + + A   QII+ AL+ +
Sbjct: 170 VDRILQTQPD-ALVEQIIKEALKNL 193


>gi|167627795|ref|YP_001678295.1| Holliday junction DNA helicase RuvA [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597796|gb|ABZ87794.1| Holliday junction DNA helicase, subunit A [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 218

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG+I    +L+    +R+D  +L
Sbjct: 2   MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQVSLYTHFVVREDAQQL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + +D++ F  L  V G+GAR A+ +LS + +T L+  I  ++  ++A +PGI  K 
Sbjct: 62  YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK---------EQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +    S  +           Q       S    ++ AL+ LG
Sbjct: 122 AERLVVEIYDKLLKMANEIYSQSSNTSASINANSVQHAQTPAAISNSIFSESVDALLALG 181

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A   +   +         ++ IR AL+
Sbjct: 182 YKQKDAEKMIRGTI---GESTTAAEAIRKALQ 210


>gi|326791465|ref|YP_004309286.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM
           5427]
 gi|326542229|gb|ADZ84088.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM
           5427]
          Length = 197

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E + E+ ++I+V GV Y ++C  RTLS L    +   +++  H+++D   L
Sbjct: 1   MITYLVGTLEHIGENTLVIEVYGVGYEVFCSSRTLSELNGTREKVKIYIHEHIKEDGHDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    DR+ F  L SV G+G +  M V +  ++ E++E I+ Q+SK ++++ GI  K 
Sbjct: 61  YGFYHMEDRELFRKLISVSGIGPKGGMQVFNTYSSQEVIEIILNQDSKALSKVSGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK     L       +    K++       S    AI AL  LGY   +A  A
Sbjct: 121 AQRIILELKDSIGKLFVPDLSLLETGLKDE-------SAKAEAIEALEALGYAAQEARKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++   +   A+  ++I+ AL  +
Sbjct: 174 VEAIYDYK---ANSEELIKKALSLL 195


>gi|325264009|ref|ZP_08130742.1| holliday junction DNA helicase RuvA [Clostridium sp. D5]
 gi|324031047|gb|EGB92329.1| holliday junction DNA helicase RuvA [Clostridium sp. D5]
          Length = 207

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  + V++DV GV Y IY P + +  L + G    +    ++R+D ++L
Sbjct: 8   MISYIRGELAAVETEKVIVDVGGVGYGIYMPGQAMGLLPQPGHEVKIHTYLNVREDAMQL 67

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS+++  +L  +++  + K I+  PGI  K 
Sbjct: 68  FGFLTRDDLEVFKLVIGVSGIGPKGGLNILSQLSPDDLRFAVMAGDVKAISAAPGIGKKT 127

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K   LS       +      A   +       A+ ALV LGYG  ++  A
Sbjct: 128 AEKLIIELKDK---LSIEDVLTHAAEGSAAAVPVNNGGIQSEAVQALVALGYGSTESLRA 184

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V   E +      +++ AL+ +
Sbjct: 185 VKQV---ELDNPTVEDVLKEALKKM 206


>gi|294501382|ref|YP_003565082.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551]
 gi|295706729|ref|YP_003599804.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319]
 gi|294351319|gb|ADE71648.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551]
 gi|294804388|gb|ADF41454.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319]
          Length = 203

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +YV+I+  G+ Y ++ P   +  + +     T++   ++R+D I L
Sbjct: 1   MFDYIKGTVTYINPEYVVIENNGIGYQVFTPNPYVFSIDE--QPKTVYTYQYVREDVIAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   +  FM L SV G+G +  + +L+     ++V+++  ++ K + + PG+  K 
Sbjct: 59  YGFASREQKDLFMKLISVSGIGPKGGLAILASGNPAQVVQAVEEEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +       +      Q            AI AL  LGY + +    
Sbjct: 119 ARQMILDLKGKLHDIVPDAVPSLFADLDAQEVKSQSSEALDEAIEALKVLGYAEREIKKI 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +++K+        Q I+ AL+ +
Sbjct: 179 VPALMKE---TMTTDQYIKEALKRL 200


>gi|262375568|ref|ZP_06068801.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145]
 gi|262309822|gb|EEY90952.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145]
          Length = 200

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D   L
Sbjct: 1   MIGCLIGEVLALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  ++  F  L  V GVG ++A+G+LS ++   L+ ++  ++   + ++PG+  K 
Sbjct: 60  YGFINAQEKTIFRTLLKVNGVGPKMALGILSTLSVEMLIHTVEHEDINTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +++S      S   + Q       S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKAMASGAAPSNSTAPQIQF---MGNSAVAEAEAALQSLGYKPVEAQKL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +    +    + S IIR AL++++
Sbjct: 177 VNAA---KGEFTEASDIIRAALKSMN 199


>gi|266625272|ref|ZP_06118207.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM
           13479]
 gi|288862827|gb|EFC95125.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM
           13479]
          Length = 202

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  ++ED V+I+   +   I+ P+  L  L  IG    L+    +R+D + L
Sbjct: 1   MISYVKGPLVDIFEDTVVIEAGYIGLEIHVPLSVLDRLPGIGMETVLYTYFQVREDGMCL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D Q F  L SV G+G + A+GVLS +T  EL  +II  ++K I++ PGI +K 
Sbjct: 61  YGFLNRQDLQMFRQLISVSGIGPKGALGVLSAMTPDELRLAIITGDAKAISRAPGIGVKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K      +  Q       E+    S    A  A+ ALV LGY   +A  A
Sbjct: 121 AQRVILDLKDKIDMADVLPAQ----FAAEEEPGISAGGVAKEAVEALVALGYSTAEANRA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  +         +++ +L+ ++
Sbjct: 177 VGKV--EVTGDMTSEDVLKASLKHLA 200


>gi|303230216|ref|ZP_07316984.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515142|gb|EFL57116.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 202

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + ++ +  +  + +   Q    +    +  AI ALV+LGY Q      
Sbjct: 120 AERLVLELKDKLVKMTQISVETPAAI---QPIGVTHSGPSGEAIEALVSLGYAQKDVEAL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+        D S +I+  L  +
Sbjct: 177 VESL---NDGSKDVSALIKACLVEL 198


>gi|297621995|ref|YP_003710132.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia
           chondrophila WSU 86-1044]
 gi|297377296|gb|ADI39126.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia
           chondrophila WSU 86-1044]
          Length = 202

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +        +++  G+ Y ++ P  T   L +IG    L     +R+    L
Sbjct: 1   MIYFIRGILIQSTPGIAILETGGIGYKVHIPASTYPKLPQIGQEALLHTSMVVREVSQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L +V G+G ++A+ ++  ++  E+  +I  Q   +I+++PGI  K 
Sbjct: 61  YGFFYSEERDLFEELTTVSGIGPKIALALIGHLSVEEMHAAIGNQEVAMISKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K           +      Q    S      +A+SAL+NLGY Q  A  A
Sbjct: 121 AQRLVIELRDKVQKGGKY---SLPSDFAIQVGTDSRGQKIADAMSALLNLGYNQSTAQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +   L       D +++I  AL+
Sbjct: 178 LKKSLSNFPETIDLTELITDALK 200


>gi|294669790|ref|ZP_06734856.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308356|gb|EFE49599.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 194

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  + +   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKQPPQIVIDVNGVAYEADVSMQTFYNLPPLNETVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFGTAAERATFRQLVKVSGIGAKTALGILSAMTADELAQAVAQEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK              V+              + I  L+ LGY   +A  A
Sbjct: 121 AERMILELRGKLSG---------GTVSDGLFAQPQAADETDDIIGTLLALGYSDREARAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +        +  + +RLAL+ +
Sbjct: 172 VKGIA----PGTEVGEGVRLALKNL 192


>gi|113866527|ref|YP_725016.1| Holliday junction DNA helicase RuvA [Ralstonia eutropha H16]
 gi|123033276|sp|Q0KEC3|RUVA_RALEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113525303|emb|CAJ91648.1| holliday junction resolvasome, DNA-binding subunit RuvA [Ralstonia
           eutropha H16]
          Length = 193

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L  +G   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEVDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL ++I LQ +  + +IPGI  K 
Sbjct: 61  YGFGTASERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +           ++P  A++ ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGAELGHVPGTPAVPDSAVDVLNALLALGYSEKEAAAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191


>gi|323138242|ref|ZP_08073314.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242]
 gi|322396494|gb|EFX99023.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242]
          Length = 205

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 136/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y+++C  RTL  L + G+   L +ET +R+D IRL
Sbjct: 1   MIGKLKGLIDSYGEDFVILDVNGVGYVVHCSSRTLQKLPRAGEAAALAIETQVREDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++++R WF LLQ+VQGVGA+VA+G+LS ++++E+  +I  Q+  ++A+ PG+  K+
Sbjct: 61  FGFEAEVERDWFRLLQTVQGVGAKVALGILSILSSSEIASAIATQDKAMVARAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA +  +V         ++     S PS   +AISALVNLGYG+ QA  A
Sbjct: 121 AARIVAELKDKAPAFGAVDPVVAKLAGEDAD--ASAPSAVRDAISALVNLGYGRPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     A+   +IR  LR ++
Sbjct: 179 VAASVKALGEGAETGALIRQGLRELA 204


>gi|239827859|ref|YP_002950483.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70]
 gi|259495646|sp|C5D5E9|RUVA_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239808152|gb|ACS25217.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70]
          Length = 201

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ +  +Y++ID  G+ Y I+ P    S         T++   ++R+D + L
Sbjct: 1   MIEFVRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDTLAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     +LVE+I  +N   + + PG+  K 
Sbjct: 60  YGFRTREERTLFAKLLQVSGIGPKGGLAILAAGQPEQLVEAIEQENETFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  ++++    D+  + +E A      S    AI AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTAVTAKTFPDLFHLQEESAR--PHLSALEEAIEALKALGYAEREIQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S++K+        Q ++ AL+ +
Sbjct: 178 VPSLMKEN---LSTDQYVKRALQQL 199


>gi|291458999|ref|ZP_06598389.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418253|gb|EFE91972.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 203

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L E  VL++  G+ Y I  P   L  L   G+   +     +R+D + L
Sbjct: 1   MIRYVRGILRELREGMVLVEAGGLGYGIRVPASLLPALPPPGEEVKIHTYFSVREDAMEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  DR  F+ L  V G+G + A+G+LS +   EL  +I   + + I   PGI  K 
Sbjct: 61  FGFLTAEDRDIFVRLLGVSGIGPKGALGILSVLRPEELRRAIFSGDIRSIQAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K      +     S     +    ++   A  A+ AL++LGYG  +A  A
Sbjct: 121 AERLILDLKDKIDPPDFLPA--FSDGEIPEGGEEALRDSAKEALEALLSLGYGMAEAQRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V   E    DD  +++ +LR ++
Sbjct: 179 VRRVKLTEDMTPDD--VLKQSLRHLA 202


>gi|188591242|ref|YP_001795842.1| holliday junction DNA helicase ruva [Cupriavidus taiwanensis LMG
           19424]
 gi|229560026|sp|B2AH73|RUVA_CUPTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170938136|emb|CAP63122.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Cupriavidus taiwanensis LMG 19424]
          Length = 193

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L  +G   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + G+GAR+A+ VLS ++  EL ++I LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +           ++P  A++ ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGAELGHAPGTPAVPDSAVDVLNALLALGYSEKEAAAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|296132699|ref|YP_003639946.1| Holliday junction DNA helicase RuvA [Thermincola sp. JR]
 gi|296031277|gb|ADG82045.1| Holliday junction DNA helicase RuvA [Thermincola potens JR]
          Length = 200

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  + EDY++IDV GV Y +Y P   +  L   G   T+F   ++R+D ++L
Sbjct: 2   MISFLRGELNYIGEDYIIIDVHGVGYKVYVPASFIGKLPACGQPVTVFTHLYVREDVMQL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    + + F +L  V G+G +VA+ VLS + A+   ++I+ +   V+ Q+PGI  K 
Sbjct: 62  YGFPDREELELFEVLLQVSGIGPKVAVSVLSAVPASSFKQAIVNEQVGVLTQVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L    Q      N               A+ AL+ LGY  ++A  A
Sbjct: 122 AQRMILELKDKLGKLPGRGQAPPVSAN--------FAPNTEEAVQALIALGYAPNEARKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+     +    + I+ AL  ++
Sbjct: 174 VNKVVNTHPELG-VEESIKKALLELA 198


>gi|154504992|ref|ZP_02041730.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149]
 gi|153794875|gb|EDN77295.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149]
          Length = 375

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G + GL  D  ++DVQGV Y IY P ++LS LG IG    +    ++R+D ++L
Sbjct: 176 MISYIRGELAGLERDKAIVDVQGVGYGIYMPEQSLSLLGPIGCEVKIHTYLNVREDAMQL 235

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS ++A EL  +++  ++K I   PGI  K 
Sbjct: 236 FGFLTRDDLEVFRLVIGVSGIGPKGGLNILSCLSADELKFAVLSGDAKAICAAPGIGKKT 295

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K      +  +  S    E             A+ ALV LGYG  ++  A
Sbjct: 296 AEKLIIELKDKLDLKEML--EPRSAAAAEIPSDGRNGDIQTEAVQALVALGYGNAESLKA 353

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V            +++ AL+ +
Sbjct: 354 VRQV----TEYTSVEDVLKEALKKM 374


>gi|144898113|emb|CAM74977.1| Holliday junction ATP-dependent DNA helicase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 209

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 124/205 (60%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG I+ L +D+ ++DV GV Y+++C  RTL  L ++G    L VETH+R+D I L
Sbjct: 1   MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +R WF LL +VQGVGA+VA+ +LS  T  +L+++I  Q+  ++ +  G+  K+
Sbjct: 60  YGFLEPGERDWFNLLITVQGVGAKVALAILSVATPEQLLQTIAAQDKVMLTRASGVGPKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA  +S       +        +        +AISALVNLGY + +A  A
Sbjct: 120 ALRILTELKDKAGKMSLGGFASSAGTAAISTPV-GDGGLMEDAISALVNLGYKRLEAFEA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V K+    AD S +IR AL+ +
Sbjct: 179 VGIVAKELGEGADSSTLIRHALKRL 203


>gi|299135919|ref|ZP_07029103.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8]
 gi|298602043|gb|EFI58197.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8]
          Length = 198

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 8/201 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I     + V++D  GV Y +   I T + LG  G    L V TH+R+D + L
Sbjct: 1   MIAYLRGRILSKASNAVIVDCNGVGYELAISITTFTELGAEGAEAKLHVHTHVREDALAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L ++ G+G ++A+ VLS I+A  LV +I   +   + +IPGI  K 
Sbjct: 61  FGFAELTEKRLFEKLLTISGIGPKLAITVLSGISAERLVGAIRAGDHATLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K          DM     E     S+ + A + +SALVNLGY +  A  A
Sbjct: 121 AERVVLELKDKL--------DDMVGSTPETGARFSLGTVADDVLSALVNLGYARPVAQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
           V +  K      D  Q+ R A
Sbjct: 173 VETAAKDAAVAGDFEQLFRAA 193


>gi|319404769|emb|CBI78370.1| holliday junction DNA helicase RuvA [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 215

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 130/208 (62%), Gaps = 1/208 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E ++ D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +   I++ PG+  K+
Sbjct: 61  FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRTPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK K +  S    ++++  +              +A+ AL+ LG+  ++A TA
Sbjct: 121 SERIVSELKNKTLQFSKEDNKNLAFSSSLTFSSEEEYQPTNDALLALIKLGFDHEKAATA 180

Query: 181 VVSVLKKEK-NIADDSQIIRLALRAISC 207
           + S +   K      + ++R +L+ +S 
Sbjct: 181 LASAVSALKGETISSALLVRHSLKLLSS 208


>gi|269797654|ref|YP_003311554.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008]
 gi|269094283|gb|ACZ24274.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008]
          Length = 202

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 112/205 (54%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      +II    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +   Q    +    A  AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKIAKMTHISAESPAAI---QPIGVTASGAAGEAIEALVSLGYSERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+   +    D S++I+++L  +
Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198


>gi|149370922|ref|ZP_01890517.1| Holliday junction DNA helicase [unidentified eubacterium SCB49]
 gi|149355708|gb|EDM44266.1| Holliday junction DNA helicase [unidentified eubacterium SCB49]
          Length = 193

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +       V+++  GV Y I   + T S L    +   L+    +R+D   L
Sbjct: 1   MVHHVQGKMIEKNPTDVVVECNGVGYFINISLHTFSQLPST-ENVLLYTHLQVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R+ F LL SV GVGA +A  +LS +   +++++I+ ++  VI  + GI  K 
Sbjct: 60  YGFSTKVEREIFRLLISVSGVGASIARTMLSSLNPKQVMDAIVSEDVSVIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K I +  +                S  +    A+SAL  LG+ +  A   
Sbjct: 120 AQRVILDLKDKIIKVFGM----------SAISAVSSNTNKNEALSALETLGFARKVAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              ++++    A   +II+ AL+ +
Sbjct: 170 CDKIVQQHPE-ATVEEIIKHALKNL 193


>gi|331091226|ref|ZP_08340067.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404673|gb|EGG84212.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 201

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + E+  +IDV GV Y I+ P +++  L  + +   L    H+++D ++L
Sbjct: 1   MISYIRGELVAVEEEKAVIDVGGVGYGIFMPAQSMGKLPPLHEEVRLHTYLHVKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F L+  V G+G + A+ +LS ++A +L  +++  + K I+   GI  K 
Sbjct: 61  YGFLTRDDLKVFKLVIGVSGIGPKGALNILSNLSADDLRFAVLSNDVKAISAAQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K      +         +E A           A+ ALV LGYG  ++  A
Sbjct: 121 AEKLIIELKDKLSMDDVLEHM---VQEEEVAVTGQNSGVQAEAVQALVALGYGNTESLRA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +    +D   +++ ALR +
Sbjct: 178 VRRV--EVNADSDVETVLKQALRFM 200


>gi|49476147|ref|YP_034188.1| Holliday junction DNA helicase motor protein [Bartonella henselae
           str. Houston-1]
 gi|81648457|sp|Q6G5R0|RUVA_BARHE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49238955|emb|CAF28253.1| Holliday junction DNA helicase ruvA [Bartonella henselae str.
           Houston-1]
          Length = 205

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 131/207 (63%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D+++++VQGV Y+++   R    L  +G+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFDDHIIVNVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFIAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK KA+  S  V            H+        +A+SAL+ LG+ +DQA  A
Sbjct: 121 SERIVSELKSKALPFSEKVIHSAPL-----PHLEVTNQPTNDALSALIKLGFERDQAARA 175

Query: 181 VV-SVLKKEKNIADDSQIIRLALRAIS 206
           +  +V   E      + +IR +L+ +S
Sbjct: 176 LALAVNALEGETVSSALLIRHSLKLLS 202


>gi|312113736|ref|YP_004011332.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218865|gb|ADP70233.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC
           17100]
          Length = 209

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 85/209 (40%), Positives = 128/209 (61%), Gaps = 4/209 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ +  D+ +IDV GV Y + C  RTL  L K G+   L +ET++R+D I+L
Sbjct: 1   MIGKLKGIVDAVGADHAIIDVGGVGYEVACSPRTLGAL-KPGEPVALSIETYVREDAIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R WF LLQSVQGVGA+VA+ +L+ + + +L ++I +Q+   + + PG+  K+
Sbjct: 60  YGFLSEAERGWFRLLQSVQGVGAKVALSILATLDSAQLAQAIAMQDRVSVTRAPGVGPKV 119

Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ ELK KA  L+   + +    S          + PS A  A+SALVNLGY   QA
Sbjct: 120 ALRIVNELKDKAPPLAFSVAAIAAPASGSASAAIPASAAPSPAAEAVSALVNLGYAPLQA 179

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ + L K    A    +IRL L+ ++
Sbjct: 180 NAAISTALGKAGEDARTEDLIRLGLKDLA 208


>gi|255020124|ref|ZP_05292194.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC
           51756]
 gi|254970417|gb|EET27909.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC
           51756]
          Length = 191

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G+I   +  ++ ++V G+ Y +  P+     L   G   TL     +R+D   L
Sbjct: 1   MIAFLRGHILERHPPWLWLEVNGIGYELEMPLSAFFQLPADGAALTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V G+G +VA+  LS +   +L  ++   + + +  IPG+  + 
Sbjct: 61  YGFRERAERDIFRQLIKVSGIGGKVALACLSGMDVEQLRAALRDGDVRRLTAIPGVGART 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +               AI+AL +LGY    A+ A
Sbjct: 121 AERLIVELRDKL-------------ASGSVGATPVAGDPRQEAIAALQSLGYKATDASQA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               L          ++IR  L+ ++
Sbjct: 168 ----LAGLDPGLSVEELIRQGLKTLA 189


>gi|149927724|ref|ZP_01915976.1| Holliday junction DNA helicase motor protein [Limnobacter sp.
           MED105]
 gi|149823550|gb|EDM82780.1| Holliday junction DNA helicase motor protein [Limnobacter sp.
           MED105]
          Length = 196

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +      ++L+DVQGV Y +  P+ TL  L +I   CTL     +R+D   L
Sbjct: 1   MIGRLKGTLLEKNAPWILLDVQGVGYELQVPMSTLFNLPEINGSCTLLTHLVVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L  V G+G R A+ +LS I+  + + ++  Q +  + +IPGI  K 
Sbjct: 61  YGFQNIAEKNLFKTLIKVSGIGPRTALAILSSISTNDFLLAVQSQETARLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKG+ ++L                 +          + AL  LGY   +A  A
Sbjct: 121 AERLLLELKGQIVALGG--------TANIAEGMPLPIGNQSEIVQALCALGYSDKEAALA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
                K        +  ++LALR +S
Sbjct: 173 ----CKGLPEGTSVTDGLKLALRNLS 194


>gi|322420882|ref|YP_004200105.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18]
 gi|320127269|gb|ADW14829.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18]
          Length = 199

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D+V++DV GV Y ++ P  T   L   G   TL + T +++D I L
Sbjct: 1   MIALLTGKIAYKAPDHVILDVNGVGYHVFIPFSTYYALPAEGGTATLQIHTSVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL  V GVG ++A  +LS     EL ES++  +   ++ IPGI  K 
Sbjct: 61  YGFRTQQEKELFQLLIGVSGVGPKLANSILSNSEPAELAESLVSGDLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L       ++      A          + +SAL+NLGY +     A
Sbjct: 121 AERLVLELKEKIRKLG------IAQPATSAAAAPVRQETREDVLSALINLGYKESVVQKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  K    A    +++ AL+ +
Sbjct: 175 LGEL--KFPEDATVEALLKQALKVL 197


>gi|121535579|ref|ZP_01667386.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans
           Nor1]
 gi|121305819|gb|EAX46754.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans
           Nor1]
          Length = 201

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L  D+ ++DV GV Y ++ P      L   G    LF   H+R+D + L
Sbjct: 1   MIGYLRGTVVHLGVDHCILDVNGVGYRVFVPASGRQRLVA-GAQAALFTYLHVREDALLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F+LL  V G+G + A+ +LS ++      ++  +N  ++ +IPGI  K 
Sbjct: 60  YGFHTQDEYELFLLLMDVSGIGPKAALNILSAVSPEGFRLAVSQKNVSLLTKIPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K         +             S    A  A+ A++ LGY   +    
Sbjct: 120 AERIILELKDKV----GTSGETGGDAGLAATGSASAIDQADEALQAMLALGYSHAEVAPV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V  + ++     ++IRL LR 
Sbjct: 176 LKKVRHEAQS---VEELIRLVLRE 196


>gi|238916873|ref|YP_002930390.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC
           27750]
 gi|259495642|sp|C4Z030|RUVA_EUBE2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|238872233|gb|ACR71943.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC
           27750]
          Length = 207

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +  D ++++  G+ Y IY P      L  +G    ++   ++++D+  L
Sbjct: 1   MISYIKGELAEILPDVIVVEANGIGYNIYVPGSVPGELPSVGSEVKIYTYMNVKEDECSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F +L  V G+G + A+G LS ITA +L  +++  +   I  +PGI  K 
Sbjct: 61  FGFLTRDDLSMFKMLICVNGIGPKAALGALSNITADDLRFAVLADDVAAIKALPGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +I+ ELK K   L  V +  +S        +++ ++     +A+ ALV+LGY    A 
Sbjct: 121 AQKIIIELKDKL-KLDEVFESALSKNKKADNNSNVSNVMMIRNDAVEALVSLGYSSKDAL 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV  V  ++    D   +++ AL+ +
Sbjct: 180 VAVKEV--EDIENKDSETVLKEALKKL 204


>gi|296535992|ref|ZP_06898136.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas
           cervicalis ATCC 49957]
 gi|296263678|gb|EFH10159.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas
           cervicalis ATCC 49957]
          Length = 207

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++  ++   + DV GV Y++ C  RTL+ L       +L +ET +R+D I L
Sbjct: 1   MIGKLTGKLDSQFDGGCIFDVNGVGYLVACSARTLAALPAPPGIGSLLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R W+  L  +QGVG +VA+G+LS ++  +L  ++I  +   I + PG+  K+
Sbjct: 61  YGFADATERDWYRTLTGIQGVGPKVALGLLSTLSPADLARALIAGDKGAINRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ EL+ K  +L +        V    A +        +AISAL NLG+ + +A  A
Sbjct: 121 AARLVAELRDKVGALPTGPGLSAGTVT-IAAQLPPADRAQADAISALTNLGWKRPEAAGA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V +K    A    +IR AL+ ++
Sbjct: 180 VQRVAEKLGEGAGLESLIREALKELA 205


>gi|148263482|ref|YP_001230188.1| Holliday junction DNA helicase RuvA [Geobacter uraniireducens Rf4]
 gi|146396982|gb|ABQ25615.1| Holliday junction DNA helicase subunit RuvA [Geobacter
           uraniireducens Rf4]
          Length = 199

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D++++D+ GV Y +  P  T   L   G   TL + TH+++D I L
Sbjct: 1   MIALLAGKLAHKSPDFIILDIGGVGYRVQIPFSTYYALPDAGGVVTLNIYTHVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL SV GVG ++  G+LS I A  L +++I  +   ++ IPGI  K 
Sbjct: 61  YGFRTMAEKEMFQLLISVSGVGPKLGNGILSNIEAENLSDALIRGDLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   +          + ++            + ISALVNLGY +     A
Sbjct: 121 AERLVLELREKVKKMGPF------SIREDAPPSPGRQDIRDDVISALVNLGYKEAVVQKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++       A    I++ AL+ +
Sbjct: 175 LEAI--DIPADASVESILKQALKKL 197


>gi|53720506|ref|YP_109492.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           K96243]
 gi|53726199|ref|YP_103912.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           23344]
 gi|67642316|ref|ZP_00441074.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse
           4]
 gi|76809765|ref|YP_334777.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710b]
 gi|121600711|ref|YP_991618.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1]
 gi|124384917|ref|YP_001027114.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10229]
 gi|126438536|ref|YP_001060376.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668]
 gi|126450738|ref|YP_001082059.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10247]
 gi|126453529|ref|YP_001067637.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 1106a]
 gi|134280414|ref|ZP_01767125.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305]
 gi|167000504|ref|ZP_02266316.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20]
 gi|167721174|ref|ZP_02404410.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei DM98]
 gi|167740150|ref|ZP_02412924.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 14]
 gi|167817363|ref|ZP_02449043.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 91]
 gi|167825771|ref|ZP_02457242.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 9]
 gi|167895840|ref|ZP_02483242.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 7894]
 gi|167904231|ref|ZP_02491436.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912490|ref|ZP_02499581.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 112]
 gi|167920442|ref|ZP_02507533.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei BCC215]
 gi|217421175|ref|ZP_03452680.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576]
 gi|226198378|ref|ZP_03793947.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813764|ref|YP_002898215.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           MSHR346]
 gi|242317479|ref|ZP_04816495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106b]
 gi|254178754|ref|ZP_04885408.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           10399]
 gi|254180688|ref|ZP_04887286.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1655]
 gi|254191517|ref|ZP_04898020.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194815|ref|ZP_04901245.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13]
 gi|254202624|ref|ZP_04908987.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH]
 gi|254207963|ref|ZP_04914313.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU]
 gi|254260441|ref|ZP_04951495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710a]
 gi|254299226|ref|ZP_04966676.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           406e]
 gi|254355897|ref|ZP_04972175.1| Holliday junction DNA helicase RuvA [Burkholderia mallei
           2002721280]
 gi|81379105|sp|Q63QX6|RUVA_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81604343|sp|Q62HA8|RUVA_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90134634|sp|Q3JNS6|RUVA_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230525|sp|A3MP73|RUVA_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230526|sp|A2S595|RUVA_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230527|sp|A1V065|RUVA_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230528|sp|A3NZ66|RUVA_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230529|sp|A3NDF5|RUVA_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52210920|emb|CAH36908.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243]
 gi|52429622|gb|AAU50215.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           23344]
 gi|76579218|gb|ABA48693.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710b]
 gi|121229521|gb|ABM52039.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1]
 gi|124292937|gb|ABN02206.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10229]
 gi|126218029|gb|ABN81535.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668]
 gi|126227171|gb|ABN90711.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106a]
 gi|126243608|gb|ABO06701.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10247]
 gi|134248421|gb|EBA48504.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305]
 gi|147746871|gb|EDK53948.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH]
 gi|147751857|gb|EDK58924.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU]
 gi|148024872|gb|EDK83050.1| Holliday junction DNA helicase RuvA [Burkholderia mallei
           2002721280]
 gi|157808883|gb|EDO86053.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           406e]
 gi|157939188|gb|EDO94858.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694668|gb|EDP84676.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           10399]
 gi|169651564|gb|EDS84257.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13]
 gi|184211227|gb|EDU08270.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1655]
 gi|217396587|gb|EEC36604.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576]
 gi|225929561|gb|EEH25579.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505707|gb|ACQ98025.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           MSHR346]
 gi|238523444|gb|EEP86882.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse
           4]
 gi|242140718|gb|EES27120.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106b]
 gi|243063559|gb|EES45745.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20]
 gi|254219130|gb|EET08514.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710a]
          Length = 193

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPPERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++ALV LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGPLAGAASPSDHATDILNALVALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|332184195|gb|AEE26449.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida 3523]
          Length = 216

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQISLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---------VNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +    S            +         S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQSSGTKVANLDSQAPQVPTPTVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|223938504|ref|ZP_03630396.1| Holliday junction DNA helicase RuvA [bacterium Ellin514]
 gi|223892766|gb|EEF59235.1| Holliday junction DNA helicase RuvA [bacterium Ellin514]
          Length = 201

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V +DV GV Y +  P+ +   L + G    L     +R+D   L
Sbjct: 1   MINFLHGKLVEALPTQVTVDVNGVGYEVLIPLSSFDKLPQPGGEVKLLTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF++  +R+ F LL  +V G+G ++A+ +LS +  T L  ++   + K ++QI G+  K
Sbjct: 61  YGFMTAGEREMFRLLMNTVTGIGPKLALNILSGMNVTMLRGAVSNGDVKSLSQISGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K  +  +            Q  +        +A+ AL+ LG+ Q +A  
Sbjct: 121 TAERIVVELKDKMGAAGAW------EAASAQRSLSEPDQRVNDAVLALMALGFKQPEAHD 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V S        A    ++R +L+ 
Sbjct: 175 TVRSAQVLLGQQATVEDLVRASLKK 199


>gi|198282210|ref|YP_002218531.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665092|ref|YP_002424575.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|226698723|sp|B5EJL8|RUVA_ACIF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725431|sp|B7J3G2|RUVA_ACIF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|198246731|gb|ACH82324.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517305|gb|ACK77891.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 193

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I      ++ +DVQGV Y +  P+     +   G   T+     +R+D   L
Sbjct: 1   MITSLTGTILQRRPPWLWLDVQGVGYELEMPLSGFYQMPAEGAALTVHTHLTIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL  V G+G +VA+  LS + A  L +++   N+  +  IPGI  K 
Sbjct: 61  YGFMTVAERDMFRLLIRVNGIGGKVALACLSGLPAERLSQAVAEGNTAQLTAIPGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   ++          +  Q            AI+AL+ LGY   QA+ A
Sbjct: 121 AERLVVELRDKMGGIAPGPMGRGGAGDPRQ-----------EAIAALLTLGYKPAQASQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +     +      +IR +L+ +S
Sbjct: 170 IAGLA----DGLGLEDLIRQSLQNLS 191


>gi|258593140|emb|CBE69451.1| Holliday junction DNA helicase ruvA [NC10 bacterium 'Dutch
           sediment']
          Length = 208

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       ++IDV GV Y ++ P+ T   L +I     L + TH+R+D I+L
Sbjct: 1   MIAQLRGLLASKDPGQIVIDVNGVGYQVFVPLSTFYQLPEIQQEVHLRIYTHVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F LL  V G+G R+A  +LS I   E + +++  ++  +  IPG+  K 
Sbjct: 61  YGFHAIEERITFELLTGVSGIGPRLAANILSGIAVEEFIPAVLEGDTARLKAIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +          V  ++           + +SAL+NLG  + +A+ A
Sbjct: 121 AERIILELKDKVTEVPC-----RGRVVVDRQPSPERDRTIEDVVSALLNLGCSRKEASAA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +      +  D   +++ AL+ +S
Sbjct: 176 AEAAHHTVGDGTDFETLVKQALKHLS 201


>gi|88705605|ref|ZP_01103315.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71]
 gi|88700118|gb|EAQ97227.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71]
          Length = 195

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 6/195 (3%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
                  +L+DV GV Y +  P+ TL  L  +G+  TL     +R+D   L+GF+S  DR
Sbjct: 2   LQKQPPEILVDVGGVGYELQVPMTTLFQLPALGEVVTLLTHHAVREDAQTLYGFVSARDR 61

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           + F  L  V GVG ++A+ +LS +       ++   +   +  +PG+  K A R++ E++
Sbjct: 62  ELFRHLIKVNGVGPKLALTILSGMDGERFARAVHDDDLSALVALPGVGKKTAERLLIEMR 121

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
            +          + + +               +A  ALV LGY   +A   V  V     
Sbjct: 122 DRVSGWLEPGPGESANLG----QAGPSSDKLGDAEGALVALGYKPAEAARLVARV--DND 175

Query: 190 NIADDSQIIRLALRA 204
           +I+D  ++IRLALR+
Sbjct: 176 DISDSEELIRLALRS 190


>gi|21243875|ref|NP_643457.1| Holliday junction DNA helicase RuvA [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626863|ref|ZP_06705455.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294665404|ref|ZP_06730692.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|24212375|sp|Q8PHV0|RUVA_XANAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|21109477|gb|AAM37993.1| holliday junction binding protein DNA helicase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|292598877|gb|EFF43022.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292604815|gb|EFF48178.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 194

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 121 AERMVVELRDRAADFSSGAPITGQL----------GPDAVSEATVALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A    +IR AL+A
Sbjct: 171 ARDAGAEGDEVA---TVIRKALQA 191


>gi|256819155|ref|YP_003140434.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM
           7271]
 gi|256580738|gb|ACU91873.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM
           7271]
          Length = 194

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      +V+ID  GV Y +   + T S L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLVEKNSTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA ++  +II  +   I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGDVATIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L             E+  + ++ +    A++AL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDF----------EEVPMNAVSTHKEEALAALEVLGFMRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++K         +II+ AL+ +
Sbjct: 170 VDIIIKSSSEELSVEEIIKQALKRL 194


>gi|56707779|ref|YP_169675.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670250|ref|YP_666807.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis FSC198]
 gi|56604271|emb|CAG45291.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320583|emb|CAL08674.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis FSC198]
          Length = 217

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 2   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 62  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 122 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 181

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 182 YKQKDAEKMARSAM---GDATTVAEVIRKALQ 210


>gi|224456850|ref|ZP_03665323.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370278|ref|ZP_04986283.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874591|ref|ZP_05247301.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|90135024|sp|Q5NH17|RUVA_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151568521|gb|EDN34175.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840590|gb|EET19026.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158951|gb|ADA78342.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 216

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTVAEVIRKALQ 209


>gi|332519991|ref|ZP_08396455.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4]
 gi|332044550|gb|EGI80744.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4]
          Length = 193

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       V+ID  GV Y++   + T S +    +   LF    +++D   L
Sbjct: 1   MITHIKGKMVEKNPTDVVIDCNGVGYLLNISLNTFSQIPD-QESIHLFTHLQVKEDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F LL SV G+G   A  +LS +T  ++ E I   +  +I  I GI  K 
Sbjct: 60  YGFFTKGEREVFRLLISVSGIGTNTARTMLSSLTPKQIREGIATADVALIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  +          ++  +    +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLKDKILKIYDI----------DEVSVNRNNTNKDEALSALEVLGFAKKQAERV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++  +   A    II+LAL+ +
Sbjct: 170 VDKIVVAQPE-ASVEAIIKLALKNL 193


>gi|315224590|ref|ZP_07866416.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           ochracea F0287]
 gi|314945456|gb|EFS97479.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           ochracea F0287]
          Length = 194

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      YV+ID  GV Y +   + T S L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLVEKNPTYVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA ++  +II      I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGEVATIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L             E+  + ++ +    A++AL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDF----------EEVPMNAVSTHKEEALAALEVLGFMRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++K         +II+ AL+ +
Sbjct: 170 VDIIIKSSSEELSVEEIIKQALKRL 194


>gi|290967870|ref|ZP_06559420.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1
           str. 28L]
 gi|290782009|gb|EFD94587.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1
           str. 28L]
          Length = 200

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +  ++ +Y  IDV GV Y IY P  TL+ L       TLF   H+R+D I L
Sbjct: 1   MIGYIRGPVTRIFHEYCFIDVHGVGYRIYAPAATLAALVPE-RETTLFTYMHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   FMLL  V GVG +VA+G+LS +T  E   ++  ++ K + ++PGI  K+
Sbjct: 60  YGFGTQEEYDVFMLLIGVSGVGPKVALGILSAVTPEEFCAAVQRKDLKTLTRMPGIGKKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RI+ EL  K  SL   +         +        S    A+ AL  LGY + +A TA
Sbjct: 120 GDRILFELHDKVASLQGRIPD-----GADNGEDIDSGSHTDEAVEALRGLGYSESEAQTA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V SV  K+ ++ D    IR AL+ +
Sbjct: 175 VASVTGKDLSVEDK---IRRALQVL 196


>gi|146299412|ref|YP_001194003.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae
           UW101]
 gi|57236796|gb|AAW49008.1| RuvA [Flavobacterium johnsoniae UW101]
 gi|146153830|gb|ABQ04684.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae
           UW101]
          Length = 193

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       V+ID  GV Y +   + T S +    DF  L+    +++D   L
Sbjct: 1   MIAHLQGKLVEKNPTEVVIDCGGVGYHVNISLHTFSLIPNA-DFIKLYTHLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F +L SV G+GA +A  +LS I   +++ +I   +  VI  I GI  K 
Sbjct: 60  YGFVEKSEREIFRMLLSVSGIGAGIARTMLSSIEPRQIINAIASGDVGVIQSIKGIGNKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L  +          ++  +    +    A+SAL  LG+ +  +   
Sbjct: 120 AQRVILDLKEKVLKLYDL----------DEVSVVQNNTNRDEALSALEVLGFVRKTSEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++K++   A    II+ AL+++
Sbjct: 170 VEKIVKEDPE-ATVETIIKKALKSL 193


>gi|167837835|ref|ZP_02464718.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis MSMB43]
          Length = 193

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPHTGEKVMLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGPLAGAASPSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|300112852|ref|YP_003759427.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113]
 gi|299538789|gb|ADJ27106.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113]
          Length = 202

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L+DVQGV Y +  P+ T   L  +G    L+    +R D   L
Sbjct: 1   MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F S+ +R  F  L  V GVGA++ +G+LS I A      +   ++  + ++PGI  K 
Sbjct: 61  YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ + +      +  ++ +  +             A+SALV LGY  + A+  
Sbjct: 121 AERLIIEMRDRLL---DRPESRIAEMCSDTVDGSVPAGTVAEAVSALVALGYKPNDASRT 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +   +       +IIR +L+ +
Sbjct: 178 VRRL---DTEGLTTEEIIRRSLQRM 199


>gi|332968271|gb|EGK07345.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella kingae
           ATCC 23330]
          Length = 188

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 12/197 (6%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +       ++IDV GV Y +   ++T   L  +G+   L+    +R+D   LFGF    +
Sbjct: 2   LLEKMPPQIVIDVNGVGYELDVSMQTFYALPALGETVQLYTYLVVREDAHLLFGFGDASE 61

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F  L  V G+GA+ A+G+LS +T  EL ++I  ++ K ++  PGI  K A R++ EL
Sbjct: 62  RTTFRQLIKVSGIGAKTALGILSAMTTDELAQAIANEDVKRLSSAPGIGKKTAERMILEL 121

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188
           +GK               +       +      + +S L+ LGY + +A  A     K  
Sbjct: 122 RGKL--------AHRGLGDLALFTPAADTDNRADVVSTLLALGYSEREAQAA----CKSL 169

Query: 189 KNIADDSQIIRLALRAI 205
            N  +  + +RLAL+ +
Sbjct: 170 PNGVEVGEGVRLALKQL 186


>gi|119896893|ref|YP_932106.1| Holliday junction DNA helicase RuvA [Azoarcus sp. BH72]
 gi|166230515|sp|A1K314|RUVA_AZOSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119669306|emb|CAL93219.1| holliday junction DNA helicase [Azoarcus sp. BH72]
          Length = 199

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y +  P+ T   L   G   +L     +R+D   L
Sbjct: 1   MIGRISGLLLEKNPPQILVDAHGVGYELEVPMSTFYGLPATGTQVSLHTHLAIREDGHFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R  F  L  V G+GAR A+ VLS ++ ++L +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFATDEERTAFRQLLKVSGIGARTALAVLSGLSVSDLAQAVALQEAGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K       V        +  A     P    + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELRDKLGKALPQV-----AGARLAAVAGGAPDAKSDILNALLALGYNEKEALGA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               +K        S  IR AL+ +S
Sbjct: 176 ----MKGLAEDTGVSDGIRQALKLLS 197


>gi|110636455|ref|YP_676662.1| Holliday junction DNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354887|sp|Q11Z44|RUVA_CYTH3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110279136|gb|ABG57322.1| Holliday junction DNA helicase subunit RuvA [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 199

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +      +V++DVQG+ Y I   + T S L  + +   +    H+++D   L
Sbjct: 1   MIAYIEGKLAHKDPTFVVVDVQGIGYHIRVSLHTFSQLKDL-ERVKIHTFLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++++ F+ L S+ G+G   A+ VLS +   EL E+I  ++ K I  + GI +K 
Sbjct: 60  FGFADLMEKEMFLHLTSISGIGPGTALVVLSSMNPIELKEAIAREDVKTIQSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K    + +   D      +Q    S  S    A++AL+ LG+ +  A   
Sbjct: 120 AQRVILELKDKMKKDALLAGSD-----SKQNFSVSHNSIRSEALTALITLGFTKTVAEKN 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  +LK   N      +I+ AL+
Sbjct: 175 LDLILKGNSNSFTLEDLIKQALK 197


>gi|225011142|ref|ZP_03701604.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-3C]
 gi|225004704|gb|EEG42664.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-3C]
          Length = 193

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       ++++  GV Y+++  + T S L    +  +++    +++D   L
Sbjct: 1   MITHLRGKLVEKNPTEIVVECGGVGYLVHISLHTYSLLPSE-EAVSIYTHLQVKEDSHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F LL SV G+GA  A  +LS ++  EL ++I   N   I  + GI +K 
Sbjct: 60  YGFMEVSERAIFRLLISVSGIGANTARTMLSSLSPEELRDAIAASNVGTIQSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + +  +          E+       +    A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIIELKDKILKIYDL----------EELSTPLDNTNKEEALSALEVLGFARKQSEKM 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK   ++     II+  L+ +
Sbjct: 170 VEKILKASPSL-SVEDIIKQTLKGL 193


>gi|269468816|gb|EEZ80420.1| Holliday junction resolvasome, DNA-binding subunit [uncultured
           SUP05 cluster bacterium]
          Length = 195

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L++V G+ Y I CP+ +   +G   +  +L    H+++D   L
Sbjct: 1   MIGQLTGKILEKNPPEILLEVGGIGYEILCPMSSFYEMGS-NENISLHTHFHVKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  ++  F  L  V G+G +VA+ +LS +    L+ ++  ++  ++A+ PGI  K 
Sbjct: 60  YGFISKDEKILFRELIRVNGIGPKVALAILSHLNVASLMNAVANEDDALLAKTPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +   L      ++S    +     +     I A  AL  LG+   +A   
Sbjct: 120 AQKLIVELKDRLEKL------ELSSSAHQIITASNSNPNTIKASQALQALGFKTKEADRM 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + ++     +     ++IR AL+
Sbjct: 174 LNAI---NDDSLSIEELIRKALQ 193


>gi|241668355|ref|ZP_04755933.1| Holliday junction DNA helicase RuvA [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876888|ref|ZP_05249598.1| holliday junction DNA helicase ruvA [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842909|gb|EET21323.1| holliday junction DNA helicase ruvA [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 217

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG+I    +L+    +R+D  +L
Sbjct: 1   MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQISLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + +D++ F  L  V G+GAR A+ +LS + +T L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV---------QQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +           + + V   Q       S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYSQSSSTSASVNANSVQHTQTPAAISNSIFSESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A   +   +         ++ IR AL+
Sbjct: 181 YKQKDAEKMIRGTI---GESTTAAEAIRKALQ 209


>gi|83647602|ref|YP_436037.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396]
 gi|123739873|sp|Q2SCL2|RUVA_HAHCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83635645|gb|ABC31612.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396]
          Length = 204

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +  +VL+DV GV Y +  P+  L  L K+G+ C+LF    +R+D   L
Sbjct: 1   MIGRLVGKLAENHPPFVLLDVNGVGYEVEVPLSALGYLPKLGESCSLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR+ F LL  V GVG ++A+ +LS ++  E VE +   N   + ++PG+  K 
Sbjct: 61  YGFIRREDRELFRLLLKVNGVGPKMAVAILSHMSPNEFVECVRGDNLTRLTKMPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +     +  ++  +     QA           A    + LGY   +A+ A
Sbjct: 121 AERLLIEMRDRIKDWGAGDRETATPELLSQAVGGHSHLEEAEAAL--LALGYKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V    K+     ++IRLAL+ +
Sbjct: 179 INAV---NKDGMGRDELIRLALKGM 200


>gi|330991872|ref|ZP_08315821.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter sp. SXCC-1]
 gi|329760893|gb|EGG77388.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter sp. SXCC-1]
          Length = 207

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 114/206 (55%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +  +  D  +IDV GV Y++    RTL+ L +  +   + VET +R+D I L
Sbjct: 1   MIAQLRGLLAQVEADRCVIDVGGVGYLVQASSRTLAVLPQPPELALVLVETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R WF LL +VQGVGA+VA+ +LS +   EL+ +I   +  ++ +  G+  ++
Sbjct: 61  YGFAEASERAWFRLLTTVQGVGAKVALAILSVLPPPELMMAIGSGDKTMLTRAGGVGARL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ K   + + +      V        +  S A +A+ AL  LG+ + +A   
Sbjct: 121 AQRIVTELRDKCEGMPTGMVATGGGVPGVTITRPTAHSVAADAVLALSGLGFRRGEAQPV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+++ +   D   +IR AL+ ++
Sbjct: 181 VERVIERHEGQVDLDIVIRDALKELA 206


>gi|167564063|ref|ZP_02356979.1| Holliday junction DNA helicase motor protein [Burkholderia
           oklahomensis EO147]
 gi|167571207|ref|ZP_02364081.1| Holliday junction DNA helicase motor protein [Burkholderia
           oklahomensis C6786]
          Length = 193

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L    +   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTSEKVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++ALV LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGPLAGAASPSDHATDILNALVALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|160871606|ref|ZP_02061738.1| holliday junction DNA helicase RuvA [Rickettsiella grylli]
 gi|159120405|gb|EDP45743.1| holliday junction DNA helicase RuvA [Rickettsiella grylli]
          Length = 199

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 9/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI +++G +       +L++V     Y I   + T   L   G+   L+ +  +R+D   
Sbjct: 1   MINRLRGILVEKQPPILLVEVANAFTYEIQASMHTFYQLPHCGEKVFLYTQFIVREDGHF 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F  L  V GVG +VA+G+LS+I  TE V  +  QN   +  +PGI  K
Sbjct: 61  LYGFSTPEERFLFTQLLKVSGVGPKVALGILSKIEVTEFVSCVEQQNVNSLQAVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++ +  +LS    + +     ++  I S+     +AI+AL+ LGY   +A+ 
Sbjct: 121 TAERLIIEMRDRLRNLSHNQPEIL-----DKNTIQSLKHIQQDAIAALMALGYKNQEASR 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV+ +     ++     +IR AL  I+
Sbjct: 176 AVLRIKDASLSL---EALIRHALNTIN 199


>gi|149196353|ref|ZP_01873408.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa
           HTCC2155]
 gi|149140614|gb|EDM29012.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa
           HTCC2155]
          Length = 206

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  L     +IDV GV Y +  P+ T   L K+G    L +   +R+D + L
Sbjct: 1   MIAHLKGQLVELELSNAVIDVGGVGYYVDIPMSTYDRLPKVGSPVALRIHMTVREDAMNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R +F ++ SV G+G ++A+  LS +      E+I   N K++++I G+  ++
Sbjct: 61  YGFATDEERSFFRMITSVSGIGPKIALAALSALPTETFCEAIQEGNIKLLSKISGVGKRM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +L           + + +          ++I AL  LGY  D     
Sbjct: 121 AERMVVELRDKVGALGMTSAFVAKVADDDMS--AQDKEAFNDSIMALEALGYRPDTIRKT 178

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207
           V ++             II+ AL A++ 
Sbjct: 179 VKTIFDGLSPAQRSSENIIKAALSAMNS 206


>gi|319786205|ref|YP_004145680.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464717|gb|ADV26449.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis
           11-1]
          Length = 196

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L ++G   +LF     ++D + L
Sbjct: 1   MIGRLRGTLVLKQPPWLVVDVNGVGYELEAPMSTFYDLPELGREVSLFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    +   +   + +IPGI  K 
Sbjct: 61  YGFLRESERRLFRDVQKVSGIGAKIALAVLSGVSVDEFARLVQAGDVTALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A         D++          +      +A +AL  LGY    A   
Sbjct: 121 AERMVVELRDRA--------ADLAGGGAVAGMTAAPGDPMADAATALQQLGYKPADAQRM 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                       + + IIR AL++
Sbjct: 173 ---ARDAAAPGDEAAAIIRKALQS 193


>gi|302879788|ref|YP_003848352.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans
           ES-2]
 gi|302582577|gb|ADL56588.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans
           ES-2]
          Length = 193

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DVQGV Y +  P+ T   L  + +   L  +  +R+D   L
Sbjct: 1   MIGRLSGILLEKTPPQILLDVQGVGYELEVPMSTFYNLPPLHEKVVLHTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVG ++A+ VLS ++  +L +++  + +  + +IPG+  K 
Sbjct: 61  YGFGSTDERIAFRQLLKISGVGPKLALSVLSGLSLNDLADAVANKEAGRLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK   +   +           AH   + S + + ++AL  LGY   +A  A
Sbjct: 121 AERLLLELEGKFTVMGVAM-----------AHGVPVTSASGDIVNALQALGYNDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
                K+       S  IR AL+ +S
Sbjct: 170 ----AKQLPKDVSVSDGIRQALKFLS 191


>gi|94971750|ref|YP_593798.1| Holliday junction DNA helicase RuvA [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553800|gb|ABF43724.1| Holliday junction DNA helicase subunit RuvA [Candidatus Koribacter
           versatilis Ellin345]
          Length = 202

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 14/205 (6%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G I     + V++D  GV Y +   + T S LG  G   +L+V TH+R+D + L+
Sbjct: 11  IAHLRGKILAKRPNQVIVDCGGVGYDVTISVPTFSELGADGTEASLYVHTHVREDALALY 70

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF+   ++Q F  L +V G+G ++A+ VLS + A E+V +I   +   + +IPG+  K A
Sbjct: 71  GFVHPQEKQLFERLLTVSGIGPKLAITVLS-MAANEVVGAIRGNDVTRLTKIPGVGKKTA 129

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK K  +  +  +            I        + ISALVNLGY +  A  AV
Sbjct: 130 ERMILELKDKLETFGATPE------------IPKASQAEEDVISALVNLGYQRAAAEQAV 177

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
              LK   + A D Q+ R AL  +S
Sbjct: 178 TRALKTGSSSAFD-QLFRGALGMLS 201


>gi|71909671|ref|YP_287258.1| Holliday junction DNA helicase motor protein [Dechloromonas
           aromatica RCB]
 gi|90134857|sp|Q478E3|RUVA_DECAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71849292|gb|AAZ48788.1| Holliday junction DNA helicase subunit RuvA [Dechloromonas
           aromatica RCB]
          Length = 192

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DV GV Y +  P+ T   L   G+   L     +R+D   L
Sbjct: 1   MIGRLTGILAEKNPPQIVLDVNGVGYELDVPMSTFYNLPAAGEKTKLLTHFAVREDGHYL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F  L  V G+GAR A+ VLS ++  +L  ++  Q    + +IPGI  K 
Sbjct: 61  YGFLTEAERFAFRQLLKVSGIGARTALSVLSGLSVGDLAAAVAQQELGRLIKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK    + V            +   ++     +  +AL+ LGY + +A +A
Sbjct: 121 AERLLLELKGKLADATGV------------SLHPAVDDSKQDISNALLALGYNEKEAASA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               +K+       S  IR AL+ +S
Sbjct: 169 ----MKQLPADVSTSDGIRAALKLLS 190


>gi|332527517|ref|ZP_08403569.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus
           JA2]
 gi|332111924|gb|EGJ11902.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus
           JA2]
          Length = 192

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ T   L  +G+   L  E  +R+D  +L
Sbjct: 1   MIGRLSGTLAEKTPPQLLVDVGGVGYEVDVPMSTFYHLPALGERVVLLTEFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R  F LL  + GVG R+A+ +LS ++  EL +++  Q+   + ++PGI  K 
Sbjct: 61  FGFLTASERATFRLLVKISGVGPRMALALLSGLSVAELSQAVAAQDGARLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK      +        +                + AL+ LGY + +A  A
Sbjct: 121 AERVLLELKGKLAPDLGLPSAAGGAGDAHAD-----------IVQALMALGYNEREAQAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
                K        S+ I++AL+A++
Sbjct: 170 ----AKALPKDVGVSEGIKVALKALN 191


>gi|312797266|ref|YP_004030188.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI
           454]
 gi|312169041|emb|CBW76044.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI
           454]
          Length = 193

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   GD  TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPGTGDKITLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +RQ F  L  + G+GAR+A+ VLS ++ ++L +++  Q++  + ++PGI  K 
Sbjct: 61  YGFLTQQERQTFRELLKISGIGARMALAVLSGMSVSDLAQTVTQQDTARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + + AL++LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADIGAAASAASSSDHAPDILHALLSLGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S  I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191


>gi|84623202|ref|YP_450574.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|161899002|ref|YP_200300.2| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188577435|ref|YP_001914364.1| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|90146231|sp|Q5H2A6|RUVA_XANOR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123725563|sp|Q2P577|RUVA_XANOM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560139|sp|B2STK2|RUVA_XANOP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84367142|dbj|BAE68300.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|188521887|gb|ACD59832.1| holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 194

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 121 AERMVVELRDRAADFSSGAPITGQLG----------PDAISEATVALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A    +IR AL+A
Sbjct: 171 ARDAGAEGGEVA---TVIRKALQA 191


>gi|293603639|ref|ZP_06686060.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter
           piechaudii ATCC 43553]
 gi|292818075|gb|EFF77135.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter
           piechaudii ATCC 43553]
          Length = 190

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       + +DV G+ Y I   + TL  L + G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTICVDVGGLGYDIDVSMTTLYSLPETGARVTLYTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++  +L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFGTAGERSAFRELIKVSGIGARTALSVLSGMSVADLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   + P    + ++AL+ LGY + ++ +A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGAASHATPDHQSDILNALLALGYSEKESLSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK        S  I+ AL+A++
Sbjct: 168 ----LKGLPEGVGVSDGIKQALKALA 189


>gi|257095744|ref|YP_003169385.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048268|gb|ACV37456.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 191

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       V++DV G+ Y +  P+ T   L   G+  +L     +R+D   L
Sbjct: 1   MIGRLSGILLEKNPPQVVLDVHGIGYELDVPMSTFYNLPANGEQVSLLTHFVVREDGQFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +R  F  L  + GVGAR+A+ VLS ++ ++L + +  Q    + ++PGI  K 
Sbjct: 61  YGFASEPERFAFRQLLKISGVGARLALSVLSGLSVSDLAQVVARQEVGRLTKVPGIGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +   A I        + ++AL+ LGY   +A  A
Sbjct: 121 AERLLLELKGKL-------------ADALPASIAPADGARSDILNALLALGYNDREAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               +K   +    S  IR AL+ +S
Sbjct: 168 ----MKLLPDETTTSDGIRQALKLLS 189


>gi|15966503|ref|NP_386856.1| Holliday junction DNA helicase motor protein [Sinorhizobium
           meliloti 1021]
 gi|307300460|ref|ZP_07580240.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C]
 gi|307318325|ref|ZP_07597760.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83]
 gi|20455253|sp|Q92M91|RUVA_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15075774|emb|CAC47329.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti
           1021]
 gi|306896007|gb|EFN26758.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83]
 gi|306904626|gb|EFN35210.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C]
          Length = 205

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 138/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+V++DV GV Y+ +C  RTL  LG  G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLGKLGSAGEAAVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T  EL  +I LQ+   I++ PG+  K+
Sbjct: 61  FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + S  +   +    K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AVRIVTELKNKAPAFSGEMAPSIGL--KQELGEGVAAAPVADAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL L+ +S
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204


>gi|134302038|ref|YP_001122007.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166230553|sp|A4IY85|RUVA_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134049815|gb|ABO46886.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 216

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFIVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|227529693|ref|ZP_03959742.1| crossover junction endoribonuclease subunit A [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350359|gb|EEJ40650.1| crossover junction endoribonuclease subunit A [Lactobacillus
           vaginalis ATCC 49540]
          Length = 200

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++V G+ Y +         + K     T++V   +R D I L
Sbjct: 1   MYEYLTGLVTVVEPRYIVVEVNGIGYRLLVANPYRYHIDKR-QKVTVYVYQAVRDDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + ++Q FM L +V G+G + A+ +L+      L+ +I   + K + + PGI  K 
Sbjct: 60  FGFSDEDEKQLFMQLINVSGIGPKSALAILANPDHEGLINAIANNDVKYLTRFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I  +LK K   L+      +  +  E  ++        +A+ AL  LGY + +    
Sbjct: 120 ASQICLDLKDKIERLAPSESNLLKPLLPENENV---NDALQDALEALTALGYKEREVKR- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +   L+KE       + +R ALR ++
Sbjct: 176 IKKELEKEGE-TSTEEYLRHALRLLN 200


>gi|311031507|ref|ZP_07709597.1| Holliday junction DNA helicase RuvA [Bacillus sp. m3-13]
          Length = 203

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E +  +YV+++V GV Y +  P   +  + +     T++   H+R+D + L
Sbjct: 1   MIDFIRGFVEYVSPEYVVVEVMGVGYQVNAPNPFIYQVDR-DKEVTIYTYQHVREDILAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D+  FM L +V G+G + A+ +L+     ++V +I  ++ K + + PG+  K 
Sbjct: 60  YGFKTREDKNLFMKLLNVTGIGPKGALAILASGQPAQVVHAIENEDEKFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L      D+   + E +   +  S    A+ AL  LGYG+ +    
Sbjct: 120 ARQIILDLKGKLNDLVPSAFPDLFQPDVEVSVPGASSSALEEALEALKVLGYGEREIKKI 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ K++       Q ++ AL+ +
Sbjct: 180 VPALQKED---LSTDQYVKRALQLL 201


>gi|238019731|ref|ZP_04600157.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748]
 gi|237863772|gb|EEP65062.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748]
          Length = 202

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 112/205 (54%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +   Q    +    A  AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKLAKMTHISAESPAAI---QPIGVAASGAAGEAIEALVSLGYSERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+   +    D S++I+++L  +
Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198


>gi|208779418|ref|ZP_03246764.1| holliday junction DNA helicase RuvA [Francisella novicida FTG]
 gi|254372980|ref|ZP_04988469.1| hypothetical protein FTCG_00553 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570707|gb|EDN36361.1| hypothetical protein FTCG_00553 [Francisella novicida GA99-3549]
 gi|208745218|gb|EDZ91516.1| holliday junction DNA helicase RuvA [Francisella novicida FTG]
 gi|332678321|gb|AEE87450.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida Fx1]
          Length = 216

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +         S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|85858586|ref|YP_460788.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB]
 gi|123725225|sp|Q2LRA9|RUVA_SYNAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85721677|gb|ABC76620.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB]
          Length = 204

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +       V+ID  G+ Y +  P+ T   L  +G   +LFV T  +QD I L
Sbjct: 1   MIAQIRGKLILKTVSMVIIDNHGIGYEVMIPLSTYYELPDVGSEVSLFVYTFFKQDSILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF ++ ++Q F L+ SV G+G R+A+ VLS I ++EL+ +I   +   + ++PG+  K+
Sbjct: 61  VGFCTENEKQLFKLMISVSGIGPRLAVNVLSGINSSELIHAIANNDLNRLLKVPGLGRKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K    +S  Q         +           +AISAL+NLGY    A  A
Sbjct: 121 AQRVILELRDKVSGWTSKEQITF---INNKKDAIDQSVMEEDAISALINLGYKSQAAKDA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V+ +         I++ AL+ ++
Sbjct: 178 IDRVISEGGENKSLDVILKKALKVLA 203


>gi|189462206|ref|ZP_03010991.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136]
 gi|189431109|gb|EDV00094.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136]
          Length = 198

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +     +I+  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGELTEITPAMAVIECNGLGYGINVSLNTYSAI-QGKKEVKLYIYESIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS +T +EL   I   N K++  + GI +K 
Sbjct: 60  YGFATKQERELFLLLISVSGIGGNTARMILSALTPSELCNVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +         + ++     I +       AI+AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKISTTDIGTSTTSAPIS-----ITANNEIYEEAIAALTMLGFAQAPSQKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK+E + A   ++I+LAL+ +
Sbjct: 175 VAAILKEEPDAA-VEKVIKLALKRL 198


>gi|78048836|ref|YP_365011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325929365|ref|ZP_08190495.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans
           91-118]
 gi|90146217|sp|Q3BQF2|RUVA_XANC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78037266|emb|CAJ25011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325540277|gb|EGD11889.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans
           91-118]
          Length = 194

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 121 AERMVVELRDRAADFSSGAPITGQLG----------PDAVSEATVALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A    +IR AL+A
Sbjct: 171 ARDAGAEGDEVA---TVIRKALQA 191


>gi|313894615|ref|ZP_07828178.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313440805|gb|EFR59234.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 202

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +   Q    +       AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKLAKMTHISTESSAVI---QPIGVTASGATGEAIEALVSLGYSERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+   +    D S++I+++L  +
Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198


>gi|332977850|gb|EGK14603.1| crossover junction ATP-dependent DNA helicase RuvA [Desmospora sp.
           8437]
          Length = 204

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +     + ++++  GV Y+I+C   T     + G+  T++    +R+D   L
Sbjct: 1   MIEFIRGTVAYRATEAIVVETGGVGYLIFC---THPLEWEEGEEVTVYTHQVIREDAHTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LL  V G+G +VA+ V        LV ++  ++ + + ++PG+  K 
Sbjct: 58  YGFRERQVRDLFRLLLEVSGIGPKVALAVTGSGDPGRLVNAVEQEDLRFLTKLPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K                     +    S    AI AL  LGY +++AT A
Sbjct: 118 AQRIVLDLKDKLKKAGFSESTFSDVPVGISGEVARAGS--AEAIEALQALGYNEEEATRA 175

Query: 181 VVSVLKK-EKNIADDSQIIRLALR 203
           V    K   +   +  Q IR AL+
Sbjct: 176 VAMARKDFGEEEPELDQWIRRALQ 199


>gi|319406256|emb|CBI79893.1| holliday junction DNA helicase RuvA [Bartonella sp. AR 15-3]
          Length = 214

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/208 (38%), Positives = 136/208 (65%), Gaps = 2/208 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++ +EL ++I L ++ +I++ PG+  K+
Sbjct: 61  FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVSELSQAITLNDTAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK K + LS    ++ +  +              +A+ AL+ LG+  D+ATTA
Sbjct: 121 SERIVSELKSKTL-LSKEDNKNPALSSSLNFSSEEKHQPTHDALLALIKLGFDHDKATTA 179

Query: 181 VVSVLKKEK-NIADDSQIIRLALRAISC 207
           + S L   K  +   + ++R +LR +S 
Sbjct: 180 LASALSALKGEMISSALLVRHSLRLLSS 207


>gi|323702066|ref|ZP_08113734.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532948|gb|EGB22819.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans
           DSM 574]
          Length = 199

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +   +V++DV G+ Y +Y P  T   L   G     +    +R+D I++
Sbjct: 1   MIAYIKGKLAYIGAGWVVVDVNGIGYRLYIPAMT--KLPSTGQEVQFYTHMAVREDGIQI 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + + + F+ L  V GVG +VA+ V++ +        I   N   + ++PG+  K 
Sbjct: 59  YGFLQEEELECFLALLDVAGVGPKVALAVVAHLPPGVFKGIIASGNVNQLVKVPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM ELK K    +++ +         +    +      +A+ AL++LGY Q++A  A
Sbjct: 119 AQRIMLELKDKLRGPAALPE-------PSETITPAPGRIEDDAVVALLSLGYAQNEAREA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   +       D S +I+ AL+ ++
Sbjct: 172 VRQAM-GLGLTGDVSALIKAALKELA 196


>gi|311104199|ref|YP_003977052.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8]
 gi|310758888|gb|ADP14337.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8]
          Length = 190

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       + +DV G+ Y I  P+ TL  L   G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTICVDVGGLGYDIDVPMSTLYSLPDTGARVTLYTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++  +L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFASAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   + P    + ++AL+ LGY + ++ +A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGASPHAAPDNQSDILNALLALGYSEKESLSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK        S  I+ AL+A+
Sbjct: 168 ----LKTLPEGVGVSDGIKQALKAL 188


>gi|254473163|ref|ZP_05086561.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062]
 gi|211957884|gb|EEA93086.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062]
          Length = 204

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   +D+VL+DVQGVCY ++CP R L  L ++G+   L +ET +R+D I+L
Sbjct: 1   MIGKLKGVVDSYGDDFVLLDVQGVCYQVHCPSRVLQQLPRVGEAAVLAIETMVREDMIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R+WF +L +VQGVGA+VA+G+L  + A+E+  +I L +   I + PG+  ++
Sbjct: 61  FGFAEDSEREWFRILMTVQGVGAKVALGILGIMKASEVANAIALGDKTAITRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +SV    ++       ++ S P    +A+SAL NLGY   QA+ A
Sbjct: 121 AERIVTELKDKAPAFASVEDDTIAVSQSVAENVASRP--VADAVSALSNLGYQPAQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     A   ++IRL L+ ++
Sbjct: 179 VAAAVKTAGEDASAEKLIRLGLKELA 204


>gi|89256283|ref|YP_513645.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314735|ref|YP_763458.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502349|ref|YP_001428414.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167011087|ref|ZP_02276018.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367618|ref|ZP_04983639.1| holliday junction DNA helicase subunit A [Francisella tularensis
           subsp. holarctica 257]
 gi|254369266|ref|ZP_04985278.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953118|ref|ZP_06557739.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313646|ref|ZP_06804230.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325244|sp|Q0BM63|RUVA_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123094517|sp|Q2A3Q7|RUVA_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230551|sp|A7NBV5|RUVA_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89144114|emb|CAJ79371.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129634|gb|ABI82821.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253429|gb|EBA52523.1| holliday junction DNA helicase subunit A [Francisella tularensis
           subsp. holarctica 257]
 gi|156252952|gb|ABU61458.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122216|gb|EDO66356.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 216

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|301060127|ref|ZP_07200994.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2]
 gi|300445639|gb|EFK09537.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2]
          Length = 200

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       +++ V GV Y ++ P+ T   L +      L + TH+R+D + L
Sbjct: 1   MISYLSGTLFEKSTQSIIVQVGGVGYEVFVPLSTFYTLPEKDGPVNLHIHTHVREDALIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L++  F++L SV G+G +++  +LS + A EL+ +I   ++  +  IPGI  K 
Sbjct: 61  FGFSTKLEKSLFLMLVSVSGIGPKLSANILSGMGAEELLRAIAAGDAPRLQAIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK +A + S   Q   S  ++             + +SAL+NLGY    A  A
Sbjct: 121 AERIALELKDRAAAFSEDAQMPPSVTSE-----TGTEKAMEDTLSALINLGYSAKMARAA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +     + K+      +I+ +L+ ++
Sbjct: 176 MEKAKMRVKD-KTLEGLIKESLKILA 200


>gi|51892298|ref|YP_074989.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum
           IAM 14863]
 gi|81389173|sp|Q67Q98|RUVA_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|51855987|dbj|BAD40145.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum
           IAM 14863]
          Length = 205

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+V+IDV GV Y    P  T S L   G    L+    +R+D + L
Sbjct: 1   MIAHLRGELVTAGADWVVIDVAGVGYRCLVPASTRSRLPAQGAAVQLYTYLQVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL  V GVG +VA+ VLS         ++  ++   I ++PGI  K 
Sbjct: 61  YGFLTQAEYDLFELLLRVDGVGPKVALAVLSTTDPAAFRRAVAFEDLDAICRVPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  ++ +         +     +         A  AL+ LGY + +A  A
Sbjct: 121 AQRLVLELKDKIGAVPAGG---GGVPDGLPVAVAPAGDAWAEASEALIALGYSRGEAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +         ++RLAL+ +
Sbjct: 178 LARVRAEAGEAPSVETLVRLALKQL 202


>gi|126663097|ref|ZP_01734095.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38]
 gi|126624755|gb|EAZ95445.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38]
          Length = 193

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +       V+ID  GV Y I   + T S L    +   LF    +++D   L
Sbjct: 1   MIAHIQGRLVEKTPTEVIIDCNGVGYHINISLHTYSLLPDS-ESLKLFTFLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F LL SV GVGA +A  +LS +  ++++++I   +   +  + GI  K 
Sbjct: 60  YGFVEKQERELFKLLISVSGVGASIARTMLSSLAPSQIIQAIASNDIGTMQSMKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K + +           N ++  +    +    A+SAL  LG+ +  A   
Sbjct: 120 AQRIILDLKEKVLKVY----------NLDEVSVIESNTNKDEALSALEVLGFARKAAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++++  N A    +I+ AL+ +
Sbjct: 170 IDKIIRETPN-ATVENLIKQALKNL 193


>gi|317402225|gb|EFV82814.1| Holliday junction DNA helicase [Achromobacter xylosoxidans C54]
          Length = 190

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV G+ Y I  P+ TL  L + G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTVCVDVNGLGYDIDVPMSTLYSLPETGARVTLYTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++  +L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFATAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   ++     + ++AL+ LGY + ++ +A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATAHAVHDNQSDILNALLALGYSEKESLSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK        S  I+ AL+A+
Sbjct: 168 ----LKTLPEGVGVSDGIKQALKAL 188


>gi|326799497|ref|YP_004317316.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium
           sp. 21]
 gi|326550261|gb|ADZ78646.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium
           sp. 21]
          Length = 194

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +      YV++DV GV Y +   + T   +    + C L+V   +++D   L
Sbjct: 1   MYEYLNGKLAYKCPTYVVLDVNGVGYHVNISLYTFGKIKDC-EQCKLYVSFQVKEDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F  L SV G+GA     +LS IT TE+  +I+  + K I +I GI  K 
Sbjct: 60  YGFAEEGERRLFNHLLSVSGIGASTGRMILSSITPTEIQTAIVQGDVKQIQRIKGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K     +               +    S    A++ALV LG+ + QA   
Sbjct: 120 AQRIILELQDKLKKEGA----------DTLISVPQHQSVPEEALTALVMLGFNKAQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K         ++I+ ALR +
Sbjct: 170 LTEIQKNNAAQFTVEELIKEALRRL 194


>gi|110801789|ref|YP_699225.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101]
 gi|122956588|sp|Q0SRN2|RUVA_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110682290|gb|ABG85660.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101]
          Length = 201

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+GD   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYRIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K 
Sbjct: 61  YGFTTKEELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        +++            S        +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKPDELTSEEEQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDK----TLSIENMIKESLKLL 199


>gi|187735908|ref|YP_001878020.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425960|gb|ACD05239.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 220

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   Y   +++DV GV Y +  P+ T   L    G   TL    H+R++   
Sbjct: 24  MIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDRLNPLPGRELTLKTYLHVRENMQV 83

Query: 60  LFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           L+GF +D +R  F+LL   V G+G   A+ +L  ++  +  ++++  +   IA+  G+  
Sbjct: 84  LYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSVEQFKQAVVGGDVSGIARAKGVGK 143

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A RI+ ELK K    ++   Q     ++             +A  AL+ LG+ Q ++ 
Sbjct: 144 KTAERIVLELKDKVGLAATWEAQAQGATSQAAG----------DAELALIALGFKQVESR 193

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+ + LK   + AD  ++IR ALR+++
Sbjct: 194 KAIAAHLKDHPD-ADVDELIRAALRSMN 220


>gi|226311452|ref|YP_002771346.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
 gi|254766947|sp|C0ZAN3|RUVA_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226094400|dbj|BAH42842.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
          Length = 205

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  +Y++I+  G+ Y ++CP      +   G+   LF   H+R+D I L
Sbjct: 1   MIDFVEGTLSYLDSEYIVIETGGIGYRLFCP-NPYQFVRYEGNKTKLFTHHHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+  T  +LV ++  +N   + + PGI  K 
Sbjct: 60  YGFATRDERDLFRKLLDVSGIGPKGGLAILAAATPEQLVMAVQQENVTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K +  +      ++    +        S    A+ AL  LGY   +    
Sbjct: 120 AQRIILDLKDKLVGYTP--SAILTVAAGDLTAGEQAVSALNEALDALTALGYSDGELQKI 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++ +K K      ++I+  L  +
Sbjct: 178 RNTLSEKSKEGDGVEKLIKQGLALL 202


>gi|187931869|ref|YP_001891854.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229560033|sp|B2SH67|RUVA_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187712778|gb|ACD31075.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 216

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVIEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|83719212|ref|YP_441795.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
 gi|167580615|ref|ZP_02373489.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis TXDOH]
 gi|167618721|ref|ZP_02387352.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis Bt4]
 gi|257137961|ref|ZP_05586223.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
 gi|123753836|sp|Q2SZ54|RUVA_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83653037|gb|ABC37100.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
          Length = 193

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPRILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGPLAGAASPSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|182624414|ref|ZP_02952198.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str.
           JGS1721]
 gi|177910417|gb|EDT72794.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str.
           JGS1721]
          Length = 201

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+G+   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K 
Sbjct: 61  YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       +  +   + +               +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKP--DELTSEEGQLIEGINDNSDYSFNINETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDK----TLSIENMIKESLKLL 199


>gi|282850099|ref|ZP_06259481.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC
           17745]
 gi|282580288|gb|EFB85689.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC
           17745]
          Length = 202

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 112/205 (54%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      +II    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +   Q    +    A  AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKIAKMTHISSESSATI---QPIGVAANGVAGEAIEALVSLGYLERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+   +    D S++I+++L  +
Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198


>gi|18310930|ref|NP_562864.1| Holliday junction DNA helicase motor protein [Clostridium
           perfringens str. 13]
 gi|168208649|ref|ZP_02634274.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214131|ref|ZP_02639756.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE
           str. F4969]
 gi|168215574|ref|ZP_02641199.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC
           8239]
 gi|169343575|ref|ZP_02864574.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str.
           JGS1495]
 gi|20455244|sp|Q8XJ13|RUVA_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|18145612|dbj|BAB81654.1| holliday junction DNA helicase [Clostridium perfringens str. 13]
 gi|169298135|gb|EDS80225.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str.
           JGS1495]
 gi|170713198|gb|EDT25380.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714360|gb|EDT26542.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE
           str. F4969]
 gi|182381996|gb|EDT79475.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC
           8239]
          Length = 201

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+GD   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K 
Sbjct: 61  YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       +  +   + +               +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKP--DELTSEEGQLIEGINDNSDYSFNINETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDK----TLSIENMIKESLKLL 199


>gi|218133570|ref|ZP_03462374.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990945|gb|EEC56951.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC
           43243]
          Length = 203

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  IKG +  + E  ++++   G+   I  P   +  +   G    +    ++++D + 
Sbjct: 1   MISYIKGELTEVSETSIVVETSSGIGMNIIVPQTVIDKMPSCGSMVKIHTYLNVKEDSMT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF++  D   F LL +V G+G + A+ +LS IT  +L  +++  + K I++ PGI  K
Sbjct: 61  LYGFINREDVDIFRLLITVNGIGPKGALAILSTITPDDLRFAVLSDDVKAISRAPGIGAK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K      + +     ++ E+           + + ALV LGYG+ +A  
Sbjct: 121 TAQRMIIELKDKLK----LEEAFEIRLSHEEVDDLPAGDARNDTVQALVALGYGRSEAAR 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V     +  D  Q+I+ AL+ ++
Sbjct: 177 AVNMV--DGADSMDSEQLIKAALKKLA 201


>gi|170739181|ref|YP_001767836.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46]
 gi|229560104|sp|B0UA56|RUVA_METS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|168193455|gb|ACA15402.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46]
          Length = 205

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 128/206 (62%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y ++C  RTL  L   G+   L +ET +R+D IRL
Sbjct: 1   MIGKLKGVVDSYGEDFVILDVHGVGYEVHCSARTLQRLPPAGEATDLAIETVVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+G+LS +   EL  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGLLSVLEPAELATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + V    +      +A     P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPVDPALVRLAGAVEARTA--PQPVADAISALVNLGYPQAQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + L+     A+   +IRL LR ++
Sbjct: 179 VAAALQSAGAEAEAKTLIRLGLRELA 204


>gi|319953601|ref|YP_004164868.1| holliday junction DNA helicase subunit ruva [Cellulophaga algicola
           DSM 14237]
 gi|319422261|gb|ADV49370.1| Holliday junction DNA helicase subunit RuvA [Cellulophaga algicola
           DSM 14237]
          Length = 193

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      +V+I+  GV Y +   + T S +    +   LF    +++D   L
Sbjct: 1   MIHHLKGKLVEKNPTHVVIECGGVGYFVNISLHTFSKITDA-ENIQLFTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+GA +A  +LS ++  ++ ++I   N   I  I GI  K 
Sbjct: 60  FGFSEKSEREIFRLLVSVSGIGASIARTMLSSMSPMQIRDAIATANVSAIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  +          ++    S  +    A+SAL  LG+ + Q+   
Sbjct: 120 AQRVILDLKDKILKIYDI----------DEVSSISNNTNKDEALSALEVLGFIRKQSEKI 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL ++ ++     II+L+L+ +
Sbjct: 170 VDKVLAQDASL-SVEDIIKLSLKNL 193


>gi|294651065|ref|ZP_06728403.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvA [Acinetobacter haemolyticus ATCC 19194]
 gi|292823044|gb|EFF81909.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvA [Acinetobacter haemolyticus ATCC 19194]
          Length = 201

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCIIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   L+ +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+       +    +   + + P     A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKALAHSTGSTTNAAAAQIQFMTNSP--VAEAEAALQSLGYKPAEAQ-- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 176 -KAVAAVKADYTESADIIRAALKSM 199


>gi|237723715|ref|ZP_04554196.1| holliday junction DNA helicase ruvA [Bacteroides sp. D4]
 gi|265756839|ref|ZP_06090827.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA]
 gi|229437926|gb|EEO48003.1| holliday junction DNA helicase ruvA [Bacteroides dorei 5_1_36/D4]
 gi|263233625|gb|EEZ19245.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA]
          Length = 197

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  +    V++D  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +        +  VN E     +       A+SAL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKIAT------SGVETVNSEMFANPANTEIHDEAVSALTMLGFAQAASQKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK+E   A   ++I+LAL+ +
Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197


>gi|118497616|ref|YP_898666.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. novicida U112]
 gi|195536317|ref|ZP_03079324.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           novicida FTE]
 gi|166230552|sp|A0Q6P7|RUVA_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118423522|gb|ABK89912.1| holliday junction DNA helicase, subunit A [Francisella novicida
           U112]
 gi|194372794|gb|EDX27505.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           novicida FTE]
          Length = 216

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +         S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMSRSAM---GDATTAAEVIRKALQ 209


>gi|170693379|ref|ZP_02884538.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M]
 gi|170141534|gb|EDT09703.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M]
          Length = 193

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGTVSASGHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V          S+ I+LAL+A+S
Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191


>gi|225012191|ref|ZP_03702628.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-2A]
 gi|225003746|gb|EEG41719.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-2A]
          Length = 193

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       V+ID  G+ Y +   + T S LG   +   LF    +R+D   L
Sbjct: 1   MITQIIGRLVEKSPTQVVIDCHGIGYEVNISLNTYSQLGD-DENIKLFTHLQIREDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++R  F LL SV G+GA +A  +LS +   ++  +II ++   I  I GI +K 
Sbjct: 60  FGFFTPMERSVFRLLLSVSGIGASIARTMLSSLEPQQIQRAIISEDLNTIKSIKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K ++L             E+    +  +    A+SAL  LGY + Q+   
Sbjct: 120 AQRVLIELKDKMLNLYE----------GEEIQSFANNTIKEEALSALEVLGYSRKQSEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + ++     +    +I+ AL  +
Sbjct: 170 IDNAIQSAPE-SSVEGLIKAALNKL 193


>gi|117923791|ref|YP_864408.1| Holliday junction DNA helicase RuvA [Magnetococcus sp. MC-1]
 gi|166230563|sp|A0L4V9|RUVA_MAGSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117607547|gb|ABK43002.1| Holliday junction DNA helicase subunit RuvA [Magnetococcus sp.
           MC-1]
          Length = 204

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG++   + D+V++DV GV Y ++  + T + L  +G+ C L+  TH+R+D   L
Sbjct: 1   MIAQLKGSLAAKHPDHVVMDVHGVGYRVFISLATYNELPTVGEACLLYTVTHVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+  R+ F LL SV G+G ++A+  LS  T   L+ ++  ++  ++  IPG+  K 
Sbjct: 61  YGFHSESQRKVFNLLTSVNGIGTKLALAALSSHTPEALLTALSREDLTLLCTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K  +L               A+   +        SAL+NLGY   Q   A
Sbjct: 121 AQRMAMELKDKLGALPMAAPTTAIGAATMAANPAGL---REEVASALLNLGYKPPQVDAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +   L     I D S  ++ AL+ ++
Sbjct: 178 LAK-LFSAGEITDISVALKGALKLLA 202


>gi|110800505|ref|YP_696628.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC
           13124]
 gi|123148615|sp|Q0TP12|RUVA_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110675152|gb|ABG84139.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC
           13124]
          Length = 201

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+G+   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K 
Sbjct: 61  YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       +  +   + +               +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKP--DELTSEEGELIEGINDNSDYSFNINETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDK----TLSIENMIKESLKLL 199


>gi|298206830|ref|YP_003715009.1| Holliday junction DNA helicase motor protein [Croceibacter
           atlanticus HTCC2559]
 gi|83849464|gb|EAP87332.1| Holliday junction DNA helicase motor protein [Croceibacter
           atlanticus HTCC2559]
          Length = 193

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       +++D  GV Y +   + T   L K  +   +F    +R+D   L
Sbjct: 1   MITQLAGQLIEKNPTNIIVDCGGVGYFVNISLHTFG-LIKNEECVKIFTHLQVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL  V G+GA  A  +LS +T  ++ E+I   +   I  + GI +K 
Sbjct: 60  FGFAEKAEREVFRLLIGVSGIGASTARTMLSSLTPQQVTEAISQGDVATIQSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +++  + +   S  N ++            A+SAL  LGY + Q+   
Sbjct: 120 AQRVIIDLKDKILNVVGLDEVLPSQGNTQK----------EEALSALETLGYTRKQSDKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK +   A    II+LAL+ +
Sbjct: 170 VAGILKTDPE-ASVETIIKLALKKL 193


>gi|226952125|ref|ZP_03822589.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC
           27244]
 gi|226837134|gb|EEH69517.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC
           27244]
          Length = 201

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   L+ +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L++      +    +   + + P     A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKALANSTGGTTNTAAAQIQFMANSP--VAEAEAALQSLGYKPAEAQ-- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 176 -KAVAAVKADYTESADIIRAALKSM 199


>gi|170699606|ref|ZP_02890645.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria
           IOP40-10]
 gi|171319639|ref|ZP_02908733.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5]
 gi|172059669|ref|YP_001807321.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6]
 gi|229560008|sp|B1YTE0|RUVA_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170135488|gb|EDT03777.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria
           IOP40-10]
 gi|171095130|gb|EDT40136.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5]
 gi|171992186|gb|ACB63105.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6]
          Length = 193

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++ALV LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASQSDHATDILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|295677647|ref|YP_003606171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002]
 gi|295437490|gb|ADG16660.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002]
          Length = 193

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERIVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGATSPSDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|254374431|ref|ZP_04989913.1| holliday junction DNA helicase RuvA [Francisella novicida
           GA99-3548]
 gi|151572151|gb|EDN37805.1| holliday junction DNA helicase RuvA [Francisella novicida
           GA99-3548]
          Length = 216

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGALIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +         S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|320528952|ref|ZP_08030044.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399]
 gi|320138582|gb|EFW30472.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399]
          Length = 198

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     D+ L+DV  V Y ++   +T + + + G+   L++ TH+R+D I L
Sbjct: 1   MIGFLRGTVVHSAVDHCLLDVHNVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L  + G+G + A  +LS +T  +    I  ++ K I ++PGI  K 
Sbjct: 60  YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKDVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +     D S V  + +      S    A  AL++LG+ Q++    
Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAVVSDVSD-----SMLAEATEALMSLGFQQNE---- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V + + +     +++R AL  +
Sbjct: 171 IQTVFQGKTDYQSTEELVRYALSVL 195


>gi|212690798|ref|ZP_03298926.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855]
 gi|237708184|ref|ZP_04538665.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA]
 gi|212666675|gb|EEB27247.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855]
 gi|229457737|gb|EEO63458.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA]
          Length = 197

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  +    V++D  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +        +  VN E     +       AISAL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKIAT------SGVETVNSEMFANPANTEIHDEAISALTMLGFAQAASQKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK+E   A   ++I+LAL+ +
Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197


>gi|320352803|ref|YP_004194142.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM
           2032]
 gi|320121305|gb|ADW16851.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM
           2032]
          Length = 208

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++    +  ++DV GV Y +   +RT   L ++G  C L V+T +R+D I L
Sbjct: 1   MIASLSGLVQWKGPNMAILDVNGVGYELCISVRTYDALPEVGGTCFLLVQTVVREDAISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F+LL +V G+G ++A  +LS I    L  +I  ++   +  +PG+  K 
Sbjct: 61  YGFSRKEEKDLFLLLITVSGIGPKLAQTILSGIGVEALCGAITAKDLSQLTALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  EL  K   + + +  + +                 +A SAL+NLGY Q  A  A
Sbjct: 121 AQRLCVELGEKVGGIGAGLAIEGT---PPLVAPAGDSQVMADAASALINLGYPQAIAWQA 177

Query: 181 VVSVLKKEKNIAD---DSQIIRLALRAIS 206
           + +V ++     D     ++IR ALR+++
Sbjct: 178 LRNVEQQLPPGTDAPRVEELIRQALRSLA 206


>gi|115350636|ref|YP_772475.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD]
 gi|122324004|sp|Q0BI82|RUVA_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115280624|gb|ABI86141.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD]
          Length = 193

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++ALV LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASQSDHAADILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|260551462|ref|ZP_05825646.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624]
 gi|260405456|gb|EEW98949.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624]
          Length = 203

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 5   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 64  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S V        +  S    A +AL +LGY   +A   
Sbjct: 124 AERLMIELRDRFKTLA----QGTSTVATMPQIQFAANSPVAEAEAALQSLGYKPLEAQ-- 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 178 -KAVAAVKADYTESADIIRAALKSM 201


>gi|312892324|ref|ZP_07751819.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter
           paludis DSM 18603]
 gi|311295108|gb|EFQ72282.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter
           paludis DSM 18603]
          Length = 194

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      YV+ID  GV Y I   + T S +    + C LF   H+++D   L
Sbjct: 1   MYAYINGKLAFKCPTYVIIDAGGVGYHINISLNTYSNISD-KESCKLFTWLHVKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F+ L SV G+GA     +LS IT  E+  +II  +  +I +I GI  K 
Sbjct: 60  YGFADEGERRLFLHLISVSGIGANTGRMILSSITPAEIQNAIIKGDVPLIQRIKGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K                    ++  + +    A+SALV LG+ ++    A
Sbjct: 120 AQRIVLELQDKLRKDGP----------DTLINVPVIHTAKDEALSALVMLGFAKNVGEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +K   +     Q+I++AL+ +
Sbjct: 170 LDNAIKSTTDNLTVEQLIKIALKNL 194


>gi|124002681|ref|ZP_01687533.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134]
 gi|123991909|gb|EAY31296.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134]
          Length = 194

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      + +IDV GV Y I   + T + L   GD C L     +R+D   L
Sbjct: 1   MFAYISGKLAHKEPTFAVIDVHGVGYQINISLNTYTALPISGD-CKLHTWLQVREDAQNL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F+LL SV G+GA  A+ +LS ++ +E+  +I  ++ K I  I GI +K 
Sbjct: 60  YGFTELAEKKLFLLLISVSGIGANTALVMLSSMSVSEIQTAIASEDVKAIKSIKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K       +                  +    A+ AL+ LGY ++ A   
Sbjct: 120 AQRVILELKDKVQKEVGSIA---------VTPATQQSAVKDEAVMALITLGYAKNVAEKN 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  + K + N      +I+ AL+
Sbjct: 171 VAKIFKTKGNDVKVEDVIKEALK 193


>gi|333029161|ref|ZP_08457222.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           coprosuis DSM 18011]
 gi|332739758|gb|EGJ70240.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           coprosuis DSM 18011]
          Length = 199

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  L     ++D  GV Y +   + T S L +    C L+++  +R+D  +L
Sbjct: 1   MIEYVKGELAELTPAQAVVDCNGVGYGVSISLNTYSAL-QGKKECKLYIQEVIREDAHQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R+ F+LL SV G+G   A  +LS ++  ELVE+I  +N+K++  + GI  K 
Sbjct: 60  FGFINKEERELFLLLNSVSGIGGNTARMILSALSPVELVEAIGTENTKLLQSVKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  S + V    ++          S       +ISAL  LG+        
Sbjct: 120 AERIIVDLKDKIKSTAIVENGHVTVGES----TLSDMDIYNESISALTMLGFAPAPTRKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ K+  N     ++++LAL+ +
Sbjct: 176 VHAIFKENPNHT-IEEVVKLALKRL 199


>gi|256425896|ref|YP_003126549.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM
           2588]
 gi|256040804|gb|ACU64348.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM
           2588]
          Length = 195

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V IDVQGV Y +   + T S + +  + C L    H+++D   L
Sbjct: 1   MIAYLNGKLSYKSPAMVHIDVQGVGYEVQISLNTYSRI-QGSESCKLLTYLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F+LL SV G+GA  A  +LS +   ++  +I ++N K++  I GI  K 
Sbjct: 60  YGFADDAERQMFLLLISVSGIGANTARMMLSSLQPEDIQRAIAMENEKMLESIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K      +           Q  +    +   +A++ALV LG  ++ A  A
Sbjct: 120 AKRVILELKDKVKKQKDI---------GNQISVTPNNTIQEDALNALVTLGIARNVAEQA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK E  + D   +I+ +L+ +
Sbjct: 171 INKVLKAEPLLLDLEALIKKSLKGL 195


>gi|190893294|ref|YP_001979836.1| holliday junction DNA helicase [Rhizobium etli CIAT 652]
 gi|229560121|sp|B3PYZ4|RUVA_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190698573|gb|ACE92658.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 204

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 145/206 (70%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T +EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPSELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203


>gi|154252563|ref|YP_001413387.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans
           DS-1]
 gi|171769603|sp|A7HUZ7|RUVA_PARL1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154156513|gb|ABS63730.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans
           DS-1]
          Length = 205

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK++G ++   ED+ +IDV GV Y + C  RTL  L   G   TL +ET +  + IRL
Sbjct: 1   MIGKLRGIVDSTGEDWAVIDVGGVGYHVTCSSRTLRNLPPAGGAVTLSIETKVSDEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF +D +R+WF LL +VQGVG RVA+GVL  +   +L  +I L + K ++  PG+  K+
Sbjct: 61  IGFTTDSEREWFRLLLAVQGVGTRVALGVLGTLAPADLARAIALDDKKAVSAAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+TELK K      +       VN E   + S+ + A +A+SALVNLGY Q QA  A
Sbjct: 121 AARIVTELKDKVPDSMGLSAALEVGVNGEA--VSSVSAPARDAVSALVNLGYPQAQAMGA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  K+  + A   Q+IR  L+ ++
Sbjct: 179 VAAAAKRLDDAASTEQLIRHGLKELA 204


>gi|330683931|gb|EGG95698.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU121]
          Length = 200

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V++DV GV Y I  P  +      +     +F    +R+D   L
Sbjct: 1   MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTP-NSYRFQKYLDKEVQIFTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L  V G+G + A+ +L+  T  E+ ++I  +N   + + PGI  K 
Sbjct: 60  YGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK           ++ +N+  A+     S    A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVQITEENTDTLLNVMNESNAN----ESMIKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VLK+  N+    + +++ L+ +
Sbjct: 175 VEKVLKQS-NMESVDEAVKIGLQTL 198


>gi|239637553|ref|ZP_04678525.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603]
 gi|239596771|gb|EEQ79296.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603]
          Length = 200

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V++DV GV Y I  P  +      +     +F    +R+D   L
Sbjct: 1   MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTP-NSYRFQKYLDKEVQIFTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L  V G+G + A+ +L+  T  E+ ++I  +N   + + PGI  K 
Sbjct: 60  YGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK           ++ +N   A+     S    A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVQITEENSDTLLNVMNDSNAN----ESMIKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VLK+  N+    + +++ L+ +
Sbjct: 175 VEKVLKQS-NMDSVDEAVKIGLQTL 198


>gi|310643559|ref|YP_003948317.1| holliday junction ATP-dependent DNA helicase ruva [Paenibacillus
           polymyxa SC2]
 gi|309248509|gb|ADO58076.1| Holliday junction ATP-dependent DNA helicase ruvA [Paenibacillus
           polymyxa SC2]
          Length = 204

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++  L  +YV++DVQGV Y ++CP        K      ++   H+R+D I L
Sbjct: 1   MIDFLRGSVAHLENEYVVLDVQGVGYRVFCPNP--YAFAKTEGPVVIYTHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++Q F  L  V G+G RVA+G+L   T   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFATREEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   + ++     + +  E A      S+   A  AL  LGY   +    
Sbjct: 119 AQRMILDLKDKLDGIGAL--GMATGLFAEPAVEEGQGSYWSEAREALKALGYTDAELDKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K       +++ AL+ +
Sbjct: 177 WSKMKKDAKPDDSADILMKRALQLL 201


>gi|220928772|ref|YP_002505681.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum
           H10]
 gi|254766954|sp|B8I1A3|RUVA_CLOCE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219999100|gb|ACL75701.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum
           H10]
          Length = 199

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E    D ++++  G+ Y I+  + T++ +G+ G    ++   ++R+D   L
Sbjct: 1   MFAYIKGTVEEKNNDSIIVEAGGIGYRIFTALSTINNMGQNGTTVKIYTHYYVREDIAVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F +L +V GVG + A+ ++S ++ +    +++ Q++K + + PGI MK+
Sbjct: 61  YGFGTVEELTMFEMLLTVSGVGPKAAISMISTLSPSRFYLAVVSQDTKSLTKAPGIGMKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K           M+     +    +  S    A+SAL+ LGYG  +A++ 
Sbjct: 121 AQRIILDLKDKISKEQLTSSIPMTSPENNE---VTGDSVLSEAVSALMVLGYGSAEASST 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + +K        ++++ AL+++
Sbjct: 178 ISGIYEK---GISVEELVKKALKSL 199


>gi|150004217|ref|YP_001298961.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus ATCC
           8482]
 gi|254884765|ref|ZP_05257475.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA]
 gi|294774978|ref|ZP_06740508.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510]
 gi|319644172|ref|ZP_07998697.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp.
           3_1_40A]
 gi|166230518|sp|A6L0X5|RUVA_BACV8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149932641|gb|ABR39339.1| Holliday junction DNA helicase ruvA [Bacteroides vulgatus ATCC
           8482]
 gi|254837558|gb|EET17867.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA]
 gi|294451187|gb|EFG19657.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510]
 gi|317384294|gb|EFV65265.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp.
           3_1_40A]
          Length = 197

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  +    V++D  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +        +  VN E             A++AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKIAT------SGVETVNSEMFANPGNTEIHDEAVAALTMLGFAQAASQKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK+E   A   ++I+LAL+ +
Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197


>gi|227872463|ref|ZP_03990804.1| possible crossover junction endonuclease RuvA [Oribacterium sinus
           F0268]
 gi|227841694|gb|EEJ51983.1| possible crossover junction endonuclease RuvA [Oribacterium sinus
           F0268]
          Length = 199

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +  + ED ++I+  G+ Y +  P        K G+   L     +R+D   L
Sbjct: 1   MIRFIHGILREVKEDMLVIEAGGLGYGVRIPASVFDKAPKTGEEILLHTYFSVREDSQEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + DR +F+ L SV G+G + A+G+ S ++  EL+ +II  +SK I + PG+  K 
Sbjct: 61  FGFWEERDRDFFIKLLSVSGIGPKTALGIFSCMSREELIHAIISNDSKKIQKAPGLGKKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K         +D++   +E     +       A+ ALV+LGY   +A   
Sbjct: 121 AERLIVELRDKVPK------EDITFSGEEAVETTATSVAVEEAVEALVSLGYSVMEAKRW 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S+   E+  A   +++R++L+  +
Sbjct: 175 IRSIPAYEEKTA--EELLRISLKQFA 198


>gi|114330310|ref|YP_746532.1| Holliday junction DNA helicase RuvA [Nitrosomonas eutropha C91]
 gi|122314644|sp|Q0AJA4|RUVA_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114307324|gb|ABI58567.1| Holliday junction DNA helicase subunit RuvA [Nitrosomonas eutropha
           C91]
          Length = 194

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   VL+DVQG  Y I  P+ T   L  IG   TL     +R+D   L
Sbjct: 1   MIGRITGLLLEKHPPLVLVDVQGTGYEIDVPMSTFCKLPDIGKKVTLHTHFWVREDVHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+++ +R  F  L  + G+GAR  + +LS ++ T+L ++++ Q+S  + +IPGI  K 
Sbjct: 61  FGFMTEQERALFRQLTKISGIGARTGLAILSGLSVTDLHQAVVSQDSIRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   ++ + +   +  N ++           + +SAL+ LGY   +   A
Sbjct: 121 AERLLLELRDKIDPVAILSEAGAAASNVDK-----------DILSALLALGYNGREVNRA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               L++       S  I  +L+ +S
Sbjct: 170 ----LEQLSEGVTVSDGIMQSLKFLS 191


>gi|134294766|ref|YP_001118501.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4]
 gi|166230530|sp|A4JBL3|RUVA_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134137923|gb|ABO53666.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4]
          Length = 193

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++ALV LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASPSDHAADILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S  I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191


>gi|323527310|ref|YP_004229463.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001]
 gi|323384312|gb|ADX56403.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001]
          Length = 193

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGVMAGAVSASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|209965101|ref|YP_002298016.1| Holliday junction DNA helicase RuvA [Rhodospirillum centenum SW]
 gi|226698737|sp|B6ITI5|RUVA_RHOCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209958567|gb|ACI99203.1| holliday junction DNA helicase RuvA [Rhodospirillum centenum SW]
          Length = 206

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ ++DV GV Y++    RTL  L   G+  +L  E  + +D I+L
Sbjct: 1   MIAKLTGLLDSTGLDWAIVDVGGVGYLVSASARTLRRLAAPGEAVSLLTEMWVSEDNIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R WF LL +VQGVGARVA+ +LS ++  EL  SI  Q+   + Q  G+  K+
Sbjct: 61  FGFADTEERDWFRLLTTVQGVGARVALNLLSALSPAELTNSIAAQDRTALCQADGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K  S  +      +      A          +A+SALVNLGY + +A TA
Sbjct: 121 AARILNELKEKVASFGAPAPAAATAGKGGAAPAGPA-GAVADAVSALVNLGYRRVEAFTA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V ++    A  S +IR  L+ +S
Sbjct: 180 VNAVAQRLGPEAGVSDLIRAGLKELS 205


>gi|293609857|ref|ZP_06692159.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828309|gb|EFF86672.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123084|gb|ADY82607.1| holliday junction helicase subunit A [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 199

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S V        +  S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKTLA----QGTSTVATMPQIQFAANSPVAEAEAALQSLGYKPLEAQ-- 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197


>gi|206561676|ref|YP_002232441.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           J2315]
 gi|229560010|sp|B4EES6|RUVA_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|198037718|emb|CAR53661.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315]
          Length = 193

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTQQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASPSDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|323486643|ref|ZP_08091964.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14163]
 gi|323400024|gb|EGA92401.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14163]
          Length = 203

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D ++++   V   IY P+  L  L  +G+   ++    +R+D + L
Sbjct: 1   MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  V G+G + A+G+LS ++  +L  +I+  ++K I++ PG+  K 
Sbjct: 61  YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +   +          E+  +  M      A +ALV LGY   +A+ A
Sbjct: 121 AQRIILDLKDKVSAEEMLAS---VADTDERTSVPLMQEAGREAATALVALGYSNLEASKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V  +     D   ++R +L+ ++
Sbjct: 178 VKNV--QITEDMDAEAVLRASLKYLA 201


>gi|307730947|ref|YP_003908171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003]
 gi|307585482|gb|ADN58880.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003]
          Length = 193

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGAVSASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S  I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191


>gi|241206204|ref|YP_002977300.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860094|gb|ACS57761.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 204

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRTAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDNADSAKLIRLGLKELA 203


>gi|330815560|ref|YP_004359265.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia
           gladioli BSR3]
 gi|327367953|gb|AEA59309.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia
           gladioli BSR3]
          Length = 193

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPHTGERVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL + + LQ+S  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKISGIGARMALAVLSGMSVQELSQVVTLQDSARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +     E A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGELAGQASQSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S  I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSDGIKLSLKALS 191


>gi|327194147|gb|EGE61017.1| holliday junction DNA helicase protein [Rhizobium etli CNPAF512]
          Length = 204

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203


>gi|84687718|ref|ZP_01015591.1| Holliday junction DNA helicase motor protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664301|gb|EAQ10792.1| Holliday junction DNA helicase motor protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 222

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +D+VLIDV+GV YI++   RTL+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLSGRIDYKGDDHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTDMIVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S ++++WF LL +VQG+GA+ A  +L  + A  +  +I L +   +    G+  K 
Sbjct: 61  HGFTSLVEKEWFRLLMTVQGIGAKAATAILGTLGADGVSRAIALGDWNAVKAAKGLGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--------------QAHICSMPSFAINAISA 166
           A R++ ELK KA ++ ++         ++              +A           A+SA
Sbjct: 121 AQRVVNELKDKAPTIMAMGAGQTVSAPEDVLVESDATPVAAAPRAAPKPANMAQPEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG  +A +AV + L  + ++ D +++IR AL+ ++
Sbjct: 181 LANLGYGPGEAASAVATALGDDPDL-DTAKLIRAALKLLA 219


>gi|311748060|ref|ZP_07721845.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1]
 gi|126575044|gb|EAZ79402.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1]
          Length = 199

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      YVLIDV G+ Y +   ++T S + K  +   L    H+++D   L
Sbjct: 1   MIDYLHGKLVFKDPTYVLIDVGGIGYHVKISLQTYSQI-KDEEQIKLLTYLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F+LL S+ GVG    + +LS ++  E+ +SI+  +   I  + GI  K 
Sbjct: 60  YGFKNADEKRLFLLLISINGVGPNTGLMILSSLSTEEIEQSILSGDVATIQHVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K          D S  + +   + +  +    A+ AL+ LG+ +  A   
Sbjct: 120 AQRIILELKDKVGK-----ATDSSSGDSQVGFLNAHNNLREEALKALITLGFPKTAAEKN 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + +VLKK        ++I+ +L+
Sbjct: 175 IRAVLKKTTGEISLEELIKASLK 197


>gi|297181902|gb|ADI18079.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           Acidobacteriales bacterium HF0200_23L05]
          Length = 198

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       +++D+ GV Y +  P+ T   LG++G    L + TH+R+D + L
Sbjct: 1   MIATLHGVLTEKNPSRLVVDISGVGYEVSVPLSTFYALGELGAEVDLRIHTHVREDALSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+   F  L ++ GVG R+A+ VLS +   +L+ +I   +   +  IPG+  K 
Sbjct: 61  FGFATQLEIDLFGRLIAISGVGPRLALAVLSGLEPPDLLRAIQDSDIVRLQGIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K  S      +     N  +           + +SAL+NLGY +  A  A
Sbjct: 121 AERISLELKDKLPSNVLTEGETKDFKNGTE-------QVRRDVMSALLNLGYHRPLAERA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VL     +    + +RLALR ++
Sbjct: 174 VKEVLT--GEVHTFEETLRLALRELA 197


>gi|285808235|gb|ADC35769.1| Holliday junction DNA helicase RuvA [uncultured bacterium 293]
          Length = 198

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I        +IDV GV Y +  P+ T   LG  GD  TL V TH+R+D I L
Sbjct: 1   MIAQLTGRIARKEPQEAVIDVGGVGYRVTIPVSTFYRLGVDGDTITLRVHTHLREDTIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L +V  VG ++A+ +LS I   EL++++   +   + +IPG+  K 
Sbjct: 61  FGFATASEHDLFEKLITVANVGPKLAVNILSGIETDELIQALRGGDLARLTRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K                          +   + +SALV+LGY + +A  A
Sbjct: 121 AERLVLELKDKMPK--------PGTAAAAPDAPPDGGAEREDVLSALVHLGYSRAEAERA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    ++  +      ++R  LR++S
Sbjct: 173 VERATREGGSHR-FEDLLRQVLRSLS 197


>gi|17545220|ref|NP_518622.1| Holliday junction DNA helicase motor protein [Ralstonia
           solanacearum GMI1000]
 gi|20455245|sp|Q8Y235|RUVA_RALSO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17427511|emb|CAD14029.1| probable holliday junction dna helicase ruva protein [Ralstonia
           solanacearum GMI1000]
          Length = 193

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVALLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +           ++   A++ ++AL+ LGY   +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGTVPGGPAVSDDAVDVLNALLALGYSDKEAAQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|89889458|ref|ZP_01200969.1| Holliday junction DNA helicase ruvA [Flavobacteria bacterium BBFL7]
 gi|89517731|gb|EAS20387.1| Holliday junction DNA  helicase ruvA [Flavobacteria bacterium
           BBFL7]
          Length = 193

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V+ID  GV Y +   + T S + + G+   LF    +R+D  RL
Sbjct: 1   MIAQLQGKLVEKNLTDVVIDCGGVGYFVEISLHTYSLIPE-GELIKLFTFMQVREDSQRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R+ F LL SV G+GA  A  +LS +   ++ ++I   + + I  + GI  K 
Sbjct: 60  FGFMEKSEREVFKLLLSVSGIGASTARTMLSSLEPRQIAQAIASGDVRTIQSVKGIGAKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +          +  E   + S  +    A+SAL  LGY + QA   
Sbjct: 120 AQRVILDLKDKILQV----------LEGEDISLHSSNTGRDEALSALETLGYLRKQAQKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L  E + A    +I+ AL+ +
Sbjct: 170 VDKILASEPD-ASVETLIKGALKQL 193


>gi|116253728|ref|YP_769566.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|122988385|sp|Q1MC53|RUVA_RHIL3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115258376|emb|CAK09479.1| putative Holliday junction DNA helicase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 204

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSTGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +   EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLPPGELANAIALQDRTAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIGLKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + +K     AD +++IRL L+ ++
Sbjct: 178 IAAAMKTAGEGADSAKLIRLGLKELA 203


>gi|291557651|emb|CBL34768.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum
           V10Sc8a]
          Length = 199

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +ID  GV Y       TLS L KIG+   L     +R+D + L
Sbjct: 1   MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +   F +L SV GVG + A+ +LS +T       +   + K +   PGI  K 
Sbjct: 60  FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            S V      + +  +    A+SAL+ LGY   +A +A
Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEAASA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               L      A   ++IR  L+ ++
Sbjct: 176 ----LSGLDPSAPSDELIRAGLKKLA 197


>gi|167750454|ref|ZP_02422581.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702]
 gi|167656605|gb|EDS00735.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702]
          Length = 199

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +ID  GV Y       TLS L KIG+   L     +R+D + L
Sbjct: 1   MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +   F +L SV GVG + A+ +LS +T       +   + K +   PGI  K 
Sbjct: 60  FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            S V      + +  +    A+SAL+ LGY   +AT+A
Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEATSA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               L      A   ++IR  L+ ++
Sbjct: 176 ----LSGLDPSAPSDELIRAGLKKLA 197


>gi|94501014|ref|ZP_01307538.1| Holliday junction DNA helicase motor protein [Oceanobacter sp.
           RED65]
 gi|94426761|gb|EAT11745.1| Holliday junction DNA helicase motor protein [Oceanobacter sp.
           RED65]
          Length = 203

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +LI+V G+ Y ++ P+ T+  L ++G   TL     +R+D   L
Sbjct: 1   MIGRISGTLLEKLPPELLIEVNGLGYEVHAPMTTIYALPEVGQGVTLHTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++A+ +LS I     V S+   +S  + +IPGI  K 
Sbjct: 61  YGFSDKQQRALFRALIKVSGVGPKLALAILSGIETDTFVRSVHDGDSATLVRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +       V  D+  +        S   +   A  AL+ LGY   +A   
Sbjct: 121 AERLIVEMKDRLKEWQ--VDSDLPLMAAANPAPASQDQWIQEAEGALIALGYKPTEAA-- 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++   ++ +     +IRLAL+ +
Sbjct: 177 -KAIAAIKEPVNGSEDLIRLALKGM 200


>gi|169795065|ref|YP_001712858.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AYE]
 gi|213158273|ref|YP_002320324.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB0057]
 gi|215482614|ref|YP_002324806.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB307-0294]
 gi|239501033|ref|ZP_04660343.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB900]
 gi|260556549|ref|ZP_05828767.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC
           19606]
 gi|301344817|ref|ZP_07225558.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB056]
 gi|301510228|ref|ZP_07235465.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB058]
 gi|301595121|ref|ZP_07240129.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB059]
 gi|332851087|ref|ZP_08433196.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013150]
 gi|332869664|ref|ZP_08438852.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013113]
 gi|226698802|sp|A3M7W0|RUVA_ACIBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725429|sp|B7GYB6|RUVA_ACIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725430|sp|B7I5A8|RUVA_ACIB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229470533|sp|B0VDI6|RUVA_ACIBY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169147992|emb|CAM85855.1| holliday junction helicase subunit A [Acinetobacter baumannii AYE]
 gi|193078070|gb|ABO13004.2| holliday junction helicase subunit A [Acinetobacter baumannii ATCC
           17978]
 gi|213057433|gb|ACJ42335.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB0057]
 gi|213986860|gb|ACJ57159.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB307-0294]
 gi|260409808|gb|EEX03108.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC
           19606]
 gi|332730251|gb|EGJ61576.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013150]
 gi|332732566|gb|EGJ63799.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013113]
          Length = 199

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S             S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQ-- 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197


>gi|167586148|ref|ZP_02378536.1| Holliday junction DNA helicase motor protein [Burkholderia
           ubonensis Bu]
          Length = 193

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLSPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLGADLGTLAGAASPSDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|186477304|ref|YP_001858774.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815]
 gi|229560012|sp|B2JGU4|RUVA_BURP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|184193763|gb|ACC71728.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815]
          Length = 193

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++LID  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPGTGEKVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGIGARMALAVLSGMSVQELSQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGAASQSDHASDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|94309369|ref|YP_582579.1| Holliday junction DNA helicase RuvA [Cupriavidus metallidurans
           CH34]
 gi|123384032|sp|Q1LRB6|RUVA_RALME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|93353221|gb|ABF07310.1| component of RuvABC resolvasome, regulatory subunit [Cupriavidus
           metallidurans CH34]
          Length = 193

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L  IG   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAIGHPVTLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + GVGAR+A+ VLS ++  EL +++ +Q +  + +IPGI  K 
Sbjct: 61  FGFATATERNTFRELIKITGVGARMALAVLSGLSVPELAQAVTMQEAGRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +            +   A++ ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGHAPGATPLADSAVDILNALLALGYSEKEAAQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191


>gi|313677422|ref|YP_004055418.1| holliday junction DNA helicase ruva [Marivirga tractuosa DSM 4126]
 gi|312944120|gb|ADR23310.1| Holliday junction DNA helicase RuvA [Marivirga tractuosa DSM 4126]
          Length = 197

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG+I  L   +++I+V GV Y +  P+ T     K      +    H+++D   L
Sbjct: 1   MISYLKGSIIELEPTHLIIEVGGVGYHVIIPMSTYDAF-KSQKEVKVLTHFHVKEDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F+ L  + G+G   A+G+LS +   E+  SI+ +N K I  I GI  K 
Sbjct: 60  YGFYLPEERTVFLDLIGISGIGPSTAIGMLSAMNPNEIKSSIVAENVKQIQSIKGIGGKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +      + +         Q+   S  S    A+SAL+NLG+ ++ A   
Sbjct: 120 AQRVILELKDRYKKEGLITEST-------QSSGVSNNSLRNEALSALINLGFAKNSAEKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +L+  K      Q+I+ AL++
Sbjct: 173 IDKILQANKENITLEQLIKQALKS 196


>gi|260887321|ref|ZP_05898584.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
 gi|330838926|ref|YP_004413506.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
 gi|260862957|gb|EEX77457.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
 gi|329746690|gb|AEC00047.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
          Length = 201

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L  D+  +DV GV Y ++    T   L  +G+  TLF    +R+D + L
Sbjct: 1   MIGFLRGKVARLSLDFCFLDVAGVGYRVFISGATHGRL-HMGEEVTLFTHLAVREDAMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ + + F +L SV G+G + A+G+LS IT   L  ++  + + ++ + PGI  K 
Sbjct: 60  YGFFSEEEYELFQMLISVTGIGPKAALGILSNITPENLCLAVRNKKADILTKAPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       + +  + V +         +    A +AL++LGY Q +    
Sbjct: 120 AERIILELKDKMKGF---MTEHEAIVEEGLLEEPVEDTMLAEAGAALLSLGYTQAE---- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              +L++ K+  D   +IR AL+  +
Sbjct: 173 FTPILRRAKDCKDAEALIRFALKEFA 198


>gi|297569179|ref|YP_003690523.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925094|gb|ADH85904.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 215

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 9/215 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D +++ V GV Y ++ P      L  +G+   L+++T +R+D   L
Sbjct: 1   MIASLQGKLAHKGPDSLVLQVGGVGYEVFLPASRHDRLPAVGEELFLYIQTVVREDSFNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL  V GVG R+AM +L+      L  +II  +   + ++PG+  K 
Sbjct: 61  YGFPDSREKRMFQLLLGVSGVGPRLAMNILAAAEPAALSRAIIAGDIVFLKKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-------NAISALVNLGYG 173
           A R+  EL  K     +      + V    A   S  + A        +A SAL+NLGY 
Sbjct: 121 AERLCLELGDKMEFFPTATTDAGTVVGPGAALSPSSAAAADFNEPSFQDAYSALLNLGYP 180

Query: 174 QDQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206
             QA  A+  +        +    +++R ALR+++
Sbjct: 181 ASQARAALEGLRSAADVSLELPVEELLRQALRSLA 215


>gi|253699567|ref|YP_003020756.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21]
 gi|259495645|sp|C6E1S9|RUVA_GEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|251774417|gb|ACT16998.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21]
          Length = 199

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     +++++DV GV Y ++ P  T   L   G   +L + T +++D I L
Sbjct: 1   MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPAEGGALSLQIHTSVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL  V GVG ++A G+LS    +EL +S++  N   ++ IPGI  K 
Sbjct: 61  YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L     Q        +  I        + +SAL+NLGY +     A
Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGATAPAKQEI------RDDVLSALINLGYKEAVVQKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  K    A    +++ AL+ +
Sbjct: 175 LAEL--KVTEDATVELVLKQALKIL 197


>gi|56551051|ref|YP_161890.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|81355594|sp|Q5NR75|RUVA_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56542625|gb|AAV88779.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 213

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D  +IDV GV Y++    R L    +I    T+ +ET +R+D I L
Sbjct: 1   MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S L+R WF LL SVQGVG + A+ +L+ +T   +  +I   +  +I +  GI  KI
Sbjct: 61  FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ ELK K  +++           +  +++  A      +F  +A+SAL+NLG+   
Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFMADAVSALLNLGFKPA 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           +A   V    ++  + A    ++RLALR +S 
Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR-LSS 211


>gi|328957015|ref|YP_004374401.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium
           sp. 17-4]
 gi|328673339|gb|AEB29385.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium
           sp. 17-4]
          Length = 210

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y ++          K+ +  T++V   +R+D I L
Sbjct: 7   MYEYIKGIVTFVSPAYIVLETNGIGYQLFI-ANPFRFSSKLNEEITIYVHQAVREDAITL 65

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q ++ L SV G+G +  + +L+      LV++I  +++  + + PG+  K 
Sbjct: 66  YGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDNHQGLVQAIENEDAAYLTKFPGVGKKT 125

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L+ V   + +   +++  + +  +    A+ AL  LGY   +    
Sbjct: 126 ASQIVLDLKGKLADLT-VAPLENAADYQQELVLSTNYNHVTEAMEALEALGYSAKEIKKI 184

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K   D    +R ALR +
Sbjct: 185 EPQIRKLNKESTD--AYLREALRLL 207


>gi|260587811|ref|ZP_05853724.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583]
 gi|331083813|ref|ZP_08332922.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542076|gb|EEX22645.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583]
 gi|330403238|gb|EGG82798.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 203

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I  + ED V+++   + Y ++ P+  +  + + GD   ++   ++R+D ++L
Sbjct: 1   MIAYLKGEIVEILEDRVILEAGNIGYNLFMPMAGVDGVLRTGDETKIYTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F LL  V G+G + A+GVLS ++A EL  +++  + K I++ PGI  K 
Sbjct: 61  YGFLTKDDLNVFKLLLGVNGIGPKAALGVLSGLSADELRFAVLADDVKTISKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K  SL          V +    +  +      A+ AL  LGY    A  A
Sbjct: 121 AQKLILELKDKM-SLQEAFDLKSEHVQESAGSLSDVSDIKKEAVEALTALGYSGADALRA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V     +         +++ AL+ +
Sbjct: 180 VKH--TEITEGMSVEDLLKQALKNM 202


>gi|313895598|ref|ZP_07829154.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975724|gb|EFR41183.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 198

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     D+ L+DV  V Y ++   +T + + + G+   L++ TH+R+D I L
Sbjct: 1   MIGFLRGTVVHSAVDHCLLDVHDVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L  + G+G + A  +LS +T  +    I  +N K I ++PGI  K 
Sbjct: 60  YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKNVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +     D S V  + +      S    A  AL++LG+ Q++    
Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAVVSDVSD-----SMLAEATEALMSLGFQQNE---- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V + + +     +++R AL  +
Sbjct: 171 IQTVFQGKTDYQSTEELVRYALSVL 195


>gi|300856546|ref|YP_003781530.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436661|gb|ADK16428.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 198

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+ +DY++++  G+ Y I     T++   K+G+   L+++  +R+D I L
Sbjct: 1   MYEYIKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKVGENIVLYLQQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ G+GAR A+ +LS      L  +II ++ K + + PGI  K 
Sbjct: 61  YGFLTKEELSMFNLLLTINGIGARAALSILSISDVNNLKYAIISEDEKNLVRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K         +D            +        + AL+ LGY + +   A
Sbjct: 121 AQRIILELKDKIDVGELTNSED-------DIDNINATQNTSEVLEALIALGYSEKEGNKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+ K +++      +I+ AL+ +
Sbjct: 174 LASIDKTKES--STEDMIKKALKFL 196


>gi|160879481|ref|YP_001558449.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans
           ISDg]
 gi|189045749|sp|A9KNV9|RUVA_CLOPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160428147|gb|ABX41710.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans
           ISDg]
          Length = 203

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 2/203 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +  + E+YV++D  G+ Y I+ P    S L  IGD         +R+D + L
Sbjct: 1   MLAFIQGELAEVKENYVVVDNNGMGYEIFIPHTVHSYLPAIGDKVKFHTYLQVREDGMAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL +V G+G + A+G+LS I+  +L  +++ ++ K I++ PGI  K 
Sbjct: 61  FGFLNREDLAMFKLLITVNGIGPKGAIGILSAISTDDLRFAVLAEDVKAISKAPGIGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+++ ELK K     +      S          +       AI ALV LGY    A  A
Sbjct: 121 ASKLILELKDKFKLEDAFEATFQSNQVISTGGKGNNDGIREEAIQALVALGYSATDALKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V +V  +  +      +++ +LR
Sbjct: 181 VKAV--EITSNMTSEDVLKFSLR 201


>gi|260576656|ref|ZP_05844643.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2]
 gi|259021141|gb|EEW24450.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2]
          Length = 224

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 122/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D+VLIDV+GV YI++   RTL+ L   G+   L+ E  +R+D ++L
Sbjct: 1   MIGKISGRIDYRGADHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+++W  LL +VQGVGA+ AM +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTLLEKEWHRLLMTVQGVGAKAAMAILGTLGAEGAARAISLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISL----------------SSVVQQDMSCVNKEQAHICSMPSFAINAI 164
           A R++ ELK KA  +                 +V++          A   S  ++  +A+
Sbjct: 121 AQRVVLELKSKAPGVMAMGAALSARAEGNDADAVIEPLPVARKPTPAPTQSRAAYTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGYG   A+ AV     +    AD + +IR+AL+ ++
Sbjct: 181 SALTNLGYGPVDASQAVAQAAGEAPE-ADTATLIRIALKLLA 221


>gi|145640257|ref|ZP_01795841.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
 gi|145274843|gb|EDK14705.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.4-21]
          Length = 181

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 1/180 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAHAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180


>gi|15895553|ref|NP_348902.1| Holliday junction DNA helicase RuvA [Clostridium acetobutylicum
           ATCC 824]
 gi|20455254|sp|Q97GT0|RUVA_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15025290|gb|AAK80242.1|AE007729_9 Holliday junction specific DNA helicase, subunit ruvA [Clostridium
           acetobutylicum ATCC 824]
 gi|325509702|gb|ADZ21338.1| Holliday junction DNA helicase motor protein [Clostridium
           acetobutylicum EA 2018]
          Length = 201

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DY+++D  GV Y I+    T++ + K  +   +++   +RQD I L
Sbjct: 1   MYEYIKGKYIGINKDYIIVDNNGVGYKIFTSGNTMANMPKPEEDVLIYLTQIVRQDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F  L ++ GVGA+ ++ +LS  T   L  +II  + K I + PGI  K 
Sbjct: 61  YGFLTKDELEMFNKLLTINGVGAKASLSLLSICTVNNLKYAIITGDEKTIVKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  S    + +  S +N                  AL +LGY + +   A
Sbjct: 121 AQRIILELKDKFKSTD--ISKGNSEINNLDVDYDEHSKKLEEVRFALNSLGYSEKETDRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V K E        II+  LR +
Sbjct: 179 INNVDKSEG----IENIIKSCLRFL 199


>gi|255291934|dbj|BAH90422.1| Holliday junction DNA helicase RuvA [uncultured bacterium]
          Length = 190

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +       V+ID  GV Y +  P+ +   L  +G   TL     +R+D   L
Sbjct: 1   MIGHLRGQLAARNPPEVVIDCGGVGYEVLVPMSSFYNLPALGQEVTLLTHLVVREDAQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V GVG R A+ +LS ++A EL +++  Q S  + ++PGI  K 
Sbjct: 61  YGFGSAAERATFRELIKVSGVGPRTALALLSGMSAAELAQAVSAQESGRLTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++                     + + AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADLGPQAAPASDAQGDILQALLALGYNDREAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK        S+ I+LAL+A++
Sbjct: 168 ----LKALPQDVGVSEGIKLALKALA 189


>gi|332663957|ref|YP_004446745.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332771|gb|AEE49872.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 196

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++GNI      Y++++  GV Y+++  + T S + K  +   +    ++++D   L
Sbjct: 1   MITYLRGNITQKTPTYIVVETAGVGYLVHISLHTYSQIEK-KEEVKILTHLNIKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R  F  L SV GVG   A  +LS ++  EL  +II +  +V   + GI  K+
Sbjct: 60  YGFAEEAERSLFRHLISVSGVGPTTAQIMLSSLSPDELRAAIIGEQEQVFRAVKGIGPKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K I  S  +       N          +    A+SALV LG+ +     A
Sbjct: 120 AKRIILDLKDKLIKDSGDLPLTFPSQN---------NTIREEALSALVALGFQKIAVQKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +  +LK ++ I +  Q+I+LALR +S 
Sbjct: 171 LNHLLK-DQAIQNVEQLIKLALRELSA 196


>gi|194366898|ref|YP_002029508.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia
           R551-3]
 gi|229560131|sp|B4ST34|RUVA_STRM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194349702|gb|ACF52825.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia
           R551-3]
          Length = 197

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L ++G   TL+     ++D + L
Sbjct: 1   MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    +   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A           +          +      +A  AL  LGY   +A   
Sbjct: 121 AERMVLELRDRAAQFG-------AGGALPTGSGPAPADPLSDATVALQQLGYKPAEAARM 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A    +IR AL++
Sbjct: 174 AREAFNEGDEVAI---VIRKALQS 194


>gi|154482944|ref|ZP_02025392.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC
           27560]
 gi|149736228|gb|EDM52114.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC
           27560]
          Length = 197

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +E + +D V++D  G+ Y I+    TL  +G IG+   ++    +R+D ++L
Sbjct: 1   MISYISGVVEEIEKDKVVVDNNGIGYGIFASQSTLEQIG-IGEQVKIYTYFSVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  + Q F LL  V GVG +  + +LS      L  +++  ++K I++ PGI  K 
Sbjct: 60  YGFLSRQELQLFKLLIGVSGVGPKGGLAILSTCPGDSLSMAVLADDAKAISKAPGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK K         +DM         +        +A+ AL  LGY Q  A  A
Sbjct: 120 AQKIIIELKDKIDI------EDMIAGETISKPMTKASGVVGDAVEALTALGYSQTMAYQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+  +  +  D  +I++ AL+ I
Sbjct: 174 IKSI--ENVDGMDVEEILKKALKNI 196


>gi|184159149|ref|YP_001847488.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ACICU]
 gi|332875977|ref|ZP_08443763.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6014059]
 gi|229470530|sp|B2HWT2|RUVA_ACIBC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183210743|gb|ACC58141.1| Holliday junction resolvasome, DNA-binding subunit [Acinetobacter
           baumannii ACICU]
 gi|322509062|gb|ADX04516.1| ruvA [Acinetobacter baumannii 1656-2]
 gi|323519043|gb|ADX93424.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735843|gb|EGJ66884.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6014059]
          Length = 199

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS +    LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLNVELLVHTIEHDDVNTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S             S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQ-- 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197


>gi|193214311|ref|YP_001995510.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC
           35110]
 gi|229560019|sp|B3QVA9|RUVA_CHLT3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193087788|gb|ACF13063.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC
           35110]
          Length = 200

 Score =  221 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G +   +   ++++V GV Y++     T   L  IG+   +    ++R+D ++L
Sbjct: 1   MLSYLSGTLIEKFSTEIVVEVNGVGYLLNISATTHEKLPAIGNQIKILTYLYVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  DR+ F LL ++ GVG ++A  +LS ++  +L ES+I  ++K +  I G+  K 
Sbjct: 61  YGFITTEDREVFKLLIAISGVGPKLAQTILSGMSTAQLRESVIAGDTKALTAIAGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K + L      D+    KE A          +A SAL++LG+ +  A  A
Sbjct: 121 AERIILELKDKLVKL------DLKIDIKETAFRSDKQQVRNDAYSALISLGFTKSIAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + + + +  +      +IR+ALR
Sbjct: 175 MRAAIAEVPDG-SVDDLIRVALR 196


>gi|218905615|ref|YP_002453449.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
 gi|218536299|gb|ACK88697.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
          Length = 541

 Score =  221 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|206969835|ref|ZP_03230789.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134]
 gi|228954705|ref|ZP_04116728.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229180697|ref|ZP_04308037.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           172560W]
 gi|206735523|gb|EDZ52691.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134]
 gi|228602842|gb|EEK60323.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           172560W]
 gi|228805032|gb|EEM51628.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 205

 Score =  221 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDENKGSSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---ALTTDQYIKKALSLL 200


>gi|169632720|ref|YP_001706456.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii SDF]
 gi|229470531|sp|B0VT90|RUVA_ACIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169151512|emb|CAP00277.1| holliday junction helicase subunit A [Acinetobacter baumannii]
          Length = 199

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVIREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S             S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQ-- 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197


>gi|225181939|ref|ZP_03735373.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT
           1]
 gi|225167379|gb|EEG76196.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT
           1]
          Length = 200

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +    +D V++D QG+ + I  P   LS L  + +   LF    +R+D + L
Sbjct: 1   MFNYIRGTLVQKGKDTVVLDNQGIGWQISVPSTVLSGLHSLDEEVKLFTYLAVREDDLHL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F LL SV G+G + A+G+LS ++A E   +++ +N K + ++PG+  K 
Sbjct: 61  YGFLTADDLSLFKLLISVSGIGPKAALGILSSLSAAEFHLAVMHENVKALTRVPGVGPKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  +L                      S   +A+ ALV LGY   +A  A
Sbjct: 121 AKRLIVELKEKVAALG------TPQTVSATPQAGGTTSAYHDALEALVALGYNGSEAQAA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  ++ +     ++I+ AL  +
Sbjct: 175 LQTI--EDADRLSTEELIKKALAHL 197


>gi|241761371|ref|ZP_04759459.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374278|gb|EER63775.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 213

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D  +IDV GV Y++    R L    +I    T+ +ET +R+D I L
Sbjct: 1   MIARLVGFLVEKNSDSAIIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S L+R WF LL SVQGVG + A+ +L+ +T   +  +I   +  +I +  GI  KI
Sbjct: 61  FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ ELK K  +++           +  +++  A      +F  +A+SAL+NLG+   
Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           +A   V    ++  + A    ++RLALR +S 
Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR-LSS 211


>gi|325299672|ref|YP_004259589.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           salanitronis DSM 18170]
 gi|324319225|gb|ADY37116.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           salanitronis DSM 18170]
          Length = 199

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +      + ++D  GV Y I   + T S + +      LF+   +R+D   L
Sbjct: 1   MIEYIKGELAEAAPAFAVVDCNGVGYGINISLNTYSAI-QGKKEVKLFIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++  EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVPGIGGNTARMILSALSPRELCNVISTGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  S     +                      A++ALV LG+ Q  +  A
Sbjct: 120 AQRIIVDLKDKIASTGIEEE----ASTVSSLSHTVNTEIYEEAVAALVMLGFAQAPSQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+LK E + A   ++I+LAL+ +
Sbjct: 176 VASILKAEPDAA-VERVIKLALKML 199


>gi|209550796|ref|YP_002282713.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226698736|sp|B5ZP79|RUVA_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209536552|gb|ACI56487.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 204

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG   + C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSADEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDDADSAKLIRLGLKELA 203


>gi|163850397|ref|YP_001638440.1| Holliday junction DNA helicase motor protein [Methylobacterium
           extorquens PA1]
 gi|218528957|ref|YP_002419773.1| Holliday junction DNA helicase RuvA [Methylobacterium
           chloromethanicum CM4]
 gi|240137474|ref|YP_002961945.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens AM1]
 gi|229560101|sp|A9W1B3|RUVA_METEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766970|sp|B7L255|RUVA_METC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163662002|gb|ABY29369.1| Holliday junction DNA helicase RuvA [Methylobacterium extorquens
           PA1]
 gi|218521260|gb|ACK81845.1| Holliday junction DNA helicase RuvA [Methylobacterium
           chloromethanicum CM4]
 gi|240007442|gb|ACS38668.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens AM1]
          Length = 208

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + +    ++     +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTA--PQPVADAISALVNLGYAQIQASAA 178

Query: 181 VVSVLK---KEKNIADDSQIIRLALRAIS 206
           + + LK   +E    +   +IRL LR ++
Sbjct: 179 IAAALKGLGEEAGTVEAKTLIRLGLRELA 207


>gi|78065251|ref|YP_368020.1| Holliday junction DNA helicase motor protein [Burkholderia sp. 383]
 gi|90134649|sp|Q39JJ0|RUVA_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77965996|gb|ABB07376.1| DNA recombination protein, RuvA [Burkholderia sp. 383]
          Length = 193

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQNGERVVLLTQQIVREDANLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +     E A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLGADLGELAGAASPSDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|302035797|ref|YP_003796119.1| holliday junction DNA helicase RuvA [Candidatus Nitrospira
           defluvii]
 gi|300603861|emb|CBK40193.1| Holliday junction DNA helicase RuvA [Candidatus Nitrospira
           defluvii]
          Length = 202

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V +DV GV Y +  P+ T   L    +  TL + TH+R+D I+L
Sbjct: 1   MIALLTGLMAFKAPSQVTLDVHGVGYEVLIPLSTYYSLPNQHESVTLSIHTHVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +++ F+LL  + G+G ++ + VLS ++  +L  +I   + + +  + GI  K 
Sbjct: 61  YGFLTTAEKEAFLLLTGISGIGPKLGLSVLSTLSVRDLFSAIQAGDIEKLGTVSGIGKKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI  ELK K   L    +Q  S   +             +A+SALVNLGY Q     A
Sbjct: 121 AARIALELKDKVARLYPAGEQSTSGSGQPA------HPLYDDALSALVNLGYRQPDVKEA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + K          +IR AL+ ++
Sbjct: 175 LKRIEKSGAMAQGLEGVIREALKDLA 200


>gi|197119680|ref|YP_002140107.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem]
 gi|226698732|sp|B5EAH2|RUVA_GEOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|197089040|gb|ACH40311.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem]
          Length = 199

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     +++++DV GV Y ++ P  T   L   G   +L + T +++D I L
Sbjct: 1   MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPVEGGALSLQIHTSVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL  V GVG ++A G+LS    +EL +S++  N   ++ IPGI  K 
Sbjct: 61  YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L     Q        +  I        + +SAL+NLGY +     A
Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGTTAPAKQEI------RDDVLSALINLGYKEAVVQKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  K    A    +++ AL+ +
Sbjct: 175 LAEL--KVTEDATVELVLKQALKIL 197


>gi|319903005|ref|YP_004162733.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes
           P 36-108]
 gi|319418036|gb|ADV45147.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes
           P 36-108]
          Length = 200

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYAAV-QGKKECKLYIYEAIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + S       S  +     + +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTDSVATG---SAGDMTSLLMAANTQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+  N A   Q+I+LAL+ +
Sbjct: 177 VLAILKENPN-APVEQVIKLALKRL 200


>gi|218899590|ref|YP_002448001.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842]
 gi|228902949|ref|ZP_04067090.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 4222]
 gi|226725433|sp|B7IIT3|RUVA_BACC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218542616|gb|ACK95010.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842]
 gi|228856733|gb|EEN01252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 4222]
          Length = 205

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGTSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|300858594|ref|YP_003783577.1| holliday junction resolvasome helicase subunit A [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686048|gb|ADK28970.1| Holliday junction resolvasome helicase subunit A [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206306|gb|ADL10648.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
           pseudotuberculosis C231]
 gi|302330863|gb|ADL21057.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276548|gb|ADO26447.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
           pseudotuberculosis I19]
          Length = 203

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV Y +     TLS + + G+   +     +R+D   L
Sbjct: 1   MIVSLRGTVASIGLGSAVIECNGVGYEVLASPSTLSQM-RRGEEFFVLTTMVVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD  RQ F LLQ+V G+G ++A+   S ++A +L ++I  Q++K + +IPG+  ++
Sbjct: 60  YGFASDEARQMFTLLQTVSGLGPKLALAAQSVLSAVDLAQAIANQDAKTLQRIPGVGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +       D            +    +   + AL+ LG+ +  A  A
Sbjct: 120 AERIIVDLKDKVSAF----ITDGGATPASGGSSSATSDVSAQVLEALLGLGFTEKVAEPA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + SVL +  N A  SQ +RLAL  +
Sbjct: 176 LNSVLSESPN-ATTSQALRLALSTL 199


>gi|329926780|ref|ZP_08281188.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5]
 gi|328938980|gb|EGG35348.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5]
          Length = 205

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  +Y+++DVQGV Y ++CP        K     T+F   H+R+D I L
Sbjct: 1   MIDFLRGQVVHLESEYIVLDVQGVGYRVFCPNP--YAFAKTEGTVTVFTHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G RVA+G+L   +   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K     +           ++       S    A   L  LGY   +    
Sbjct: 119 AQRMILDLKDKLEGFGN-ASMMTGLFAIQEPESDDGGSAWSEAREGLKALGYTDSELDKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            + +     +      +++ AL+ +
Sbjct: 178 WLKIKDSGASGESVDVLMKRALQQL 202


>gi|299769122|ref|YP_003731148.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1]
 gi|298699210|gb|ADI89775.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1]
          Length = 199

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S          +  S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSTTTLPQIQFAANSPVAEAEAALQSLGYKPLEAQ-- 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197


>gi|30022496|ref|NP_834127.1| Holliday junction DNA helicase motor protein [Bacillus cereus ATCC
           14579]
 gi|218234847|ref|YP_002369230.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264]
 gi|229048130|ref|ZP_04193701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH676]
 gi|33301596|sp|Q817W3|RUVA_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725434|sp|B7HE55|RUVA_BACC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29898054|gb|AAP11328.1| Holliday junction DNA helicase ruvA [Bacillus cereus ATCC 14579]
 gi|218162804|gb|ACK62796.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264]
 gi|228723233|gb|EEL74607.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH676]
 gi|326942202|gb|AEA18098.1| Holliday junction DNA helicase motor [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 205

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|308070380|ref|YP_003871985.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681]
 gi|305859659|gb|ADM71447.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681]
          Length = 204

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++  L  +YV++DVQGV Y ++CP        K      +++  H+R+D I L
Sbjct: 1   MIDFLRGSVAHLENEYVVLDVQGVGYRVFCPNP--YAFAKTEGPVVIYIHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++Q F  L  V G+G RVA+G+L   T   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFATRDEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   + S+     + +  E        S+   A  AL  LGY   +    
Sbjct: 119 AQRMILDLKDKLDGIGSL--GMATGLFAEPVVEEGEGSYWGEAREALKALGYTDAELDKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K       +++ AL+ +
Sbjct: 177 WSRMKKDAKPDESADILMKRALQLL 201


>gi|262373115|ref|ZP_06066394.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205]
 gi|262313140|gb|EEY94225.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205]
          Length = 201

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   L+ +I   +   + ++PG+  K 
Sbjct: 60  YGFSEAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +LS            +   + + P     A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKALSQSANSTSQTTTSQIQFMSNSP--VAEAEAALQSLGYKPIEAQ-- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 176 -KAVAAVKADYTESADIIRAALKSM 199


>gi|225873651|ref|YP_002755110.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC
           51196]
 gi|254766934|sp|C1F8Z2|RUVA_ACIC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225792770|gb|ACO32860.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC
           51196]
          Length = 198

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +        +++  GV Y +   + T + L   G    L + T + +D I L
Sbjct: 1   MIAHLRGTLLSKQPGQAIVECAGVGYDVAISVPTFTALPAEGAEVRLHIHTQVSEDAIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +++ F  L +V GVG ++A+ +LS ++    V ++  Q+   + +IPG+  K+
Sbjct: 61  FGFLDREEKRLFERLITVSGVGPKLAIKMLSGLSPERTVAALRAQDHASLTRIPGVGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L               A   +    A + +SAL+NLGY +  A  A
Sbjct: 121 AERLVVELKDKLDDL---------IAAAPAAGPVAAGPAAEDVLSALLNLGYQRPAALKA 171

Query: 181 VVSVLKKEKNIADDSQII-RLALRAI 205
           + + ++K+    +D  ++ R AL+ I
Sbjct: 172 IETAVEKDAAAGEDFDLLFRAALKLI 197


>gi|261405408|ref|YP_003241649.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10]
 gi|261281871|gb|ACX63842.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10]
          Length = 205

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  +Y+++DVQGV Y ++CP        K     T+F   H+R+D I L
Sbjct: 1   MIDFLRGQVVHLESEYIVLDVQGVGYRVFCPNP--YAFAKTEGTVTVFTHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G RVA+G+L   +   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K     +           ++       S    A   L  LGY   +    
Sbjct: 119 AQRMILDLKDKLEGFGN-ASMMTGLFAIQEPEADDGGSAWSEAREGLKALGYTDSELDKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            + +     +      +++ AL+ +
Sbjct: 178 WLKIKDSGASGESVDVLMKRALQQL 202


>gi|329113836|ref|ZP_08242607.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter
           pomorum DM001]
 gi|326696846|gb|EGE48516.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter
           pomorum DM001]
          Length = 203

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +IDV GV Y++    RTL+ L    +   L +ET +R+D I L
Sbjct: 1   MIAFLCGLVIQVDLGSCVIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+WF LL SVQGVGA+VA+G+LS ++  ELV +++  +   + + PG+  ++
Sbjct: 61  YGFMESAEREWFRLLTSVQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ KA  +       ++      A      S   +A+ AL  LG+ + +A   
Sbjct: 121 AERILTELRDKAGKMPGGGSGGITI----PAMATPAGSIEADALMALAGLGFRRAEAAPV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+     +A    +IR +L+ ++
Sbjct: 177 VRKVMDTHGAVATLDMVIRDSLKDLA 202


>gi|223044126|ref|ZP_03614165.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14]
 gi|222442520|gb|EEE48626.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14]
          Length = 200

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  L+  +V+++  G+ Y I  P  +      +     +F    +R+D   L
Sbjct: 1   MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNQDVQIFTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F  L  V G+G + A+ +L+  +  E+  +I  +N   + Q PGI  K 
Sbjct: 60  YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK     ++ ++D   + +   +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKV----TITEEDSESLLQVDVNNNEQSQVVKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL K+ +++   + ++L L+ +
Sbjct: 175 VEKVLNKQ-SVSSVDEAVKLGLQTL 198


>gi|83308729|emb|CAJ01639.1| holliday junction dna helicase, ruvA [Methylocapsa acidiphila]
          Length = 204

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 130/206 (63%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK++G ++   ED+V++DV GV YI++C  RTL  L ++G+  +L +ET MR+D +RL
Sbjct: 1   MIGKLRGVVDSFGEDFVILDVNGVGYIVHCSSRTLQRLSRVGELASLAIETQMREDSLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ DR WF LLQSVQGVGA+VA+ V   + A+EL  +I  Q+   IA+  G+  K+
Sbjct: 61  FGFSTEADRDWFKLLQSVQGVGAKVALAVQGILEASELAAAIAFQDKAAIARASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA +       ++     E A   + P+   +AISALV LGYG+ QA  A
Sbjct: 121 AARIVAELKDKAPAAGG---AEVHLQAAEGASGQAAPTAVTDAISALVTLGYGRPQAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +      A  +++IR  L+ +S
Sbjct: 178 VAASVAALGEGAATAELIRRGLKELS 203


>gi|168204868|ref|ZP_02630873.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str.
           JGS1987]
 gi|170663669|gb|EDT16352.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str.
           JGS1987]
          Length = 201

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+GD   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L   I++ + K I + PGI  K 
Sbjct: 61  YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYGIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       +  +   + +               +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKP--DELTSEEGQLIEGINDNSDYSFNINETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDKAL----SIENMIKESLKLL 199


>gi|299067939|emb|CBJ39153.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum CMR15]
          Length = 193

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKIALLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +            +   A++ ++AL+ LGY   +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGAVPGGPVVSDDAVDVLNALLALGYSDKEAAQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|300705140|ref|YP_003746743.1| subunit A of ruvABC holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum CFBP2957]
 gi|299072804|emb|CBJ44159.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum CFBP2957]
          Length = 193

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +           +M   A++ ++AL+ LGY   +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGAAPGGPAMSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|330996011|ref|ZP_08319905.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT
           11841]
 gi|329574008|gb|EGG55586.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT
           11841]
          Length = 200

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I  L     ++D  GV Y +   + T S L +      L+V   +R+D   L
Sbjct: 1   MIEYVKGQIAELTPATAVVDCHGVGYGLNISLNTFSAL-QGKQEAKLYVYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F+LL SV G+G   A  +LS +T  ELV  I   N K++  + GI +K 
Sbjct: 60  YGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K    +SV  +  +                  A++AL  LG+    +   
Sbjct: 120 AQRIIVDLKDKI---ASVEIEGTASPGTSATMATGHSEILEEAVAALTMLGFPPAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +++LK+E   A   ++I+LAL+ +
Sbjct: 177 ALAILKEEPEAA-VERVIKLALKRL 200


>gi|325528762|gb|EGD05824.1| Holliday junction DNA helicase RuvA [Burkholderia sp. TJI49]
          Length = 193

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL + + +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQVVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++ALV LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLGADLGALAGEASPSDHAADILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|262278158|ref|ZP_06055943.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258509|gb|EEY77242.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus
           RUH2202]
          Length = 199

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S          +  S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSTTTLSQIQFAANSPVAEAEAALQSLGYKPLEAQ-- 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V   + +  + + IIR AL+++
Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197


>gi|239817626|ref|YP_002946536.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110]
 gi|259495659|sp|C5CM11|RUVA_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239804203|gb|ACS21270.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110]
          Length = 190

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       V++D  GV Y +  P+ T   L   G+  +L     +R+D   L
Sbjct: 1   MIGKLTGILAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG R A+G+LS ++  EL ++I  Q    + +IPGI  K 
Sbjct: 61  YGFGTAEERAAFRQLIKISGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +      + + ALV LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADIGLPAHAATDAQADILQALVALGYSDKEAALA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK     A  S+ I+LAL+A++
Sbjct: 168 ----LKALPKDATVSEGIKLALKALA 189


>gi|30264491|ref|NP_846868.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames]
 gi|42783552|ref|NP_980799.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987]
 gi|47566611|ref|ZP_00237433.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241]
 gi|47778316|ref|YP_021298.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187311|ref|YP_030563.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Sterne]
 gi|49481508|ref|YP_038471.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141085|ref|YP_085744.1| Holliday junction DNA helicase motor protein [Bacillus cereus E33L]
 gi|65321787|ref|ZP_00394746.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Bacillus anthracis str. A2012]
 gi|118479576|ref|YP_896727.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871987|ref|ZP_02216628.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488]
 gi|167636186|ref|ZP_02394490.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442]
 gi|167640739|ref|ZP_02398999.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193]
 gi|170688710|ref|ZP_02879915.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465]
 gi|170709117|ref|ZP_02899544.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389]
 gi|177653948|ref|ZP_02935989.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174]
 gi|190567070|ref|ZP_03019986.1| Holliday junction DNA helicase RuvA [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034433|ref|ZP_03101842.1| Holliday junction DNA helicase RuvA [Bacillus cereus W]
 gi|196039270|ref|ZP_03106576.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99]
 gi|196044806|ref|ZP_03112040.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108]
 gi|206976012|ref|ZP_03236922.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97]
 gi|217961912|ref|YP_002340482.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187]
 gi|225866402|ref|YP_002751780.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102]
 gi|227817199|ref|YP_002817208.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC
           684]
 gi|229141160|ref|ZP_04269701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST26]
 gi|229602821|ref|YP_002868707.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248]
 gi|254684176|ref|ZP_05148036.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724653|ref|ZP_05186436.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A1055]
 gi|254736523|ref|ZP_05194229.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741561|ref|ZP_05199248.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Kruger
           B]
 gi|254751340|ref|ZP_05203377.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Vollum]
 gi|254757672|ref|ZP_05209699.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Australia 94]
 gi|301055929|ref|YP_003794140.1| holliday junction DNA helicase motor protein [Bacillus anthracis
           CI]
 gi|33301601|sp|Q81LG8|RUVA_BACAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81394735|sp|Q6HDA5|RUVA_BACHK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81409055|sp|Q730B1|RUVA_BACC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81686087|sp|Q634C3|RUVA_BACCZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230517|sp|A0RJ27|RUVA_BACAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725435|sp|B7HQI0|RUVA_BACC7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766941|sp|C3P9A8|RUVA_BACAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766942|sp|C3L6V0|RUVA_BACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766943|sp|C1ESW5|RUVA_BACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|30259149|gb|AAP28354.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames]
 gi|42739481|gb|AAS43407.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987]
 gi|47552021|gb|AAT33773.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47556641|gb|EAL14973.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241]
 gi|49181238|gb|AAT56614.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Sterne]
 gi|49333064|gb|AAT63710.1| holliday junction DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974554|gb|AAU16104.1| Holliday junction DNA helicase, subunit A [Bacillus cereus E33L]
 gi|118418801|gb|ABK87220.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis
           str. Al Hakam]
 gi|164712277|gb|EDR17813.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488]
 gi|167511311|gb|EDR86697.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193]
 gi|167528407|gb|EDR91175.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442]
 gi|170125969|gb|EDS94869.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389]
 gi|170667396|gb|EDT18154.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465]
 gi|172081003|gb|EDT66081.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174]
 gi|190562061|gb|EDV16030.1| Holliday junction DNA helicase RuvA [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992975|gb|EDX56934.1| Holliday junction DNA helicase RuvA [Bacillus cereus W]
 gi|196024294|gb|EDX62967.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108]
 gi|196029897|gb|EDX68498.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99]
 gi|206745764|gb|EDZ57161.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97]
 gi|217066649|gb|ACJ80899.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187]
 gi|225789206|gb|ACO29423.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102]
 gi|227004034|gb|ACP13777.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC
           684]
 gi|228642323|gb|EEK98613.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST26]
 gi|229267229|gb|ACQ48866.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248]
 gi|300378098|gb|ADK07002.1| holliday junction DNA helicase motor protein [Bacillus cereus
           biovar anthracis str. CI]
 gi|324328324|gb|ADY23584.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 205

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|291530842|emb|CBK96427.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum
           70/3]
          Length = 199

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +ID  GV Y       TLS L KIG+   L     +R+D + L
Sbjct: 1   MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +   F +L SV GVG + A+ +LS +T       +   + K +   PGI  K 
Sbjct: 60  FGFYDAAELNCFKMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            S V      + +  +    A+SAL+ LGY   +A +A
Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEAASA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               L      A   ++IR  L+ ++
Sbjct: 176 ----LSGLDPSAPSDELIRAGLKKLA 197


>gi|255281765|ref|ZP_05346320.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM
           14469]
 gi|255267832|gb|EET61037.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM
           14469]
          Length = 202

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +    E+  +I+  G+ + +Y   R    L + G    L+    +R+D I+L
Sbjct: 1   MIAFIKGTLVEAAENVAVIENNGIGFNVYITGRDAGQLVRGGMEVLLYTYMDVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F +L  V G+G + A GVL+ I+A EL  +++  + K I+  PGI  K 
Sbjct: 61  YGFLSKDDLEIFRMLLKVNGIGPKAAQGVLTAISANELRFAVLADDIKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K     +  Q+         A   +       A+ ALV LGY    A  A
Sbjct: 121 AQKLILELKDKFSLQDTFEQK---LAENTAAAAAAPNETQSEAVQALVALGYAGSDALKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V   E        I+R AL+ IS
Sbjct: 178 VKAVHATED--MSTEDILRAALKHIS 201


>gi|254559651|ref|YP_003066746.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens DM4]
 gi|254266929|emb|CAX22728.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens DM4]
          Length = 208

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + +    ++     +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTA--PQPVADAISALVNLGYAQIQASAA 178

Query: 181 VVSVLK---KEKNIADDSQIIRLALRAIS 206
           + + LK   +E    +   +IRL LR ++
Sbjct: 179 IAAALKGLGEEAGAVEAKTLIRLGLRELA 207


>gi|110679369|ref|YP_682376.1| Holliday junction DNA helicase RuvA [Roseobacter denitrificans OCh
           114]
 gi|122972806|sp|Q168A3|RUVA_ROSDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|109455485|gb|ABG31690.1| Holliday junction DNA helicase RuvA, putative [Roseobacter
           denitrificans OCh 114]
          Length = 218

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 71/216 (32%), Positives = 116/216 (53%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV Y+++C  RTL+ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKITGRLEYRASDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  + A  +  +I L +   +    G+  KI
Sbjct: 61  FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----------KEQAHICSMPSFAINAISALVNL 170
           A R++ +LK KA S+  +     +                + +   PS    A+SAL NL
Sbjct: 121 AQRVVLDLKDKAPSVMGMSDTQATVAAQSSDAVIETRAAPSPVVQNPSAQAEALSALSNL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GY    A  AV     +  + A+   +IR AL+ ++
Sbjct: 181 GYAPGDAAAAVAQAAGELPD-AETPDLIRAALKRLA 215


>gi|187927480|ref|YP_001897967.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J]
 gi|309779818|ref|ZP_07674573.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA]
 gi|229560120|sp|B2UFL2|RUVA_RALPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187724370|gb|ACD25535.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J]
 gi|308921395|gb|EFP67037.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA]
          Length = 193

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +           ++   A++ ++AL+ LGY   +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGTVPGGPAVSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|72162493|ref|YP_290150.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX]
 gi|90136068|sp|Q47N42|RUVA_THEFY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71916225|gb|AAZ56127.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX]
          Length = 202

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     +  +IDV GV   ++C    L+ L ++G+  T+     +R+D + L
Sbjct: 1   MIAFLSGRVVSRGAETAVIDVGGVGMTVHCTPAALARL-RVGEEATVATALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R  F  LQ+  GVG R+A+ +LS  T   L  +I  +++  + ++PGI  K 
Sbjct: 60  FGFADDDERDTFERLQTASGVGPRLALAMLSVHTPDALRRAIATEDTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK            +    EQ+   +  ++    +S LVNLG+   +A  A
Sbjct: 120 AQRIVLELKGKLGEPGGD-----TAATPEQSAAAAPRNWRAQVVSGLVNLGWSTREAEAA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V  +     D + ++R ALR +S
Sbjct: 175 ADAVAAEAGEQPDVAALLRSALRRLS 200


>gi|260753286|ref|YP_003226179.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552649|gb|ACV75595.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 213

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D  +IDV GV Y++    R L    +I    T+ +ET +R+D I L
Sbjct: 1   MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S L+R WF LL SVQGVG + A+ +L+ +T   +  +I   +  +I +  GI  KI
Sbjct: 61  FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRSNGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ ELK K  +++           +  +++  A      +F  +A+SAL+NLG+   
Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           +A   V    ++  + A    ++RLALR +S 
Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR-LSS 211


>gi|83749323|ref|ZP_00946320.1| RuvA [Ralstonia solanacearum UW551]
 gi|207742352|ref|YP_002258744.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           IPO1609]
 gi|83724001|gb|EAP71182.1| RuvA [Ralstonia solanacearum UW551]
 gi|206593742|emb|CAQ60669.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           IPO1609]
          Length = 193

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +           +M    ++ ++AL+ LGY   +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGAVPGGPAMSDDTVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|107021766|ref|YP_620093.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU
           1054]
 gi|116688712|ref|YP_834335.1| Holliday junction DNA helicase motor protein [Burkholderia
           cenocepacia HI2424]
 gi|161525864|ref|YP_001580876.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|170732009|ref|YP_001763956.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           MC0-3]
 gi|189349415|ref|YP_001945043.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|221202296|ref|ZP_03575330.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans
           CGD2M]
 gi|221209110|ref|ZP_03582104.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2]
 gi|221214501|ref|ZP_03587472.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1]
 gi|123371880|sp|Q1BZ35|RUVA_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230524|sp|A0K4L5|RUVA_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560009|sp|B1JVV4|RUVA_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560011|sp|A9AH72|RUVA_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|105891955|gb|ABF75120.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU
           1054]
 gi|116646801|gb|ABK07442.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           HI2424]
 gi|160343293|gb|ABX16379.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|169815251|gb|ACA89834.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           MC0-3]
 gi|189333437|dbj|BAG42507.1| holliday junction DNA helicase [Burkholderia multivorans ATCC
           17616]
 gi|221165758|gb|EED98233.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1]
 gi|221171014|gb|EEE03467.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2]
 gi|221177870|gb|EEE10283.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans
           CGD2M]
          Length = 193

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASASDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|19552871|ref|NP_600873.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390542|ref|YP_225944.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum
           ATCC 13032]
 gi|20455261|sp|Q9AE10|RUVA_CORGL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13346823|gb|AAK19839.1|AF331924_4 Holliday junction DNA-helicase RuvA [Corynebacterium glutamicum]
 gi|21324430|dbj|BAB99054.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325880|emb|CAF20043.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 206

 Score =  220 bits (562), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV Y +     TLS L + G+   +     +R+D ++L
Sbjct: 1   MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ +  R+ F +LQ+V G+G R+A+   S ++  E+ ++I   ++K + ++PG+  ++
Sbjct: 60  YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKTLQRVPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  + ++ V  +            +          ALV LG+ + Q+  A
Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEGGEQISLPNANIASEVVVEQVSQALVGLGFSEKQSDDA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VL  + ++ D S  +R AL  +S
Sbjct: 180 VSFVLAADPSL-DTSGALRAALAKLS 204


>gi|168181761|ref|ZP_02616425.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf]
 gi|237796527|ref|YP_002864079.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str.
           657]
 gi|259495636|sp|C3KTD3|RUVA_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|182675197|gb|EDT87158.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf]
 gi|229263209|gb|ACQ54242.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str.
           657]
          Length = 197

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ A+ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +  + + D   +NK      +     + A++AL+ LGY + +A   
Sbjct: 121 AQRIILELKDKI-EIDILEEDDEQTINK-----VTDDKKVLEAVAALITLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S  K         QII+ AL+ +
Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195


>gi|291280036|ref|YP_003496871.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans
           SSM1]
 gi|290754738|dbj|BAI81115.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans
           SSM1]
          Length = 191

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +     ++++++  G+ Y I   + T S L + G    +FV+  +++D I L
Sbjct: 1   MINYINGKLVFKKPEFIVLETFGIGYHINISLNTFSKLPEEGANLKIFVQQIVKEDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + ++++F LL  V  VG ++A+ +LS     EL E I+ +N   +A IPGI  K 
Sbjct: 61  YGFFDEAEKEFFNLLIKVSKVGPKLALSILSGFNVDELKECIVSKNHIKLASIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  ++  V +                     + +SAL+NLGY + +    
Sbjct: 121 AERIVLELKDKLDNVEVVSED-------------GDVQILEDVVSALINLGYKKQECLKV 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + ++   + +      I++ AL+ ++ 
Sbjct: 168 IKNI---DISKLRFEDILKEALKKLTS 191


>gi|74318231|ref|YP_315971.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC
           25259]
 gi|90146182|sp|Q3SGT1|RUVA_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|74057726|gb|AAZ98166.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC
           25259]
          Length = 191

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       VL+DV GVCY I  P+ T   L  IG+   L     +R+D   L
Sbjct: 1   MIGRITGTLAAKQPPQVLVDVNGVCYEIDVPMSTFYNLPGIGEKVALLTHLAIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+++R  F  L  V G+GA+ A+ VLS ++  +L  +I  Q    I ++PGI  K 
Sbjct: 61  YGFGSEVERAAFRELLKVSGIGAKTALSVLSGLSVNDLSAAIAAQEIGRIVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK              V             + +   AL+ LGY + +    
Sbjct: 121 AERLLLELKGK-------------PVFAGALASVPSAGASDDVRQALLALGYNERETAAT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +           + IR ALRA+S
Sbjct: 168 VREL----PAGLAVGEAIRQALRALS 189


>gi|207727946|ref|YP_002256340.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           MolK2]
 gi|206591189|emb|CAQ56801.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           MolK2]
          Length = 193

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +           +M   A++ ++AL+ LGY   +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGAVPGGPAMSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|163942171|ref|YP_001647055.1| Holliday junction DNA helicase motor protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229560002|sp|A9VIP7|RUVA_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163864368|gb|ABY45427.1| Holliday junction DNA helicase RuvA [Bacillus weihenstephanensis
           KBAB4]
          Length = 205

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +              A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|241662010|ref|YP_002980370.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D]
 gi|240864037|gb|ACS61698.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D]
          Length = 193

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +           ++   A++ ++AL+ LGY   +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGAVPGGPAVSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|323692211|ref|ZP_08106454.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14673]
 gi|323503785|gb|EGB19604.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14673]
          Length = 203

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D ++++   V   IY P+  L  L  +G+   ++    +R+D + L
Sbjct: 1   MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  V G+G + A+G+LS ++  +L  +I+  ++K I++ PG+  K 
Sbjct: 61  YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +   +         +E+  +  M      A +ALV LGY   +A+ A
Sbjct: 121 AQRIILDLKEKVSAEEMLAS---VADTEERTSVPLMQEAGREAATALVALGYSNLEASKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V  +     D   ++R +L+ ++
Sbjct: 178 VKNV--QITEDMDAEAVLRASLKYLA 201


>gi|145295781|ref|YP_001138602.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum R]
 gi|166230545|sp|A4QEN4|RUVA_CORGB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|140845701|dbj|BAF54700.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 206

 Score =  220 bits (561), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV Y +     TLS L + G+   +     +R+D ++L
Sbjct: 1   MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ +  R+ F +LQ+V G+G R+A+   S ++  E+ ++I   ++K + ++PG+  ++
Sbjct: 60  YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKALQRVPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  + ++ V  +            +          ALV LG+ + Q+  A
Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEAGEQISLPNANIASEVVVEQVSQALVGLGFSEKQSDDA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VL  + ++ D S  +R AL  +S
Sbjct: 180 VSFVLAADPSL-DTSGALRAALAKLS 204


>gi|198277641|ref|ZP_03210172.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135]
 gi|198269338|gb|EDY93608.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135]
          Length = 198

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +      +V+++  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGELVDATPAWVVVECNGLGYGINVSLNTYSAV-QGKKEVKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFATRQERELFLLLISVSGIGGNTARMILSALSPSELCNVIGSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       V    S    +   + +       A++AL  LG+ Q  +   
Sbjct: 120 AQRIIVELKDKI-----AVTGIESAATVKSVAVAANTEIYEEAVAALTMLGFAQAPSQKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +LK+E + A   ++I+LAL+ +
Sbjct: 175 TAQILKEEPD-APVEKVIKLALKRL 198


>gi|209517513|ref|ZP_03266353.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160]
 gi|209502046|gb|EEA02062.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160]
          Length = 193

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSSGERIVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGAASASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|332878042|ref|ZP_08445772.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684004|gb|EGJ56871.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 200

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I  L     +ID  GV Y +   + T S L +      L+V   +R+D   L
Sbjct: 1   MIEYVKGQIAELTPAIAVIDCHGVGYGLNISLNTFSAL-QGKQEAKLYVYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F+LL SV G+G   A  +LS +T  ELV  I   N K++  + GI +K 
Sbjct: 60  YGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K    +SV  +  +                  A++AL  LG+    +   
Sbjct: 120 AQRIIVDLKDKI---ASVEIEGTAAPGTSATAATGHSEILEEAVAALTMLGFPPAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +++LK+E   A   ++I+LAL+ +
Sbjct: 177 ALAILKEEPEAA-VERVIKLALKRL 200


>gi|148381022|ref|YP_001255563.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931785|ref|YP_001385393.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936604|ref|YP_001388800.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           Hall]
 gi|166230541|sp|A7FY20|RUVA_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230542|sp|A5I6F2|RUVA_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148290506|emb|CAL84634.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC
           3502]
 gi|152927829|gb|ABS33329.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932518|gb|ABS38017.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           Hall]
          Length = 197

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ A+ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +  + + D   +NK      +     + A++ALV LGY + +A   
Sbjct: 121 AQRIILELKDKI-EIDILEEDDEQIINK-----VADDKKVLEAVAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S  K         QII+ AL+ +
Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195


>gi|89099000|ref|ZP_01171880.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL
           B-14911]
 gi|89086404|gb|EAR65525.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL
           B-14911]
          Length = 203

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +  +Y++++  G+ Y I  P    S   K G    +F   ++R+D   L
Sbjct: 1   MFEYIKGTVEFIGPEYIVVENNGLGYQISTP-NPFSYSNKQGGEIQIFTYHYVREDIFAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++  F  L +V G+G + A+ +L+     ++V++I  ++   + + PG+  K 
Sbjct: 60  YGFHSREEKMLFTKLLNVSGIGPKGALAILASGEPAQVVQAIEDEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK          ++   +  +       +    AI AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLQEAIPDFFPNLFNPDAARPAATGSAALLEEAILALRALGYSEKEVKR- 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L+KEK   D  + I+  L+ +
Sbjct: 179 IKPALEKEKLTTD--EYIKKGLQLL 201


>gi|225018933|ref|ZP_03708125.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum
           DSM 5476]
 gi|224948277|gb|EEG29486.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum
           DSM 5476]
          Length = 202

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 13/211 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  I+G +E L         +ID  G+ Y I   + T S L K G    L+   ++R+D
Sbjct: 1   MIYSIQGELELLTPADNHFLAVIDCGGIGYEIRTTMTTASQL-KQGGKAKLYTYLNVRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + LFGF    +R  F +L SV GVG + A+ +LS +T ++    +   +SK + +  GI
Sbjct: 60  AVELFGFFDTEERNCFKMLISVSGVGPKAALSILSNVTPSQFALCVASGDSKSLTRAKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             KIA RI+ ELK K     S  Q      +     + S       A+SALV LGY +  
Sbjct: 120 GAKIAQRIVLELKDKI----SNEQLAGGVTDSGSVALPSGSGNTAEAVSALVVLGYNKTD 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           A  A+ S            ++I+  L+A++ 
Sbjct: 176 AVQALSS----YPADTPVEELIKAGLKALAS 202


>gi|229543702|ref|ZP_04432762.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1]
 gi|229328122|gb|EEN93797.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1]
          Length = 200

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I+ +  DY++++  G+ Y +  P         IG    +F   H+R+D I L
Sbjct: 1   MYEYIKGIIDSVSPDYIVVENGGIGYRLLAP-NPYIFSKSIGQERKIFTYQHVREDLIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G + A+ +L+     ++V++I  +N   + + PG+  K 
Sbjct: 60  YGFETAEERALFQKLLNVSGIGPKGALAILAYGQPQQVVDAIENENESFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L   +  +      E+A   S       A+ AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLQGLVPEMPDEAGV---EKAVPASTNQNLEEAMLALAALGYSEKEIAKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + ++   +    + I+LAL+A+
Sbjct: 177 VPELPEE---VLSADEYIKLALKAM 198


>gi|238026246|ref|YP_002910477.1| Holliday junction DNA helicase RuvA [Burkholderia glumae BGR1]
 gi|237875440|gb|ACR27773.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia
           glumae BGR1]
          Length = 193

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPPTGERVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL + + +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSAFRELLKITGIGARMALAVLSGMSVQELSQVVTIQDAARLQRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +     E A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGELAGQASQSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|163733514|ref|ZP_02140957.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis
           Och 149]
 gi|161393302|gb|EDQ17628.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis
           Och 149]
          Length = 218

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/216 (34%), Positives = 117/216 (54%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV Y+++C  RTL+ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKITGRLEYRTTDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  + A  +  +I L +   +    G+  KI
Sbjct: 61  FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120

Query: 121 ASRIMTELKGKAISL----------SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
           A R++ +LK KA S+          S+     +       A +   PS    A+SAL NL
Sbjct: 121 AQRVVLDLKDKAPSVMGMRDTQAIASADATDTVIETTATPAPVLQNPSAQAEALSALSNL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GYG   A  AV     +    A+   +IR AL+ ++
Sbjct: 181 GYGPGDAAGAVAEAAGEMPE-AETPDLIRAALKRLA 215


>gi|114771193|ref|ZP_01448613.1| Holliday junction DNA helicase motor protein [alpha proteobacterium
           HTCC2255]
 gi|114548118|gb|EAU51005.1| Holliday junction DNA helicase motor protein [alpha proteobacterium
           HTCC2255]
          Length = 225

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G ++    D+VL+DVQGV Y++YC  RTLS L   G    L+ +  +R+D ++L
Sbjct: 1   MIGKITGRVDYRGTDHVLVDVQGVGYMVYCSERTLSGLPSRGGIVALYTDLLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  D++W  LL +VQGVGA+ A+ + S +    + ++I L +   I    GI  KI
Sbjct: 61  FGFTTLADKEWHKLLTTVQGVGAKAALAIASTLGTDGVSKAIALGDVNAIKSAQGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC----------------SMPSFAINAI 164
           A R++TELK KA  + ++  +  + V  +++ +                 S  S   +A+
Sbjct: 121 AQRVITELKDKAPKIMAMGGEGSAVVEADESMVIDVQTPVDTPVKNQNRKSEASAQADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL+NLGY    A  A+  V  +  +     +II+ AL+ ++
Sbjct: 181 SALINLGYAHGDAAGAIAQVTSEIPSSIST-EIIKAALKLLA 221


>gi|77919931|ref|YP_357746.1| Holliday junction DNA helicase RuvA [Pelobacter carbinolicus DSM
           2380]
 gi|90135490|sp|Q3A231|RUVA_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77546014|gb|ABA89576.1| Holliday junction DNA helicase subunit RuvA [Pelobacter
           carbinolicus DSM 2380]
          Length = 197

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V++DV GV Y +  P+ T   L   GD   L V TH+R+D + L
Sbjct: 1   MIALLNGQLIEKTVSQVILDVGGVGYRLLIPLSTYYALPDEGD-VRLRVHTHVREDALLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL++ ++  F LL SV GVG +VA+ +LS + A +L +++   N+K +A +PGI  K 
Sbjct: 60  FGFLTETEKDLFGLLLSVSGVGPKVALNILSHLPAADLQQALSQGNAKHLATVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   + +V                +      +A+SALVNLGY ++ +  A
Sbjct: 120 AERLVLELREKVGPVQAVP-------GNAPLPAETAGDLREDALSALVNLGYKENLSRKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       A    I++ AL+ +
Sbjct: 173 LDGIDTA--PDAPLEDILKQALKLL 195


>gi|322807372|emb|CBZ04946.1| holliday junction DNA helicase RuvA [Clostridium botulinum H04402
           065]
          Length = 197

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ ++ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +  + + D   +NK      +     + A++ALV LGY + +A   
Sbjct: 121 AQRIILELKDKI-EIDVLEENDEQTINK-----VTDDKKVLEAVAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S  K         QII+ AL+ +
Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195


>gi|295084896|emb|CBK66419.1| Holliday junction DNA helicase subunit RuvA [Bacteroides
           xylanisolvens XB1A]
          Length = 200

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++S       S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGSSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|237714009|ref|ZP_04544490.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1]
 gi|262407061|ref|ZP_06083610.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22]
 gi|294644868|ref|ZP_06722608.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a]
 gi|294809795|ref|ZP_06768479.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229445833|gb|EEO51624.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1]
 gi|262355764|gb|EEZ04855.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22]
 gi|292639806|gb|EFF58084.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a]
 gi|294443035|gb|EFG11818.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 200

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++S       S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|187778348|ref|ZP_02994821.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC
           15579]
 gi|187771973|gb|EDU35775.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC
           15579]
          Length = 197

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ ++ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +  V   D   +NK      +     + AI+ALV LGY + +A   
Sbjct: 121 AQRIILELKDKI-EIDIVEDDDEEIINK-----ITDDKKVLEAIAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    K         QII+ AL+ +
Sbjct: 175 INQCDKDN----SLEQIIKEALKYL 195


>gi|189468525|ref|ZP_03017310.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM
           17393]
 gi|189436789|gb|EDV05774.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM
           17393]
          Length = 201

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + ++     +  +    +   +       AI+AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTGTASAGSTIGSLGGMLS--AANAQVQEEAIAALTMLGFAQAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK E + A   Q+I+LAL+ +
Sbjct: 178 VLAILKDEPD-APVEQVIKLALKRL 201


>gi|163796368|ref|ZP_02190329.1| elongation factor P [alpha proteobacterium BAL199]
 gi|159178510|gb|EDP63052.1| elongation factor P [alpha proteobacterium BAL199]
          Length = 208

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 120/208 (57%), Gaps = 1/208 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++   +   +IDV GV Y+++   RTL+ LG+ G   ++ V+TH+R+D I L
Sbjct: 1   MIAKLKGLLDSTGDGMAVIDVGGVGYLVFASARTLTALGEPGSAVSVLVDTHVREDHIHL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F +LQ+VQGVGA+ A+ +LS ++  ++  +I  Q+  ++ +  G+  K+
Sbjct: 61  YGFASAAERSCFRMLQTVQGVGAKHALSILSVLSPEDVFTAIAAQDRVMLTRADGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179
             RI+ ELK K ++++  +  D +   +  A           +A+SAL NLGYG+ +A  
Sbjct: 121 GQRIVNELKDKTVNVALGLGADATGPARAAAVAGQPGDDTVADAVSALSNLGYGRAEAYG 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AV +  +         ++I LAL+ ++ 
Sbjct: 181 AVSTARQALGEGVALDKLITLALKELAA 208


>gi|94677012|ref|YP_588762.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|123081488|sp|Q1LTF2|RUVA_BAUCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94220162|gb|ABF14321.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 196

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       +L+++ G+ Y I  P+   S L  IG    L+    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLLLLEINGIGYEIAIPMNNFSLLPAIGQETILYTHCIVREDTELL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   D   F  L  + GVG ++A+ +L+ ++  + + +I      ++ ++PG+  K 
Sbjct: 61  FGFIKKPDMILFRALIKINGVGPKLALAILAGMSEKQFLSAIEHNEIHMLTKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K K    S  +    +           +    I AI+AL++LGY   +A+  
Sbjct: 121 AERLVIEMKDKLKGTSKSLFSLATIGE-------GLAKTEIEAITALISLGYTHQEASKM 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V  +    A+   +IR ALR
Sbjct: 174 VKKVAIE---GANCETLIRDALR 193


>gi|86359072|ref|YP_470964.1| Holliday junction DNA helicase motor protein [Rhizobium etli CFN
           42]
 gi|123751944|sp|Q2K4J9|RUVA_RHIEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|86283174|gb|ABC92237.1| holliday junction DNA helicase protein [Rhizobium etli CFN 42]
          Length = 204

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 143/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DVQGVCY+ YC  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K +       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGEGADSAKLIRLGLKELA 203


>gi|218128788|ref|ZP_03457592.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697]
 gi|317475376|ref|ZP_07934640.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii
           1_2_48FAA]
 gi|217989016|gb|EEC55332.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697]
 gi|316908404|gb|EFV30094.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii
           1_2_48FAA]
          Length = 198

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPANAIIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F+LL SV G+G   A  +LS ++ +EL+ +I   N+ ++  + GI +K 
Sbjct: 60  YGFIDKQERELFLLLISVSGIGGNTARMILSALSPSELINAISTGNANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K            +      A   +       AI+AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIK-----PGGIAAGTTDISAFTAANAQVQEEAIAALTMLGFAQAPSQKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK++   A   Q+I+LAL+ +
Sbjct: 175 VMAILKEDAG-APVEQVIKLALKRL 198


>gi|224025806|ref|ZP_03644172.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM
           18228]
 gi|224019042|gb|EEF77040.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM
           18228]
          Length = 198

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +     +I+  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGEVIEVVPAQAVIECNGIGYAISISLNTFSAI-QGKKEVKLYIYEAIREDAHIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL +V G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFYTRQERELFLLLITVSGIGGNTARMILSALSPSELCNVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  S        ++ V        +       A++AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKIASTGIDTAAPVTSVI-----ASANTEVYEEAVAALTMLGFAQAPSQKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+E ++    ++I+LAL+ +
Sbjct: 175 VGLLLKEEPDLP-VEKVIKLALKRL 198


>gi|331697370|ref|YP_004333609.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952059|gb|AEA25756.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia
           dioxanivorans CB1190]
          Length = 199

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +++V GV + ++    TL  L + G    L     +R+D + L
Sbjct: 1   MISSVRGEVLSVGLDHAVVEVGGVGFAVFATPATLGGL-RRGQEARLETLLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LLQ+V GVG R+A+  L+ +    L  ++   ++  + +IPG+  K 
Sbjct: 60  YGFADAEERELFVLLQTVSGVGPRLALATLAVLDPQSLRRALADGDTATLTRIPGVGRKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K ++ + V+  D+  +    AH           + ALV LG+    A  A
Sbjct: 120 AERLVVELRDKVVAPAPVLAGDVRPLVTGNAH-------RDQVVEALVGLGFTARPAEAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L  + + A+ + ++R AL  +
Sbjct: 173 VDGILAGDPD-AEPAALLRSALATL 196


>gi|153938510|ref|YP_001392349.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str.
           Langeland]
 gi|168179565|ref|ZP_02614229.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC
           2916]
 gi|170754638|ref|YP_001782706.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str.
           Okra]
 gi|226950500|ref|YP_002805591.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str.
           Kyoto]
 gi|166230543|sp|A7GHT9|RUVA_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560023|sp|B1IMF4|RUVA_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766953|sp|C1FKG2|RUVA_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152934406|gb|ABS39904.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str.
           Langeland]
 gi|169119850|gb|ACA43686.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str.
           Okra]
 gi|182669614|gb|EDT81590.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC
           2916]
 gi|226841819|gb|ACO84485.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str.
           Kyoto]
 gi|295320341|gb|ADG00719.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str.
           230613]
          Length = 197

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ ++ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +  + + D   +NK      +     + A++ALV LGY + +A   
Sbjct: 121 AQRIILELKDKI-EIDILEEDDEQIINK-----VTDDKKVLEAVAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S  K         QII+ AL+ +
Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195


>gi|319651695|ref|ZP_08005822.1| Holliday junction DNA helicase motor protein [Bacillus sp.
           2_A_57_CT2]
 gi|317396762|gb|EFV77473.1| Holliday junction DNA helicase motor protein [Bacillus sp.
           2_A_57_CT2]
          Length = 203

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 94/193 (48%), Gaps = 3/193 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G ++ +  +YV+I+  G+ Y I  P    S   + G    ++   ++R+D + L
Sbjct: 1   MYEFVRGKLDFIGPEYVVIENNGIGYQILTP-NPFSYTPEFGQEVRIYTYHYVREDIMAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+     ++V++I  ++   + + PG+  K 
Sbjct: 60  YGFQTREEKTLFTKLLNVTGIGPKGALAILASGEPEQVVQAIENEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      ++   +K QA           A+ AL  LGY   +    
Sbjct: 120 ARQMILDLKGKLPDIVPDFFPNLFSADKLQAESGPSGDL-EEALLALKALGYSDKE-LKK 177

Query: 181 VVSVLKKEKNIAD 193
           +   L+KEK   D
Sbjct: 178 ITPELRKEKLTTD 190


>gi|319795920|ref|YP_004157560.1| holliday junction DNA helicase ruva [Variovorax paradoxus EPS]
 gi|315598383|gb|ADU39449.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus EPS]
          Length = 190

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       V++D  GV Y +  P+ T   L   G+  +L     +R+D   L
Sbjct: 1   MIGKLTGVLAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG R A+G+LS ++  EL ++I  Q    + +IPGI  K 
Sbjct: 61  YGFGTAEERAAFRQLIKITGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +      + + AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADIGLPTHAASDAQADILQALIALGYSDKEAALA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK     A  S+ I+LAL+A++
Sbjct: 168 ----LKALPKDATVSEGIKLALKALA 189


>gi|114570973|ref|YP_757653.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10]
 gi|122315334|sp|Q0ALX8|RUVA_MARMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114341435|gb|ABI66715.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10]
          Length = 213

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 116/214 (54%), Gaps = 8/214 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L  D +++DV GV Y++    RTLS L +      L +ETH+R+D  +L
Sbjct: 1   MIGMLTGRVAALGADELVLDVSGVGYLVGAGARTLSRL-EPDQDIVLHIETHVREDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL D+DR WF+ LQ++QGVGA+ A  +L  +  +E+  +  L +    A+  G+  K+
Sbjct: 60  YGFLDDIDRAWFVHLQNIQGVGAKAAFAILDTVPVSEIANAAALGDKSTFARAKGVGPKL 119

Query: 121 ASRIMTELKGKAISLS-------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A+RI TELK KA            V   D +      A          +A+SALVNLGY 
Sbjct: 120 ATRIATELKDKAPPTGRSFSIGLPVHSDDGTTGGAPVAPAGGDSLAREDAVSALVNLGYN 179

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           + QA  AV  +L+   + A    +IRL+L+ ++ 
Sbjct: 180 ESQARQAVAKILRDADSEAPLGDVIRLSLKELAA 213


>gi|302550160|ref|ZP_07302502.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467778|gb|EFL30871.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes
           DSM 40736]
          Length = 201

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RMGQPAKLHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSNGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSVLKKEKNIADDS---QIIRLALRAIS 206
           V +V  + + +       Q+++ AL+ ++
Sbjct: 170 VAAVTPQAEAVEGTPQVGQLLKAALQTLN 198


>gi|221141089|ref|ZP_03565582.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751470|gb|ADL65647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 200

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  + S    +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYSFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196


>gi|114327763|ref|YP_744920.1| Holliday junction DNA helicase RuvA [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315937|gb|ABI61997.1| holliday junction DNA helicase ruvA [Granulibacter bethesdensis
           CGDNIH1]
          Length = 204

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 117/206 (56%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++GL ED  LIDV GV Y++Y   RTL+ L +  +   + +ET +R+D I L
Sbjct: 1   MIGRLTGLVDGLEEDRCLIDVNGVGYVVYASSRTLAALPRAPEVARVLIETQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R WF LL +VQGVGA+V + +LS ++A +L+ +++  + + + +  G+  ++
Sbjct: 61  FGFIDTAERDWFRLLTTVQGVGAKVGLNILSALSAGDLISALMAGDQRALTRASGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI++ELK K  ++          +               + +SAL+NLGY + +A  A
Sbjct: 121 AARIVSELKDKVGAM----PSGPMTIGGVGVLSAPAGGVEQDTLSALLNLGYRRPEALAA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V +     A    I+R  LR ++
Sbjct: 177 IRRVREALGEEAGLDAILRQCLRELA 202


>gi|237748980|ref|ZP_04579460.1| RuvA protein [Oxalobacter formigenes OXCC13]
 gi|229380342|gb|EEO30433.1| RuvA protein [Oxalobacter formigenes OXCC13]
          Length = 193

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+D QGV Y I  P+ T   L  +G+  TLF    +R+D   L
Sbjct: 1   MIGRIQGILLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGEKVTLFTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVGAR A+ +LS ++  ++ +++ LQ++  +  IPGI  K 
Sbjct: 61  YGFGSLDERALFRQLIRISGVGARTALALLSGLSVNDMSQAVALQDASRLTSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +                  +  +AL+ LGY + +   A
Sbjct: 121 AER-----------LLLELKGKLETGALSAISSSVQNDAMADIQNALLALGYSEKETILA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V     N    S  I++AL+A+S
Sbjct: 170 IKQV----PNDCSVSDGIKMALKALS 191


>gi|188586412|ref|YP_001917957.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229560108|sp|B2A5L5|RUVA_NATTJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|179351099|gb|ACB85369.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 214

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +  +  DY ++   G+ Y IY P      +   G    L     +R+D + L
Sbjct: 1   MITRIRGEMLEITPDYCVVMAGGLGYKIYIPDNCQEEIPDPGQEIDLHTYLSVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S      F L+ +V G+G ++A+ ++  I  TE   S++      + ++PGI  K 
Sbjct: 61  YGFTSGEQLAVFELIMNVSGIGPKIALALVGTIPPTEFYLSVLNDQVNQLTKVPGIGKKS 120

Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNK-----EQAHICSMPSFAINAISALVNLGYGQ 174
           A RI+ ELK K   ++S    QD+S   K     E+  I +         +AL +LGY  
Sbjct: 121 AQRIILELKEKVKDITSKDAYQDISASEKLDNTGEKLGISTRHKHLDELKAALSSLGYTN 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
            +    V ++  +     D  +++RLAL+ ++ 
Sbjct: 181 REIEKTVDAIQGQITEGQDMEELLRLALQKLNT 213


>gi|163790795|ref|ZP_02185221.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7]
 gi|159873975|gb|EDP68053.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7]
          Length = 204

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y ++          K+    T++V   +R+D I L
Sbjct: 1   MFEYIKGIVTFVSPAYIVLENSGIGYQLFI-ANPFRFSSKLNAEATIYVHQAVREDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q ++ L SV G+G +  + +L+      LV++I  +++  + + PG+  K 
Sbjct: 60  YGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDDHQGLVQAIENEDAAYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   LS + Q + +   +++  + +  S    A+ AL  LGY   +    
Sbjct: 120 ASQIVLDLKGKLADLS-LTQAESTTDYQQELVLSTNYSHVTEAVEALEALGYSAKEIKKI 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K   D    +R ALR +
Sbjct: 179 EPQIRKLNKESTD--AYLREALRLL 201


>gi|296117349|ref|ZP_06835939.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976115|gb|EFG82903.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 204

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +  +  D  +IDV GV Y++    RTLS L +  +   + +ET +R+D I L
Sbjct: 1   MIAQLTGLVGQVEADRCVIDVGGVGYLVLASTRTLSALPQGPEVARVLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R WF LL +VQGVGA+VA+ +LS + A+EL+ +I   +   + +  G+  ++
Sbjct: 61  YGFIDAAERSWFRLLTTVQGVGAKVALAILSTLPASELIAAIASGDKSGLTRAAGVGARL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ K      +       V      +        +A+ AL  LG+ + +A   
Sbjct: 121 AQRIVTELRDKC---DGMPGGGAPGVVMAGVKVTGNGGVMSDALLALSGLGFRRAEAQPV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+ +     D   IIR +L+ ++
Sbjct: 178 VARVMDRLDGGGDLDVIIRESLKELA 203


>gi|172040615|ref|YP_001800329.1| Holliday junction DNA helicase RuvA [Corynebacterium urealyticum
           DSM 7109]
 gi|229560025|sp|B1VDJ7|RUVA_CORU7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171851919|emb|CAQ04895.1| ruvA [Corynebacterium urealyticum DSM 7109]
          Length = 206

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++     DYV+I+  GV Y       TL+ L + G+   +     +R D   L
Sbjct: 1   MISSLRGDVIDKGLDYVVIECGGVGYRCLATGDTLATL-RRGESAFVLTSLVIRDDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F +   R+ F +LQ V GVGAR+AMGV+S +   ++  ++   + K + Q PG+  ++
Sbjct: 60  YAFSTSEQRETFGILQKVSGVGARLAMGVMSVLQPADIARAVEEGDIKTLQQAPGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  +LKGK  +L +   Q       + A   +  +     + ALV LG+ + +A TA
Sbjct: 120 AERMAVDLKGKFPALEATSGQ---ATIGDIAATGNDTALQSQVVEALVGLGFTEAKAATA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +L+++    D S ++R AL+ +S
Sbjct: 177 VKKILEEQNGTTDPSSVLREALQRLS 202


>gi|150026160|ref|YP_001296986.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum
           JIP02/86]
 gi|166230550|sp|A6H1G0|RUVA_FLAPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149772701|emb|CAL44184.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum
           JIP02/86]
          Length = 193

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +       V+ID  GV Y +   + T   L    DF  LF    +++D   L
Sbjct: 1   MIAHIQGKLVEKSPTEVVIDCNGVGYHVNISLHTYGLLPTT-DFVKLFTHLIIKEDSHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL SV G+GA +A  +LS I   +++ +I   +   I  I GI +K 
Sbjct: 60  YGFAEKSEKEIFKLLISVSGIGANIARTMLSSIEPKQIINAIGSGDVGTIQSIKGIGVKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R + +LK K + L  +          +Q  I    +    A+SAL  LG+ +  A   
Sbjct: 120 AQRTIIDLKEKVLKLYDL----------DQVSISQSNTNKDEALSALEVLGFIRKSAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++    + A    II+ AL+ +
Sbjct: 170 VEKIVATMPD-ATVETIIKQALKNL 193


>gi|270296033|ref|ZP_06202233.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20]
 gi|270273437|gb|EFA19299.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20]
          Length = 200

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  + S V     +      A   +       A++AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKIKTGSVVAGNAGTIGTLVSA---ANAQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   Q+I+LAL+ +
Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200


>gi|94264074|ref|ZP_01287873.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta
           proteobacterium MLMS-1]
 gi|93455490|gb|EAT05680.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta
           proteobacterium MLMS-1]
          Length = 212

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D ++++V GV Y ++ P      L   G+   L+++T +R+D   L
Sbjct: 1   MIATLRGQLTQKGADSLIVEVGGVGYEVFFPAGRQDRLPPRGEELFLYIQTVVREDSFCL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++Q+F+LL  V GVG R+AM +L+      L  +I   +   + ++PG+  K 
Sbjct: 61  YGFVDAAEKQFFLLLLGVSGVGPRLAMNILAAAAPDVLGRAIATDDIAGLKKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R+  ELK K     +             EQ           +A SAL+NLGY   +A 
Sbjct: 121 AERLCLELKDKVDFFPAAKPLARPDQAPPAEQGADFGAQPVFQDAYSALLNLGYPPVRAR 180

Query: 179 TAVVSVLKKEKNIADDS----QIIRLALRAIS 206
           +A+  V ++ +          +++R+ LR+++
Sbjct: 181 SALEEVRRQLEQEPAGELPLPELLRITLRSLA 212


>gi|312897339|ref|ZP_07756765.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis
           F0359]
 gi|310621557|gb|EFQ05091.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis
           F0359]
          Length = 199

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG +E ++   V IDV GV Y +Y P+ TL+ L  +G+   L+   ++R+D I L
Sbjct: 1   MIGYVKGTVECIFASSVFIDVHGVGYRVYAPVSTLAHLN-VGEESLLYTYMNVREDAIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   FMLL  V GVG +VA G+LS         ++  ++  ++ ++PGI  K 
Sbjct: 60  YGFLTQDEYDLFMLLIGVNGVGPKVANGILSATGTDSFRAAVANKDIGLLTKMPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K  +  S      S  +++      +        +AL  LGY + +    
Sbjct: 120 AERIVLELQDKVGTPVS------SGESEKTPEPSPIEGIGAEVTAALAGLGYSEREIEPI 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +    K+  +      +++  LRA+  
Sbjct: 174 IAREAKEHDS---VESLLKACLRALGT 197


>gi|326560238|gb|EGE10626.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 7169]
 gi|326566444|gb|EGE16594.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC1]
          Length = 204

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +   L  IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGTQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK      +       +  + A    +        SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPADNSML--IVAEVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|310829219|ref|YP_003961576.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612]
 gi|308740953|gb|ADO38613.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612]
          Length = 203

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKGN E    DY+++D QG+ Y I     T+S L K+     +++    ++D + L
Sbjct: 1   MFEYIKGNYEEQASDYIVVDHQGMGYRINVSANTMSELPKLHKEVKVYIHPAFKEDDVTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  + ++ G+G + AMG+LS+ T  EL+  I+ +++K I++ PGI  K 
Sbjct: 61  YGFSSKEEREIFRTIITISGIGPKAAMGLLSQFTRDELIRYIVNEDAKAISRAPGIGQKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K  + +     +   +     ++    +    A++ L+ LGYG  +A+  
Sbjct: 121 ANRIILELKDKYKNFAFTDSAEPGAIE----NLRETDNLFNEAVNGLLGLGYGYAEASEL 176

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  +++   +I     I++ AL
Sbjct: 177 VEKIIQPGMSI---EDILKNAL 195


>gi|71275803|ref|ZP_00652087.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon]
 gi|71900402|ref|ZP_00682535.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1]
 gi|170730217|ref|YP_001775650.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M12]
 gi|229560142|sp|B0U2E1|RUVA_XYLFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71163381|gb|EAO13099.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon]
 gi|71729834|gb|EAO31932.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1]
 gi|167965010|gb|ACA12020.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           M12]
          Length = 194

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L  +G    LF     + D   L
Sbjct: 1   MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R+ F  LQ V G+G ++A+ VLS ++       I   +   +  IPGI  K 
Sbjct: 61  YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   ++ +                       A  AL  LGY   +A   
Sbjct: 121 AERMLVELRDRAADFNNGISTSGKL----------NLDTVSEAALALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                       D + +I+ AL+A
Sbjct: 171 ARDA---GTESDDVATVIKKALQA 191


>gi|326201641|ref|ZP_08191512.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM
           2782]
 gi|325988241|gb|EGD49066.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM
           2782]
          Length = 201

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E    D ++++  G+ Y I+  + T++ LG+ G    +F   ++R+D   L
Sbjct: 1   MFAYIKGTVEVKNNDSIIVEAGGIGYRIFTALSTINNLGQTGTTVKIFTHYYVREDIAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F +L +V GVG + A+ ++S ++ +    +++ Q++K + +  GI MK+
Sbjct: 61  YGFGTMEELSMFEMLLAVSGVGPKAAISLISTLSPSRFALAVVSQDTKSLTKAQGIGMKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            +     +       S    A+SAL+ LGYG  +A+  
Sbjct: 121 AQRIILELKDKISKEQLTASIPTAG---SENSFAPGDSVLSEAVSALMVLGYGSVEASGI 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + +   +      +I+ AL+++S
Sbjct: 178 ITGIYE---DGMSVEDLIKKALKSLS 200


>gi|15838502|ref|NP_299190.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa 9a5c]
 gi|20455272|sp|Q9PC77|RUVA_XYLFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|9106999|gb|AAF84710.1|AE004010_7 holliday junction binding protein, DNA helicase [Xylella fastidiosa
           9a5c]
          Length = 194

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L  +G    LF     + D   L
Sbjct: 1   MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFYELPNVGYEVNLFTHYTQKDDSAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R+ F  LQ V G+G ++A+ VLS ++       I   +   +  IPGI  K 
Sbjct: 61  YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   ++ +                       A  AL  LGY   +A   
Sbjct: 121 AERMLVELRDRAADFNNGISTSGKL----------NLDTVSEAALALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                       D + +I+ AL+A
Sbjct: 171 ARDA---GTESDDVASVIKKALQA 191


>gi|84516659|ref|ZP_01004018.1| Holliday junction DNA helicase motor protein [Loktanella
           vestfoldensis SKA53]
 gi|84509695|gb|EAQ06153.1| Holliday junction DNA helicase motor protein [Loktanella
           vestfoldensis SKA53]
          Length = 218

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/216 (32%), Positives = 118/216 (54%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV Y++Y   R ++ L + G+   L+ +  +R+D ++L
Sbjct: 1   MIGKIAGRLEYRSTDHVLIDVRGVGYLVYVSDRVMASLPRNGEAVALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  +I L +   +A+  G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKARGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----------INAISALVNL 170
           A R++ ELK KA  + ++     +    E       P+             +A+SAL NL
Sbjct: 121 AQRVIIELKDKAPGVMALGAGLSAATGDEVIEADPAPAPRATPQPASTAQADAMSALANL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GY    A +AVV  L  +   AD   +IR AL+ ++
Sbjct: 181 GYAPGDAASAVVQALGADPQ-ADAGVLIRAALQLLA 215


>gi|257055537|ref|YP_003133369.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora
           viridis DSM 43017]
 gi|256585409|gb|ACU96542.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora
           viridis DSM 43017]
          Length = 199

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  D+ +I+V GV + +     TL  L + G    L+    +R+D + L
Sbjct: 1   MISSIRGEVLAVGLDHAVIEVGGVGFTVQATPTTLGTL-RRGTEARLYTTLMVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     R+ F LLQ+V G+G R+AM  L+ +   +L  ++   +   + Q+PGI  K 
Sbjct: 60  FGFADVESRELFGLLQTVSGIGPRLAMAALAVLEPEKLRRALADGDITTLTQVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K       V   M              +   + ++ALV LG+   QA  A
Sbjct: 120 AERLIIELRDK-------VSAPMGGEPAPDEGTTVGSAVRADVVAALVGLGFSAKQAEQA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +  N  D SQ++R AL  +
Sbjct: 173 VDKVSGEVPN--DTSQVLRAALATL 195


>gi|83816675|ref|YP_444603.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855]
 gi|294506349|ref|YP_003570407.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8]
 gi|123726210|sp|Q2S5C8|RUVA_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83758069|gb|ABC46182.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855]
 gi|294342677|emb|CBH23455.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8]
          Length = 202

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D  L+DV G+ Y ++ P  T   L    +  TL    ++R+D   L
Sbjct: 1   MIDYVSGTLVDKTTDSALVDVNGLGYRVHVPTSTYKRLPDTDEEVTLHTYHYLREDDESL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +  V  VG ++A+  LS +T TEL + ++  +   + QI G+  K 
Sbjct: 61  YGFATKAERTVFETMTGVSRVGPKLALSALSAMTPTELRDHVMEGDKSRLTQISGVGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   L  +          +        +     + AL  LG  +  A  +
Sbjct: 121 ADRLIVELRDRLADLDVLEDTSPLSGGSDARAEARADA-----LEALTELGLSKADAERS 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  VL+    I    +++R AL+A
Sbjct: 176 IRQVLRDNAGIQSADELVRRALKA 199


>gi|257431064|ref|ZP_05607443.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433750|ref|ZP_05610108.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436665|ref|ZP_05612709.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257278267|gb|EEV08909.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281843|gb|EEV11980.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284016|gb|EEV14139.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M876]
          Length = 203

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 4   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 63  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSKRELAK- 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 178 VEKTLNKNK-YDSVDEAVKAGLQ 199


>gi|329961622|ref|ZP_08299681.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057]
 gi|328531614|gb|EGF58448.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057]
          Length = 200

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGGIAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + S+      +          +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTGSAAAGDTGTIGG---LLTAANAQIQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +LK++ + A   Q+I+LAL+ +
Sbjct: 177 VLGILKEDPD-ASVEQVIKLALKRL 200


>gi|282916910|ref|ZP_06324668.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770716|ref|ZP_06343608.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319397|gb|EFB49749.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460863|gb|EFC07953.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus H19]
          Length = 200

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196


>gi|160889167|ref|ZP_02070170.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492]
 gi|156861174|gb|EDO54605.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492]
          Length = 200

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  + S V     +      A   +       AI+AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKIKTGSVVAGNAGTIGTLVSA---ANAQVQEEAIAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   Q+I+LAL+ +
Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200


>gi|49483886|ref|YP_041110.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425766|ref|ZP_05602190.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428426|ref|ZP_05604824.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|282904222|ref|ZP_06312110.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906048|ref|ZP_06313903.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908961|ref|ZP_06316779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911278|ref|ZP_06319080.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914447|ref|ZP_06322233.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919416|ref|ZP_06327151.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924793|ref|ZP_06332459.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958402|ref|ZP_06375853.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503520|ref|ZP_06667367.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510539|ref|ZP_06669244.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537082|ref|ZP_06671762.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428217|ref|ZP_06820849.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590815|ref|ZP_06949453.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus MN8]
 gi|56749557|sp|Q6GG62|RUVA_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49242015|emb|CAG40713.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271460|gb|EEV03606.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275267|gb|EEV06754.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|282313159|gb|EFB43555.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317226|gb|EFB47600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321628|gb|EFB51953.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324973|gb|EFB55283.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327225|gb|EFB57520.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331340|gb|EFB60854.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595840|gb|EFC00804.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790551|gb|EFC29368.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919927|gb|EFD96995.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095186|gb|EFE25451.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466430|gb|EFF08951.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128575|gb|EFG58209.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575701|gb|EFH94417.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312437891|gb|ADQ76962.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195545|gb|EFU25932.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 200

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196


>gi|327475178|gb|AEA77184.1| holliday junction DNA helicase [Bacillus aquimaris]
          Length = 203

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +YV+++  G+ Y +Y                 +F   H+R+D I L
Sbjct: 1   MYEYIKGTISQVSPEYVVVENNGIGYQLY-TANPFVYSKYHNQEIQIFTYQHVREDIIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++  FM L +V G+G + A+ +L+     +++ +I  +N   + + PG+  K 
Sbjct: 60  YGFLSLEEKLLFMKLLNVSGIGPKGALAILASGAPQQVITAIEEENESFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +       +   N E   +         AI AL  LGY   +    
Sbjct: 120 ARQMILDLKGKLQDVVPDYFPSLFNHNDETEALSDKDEAFDEAILALKALGYSDREIKK- 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LK E + AD  +IIR AL+ +
Sbjct: 179 ITPKLKGEGHSAD--EIIRKALQLL 201


>gi|325954455|ref|YP_004238115.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa
           DSM 16922]
 gi|323437073|gb|ADX67537.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa
           DSM 16922]
          Length = 193

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +  ++  Y ++D  GV Y +   + T S L  I +  TL+ +  +R D   L
Sbjct: 1   MITQLRGRLVEVHPSYAVVDCNGVGYWVNISLNTYSSLV-IDEVITLYTQQIIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV GVG   AM +LS ++  E+  +I  +++K++  + GI  K 
Sbjct: 60  YGFNTIEERSIFQKLISVNGVGPASAMMMLSTLSPKEIQTAIYTEDAKLLQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   ++      +   NK            I A+SAL  LG  +  A   
Sbjct: 120 AQRIIIDLKDKLEEINLEDVNSLPHKNK----------TRIEALSALEVLGIPRKVAEKT 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VL K  + A    +++  L+ +
Sbjct: 170 IDQVLDKNAD-ATVETLVKETLKKL 193


>gi|150009258|ref|YP_001304001.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis
           ATCC 8503]
 gi|256841816|ref|ZP_05547322.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13]
 gi|298376955|ref|ZP_06986909.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19]
 gi|301311050|ref|ZP_07216979.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3]
 gi|166230579|sp|A6LFB5|RUVA_PARD8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149937682|gb|ABR44379.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis
           ATCC 8503]
 gi|256736710|gb|EEU50038.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13]
 gi|298265939|gb|EFI07598.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19]
 gi|300831113|gb|EFK61754.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3]
          Length = 196

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T S  G       +++   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R+ F+LL SV GVG   A  +LS +  +ELV+ I  +N   +  + GI +K 
Sbjct: 60  FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   + S+                S  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------VSNGAVTEEAVAALVMLGFQKAASQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK    +A   Q+I+ ALR +
Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196


>gi|253578705|ref|ZP_04855976.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849648|gb|EES77607.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39BFAA]
          Length = 202

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G    + E  V+++  G+ Y IY     LS + ++G+   +     +R+D ++L
Sbjct: 1   MIAFVHGMAVDMTESSVVVEAGGIGYEIYMTGADLSEI-RMGEDVKVHTYFSVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D Q F LL  V GVG + A+GVL+ ITA EL  +I+  + K +++ PGI  K 
Sbjct: 60  YGFRAKDDLQMFKLLLGVNGVGPKAALGVLAGITADELRFAILSDDVKTLSKAPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K     +   + +    +       +      A+ ALV LGY    A  A
Sbjct: 120 AQKLILELKDKMKLEDAFELKLVHEQERAAVGAGEVSDGRQEAVEALVALGYSSADALRA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V     +  D   +++ AL+
Sbjct: 180 VRKVTDVSPD--DVEGLLKAALK 200


>gi|170759601|ref|YP_001788391.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|229560024|sp|B1L0B3|RUVA_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169406590|gb|ACA55001.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 197

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ A+ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +    + D   +NK      +     + A++ALV LGY + +A+  
Sbjct: 121 AQRIILELKDKI-EIDISEEDDEQIINK-----VTDDKKVLEAVAALVTLGYSEKEASKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    K         QII+ AL+ +
Sbjct: 175 INLCDKNN----SLEQIIKEALKHL 195


>gi|255658187|ref|ZP_05403596.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM
           20544]
 gi|260849495|gb|EEX69502.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM
           20544]
          Length = 199

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  LY DY L+DV GV Y ++    T + L ++ +  +LF  T +R+D I L
Sbjct: 1   MIGYLHGRVIALYTDYCLLDVHGVGYRVFLANSTRAKL-RLKEEASLFTYTSVREDAIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+ L  V G+G +VA+G+LS IT   L  +I  + + V+ ++PGI  K 
Sbjct: 60  YGFATEEEYELFLQLIGVSGIGPKVALGILSAITVESLCRAIQNKQASVLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     S  ++ ++  N+ +            A++AL +LGY Q +    
Sbjct: 120 AERLILELKDKVAFADSGEEELLTIENEAEVG----DDAVAEAMAALQSLGYTQAEIAPV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    K          II+ +L+A+S
Sbjct: 176 IRKTAK----YKTTEAIIKESLKALS 197


>gi|229086983|ref|ZP_04219140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-44]
 gi|228696359|gb|EEL49187.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-44]
          Length = 205

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV++D  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + +    
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDVERFDEKKGSSAELDEALEALRALGYAEREVNRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +LK+        Q I+ AL  +
Sbjct: 179 IPELLKE---SLTTDQYIKKALSLL 200


>gi|258424067|ref|ZP_05686949.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635]
 gi|294848671|ref|ZP_06789417.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754]
 gi|257845688|gb|EEV69720.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635]
 gi|294824697|gb|EFG41120.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754]
          Length = 203

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 4   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 63  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 178 VEKTLNKNK-YDSVDEAVKAGLQ 199


>gi|325105978|ref|YP_004275632.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM
           12145]
 gi|324974826|gb|ADY53810.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM
           12145]
          Length = 194

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      Y++++  G+ Y I   + T S L K  + C L+   H+++D   +
Sbjct: 1   MYEYIDGKLVYKCPTYIVLEATGIGYHINISLNTFS-LVKDQEKCKLYTWLHVKEDGHTM 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F+ L SV GVG   A  +LS I+  E+ ++II     +I  I GI  K 
Sbjct: 60  YGFADEGERRLFLHLISVNGVGPNTARMMLSSISPIEIEQAIIKGEVGLIKSIKGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ K               +     I    +    AISALV LG+ ++ A  A
Sbjct: 120 AQRLIIDLQDKLQK----------SGDGTLIAIRQDYTAREEAISALVMLGFAKNNAEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S +KK   I    +II++AL+++
Sbjct: 170 VDSAVKKSDKILSVEEIIKIALKSL 194


>gi|152976839|ref|YP_001376356.1| Holliday junction DNA helicase motor protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|189045741|sp|A7GTA3|RUVA_BACCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152025591|gb|ABS23361.1| Holliday junction DNA helicase RuvA [Bacillus cytotoxicus NVH
           391-98]
          Length = 205

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +Y+++D  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYIVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ + + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIENEDERFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +   V  D+    +         +    A+ AL  LGY + +    
Sbjct: 119 ARQMILDLKGKLADVVPDVFVDLFSDEERFDEKKGSSTELDEALEALRALGYAEREINRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +LK+        Q I+ AL  +
Sbjct: 179 LPELLKE---SLTTDQYIKKALSLL 200


>gi|296113247|ref|YP_003627185.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4]
 gi|295920941|gb|ADG61292.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4]
          Length = 204

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +   L  IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGRVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK      +       +  + A    +        SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPADNSML--IIAEVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|261749358|ref|YP_003257043.1| Holliday junction DNA helicase motor protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497450|gb|ACX83900.1| Holliday junction DNA helicase motor protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 202

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +    +  ++ID  GV Y ++    T S L  + G   +++    ++++Q  
Sbjct: 1   MITHLRGKLIEKNQSSLIIDCNGVGYYLHISSYTYSSLLEEEGKEISIYTYLFIKENQHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF   ++R+ F  L SV G+G   A+ +LS +T  E+ ESI  ++ +V  Q+ GI  K
Sbjct: 61  LYGFFERIERKIFSHLISVNGIGPSSAITILSSLTPHEIKESISREDIEVFNQVKGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K     S + +    VN               A+SAL+ LG+   ++  
Sbjct: 121 TAQRIIIELKDKISISPSTIPKKGKNVNFFDKPPIF---IKKEALSALIVLGFSPKESKK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +  +L K         +I+ +L+ +
Sbjct: 178 VLEEILDKNPEFT-VENLIKESLKKL 202


>gi|255015865|ref|ZP_05287991.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_7]
          Length = 196

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T S  G       +++   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGS-KTTGKIYIYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R+ F+LL SV GVG   A  +LS +  +ELV+ I  +N   +  + GI +K 
Sbjct: 60  FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   + S+                S  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------VSNGAVTEEAVAALVMLGFQKAASQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK    +A   Q+I+ ALR +
Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196


>gi|57650523|ref|YP_186536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751240|ref|YP_416981.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus RF122]
 gi|87160146|ref|YP_494293.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195453|ref|YP_500257.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221756|ref|YP_001332578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509868|ref|YP_001575527.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253733107|ref|ZP_04867272.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258450532|ref|ZP_05698594.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948]
 gi|262048631|ref|ZP_06021514.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|262051292|ref|ZP_06023516.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|282920191|ref|ZP_06327916.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765]
 gi|284024698|ref|ZP_06379096.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 132]
 gi|304380761|ref|ZP_07363429.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|71153735|sp|Q5HFC1|RUVA_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123098028|sp|Q2FXT3|RUVA_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123740965|sp|Q2YT88|RUVA_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123763287|sp|Q2FG85|RUVA_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172048928|sp|A6QHI4|RUVA_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045775|sp|A8Z2H0|RUVA_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57284709|gb|AAW36803.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656771|emb|CAI81200.1| Holliday junction DNA helicase [Staphylococcus aureus RF122]
 gi|87126120|gb|ABD20634.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203011|gb|ABD30821.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374556|dbj|BAF67816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368677|gb|ABX29648.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728863|gb|EES97592.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257861690|gb|EEV84489.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948]
 gi|259160929|gb|EEW45949.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|259163278|gb|EEW47837.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|282594539|gb|EFB99524.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765]
 gi|283470918|emb|CAQ50129.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|298694921|gb|ADI98143.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333315|gb|ADL23508.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|304340698|gb|EFM06630.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315198657|gb|EFU28985.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140471|gb|EFW32325.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144010|gb|EFW35779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323440805|gb|EGA98514.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O11]
 gi|323442846|gb|EGB00471.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O46]
 gi|329314316|gb|AEB88729.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329728425|gb|EGG64862.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733154|gb|EGG69491.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 200

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196


>gi|326390112|ref|ZP_08211673.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993760|gb|EGD52191.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 187

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE + +DYV+ID  G+   ++ P  TL  L   G+   L+   HMR+D  ++
Sbjct: 1   MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS ++    V+++ + + K +   PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                  +       +F+  A+ AL+ LGY + +A  A
Sbjct: 121 AERIILELKDKLPK---------------EIVFEGDNNFSNEALEALLALGYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +           + ++ AL+ +
Sbjct: 166 LADI-----TCDSVEEAVKQALKKL 185


>gi|289578210|ref|YP_003476837.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus
           Ab9]
 gi|297544491|ref|YP_003676793.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527923|gb|ADD02275.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus
           Ab9]
 gi|296842266|gb|ADH60782.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 187

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE + ++YV+ID  G+   ++ P  TL  L   G+   L+   H+R+D  ++
Sbjct: 1   MIEYIRGMIEDIGQNYVIIDFMGIGIKVFVPFSTLKALPTKGNITKLYTYLHVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS +      + +   + K +  +PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVNGVGPKGALSILSVVPIDNFAKVVNTGDYKALTLVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                  +    S  + +  A+ AL+ LGY + +A +A
Sbjct: 121 AERIILELKDKLPK---------------EIVFESDNNLSNEALEALLALGYSKSEAISA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +           + ++ AL+ +
Sbjct: 166 LADI-----TCNSVEETVKQALKKL 185


>gi|253732298|ref|ZP_04866463.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724087|gb|EES92816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 200

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +     ++     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKQLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196


>gi|258543669|ref|YP_003189102.1| Holliday junction DNA helicase RuvA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634747|dbj|BAI00723.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637803|dbj|BAI03772.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640857|dbj|BAI06819.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643912|dbj|BAI09867.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646967|dbj|BAI12915.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650020|dbj|BAI15961.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653010|dbj|BAI18944.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656064|dbj|BAI21991.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 202

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +IDV GV Y++    RTL+ L    +   L +ET +R+D I L
Sbjct: 1   MIAFLCGLVIQVDLGSCVIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+WF LL SVQGVGA+VA+G+LS ++  ELV +++  +   + + PG+  ++
Sbjct: 61  YGFMESAEREWFRLLTSVQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ KA  +               A      S   +A+ AL  LG+ + +A   
Sbjct: 121 AERILTELRDKAGKMPGGG-----GGITIPAMATPAGSIEADALMALAGLGFRRAEAAPV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+      A    +IR +L+ ++
Sbjct: 176 VRKVMDAHGAAATLDLVIRDSLKDLA 201


>gi|167764704|ref|ZP_02436825.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC
           43183]
 gi|167697373|gb|EDS13952.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC
           43183]
          Length = 200

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L      ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPASATIDCNGLGYAVNISLNTYAAI-QGKKSCKLYIYEAIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  +         +      A   +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTCGMASG---AVDITGPAFTAANAQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK++ N A   Q+I+LAL+ +
Sbjct: 177 VTAILKEDAN-APVEQVIKLALKRL 200


>gi|262384145|ref|ZP_06077281.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B]
 gi|262295043|gb|EEY82975.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B]
          Length = 196

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T S  G       +++   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R+ F+LL SV GVG   A  +LS +  +ELV+ I  +N   +  + GI +K 
Sbjct: 60  FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   + S+                S  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------ISNGAVTEEAVAALVMLGFQKAASQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK    +A   Q+I+ ALR +
Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196


>gi|229918406|ref|YP_002887052.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b]
 gi|259495643|sp|C4L522|RUVA_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229469835|gb|ACQ71607.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b]
          Length = 195

 Score =  217 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  +  +Y+ +DV GV Y ++ P        +  +   +F   ++R+DQ  L
Sbjct: 1   MIEFVKGPVAYVCAEYITLDVSGVGYKVHVPNPFFYR--EQDEHVIVFTHHYVREDQQTL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L SV G+G + A+ +++      L+++I  +N K + + PG+  K 
Sbjct: 59  YGFRSRRERELFNKLLSVSGIGPKGALAIVASGDIDALIDAIETENEKYLTKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++  +LKGK   L+             +       S    A  ALV LGY + +    
Sbjct: 119 AKQMALDLKGKLSELAP-------DYVPNEGLFAQGASELDEACEALVALGYSEREIAK- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L     I      I+ AL+ +
Sbjct: 171 VRKALS--GEILTTDAYIKRALQLL 193


>gi|153955759|ref|YP_001396524.1| Holliday junction DNA helicase RuvA [Clostridium kluyveri DSM 555]
 gi|219856126|ref|YP_002473248.1| hypothetical protein CKR_2783 [Clostridium kluyveri NBRC 12016]
 gi|146348617|gb|EDK35153.1| RuvA [Clostridium kluyveri DSM 555]
 gi|219569850|dbj|BAH07834.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 196

 Score =  217 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+ +DY++++  G+ Y I     T++   KI +  TL+++  +R+D I L
Sbjct: 1   MYEYIKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKIDENITLYLQQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ G+GA+ A+ +LS  +   L  +II  + K + + PG+  K 
Sbjct: 61  YGFLTKEEINMFNLLLTINGIGAKAALSLLSISSVNNLKYAIISGDEKNLIRAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      + Q+       +     S     +  + AL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKIKPEEIINQE-------KDHRQVSQEEETMEVLEALIALGYSEKEAGRA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+     N      +I+ AL+ +
Sbjct: 174 VASI----DNNDSIESMIKNALKFL 194


>gi|23099492|ref|NP_692958.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|33301656|sp|Q8EPQ5|RUVA_OCEIH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|22777721|dbj|BAC13993.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 201

 Score =  217 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  L ++ +++DV G+ Y I CP         +     +    H+R+D   L
Sbjct: 1   MIAYIKGTLNSLGDESLIVDVGGIGYEIVCP-NPFVFQDLLNQQIHIQTYHHVREDAQIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F  L SV G+G + A+ +L+ +  +  + ++  ++ K +   PG+  K 
Sbjct: 60  FGFQNRDEKYLFTKLISVSGIGPKGALAILAGVDISGFIAAVENEDDKFLTSFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK  S+ S+  +      K      +       A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGKLTSVFSITDEQ----QKSSVSNVNNNEVYSEAMEALKALGYTDKEV-KQ 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V+  LKK+ +     + IR AL  ++
Sbjct: 175 VLPHLKKDNDALSVDEAIRKALALLA 200


>gi|294628363|ref|ZP_06706923.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14]
 gi|292831696|gb|EFF90045.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14]
          Length = 201

 Score =  217 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +I+V GV   + C   TLS L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGAVAALAPDTAVIEVGGVGMAVQCTPNTLSTL-RIGQPAKLHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +            + V            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLG----------APVGAPAVGAPVTQGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206
           V +V    +         Q+++ AL+ ++
Sbjct: 170 VAAVTPQAEAAGGAPQVGQLLKAALQTLN 198


>gi|239947225|ref|ZP_04698978.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921501|gb|EER21525.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 203

 Score =  217 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKSFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS      + +          P  +   I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISS----GSTIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V S++ +   I+ D Q+I+ AL+
Sbjct: 176 VQSIITQNPEISID-QLIKTALK 197


>gi|326562883|gb|EGE13170.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 46P47B1]
 gi|326563676|gb|EGE13928.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis
           103P14B1]
 gi|326565244|gb|EGE15429.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 12P80B1]
 gi|326570251|gb|EGE20296.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC8]
 gi|326570988|gb|EGE21012.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC7]
 gi|326573284|gb|EGE23252.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis
           101P30B1]
 gi|326576898|gb|EGE26804.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis O35E]
          Length = 204

 Score =  217 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +   L  IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK      +       +  + A    +        SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPADNSML--IIAEVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|253566072|ref|ZP_04843526.1| Holliday junction DNA helicase motor protein [Bacteroides sp.
           3_2_5]
 gi|251945176|gb|EES85614.1| Holliday junction DNA helicase motor protein [Bacteroides sp.
           3_2_5]
          Length = 201

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K    +  +                       AI+AL  LG+    +  A
Sbjct: 120 AQRVIVDLKDKIK--TGAMAATAVGGAAGALLPAMNAEVQEEAIAALTMLGFAATPSQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|53714974|ref|YP_100966.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46]
 gi|60682940|ref|YP_213084.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis NCTC
           9343]
 gi|265766821|ref|ZP_06094650.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16]
 gi|81314002|sp|Q5L9Q7|RUVA_BACFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81381448|sp|Q64PZ9|RUVA_BACFR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52217839|dbj|BAD50432.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46]
 gi|60494374|emb|CAH09170.1| putative holliday junction DNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|263253198|gb|EEZ24674.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16]
 gi|301164406|emb|CBW23964.1| putative holliday junction DNA helicase [Bacteroides fragilis 638R]
          Length = 201

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K    +  +                       AI+AL  LG+    +  A
Sbjct: 120 AQRVIVDLKDKIK--TGAMAATAVGGAAGALLPAMNAEVQEEAIAALTMLGFAAAPSQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|325268803|ref|ZP_08135428.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           multiformis DSM 16608]
 gi|324988775|gb|EGC20733.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           multiformis DSM 16608]
          Length = 246

 Score =  217 bits (554), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  I+G +  L     +++  GV Y +   + T S L +      L+V     T  R D
Sbjct: 42  MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAL-QGKTTVKLYVHEAIMTGGRDD 100

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 101 SYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKGI 160

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 161 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPGTPAVDTAIKDEAVSALTMLGFSPAP 217

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L  + ++    Q+++LAL+ I
Sbjct: 218 SAKVVVSILTDQPDLP-VEQVVKLALKMI 245


>gi|210615646|ref|ZP_03290692.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787]
 gi|210150189|gb|EEA81198.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787]
          Length = 203

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 109/205 (53%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + ED +++DV G+ Y I+ P +++  L  IG+   +    ++R+D ++L
Sbjct: 1   MISYIRGELSAIEEDKIIVDVNGIGYGIFMPGQSMGMLPPIGEEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS+++  +L  +++  ++K I+  PGI  K 
Sbjct: 61  FGFLTRDDLKIFKLVIGVSGIGPKGGLSILSQLSPDDLRFAVLANDAKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K      + +   +      A   +       A+ AL  LGYG  ++  A
Sbjct: 121 AEKLIIELKDKLSVEDILEKNSETVEYAGVADTAN--EVQAEAVQALTALGYGSTESMKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V   E+   +D  +++ AL+ +
Sbjct: 179 VKKVTVTEETTVED--VLKQALKYM 201


>gi|147919262|ref|YP_687002.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           methanogenic archaeon RC-I]
 gi|110622398|emb|CAJ37676.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 201

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDY--VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQ 57
           MI  I+G I+   E    V+I+  G+ Y ++ P   L  L + G+ C L++ T+ R+ D 
Sbjct: 1   MIAHIEGKIDAKSESEEVVVIEAGGIGYEVHVPTPVLDQLPQEGEDCKLYIHTNFREEDG 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  DR +F LL +V G+G +V +G++S  T  E+ E+I+ ++ K + ++ G+ 
Sbjct: 61  TTLYGFATIQDRDFFRLLLTVSGIGPKVGLGIMSGATVEEIAEAIVTEDLKTLTRMNGVG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A R++ ELK K   L  +                   + + +A+ ALV LGY +  A
Sbjct: 121 KKTAQRLVLELKDKVAKLRIMHHAK---------KQVKGDTASADAVDALVALGYSRQVA 171

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203
           + AV             ++++  +LR
Sbjct: 172 SDAVARARDNFTAPPLVNELVVASLR 197


>gi|239978432|ref|ZP_04700956.1| Holliday junction DNA helicase RuvA [Streptomyces albus J1074]
 gi|291450328|ref|ZP_06589718.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074]
 gi|291353277|gb|EFE80179.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074]
          Length = 208

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V G+   + C   TLS L ++G+   L     +R+D + L
Sbjct: 1   MIASVSGTVAALAPDSAVVEVGGIGMAVQCTPDTLSGL-RVGEQARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQSMLAVHHPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +  +     Q     V    A       ++    +ALV LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGAPRGATQAARPAVASGPAP------WSEQLHTALVGLGYAPREADDA 173

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      E       Q++R AL++++
Sbjct: 174 VAAVTPQAEAALAEGGRPAVPQLLRAALQSLN 205


>gi|167037426|ref|YP_001665004.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040093|ref|YP_001663078.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514]
 gi|256752590|ref|ZP_05493444.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914176|ref|ZP_07131492.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561]
 gi|307724588|ref|YP_003904339.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513]
 gi|320115839|ref|YP_004185998.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|229560136|sp|B0K955|RUVA_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560137|sp|B0K0L7|RUVA_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166854333|gb|ABY92742.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514]
 gi|166856260|gb|ABY94668.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748528|gb|EEU61578.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889111|gb|EFK84257.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561]
 gi|307581649|gb|ADN55048.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513]
 gi|319928930|gb|ADV79615.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 187

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G IE + +DYV+ID  G+   ++ P  TL  L   G+   L+    +R+D  ++
Sbjct: 1   MIEYVRGIIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLQVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS ++    V+++   + K +   PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNAGDYKALTVAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                  +       +F+  A+ AL+ LGY + +A  A
Sbjct: 121 AERIILELKDKLPK---------------EIVFEGDNNFSNEALEALLALGYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +             ++ AL+ +
Sbjct: 166 LADI-----TCDSVEDAVKQALKKL 185


>gi|126725530|ref|ZP_01741372.1| Holliday junction DNA helicase motor protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126704734|gb|EBA03825.1| Holliday junction DNA helicase motor protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 221

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G  +    D+VLIDV+GV YI+YC  RTLS L   G   +L+ E  +R+D ++L
Sbjct: 1   MIGKITGIQDMRGTDHVLIDVRGVGYIVYCSDRTLSALPGKGQAVSLYTELLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQG+GA+ +M +L  + A  +  +I L ++  I   PG+  KI
Sbjct: 61  FGFTTLFEKEWHKLLISVQGIGAKASMAILGTLGAEGVGRAITLGDATAIKAAPGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSV-------------VQQDMSCVNKEQAHICSMPSFAINAISAL 167
           A R++ ELK KA ++ ++                D+     ++A          +A+SAL
Sbjct: 121 AQRVVLELKNKAPAIMALGGSLDEATGSVAAEPDDILIEAPQKAKTSPDAVAQSDALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGYG   A  AV  V   E   AD   +IR AL+ ++
Sbjct: 181 TNLGYGPSDAAMAVAEV-AGEMADADAGALIRAALQRLA 218


>gi|304436498|ref|ZP_07396472.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370544|gb|EFM24195.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 199

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG    +  DY L+DV  V Y ++   +T + +        L++ T++R+D I L
Sbjct: 1   MIGFLKGKATHITSDYCLLDVHDVGYRVFISNQTRAHI-SPSAEVMLYIHTNVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F+ L  + G+G +VA G+LS  T  +    +  ++ K I ++PGI  K 
Sbjct: 60  YGFFSREEYDLFLHLIGISGIGPKVAQGILSSATVNDFYRMVQQKDVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   LS V   D+           +  S    A  AL+ LG+   +    
Sbjct: 120 AERILLELKDK---LSDVSVADLP-EGDNNVGTKTENSMIAEATEALLTLGFQDSEIQR- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              V ++  +  +  ++IR AL  +
Sbjct: 175 ---VFRQRHSCQNTEELIRYALAEL 196


>gi|255533713|ref|YP_003094085.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366]
 gi|255346697|gb|ACU06023.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366]
          Length = 194

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      Y++++  GV Y +   + T S L    + C ++   H+++D   L
Sbjct: 1   MFEYIDGKLAFKCPTYIVVEAGGVGYHLNISLNTYSSLANT-ERCKVYTWLHVKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F+ L SV G+G      +LS IT  E+  +I+  +  +I +I GI  K 
Sbjct: 60  YGFADEGERRLFLHLISVSGIGPNTGRMMLSSITPVEIQTAIVNADLALIQRIKGIGAKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     S                    +    A+SAL+ LG+ +  +  A
Sbjct: 120 AQRLVLELQDKLKKEGS----------GSLIAAPLNNTVREEALSALMMLGFAKPASEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +K         Q+I++AL+ +
Sbjct: 170 IDNAVKNGGQDLSVEQMIKIALKNL 194


>gi|212638555|ref|YP_002315075.1| Holliday junction DNA helicase RuvA [Anoxybacillus flavithermus
           WK1]
 gi|226725432|sp|B7GFM6|RUVA_ANOFW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212560035|gb|ACJ33090.1| Holliday junction resolvasome, DNA-binding subunit [Anoxybacillus
           flavithermus WK1]
          Length = 197

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +YV+I+  GV Y I+ P    S          ++   ++R+D + L
Sbjct: 1   MIEFIRGYVDYVCPEYVVIENNGVGYQIFTP-NPFSFQMNKQQQIVVYTYQYVREDVLAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     +LVE+I  +N + + + PG+  K 
Sbjct: 60  YGFHTRQERMLFAKLLQVSGIGPKGALAILAAGQLEQLVEAIEAENDQFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  ++      ++     E+ +  S       AI AL  LGY   +    
Sbjct: 120 ARQMILDLKGKLQAIVPDAFPNLFTEPLEETNALS------EAIEALKALGYADKEIQKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + ++          I+LAL+ +
Sbjct: 174 VPMLRQE---RLSTEGYIKLALQKL 195


>gi|293371094|ref|ZP_06617631.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f]
 gi|292633752|gb|EFF52304.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f]
          Length = 200

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELVELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++        S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|314933806|ref|ZP_07841171.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87]
 gi|313653956|gb|EFS17713.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87]
          Length = 200

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  L+  +V+++  G+ Y I  P  +      +     +F    +R+D   L
Sbjct: 1   MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNRDVQIFTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F  L  V G+G + A+ +L+  +   +  +I  +N   + Q PGI  K 
Sbjct: 60  YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNGVKRAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK     ++ ++D   + K   +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKV----TITEEDSESLLKVDVNNDEQSQVVKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL K+ +++   + +++ L+ +
Sbjct: 175 VEKVLNKQ-SVSSVDEAVKVGLQTL 198


>gi|193213411|ref|YP_001999364.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB
           8327]
 gi|229560016|sp|B3QQG1|RUVA_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193086888|gb|ACF12164.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB
           8327]
          Length = 204

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +     +  +++V G+ Y ++    T S L   G    L+   H+R+D  +L
Sbjct: 1   MFAFLRGELVTASREEAVVEVSGIGYRLHISSGTSSRLPVPGSPVFLYTHYHVREDLQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL + + Q F LL S+ GVG ++A+ VLS ++  E+ E+I+    + +  I G+  K 
Sbjct: 61  FGFLDEEELQLFRLLLSISGVGPKLAIAVLSGLSVGEIQEAIVSNRPETLFGISGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + +    Q   S      + + S      +A++AL  LG+ +  A  A
Sbjct: 121 AARIILELRDKILKI----QPTSSAKAGAPSAVLSATQLIDDAVAALTTLGFPKASAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL+    +    +++R +L A+
Sbjct: 177 VSKVLETTPGL-SVEELVRTSLAAM 200


>gi|160882733|ref|ZP_02063736.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483]
 gi|156111903|gb|EDO13648.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483]
          Length = 200

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++       +S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGVSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|124268420|ref|YP_001022424.1| Holliday junction DNA helicase RuvA [Methylibium petroleiphilum
           PM1]
 gi|166230565|sp|A2SKV0|RUVA_METPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|124261195|gb|ABM96189.1| holliday junction DNA helicase [Methylibium petroleiphilum PM1]
          Length = 192

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+G++ G +       VLIDV GV Y +  P+ +   L  IG+  TL     +R+D   L
Sbjct: 1   MLGRLTGLLAEKSPPQVLIDVGGVGYEVDVPMSSFFNLPAIGEKVTLLTHFVVREDAQVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F +L  + GVG R A+ +LS +T  +L +++  Q++  + ++PGI  K 
Sbjct: 61  FGFLTAPERETFRMLIKISGVGPRTALSILSGLTVGDLAQAVTAQDASRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R           L   ++  +                  + + AL+ LGY + +A  A
Sbjct: 121 AER-----------LLLELKGKLGADLGPAIGGKPASDAQADILQALIALGYSEREAQAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V ++  +       S  I+LAL+A++
Sbjct: 170 VKALPAEVG----VSDGIKLALKALA 191


>gi|149183130|ref|ZP_01861580.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1]
 gi|148849162|gb|EDL63362.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1]
          Length = 202

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G ++ +  +YV+++  G+ Y I+     L    +     T++   H+R+D + L
Sbjct: 1   MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKFE-NQNTTIYTYQHVREDILAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++  F+ L +V G+G + A+ +L+     +++ +I  ++ + + + PG+  K 
Sbjct: 60  YGFLSMEEKMLFIKLLNVSGIGPKGALAILASGAPEQVISAIEGEDERFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      ++    K ++ + +       A  AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLQDVVPDYFPNLFQEGKHES-VSANDELVEEAALALKALGYSEREIKKV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  ++K      ++I+ AL+ +
Sbjct: 179 TPKLSSQDK---TTDELIKDALKLL 200


>gi|307266570|ref|ZP_07548102.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918424|gb|EFN48666.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 187

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE + +DYV+ID  G+   ++ P  TL  L   G+   L+   HMR+D +++
Sbjct: 1   MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGLQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS ++    V+++ + + K +   PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                  +  +    +F+  A+ AL+ LGY + +A  A
Sbjct: 121 AERIILELKDKLPK---------------KIVLEGDNNFSNEALEALLALGYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +           + ++ AL+ +
Sbjct: 166 LADI-----TCDSVEEAVKQALKKL 185


>gi|254487107|ref|ZP_05100312.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101]
 gi|214043976|gb|EEB84614.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101]
          Length = 221

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D+VLIDV+GV Y++YC  RTL+ L  +G+   LF +  +R+D ++L
Sbjct: 1   MIGKITGRIDYRAPDHVLIDVRGVGYLVYCSDRTLAALPGVGEAVALFTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    G+  KI
Sbjct: 61  FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-------------HICSMPSFAINAISAL 167
           A R++ +LK KA  + ++ Q       + +A                   S    A+SAL
Sbjct: 121 AQRVVLDLKDKAPGVMAMTQTLAEAHGEVEAVQVIEAPEAKRRPATAPNHSAQSEALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGYG   A  AV        + AD   +IR AL+ ++
Sbjct: 181 GNLGYGPGDAAGAVAQAAGDMPD-ADTPTLIRAALKLLA 218


>gi|298479676|ref|ZP_06997876.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22]
 gi|298274066|gb|EFI15627.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22]
          Length = 200

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++S      +S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGVSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|256160418|ref|ZP_05458107.1| Holliday junction DNA helicase RuvA [Brucella ceti M490/95/1]
 gi|265998786|ref|ZP_06111343.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M490/95/1]
 gi|262553475|gb|EEZ09244.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M490/95/1]
          Length = 193

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 130/195 (66%), Gaps = 2/195 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDS 195
           V + LK+    AD +
Sbjct: 179 VAAALKETGEGADSA 193


>gi|237720151|ref|ZP_04550632.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4]
 gi|229450703|gb|EEO56494.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4]
          Length = 200

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++ +      S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGTSAAGGASAGLLLQ---PANVEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|15613787|ref|NP_242090.1| Holliday junction DNA helicase RuvA [Bacillus halodurans C-125]
 gi|20140284|sp|Q9KDI9|RUVA_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|10173840|dbj|BAB04943.1| holliday junction DNA helicase [Bacillus halodurans C-125]
          Length = 203

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +   Y +++V GV Y +YCP        +     T++   ++R+D IRL
Sbjct: 1   MIDYLRGTLTDIDHQYAVVEVHGVGYQVYCP-NPYEFEKERDSVITIYTFQYVREDVIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R  F  L +V G+G + A+ +L+      ++++I  ++   + + PG+  K 
Sbjct: 60  YGFRTKEKRSLFEKLLNVSGIGPKGALAILATGQPEHVIQAIEEEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L   +        K              A+ AL  LGY + +    
Sbjct: 120 ARQIILDLKGKVDELHPGLFSQKEEQPKPH-EKNDGNQALDEAMEALKALGYVEKE-LKK 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L++E    D    I+ AL+ +
Sbjct: 178 VKPKLEQETLTTD--AYIKKALQLM 200


>gi|254445801|ref|ZP_05059277.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium
           DG1235]
 gi|198260109|gb|EDY84417.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium
           DG1235]
          Length = 205

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 2/204 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E       +I+  G+ Y+++ P+ T + L   G+   L      R+D   L
Sbjct: 1   MIVSIEGILERATPLTAIINAGGLGYLVHIPVSTAAKLPANGETVKLHTHAVYREDSQSL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S+ +R +F LL   V GVG +VA+G++S++    L+ +I   ++ ++A+ PGI  K
Sbjct: 61  YGFASEDERNFFQLLIEKVSGVGPKVAIGMMSKLELPSLISAIGNADAVLLAKTPGIGKK 120

Query: 120 IASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A R++ ELK K  + + +     +  +           S   +AI AL+ LGY Q  A 
Sbjct: 121 TAERVVIELKDKLGAFAHTSSANPLQGLVPGNTAAAGKVSHEDDAILALLALGYKQSDAA 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202
            +V   ++     A    +I+ AL
Sbjct: 181 KSVGKAVEALGPNASTEALIKAAL 204


>gi|322382934|ref|ZP_08056766.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153054|gb|EFX45512.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 207

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DYV+IDV GV Y ++C         + G+  TLF+  H+R+D   L
Sbjct: 1   MIDYLRGQLAVREMDYVVIDVHGVGYQVFCS-NPFGISAREGEEVTLFIHYHVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F  L  V G+G +VA+G+L+      ++ +I  +N   + ++PGI  K 
Sbjct: 60  FGFTTREEQTLFRKLIEVSGIGPKVALGILTGGRPDAVIAAIQQENVGFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   L + +  +++ +  E A   SM      A  AL+ LGY + +A   
Sbjct: 120 AQRIILDLKDKLGLLPASIVDEVAVLTAE-AERNSMEGCWAEAKQALLALGYTETEADRT 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K       + +LAL+A+
Sbjct: 179 WHLIQKDVKPADPVDTVTKLALKAL 203


>gi|260173998|ref|ZP_05760410.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D2]
 gi|315922266|ref|ZP_07918506.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2]
 gi|313696141|gb|EFS32976.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2]
          Length = 200

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++        S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|163814140|ref|ZP_02205532.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759]
 gi|158450589|gb|EDP27584.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759]
          Length = 208

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +E    + ++++  G+ Y +    + ++ L  +     +F    +R+D+I L
Sbjct: 1   MISYITGTLEYQSGNSIVVECGGIGYSMMISGQFMNRLPAMHSHIKVFTYMSVREDEISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    + + F +L SV GVG + AM +LS +T  EL  +++ ++ K I +  GI  K 
Sbjct: 61  YGFYDRDELEVFKVLLSVNGVGPKAAMSILSALTVNELRLAVVSEDVKAITRANGIGTKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176
           ASRI+ ELK K      +       +N  +     +    I+     ++AL  LGY   +
Sbjct: 121 ASRIILELKDKLRLEDMIDAAYEDAMNGSRVGSGGVAQSDIDTRANVVAALTALGYSGVE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  AV  V  +     D+ Q+++ +L+ I
Sbjct: 181 AGRAVNRV--EGWQDMDEEQLLKASLKNI 207


>gi|304407532|ref|ZP_07389184.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus
           YK9]
 gi|304343483|gb|EFM09325.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus
           YK9]
          Length = 210

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     +Y+++DV+ V Y ++ P        +  +  T+++  H+R+D I+L
Sbjct: 1   MIDFLKGPVAHWETEYIVLDVRDVGYRVFTPNP--YGFARSNEPVTVYIHHHVREDAIQL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F  L  V G+G RVA+GVL+      +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFATREEQTMFRKLLDVSGIGPRVALGVLAGSRPEAIVAAIQQENVTFLTKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA----HICSMPSFAINAISALVNLGYGQDQ 176
           A R++ +LK K  +       D S  +  +        ++      A  AL  LGY   +
Sbjct: 119 AQRMILDLKDKLGNAPLAFGADPSVWDTNEGKGTTGEQAIAGAWPEAREALGALGYTAAE 178

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
              A   +            +++ AL+ +
Sbjct: 179 LDKAFEGLRASITAEESVDSLMKRALQQL 207


>gi|217976203|ref|YP_002360350.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2]
 gi|254767375|sp|B8EJI5|RUVA_METSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|217501579|gb|ACK48988.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2]
          Length = 209

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 122/206 (59%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   EDYV++DV GV Y+++C  RTL  L   G    L ++T MR+D I+L
Sbjct: 1   MIGKLKGLVDSQGEDYVILDVNGVGYVVHCSSRTLQNLPPQGQATALAIDTQMREDSIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +R+WF LLQSVQGVGA+VA+ +   +   E+V +I  Q+    A+  G+  K+
Sbjct: 61  YGFASETEREWFRLLQSVQGVGAKVALAIQGVLRPGEIVTAIAAQDRAAFARASGVGAKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA +L + +       ++             +AIS LVNLG+G+ QA  A
Sbjct: 121 AARILAELKDKAPALGASLHTLAGAGSEGAGVEAPASGAVSDAISVLVNLGFGRSQAAVA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  K   + A    + + AL+ ++
Sbjct: 181 VAASSKALGSGAGAGDLAKRALQELA 206


>gi|238926806|ref|ZP_04658566.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
 gi|238885338|gb|EEQ48976.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
          Length = 199

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG    +  DY L+DV  V Y ++   +T + +        L++ T++R+D I L
Sbjct: 1   MIGFLKGKATHITSDYCLLDVHDVGYRVFISDQTRAHI-SPNAEVMLYIHTNVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F+LL  + G+G +VA G+LS  T  +    +  ++ K I ++PGI  K 
Sbjct: 60  YGFFSREEYDLFLLLIGISGIGPKVAQGILSSATVNDFYCMVQQKDVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   LS V  +D+                   A  AL+ LG+   +    
Sbjct: 120 AERILLELKDK---LSDVSVEDLP-EGDNNVGAEIENGMVAEATEALLTLGFQDSEIQR- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              V +++ +  +  ++IR AL  +
Sbjct: 175 ---VFRQKHSCQNTEELIRYALSEL 196


>gi|221639992|ref|YP_002526254.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides KD131]
 gi|254767384|sp|B9KKV6|RUVA_RHOSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221160773|gb|ACM01753.1| Holliday junction ATP-dependent DNA helicase ruvA [Rhodobacter
           sphaeroides KD131]
          Length = 224

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+Y   RTL+ +  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEAVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------------AHICSMPSFAINAI 164
           A R++ ELK KA +L ++     +    E                 A     PS   +A+
Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPQPGTSSGSRRKTRAPEPPRPSHTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGY    A  AV     +  + AD + +IR AL+ ++
Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221


>gi|317480654|ref|ZP_07939741.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36]
 gi|316903161|gb|EFV25028.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36]
          Length = 200

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  L     +ID  G+ Y +   + T + + +    C L+V   +R+D   L
Sbjct: 1   MIEYIRGGIAELSPATAVIDCNGLGYGVNISLNTYAAI-QGKKECKLYVYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + S       +      A   +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTGSVATGNAGTIGTLVSA---ANVQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   Q+I+LAL+ +
Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200


>gi|298385152|ref|ZP_06994711.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14]
 gi|298262296|gb|EFI05161.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14]
          Length = 201

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++ + V    +          +       A++AL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGATVAGGSASAG--MLLQSASVEVQEEAVAALTMLGFAAAPSQKM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|149915610|ref|ZP_01904136.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           AzwK-3b]
 gi|149810502|gb|EDM70345.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           AzwK-3b]
          Length = 223

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 16/221 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I+    D+VLIDV+GV Y++YC  RTL  L ++G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIDYRASDHVLIDVRGVGYLVYCSDRTLQSLPRVGEHTALYTDLVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    GI  K 
Sbjct: 61  FGFPTLIEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIALGDWNAVKAARGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM---------------PSFAINAIS 165
           A R++ ELK K   L ++     +      +                          A+S
Sbjct: 121 AQRVVNELKDKLPELMAMGTTPTASAPAPPSDAEDAVIEPASLAAAPPPPRSDAQAEALS 180

Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           AL NLGY   +A  AV    + +   A+ + +IR ALR ++
Sbjct: 181 ALTNLGYAPGEAARAVAQAAESDPQ-AETAAMIRAALRLLA 220


>gi|327403822|ref|YP_004344660.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis
           DSM 16823]
 gi|327319330|gb|AEA43822.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis
           DSM 16823]
          Length = 192

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       ++I+  GV Y +   + T S +    +   +  +  +R+D   L
Sbjct: 1   MITHLNGRLIEKNPTNLIIECGGVGYFVKISLNTFSAISST-ESVKVLTQQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV G+G   A+ +LS ++ +E+  +I  ++ + I  I GI  K 
Sbjct: 60  YGFATSEERDIFNFLLSVSGIGPNTAILMLSSMSPSEIANAIQTEDVRSIQAIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +      ++   N          +   +A++AL++LG+ +  A  A
Sbjct: 120 AQRVIIDLKDKMLKVEWTESTNIFAGN---------NTNRFDALTALISLGFDKKNAEKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   +++      +I+ AL+ +
Sbjct: 171 IEKIATGDES---VEDLIKGALKIL 192


>gi|302517991|ref|ZP_07270333.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78]
 gi|318057102|ref|ZP_07975825.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actG]
 gi|333028331|ref|ZP_08456395.1| putative holliday junction DNA helicase RuvA [Streptomyces sp.
           Tu6071]
 gi|302426886|gb|EFK98701.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78]
 gi|332748183|gb|EGJ78624.1| putative holliday junction DNA helicase RuvA [Streptomyces sp.
           Tu6071]
          Length = 206

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V G+   + C   TLS L +IG+   +     +R+D + L
Sbjct: 1   MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+ ++   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +  ++      P +     +ALV LGY   +A  A
Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPPPWTEQLHTALVGLGYQPREAEEA 174

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      +   ++R AL+ ++
Sbjct: 175 VEAVTPQAEAQEGVPEIGPLLRAALQTLN 203


>gi|291286413|ref|YP_003503229.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883573|gb|ADD67273.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM
           12809]
          Length = 192

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 15/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +        +ID   V + +     T   L + G    ++    MR+D + L
Sbjct: 1   MIYSVRGILIEKNPANAVIDTGAVAFEMSISASTYQQLPETGQKAHVYTHFVMREDGVYL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F+LL ++  VG ++A+ +LS +   + + +++     +I+ IPGI  K 
Sbjct: 61  YGFSKMEEKKLFLLLITISKVGPKLALAILSGMDVNKFMNAVMNSEIGLISTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K  S+S     +      E            + +SAL+NLGY +     A
Sbjct: 121 AERIVVELRDKFGSMSVSTGDEPVAGGAE------------DVVSALLNLGYSRADCQKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V  + K +       ++ + AL+ +S 
Sbjct: 169 VNKIYKTDSGF---EELFKGALKELSS 192


>gi|225025938|ref|ZP_03715130.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353]
 gi|224956724|gb|EEG37933.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353]
          Length = 230

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 108/203 (53%), Gaps = 5/203 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  IKG +    +D V+I+  G+ Y I  P R L  +   G+   L    ++R+DQ+ LF
Sbjct: 28  ISYIKGTVAYKGKDSVVIENHGIGYQIKVPSRVLEGVNS-GEEAMLHTYLYVREDQLALF 86

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF S  + + F +L  + G+G + A+ VLS ++  +L  ++  +++K IA+ PGI  K A
Sbjct: 87  GFSSIQELETFQILLGISGIGPKAALSVLSTMSVEDLYYAVFSEDAKSIAKTPGIGPKGA 146

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK K  +L ++     +     Q+      S A + + ALV LGY   +A  AV
Sbjct: 147 KRMIIELKDKL-NLEALESVSGAEEAAPQSSFTEGDSIA-DTVQALVALGYSNGEAYRAV 204

Query: 182 VSVLKKEKNIADDSQIIRLALRA 204
            SV + EK   D  Q+++ AL+ 
Sbjct: 205 HSVPEAEK--LDAEQLLKEALKK 225


>gi|297183449|gb|ADI19581.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           Acidobacteria bacterium HF0770_27F21]
          Length = 192

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +YV++DV GV Y +Y P+ +   +G+IGD   L + TH+R D  +L
Sbjct: 1   MIAALRGLLHEKTPEYVIVDVGGVGYQVYLPLPSFYEIGEIGDEVLLRIHTHVRDDTFKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F  L SV G+G ++A+ +LS +    L+ +I+  +   ++ IPG+  K 
Sbjct: 61  YGFKDLPQQRLFERLISVAGIGPKLAVTILSGMDTDLLIGAIVDSDIVRLSTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K   L  V                       + +SAL NLGY    A  A
Sbjct: 121 AERMALELKEKVDDLGLVSSD------------SGPRGIRQDVLSALENLGYRPRDAERA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V   E        +++  LR ++
Sbjct: 169 LEKV---EDPADQFEALLKQTLRVLA 191


>gi|229013638|ref|ZP_04170769.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides DSM 2048]
 gi|229169164|ref|ZP_04296879.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH621]
 gi|228614392|gb|EEK71502.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH621]
 gi|228747697|gb|EEL97569.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides DSM 2048]
          Length = 212

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 5/204 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+
Sbjct: 9   FEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALY 66

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A
Sbjct: 67  GFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTA 126

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            +++ +LKGK   +      D+    +              A+ AL  LGY + + +  V
Sbjct: 127 RQMILDLKGKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVV 186

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +LK+        Q I+ AL  +
Sbjct: 187 PELLKE---SLTTDQYIKKALSLL 207


>gi|255011116|ref|ZP_05283242.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis 3_1_12]
 gi|313148926|ref|ZP_07811119.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12]
 gi|313137693|gb|EFR55053.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12]
          Length = 201

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFVDKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K    +  +                       A++AL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIK--TGAMAATAVGGAAGALLPAMNAEVQEEAVAALTMLGFAAAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|258405866|ref|YP_003198608.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM
           5692]
 gi|257798093|gb|ACV69030.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM
           5692]
          Length = 204

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG +KG++  + +D+ L+    GV Y +     TL  L + G    LFV T +R+D + 
Sbjct: 1   MIGYLKGDVLRIRKDHCLLATAGGVGYDVQATAGTLGRL-EQGSEAELFVHTVVREDALE 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L  V  +G + ++ +LS  T  EL      +++  + ++ GI  K
Sbjct: 60  LYGFASLAERDVFAELLGVSKLGPKTSLAILSTFTPEELARIAQTEDTAALTRVSGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RIM ELK K  +         +     QA   S  S   +A+S L  LGY +++   
Sbjct: 120 SAKRIMWELKDKLTAWEGE-----AVPGTPQATPASGGSVFGDALSGLCGLGYSEEEVRP 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +L++E ++ D  +IIR  L+ ++
Sbjct: 175 VLSEILEQEPDL-DVGEIIRACLKRLA 200


>gi|282892421|ref|ZP_06300771.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497823|gb|EFB40184.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 200

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +        +I+  G+ Y I+ P  T   L +IG    L+V   +R+    L
Sbjct: 1   MYDYIKGMLISSSPTCAVIETSGIGYKIFIPTSTFGKLAQIGQNVQLYVSFVIREQSQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F +L +V G+G + A+ ++  + +T L  +I  Q+   ++++PG+  K 
Sbjct: 61  YGFFSAEERELFEILLAVSGIGPKTAIALIGHLPSTLLSAAIQGQDITTLSKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K       +    +                 +A++AL +LGY Q  A  A
Sbjct: 121 AERLIVELKDKLK-----IGVHPAAELVTATPFSEKSQTITDALNALTHLGYNQAIAKQA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LK+     D + +I   L+ I
Sbjct: 176 IQKTLKEHSTDIDLATLITSTLKHI 200


>gi|332559001|ref|ZP_08413323.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N]
 gi|332276713|gb|EGJ22028.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N]
          Length = 224

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+Y   RTL+ +  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------------AHICSMPSFAINAI 164
           A R++ ELK KA +L ++     +    E                 A     PS   +A+
Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPDPGTSSGSRRKTRAPEPPRPSHTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGY    A  AV     +  + AD + +IR AL+ ++
Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221


>gi|52081253|ref|YP_080044.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC
           14580]
 gi|52786633|ref|YP_092462.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC
           14580]
 gi|319644780|ref|ZP_07999013.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp.
           BT1B_CT2]
 gi|81384931|sp|Q65GP5|RUVA_BACLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52004464|gb|AAU24406.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52349135|gb|AAU41769.1| RuvA [Bacillus licheniformis ATCC 14580]
 gi|317392589|gb|EFV73383.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp.
           BT1B_CT2]
          Length = 201

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K     T++   ++R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KKNSKETIYTYHYVREDTNAL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  + +V G+G + A+ +L+      ++E+I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKMLFTKMLNVTGIGPKGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK       +  D+   ++E+  I    +    A+ AL  LGY   +    
Sbjct: 118 ARQIILDLKGKLADAVPEIAADLFN-HEEREQIHEAATALEEALEALRALGYSDREIKK- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   LKKE+ ++ D Q ++ AL+ +
Sbjct: 176 VQPHLKKEEALSTD-QYVKKALQKL 199


>gi|218288865|ref|ZP_03493116.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240954|gb|EED08131.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 208

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L   YV +DV+ V Y ++   RT + L  +GD   L+   H+R+D   L
Sbjct: 1   MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAALN-LGDTAFLYTHHHVREDGWAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G ++A+ V+      E+V +I+ ++ + ++++PGI  K+
Sbjct: 60  YGFETSEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDVESLSRLPGIGRKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASR++ EL+ K   L+       S +    +   S  S A +A+SALV LGY   +A  A
Sbjct: 120 ASRLVVELREKLDDLAP------SALRPPSSAPGSQGSTAEDAVSALVALGYRPREAEEA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V +  +++ D    I+ AL  +
Sbjct: 174 VSAVGRGRQSVEDT---IKAALTYL 195


>gi|29347388|ref|NP_810891.1| Holliday junction DNA helicase RuvA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570551|ref|ZP_04847959.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6]
 gi|44888484|sp|Q8A6A7|RUVA_BACTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29339288|gb|AAO77085.1| Holliday junction DNA helicase ruvA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251839500|gb|EES67583.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6]
          Length = 201

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++ + V    +          +       A++AL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGATVAGGSASAG--MLLQSASVEVQEEAVAALTMLGFAAAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|296331680|ref|ZP_06874149.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675361|ref|YP_003867033.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151275|gb|EFG92155.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413605|gb|ADM38724.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 201

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K  +  T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERNQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L       ++++I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   + +++   ++E+    +  +    A+ AL  LGY + +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFN-HEERLEKQTAETALEEALEALRVLGYAEKEIKK- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+  LK++  +  D Q ++ AL+ +
Sbjct: 176 VLPHLKEDTGLTTD-QYVKKALQKL 199


>gi|157693178|ref|YP_001487640.1| Holliday junction DNA helicase RuvA [Bacillus pumilus SAFR-032]
 gi|167012657|sp|A8FFR3|RUVA_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157681936|gb|ABV63080.1| crossover junction endoribonuclease subunit A [Bacillus pumilus
           SAFR-032]
          Length = 201

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   YV+I+  GV Y +Y P   +  + K     T++   ++++D   L
Sbjct: 1   MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINK---QETIYTYHYIKEDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+      ++ +I  ++   + + PG+  K 
Sbjct: 58  YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   +  ++   +++   + +  +    A+ AL  LGYG  +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIGNLFN-HEDHIQVETQQTALDEALEALSVLGYGDREIKK- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+EKN+  D Q ++ AL+ +
Sbjct: 176 VYPLLKEEKNLTTD-QYVKKALQKM 199


>gi|83592424|ref|YP_426176.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170]
 gi|123739581|sp|Q2RVF6|RUVA_RHORT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83575338|gb|ABC21889.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170]
          Length = 212

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++ + ED+ +IDV GV Y+++CP R L+ L   G    L VET +R+D I L
Sbjct: 1   MIAKLKGLVDSVAEDHAVIDVGGVGYLVFCPARVLTRLPSPGQAVALVVETQVREDHISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +R WF LL +VQGVG++VA+ VLS ++A ++ ++I   +   + + PG+  K+
Sbjct: 61  FGFLETAERDWFRLLSTVQGVGSKVALSVLSVLSAGQISQAIAAGDKAALGRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA----HICSMPSFAINAISALVNLGYGQDQ 176
           A+RI +ELK KA++L  +          + A              +A+SALVNLGYG+ +
Sbjct: 121 AARIASELKDKAVALGGMPAPPPRGAGTDAAGEGPPGGPTGDVLGDAVSALVNLGYGRSE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  A                +I LALR +
Sbjct: 181 AVGAASRAA--GLGATTVQGVIGLALRDL 207


>gi|332701178|ref|ZP_08421266.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551327|gb|EGJ48371.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 202

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +    E   +++   GV Y ++ P+  L+ L   G   +   E  +R+D   
Sbjct: 1   MIGYIRGTLLEQTEKSCLVLTAGGVGYELHLPLPALARLPAEGQEVSFHTEQVVREDSQD 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S+  +G +  + +LS+    +L + ++ ++   + ++ GI  K
Sbjct: 61  LYGFETSEERRLFHVLLSIPNLGPKKGLAILSQFHPDDLRQIVLHEDIAALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
              +I+ ELK K  S       D   V ++ A      S   +A++ L NLGY +++A  
Sbjct: 121 TGQQILWELKYKLAS------ADAPAVGRKPAAPGR--SVLQDALAGLTNLGYSEEEARP 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  + + E ++ D +Q++R AL+AI+
Sbjct: 173 VLHKLFEAEPDL-DVAQLLREALKAIA 198


>gi|302391487|ref|YP_003827307.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM
           5501]
 gi|302203564|gb|ADL12242.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM
           5501]
          Length = 201

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +    E  ++IDVQGV Y +  P    + L  IG+   ++  T++R+D+  L
Sbjct: 1   MIAHLTGELVLKEEARIVIDVQGVGYEVMIPTSVQNRLPNIGEDIKVYTHTYVREDRFVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   + + F  L  V  VG +VA+ +LS + A E   ++  ++ +V+ ++ GI  K 
Sbjct: 61  YGFLQLSELELFGKLLKVSKVGPKVAVSILSTLNAREFKLAVAKEDIEVLKEVKGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+KGK              + +E++           A+  L+NLGY   +A  A
Sbjct: 121 AQRLILEMKGKI--------DLDRIMEEEESSQSVDGIEREEAVEGLMNLGYNIQEAREA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V    K     A   ++I+LAL+ 
Sbjct: 173 VTEACKGVDEAAGVEEVIKLALQK 196


>gi|288555342|ref|YP_003427277.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4]
 gi|288546502|gb|ADC50385.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4]
          Length = 205

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +  +   YV++D QG+ Y IYCP        ++ +   ++   H+R+D IRL
Sbjct: 1   MIDYINGVLVDIETRYVVLDHQGLGYQIYCP-NPYQFSKQLDEKVKIYTYQHVREDLIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L +V G+G + A+ +L+      +V +I  ++   + + PG+  K 
Sbjct: 60  FGFESKSERALFEKLLNVSGIGPKGALAILASGQPEHVVRAIEEEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-AHICSMPSFAINAISALVNLGYGQDQATT 179
           A +I+ +LKGK    S  +  + + +  E+   +    +    A+ AL  LGY + +   
Sbjct: 120 ARQIILDLKGKLDEFSPNLFNESTGLVSEKMTKVNKENTELEEALEALRALGYVEKE-LK 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V   L++E    D    I+ AL+ +
Sbjct: 179 KVRPKLEQEDMATD--AYIKKALQLM 202


>gi|85703560|ref|ZP_01034664.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217]
 gi|85672488|gb|EAQ27345.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217]
          Length = 219

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 12/217 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I+    D+VLIDV+GV Y++YC  RTLS L  +G    L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPGVGGMAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I + +   +    GI  K 
Sbjct: 61  FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPEGVGRAIAIGDWHSVTAAKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISALVN 169
           A R++ ELK KA  + ++        +  +            H  + P     A+SAL N
Sbjct: 121 AQRVVNELKDKAPLIMAMGAAPPPAQDAGEVIETGPIQIAPVHAPTDPGAQAEALSALTN 180

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           LGY   +A  AV  V  +    A  + +IR ALR ++
Sbjct: 181 LGYSPGEAAGAVAQVAGEMPEAA-TADLIRAALRRLA 216


>gi|293567841|ref|ZP_06679182.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071]
 gi|291589426|gb|EFF21233.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071]
          Length = 200

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++  G+ Y I           K+     ++V   +R+D   L
Sbjct: 1   MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + A+ +++    + L++++   +   + + PG+  K 
Sbjct: 60  YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   LS      +      +            A+ AL  LGY   +    
Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEANTKDATA-----LSEAMEALSALGYSDREIKRV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K +    D  + +R AL+ +
Sbjct: 175 EKQLKKVDNQTTD--EYLRQALKLM 197


>gi|21232455|ref|NP_638372.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767461|ref|YP_242223.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990567|ref|YP_001902577.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|325921870|ref|ZP_08183684.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC
           19865]
 gi|24212373|sp|Q8P6E5|RUVA_XANCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81306559|sp|Q4UXM0|RUVA_XANC8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560138|sp|B0RPY4|RUVA_XANCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|21114237|gb|AAM42296.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572793|gb|AAY48203.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167732327|emb|CAP50519.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris]
 gi|325547651|gb|EGD18691.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC
           19865]
          Length = 194

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY       A
Sbjct: 121 AERMVVELRDRAADFSSGAPITGQL----------GPDAVSEATVALQQLGYKP---AEA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                +      + + +IR AL+A
Sbjct: 168 ARMAREAGAEGDEVATVIRKALQA 191


>gi|242373942|ref|ZP_04819516.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
 gi|242348296|gb|EES39898.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
          Length = 200

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  L+  +V+++  G+ Y I  P  +      +     ++    +R+D   L
Sbjct: 1   MYAYVKGTLSQLFPTHVVVETAGIGYEIQTP-NSYRFQTYLDKEVQIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F+ L  V G+G + A+ +L+  T  E+ ++I  +N   + Q PGI  K 
Sbjct: 60  YGFISEEEKDMFLSLIKVTGIGPKSALAILAASTPNEVKQAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK     ++ +++   + +   +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKV----TINEENSDTLLQVDLNSTEQSQIVKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL K+ +I    + ++L L+ +
Sbjct: 175 VEKVLNKQ-SITSVDEAVKLGLQTL 198


>gi|308177527|ref|YP_003916933.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter
           arilaitensis Re117]
 gi|307744990|emb|CBT75962.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter
           arilaitensis Re117]
          Length = 205

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +IDV G   ++     TLS L   G   T+F    +R+D + L
Sbjct: 1   MISSLTGTVQAVALNTAVIDVNGFGMLVNATPGTLSALHA-GREATVFTSMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F +L SV G+G R  + +L+  +  E+  +   +++    ++ GI  K 
Sbjct: 60  FGFATAEERDVFEVLISVSGIGPRTGLAILAVHSPEEVRIAANTKDTAAFTKVSGIGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL GK +   + V       N        +  +    I AL  LG+ +  AT  
Sbjct: 120 ASRIVLELNGKLVPTGAPVPSSSGGGN--------VSVWEPQVIEALTGLGWSEKDATAT 171

Query: 181 VVSVLKKEKNI---ADDSQIIRLALRAISC 207
           + S+ K + ++    + ++I+R ALR++S 
Sbjct: 172 LKSLSKADPDVIAAGNVAEILRAALRSMSS 201


>gi|86157379|ref|YP_464164.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|123750528|sp|Q2IPJ6|RUVA_ANADE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85773890|gb|ABC80727.1| Holliday junction DNA helicase subunit RuvA [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 197

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I    +D+ ++DV GV Y+++    +L+ L   G+   L V TH+R+D + L
Sbjct: 1   MIARLAGRIAEKRDDHAIVDVGGVGYLVHVSQLSLASLPPPGEPAALRVYTHVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++ GI  K 
Sbjct: 61  YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K +                 A   +         +AL+NLGY   QA   
Sbjct: 121 AERLVVELKDKLV---------ALARAAGPARAGAEADVLDQLRTALLNLGYRPPQAEG- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+         +++R AL+ +
Sbjct: 171 VAEALRDSAEGRPLDELLREALKRL 195


>gi|28211817|ref|NP_782761.1| Holliday junction DNA helicase RuvA [Clostridium tetani E88]
 gi|44888475|sp|Q891Z7|RUVA_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28204259|gb|AAO36698.1| holliday junction DNA helicase ruvA [Clostridium tetani E88]
          Length = 197

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+++DY+ ++  G+ Y I+    TL    +  +   L+++   R D I L
Sbjct: 1   MYDYIKGIYKGMHKDYITVENNGIGYKIFTSGNTLYETPEKDEEIKLYIQQIPRDDSINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R  F LL ++ GVGA+ ++ +LS  +  +L  SI+ +++ ++ + PGI  K 
Sbjct: 61  YGFFTEEERDMFNLLMTISGVGAKSSLSLLSVTSINKLKYSIVTEDTTLLTRAPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  +   +   D          I +    +  A+ AL++LGY Q ++  A
Sbjct: 121 AERIILELKDKFKNDDIISDIDDLDS------ISNFQLHSAEALEALMSLGYSQKESEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V K+         II+  L+ +
Sbjct: 175 LKNVDKEN----SLEDIIKACLKYL 195


>gi|257870592|ref|ZP_05650245.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2]
 gi|257804756|gb|EEV33578.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2]
          Length = 196

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  ++  Y++++  G+ Y +       +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIIGKVTDIFPAYIVVETHGIGYQVAF-GNPYAFSGKLNQEVKIYLHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   +Q F+ L SV G+G + A+ +++      L+ ++   +   + + PG+  K 
Sbjct: 60  YGFSTLEGKQLFLKLISVSGIGPKSALAIMANEDHAGLITAVENGDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L            +  A +    +    A++AL  LGY + +   A
Sbjct: 120 AQQMILDLKGKVAELVG---------EEPTAPVTVANTALDEAMAALKALGYSEKEIKKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                          + +R AL+ +
Sbjct: 171 --EKYLAPNTTKSTDEYLREALKLM 193


>gi|253681607|ref|ZP_04862404.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str.
           1873]
 gi|253561319|gb|EES90771.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str.
           1873]
          Length = 197

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    L +DY++++   + Y IY    T+S +  I +   +++E  +R+D + +
Sbjct: 1   MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMSNMPNINEEVKIYIEQIVREDFMGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F LL ++ GVG++ A+ +LS    + L +SI+ ++ K++ + PGI  KI
Sbjct: 61  YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVSNLKKSILSEDYKMLTKAPGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K   +     +D+  ++K              ++ AL+ LG+ Q +A  A
Sbjct: 121 AQRITLELKDKIEKIYEDNLEDIDNLSKNSTR------KYDESLEALIALGFSQKEAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V   +       +II+ +LR +
Sbjct: 175 LKDVDMSKG----IEEIIKNSLRYL 195


>gi|328953690|ref|YP_004371024.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454014|gb|AEB09843.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca
           acetoxidans DSM 11109]
          Length = 198

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DY++I V GV Y  + P+ T   L +      L + T ++ D ++L
Sbjct: 1   MIAYLEGELFQKRPDYLIIKVGGVGYQTFIPLSTFYQLPEPPASVALHIHTQVQTDSLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F +  ++Q F+ L S+  VG R+A+ +LS I+  +L +++I  +   +A IPG+  K 
Sbjct: 61  YAFATLDEKQTFIKLLSIPRVGPRLALNILSGISPQDLAQTLIQGDIPRLAAIPGLGRKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM ELKGK    ++ V    S             +   +A+SAL+NLGY +  A   
Sbjct: 121 AERIMVELKGKLRPDATAVSALSSG---------PQGALWEDALSALINLGYSRTLAEEV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +  V   EK +    +I+RL+L  ++ 
Sbjct: 172 LRHVQLHEKPLT-LEEILRLSLSRLAS 197


>gi|160892584|ref|ZP_02073374.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50]
 gi|156865625|gb|EDO59056.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50]
          Length = 200

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +    E+Y++ID  G+ Y I+   + L  +   G    ++   ++R+D++ L
Sbjct: 1   MIAYIAGALVSAGENYIVIDNHGMGYRIFVSGKFLERIPAYGTQIKVYTHMYIREDELTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F +L  + GVG +VAM +L+ +T  EL  ++I +++K I++  G+  K 
Sbjct: 61  YGFHSEEELSVFRILIGISGVGPKVAMAILTALTIQELQLAVISEDAKTISKANGVGTKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K      +     +   +  A      + A +AI ALVNLGY   +A  A
Sbjct: 121 ASRIILELKDKLKMEDMMD----AAYEQSIAQNTQDVNAARDAILALVNLGYSNSEAALA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +   +    D   I++ AL+ +
Sbjct: 177 VKKI--GDIGQMDTEAILKAALKKL 199


>gi|319761299|ref|YP_004125236.1| holliday junction DNA helicase ruva [Alicycliphilus denitrificans
           BC]
 gi|330823173|ref|YP_004386476.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           K601]
 gi|317115860|gb|ADU98348.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           BC]
 gi|329308545|gb|AEB82960.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           K601]
          Length = 190

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G   +L  +  +R+D   L
Sbjct: 1   MIGKLTGALLEKNPPEVLLDCHGVGYEVLVPMSTFYNLPAVGQPVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  V GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFATQQERQAFRELIKVSGVGPRTALSILSGLGVADLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +  +   + + AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADMGGRPHAASADQADILQALLALGYNDKEAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK        S+ I+LAL++++
Sbjct: 168 ----LKGLPADVGVSEGIKLALKSLA 189


>gi|121603423|ref|YP_980752.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans
           CJ2]
 gi|120592392|gb|ABM35831.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans
           CJ2]
          Length = 192

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +  P+ T   L  +G+  +LF    +R+D   L
Sbjct: 3   MIGRLTGQLAEKNPPEILVDCHGVGYEVLVPMSTFYNLPGLGEKISLFTHFIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVG R+A+ VLS ++  EL +++ LQ +  I ++PGI  K 
Sbjct: 63  YGFGSTAERGAFRQLIKITGVGPRMALSVLSGMSVAELAQAVTLQEAGRIVKVPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++          AH+       ++ + ALV LGY    A  A
Sbjct: 123 AER-------------LLLELKGKLGADIGAHVSVSSEAQLDILQALVALGYSDKDAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK        S+ I+LALRA+
Sbjct: 170 ----LKALPPDVGVSEGIKLALRAL 190


>gi|119716613|ref|YP_923578.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp.
           JS614]
 gi|166230576|sp|A1SJA6|RUVA_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119537274|gb|ABL81891.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp.
           JS614]
          Length = 200

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +++V GV   I C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVRGQVAAVTLSSAVLEVGGVGLDIMCTPGTLATL-RVGQQAALPTSMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + ++Q F LLQ+  GVG ++A  +L+ ++  +L  +I   + K + ++PGI  K 
Sbjct: 60  FGFADEDEKQTFELLQTASGVGPKLAQAMLAVLSTDDLRLAITGDDVKTLTRVPGIGQKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ +                       +   +       LV LG+    A  A
Sbjct: 120 AQRIILELRDRI-------GAPTGAGRSAGVPAPAGAVWRDQVHQGLVGLGWPVRDAEKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V  +  ++ D + ++R ALR +S
Sbjct: 173 VAAVAPEAGDVPDVAALLRAALRTLS 198


>gi|326773260|ref|ZP_08232543.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505]
 gi|326636490|gb|EGE37393.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505]
          Length = 217

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 8/212 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L ++G+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM----PSFAINAISALVNLGYGQDQ 176
           A R++ ++  K   ++         V +    + +M    P    + ++ALV LG+ +  
Sbjct: 120 AQRVILDVADKLGPVTGDDLGAAQTVAQSAQGVEAMSDGGPEPHADVVAALVQLGWNEAS 179

Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAI 205
           A  AV SV     +     D + ++R +LR +
Sbjct: 180 AQQAVSSVTADAADGGQEPDMAAVLRASLRWL 211


>gi|311742330|ref|ZP_07716139.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium
           marinum DSM 15272]
 gi|311313958|gb|EFQ83866.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium
           marinum DSM 15272]
          Length = 199

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 18/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D V++DV GV Y+  C   T++ L +IG    L     +R+D + +
Sbjct: 1   MIASLRGTVAAVSLDSVVLDVGGVGYLTRCTPGTIAGL-RIGQEAQLATTLVVREDSMTV 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F L+Q+  GVG +VA+ +L+ +    L ++I   +   +  +PGI  K 
Sbjct: 60  YGFADATERDMFELVQTASGVGPKVALAMLAVLDPDRLRQAIAQADHSTLMSVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +     S             A     P++      AL+ LG+    A  A
Sbjct: 120 AERIVVELKDRVGLAGS-------------AAPTGAPAWREQVHEALLGLGWPARDAERA 166

Query: 181 VVSVLKKEKN----IADDSQIIRLALRAIS 206
           V +V     +     AD S ++R ALR+++
Sbjct: 167 VDNVAADLADDPGAAADVSTLLRDALRSLA 196


>gi|258545752|ref|ZP_05705986.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC
           15826]
 gi|258518997|gb|EEV87856.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC
           15826]
          Length = 197

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       ++++  GV Y +  P+  L  + + G    LFV   +R D   L
Sbjct: 1   MIAYLRGTVLVKQAGQIILETGGVGYELAVPLSVLERVHE-GQEAALFVHHAVRDDGHYL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R WF  L  V G+G ++A+ +LS      L +++  Q+S  + ++PG+  K 
Sbjct: 60  YGFHTLEQRSWFRELIRVSGIGPKIALLILSGFDVEMLAQTVRAQDSAALVKLPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  +   L        +     Q  I    S  ++A  ALV LGY   +A   
Sbjct: 120 AERLLVELNDRVGRLP-------TAGGAGQGSILRPASARLDAEEALVALGYKPAEAAQL 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V     + AD   +IR AL+
Sbjct: 173 IERV---GDDDADTDTLIRRALQ 192


>gi|257878807|ref|ZP_05658460.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,230,933]
 gi|257881445|ref|ZP_05661098.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,502]
 gi|257885716|ref|ZP_05665369.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,501]
 gi|257890666|ref|ZP_05670319.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,410]
 gi|257899427|ref|ZP_05679080.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15]
 gi|258615122|ref|ZP_05712892.1| Holliday junction DNA helicase RuvA [Enterococcus faecium DO]
 gi|261207080|ref|ZP_05921769.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6]
 gi|289565918|ref|ZP_06446358.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF]
 gi|293556856|ref|ZP_06675417.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039]
 gi|293563770|ref|ZP_06678209.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162]
 gi|293570773|ref|ZP_06681823.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980]
 gi|294614616|ref|ZP_06694520.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636]
 gi|294618498|ref|ZP_06698062.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679]
 gi|294621205|ref|ZP_06700390.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317]
 gi|314938831|ref|ZP_07846102.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a04]
 gi|314943637|ref|ZP_07850391.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C]
 gi|314948716|ref|ZP_07852089.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082]
 gi|314952166|ref|ZP_07855184.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A]
 gi|314991860|ref|ZP_07857317.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B]
 gi|314996573|ref|ZP_07861608.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a01]
 gi|257813035|gb|EEV41793.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,230,933]
 gi|257817103|gb|EEV44431.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,502]
 gi|257821572|gb|EEV48702.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,501]
 gi|257827026|gb|EEV53652.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,410]
 gi|257837339|gb|EEV62413.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15]
 gi|260078708|gb|EEW66410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6]
 gi|289162291|gb|EFD10151.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF]
 gi|291592518|gb|EFF24123.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636]
 gi|291595255|gb|EFF26584.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679]
 gi|291599201|gb|EFF30233.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317]
 gi|291600940|gb|EFF31231.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039]
 gi|291604251|gb|EFF33746.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162]
 gi|291609245|gb|EFF38517.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980]
 gi|313589262|gb|EFR68107.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a01]
 gi|313593565|gb|EFR72410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B]
 gi|313595698|gb|EFR74543.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A]
 gi|313597674|gb|EFR76519.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C]
 gi|313641842|gb|EFS06422.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a04]
 gi|313644888|gb|EFS09468.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082]
          Length = 200

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++  G+ Y I           K+     ++V   +R+D   L
Sbjct: 1   MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + A+ +++    + L++++   +   + + PG+  K 
Sbjct: 60  YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   LS      +      +            A+ AL  LGY   +    
Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEANTKDATA-----LSEAMEALSALGYSDREIKRV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  KE +     + +R AL+ +
Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197


>gi|327475176|gb|AEA77183.1| holliday junction DNA helicase [Exiguobacterium sp. EPVM]
          Length = 195

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG++  +  +Y+ +DV GV Y ++ P        +  +   +F   ++R+DQ  L
Sbjct: 1   MIEFVKGSVAYVCAEYITLDVSGVGYKVHVPNPFFYR--EQDEHVIVFTHHYVREDQQTL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  V G+G + A+ +++      L+++I  +N K + + PG+  K 
Sbjct: 59  YGFRSRRERELFNKLLGVNGIGPKGALAIVASGDMDALIDAIETENEKYLTKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++  +LKGK   L+     +     +  + +         A  ALV LGY + + T  
Sbjct: 119 AKQMALDLKGKLSELAPDYVPNTGLFAQGASEL-------DEACEALVALGYSEREITRV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +      I      I+ AL+ +
Sbjct: 172 RKEL---NSEILTTDAYIKRALQLL 193


>gi|299148028|ref|ZP_07041091.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23]
 gi|298514211|gb|EFI38097.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23]
          Length = 200

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   +        S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKIMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|329957833|ref|ZP_08298308.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056]
 gi|328522710|gb|EGF49819.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056]
          Length = 200

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y     + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPASAIIDCNGLGYAANISLNTYAAI-QGKKSCKLYIYEAIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  +   V     +      A   +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTGGMVSG---AADITGPAFTAANAQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK++ N A   Q+I+LAL+ +
Sbjct: 177 VMAILKEDAN-APVEQVIKLALKRL 200


>gi|194017234|ref|ZP_03055846.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061]
 gi|194011102|gb|EDW20672.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061]
          Length = 201

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   YV+I+  GV Y +Y P   +  + K     T++   ++++D   L
Sbjct: 1   MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINK---HETIYTYHYIKEDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+      ++ +I  ++   + + PG+  K 
Sbjct: 58  YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   +  ++   +++   + +  +    A  AL  LGYG  +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIGNLFN-HEDHIQVETQQTALDEAFEALSVLGYGDREIKK- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +LK+EKN+  D Q ++ AL+ +
Sbjct: 176 VLPLLKEEKNLTTD-QYVKKALQKM 199


>gi|257793715|ref|ZP_05642694.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781]
 gi|258410986|ref|ZP_05681266.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763]
 gi|258420213|ref|ZP_05683168.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719]
 gi|258438215|ref|ZP_05689499.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A9299]
 gi|258443678|ref|ZP_05692017.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115]
 gi|258446885|ref|ZP_05695039.1| Holliday junction DNA helicase [Staphylococcus aureus A6300]
 gi|258448799|ref|ZP_05696911.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A6224]
 gi|295406763|ref|ZP_06816568.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819]
 gi|297245654|ref|ZP_06929519.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796]
 gi|257787687|gb|EEV26027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781]
 gi|257840136|gb|EEV64600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763]
 gi|257843924|gb|EEV68318.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719]
 gi|257848259|gb|EEV72250.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A9299]
 gi|257851084|gb|EEV75027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115]
 gi|257854460|gb|EEV77409.1| Holliday junction DNA helicase [Staphylococcus aureus A6300]
 gi|257858077|gb|EEV80966.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A6224]
 gi|294968510|gb|EFG44534.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819]
 gi|297177305|gb|EFH36557.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796]
          Length = 203

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 4   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 63  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 178 VEKTLNKNK-YDSVDEAVKAGLQ 199


>gi|327475180|gb|AEA77185.1| holliday junction DNA helicase [Bacillus sp. 15.4]
          Length = 202

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 100/205 (48%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G ++ +  +YV+++  G+ Y I+     L    +     T++   H+R+D + L
Sbjct: 1   MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKYE-NQEKTIYTYQHVREDILAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++  F+ L +V G+G + A+ +L+     +++ +I  ++ + + + PG+  K 
Sbjct: 60  YGFLSMEEKLLFIKLLNVSGIGPKGALAILASGAPEQVITAIEGEDERFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      ++    K++  + +       A  AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLQDVVPDYFPNLFNEGKQET-VSNNDELIDEAALALKALGYSEREIKRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  + K      ++I+ AL+ +
Sbjct: 179 TPKLSSQGK---TTDELIKDALKLL 200


>gi|325853052|ref|ZP_08171201.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS
           18C-A]
 gi|325484426|gb|EGC87347.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS
           18C-A]
          Length = 222

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  I+G +  L     +++  GV Y +   + T S L +      L+V     T  R D
Sbjct: 18  MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAL-QGKTTVKLYVHEAIMTGGRDD 76

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 77  SYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKGI 136

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 137 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPGTPAVDTAIKDEAVSALTMLGFSPAP 193

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L  + ++    Q+++LAL+ I
Sbjct: 194 SAKVVVSILTDQPDLP-VEQVVKLALKMI 221


>gi|228993160|ref|ZP_04153082.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           pseudomycoides DSM 12442]
 gi|228999210|ref|ZP_04158791.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock3-17]
 gi|229006757|ref|ZP_04164391.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock1-4]
 gi|228754618|gb|EEM04029.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock1-4]
 gi|228760555|gb|EEM09520.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock3-17]
 gi|228766619|gb|EEM15260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           pseudomycoides DSM 12442]
          Length = 212

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 5/204 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              + G +E +  +YV++D  G+ Y I+ P        +      ++   ++R+D + L+
Sbjct: 9   FEYVTGYVEYVGPEYVVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALY 66

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A
Sbjct: 67  GFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTA 126

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  V
Sbjct: 127 RQMILDLKGKLADVVPDAFVDLFSDVERFDEKKGSSAELDEALEALRALGYAEREVSRVV 186

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +LK+        Q I+ AL  +
Sbjct: 187 PELLKE---SLTTDQYIKKALSLL 207


>gi|295094803|emb|CBK83894.1| Holliday junction DNA helicase subunit RuvA [Coprococcus sp.
           ART55/1]
          Length = 200

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E   ++Y++I+  G+ Y +    + +  L  +     +    ++R+D+I L
Sbjct: 1   MISYIRGALEIKGDNYIVIECGGIGYQLMVSGKFMEKLPPVHSEIKVSTYMYIREDEICL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F +L  V GVG +VAM +LS +T  EL  ++I ++ K I++  GI  K 
Sbjct: 61  FGFENADELNVFKILLGVSGVGPKVAMSLLSTLTVNELRLAVISEDVKAISKANGIGAKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K     S+     +  N   A   +      N ISAL  LGY   +A  A
Sbjct: 121 ASRIILELKDKL----SMEDMIDAAYNDSVAVQNAAGDVRTNVISALTALGYSGVEAGRA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D+ Q+++ ALR +
Sbjct: 177 VSRV--DGSADMDEEQLLKAALRFM 199


>gi|73662426|ref|YP_301207.1| Holliday junction DNA helicase RuvA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|90135921|sp|Q49Y80|RUVA_STAS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72494941|dbj|BAE18262.1| Holliday junction DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 200

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L   +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYIKGTLTELNPTHVVVEASGVGYEIQTP-NSYRFQKYMDHEVVVHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  ++  F+ L  V G+G + A+ +L+  +  ++  +I  +N   + + PGI  K 
Sbjct: 60  YGFINQEEKDMFLSLIKVTGIGPKSALAILASSSPNDVKIAIENENDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      +   D S +        +       A+ AL  LGY + + T  
Sbjct: 120 ARQIVLDLKGKV----QINDVDSSQILNTDTQDHANAPIIKEALLALEALGYSKRELTKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+ K+  +  DD+  ++  L+ +
Sbjct: 176 EKSLSKETFDSVDDA--VKRGLQLL 198


>gi|326575817|gb|EGE25740.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis CO72]
          Length = 204

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +   L  IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKG+      +       +  + A    +        SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGQLNEFGEMHPMTAEGLFNQPADNSML--IIAEVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|302384291|ref|YP_003820114.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194919|gb|ADL02491.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 205

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E + LID  GV Y++ C  RTL  L   GD  TL V +   +D   R
Sbjct: 1   MIGRLRGVVAEIEEGHCLIDCAGVGYVVACGARTLGRLPAPGDEATLHVHSQWSEDAGPR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  +R+ F  L  +QGVG + A+ VL  +   EL  ++   +   I +  G+  K
Sbjct: 61  LYGFLARDERRAFTTLLGIQGVGPKAALSVLDVLPPGELAGAVARDDKAAIGRANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELKGK +     V    S           +PS    A+SAL+ LG  +  A  
Sbjct: 121 LALRIVTELKGKPL---GDVSFTPSVAGVHAEVAPPVPSVTGEAVSALLGLGVAEVNARR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV   L +  + A+ S +IR AL+ +
Sbjct: 178 AVDQALIRLGDAAELSAVIRAALQEL 203


>gi|329903093|ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548502|gb|EGF33171.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 192

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +   + T   L  +G+   L  +  +R+D   L
Sbjct: 1   MIGRLSGTLLEKNPPQLLVDCHGVGYEVGVSMSTFYNLPALGEKIVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + GVG R+A+ +LS ++  EL ++I LQ +  + ++PG+  K 
Sbjct: 61  FGFGTAEERNVFRQLIKIAGVGPRMALAILSGMSVAELAQAITLQETGRLTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +  +     +       ++P  + + ++AL+ LGY   +A  A
Sbjct: 121 AER------------LLLELKGKLGADLGIVGGVALPDGSGDILNALLALGYSDKEAMLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V       +  S  I+LAL+A+S
Sbjct: 169 MKQV----PAGSGVSDGIKLALKALS 190


>gi|257068561|ref|YP_003154816.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium
           faecium DSM 4810]
 gi|256559379|gb|ACU85226.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium
           faecium DSM 4810]
          Length = 205

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D ++++V G+ Y++    + LS   + G   TL  E  +R+D + L
Sbjct: 1   MIASLTGRVARIDLDSLVLEVGGIGYLVRTTPQALSA-TRHGAELTLHTELVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F ++QSV G+G R A+ VL+ +   EL  ++  Q++K I + PGI  K+
Sbjct: 60  FGFPQLEEAETFRIVQSVSGIGPRTALAVLAVLEPEELRRAVAEQDAKTITRTPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL GK  + +S+     +   +  A          + + ALV LG+ +  A  A
Sbjct: 120 AGRMLLELGGKLPAPASLSAVPGTPAAEAPATPSGAD---ADVVEALVGLGWAEKAALKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S    +    D ++++R ALR +
Sbjct: 177 VESARADDGAELDSAELLRRALRGL 201


>gi|323344791|ref|ZP_08085015.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           oralis ATCC 33269]
 gi|323094061|gb|EFZ36638.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           oralis ATCC 33269]
          Length = 204

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  I+G +  L     +++V G+ Y +   + T S + +  +   L+V     T  R D
Sbjct: 1   MIEYIRGELAELTPALAVVEVAGIGYALSISLNTYSAI-QGKEKVKLYVHEALVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R+ + LL +V GVGA  A  +LS I+  EL   I   + +++  + GI
Sbjct: 60  SFTLYGFASKQERELYRLLITVSGVGANTARMILSTISPAELCNVIANGDERMLKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K ++     +  +S     +            A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIVNSGIATELHVSS----EPAAMVNNGIKDEAVSALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  AV  +LK + ++    Q+++LAL+ I
Sbjct: 176 SAKAVTEILKADPDLP-VEQVVKLALKQI 203


>gi|15924632|ref|NP_372166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927222|ref|NP_374755.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283321|ref|NP_646409.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486475|ref|YP_043696.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148268122|ref|YP_001247065.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394190|ref|YP_001316865.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979960|ref|YP_001442219.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253317207|ref|ZP_04840420.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006427|ref|ZP_05145028.2| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258453755|ref|ZP_05701730.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937]
 gi|269203267|ref|YP_003282536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893146|ref|ZP_06301380.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117]
 gi|282928277|ref|ZP_06335882.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102]
 gi|296275927|ref|ZP_06858434.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207637|ref|ZP_06924072.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911720|ref|ZP_07129163.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|54039574|sp|P66749|RUVA_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54039575|sp|P66750|RUVA_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042203|sp|P66748|RUVA_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56749510|sp|Q6G8S7|RUVA_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200268|sp|A7X358|RUVA_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045773|sp|A6U2B0|RUVA_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045774|sp|A5ITG6|RUVA_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13701440|dbj|BAB42734.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247414|dbj|BAB57804.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204761|dbj|BAB95457.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244918|emb|CAG43379.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147741191|gb|ABQ49489.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946642|gb|ABR52578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722095|dbj|BAF78512.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257864075|gb|EEV86828.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937]
 gi|262075557|gb|ACY11530.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590084|gb|EFB95166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102]
 gi|282764464|gb|EFC04590.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117]
 gi|285817324|gb|ADC37811.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus
           04-02981]
 gi|296887654|gb|EFH26552.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300885966|gb|EFK81168.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|312830028|emb|CBX34870.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129927|gb|EFT85917.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727620|gb|EGG64076.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 200

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196


>gi|227550815|ref|ZP_03980864.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330]
 gi|257887929|ref|ZP_05667582.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,141,733]
 gi|257893270|ref|ZP_05672923.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,408]
 gi|257896453|ref|ZP_05676106.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12]
 gi|293377530|ref|ZP_06623725.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1]
 gi|227180052|gb|EEI61024.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330]
 gi|257823983|gb|EEV50915.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,141,733]
 gi|257829649|gb|EEV56256.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,408]
 gi|257833018|gb|EEV59439.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12]
 gi|292643845|gb|EFF61960.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1]
          Length = 200

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++  G+ Y I           K+     ++V   +R+D   L
Sbjct: 1   MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + A+ +++    + L++++   +   + + PG+  K 
Sbjct: 60  YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   LS      +              +    A+ AL  LGY   +    
Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLF-----DEATTKDATALSEAMEALSALGYSDREIKRV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  KE +     + +R AL+ +
Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197


>gi|166712990|ref|ZP_02244197.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
 gi|289661899|ref|ZP_06483480.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669612|ref|ZP_06490687.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 194

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY       A
Sbjct: 121 AERMVVELRDRAADFSSGAPITGQL----------GPDAISEATVALQQLGYKP---AEA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                +      + + +IR AL+A
Sbjct: 168 ARMAREAGAEGDEVATVIRKALQA 191


>gi|284032305|ref|YP_003382236.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836]
 gi|283811598|gb|ADB33437.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836]
          Length = 199

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D  +I+V GV   ++C   TL+ L + G    +     +R+D + L
Sbjct: 1   MIAFVRGPVAAIGVDSAVIEVGGVGMQVFCHPGTLAGL-RPGQEARVATSMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D ++  F LL +  GVG ++A   L+ ++  +L +++  ++  ++ ++PGI  K 
Sbjct: 60  YGFADDDEKSLFELLLTASGVGPKLAQAALAVLSPDQLRQAVASEDLAMLVKVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + S +V             + +  ++     + LV LG+    A  A
Sbjct: 120 AQRVVLELKDKIGAPSKMVAG---------RPLQATEAWKDQVQAGLVGLGWSARDAEDA 170

Query: 181 VVSVLK-KEKNIADDSQIIRLALRAIS 206
           VV+V     +       ++R ALR +S
Sbjct: 171 VVAVSPLAAEGEPSVPDLLRAALRVLS 197


>gi|120612876|ref|YP_972554.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1]
 gi|166229622|sp|A1TUZ2|RUVA_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120591340|gb|ABM34780.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1]
          Length = 190

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++          A   +      + + AL+ LGY   + T A
Sbjct: 121 AER-------------LLLELKGKLGVDIGARPEAANDAQADILQALLALGYNDKEGTAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK        S+ I+LAL+A++
Sbjct: 168 ----LKALPKDVGVSEGIKLALKALA 189


>gi|326318908|ref|YP_004236580.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375744|gb|ADX48013.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 190

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++          A   +      + + AL+ LGY   +  +A
Sbjct: 121 AER-------------LLLELKGKLGVDIGARPEAANDAQADILQALLALGYNDREGASA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK        S+ I+LAL+A++
Sbjct: 168 ----LKALPKDVGVSEGIKLALKALA 189


>gi|182418560|ref|ZP_02949841.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521]
 gi|237668331|ref|ZP_04528315.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377563|gb|EDT75114.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521]
 gi|237656679|gb|EEP54235.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 200

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DY++++  G+ Y I+    T+S + + G+   L+V+  +R+D I L
Sbjct: 1   MYEYIKGKYMGMNKDYIVVENSGIGYKIFTSGATMSSVPECGEEVILYVDQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F LL +V GVG + A+ +LS      L  +I+  + K I +  GI  K 
Sbjct: 61  YGFDSKEELAMFKLLLTVNGVGPKAALSLLSISRLNNLKYAIMTGDEKHICRGVGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K      +   D++  + +  +  +        +SAL+ LGY + ++   
Sbjct: 121 AARIILELKDKLQPDELL---DVAVDSNKDNNGENNLMAVSEVLSALIALGYSEKESEKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K E        +I+ AL+A+
Sbjct: 178 LKTIDKTE----TVENMIKNALKAL 198


>gi|83943911|ref|ZP_00956368.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           EE-36]
 gi|83845158|gb|EAP83038.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           EE-36]
          Length = 222

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D++LIDV+GV Y++YC  RT++ L  +G+   LF +  +R+D ++L
Sbjct: 1   MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    G+  KI
Sbjct: 61  FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--------------ICSMPSFAINAISA 166
           A R++ +LK KA  + ++         + +A                    S    A+SA
Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEATAEVIETAAPKRRPVAPPNQSAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG   A  A V+    E   AD  Q+IR AL+ ++
Sbjct: 181 LGNLGYGPGDAAGA-VAQAAGEMPEADTPQLIRAALKLLA 219


>gi|138896159|ref|YP_001126612.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermodenitrificans NG80-2]
 gi|166230554|sp|A4IRB3|RUVA_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134267672|gb|ABO67867.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermodenitrificans NG80-2]
          Length = 194

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    +         T++   ++R+D   L
Sbjct: 1   MIEFIRGYVDYICPEYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK    S         +        S+      AI+AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTMFS---------MPTAPRPAASLSGELAEAIAALKALGYAEREIEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ ++        Q ++ AL  +
Sbjct: 171 IPALREE---TMSTEQYVKRALAML 192


>gi|297155806|gb|ADI05518.1| Holliday junction DNA helicase RuvA [Streptomyces bingchenggensis
           BCW-1]
          Length = 204

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 17/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I  +  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPIAAVGPDIAVVEVGGVGMAVQCTPNTLSGL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQIFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKSLTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +              V +        P ++    +ALV LGY   +A  A
Sbjct: 120 AQRLLLELKDRLGE----------PVGRPAGPAAPAPGWSDQLHTALVGLGYAPREAEDA 169

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +             +Q++R AL+ ++
Sbjct: 170 VAAVTPQAEAAVAAGGSPQVAQLLRAALQTLN 201


>gi|281422792|ref|ZP_06253791.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205]
 gi|281403160|gb|EFB33840.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205]
          Length = 204

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  I G++  L     +++  GV Y +   + T + + +      L+V   +    R D
Sbjct: 1   MIEYIHGDLTELTPALAVVETAGVGYGLNISLNTYTAI-QGKQEVKLYVHEVLVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF +  +R+ + LL +V GVG   A  +LS ++  EL E I   N K++  + GI
Sbjct: 60  SFTLFGFATKQERELYRLLITVSGVGGNTARMILSSLSPRELCEIISTGNDKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K +SL    +   S  N     +         A+SAL  LG+    
Sbjct: 120 GLKTAQRIIIDLKDKIVSLGIADELPASGGN----VVMVNNDVKDEAVSALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VV +LK + ++    Q+++LAL+ I
Sbjct: 176 SAKVVVDILKAQPDLP-VEQVVKLALKQI 203


>gi|325068881|ref|ZP_08127554.1| Holliday junction DNA helicase subunit RuvA [Actinomyces oris K20]
          Length = 217

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 8/212 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L ++G+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEEALVHTEMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ++  K   ++                 +      P    + ++ALV LG+ +  
Sbjct: 120 AQRVILDVADKLGPVTGDDLGAAGTTAQTAPGMEVVAAGGPEPHADVVAALVQLGWNEAS 179

Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAI 205
           A  AV SV     +     D + ++R +LR +
Sbjct: 180 ARQAVASVTADAADGGQEPDMAAVLRASLRWL 211


>gi|153809430|ref|ZP_01962098.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185]
 gi|149128016|gb|EDM19238.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185]
          Length = 201

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L     +ID  GV Y     + T S + +    C LF+   +R+D   L
Sbjct: 1   MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKTCKLFIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQEREIFLLLISVSGIGGNTARMILSALSPSELVSVISAENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  ++        +          +       A++AL  LG+    +   
Sbjct: 120 AQRLIVELKDKIKTVGMAAVGGTTSAG--MLLQSANAEVQEEAVAALTMLGFAAAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V++VLK+E   A   ++I+LAL+ +
Sbjct: 178 VLAVLKEEPE-APVEKVIKLALKRL 201


>gi|196250113|ref|ZP_03148807.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16]
 gi|196210297|gb|EDY05062.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16]
          Length = 194

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +   Y++ID  G+ Y I+ P    +         T++   ++R+D   L
Sbjct: 1   MIEFIRGYVDYICPQYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK    S         +        S+      AI+AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTMFS---------MPTAPQPAASLSGELAEAIAALKALGYAEREIEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ ++        Q ++ AL  +
Sbjct: 171 IPALREE---TMSTEQYVKRALAML 192


>gi|28198789|ref|NP_779103.1| Holliday junction DNA helicase motor protein [Xylella fastidiosa
           Temecula1]
 gi|182681488|ref|YP_001829648.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23]
 gi|32130012|sp|Q87D02|RUVA_XYLFT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560141|sp|B2I4S9|RUVA_XYLF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28056880|gb|AAO28752.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           Temecula1]
 gi|182631598|gb|ACB92374.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23]
 gi|307579942|gb|ADN63911.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 194

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L  +G    LF     + D   L
Sbjct: 1   MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R+ F  LQ V G+G ++A+ +LS ++       I   ++  +  IPG+  K 
Sbjct: 61  YGFLSESERRLFRHLQRVSGIGTKIALAILSSVSVDTFAGLIQAGDANALTVIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   ++ +                       A  AL  LGY   +A   
Sbjct: 121 AERMLVELRDRAADFNNGISTSGKL----------NLDTVSEAALALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
                       D + +I+ AL+
Sbjct: 171 ARDA---GTESDDVAIVIKKALQ 190


>gi|139438977|ref|ZP_01772437.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC
           25986]
 gi|133775688|gb|EBA39508.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC
           25986]
          Length = 206

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        ++DV GV + +     T + L   G    L+    +R+D + L
Sbjct: 1   MISQLHGTLVEATMSSAVVDVSGVGFELGISGSTAATLPTPGGEVRLYTRMQVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV GVG R+A+ VLS  T  +L   ++ ++ K +A++PG+  K 
Sbjct: 61  FGFASKDERTMFDRLVSVSGVGPRLALAVLSTYTVGQLYSLVMAEDDKGMAKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK         V  D            + PS   +A +AL+++G+   +   A
Sbjct: 121 AQRLILELKSTFAKDKGFVPVDAIPGQVAMPVPAAAPSAIDDARAALLSMGFSPQETDVA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +      +        ++  AL+ +
Sbjct: 181 LS---GYDGQDMRVEDLLGAALKRL 202


>gi|91203074|emb|CAJ72713.1| strongly similar to DNA helicase RuvA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 196

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 112/203 (55%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +       ++++V GV Y+++ PI T   +   G+  T+  +  +R+D I+L
Sbjct: 1   MLDYIRGQVISKSPTKLVLEVAGVGYLLHIPISTFEKIPSRGE-VTIHTQLFLREDGIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R  F LL SV GVG  +A+ +LS  TA ++  +I  +++K + +I G+  K 
Sbjct: 60  FGFASDEERGLFQLLLSVNGVGPTMAIAILSGSTANDIKCAIAREDTKALMRIKGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK       + +  +M    +         +FA +AI AL++LGYG+  A  A
Sbjct: 120 AERIVLELKESVKGAKASIDIEMDGRQR---------AFADDAIMALISLGYGRPVAENA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   +KK  ++ +   ++R AL+
Sbjct: 171 VKEAVKKLNSVDNIEVLVREALK 193


>gi|295839916|ref|ZP_06826849.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74]
 gi|197696745|gb|EDY43678.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74]
          Length = 206

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V G+   + C   TLS L +IG+   +     +R+D + L
Sbjct: 1   MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+ ++   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +  ++        +     +ALV LGY   +A  A
Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPAPWTEQLHNALVGLGYQPREAEEA 174

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      +   ++R AL+ ++
Sbjct: 175 VEAVTPQAEAQEGVPEIGPLLRAALQTLN 203


>gi|194468325|ref|ZP_03074311.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23]
 gi|194453178|gb|EDX42076.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23]
          Length = 199

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y+++DV GV Y +                  ++V   +R+D I L
Sbjct: 1   MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVRVYVYQAVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFTDQNEKNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+ K  + SS           + A   ++ S   +A+ AL  LGY +      
Sbjct: 120 ASQIVLDLRDKLTNESS----SSLFATTQLAVDTTVNSELKDALEALAALGYKERDIKKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +++K+E+   D  + +R ALR ++
Sbjct: 176 QKTLMKEEQMATD--EYLRQALRLLN 199


>gi|329938965|ref|ZP_08288339.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus
           M045]
 gi|329301850|gb|EGG45743.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus
           M045]
          Length = 201

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDTAVLEVGGVGMAVQCTPNTLSTL-RLGRPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADEDERQVFELLQTASGVGPRLAQAMLAVHSPDALRRAVSTGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +        +   +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PLGAPAVGAPAGQGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      Q   ++R AL+ ++
Sbjct: 170 VAAVTPQAEAAEGTPQVGPLLRAALQTLN 198


>gi|269941127|emb|CBI49513.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 200

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  HGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   L K K      + ++  L+
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196


>gi|158320755|ref|YP_001513262.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii
           OhILAs]
 gi|167012655|sp|A8MHI4|RUVA_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158140954|gb|ABW19266.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii
           OhILAs]
          Length = 194

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +  D ++++V G+ Y I+  I ++S + K GD  T++    +R+D++ L
Sbjct: 1   MFEYLKGTVADILIDKIIVEVNGIGYRIHSTIHSVSQI-KKGDAITVYTHLVVREDELSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +   F  L SV  +G +VA G+LS  T  +L   I+ ++   +++ PG+  K 
Sbjct: 60  YGFMSIEELDMFQKLISVSKIGPKVASGILSAYTPNKLSAYILSKDISALSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    + V    +   + +             A+ AL+ LGY + ++  A
Sbjct: 120 AERIILELKDKVDKTNVVYDYTLFNDDHKDD---------DEAVQALMALGYSKLESEKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V            +I+ AL+ +
Sbjct: 171 VEAVR---DMSLGTEDVIKRALKWL 192


>gi|315640091|ref|ZP_07895215.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           italicus DSM 15952]
 gi|315484154|gb|EFU74626.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           italicus DSM 15952]
          Length = 200

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y +          GK  +   ++V   +R+D   L
Sbjct: 1   MYEFIKGVVADIQPSYIVLEANGIGYQLVM-GNPYRYSGKKTEEVKVYVHLIVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F+ L SV G+G + A+ +++      L+ +I   +   + + PG+  K 
Sbjct: 60  YGFEKLQEKLLFLRLISVSGIGPKSAIAIMANDDHEGLIAAIESDDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L+  +  +++    +     +  S    AISAL  LGY + +    
Sbjct: 120 AQQMILDLKGKLGELAGELTGNLAMPLFD-----TDTSALTEAISALSALGYSEREIKR- 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V + LKKE   + D + +R AL+ +
Sbjct: 174 VETTLKKEGAHSTD-EYLRKALKLL 197


>gi|317496792|ref|ZP_07955122.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895804|gb|EFV17956.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 201

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +E +    V++D  G+ Y +  P+R  S   KIG    ++   H+R+D + L
Sbjct: 1   MISYIKGILEDMSPGMVVVDNHGIGYQMMVPMRGESF-PKIGQEIKIYTHMHVREDDVSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  +++ F LL  V G+G +V + VLS ++  EL  ++I ++ K I++ PG+  K 
Sbjct: 60  FGFLSKEEKEAFELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K  S   + +  +     + +   S        I  LV+LGY + +A  A
Sbjct: 120 AKKLILELKDKL-SFEELEEDGVGAEIFDTSADSSDSVMIT--IEGLVSLGYSKSEAAIA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  ++       ++++ AL+ I
Sbjct: 177 VNKV--EDAKDLTPEELLKKALKNI 199


>gi|187935379|ref|YP_001885221.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str.
           Eklund 17B]
 gi|229560022|sp|B2TMZ1|RUVA_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187723532|gb|ACD24753.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 198

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DY++I+  G+ Y I+    T+S +   G+   L++E  +R+D I L
Sbjct: 1   MYEYIKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKLYIEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  + + F +L S+ GVGA+ A+ +LS      L  +II  + K + +  GI  K 
Sbjct: 61  YGFESLEELEMFKMLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGVGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K  +      + ++C+++              A+SAL++LGY + +A   
Sbjct: 121 AARIILELKDKLKT-----DELLNCIDEFDDVTQDNSLAVSEALSALISLGYTEKEAEKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K E        II+ AL  +
Sbjct: 176 LRDVDKSE----SVENIIKSALVKL 196


>gi|288801343|ref|ZP_06406797.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288331726|gb|EFC70210.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 204

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG++  +     +I+  GV Y +   + T S + +  +   L+V     T  R D
Sbjct: 1   MIEYIKGDLAEITPALAVIETAGVGYALNISLTTYSAI-QGKEEVKLYVHEALVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R+ + LL +V GVGA  A  +LS I+  EL   I   + +++  + GI
Sbjct: 60  SYTLYGFATKQERELYRLLITVSGVGANTARMILSSISPAELCNVIASGDERMLKSVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K   LSS +  +    N   A I S  +    A+ AL  LG+    
Sbjct: 120 GLKTAQRIIVDLKDKI--LSSGIATEFKVGNDSNATIDS--AVKDEAVGALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   V  +LK E  +    Q+++LAL+ I
Sbjct: 176 SAKVVSEILKNEPTLP-VEQVVKLALKQI 203


>gi|16079826|ref|NP_390652.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310713|ref|ZP_03592560.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315037|ref|ZP_03596842.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319958|ref|ZP_03601252.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324239|ref|ZP_03605533.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312303|ref|YP_004204590.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5]
 gi|3183558|sp|O05392|RUVA_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2635239|emb|CAB14734.1| Holliday junction DNA helicase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|6977805|emb|CAB75330.1| RuvA protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485185|dbj|BAI86260.1| Holliday junction DNA helicase motor protein [Bacillus subtilis
           subsp. natto BEST195]
 gi|320018577|gb|ADV93563.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5]
          Length = 201

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K     T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERSQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L       ++++I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   + +++   ++E+    +  +    A+ AL  LGY + +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFN-HEERLEKQTAETALEEALEALRVLGYAEKEIKK- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+  LK+E  +  D Q ++ AL+ +
Sbjct: 176 VLPHLKEEIGLTTD-QYVKKALQKL 199


>gi|150016408|ref|YP_001308662.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB
           8052]
 gi|189045748|sp|A6LTM6|RUVA_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149902873|gb|ABR33706.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB
           8052]
          Length = 198

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DYV+++  G+ Y I+    T+S + K G+   L++E  +R+D I L
Sbjct: 1   MYEYIKGKYIGINKDYVIVENSGIGYKIFTSGATMSSMPKNGEEIMLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  + + F LL +V GVG + A+ +LS      L  +I++ + K I +  GI  K 
Sbjct: 61  YGFDSKEELEMFKLLLTVSGVGPKAALSLLSISRVNNLKYAIMIGDEKHICRGVGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ E+K K      +V   +    K+  ++ ++      A+SAL+ LGY + +A + 
Sbjct: 121 AARIILEIKDKL-KPDELVDSSLEIDTKDNENVMALS----EALSALIALGYSEKEAESV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K +        II+ AL+A+
Sbjct: 176 LKKIDKND----SVENIIKNALKAL 196


>gi|282878437|ref|ZP_06287223.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC
           35310]
 gi|281299423|gb|EFA91806.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC
           35310]
          Length = 204

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  I+G +  L     +++  GV Y +   + T S + +      L+V     T  R D
Sbjct: 1   MIEYIRGELTELTPALAVLEAAGVGYGLNISLNTYSAI-QGKKEVKLYVHESLVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
               +GF S  +R+ + LL +V GVGA  A  +LS ++  EL   I   + +++  + GI
Sbjct: 60  NFTFYGFFSKQERELYRLLITVSGVGANTARMILSTLSPAELCNVIANGDERMLKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +L+ K +S     +  +S     +       S    A+SAL  LG+    
Sbjct: 120 GLKTAQRIIVDLRDKIVSSGIATELHVSS----EPATAVDASIRDEAVSALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   V  +LK + ++    Q+++LAL+ I
Sbjct: 176 SAKVVEGILKSDPSLP-VEQVVKLALKQI 203


>gi|255691218|ref|ZP_05414893.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM
           17565]
 gi|260623130|gb|EEX46001.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM
           17565]
          Length = 201

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKTCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++ +      +          +       A++AL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGASAAGGSAVGG--MLLQAANAEVQEEAVAALTMLGFAAAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E   A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPE-APVEKVIKLALKRL 201


>gi|194333233|ref|YP_002015093.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM
           271]
 gi|229560116|sp|B4S4U8|RUVA_PROA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194311051|gb|ACF45446.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM
           271]
          Length = 200

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  ++DV GV Y +     T   L   GD   L    H+++D ++L
Sbjct: 1   MYAYFRGELISSSRDNAIVDVGGVAYRLLISNSTYRQLPSSGDQVKLLAHLHVKEDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ + +RQ F+LL S+ GVG ++A+ +LS +   E+ E+I+    + +  I G+  K 
Sbjct: 61  YGFIEEEERQLFLLLLSISGVGPKLALAILSGLPVEEIQEAIMANKPETLFGISGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + L        +          S+ S + +A+ AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDRILKLQQTRPGKTAGAG-------SVASLSEDALQALMTLGFSRASAQQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L   +N      I+R AL+ I
Sbjct: 174 VTRALLSAEN-PGVEDIVREALQNI 197


>gi|288803240|ref|ZP_06408674.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18]
 gi|288334281|gb|EFC72722.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18]
          Length = 205

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  I+G +  L     +++  GV Y +   + T S + +      L+V     T  R D
Sbjct: 1   MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  NYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPNTPTVNTAIKDEAVSALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L ++ ++    Q+++LAL+ I
Sbjct: 177 SAKVVVSILAEQPDLP-VEQVVKLALKMI 204


>gi|148261887|ref|YP_001236014.1| Holliday junction DNA helicase RuvA [Acidiphilium cryptum JF-5]
 gi|326405391|ref|YP_004285473.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium
           multivorum AIU301]
 gi|166229624|sp|A5G2L3|RUVA_ACICJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146403568|gb|ABQ32095.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum
           JF-5]
 gi|325052253|dbj|BAJ82591.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium
           multivorum AIU301]
          Length = 204

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G  E + +   LIDV GV Y+++C  R+L+ L       TL VET +R+D I L
Sbjct: 1   MIGRLCGTAEQIEDGRCLIDVSGVGYVVFCSARSLAALPAPPARATLLVETQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R WF LL ++QGVGA+VA+ +LS +   +L  +I   +   I + PG+  K+
Sbjct: 61  FGFIDAAERDWFRLLTTIQGVGAKVALNLLSALPPDQLASAIAASDRGAITRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R+++EL+ +  ++ +               +        +A+SALVNLGY + +A  A
Sbjct: 121 AARLISELRERIAAMPT---GSAFIPTGTAPPVAPPQGKLADALSALVNLGYRRAEAEAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V  +    A   ++IR  LR ++
Sbjct: 178 LSAVQAEAGEDAALDELIRGGLRRLA 203


>gi|257866610|ref|ZP_05646263.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC30]
 gi|257872874|ref|ZP_05652527.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC10]
 gi|257800568|gb|EEV29596.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC30]
 gi|257807038|gb|EEV35860.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC10]
          Length = 196

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  ++  Y++++  G+ Y I       S  GK+     +++   +R+D   L
Sbjct: 1   MYEYIIGKVTDIFPAYIVVETHGIGYQIAF-GNPYSFSGKLNQEVKIYLHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   +Q F+ L SV G+G + A+ +++    T L+ ++   +   + + PG+  K 
Sbjct: 60  YGFATIEGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L            +    +    +    A+ AL  LGY + +   A
Sbjct: 120 AQQMILDLKGKVAELVG---------EEAIVPLSVATTALDEAMEALKALGYSEKEVKKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +   E       + +R ALR +
Sbjct: 171 EKQLA--ENTTKSTDEYLREALRLM 193


>gi|163745818|ref|ZP_02153177.1| Holliday junction DNA helicase motor protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380563|gb|EDQ04973.1| Holliday junction DNA helicase motor protein [Oceanibulbus
           indolifex HEL-45]
          Length = 225

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 18/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+    D+VLIDV+GV Y++Y   RT++ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLSGRIDYRAADHVLIDVRGVGYLVYVSDRTMAALPSVGEVVALYTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    GI  KI
Sbjct: 61  FGFQTLVEKEWHRLLTSVQGVGAKASLAILGTLGPDGVSRAIALGDWNAVKAAKGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-----------------HICSMPSFAINA 163
           A R++ +LK KA  + ++       + + +A                       S    A
Sbjct: 121 AQRVVLDLKDKAPGVMAMTGTVADAMGEAEAAADESVIEAATPRRAPKPAAPNASAQSEA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SAL NLGYG   A  A V+    E   AD   +IR AL+ ++
Sbjct: 181 LSALGNLGYGPGDAAGA-VAQAAGEMPDADTPTLIRAALKLLA 222


>gi|56963319|ref|YP_175050.1| Holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16]
 gi|81366439|sp|Q5WHR6|RUVA_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56909562|dbj|BAD64089.1| holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16]
          Length = 199

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKGN+  +   Y++++  G+ + IYC       +  +     +    ++R+D  RL
Sbjct: 1   MIDYIKGNLVAVEPAYLVVEANGIGFQIYC-ANPYRFINDLNREVVVPTHHYVREDSQRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L +V G+G + A+ +L+     +++ +I  ++  ++ + PG+  K 
Sbjct: 60  FGFTTRTERLLFEKLLNVSGIGPKGALAILASGEPEDIIHAIEQEDEALLVRFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   ++ +++       +++           +A+ AL  LGY + +    
Sbjct: 120 ARQIILDLKGKLDDMAPMLEPAAGADKQQK------NPQLEDALEALRALGYVEKE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   LK E    +  + IR AL  +
Sbjct: 173 VEKQLKAE--TLETDEYIRRALALM 195


>gi|319400968|gb|EFV89187.1| holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           FRI909]
          Length = 200

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++  G+ Y I  P  +      +     ++    +R+D   L
Sbjct: 1   MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + Q PGI  K 
Sbjct: 60  YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK     ++ +++   + + Q +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKV----TITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELSKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+ K   N  D++  +++ L+ +
Sbjct: 176 EKSLNKHNVNSVDEA--VKIGLQTL 198


>gi|157964465|ref|YP_001499289.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5]
 gi|157844241|gb|ABV84742.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5]
          Length = 212

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 123/203 (60%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 9   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 67

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 68  YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 127

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   +SS      + +          P  +   I ALVNLG+ + +A  A
Sbjct: 128 AERVVLELKGKVAKISS----GSAIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQNA 183

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 184 VQGIITQNPEISID-ELIKTALK 205


>gi|149277483|ref|ZP_01883624.1| Holliday junction DNA helicase [Pedobacter sp. BAL39]
 gi|149231716|gb|EDM37094.1| Holliday junction DNA helicase [Pedobacter sp. BAL39]
          Length = 194

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      Y++++  G+ Y I   + T S LG + + C ++   H+++D   L
Sbjct: 1   MFEYIDGRLSFKCPAYIVVEAGGIGYHINISLNTYSLLGDM-ERCKIYTWLHVKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F+ L SV G+GA  A  +LS IT  E+  +I+  +  +I +I GI  K 
Sbjct: 60  YGFAEEGERRLFLHLISVSGIGANTARMMLSSITPIEIQTAIVNGDLPLIQRIKGIGAKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     S                    +    A+SAL+ LG+ +  A  A
Sbjct: 120 AQRLVLELQDKLKKEGS----------GSLIAAPLNHTVREEALSALMMLGFAKQPAEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +K         Q+I++AL+ +
Sbjct: 170 LDNAVKTGGVELSVEQMIKIALKNL 194


>gi|91205752|ref|YP_538107.1| Holliday junction DNA helicase motor protein [Rickettsia bellii
           RML369-C]
 gi|122990902|sp|Q1RHZ6|RUVA_RICBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91069296|gb|ABE05018.1| Holliday junction DNA helicase RuvA [Rickettsia bellii RML369-C]
          Length = 203

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++  Y+DYV+IDV GV Y ++   +TLS L + G+   LF+ETH+R+D I L
Sbjct: 1   MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++ +F LLQSV G+G R+A+ +LS +T T++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLSLEEKSFFNLLQSVNGIGTRMALSILSTLTPTDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  K   +SS      + +          P  +   I AL+N+G+ + +A  A
Sbjct: 120 AERIVRELSDKVAKISS----SSAAIKDSLNIKGITPVASSEVIKALINMGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ K   I+ D ++IR AL+
Sbjct: 176 VQEIITKNPEISID-ELIRTALK 197


>gi|332978537|gb|EGK15246.1| crossover junction ATP-dependent DNA helicase RuvA [Psychrobacter
           sp. 1501(2011)]
          Length = 210

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 4/210 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +  L      I    GV Y +  P+     L ++    +++   H+R+D   
Sbjct: 1   MIGSIEGRVCHLAAPVACIMTASGVGYEVELPLPDFCQL-QLDATVSVWTHLHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R  F  L  + GVGA++A+ ++S ++A EL +++   N   + ++PGI  K
Sbjct: 60  LYGFIKHQERDVFRQLIRINGVGAKMALAMMSTMSAPELKQAVETDNDVALTRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELKGK  ++ +             +   S         SAL++LGY   +A  
Sbjct: 120 TAQRLLIELKGKFDNIETSGGLFEEQGGATISLAGSEGVILAEVESALISLGYRDKEAQR 179

Query: 180 AVVSVLKKEKN--IADDSQIIRLALRAISC 207
           A+ +  + E    I D   +++L L+ +S 
Sbjct: 180 AIKAARETEAGQTIVDTQSLLKLTLQQLSS 209


>gi|224476739|ref|YP_002634345.1| Holliday junction DNA helicase RuvA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254767387|sp|B9DNE5|RUVA_STACT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222421346|emb|CAL28160.1| holliday junction DNA helicase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 201

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++  GV Y I  P  +           T++    +R+D   L
Sbjct: 1   MYAYIKGKLSQLFPTHVVVETNGVGYEIQTP-NSYRFQQYYQQEVTIYTSLVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F+ L  V G+G + A+ +L+  T  E+   I  +N   + + PGI  K 
Sbjct: 60  YGFMSEEEKGMFLSLNKVTGIGPKSALAILAASTPNEVKIGIENENETYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK        +   + +N E +           A+ AL  LGY + +    
Sbjct: 120 ARQIILDLKGKV---QITEENPETLLNFEGSESNQTSPILDEALLALEALGYSKRELNKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  + ++     + ++  L+ +
Sbjct: 177 EKKL--QAESYTSVDEAVKAGLKIL 199


>gi|325278890|ref|YP_004251432.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter
           splanchnicus DSM 20712]
 gi|324310699|gb|ADY31252.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter
           splanchnicus DSM 20712]
          Length = 193

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +      Y +I+  GV Y I   + T S +  +    +L++   +R+D + L
Sbjct: 1   MYEYIKGLLVEATPAYAVIECGGVGYYINISVNTYSQIVAL-QQVSLYIHQIVREDALLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV G+GA  A  +LS +T  E+  +I+ +N   I  + GI +K 
Sbjct: 60  YGFFNKEERTVFRQLISVSGIGANTASVMLSSMTVKEIAGAILTENVNAIKSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     S           E+ +  +  +    A++ALV LG+ + QA   
Sbjct: 120 AQRVIIELKDKIAVTGS----------AEEMNFGASVAIKEEALAALVMLGFVKAQANKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++     +    ++I+ AL+ +
Sbjct: 170 LDKIMA-GGGVTSVEELIKQALKQL 193


>gi|54025666|ref|YP_119908.1| Holliday junction DNA helicase RuvA [Nocardia farcinica IFM 10152]
 gi|81374258|sp|Q5YTE7|RUVA_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54017174|dbj|BAD58544.1| putative Holliday junction DNA helicase B subunit [Nocardia
           farcinica IFM 10152]
          Length = 201

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++  GV Y +     TL+ L + G    L+    +R+D + L
Sbjct: 1   MIASVRGEVLEIALDHVVVEAAGVGYRLNATPSTLATLTR-GAEARLYTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM VL+ +    L +++   N   + ++PGI  + 
Sbjct: 60  YGFADTEARDLFGLLQTVSGVGPRLAMAVLAVLEPEALRKALAESNVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   +       +           +        + AL  LG+   QA  A
Sbjct: 120 AERMVVELRDKVNLVP------VQAGPPGSTPAVAATPVREQVVEALTGLGFPLKQAEQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +VL ++   AD S  +R AL  +
Sbjct: 174 LDTVLAEQP-AADTSTALRAALSLL 197


>gi|25028330|ref|NP_738384.1| Holliday junction DNA helicase motor protein [Corynebacterium
           efficiens YS-314]
 gi|259507385|ref|ZP_05750285.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens
           YS-314]
 gi|29336725|sp|Q8FPK4|RUVA_COREF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|23493615|dbj|BAC18584.1| holliday junction DNA-helicase RuvA [Corynebacterium efficiens
           YS-314]
 gi|259165010|gb|EEW49564.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens
           YS-314]
          Length = 204

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 3/194 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+ QGV Y +     TL+ L + G+  TL     +R+D ++L
Sbjct: 1   MIASLRGTVISIGLGTAVIECQGVGYEVTTTPTTLARLQR-GEEATLLTTMVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D  R+ F LLQ+V G+G R+A+   S +T  E+ ++I   ++K + ++PG+  ++
Sbjct: 60  YGFIDDQSREMFALLQTVTGLGPRLALACESVLTPLEIAQAIAGGDAKTLQRVPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +  V  D +     Q     +    +    AL  LG+ + QA  A
Sbjct: 120 ADRLIVELKDKVAAYTVGVVDDGAPTAPTQGVAPVVVVDQV--TQALTGLGFTEKQADDA 177

Query: 181 VVSVLKKEKNIADD 194
           V +VL  +  +   
Sbjct: 178 VAAVLSADPGLDTS 191


>gi|84496343|ref|ZP_00995197.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649]
 gi|84383111|gb|EAP98992.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649]
          Length = 201

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D V+I+V GV  +++   RT   + ++G   T+     +R+D + L
Sbjct: 1   MIASLSGRVAHVGLDRVVIEVGGVGMLVHTTPRTAGEV-RMGQDVTVSTTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  +Q+V GVG R+A+ +LS +T   +  ++   +   + +IPG+  K 
Sbjct: 60  FGFGSPSERDMFETVQTVSGVGPRLALAMLSVLTPDAVSAALRAGDLATLTKIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K    S     D++             +       ALV LG+   QAT A
Sbjct: 120 AERLVLELKDKVGMPSGSPGADVTPSAASLGD-----AKRDQVAEALVGLGWSAKQATDA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V SV       A  + ++R+ALR +
Sbjct: 175 VASVSAAADPEASVAALLRMALREL 199


>gi|322437324|ref|YP_004219536.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9]
 gi|321165051|gb|ADW70756.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9]
          Length = 196

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y +   + T S L + G    LF+ T + ++Q+ L
Sbjct: 1   MIAHLRGLLLFKSTNQAVVECGGVGYDVAISVATYSALPREGAEAKLFIFTKVAEEQLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  F  L ++ G+G ++A+ VLS I A  LV +I   +   + +IPGI  K 
Sbjct: 61  FGFSDRQEKSLFEKLLTITGIGPKLAITVLSGIAADRLVTAIRGGDHDTLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++              A + S      + +SALVNLGY + QA  A
Sbjct: 121 AERVVLELKDKLDDMA----------TAPVAAVQSHGPAGDDVLSALVNLGYARPQAQKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
           +   L+          + R A
Sbjct: 171 IEMALRDPGAAGSFEVLFRAA 191


>gi|154493758|ref|ZP_02033078.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC
           43184]
 gi|154086508|gb|EDN85553.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC
           43184]
          Length = 197

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T +          ++V   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPARMILECAGIGYELNISLNTYTFYNGKP-TGKIYVYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F++L SV GVG   A  +LS ++ +EL+  I  +N   +  + GI +K 
Sbjct: 60  FGFAGKDERELFLMLTSVSGVGPNTARMILSSLSPSELIRVIADKNETALTSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   +  +       V    + + +  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPIEGM------TVTGGSSSVAASGAVTEEAVAALVMLGFQKAASQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK    +A   Q+I+ ALR +
Sbjct: 174 VNLILKGSPALA-VEQVIKTALRML 197


>gi|152980261|ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthinobacterium sp.
           Marseille]
 gi|166230559|sp|A6SUQ3|RUVA_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151280338|gb|ABR88748.1| RuvA holliday junction DNA helicase [Janthinobacterium sp.
           Marseille]
          Length = 191

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +  P+ T   L  +GD   L     +R+D   L
Sbjct: 1   MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  + G+GAR A+ +LS ++  +L ++I +Q +  + +IPGI  K 
Sbjct: 61  FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++                     + ++AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADLGVAGAVATDATSDILNALLALGYSDKEAMLA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+++S
Sbjct: 168 LKQV----PAGTGVSDGIKLALKSLS 189


>gi|218671058|ref|ZP_03520729.1| Holliday junction DNA helicase RuvA [Rhizobium etli GR56]
          Length = 197

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 94/200 (47%), Positives = 139/200 (69%), Gaps = 3/200 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ YC  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRL 200
           V + +K     AD +++IRL
Sbjct: 178 VAAAMKTAGEGADSAKLIRL 197


>gi|282164971|ref|YP_003357356.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella
           paludicola SANAE]
 gi|282157285|dbj|BAI62373.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella
           paludicola SANAE]
          Length = 196

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQIR 59
           MI  ++G +E    + ++IDV GV Y +  P      +   G+ C +F+ T+ R+ D   
Sbjct: 1   MIAHLEGRLEYKGHERIVIDVGGVGYDVRVPTHLYDLIPAEGERCKVFIHTYFREEDGTS 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  DR++F LL +V G+G +VA+G++S ITA++L E+I+++++K + ++ G+  K
Sbjct: 61  LYGFTTWQDREFFKLLMTVSGIGPKVALGIMSSITASDLAEAIVVEDAKALTRVNGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A R++ ELK K   +S           + +A        + +A SALV LGY +  A+ 
Sbjct: 121 MAQRLILELKDKVAEMS----------IENRAKKPGADMTSEDATSALVALGYSRQAASA 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV         ++   ++I+ +LR +
Sbjct: 171 AVARARDASPGLSKVEELIKTSLRYL 196


>gi|226698801|sp|A4G1U8|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193222212|emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans]
          Length = 192

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +  P+ T   L  +G+   L     +R+D   L
Sbjct: 1   MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGEKVALLTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + G+GAR A+ +LS ++  +L  +I LQ +  + +IPGI  K 
Sbjct: 61  FGFGTAEERNVFKQLVKITGIGARTALSILSGMSVADLSNAITLQEAGRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +  +     +   A          + ++AL+ LGY   +A  A
Sbjct: 121 AER------------LLLELKGKLGADLGAAGGVIHSDATSDILNALLALGYSDKEALLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+A+S
Sbjct: 169 MKQV----PAGTGVSDGIKLALKALS 190


>gi|238650928|ref|YP_002916784.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii
           str. Rustic]
 gi|259495655|sp|C4K2D5|RUVA_RICPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|238625026|gb|ACR47732.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii
           str. Rustic]
          Length = 203

 Score =  213 bits (544), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ + L
Sbjct: 1   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASDKTLGTLAE-GEFYKLFIETHVREEHMHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS      + + +        P  +   I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197


>gi|311069260|ref|YP_003974183.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942]
 gi|310869777|gb|ADP33252.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942]
          Length = 201

 Score =  213 bits (544), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K  +  T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERNQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+      ++E+I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILASGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   + +++   ++++       +    A+ AL  LGY + +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFN-HEDRIEKHKAETALDEALEALRVLGYAEKEIKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  KE       Q ++ AL+ +
Sbjct: 177 LPHL--KEDTTLTTDQYVKKALQKL 199


>gi|302345821|ref|YP_003814174.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC
           25845]
 gi|302149753|gb|ADK96015.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC
           25845]
          Length = 205

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  I+G +  L     +++  GV Y +   + T S + +      L+V     T  R D
Sbjct: 1   MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  NYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPNTPAVNAAIKDEAVSALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L ++ ++    Q+++LAL+ I
Sbjct: 177 SAKVVVSILTEQPDLP-VEQVVKLALKMI 204


>gi|21673101|ref|NP_661166.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS]
 gi|25453273|sp|Q8KFR0|RUVA_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|21646174|gb|AAM71508.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS]
          Length = 201

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +  +  +++V G+ Y+++    T   L   G    LF   ++R+D  +L
Sbjct: 1   MFAFLRGELVTVSREEAVVEVSGIGYLLHISSGTSRRLPPEGSQVRLFTHHYVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL + + Q F LL ++ GVG ++AM VLS ++  E+ E+I+    + +  I G+  K 
Sbjct: 61  FGFLDEEELQLFRLLLTIGGVGPKLAMAVLSGLSVGEIQEAIVANRPETLYGITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL+ K + +           + + A          +A++AL+ LG+ +  A  A
Sbjct: 121 ASRIILELRDKILKIQP-------AASGKTAGAPQALQLNEDALAALMTLGFPKPAAQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +  +L+    +    +++R AL
Sbjct: 174 ISGILETSPGL-SVEEVVRAAL 194


>gi|27468243|ref|NP_764880.1| holliday junction DNA helicase [Staphylococcus epidermidis ATCC
           12228]
 gi|57867153|ref|YP_188781.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           RP62A]
 gi|251811047|ref|ZP_04825520.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875933|ref|ZP_06284800.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           SK135]
 gi|293366401|ref|ZP_06613080.1| crossover junction endoribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|33301648|sp|Q8CS90|RUVA_STAES RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71153736|sp|Q5HNQ9|RUVA_STAEQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|27315789|gb|AAO04924.1|AE016748_158 holliday junction DNA helicase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637811|gb|AAW54599.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           RP62A]
 gi|251805423|gb|EES58080.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294958|gb|EFA87485.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           SK135]
 gi|291319526|gb|EFE59893.1| crossover junction endoribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724713|gb|EGG61219.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU144]
 gi|329733747|gb|EGG70073.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU045]
 gi|329737232|gb|EGG73486.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU028]
          Length = 200

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++  G+ Y I  P  +      +     ++    +R+D   L
Sbjct: 1   MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + Q PGI  K 
Sbjct: 60  YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK     ++ +++   + + Q +          A+ AL  LGY + + T  
Sbjct: 120 ARQIVLDLKGKV----TITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELTKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+ K   N  D++  +++ L+ +
Sbjct: 176 EKSLNKHNVNSVDEA--VKIGLQTL 198


>gi|83954484|ref|ZP_00963195.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83840768|gb|EAP79939.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 222

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D++LIDV+GV Y++YC  RT++ L  +G+   LF +  +R+D ++L
Sbjct: 1   MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    G+  KI
Sbjct: 61  FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--------------ICSMPSFAINAISA 166
           A R++ +LK KA  + ++         + +A                    S    A+SA
Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEAAAEVIETAAPKRRPVAPPNQSAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG   A  A V+    E   A+  Q+IR AL+ ++
Sbjct: 181 LGNLGYGPGDAAGA-VAQAAGEMPEAETPQLIRAALKLLA 219


>gi|260591290|ref|ZP_05856748.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319]
 gi|260536656|gb|EEX19273.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319]
          Length = 205

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG +  L     +++  GV Y +   + T S + +      L+V     T  R D
Sbjct: 1   MIEYIKGELAELTPAMAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  NYTLYGFANKQERALYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+               A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSNTPGTPAVDAGIKDEAVSALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L ++ ++    Q+++LAL+ I
Sbjct: 177 SAKVVVSILTEQPDLP-VEQVVKLALKMI 204


>gi|227833242|ref|YP_002834949.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184228|ref|ZP_06043649.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|254766955|sp|C3PGQ7|RUVA_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|227454258|gb|ACP33011.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 202

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 103/207 (49%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +++  GV Y +      L  L + G+   +     +++D + L
Sbjct: 1   MIASLRGTVLDIQLDHAVLECAGVGYKVLATPAMLGTLQR-GEEARVMTTLVVKEDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  DR  F +LQ+V G+G ++A+  LS ++A +L ++I  + +  + +IPG+  ++
Sbjct: 60  YGFTSQDDRDMFHVLQTVSGLGPKLALAALSVMSAGDLAQAIAGEEAARLQKIPGVGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +          +   A   +      + + AL+ LG+    A   
Sbjct: 120 AQRLILELKDKVKAFAP-----AESADLSSAAPAAAGPVVEDVVEALIGLGFTDKMARPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V SV+ ++ + A    ++R AL  +  
Sbjct: 175 VESVVAEQPDAA-TPVVLRAALSQLGA 200


>gi|325917782|ref|ZP_08179966.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535998|gb|EGD07810.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 194

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITGGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY       A
Sbjct: 121 AERMVVELRDRAADFSSGAPITGQL----------GPDAVSEATVALQQLGYKP---AEA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                +      + + +IR AL+A
Sbjct: 168 ARMAREAGAEGDEVATVIRKALQA 191


>gi|254419140|ref|ZP_05032864.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3]
 gi|196185317|gb|EDX80293.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3]
          Length = 205

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E   LID  GV Y++ C  RTL  L   GD  T+ V +   +D   R
Sbjct: 1   MIGRLRGVLAEVGEADCLIDCAGVGYVVSCGARTLGRLPAPGDEATVHVHSQWSEDAGPR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  +R+ F  L ++QGVG + A+ VL  +   EL  ++  ++   +A+  G+  K
Sbjct: 61  LYGFLTRDERRAFTTLLAIQGVGPKAALAVLDVLPPGELAGAVAREDKAAVARANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELKGK +   S          +        PS    A+SAL+ LG  +  A  
Sbjct: 121 LALRIVTELKGKPLGDVSFAPTAPGVHVEIAPPP---PSLTGEAVSALLGLGVAEVNARR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV   L +  + A+   +IR AL+ +
Sbjct: 178 AVDQALIRLGDEAELPAVIRAALQEL 203


>gi|171060623|ref|YP_001792972.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6]
 gi|229560097|sp|B1Y8E1|RUVA_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170778068|gb|ACB36207.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6]
          Length = 191

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ T   L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLTGTLAEKSPPQLLVDVGGVGYEVDVPMSTFYNLPVLGERVTLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR A+ +LS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  YGFLTATERATFRQLLKISGVGARTALSILSGLSVADLAQAVSAQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +  +     +              + + AL+ LGY + +A  A
Sbjct: 121 AER------------LLLELKGKLGPDLALPGAVIRNEAQSDIVQALIALGYNEREAAAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    K        S  I+LALRA+
Sbjct: 169 I----KPLPADVGVSDGIKLALRAL 189


>gi|288957819|ref|YP_003448160.1| holliday junction DNA helicase [Azospirillum sp. B510]
 gi|288910127|dbj|BAI71616.1| holliday junction DNA helicase [Azospirillum sp. B510]
          Length = 208

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+V++DV GV Y++ C  RTLS +  +G+  +L VET +R+++I L
Sbjct: 1   MIAKLTGIVDSTGTDWVVLDVNGVGYLLSCSNRTLSRMV-VGERLSLVVETFIREERIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL ++QGVGAR+A+ +L  +   +L  +I  Q+   + +  G+  K+
Sbjct: 60  HGFGDQAERDWFKLLTTIQGVGARLALSILGVLDPDQLTRAIAAQDKTALVRADGVGPKV 119

Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A+RI+ ELK K  +  L               A +        +A+SALVNLGYG+ +A 
Sbjct: 120 AARILNELKDKVGNLALGPAAAAGAPAGKGAPAAVPGASPALADAVSALVNLGYGRSEAF 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AVV+  +   + A  S +IR  L+ +S
Sbjct: 180 GAVVAAGRVLGDDAGVSDLIRQGLKELS 207


>gi|148543762|ref|YP_001271132.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri DSM
           20016]
 gi|184153168|ref|YP_001841509.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM
           1112]
 gi|227363258|ref|ZP_03847390.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri MM2-3]
 gi|325682134|ref|ZP_08161652.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri MM4-1A]
 gi|167012661|sp|A5VIX1|RUVA_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560094|sp|B2G6E7|RUVA_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148530796|gb|ABQ82795.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus reuteri
           DSM 20016]
 gi|183224512|dbj|BAG25029.1| holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM
           1112]
 gi|227071714|gb|EEI10005.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri MM2-3]
 gi|324978778|gb|EGC15727.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri MM4-1A]
          Length = 199

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y+++DV GV Y +                  ++V   +R+D I L
Sbjct: 1   MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVQVYVYQAVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFTDQNEKNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+ K  + SS           +     ++     +A+ AL  LGY +      
Sbjct: 120 ASQIVLDLRDKLTNESS----SSLFATTQLTVDATVNRELKDALEALAALGYKERDIKKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +++K+E+   D  + +R ALR ++
Sbjct: 176 QKALMKEEQMATD--EYLRQALRLLN 199


>gi|300727799|ref|ZP_07061181.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14]
 gi|299774952|gb|EFI71562.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14]
          Length = 205

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG +  L     +++  GV Y +   + T S +    D   L+V   +    R D
Sbjct: 1   MIEYIKGELTELTPALAVVEAAGVGYALNISLNTYSAIQGKKD-VKLYVHEALVAGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R+ + LL +V GVGA  A  +LS ++  EL   I   N K++  + GI
Sbjct: 60  SFTLYGFFTKQERELYRLLITVSGVGANTARMILSSLSPVELCTVISSGNDKMLKSVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K ISL    +      N   A           A++AL  LG+    
Sbjct: 120 GLKTAQRIIVDLKDKIISLGIATEL---PSNAGHATAIINNDVKDEAVAALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   V ++L    ++    Q+++LAL+ I
Sbjct: 177 SAKVVTAILTDSPDMP-VEQVVKLALKQI 204


>gi|87198447|ref|YP_495704.1| Holliday junction DNA helicase RuvA [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123722701|sp|Q2GBA3|RUVA_NOVAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|87134128|gb|ABD24870.1| Holliday junction DNA helicase RuvA [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 204

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 117/204 (57%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ +IDV GV Y+++C  +TL+ LG  GD   +  E  + +   RL
Sbjct: 1   MIAKLTGILDDTGPDWAVIDVNGVGYLVHCSAKTLTHLGLRGDKVVVHTEMQVSETDQRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R WF LL +VQGVG++VA+ +LS ++  EL  +    +S ++A+  G+  K+
Sbjct: 61  IGFTSAGERAWFRLLTAVQGVGSKVALAILSALSVEELQRACAHGDSAMVARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK KA  L+             +A +    + + +A+SAL NLG+    A++A
Sbjct: 121 ASRIVNELKDKAGGLAGYAS---PVGPGGEAFVAPPGNASADAVSALQNLGFKPAVASSA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V + +K+    A  + ++R+AL+ 
Sbjct: 178 VAAAVKELGEDAGLNDLVRVALKR 201


>gi|227544210|ref|ZP_03974259.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri CF48-3A]
 gi|300908206|ref|ZP_07125672.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri SD2112]
 gi|133930481|gb|ABO43812.1| RuvA [Lactobacillus reuteri]
 gi|227185803|gb|EEI65874.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri CF48-3A]
 gi|300894633|gb|EFK87989.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri SD2112]
          Length = 199

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y+++DV GV Y +                  ++V   +R+D I L
Sbjct: 1   MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVQVYVYQAVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFTDQNEKKLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVNYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+ K  + SS           +     ++     +A+ AL  LGY +      
Sbjct: 120 ASQIVLDLRDKLTNESS----SSLFATTQLTVDATVNRELKDALEALAALGYKERDIKKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +++K+E+   D  + +R ALR ++
Sbjct: 176 QKTLMKEEQMATD--EYLRQALRLLN 199


>gi|78188435|ref|YP_378773.1| Holliday junction DNA helicase RuvA [Chlorobium chlorochromatii
           CaD3]
 gi|90134727|sp|Q3ATE5|RUVA_CHLCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78170634|gb|ABB27730.1| Holliday junction DNA helicase subunit RuvA [Chlorobium
           chlorochromatii CaD3]
          Length = 204

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 6/202 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  +I++QGV Y       T   L   G    LF   ++R+D + L
Sbjct: 1   MYAYFRGTLISFTADEAIIELQGVAYHFLISATTSRQLPNSGSEVQLFAHLYVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +RQ F LL    GVG ++A+ VLS +   E+ ++I+    + +  I G+  K 
Sbjct: 61  YGFYSEEERQLFRLLLQASGVGPKLALSVLSGLPVHEVHDAIVSNIPERLYGISGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + LS V+    +      A          +AI+ALV LG+ +  A   
Sbjct: 121 AARIILELRDKILKLSPVLPTATARRPHNAAQ-----QLRDDAITALVTLGFPRAAAQKT 175

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V S+L +  N     ++++ AL
Sbjct: 176 VTSLLDENSNCT-VEEVVKSAL 196


>gi|295103887|emb|CBL01431.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium
           prausnitzii SL3/3]
          Length = 203

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V++   GV Y   CP      L  +G   TL+    + ++ + L
Sbjct: 1   MIYCLTGKIVKKSLNAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  +  F +L +V GVG +V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+ ELK K     +  +  +D++    +     S    +  AI+ALV+LGY Q +A 
Sbjct: 121 AQRIVLELKDKVAKGFVDGISLEDVAGTAADTPATQS----SAQAIAALVSLGYSQSEAA 176

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+  +           +II+LALR+++
Sbjct: 177 LAIAKIDATLP----VEEIIKLALRSMA 200


>gi|331269238|ref|YP_004395730.1| Holliday junction DNA helicase RuvA [Clostridium botulinum
           BKT015925]
 gi|329125788|gb|AEB75733.1| Holliday junction DNA helicase RuvA [Clostridium botulinum
           BKT015925]
          Length = 200

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    L +DY++++   + Y IY    T++ +  I +   +++E  +R+D I +
Sbjct: 1   MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F LL ++ GVG++ A+ +LS      L +SI+ ++ K++ + PGI  KI
Sbjct: 61  YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVCSLKKSILSEDYKMLTKAPGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K   +    +  +   N       +       A+ AL+ LG+ Q +A  A
Sbjct: 121 AQRITLELKDKIEKI---YEDSLEEDNDIDNLSKNSTRKYDEALEALIALGFSQKEAEKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   +       +II+ +LR +
Sbjct: 178 LKDIDITKG----IEEIIKDSLRYL 198


>gi|282860281|ref|ZP_06269351.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010]
 gi|282586955|gb|EFB92190.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010]
          Length = 205

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG +  L     +++ +GV Y I   + T S +    D   L++     T  R D
Sbjct: 1   MIEYIKGELAELTPTLAVVEARGVGYAINISLNTYSAIQGKND-IKLYIHEAIVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GFLS  +R  + LL +V GVGA  A  +LS +T +EL   I   + K++  + GI
Sbjct: 60  SYTLYGFLSKQERSLYRLLITVSGVGANTARMILSSLTPSELCNVIANGDEKMLKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K +        D   +N   A      +    A+SAL+ LG+    
Sbjct: 120 GLKTAQRIIVDLKDKIMQSGI---ADELHINSSSASSNINTAVKDEALSALIMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L ++  +    Q+++LAL+ I
Sbjct: 177 SAKVVVSILTEQPELP-VEQVVKLALKMI 204


>gi|257876215|ref|ZP_05655868.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC20]
 gi|325567287|ref|ZP_08143954.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           casseliflavus ATCC 12755]
 gi|257810381|gb|EEV39201.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC20]
 gi|325158720|gb|EGC70866.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           casseliflavus ATCC 12755]
          Length = 196

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  ++  Y++++  G+ Y I       S  GK+     +++   +R+D   L
Sbjct: 1   MYEYIIGKVTDIFPAYIVVETHGIGYQIAF-GNPYSFSGKLNQEVKIYLHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   +Q F+ L SV G+G + A+ +++    T L+ ++   +   + + PG+  K 
Sbjct: 60  YGFATIEGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L            +    +    +    A+ AL  LGY + +   A
Sbjct: 120 AQQMILDLKGKVAELVG---------EEAIVPLSVATTALDEAMEALKALGYSEKEVKKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        D  + +R ALR +
Sbjct: 171 EKQLAANTTKSTD--EYLREALRLM 193


>gi|70726280|ref|YP_253194.1| Holliday junction DNA helicase RuvA [Staphylococcus haemolyticus
           JCSC1435]
 gi|90135915|sp|Q4L6Y7|RUVA_STAHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68447004|dbj|BAE04588.1| holliday junction DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 201

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 97/206 (47%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  L+  +V+++ + GV Y I  P  +      +     ++    +R+D   
Sbjct: 1   MYAYIRGKLTQLFPTHVVVESINGVGYEIQTP-NSYRFQKYLEKELVIYTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+++ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K
Sbjct: 60  LYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKMAIENENDAYLTKFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK      + ++    +        +  +    A+ AL  LGY + + + 
Sbjct: 120 TARQIVLDLKGKV----QITRETTETLLSMNEENSNSENLVKEALLALEALGYSKREISK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  VL K        + ++L L+ +
Sbjct: 176 -VEKVLNKS-TFDSVDEAVKLGLKTL 199


>gi|323142288|ref|ZP_08077120.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT
           12067]
 gi|322413172|gb|EFY04059.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT
           12067]
          Length = 200

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG +KG ++ L  D  +I+   GV Y ++ P   L+ L + G    L + T +R+D I 
Sbjct: 1   MIGSLKGTVDSLGIDNCIIETAGGVGYRVFMPAAQLAQLTQ-GASVRLHIHTAVREDAIV 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFLS      F LL ++ GVG ++A+G+LS +       ++  ++ KV+ ++PGI  K
Sbjct: 60  LYGFLSREYYDLFELLLTISGVGPKMALGILSAVKPDAFYLAVQSRDIKVLTKLPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K   +++            +A           AI AL +LGY   +   
Sbjct: 120 TAERLLLELKDKVGPVAAESADSFG-----EAVAAGGSGAVAEAIEALASLGYSNSEIMP 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +  +  +        +I++ ALR +
Sbjct: 175 VIKKI--EGAETKTSEEILKQALRLM 198


>gi|157827122|ref|YP_001496186.1| Holliday junction DNA helicase RuvA [Rickettsia bellii OSU 85-389]
 gi|166200254|sp|A8GWC2|RUVA_RICB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157802426|gb|ABV79149.1| Holliday junction DNA helicase motor protein [Rickettsia bellii OSU
           85-389]
          Length = 203

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++  Y+DYV+IDV GV Y ++   +TLS L + G+   LF+ETH+R+D I L
Sbjct: 1   MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++ +F LLQSV G+G R+A+ +LS +T T++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLSLEEKSFFNLLQSVNGIGTRMALSILSALTPTDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  K   +SS      + +          P  +   I AL+N+G+ + +A  A
Sbjct: 120 AERIVRELSDKVAKISS----SSAAIKDSLNIKGITPVASSEVIKALINMGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ K   I+ D ++IR AL+
Sbjct: 176 VQEIITKNPEISID-ELIRTALK 197


>gi|242242914|ref|ZP_04797359.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
 gi|242233629|gb|EES35941.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
          Length = 200

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++  G+ Y I  P  +      +     ++    +R+D   L
Sbjct: 1   MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + Q PGI  K 
Sbjct: 60  YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPYEVKLAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK     ++ +++   + + Q +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKV----TITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELSKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+ K   N  D++  +++ L+ +
Sbjct: 176 EKSLNKHNVNSVDEA--VKIGLQTL 198


>gi|157803866|ref|YP_001492415.1| Holliday junction DNA helicase RuvA [Rickettsia canadensis str.
           McKiel]
 gi|166200255|sp|A8EZ47|RUVA_RICCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157785129|gb|ABV73630.1| Holliday junction DNA helicase motor protein [Rickettsia canadensis
           str. McKiel]
          Length = 204

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 119/203 (58%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G  +   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKADSQGDDYVIIDVNGVGYLVYASGKTLDKLVE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T  ++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTRMALSILSNLTPDDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +SS      S +          P  +   + AL+NLG+ + +A   
Sbjct: 120 AERIVLELKDKVTKISS-----SSAIKDSLNIKNITPVTSNEVMKALINLGFSRFEAQNV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 175 VQGIITQNPKISID-ELIKTALK 196


>gi|148653226|ref|YP_001280319.1| Holliday junction DNA helicase RuvA [Psychrobacter sp. PRwf-1]
 gi|172048524|sp|A5WFC8|RUVA_PSYWF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148572310|gb|ABQ94369.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter sp.
           PRwf-1]
          Length = 210

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 4/209 (1%)

Query: 1   MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +  L      L+   GV Y +  P+     L ++    +L+   H+R+D   
Sbjct: 1   MIGLIEGRVCHLSAPVACLMTASGVGYEVELPLPDFCQL-QLEAMASLWTHLHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVGA++A+ ++S  +ATEL   I  +N   + ++PGI  K
Sbjct: 60  LYGFLHPTERDVFRQLIRVNGVGAKMALAMMSTFSATELKHCIDTENDAALTRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELKGK   + S +        +      S         SAL++LGY   +A  
Sbjct: 120 TAQRLLIELKGKFDHIQSDMSLLTEVEQQIGIAANSEGVILAEVESALISLGYRDKEAQQ 179

Query: 180 AVVSVLKKEKN--IADDSQIIRLALRAIS 206
           A+ +  + +    + D   +++L L+ +S
Sbjct: 180 AIKAARETDAGQQLVDTQSLLKLTLKQLS 208


>gi|38233961|ref|NP_939728.1| Holliday junction DNA helicase motor protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|81564836|sp|Q6NGX4|RUVA_CORDI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|38200223|emb|CAE49907.1| holliday junction DNA-helicase [Corynebacterium diphtheriae]
          Length = 203

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +E +     +I+  GV Y +     TL  L + G+   +     +R++   L
Sbjct: 1   MIVSLRGTVESIGLGSAVIECNGVGYEVLAAPTTLGRLTR-GEQARVLTTMVVREESQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  R+ F+LLQSV G+G ++A+   S  T  ++   I   ++K + +IPG+  ++
Sbjct: 60  YGFTDDASRRMFVLLQSVSGLGPKLALAAQSVFTTEDIARHIAGGDAKALQKIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +  +      +    + Q  I    +     + ALV LG+ +  A   
Sbjct: 120 AERMIVDLKDKVVGFND----GIPAAAQPQLSIAVDQAVQEQVLEALVGLGFSEKIALPV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +  VL+    +   SQ +R AL  +  
Sbjct: 176 LSRVLRDSPEL-SKSQALRAALSELGT 201


>gi|320109383|ref|YP_004184973.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4]
 gi|319927904|gb|ADV84979.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4]
          Length = 198

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y +   + T S L   G    LF+ T +R+D I L
Sbjct: 1   MIAHLRGRLLAKSPNQAIVECGGVGYDVAISVTTFSALKSEGAEVELFINTQVREDAIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L +V G+G ++ + VLS I A  LV +I   +   + +IPGI  K 
Sbjct: 61  FGFAEMEEKRLFEKLITVSGIGPKLGITVLSGIAAPLLVAAIKGSDHATLQKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   + S    D                   + +SAL NLGY +  A  A
Sbjct: 121 AERVVVELKDKLEDMISAPSADPGFHAGPAG---------DDVLSALANLGYQKAAAQRA 171

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           + + +++E  +  +  ++ R A+ A+
Sbjct: 172 IQTAIEQEPALRTEFEKLFRAAMGAM 197


>gi|160942948|ref|ZP_02090187.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445849|gb|EDP22852.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii
           M21/2]
          Length = 203

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V++   GV Y   CP      L  +G   TL+    + ++ + L
Sbjct: 1   MIYCLTGKIVKKSLNAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  +  F +L +V GVG +V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       V           A        +  AI+ALV+LGY Q +A  A
Sbjct: 121 AQRIVLELKDKVAK--GFVDGISLEDVAGSAADTPATQSSAQAIAALVSLGYSQSEAALA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +           +II+LALR+++
Sbjct: 179 IAKIDAALP----VEEIIKLALRSMA 200


>gi|312129386|ref|YP_003996726.1| holliday junction DNA helicase subunit ruva [Leadbetterella
           byssophila DSM 17132]
 gi|311905932|gb|ADQ16373.1| Holliday junction DNA helicase subunit RuvA [Leadbetterella
           byssophila DSM 17132]
          Length = 191

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 12/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +IDVQGV Y++   ++T + L  +G+ C LF    +R+D   L
Sbjct: 1   MIAHLNGILSEKEPAQAVIDVQGVGYLLKISLQTSAALPAVGEKCKLFCLQIIREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV G+G  +A+  LS +T  E+V++I+ ++ K I  I GI +K 
Sbjct: 61  YGFATREERVLFEHLISVSGIGPAIALVFLSSMTGPEIVQAIVSEDVKTIQGIKGIGLKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R + ELK K           +                 + A++ALV LG  +  A  +
Sbjct: 121 AQRAVIELKDKLKKEPMATTGTLPA------------RIRMEALAALVTLGIPKATAEKS 168

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++LK+        ++I+L+LR
Sbjct: 169 VDNILKRAPADITLEEVIKLSLR 191


>gi|268608399|ref|ZP_06142126.1| Holliday junction DNA helicase RuvA [Ruminococcus flavefaciens
           FD-1]
          Length = 206

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      + +I+  GV Y       T++ LG++G    L+   ++R+D + L
Sbjct: 1   MIYSLKGKLTVKELGFAVIECGGVGYGCKTSYNTIASLGEVGSEAMLYTHLYVREDAVEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F LL SV GVG + A+ +LS +T  +    +   +SK   +  GI  K 
Sbjct: 61  FGFATQQELSCFRLLISVSGVGPKAAISILSDVTPEKFAFLVASGDSKSFTRTKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  S S              +      S    A+ AL+ LGY Q +    
Sbjct: 121 AQRIVLELKDKISSESISGSVSGDAAAFAPSSAAPSDS-VSEALEALMVLGYTQGE---- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
              +L K         +I+  LR ++ 
Sbjct: 176 TAPILGKLDPSMSTQDLIKETLRLLTA 202


>gi|164687538|ref|ZP_02211566.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM
           16795]
 gi|164603312|gb|EDQ96777.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM
           16795]
          Length = 197

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T   + K G    +F +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYLDRIVLENNGIGYEINVSSFTAQSVQK-GKDAKIFTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  + + F LL SV  +G +V +G+LS  T  +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFASRKELEMFKLLTSVSKIGPKVGLGILSCATPPQLSAYILSEDIAKLSKCPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    S+  +  +         +         A+ AL+ LGY   +A  A
Sbjct: 120 AERIILELKDKVDKESAEFEATLFNQAPTGLEL-------DEAVEALLALGYSNVEAKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    K   +      +I+ AL  +
Sbjct: 173 VQKFKK---DGLKTEDLIKKALTYL 194


>gi|157828405|ref|YP_001494647.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933115|ref|YP_001649904.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str.
           Iowa]
 gi|166200256|sp|A8GRW4|RUVA_RICRS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045764|sp|B0BXC2|RUVA_RICRO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157800886|gb|ABV76139.1| Holliday junction DNA helicase motor protein [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908202|gb|ABY72498.1| Holliday junction DNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 204

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGTLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS      + + +        P  +   I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197


>gi|154686915|ref|YP_001422076.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens
           FZB42]
 gi|308174476|ref|YP_003921181.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|166230516|sp|A7Z769|RUVA_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154352766|gb|ABS74845.1| RuvA [Bacillus amyloliquefaciens FZB42]
 gi|307607340|emb|CBI43711.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328554396|gb|AEB24888.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens
           TA208]
 gi|328912801|gb|AEB64397.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           amyloliquefaciens LL3]
          Length = 201

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y ++ P   +    K+ +  T+F   H+++D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIY---KVSNQETIFTYHHIKEDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L       ++E+I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   +  ++   ++ +       +    A+ AL  LGY + +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIDNLFN-HEARIEKQEAETALDEALEALRVLGYAEKEIKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  KE+      Q ++ AL+ +
Sbjct: 177 LPHL--KEETALSTDQYVKKALQKL 199


>gi|84501645|ref|ZP_00999817.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis
           HTCC2597]
 gi|84390266|gb|EAQ02825.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis
           HTCC2597]
          Length = 220

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I+    D+VLIDV+GV Y+++   RTL+ L   G+   L+ E  +R+D ++L
Sbjct: 1   MIGRLAGRIDMRGPDHVLIDVRGVGYVVFVSDRTLATLPGAGEAAALYTELIVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++++WF LL SVQGVGA+ A+ +L  + A  L  +I L +   +    GI  K 
Sbjct: 61  YGFPTLVEKEWFRLLTSVQGVGAKGALAILGALGAEGLGRAIALGDQASVKAAKGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------------MPSFAINAISAL 167
           A RI+ ELK KA ++ ++     +     +  +                 S    A+SAL
Sbjct: 121 AQRIVLELKDKAPAVMAMGGAAPTSAAPAETEVVEPVPAPAATAAPASTASAQAEALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGYG      A V+    E   AD + +IR ALR ++
Sbjct: 181 GNLGYGPS-EAAAAVAEAAGETPRADTAALIRSALRRLA 218


>gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072547|gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D QGV Y +  P+ T   L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + GVGAR A+ +LS ++  +L +++ LQ +  + ++PGI  K 
Sbjct: 61  FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +  +     +            + + ++AL+ LGY   +AT A
Sbjct: 121 AER------------LLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V K     +  S  I+LAL+A+S
Sbjct: 169 MKQVPKD----STVSDGIKLALKALS 190


>gi|332826883|gb|EGJ99683.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 193

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    V ++  GV Y I   + T S L        LF+   +R+D  +L
Sbjct: 1   MIDYIKGEITELTPASVTLETYGVGYFISISLNTYSNLTGKKS-AQLFIYEAIREDAHQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ FMLL SV G+GA     +LS +   EL   I   NS ++  + GI +K 
Sbjct: 60  FGFFDKQERELFMLLISVSGIGASTGRMILSSMNTQELANVIASGNSDMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   +S + Q DM                   A++ALV LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKI-KVSGIEQVDMFASGHPSG---------EEAVAALVMLGFTQQASQKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK +K  +   QII+ AL+ +
Sbjct: 170 VAKILK-DKADSTVEQIIKTALKML 193


>gi|67458996|ref|YP_246620.1| Holliday junction DNA helicase motor protein [Rickettsia felis
           URRWXCal2]
 gi|75536568|sp|Q4ULW8|RUVA_RICFE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67004529|gb|AAY61455.1| Holliday junction DNA helicase RuvA [Rickettsia felis URRWXCal2]
          Length = 203

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 122/203 (60%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DY++IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKIDSQGDDYIIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS        +          P  +   I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISS----GSVIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 176 VQGIIIQNPEISID-ELIKTALK 197


>gi|313203476|ref|YP_004042133.1| holliday junction DNA helicase subunit ruva [Paludibacter
           propionicigenes WB4]
 gi|312442792|gb|ADQ79148.1| Holliday junction DNA helicase subunit RuvA [Paludibacter
           propionicigenes WB4]
          Length = 196

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L   YV+++  G+ Y I+  + T S LG+      L+V   +R+D   L
Sbjct: 1   MIDYIKGEISELTPAYVVLETAGIGYFIHITLPTFSFLGE-HTSAKLYVYESIREDAHVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +RQ F+LL SV G+GA  A  ++S  +A E+ + I   N   +  I GI  K 
Sbjct: 60  YGFRLQSERQLFLLLISVSGIGANTARMIMSSYSAQEIQDMIASGNVSALNAIKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K +  +   +      N               A+SALV LG+    +   
Sbjct: 120 AQRIIVDLKDKIMKSAGGSEIISLVPN-------VQNEKKEEAVSALVMLGFAASASQKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +++++  +    Q+I+LAL+ +
Sbjct: 173 VDKIVQEQPALK-VEQLIKLALKMM 196


>gi|297626360|ref|YP_003688123.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922125|emb|CBL56693.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 203

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 106/208 (50%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +  +  ++++IDV GV + +     T S L + G   T+F    +R+D ++L
Sbjct: 1   MIAQLHGKVAAIGANWLVIDVAGVGFQVSTTPNTTSAL-RTGQTATVFTSLVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F L ++  GVG ++A+ ++S +T  E   ++  ++   +  +PGI  K 
Sbjct: 60  YGFGGTDERDCFELCRTASGVGPKLALAIVSVLTPEEFATAVRTEDLPRLCTVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK +  +L       ++  N   +     P++    ++ L +LG+    A  A
Sbjct: 120 AQKIVIELKDRVDALF------VAPTNGSASVAPVTPAWQEQVMAGLESLGWSSRDAEAA 173

Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206
             +V  L +E   A  + +++ AL +++
Sbjct: 174 CETVAPLAEEDPEATVAALMKAALASLA 201


>gi|291519343|emb|CBK74564.1| Holliday junction DNA helicase, RuvA subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 205

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  + E+ V+++  GV Y +   + T+  L  IG    L  +   ++D + L
Sbjct: 1   MFAYVRGTLSDIDENIVIVENNGVGYCLSSSMNTIRQLPAIGSEVKLNTKLIPKEDSLTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    + + F LL SV G+G + A+ +LS +T +++  ++  +++K  A  PGI  K 
Sbjct: 61  YGFYDKEELKMFELLLSVSGIGPKGALAILSSMTVSDIQFAVAGEDAKAFAACPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R + +LK K   + +   +  S ++ +++    + S     + ALV LGY    A  A
Sbjct: 121 AERAIIDLKDKVDIIGAFEAKITSDLSGKKSASPGI-SVKEEVLEALVALGYSASNAARA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   E       Q++   L+ +S
Sbjct: 180 LDKMAITE--STTTEQLLGDTLKQMS 203


>gi|296137136|ref|YP_003644378.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12]
 gi|295797258|gb|ADG32048.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12]
          Length = 190

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ TL  L  +G   TL + T +R+D   L
Sbjct: 1   MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAVGHAVTLLIHTVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+G R+A+ VLS ++ +E+ +++  Q++    ++PGI  K 
Sbjct: 61  YGFATAGERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +    A + + AL+ LGY + +A   
Sbjct: 121 AER-------------LLLELKGKLGADLGGAATAAAGSASDVLQALIALGYSEREA--- 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +  K           IR AL++++
Sbjct: 165 -AAAAKALPEGCSVDDGIRQALKSLA 189


>gi|77464125|ref|YP_353629.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides 2.4.1]
 gi|126462968|ref|YP_001044082.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17029]
 gi|90135713|sp|Q3J0F6|RUVA_RHOS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200251|sp|A3PLU4|RUVA_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77388543|gb|ABA79728.1| Holliday junction DNA helicase subunit RuvA [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104632|gb|ABN77310.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17029]
          Length = 224

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+Y   RTL+ +  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----------------KEQAHICSMPSFAINAI 164
           A R++ ELK KA +L ++     +                   K +A     PS   +A+
Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPEPGTSSGSRRKTRAPEPPRPSHTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGY    A  AV     +  + AD + +IR AL+ ++
Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221


>gi|299141888|ref|ZP_07035023.1| holliday junction DNA helicase RuvA [Prevotella oris C735]
 gi|298576739|gb|EFI48610.1| holliday junction DNA helicase RuvA [Prevotella oris C735]
          Length = 205

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG +  L     +++  GV Y +   + T S + +      L+V     T  R D
Sbjct: 1   MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGI-QGKKAVKLYVHEALTTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF++  +R+ + LL +V GVGA  A  +LS ++  EL  +I   + K+I  + GI
Sbjct: 60  SFTLYGFVNKQERELYRLLITVSGVGANTARMMLSSMSPAELCNAIANGDEKMIKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A R++ +LK K ++       D   V  +++ I    +    A++AL  LG+    
Sbjct: 120 GLKTAQRVIVDLKDKIMASGI---ADELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
               VV++L+K+ ++    Q+++ AL+ +
Sbjct: 177 VAKVVVAILQKQADMP-VEQVVKEALKQL 204


>gi|261368084|ref|ZP_05980967.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM
           15176]
 gi|282570074|gb|EFB75609.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM
           15176]
          Length = 201

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D  +I   GV Y +  P  T   L   G   T++   ++ ++ + L
Sbjct: 1   MIYCLTGKILKKTLDTAVISCGGVGYAVQIPATTGEALPAPGQEGTVYTVMNVSENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  R  F +L +V GVG +  + +LS ++  ++  +    + K   +  G+  K+
Sbjct: 61  YGFATEEQRDCFKMLTAVSGVGPKAGLAILSVMSPEKIALAASSGDHKAFTKASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K          D +             S    A++ALV+LGY    A  A
Sbjct: 121 AQRITLELKDKVGK----GLADGTGFGGADLSAPMPSSAPAQAVAALVSLGYTPSDAAAA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V            II++ALR++S
Sbjct: 177 VARV----DETLSVQDIIKVALRSLS 198


>gi|332530327|ref|ZP_08406273.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC
           19624]
 gi|332040313|gb|EGI76693.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC
           19624]
          Length = 194

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       VL+D  GV Y +   + T   L  +G   TL     +R+D   L
Sbjct: 1   MIGRLSGTLIAKNPPEVLVDCHGVGYEVQVSMNTFYHLPVLGQPVTLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F  L  V GVG R A+ VLS ++  EL +++  Q    + + PG+  K 
Sbjct: 61  YGFGEDAERAAFRELIKVSGVGPRTALAVLSGMSVAELAQAVTQQEMGRLLKAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R         + L    +            + +      +   AL+ LGY   +A   
Sbjct: 121 AER---------LLLELKGKLGADIGVAGPGAMAAGHDAQADIQQALLALGYSDKEA--- 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             + LK      + S+ IRLAL++++
Sbjct: 169 -AAALKALPKDVEVSEGIRLALKSLA 193


>gi|281426165|ref|ZP_06257078.1| holliday junction DNA helicase RuvA [Prevotella oris F0302]
 gi|281399741|gb|EFB30572.1| holliday junction DNA helicase RuvA [Prevotella oris F0302]
          Length = 205

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG +  L     +++  GV Y +   + T S + +      L+V     T  R D
Sbjct: 1   MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGI-QGKKAVKLYVHEALTTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF++  +R+ + LL +V GVGA  A  +LS ++  EL  +I   + K+I  + GI
Sbjct: 60  SFTLYGFVNKQERELYRLLITVSGVGANTACMMLSSMSPAELCNAIANGDEKMIKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A R++ +LK K ++       D   V  +++ I    +    A++AL  LG+    
Sbjct: 120 GLKTAQRVIVDLKDKIMASGI---ADELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
               VV++L+K+ ++    Q+++ AL+ +
Sbjct: 177 VAKVVVAILQKQADMP-VEQVVKEALKQL 204


>gi|15892454|ref|NP_360168.1| Holliday junction DNA helicase motor protein [Rickettsia conorii
           str. Malish 7]
 gi|20140118|sp|Q92I89|RUVA_RICCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15619609|gb|AAL03069.1| holliday junction DNA helicase RuvA [Rickettsia conorii str. Malish
           7]
          Length = 203

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGQLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS      + + +        P  +   I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197


>gi|256825358|ref|YP_003149318.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius
           DSM 20547]
 gi|256688751|gb|ACV06553.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius
           DSM 20547]
          Length = 209

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 6/211 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I  +  D+++++V GV   +  P +  + + + G    L     +R+D + L
Sbjct: 1   MIASLSGTITHVGLDHLVVEVGGVGMRVLVPPQVAAEV-RTGQEARLETSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    R+ F  +QSV GVG R+A+ +++ ++  EL  ++  ++   +  +PGI  K 
Sbjct: 60  FGFLDADTREVFETVQSVSGVGPRLALALVAVLSPAELSRAVHTEDLAALTSVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL GK  +         +   +      S P++A     AL  LG+   QAT A
Sbjct: 120 AQRLVLELVGKLPA-DLGGGAAPTTTEQSAGGDPSEPAWAPQVRDALEGLGWNTAQATKA 178

Query: 181 ----VVSVLKKEKNIADDSQIIRLALRAISC 207
               V    +      +   ++R ALR  + 
Sbjct: 179 TRTVVEQHAQDTGPPPELPVLLREALREAAS 209


>gi|118444147|ref|YP_877905.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT]
 gi|118134603|gb|ABK61647.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT]
          Length = 215

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 107/204 (52%), Gaps = 7/204 (3%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              IKG   GL +DY++++   + Y IY    T++ +  I +   +++E  +R+D I L+
Sbjct: 17  FEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMAGMPNINEKVKIYIEQIVREDFIGLY 76

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GFL + +R  F LL ++ GVGA+ A+ +LS    + L  +I+ ++ K++ + PGI  KIA
Sbjct: 77  GFLREDERAMFNLLLTISGVGAKAALSLLSISNVSSLKVAIMTEDYKMLTRAPGIGKKIA 136

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI  ELK K   + +   +D   ++K              AI ALV LG+ Q +A  A+
Sbjct: 137 QRITLELKDKIEKIYAEDIEDGENISKLSMDTGRK---YDEAIEALVALGFTQKEAEKAL 193

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            ++           QII+ +LR +
Sbjct: 194 KNIDINN----TIEQIIKDSLRYL 213


>gi|302874957|ref|YP_003843590.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
 gi|307690425|ref|ZP_07632871.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
 gi|302577814|gb|ADL51826.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
          Length = 194

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+ +DY++I+  G+ Y I+    T++ L  I     ++++  +R+D I L
Sbjct: 1   MYEYIKGIYKGIKKDYLIIENNGIGYKIFTSGGTIAALPSIDKEVFIYLKQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F +L ++ GVG + A+ +LS  T   L  +I   +   I + PGI  K 
Sbjct: 61  YGFATQEELELFTMLLNINGVGTKAALSLLSIGTVNNLKYAIATSDENFITKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      +     + +            +   A+ AL+ LGYG+ +A  A
Sbjct: 121 AQRIILELKDKLSKEVPLSHTSENIITNV---------YVDEALEALIALGYGEKEAEKA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V     +     +II+  L+ +
Sbjct: 172 IANV----NHNMSIEEIIKSCLQLL 192


>gi|85374915|ref|YP_458977.1| Holliday junction DNA helicase RuvA [Erythrobacter litoralis
           HTCC2594]
 gi|123293674|sp|Q2N811|RUVA_ERYLH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84787998|gb|ABC64180.1| probable holliday junction DNA helicase protein [Erythrobacter
           litoralis HTCC2594]
          Length = 200

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 118/204 (57%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y+++C  ++L+ LG++G+ CT++ +  + ++ +RL
Sbjct: 1   MIAKLKGLLDETGTDWAVIDVSGVGYLVHCSSKSLAALGEVGEACTVYTDLQVSENDMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG++VA+ +LS ++  E+  +    ++ ++A+  G+  K+
Sbjct: 61  LGFAEASERDWFRLLTQVQGVGSKVALAILSALSTEEVQTACANGDAAMVARAQGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +L S         N            + +A+SAL NLG+    A  A
Sbjct: 121 AGRIVNELKDKAGALPSAPGGAAMAANP-------AGGASADAVSALENLGFKPAIAARA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +   +    A +S++IR+AL+ 
Sbjct: 174 VATAQGELGEGASESELIRVALKR 197


>gi|189502747|ref|YP_001958464.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|229470527|sp|B3EU33|RUVA_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189498188|gb|ACE06735.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 194

 Score =  211 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G+I       +++DV G+ Y +   ++T   L  I   C +F   H+ QD   L
Sbjct: 1   MIAYIQGSITYKSPTQLIVDVGGIGYELQISLQTYDSLKDIAASCKIFTYLHITQDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++Q F+ L SV G+G RVA+ +LS +T   L ++I+  ++  +  + GI  K 
Sbjct: 61  YGFSTIEEKQCFLQLLSVNGIGPRVAITILSALTPEALQQAIMTHDTITLQAVKGIGQKA 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+GK   + +++                  +    A++AL  LG  +  A   
Sbjct: 121 AQRIILELQGKVGKVGNMLS----------LQPSGQEAIYQEALAALSKLGIHKSTAEKT 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++LK+ +       +I+LAL+
Sbjct: 171 VAAILKEHQGEITVESLIKLALK 193


>gi|220912786|ref|YP_002488095.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus
           A6]
 gi|254766940|sp|B8H9D7|RUVA_ARTCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219859664|gb|ACL40006.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus
           A6]
          Length = 213

 Score =  211 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +ID+ G    +Y   +TLS L  +G+   +F    +R+D + L
Sbjct: 1   MISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSRL-HVGEEGKVFTSLIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R+ F +L SV GVG R+A+ VL+      +  +    ++K   ++PGI  K+
Sbjct: 60  FGFADDDEREVFEVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDNKTFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +   +             A   +  S+    ++A+ +LG+ +  A+ +
Sbjct: 120 AGRIVLELAGKLVPHGTAPAA---------ATTAAEASWKPQVVAAMTSLGWSEKDASAS 170

Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205
           +   L  E  ++   +  +I+R  LR +
Sbjct: 171 IDKALADEPEVSFRGNVPEILRTTLRWL 198


>gi|282880373|ref|ZP_06289084.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS
           5C-B1]
 gi|281305729|gb|EFA97778.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS
           5C-B1]
          Length = 204

 Score =  211 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  I+G +  L     +++  G+ Y +   + T S + +      L+V     T  R D
Sbjct: 1   MIEYIRGELTDLTPAQAVLEAAGIGYSLNISLNTYSAI-QGKKEVKLYVHESLVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
               +GF S  +R  + +L +V GVGA  A  +LS I+  EL   I   + +++  + GI
Sbjct: 60  NFTFYGFYSKQERDLYRMLITVSGVGANTARMILSAISPAELCNVIANGDERMLKSVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K +S     +  +S    +Q            A+SAL  LG+    
Sbjct: 120 GLKTAQRIIVDLKDKIVSSGIATELHVS----DQPQNMVHSGIRDEAVSALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLAL 202
           +   V S+LK E +     Q+++LAL
Sbjct: 176 SAKVVESILK-ESDSMPVEQVVKLAL 200


>gi|257063440|ref|YP_003143112.1| Holliday junction DNA helicase, RuvA subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791093|gb|ACV21763.1| Holliday junction DNA helicase, RuvA subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 197

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G + G   D   I+V GV + +  P   L+ L + G+   +     +R+D + L
Sbjct: 1   MIAFLNGRVAGHTTDTAFIEVNGVGFAVGMPASDLAKLPERGEEVLVHTYLAVREDAMAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++++F  L  V GVG +VA+  LS     EL  +I   + K ++ IPG+  K 
Sbjct: 61  YGFLTQDEKRFFEKLIGVSGVGPKVALAALSVYKPEELANAIAAGDVKAVSMIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKG           D +  +               A  AL+++G+   +A  A
Sbjct: 121 AQRMILELKG--------SFSDENMQSLFDQETAEATRRLEGAREALLSMGFSSAEADLA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +    ++   +  DS +I+ ALR +  
Sbjct: 173 LKDAPEE---LHTDSALIQYALRRLGS 196


>gi|291513714|emb|CBK62924.1| Holliday junction DNA helicase subunit RuvA [Alistipes shahii WAL
           8301]
          Length = 193

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y +IDV GV Y ++  + T S +        L+V   +R+D   L
Sbjct: 1   MYEYIKGTVAEVAPAYAVIDVGGVGYYLHISLETYSAIEHE-TETRLYVHYVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F LL SV GVG   A  +LS  +  EL   I   N+ ++  + G+ +K 
Sbjct: 60  YGFSTKAERELFRLLISVSGVGGNTARMILSTYSPRELQGIITAGNAVLLKNVKGLGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL GK           M+    +             A++AL  LG+ +  A   
Sbjct: 120 AQKIIVELSGKL----------MAPGADDGGAQPGAGGSFDEALAALSMLGFARAPAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VL++    A   ++IR+AL+ +
Sbjct: 170 LRGVLRESP-AAPVEELIRMALKKL 193


>gi|71065275|ref|YP_264002.1| Holliday junction DNA helicase RuvA [Psychrobacter arcticus 273-4]
 gi|90135656|sp|Q4FTU0|RUVA_PSYA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71038260|gb|AAZ18568.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter arcticus
           273-4]
          Length = 207

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   G+ Y I  P+ +   L ++ +  +++   H+R+D   
Sbjct: 1   MIGLISGQVQYLMAPTACVMTTSGIGYDIELPLPSFCQL-RLNEQASIWTHFHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R  F  L  + GVGA++A+ +LS ++A EL   +  ++   + +IPGI  K
Sbjct: 60  LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQESETALTRIPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K  ++          +  + A I +  S       AL++LGY + +A  
Sbjct: 120 TAQRLLIELKDKLKNIEVDNSNLEFAI--QPAPISAEDSIIAEVEGALMSLGYKEKEAQQ 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
           A+ +     +  AD   +++  L+ 
Sbjct: 178 AIKAAKSNGETFADTQSLLKATLQQ 202


>gi|315303293|ref|ZP_07873928.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596]
 gi|313628340|gb|EFR96838.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596]
          Length = 201

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIITTITPEYIVVETGQIGYQI-ITGNPFSFQHLEGTETQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK +    VV  D+     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGKLV---DVVTSDIVYNTPENDIVSGLAPALEEAVLALEALGYSSRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++K+E   +D    I+LAL+ +
Sbjct: 177 IPKLVKEEDLTSD--AYIKLALKLM 199


>gi|189499398|ref|YP_001958868.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides
           BS1]
 gi|229560017|sp|B3ELQ8|RUVA_CHLPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189494839|gb|ACE03387.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides
           BS1]
          Length = 200

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  +I+V GV Y++     T   L + G    +    H+++D ++L
Sbjct: 1   MFTYFRGELIEASPDEAVIEVSGVGYLLSISATTYRQLPEPGREVLVLAHLHVKEDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL + +RQ F LL S+ GVG ++A+ +LS +   E+ E+I+    + + +I G+  K 
Sbjct: 61  FGFLEEEERQLFRLLLSISGVGPKLALAILSGLQVHEIQEAIVSNMPERLFEITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + L             +     S  S   +A++ALV LG+ +  A  A
Sbjct: 121 AARIVLELRDRILKL-------RPSGGTKSVSRLSESSMRDDAVNALVTLGFLRSVAQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V   L   +N      ++R AL
Sbjct: 174 VTESLTSLRN-PQVEDLVRDAL 194


>gi|114765389|ref|ZP_01444504.1| Holliday junction DNA helicase motor protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542232|gb|EAU45262.1| Holliday junction DNA helicase motor protein [Roseovarius sp.
           HTCC2601]
          Length = 224

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G IE   ED++LIDV+GV Y++YC  R L+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIEYKGEDHLLIDVRGVGYVVYCSDRVLAGLPGPGEAAALYTDLMVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++++WF LL +VQGVGA+ ++ +L  +    +  +I L +   I    GI  K 
Sbjct: 61  YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDGTAIKAAKGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS----------------MPSFAINAI 164
           A R++ ELK KA  + ++     +    +     S                       A+
Sbjct: 121 AQRVVNELKDKAPMVMAMGAGPTASPGDDVLEDPSPAPAARRAPAPRPAPAAAPAQSEAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGY   +A  AV          A  +++IR AL+ ++
Sbjct: 181 SALSNLGYAPGEAAGAVAQAAGDLPE-ATTAELIRAALKLLA 221


>gi|289209177|ref|YP_003461243.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix]
 gi|288944808|gb|ADC72507.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix]
          Length = 201

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     + V+ID  GV Y +  P+ TL+ L + G    L     +R+D  +L
Sbjct: 1   MIARLEGTLISREVNGVVIDAGGVGYEVEVPLSTLAALPEPGATVVLTTHLVVREDAHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   DR  F  L  V G+GA++A+ +LS     EL   I   +   +A++PGI  + 
Sbjct: 61  FGFMHKRDRDLFRRLIRVNGIGAKLALAMLSTYAGDELAGLISGGDVTGLAKVPGIGKRT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  +   +        +    +        +    A++AL +LGY +  A   
Sbjct: 121 AERVVLELGERLAEMGFAAAPGGADAGAD----IPGAAMDGEALAALESLGYPRASAEKM 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +V  +  +      ++RLALRA
Sbjct: 177 VAAVRDQADS---VESLVRLALRA 197


>gi|323341472|ref|ZP_08081713.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           ruminis ATCC 25644]
 gi|323091083|gb|EFZ33714.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           ruminis ATCC 25644]
          Length = 203

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  ++  Y++++  G+ Y+I           +      +++   +R+++I L
Sbjct: 1   MYEYLIGTITQVFPAYIVVENNGIGYLINVANPFRFKSDETKQE-KIYLHQIVRENEIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L SV G+G + A+ +L+       V ++   +   + + PGI  K 
Sbjct: 60  YGFSDFNEKQLFLKLISVSGIGPKSALAILANEDHNGFVSAVNNDDDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L S   + +      +        +   A+ AL+ LGY + +    
Sbjct: 120 AKQIILDLKGKLGGLES--GKPLKGQQDLEIVAEQTSPYLKEALEALLALGYTKTEVKKT 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +L  + +  D  + +R ALR +
Sbjct: 178 GRKLLDFKGDSTD--EYLRQALRLM 200


>gi|189345865|ref|YP_001942394.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245]
 gi|229560015|sp|B3EFD2|RUVA_CHLL2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189340012|gb|ACD89415.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245]
          Length = 203

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 99/202 (49%), Gaps = 5/202 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  ++DV G+ Y       T   L   G+   L+    +++D   L
Sbjct: 1   MFAYFRGRLTSAMPDEAVVDVSGIGYRFLVSAFTYRQLPPPGEDVLLYAHLSVKEDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +RQ F LL    GVG ++A+ VLS +   E+ E+I+    + +  I G+  K 
Sbjct: 61  YGFSSESERQLFRLLLLTTGVGPKLALAVLSGLQVHEVHEAIMANAPERLYGISGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + +S    + ++  +     +        +A++AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDRILKMSPDGGKTIASGSGGNLAL----QIKDDALNALITLGFSKPAAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  +L+   ++    ++++ AL
Sbjct: 177 VTGILEGNPSL-SVEEVVKSAL 197


>gi|197121426|ref|YP_002133377.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K]
 gi|229470528|sp|B4UFY0|RUVA_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|196171275|gb|ACG72248.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K]
          Length = 197

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I    +D+ ++DV GV Y+++    +L+ L   G+   L V TH+R+D + L
Sbjct: 1   MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++ GI  K 
Sbjct: 61  YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K ++L+       +    +               +AL+NLGY   QA   
Sbjct: 121 AERLVLELKEKLVALARAAGPARAGAEAD---------VLEQLRTALLNLGYRPPQAEG- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+          ++R AL+ +
Sbjct: 171 VAEALRDSAEGRPLDDLLREALKRL 195


>gi|188590168|ref|YP_001920351.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251779255|ref|ZP_04822175.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|229560021|sp|B2V337|RUVA_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188500449|gb|ACD53585.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243083570|gb|EES49460.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 198

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DY++I+  G+ Y I+    T+S +   G+   +++E  +R+D I L
Sbjct: 1   MYEYIKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKIYIEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F LL S+ GVGA+ A+ +LS      L  +II  + K + +  GI  KI
Sbjct: 61  YGFESLEELDMFKLLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGTGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  S      + ++C+++              A+SAL++LGY + +A   
Sbjct: 121 AGRIILELKDKLKS-----DELLNCIDEFDDVTQDNSLALSEALSALISLGYTEKEAEKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K E        II+ AL  +
Sbjct: 176 LKDVDKSE----SVENIIKSALVKL 196


>gi|93005514|ref|YP_579951.1| Holliday junction DNA helicase RuvA [Psychrobacter cryohalolentis
           K5]
 gi|123386742|sp|Q1QCY6|RUVA_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|92393192|gb|ABE74467.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter
           cryohalolentis K5]
          Length = 207

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  P+ +   L ++ +  +++   H+R+D   
Sbjct: 1   MIGLINGQVQYLMAPTACVMTTSGVGYDIELPLPSFCQL-RLNEQASIWTHFHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R  F  L  + GVGA++A+ +LS ++A EL   +   +   + +IPGI  K
Sbjct: 60  LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQDSEDALTRIPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K  ++   V         + A I +  S       AL++LGY + +A  
Sbjct: 120 TAQRLLIELKDKLKNIE--VDSSHLEFAMQPAPISAEGSIIAEVEGALISLGYKEREAQQ 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
           A+ +     +  AD   +++  L+ 
Sbjct: 178 AIKAAKSNGETFADTQSLLKATLQQ 202


>gi|294085860|ref|YP_003552620.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665435|gb|ADE40536.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 207

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +    + + +IDVQGV Y++    RT   L       T+  E  +R+D + L
Sbjct: 1   MIAQLRGILSHTADTHAIIDVQGVGYLVNISSRTQGQLAAQDGAVTVLTEMIVREDSMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F LL +VQGVGA+ AM +LS ++  +L  +I+  +  ++A+  G+  KI
Sbjct: 61  YGFHDASERDAFRLLITVQGVGAKAAMAILSVLSPADLSSAIMAGDKAMVARADGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ EL  K     S+     ++             S   +A+SAL+NLGYG+ +A  
Sbjct: 121 AQRVVNELAEKIGRFPSLGDGLTINISGVTGGEDLPGASAMGDALSALINLGYGRSEAHA 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A++ V ++  +  D S +I  ALR I
Sbjct: 181 ALLRV-QQAGDADDLSGLIAAALREI 205


>gi|297584758|ref|YP_003700538.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens
           MLS10]
 gi|297143215|gb|ADH99972.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens
           MLS10]
          Length = 208

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 11/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +  +  + + +DV GV Y+I+C          + +  T+F   H+R+D IRL
Sbjct: 1   MIEQIRGTLLYIETETITVDVHGVGYLIHC-GNPYRFQEWMNEELTVFTYQHVREDAIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +  V G+G + A+ + +     ++V +I  ++ K + + PG+  K 
Sbjct: 60  YGFRFREERKLFEKMLQVSGIGPKGALAIATSGHPGKVVAAIESEDEKFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVV------QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A +++ +LKGK   L   +      Q+ ++ V  E+  +   P     A+ AL  LGY  
Sbjct: 120 ARQMILDLKGKLGELLPDLNDHNEGQKPVNAVMNEREPVSDNPEL-DEALEALKALGYVD 178

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +    +  VL  E    D    IR AL+ +
Sbjct: 179 RELQK-IKPVLSGESMTTD--AYIRRALQEL 206


>gi|21220019|ref|NP_625798.1| Holliday junction DNA helicase RuvA [Streptomyces coelicolor A3(2)]
 gi|20455268|sp|Q9L290|RUVA_STRCO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|6822215|emb|CAB70921.1| holliday junction DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 201

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +I+V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSTGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      Q   +++ AL+ ++
Sbjct: 170 VSAVAPQAEAAGGTPQVGALLKAALQTLN 198


>gi|327314021|ref|YP_004329458.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289]
 gi|326944672|gb|AEA20557.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289]
          Length = 205

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  I+G +  L     +++ QGV Y +   + T S +        L+V     T  R D
Sbjct: 1   MIEYIRGELADLTPALAVVEAQGVGYALNISLNTYSAIQGR-TPVKLYVHEAIMTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  + LL +V GVGA +A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  SYTLYGFASRQERSLYRLLITVSGVGANIARMILSSLTPAELCNVIANGDEKMLKTVRGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPGTPAVNTAIKDEAVSALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L  + ++    Q+++LAL+ I
Sbjct: 177 SAKVVVSILTDQPDLP-VEQVVKLALKMI 204


>gi|260558373|ref|ZP_05830569.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68]
 gi|260075547|gb|EEW63853.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68]
          Length = 200

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++   + Y I           K+     ++V   +R+D   L
Sbjct: 1   MYEYLTGVVTFINPYYIVVETNSIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + A+ +++    + L++++   +   + + PG+  K 
Sbjct: 60  YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   LS      +      +            A+ AL  LGY   +    
Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEANTKDATA-----LSEAMEALSALGYSDREIKRV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  KE +     + +R AL+ +
Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197


>gi|251798377|ref|YP_003013108.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2]
 gi|247546003|gb|ACT03022.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2]
          Length = 212

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 8/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  +  +YV++DV+ V Y ++ P    +  GK G   T+++  H+R+D I L
Sbjct: 1   MIDFLRGLISHVESEYVVLDVRDVGYQVFTP-NPYAFAGKEG-TVTIYIHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++  F  L  V G+G RVA+G+L+      ++ +I  +N   + ++PGI  K 
Sbjct: 59  YGFESREEQTLFRKLLEVSGIGPRVALGILAGGRPDAVIGAIQQENIAFLTRLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174
           A R++ +LK K    ++      +        + +  +          A   L  LGY  
Sbjct: 119 AQRMILDLKDKLAGFATDAGLLAAAGLAPHQPVSAASAQQGAGTAWEEARDGLSALGYTA 178

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +   A  ++            +++ AL+ +
Sbjct: 179 AELDKAWSALAPSVTADETVDSLMKRALQQL 209


>gi|302561707|ref|ZP_07314049.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus
           Tu4000]
 gi|302479325|gb|EFL42418.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus
           Tu4000]
          Length = 201

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RVGQPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F+LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFVLLQTASGVGPRLAQAMLAVHSPDALRGAVATGDEKALTAVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              V            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAVGAPVTSGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206
           V +V    +  +      Q+++ AL+ ++
Sbjct: 170 VAAVTPQAEAAEGTPQVGQLLKAALQTLN 198


>gi|329945621|ref|ZP_08293354.1| Holliday junction DNA helicase RuvA, N terminal domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528624|gb|EGF55589.1| Holliday junction DNA helicase RuvA, N terminal domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 218

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 9/213 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L +IG+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RIGEEVLVHTELVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFTDVDERDSFRTLMSAKGVGAKLALAMLAVHTPNMLRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSS-----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A R++ ++  K   ++       +    +  +K           + + ++ALV LG+ + 
Sbjct: 120 AQRVILDVADKLGPVTGDDADTAMPAAKAIGDKGVETFSEGAQPSADVVAALVQLGWNEA 179

Query: 176 QATTAVVSV---LKKEKNIADDSQIIRLALRAI 205
            A  AV +V     +     D + ++R +LR +
Sbjct: 180 SARQAVTAVEADYAEAGENPDMAALLRASLRWL 212


>gi|257455268|ref|ZP_05620503.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60]
 gi|257447230|gb|EEV22238.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60]
          Length = 206

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +  L    V++    GV Y I  P+     + ++    TL+    +R+D   
Sbjct: 1   MIGLIQGQVHHLMAPTVVVMTTAGVGYEIEMPLNAFCQV-QLNQSVTLWTHFLVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFLS  DR+ F LL  V GVGA++A+ ++S +T  EL + ++  +   + +IPG+  K
Sbjct: 60  LFGFLSHSDREVFRLLLKVNGVGAKMALAMMSTVTVQELHQFVMNNDELALTRIPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K   L        +     +    +         + L+ LGY   +A  
Sbjct: 120 TAQRLIVELKDKIKHLGDT--SGFAPSLPLETDSGNEGIIIAEVEAGLIALGYRDKEAQA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+        +      +++ +L+ ++
Sbjct: 178 AIKLAKSAIDSPLTIQNLLKASLKNLA 204


>gi|260437054|ref|ZP_05790870.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM
           2876]
 gi|292810363|gb|EFF69568.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM
           2876]
          Length = 198

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +  +  + ++++  GV Y I  P   +  L  IG    ++   ++++D + L
Sbjct: 1   MITYIVGELTYIDNNTIILEACGVGYEITVPESVIPSLPGIGSSIKIYTYQNVKEDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F  L +V G+G + A+ +LS I+  EL  ++I  + K I   PGI  K 
Sbjct: 61  YGFLTMDDLKIFKQLITVNGIGPKGALSILSVISPDELRLAVISDDVKKIQSAPGIGSKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K              V         + S    A+SAL++LGY   ++ +A
Sbjct: 121 AQKLIIELKDKLKIED--------VVYDLHDEKDIVKSVRDEAVSALISLGYSNSESVSA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +++  E        I++ AL+ ++
Sbjct: 173 VSALVITEN--MTSEDILKQALKKLA 196


>gi|288930025|ref|ZP_06423866.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328684|gb|EFC67274.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 205

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG++  L     +I+  GV Y +   + T + + +  D   LFV     T  R D
Sbjct: 1   MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYTAI-QGKDKVKLFVHEALVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R+ + LL SV GVGA  A  +LS ++  EL   I   + K++  + GI
Sbjct: 60  SYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPAELCNVIAAGDDKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A RI+ +LK K +  +S V Q++S      A + +  +    A+ AL  LG+    
Sbjct: 120 GAKTAQRIIVDLKDKIV--TSGVAQELSVPTNANATVMNT-AVKDEAVGALTMLGFAPSA 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VV +LK++  +    Q+++ AL+ I
Sbjct: 177 SAKVVVEILKEQPELP-VEQVVKAALKMI 204


>gi|294341429|emb|CAZ89846.1| Holliday junction ATP-dependent DNA helicase ruvA [Thiomonas sp.
           3As]
          Length = 190

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ TL  L   G   TL + T +R+D   L
Sbjct: 1   MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAAGHAVTLLIHTVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+G R+A+ VLS ++ +E+ +++  Q++    ++PGI  K 
Sbjct: 61  YGFATAAERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++          +   +    A + + AL+ LGY + +A   
Sbjct: 121 AER-------------LLLELKGKLGADLGSAATAAAGSASDVLQALIALGYSEREA--- 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +  K           IR AL++++
Sbjct: 165 -AAAAKALPEGCSVDDGIRQALKSLA 189


>gi|256788881|ref|ZP_05527312.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24]
 gi|289772769|ref|ZP_06532147.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24]
 gi|289702968|gb|EFD70397.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24]
          Length = 201

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +I+V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVATLAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSTGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      Q   +++ AL+ ++
Sbjct: 170 VSAVAPQAEAAGGTPQVGALLKAALQTLN 198


>gi|114566956|ref|YP_754110.1| Holliday junction resolvasome DNA-binding subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|122318040|sp|Q0AX15|RUVA_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114337891|gb|ABI68739.1| Holliday junction DNA helicase subunit RuvA [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 199

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 12/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D ++IDV GV Y +    R    L + G+   +     + +++ +L
Sbjct: 1   MIAFLKGAVFERRPDSIIIDVNGVGYEVNIHSRLFPRLPQRGEPILIHTFLQVLENEFKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   + + F  L +V G+G++ A+ VLS +       +I  Q+ K + +IPG+  K 
Sbjct: 61  FGFLDQDELRLFKTLLTVSGIGSKGALAVLSTMEPLVFYRAIASQDEKTLVRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L  V  +                      + AL  LGY + +   A
Sbjct: 121 AQRMIFELQDKVPELKLVEVE------------KEQRPLLDELMEALEILGYSRSEVLPA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           ++ + + ++      + I+L L+A
Sbjct: 169 IMDLNRNKQLGNIVEENIKLVLKA 192


>gi|220916123|ref|YP_002491427.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|254766937|sp|B8JF04|RUVA_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219953977|gb|ACL64361.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 197

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I    +D+ ++DV GV Y+++    +L+ L   G+   L V TH+R+D + L
Sbjct: 1   MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++ GI  K 
Sbjct: 61  YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K ++L+       +    +               +AL+NLGY   QA   
Sbjct: 121 AERLVLELKEKLVALARAAGPARAGAEAD---------VLEQLRTALLNLGYRPPQAEG- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+         +++R AL+ +
Sbjct: 171 VAEALRDSAEGRPLDELLREALKLL 195


>gi|90418966|ref|ZP_01226877.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337046|gb|EAS50751.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 206

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 134/206 (65%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+V++DV GV Y+ +C  RTL+ L   G+   LF++T++R+D +RL
Sbjct: 1   MIGKLKGTVDEIGEDHVVVDVHGVGYVAFCGARTLAALPGEGEAVVLFIDTYVREDMLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++ WF LLQ VQGVGARVA+ V+  ++A +L  ++ LQ+  ++A+ PG+  K+
Sbjct: 61  YGFATRAEQDWFRLLQMVQGVGARVALAVIGTLSAGDLANAVALQDKAMVARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA + S     D S   K      +  +   +A+SALVNLGY +DQA  A
Sbjct: 121 AARIVAELKDKAPAFSG-AGSDESLGLKRDIGGGTAAAPVADAVSALVNLGYPRDQAAEA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   LK      D +++IRL L+A+S
Sbjct: 180 VAKALKDAGEAPDSAKLIRLGLKALS 205


>gi|118617340|ref|YP_905672.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99]
 gi|183982124|ref|YP_001850415.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M]
 gi|166230572|sp|A0PPD2|RUVA_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560107|sp|B2HN62|RUVA_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118569450|gb|ABL04201.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99]
 gi|183175450|gb|ACC40560.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M]
          Length = 197

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MISSLRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTDARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+    R  F+ L SV GVG R+AM  LS   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFVDGETRDLFLTLLSVSGVGPRLAMATLSVHDANGLRQALADGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +   A   +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVVELRDKVG----------PAGSAATAPAVNGHTVRAPVVEALVGLGFAAKQAEEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  +      S + R AL  +
Sbjct: 170 TDKVLAGDGEATTSSAL-RAALSLL 193


>gi|168187973|ref|ZP_02622608.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str.
           Eklund]
 gi|169294186|gb|EDS76319.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str.
           Eklund]
          Length = 200

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   GL +DY++++   + Y IY    T++ +  I +   +++E  +R+D I +
Sbjct: 1   MFEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R  F LL ++ GVGA+ A+ +LS    + L  SI+ ++ K++ + PGI  KI
Sbjct: 61  YGFLREDERAMFNLLLTISGVGAKAALSLLSISNVSNLKVSIMQEDYKMLTRAPGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K   +    ++D+  V                A  ALV LG+ Q +A  A
Sbjct: 121 AQRITLELKDKIEKI---YEEDVENVKDISETSIDAGRKYDEATEALVALGFTQKEAEKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++   +       QII+ +LR +
Sbjct: 178 LKNIDINK----TIEQIIKDSLRYL 198


>gi|323706513|ref|ZP_08118072.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534143|gb|EGB23935.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 186

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I     DYV+I+  G+ + I  P  TLS L    +   L+   H+++D  +L
Sbjct: 1   MIDYIKGHIVEKGIDYVVIETLGIGFKIIVPRSTLSHLTNTSEIIKLYTYMHVKEDGFQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F  L +V GVG + A+ +LS I+     ++I   +SK I + PGI  K 
Sbjct: 61  YGFLTTNEVEIFKKLIAVNGVGPKAAVSILSTISIEGFYDAIRNSDSKAIEKSPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                   AH   +   + + + AL++LGY + ++  A
Sbjct: 121 AQRIILELKDKLTF----------------AHDVKLDDLSNDVVDALLSLGYTKQESIKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V     + ++    ++ AL+ +
Sbjct: 165 LEGV-----DCSNLESALKEALKKL 184


>gi|182415003|ref|YP_001820069.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1]
 gi|229560110|sp|B1ZN17|RUVA_OPITP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|177842217|gb|ACB76469.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1]
          Length = 200

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 5/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +        +++V G  Y ++ P+ T   L   G    L      R+D   L
Sbjct: 1   MITSIQGTLVSATPLQAIVEVAGFGYEVHIPVTTAERLPAAGAAVKLHTLVIYREDSQTL 60

Query: 61  FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S  +R +F L+   V GVG ++A+ ++SR+    L  +I + +   +A+ PGI  K
Sbjct: 61  YGFASPAERDFFRLMIEHVTGVGPKMALSIMSRLALPSLESAIRMGDVASLAKCPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ EL+ K                +  A      S   +A++ALV LGY    A  
Sbjct: 121 TAERLVVELRTKV----GATGAAPGLATQPAAAASPGASAHRDAVAALVALGYRSADADE 176

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
           AV          A    +I+ AL
Sbjct: 177 AVRRASLALGEAATTESLIKKAL 199


>gi|296283076|ref|ZP_06861074.1| Holliday junction DNA helicase RuvA [Citromicrobium bathyomarinum
           JL354]
          Length = 209

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 111/204 (54%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ +IDV GV Y+++C  RTL  LG  G    LF +  + ++ +RL
Sbjct: 11  MIAKLTGTLDATGPDWAVIDVGGVGYLVHCSTRTLDALGSEGGEARLFTDLQVSENDMRL 70

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL SVQGVG++VA+ +LS ++A E+  +    ++ ++A+  G+  K+
Sbjct: 71  LGFAEAAERDWFRLLTSVQGVGSKVALAILSVLSAGEVQAACASGDAAMVARANGVGPKL 130

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ KA +L               A        + +A+SAL NLG+    A  A
Sbjct: 131 AGRIVNELQDKAGAL--------PVAPGGVAVAAPKGGASADAVSALENLGFKPAIAAKA 182

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   + +    A + ++IR+AL+ 
Sbjct: 183 VAEAMGELGEGASEGELIRVALKK 206


>gi|289422389|ref|ZP_06424235.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius
           653-L]
 gi|289157224|gb|EFD05843.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius
           653-L]
          Length = 207

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 5/202 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG I+ +  DY+LI+  G+ Y +     TLS L  IG    ++ +  +R+D I L
Sbjct: 1   MIGYIKGIIDEIGIDYILIENNGIGYKLLVSTTTLSQL-SIGQEAKIYTKMIVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  + + F LL SV  VG +V MG+LS      +   II  +   +++ PG+  K 
Sbjct: 60  CGFYSKEEEEMFKLLTSVSKVGTKVGMGILSFAPPARIQSIIINSDVTAMSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +       M  +      I    S    AISAL+ LGY   +A  +
Sbjct: 120 AERIILELKDKVGKIVIDGLDTMENLPLSGKEIAIDNS-EDEAISALIALGYTSSEAQES 178

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  V +      D   II+ AL
Sbjct: 179 VNFVKQPGM---DVEVIIKKAL 197


>gi|330444140|ref|YP_004377126.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58]
 gi|328807250|gb|AEB41423.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58]
          Length = 207

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    V ++ QGV Y I+   R    L         ++    +++ +  
Sbjct: 1   MYDYIRGILICVRSGVVTLECQGVGYSIFVTERWGCDLIAASQKEVLIYTHAVLKETEHT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F +L S  G+G + A  +L+ +   +L  ++  ++ K ++ IPGI  K
Sbjct: 61  LYGFCSREERDCFRMLISFSGIGPKFANAILNSLPIKQLCCAVHNEDVKALSSIPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  S+  +   + S     +       S   + + ALV LGY +  A  
Sbjct: 121 TAEKLMLDLKQKLPSVLPLGGGETSPWQPLEL------SHREDGVQALVGLGYSKVMAEH 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   LK+    A  ++++ +AL+ 
Sbjct: 175 MIAEALKELPKGASLTEVLPIALKK 199


>gi|269219375|ref|ZP_06163229.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211168|gb|EEZ77508.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 196

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 99/207 (47%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++  +     +I+  GV Y +     TL+ L ++G    +     +R+D + L
Sbjct: 1   MIAALRGSVLSVEPTAAVIEAGGVGYAVQATPATLAGL-RVGQEAFVHTSLVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F +LQ+V GVG ++A+ +L+ +T   L +++   +   + ++ G+  K 
Sbjct: 60  FGFADADEREVFDVLQTVSGVGPKLALTILATLTPDRLRQAVANADIAALTRVSGVGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E           +   +           S  + + + ++ALV LG+ +  A +A
Sbjct: 120 AQRLVLE-----------IGAKLGPRRGGDLEAPSSNARSGDVVAALVGLGFSERDAESA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
              V K     A+  +++R +L+ +  
Sbjct: 169 FSQVEKATPE-AEVPELLRASLKILGA 194


>gi|318075775|ref|ZP_07983107.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actF]
          Length = 210

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V G+   + C   TLS L +IG+   +     +R+D + L
Sbjct: 1   MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+ ++   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +  ++      P +     +ALV LGY   +A  A
Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPPPWTEQLHTALVGLGYQPREAEEA 174

Query: 181 VVSVLKKEK 189
           V +V  + +
Sbjct: 175 VEAVTPQAE 183


>gi|116620084|ref|YP_822240.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255537|sp|Q02AG7|RUVA_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116223246|gb|ABJ81955.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 197

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 9/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +   + + VL++  GV Y +  P+ T + L  +G    L + TH+R+D + L
Sbjct: 1   MIALLRGLVVEKHPNQVLVETGGVGYDVTIPVSTFTKLPDLGGEVRLRIYTHVREDVLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L SV G+G  +A+ +LS + A +L+ SI     + + ++PG+  K 
Sbjct: 61  YGFLTQDEKALFEKLISVSGIGPTLAVKILSGLAAADLILSIRRGEVEKLVKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  + +       +          ++     + +SAL+NLG  + QA  A
Sbjct: 121 AERMVLELRDKLPAATGEEPGAPAA--------EALSPIDQDVLSALLNLGCARPQAEAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K      D   + R AL
Sbjct: 173 VRKA-KAAGASLDFEPLFRRAL 193


>gi|313114599|ref|ZP_07800107.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623063|gb|EFQ06510.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 203

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V++   GV Y   CP      L  +G   T++    + ++ + L
Sbjct: 1   MIYCLTGKIVKKSMNAVVLSCGGVGYYAQCPASVAGALPGVGKEATIYTVMSVTENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  +  F +L +V GVG +V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+ ELK K     +  +  +D++  + +          +  AI+ALV+LGY Q +A 
Sbjct: 121 AQRIVLELKDKVAKGFVDGISLEDVAGASAD----TQASQGSSQAIAALVSLGYSQSEAA 176

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV  +           +II+LALR+++
Sbjct: 177 LAVSKIDAALP----VEEIIKLALRSMA 200


>gi|229829132|ref|ZP_04455201.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM
           14600]
 gi|229792295|gb|EEP28409.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM
           14600]
          Length = 199

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +E +  + +++D  G+ Y I  P  +LS + +      ++    +R D   L
Sbjct: 1   MFSYIQGRVEEINPEGIVLDHDGIGYEIGLPQSSLSQI-RRQMQLRVYTYLQVRDDGFSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   D   F LL  V G+G + A+ +L  ++  +L  +I   + K IAQ PGI  K 
Sbjct: 60  FGFLKREDLDLFKLLIGVGGIGPKGALSILGVLSVDQLRFAIAAGDDKTIAQAPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ K         Q +      +A   S       AI AL  LGY   +A  A
Sbjct: 120 AQRVILDLRDKID-----FTQTLEAQLDSKASDRSSDDIRGEAILALNALGYSSAEALQA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   + +      +IR  L+ ++
Sbjct: 175 IRDL---DISSMSVEDLIRAGLKELA 197


>gi|225572217|ref|ZP_03781081.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040279|gb|EEG50525.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM
           10507]
          Length = 201

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G+ E  +L++  G+ Y I+ P+         G    +    H+R+D ++L
Sbjct: 1   MIAFMKGTLAGIEETKILLEHDGIGYEIFIPMDGRVDRLYTGQELMVHTYLHVREDVLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F LL  V GVG + A+G+LS I+A EL  +++ ++ K I++ PGI  K 
Sbjct: 61  YGFLTRDDLEIFRLLLGVNGVGPKAALGILSAISADELRFAVLAEDIKTISKAPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K  +L    ++ +       A    +      A  AL  LGYG  QA  A
Sbjct: 121 AQKLVLELKDKL-NLQDAFEKKLEHEYSSSAS-QEITDARQEAAEALTALGYGSTQALQA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V   EK   D   +++ AL+ +
Sbjct: 179 VRKVDGWEK--MDVETLLKAALKNM 201


>gi|217964320|ref|YP_002349998.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23]
 gi|290893935|ref|ZP_06556911.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-071]
 gi|254766966|sp|B8DHL5|RUVA_LISMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|217333590|gb|ACK39384.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23]
 gi|290556473|gb|EFD90011.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-071]
 gi|307571114|emb|CAR84293.1| holliday junction DNA helicase [Listeria monocytogenes L99]
 gi|313608655|gb|EFR84502.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           F2-208]
          Length = 201

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+E   +D    I+LAL+ +
Sbjct: 177 IPKLAKEEDLTSD--AYIKLALQLM 199


>gi|259417974|ref|ZP_05741893.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B]
 gi|259346880|gb|EEW58694.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B]
          Length = 229

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+V+IDV+GV YI+YC  RTL+ L  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRAPDHVMIDVRGVGYIVYCSDRTLASLPSVGEAVQLYTELLVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S ++++W  LL SVQGVGA+V++ +LS +    +  +I L +   +    G+  K 
Sbjct: 61  FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----------- 166
           A RI+ +LK KA    ++   + + +   + E     +  +    A  A           
Sbjct: 121 AQRIVLDLKDKAPSVMAMGGTITEALEGPDLEVVVEPASDAPVKPARKAAPKAPTGAAAA 180

Query: 167 -------LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                  L NLGY    A  AV          A ++++IR ALR ++
Sbjct: 181 SAGALSALGNLGYSPSDAAGAVAEAAADNPE-AGEAELIRAALRLLA 226


>gi|227496221|ref|ZP_03926520.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis
           DSM 15434]
 gi|226834252|gb|EEH66635.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis
           DSM 15434]
          Length = 209

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 8/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+V GV         TL+ L ++G+  T+  E  +R+D + L
Sbjct: 1   MIASLRGTVLDISLTGAVIEVGGVGMAFQATPTTLAGL-RVGEEGTVHTELVVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +RQ F +L   +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADADERQCFRVLLGAKGVGAKLALAILAVHTPDALRRAIASQDVAALKRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ++  K   L+    QD++   + QA   +      + ++ALV LG+ +  A  A
Sbjct: 120 AQRVIIDVGDKLGPLTG---QDLAA-ERPQAPAETGEEANPDVVAALVQLGWNEATARQA 175

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAI 205
           V +V    +++       +++R +LR +
Sbjct: 176 VGAVESGAQEQGEALSVPELLRASLRWL 203


>gi|154498068|ref|ZP_02036446.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC
           29799]
 gi|150273058|gb|EDN00215.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC
           29799]
          Length = 201

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +     ++D  GV Y       TL+ L + G+  TL+   ++R+D + L
Sbjct: 1   MFYYVKGPVVHMAPYLAVVDCGGVGYACRTTNNTLARL-RKGETATLYTHLNVREDAMEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F LL SV GVG + A+ +LS  +   L  SII  + K +   PGI  KI
Sbjct: 60  YGFASENELSCFQLLISVSGVGPKAALSILSSTSPEGLATSIITGDEKALTVAPGIGKKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            S        I    +    A      LGY Q +A  A
Sbjct: 120 AQRIILELKDKLAKGQLSTPGGESYGGTGVTVIPQNKASEAAAAL--AVLGYSQAEAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++   +       +II+ AL+ +
Sbjct: 178 LKNI---DMETLALEEIIKQALKKM 199


>gi|146277278|ref|YP_001167437.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17025]
 gi|166200252|sp|A4WRW8|RUVA_RHOS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145555519|gb|ABP70132.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17025]
          Length = 224

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G ++    D+VLIDV+GV YI++   RTL+ +   G+   L+ E  +R+D ++L
Sbjct: 1   MIGKISGILDFRGPDHVLIDVRGVGYIVHVSDRTLAAMPAPGEGVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A  +  +I L +++ I   PG+  KI
Sbjct: 61  FGFTTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGVARAISLGDARSIQAAPGVGPKI 120

Query: 121 ASRIMTELKGKAISL----------------SSVVQQDMSCVNKEQAHICSMPSFAINAI 164
           A R++ ELK KA +L                 +  +         +A      +   +A+
Sbjct: 121 AQRVVLELKSKAPALMVMGGAAPARAAAVVEETPEEPAPRRKPSTRAAPPPAANHTGDAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEK 189
           SAL NLGY    A  AV        
Sbjct: 181 SALTNLGYQPSDAAQAVAQASGDNP 205


>gi|294674697|ref|YP_003575313.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23]
 gi|294472323|gb|ADE81712.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23]
          Length = 200

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  L      ++  GV Y +   + T S + +      L+V   +R+D   L
Sbjct: 1   MIEYIKGELTELTPALATVEACGVGYGLNISLNTFSAI-QGKKEVKLYVYEAIREDAHVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R+ F+LL +V GVGA  A  +LS ++  EL  +I + N+K+I  I GI    
Sbjct: 60  FGFVNKKEREMFLLLITVSGVGANTARMMLSGMSVAELCNAISMGNAKLIQGIKGIGKMT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ K ++L    +         Q            AI+AL  LG+        
Sbjct: 120 AQRIIVDLRDKIVTLGISDE----IPAGGQIAAPVNNQVKDEAIAALTMLGFAPAPTQKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L+   N A   ++++LAL+ I
Sbjct: 176 VLQILQANPN-APVEEVVKLALKQI 199


>gi|317505321|ref|ZP_07963249.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           salivae DSM 15606]
 gi|315663535|gb|EFV03274.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           salivae DSM 15606]
          Length = 205

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG +  L     +++  GV Y +   + T S + +      L+V     T  R D
Sbjct: 1   MIEYIKGQLAELTPALAVVEAAGVGYALNISLTTYSGI-QGKKEVKLYVHEALTTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF++  +R+ + LL +V GVGA  A  +LS +  TEL  +I   + ++I  + GI
Sbjct: 60  SFTLFGFVNKQERELYRLLITVSGVGANTARMMLSSMNPTELCNAIANGDERMIKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +L+ K ++     +     V  E+A      +    A++AL  LG+    
Sbjct: 120 GLKTAQRIIVDLRDKIMASGIANEL---HVGGEKAESTLNNAVKEEAVAALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
               VVS+L+K+ N+    Q+++ AL+ +
Sbjct: 177 IAKVVVSILQKQANLP-VEQVVKEALKLL 204


>gi|332653059|ref|ZP_08418804.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16]
 gi|332518205|gb|EGJ47808.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16]
          Length = 213

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    V+ID  GV Y       TLS L K G+   +F   ++R+D + L
Sbjct: 12  MFYYLNGTVAHIEPYLVVIDCGGVGYACRTTSYTLSAL-KKGEKGKVFTHLNVREDAMEL 70

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F  L SV GVG + A+ +LS  T   L  SII  + K +    GI  KI
Sbjct: 71  YGFATQEELNLFQQLISVSGVGPKAALSILSSNTPANLALSIITGDEKALTCAQGIGKKI 130

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     +V     +        I    +    A +AL  LGY Q +   A
Sbjct: 131 AQRVILELKDKLAKGQAVNGAGETYGGTGVTVIPE--NKLSEASAALAVLGYTQGEINVA 188

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   + +     QII+ AL+ +
Sbjct: 189 LKGI---DLDSLTLEQIIKQALKKM 210


>gi|46907761|ref|YP_014150.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47094257|ref|ZP_00231966.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b
           H7858]
 gi|226224134|ref|YP_002758241.1| Holliday junction DNA helicase (ruvA) [Listeria monocytogenes
           Clip81459]
 gi|254824408|ref|ZP_05229409.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J1-194]
 gi|254852157|ref|ZP_05241505.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           R2-503]
 gi|254931468|ref|ZP_05264827.1| holliday junction DNA helicase RuvA [Listeria monocytogenes
           HPB2262]
 gi|254992897|ref|ZP_05275087.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-064]
 gi|255520701|ref|ZP_05387938.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J1-175]
 gi|300764800|ref|ZP_07074790.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           N1-017]
 gi|67461453|sp|Q71ZD7|RUVA_LISMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|259495649|sp|C1KVI0|RUVA_LISMC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46881030|gb|AAT04327.1| holliday junction DNA helicase RuvA [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017363|gb|EAL08187.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876596|emb|CAS05305.1| Putative Holliday junction DNA helicase (ruvA) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605460|gb|EEW18068.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           R2-503]
 gi|293583020|gb|EFF95052.1| holliday junction DNA helicase RuvA [Listeria monocytogenes
           HPB2262]
 gi|293593643|gb|EFG01404.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J1-194]
 gi|300514476|gb|EFK41533.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           N1-017]
 gi|328474893|gb|EGF45693.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 220]
 gi|332311975|gb|EGJ25070.1| Holliday junction ATP-dependent DNA helicase ruvA [Listeria
           monocytogenes str. Scott A]
          Length = 201

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+E   +D    I+LAL+ +
Sbjct: 177 IPKLSKEEDLTSD--AYIKLALQLM 199


>gi|229586656|ref|YP_002845157.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5]
 gi|259495654|sp|C3PNA4|RUVA_RICAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|228021706|gb|ACP53414.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5]
          Length = 203

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLNLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS      + + +        P  +   I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKHITPVASNEVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197


>gi|303238091|ref|ZP_07324631.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN]
 gi|302481726|gb|EFL44781.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN]
          Length = 205

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG +  L     ++D  GV Y +   + T   + +      LFV        R D
Sbjct: 1   MIEYIKGELAELTPALAVVDANGVGYGLNISLNTYGVI-QGKKSVKLFVHEAISMGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  SYTLYGFANKQERGLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K +      +     V+ +        +    A+ AL  LG+    
Sbjct: 120 GLKTAQRIIVDLKDKIVQSGIAEEL---HVSSQPNAANVNNAVKDEAVGALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VV +L ++ ++    Q+++LAL+ I
Sbjct: 177 SAKVVVDILTEQPDLP-VEQVVKLALKQI 204


>gi|285019190|ref|YP_003376901.1| holliday junction resolvasome, DNA-binding subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474408|emb|CBA16909.1| putative holliday junction resolvasome, dna-binding subunit protein
           [Xanthomonas albilineans]
          Length = 194

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYEMEAPMSTFYDLPDVGREVILFTHYAHKEDSVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++       I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQRVTGIGAKIALAVLSGVSVDAFARLITAADVTALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   S                          A SAL  LGY       A
Sbjct: 121 AERMVVELRDRAADFSGGAPITGQL----------GADAVSEATSALQQLGYKP---AEA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                +   +  + + +IR AL++
Sbjct: 168 AKMAREAAADGDEVAMVIRKALQS 191


>gi|326386113|ref|ZP_08207737.1| Holliday junction DNA helicase RuvA [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209338|gb|EGD60131.1| Holliday junction DNA helicase RuvA [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 206

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 115/204 (56%), Gaps = 1/204 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ +IDV GV Y+++   RTL+ LG  GD   +  E  + +  +RL
Sbjct: 1   MIAKLTGLLDDTGPDWAVIDVNGVGYLVHASARTLAHLGNRGDRVVIHTELQVSETDMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R WF LL  VQGVG++VA+ +LS +T  EL  +    +S ++A+  G+  K+
Sbjct: 61  IGFASAGERAWFRLLTVVQGVGSKVALAILSALTVDELQRACAGGDSAMVARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK KA  L+ +           +A + S  S + +A+SAL NLG+    A TA
Sbjct: 121 ASRIVNELKDKAGGLAGLSGGAGITAEPGEAPVVS-GSASADAVSALQNLGFKPAVAATA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   +++    A    ++R+AL+ 
Sbjct: 180 VTKAIEELGEDASLGDLVRVALKR 203


>gi|297571393|ref|YP_003697167.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931740|gb|ADH92548.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 199

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+V GV   +     TLS L ++G    L     +R+D + L
Sbjct: 1   MIASLRGIVSAIGITSAVIEVGGVGMSVQATPTTLSTL-RMGAEAHLMTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F +L  + G+G R A+ VL+ +T   L +++  +N   + ++ GI  K 
Sbjct: 60  YGFGDIDERDVFDILTGISGIGPRTALAVLAVLTPDALRDAVATKNEAALTRVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  K            +      A          + + ALVNLG+ + +A  A
Sbjct: 120 AQRMILELGSKLGPTRGSATASGADTRVVPAD--------ADVLEALVNLGWNEREAAPA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V     K    A  ++++R AL+ +  
Sbjct: 172 VHEATNKMPG-ASVAELLRAALQILGS 197


>gi|182439809|ref|YP_001827528.1| Holliday junction DNA helicase RuvA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780473|ref|ZP_08239738.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf.
           griseus XylebKG-1]
 gi|229560130|sp|B1W3G3|RUVA_STRGG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|178468325|dbj|BAG22845.1| putative Holliday junction DNA helicase subunit B [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660806|gb|EGE45652.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf.
           griseus XylebKG-1]
          Length = 208

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGREARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFANDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +            + + ++         +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGEPVG------AHIGQQGIGTPVTSGWRDQLQAALIGLGYASREADEA 173

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      E       Q++R AL+ ++
Sbjct: 174 VNAVAPQAEAAVAEGTAPPVPQLLRAALQTLN 205


>gi|320534404|ref|ZP_08034887.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133379|gb|EFW25844.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 217

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 8/212 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L ++G+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ++  K   ++       +        ++    S P    + ++ALV LG+ +  
Sbjct: 120 AQRVILDVADKLGPVTGDDLGAARAASGTAGGQEGAADSGPEPHADVVAALVQLGWNEAS 179

Query: 177 ATTAVVSV---LKKEKNIADDSQIIRLALRAI 205
           A  AV SV           D + ++R +LR +
Sbjct: 180 ACQAVSSVTADAAAADQDPDTAALLRASLRWL 211


>gi|256827686|ref|YP_003151645.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium
           curtum DSM 15641]
 gi|256583829|gb|ACU94963.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium
           curtum DSM 15641]
          Length = 194

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D +++DV GV + +    ++LS L  +G    +     +R+D + L
Sbjct: 1   MIASLKGTLVAREADGIVLDVGGVGFSVGMSTQSLSRLPSVGVTVQIHTYLQVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  ++  F  L SV G+G +VA+  LS  T   L  +I+  +   +++IPGI  K 
Sbjct: 61  FGFTSVKEKALFEKLLSVSGIGPKVALSALSSFTPDALTSAIMTNDVTGVSRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+G           D++    +Q  + S       A+  L+ LG+   +A  A
Sbjct: 121 AQRIILELQG---------SLDVAEQTSDQMAVPSDTQLHHRALDDLLALGFSSTEAELA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK     A ++ +++ AL+ +
Sbjct: 172 ----LKGAPKDATEASLVQYALKRL 192


>gi|229825022|ref|ZP_04451091.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC
           49176]
 gi|229790769|gb|EEP26883.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC
           49176]
          Length = 204

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +EG+  + V+IDV G+      P   ++ L KI +   L    H+R+D ++L
Sbjct: 1   MIASVKGKLEGVTTESVIIDVNGLGVEAIVPTTVINLLPKIDENIKLHTYLHVREDVMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   D  +F LL +V G+G + A+ +LS +    L  +I+ +++K I +  GI  K 
Sbjct: 61  YGFLEKEDLDFFKLLITVNGIGPKAAIAILSSMPTDILTFAILSEDTKTIQKAQGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K   + +         +     I         A+  L  LGY Q +A  A
Sbjct: 121 AKKLVLELKDKVGIIKTPQNTGSEIYDNAALTIGINSEIKDEAVQVLTALGYSQTEAVKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V   E+      ++++L+L+ +
Sbjct: 181 ISTVEMYEE--MTSEELVKLSLKNL 203


>gi|283457993|ref|YP_003362600.1| holliday junction resolvasome, DNA-binding subunit [Rothia
           mucilaginosa DY-18]
 gi|283134015|dbj|BAI64780.1| holliday junction resolvasome, DNA-binding subunit [Rothia
           mucilaginosa DY-18]
          Length = 209

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +IDV G   +++   RTLS L + G+  T+     +R++ + L
Sbjct: 4   MIASLTGRVAQVGLDHAVIDVNGFGMLVHATARTLSKL-RTGEEATVLTTMIVREESMTL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TA E+  ++   + K   ++PGI  K 
Sbjct: 63  YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    ++  +     +    + AL +LG+ +  A+ A
Sbjct: 123 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA-ISC 207
           + + +K   +   +   +  ALR  ++ 
Sbjct: 174 IDAYVKHNPSAESEPVGV--ALRGVLAS 199


>gi|288924630|ref|ZP_06418567.1| holliday junction DNA helicase RuvA [Prevotella buccae D17]
 gi|315607515|ref|ZP_07882510.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           buccae ATCC 33574]
 gi|288338417|gb|EFC76766.1| holliday junction DNA helicase RuvA [Prevotella buccae D17]
 gi|315250698|gb|EFU30692.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           buccae ATCC 33574]
          Length = 205

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG +  L     +I+  GV Y +   + T + + +      L+V     T  R D
Sbjct: 1   MIEYIKGELTELTPALAVIEAAGVGYALNISLNTYTAI-QGKKETKLYVHEALTTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  + LL +V GVGA  A  +LS ++A EL   I   N K++  + GI
Sbjct: 60  AFTLYGFFSKQERSLYRLLITVSGVGANTARMILSAMSAKELCGVISTGNDKMLKSVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K ISL      D    +     +    +    A+SAL  LG+    
Sbjct: 120 GLKTAQRIIVDLKDKIISLGI---ADELPASGGLPSMPVDNATRDEAVSALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VV++L+++ ++A    +++ AL+ I
Sbjct: 177 SQKVVVAILQEQPDMA-VEMVVKEALKRI 204


>gi|254294768|ref|YP_003060791.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814]
 gi|254043299|gb|ACT60094.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814]
          Length = 209

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 113/208 (54%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG +    +   LIDV GV Y+++C  RTL+ L  IG   T+FVET M ++ I+L
Sbjct: 1   MIARLKGIVAATGDGQALIDVNGVGYVLFCGGRTLARL-TIGRENTVFVETQMSENAIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  DR WF  LQ   GVGA+ A+ +L  +T  +L+++I+L ++  + +  G+  K+
Sbjct: 60  YGFETAEDRAWFSRLQDAPGVGAKAALNILDALTPAQLMDAIVLGDAASVQRAHGVGKKL 119

Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R+++E K K     L SV       V    +   +       A SAL NLGY    A 
Sbjct: 120 AERVVSEFKDKPPPAGLFSVSFAPSEGVEGLASTSTASTGSRAAAASALTNLGYQNVDAQ 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV    K+    A +  +I+ AL+A++
Sbjct: 180 RAVAVAAKELGEDASEGALIKAALKALA 207


>gi|322412854|gb|EFY03762.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 197

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +           +K Q    S       AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEVPQE-------TSKAQPSTSSNNDELDEAIEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 172 IRAFFEGTSETA--EQYIKSALKLL 194


>gi|241766520|ref|ZP_04764384.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN]
 gi|241363253|gb|EER58812.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN]
          Length = 190

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSTFYNLPAVGERVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R A+ +LS +   +L ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGTATERQAFRELIKISGVGPRTALSILSGMGVGDLAQAITLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++       +   H         + + ALV LGY   +A   
Sbjct: 121 AER-------------LLLELKGKLGAEMGTHAQVTSDAQADILQALVALGYNDKEA--- 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             + LK        S  I+LAL+A++
Sbjct: 165 -AAALKALPADVGVSDGIKLALKALA 189


>gi|159899035|ref|YP_001545282.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|229560066|sp|A9AZL0|RUVA_HERA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|159892074|gb|ABX05154.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 197

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ + +D V+IDV GV   I  P   L+ +G IGD   L+   H+R+D + L
Sbjct: 1   MIASVRGVVQLIGQDQVVIDVHGVGLAIAVPRTVLATIGAIGDTAQLYTHLHVREDMLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S   R  F LL  V G+G +VA+ +LS  T  EL  +I  ++  +++++PGI  K 
Sbjct: 61  FGFSSPAQRALFELLLGVSGIGPKVALALLSAATPEELQHAIAREDITMLSKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELKGK           ++ ++ + +    + +     I  L +LGY   +A  A
Sbjct: 121 AARLVLELKGKF---------GVATISPQLSTNPGLLALNTELIDILTSLGYSTTEAQAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + ++       AD  + +RLAL+
Sbjct: 172 LNALPADAP--ADTEERLRLALQ 192


>gi|6685961|sp|Q9ZNJ6|RUVA_CLOHI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3892649|dbj|BAA34545.1| ruvA [Clostridium histolyticum]
          Length = 197

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ ++Y++I+   + Y I+    T++ +  IG+   L++   +R+D I L
Sbjct: 1   MYEYIKGTYMGINKEYIVIENGDIGYKIHSSGYTIANMPNIGEHIMLYLTQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  + + F  L +V G+GA+ ++ +LS      L  +I+L++ K++ + PGI  K 
Sbjct: 61  YGFGSKEELELFNKLLTVNGIGAKASLSLLSITNVENLKRAIVLEDEKLLIKAPGIGKKT 120

Query: 121 ASRIMTELKGKA-ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ ELK K  ++L   +Q D +        I         A  AL++LGY + +   
Sbjct: 121 AQRIILELKDKLDVNLDEGIQTDSN-------DIKVSSKILEEAKEALMSLGYSEKECEK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ +V +KE        II+ +L+ +
Sbjct: 174 ALKNVEEKE----SLEIIIKESLKFL 195


>gi|89895213|ref|YP_518700.1| hypothetical protein DSY2467 [Desulfitobacterium hafniense Y51]
 gi|122997255|sp|Q24UN6|RUVA_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89334661|dbj|BAE84256.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 201

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 111/207 (53%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  +  D +++DVQGV Y +  P   L      G    L+    +R+D++ L
Sbjct: 1   MIGMLRGKVWEIQADKLILDVQGVGYQLSIPYGLLGK-AHPGHELILYTHVILREDELAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +++ F+L+ SV G+G + A+ +LS +   +   +I  +N  ++ ++PGI  K 
Sbjct: 60  YGFSSAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K         + ++    E A      +F   A+  L+ LG+ Q++A  A
Sbjct: 120 AQRLILELKEKFKG------RAIALEGIEGAGSLPQAAFHSEAMETLLALGFSQEEAKKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + ++    + ++ + Q +RLALR+++ 
Sbjct: 174 LQALPDSAQALSTEEQ-VRLALRSLAA 199


>gi|319892695|ref|YP_004149570.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162391|gb|ADV05934.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 199

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G +  L+  +++++   G+ Y I  P  +      +     ++    +R+D   
Sbjct: 1   MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQTVKVYTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F+ L  V G+G + A+ +L+  +  E+  +I  +N   + Q PGI  K
Sbjct: 60  LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK +    V +  +    +++            A+ AL  LGY + +   
Sbjct: 120 TARQIVLDLKGKVVVTEEVSEGLLDIATEQE------DLAVQEALLALEALGYSKRE-LK 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V   ++++   +D  + ++  L+ +
Sbjct: 173 KVEKAMQQQI-FSDVDEAVKYGLKQL 197


>gi|298373760|ref|ZP_06983749.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274812|gb|EFI16364.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 193

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L   + +++V  + Y +   + T S L    D   ++V   +R+D   L
Sbjct: 1   MIDYIKGKIVELSPAHAVVEVSDIGYHVNISLATYSELNG-KDNAKIYVYEAIREDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +RQ F+LL SV GVGA  A  +LS I   +L  +I   N+ ++  + GI  K 
Sbjct: 60  FGFFGRQERQLFLLLISVSGVGANTARVILSSIAIDDLQSAIQTGNAAILKSVKGIGSKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   +           N            A  A++ALV LG+ Q  A  A
Sbjct: 120 AERIIVDLKDKVSKIEISTVDKPVVDN----------VLADEAVAALVMLGFSQMPAQKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V++    +    Q+I+ +L+ +
Sbjct: 170 VRKVIEINPQLT-IEQVIKQSLKLL 193


>gi|327394173|dbj|BAK11595.1| Holliday junction DNA helicase RuvA [Pantoea ananatis AJ13355]
          Length = 175

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P+     L  +     +F +  +R+D   LFGF S  +R  F  L  V GVG ++A+ +
Sbjct: 1   MPMTCFYELPDLNHEAVIFTQFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAI 60

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL-SSVVQQDMSCVNK 148
           LS ++A + V ++  +    + ++PG+  K A R++ E+K +   +   +   D +    
Sbjct: 61  LSGMSAQQFVTAVEKEEIAALVKLPGVGKKTAERLVVEMKDRFKGMHGDLFGGDSAFTLT 120

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                         A++ALV+LGY   +A+  +  V + +   AD   +IR ALRA
Sbjct: 121 TPGPEPETNDAESEAVAALVSLGYKPQEASRMISKVGRPD---ADCETLIREALRA 173


>gi|229491976|ref|ZP_04385793.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis
           SK121]
 gi|229321108|gb|EEN86912.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis
           SK121]
          Length = 199

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    LF    +R+D + L
Sbjct: 1   MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     +  F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K           ++      + + +  S     + AL  LG+   QA  A
Sbjct: 120 AERMVVELRDKV--------DAVATTAGAASGVVAGSSIRDQIVEALEGLGFPIKQAEQA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SVL +    A  S  +R AL  +
Sbjct: 172 TDSVLAESPE-ATTSVALRSALSLL 195


>gi|121595991|ref|YP_987887.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42]
 gi|166229625|sp|A1WC36|RUVA_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120608071|gb|ABM43811.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42]
          Length = 190

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +   + T   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +      + + AL+ LGY   +A   
Sbjct: 121 AER-------------LLLELKGKLGADVGVRAHAANDNQADILQALLALGYNDKEA--- 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             + LK        S+ I+LAL+++S
Sbjct: 165 -AAALKALPADVGVSEGIKLALKSLS 189


>gi|297198358|ref|ZP_06915755.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC
           29083]
 gi|197714415|gb|EDY58449.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC
           29083]
          Length = 201

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTIAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RLGQPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFVDDDERQIFELLQTASGVGPRLAQAMLAVHAPDALRRAVATGDEKALIAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAIGAPVTQGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206
           V +V    +  +      Q+++ AL+ ++
Sbjct: 170 VTAVTPQAEASEGTPQVGQLLKAALQTLN 198


>gi|300934559|ref|ZP_07149815.1| Holliday junction DNA helicase RuvA [Corynebacterium resistens DSM
           45100]
          Length = 208

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DYV+++  GV Y  +     +  L + G    +     +R+D   L
Sbjct: 1   MIASLRGTVIDKGLDYVVVECSGVGYHCHTTPAIVGTL-ERGTEAFVLTTLVVREDAQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F     RQ F+ LQ V GVGARVA+ ++S +T  EL  ++   ++K + + PG+  ++
Sbjct: 60  YAFTDSDQRQTFLALQKVSGVGARVALAIMSVLTPAELAAAVAEGDAKTLQRAPGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LKGK  +LSS V    +        +    S       ALV LG+ + +A + 
Sbjct: 120 AERMVVDLKGKLGALSSEVSTPGAPSPDSPQGLS--DSVREQVEEALVGLGFTEAKAAST 177

Query: 181 VVSVLK--KEKNIADDSQIIRLAL 202
           V   +   ++  + D S ++R AL
Sbjct: 178 VSQAVARTEDAGLLDASSLLRAAL 201


>gi|83859806|ref|ZP_00953326.1| Holliday junction DNA helicase motor protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852165|gb|EAP90019.1| Holliday junction DNA helicase motor protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 216

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + E+  +IDV GV Y++    RTL  L + G    L +ETH+R+DQ +L
Sbjct: 1   MIGKLKGVVDCVGEEEAVIDVNGVGYLVSAGSRTLGRL-EPGKPVALHIETHVREDQFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLSD +R WF+ LQSVQGVGA+ A+ +L  I   E+  S IL +     +  G+  K+
Sbjct: 60  FGFLSDSERAWFVRLQSVQGVGAKHALAMLDAIEVGEIESSAILGDPLPFERAKGVGKKL 119

Query: 121 ASRIMTELKGKAISLS----------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
           A RI TELK KA  L           +             A          +A+SALVNL
Sbjct: 120 AQRIATELKDKAPPLGRSLGAGVAELAAALAPAGAETPTAAPAPKDNVMRESAVSALVNL 179

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GY +  A  A    L++    A +  +I+ AL+ ++
Sbjct: 180 GYSESDARKAAAEALRQLGEDATEGLVIKSALKELA 215


>gi|260910076|ref|ZP_05916757.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260635788|gb|EEX53797.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 205

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG++  L     +I+  GV Y +   + T S + +  D   LFV     T  R D
Sbjct: 1   MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYSAI-QGKDKLKLFVHEALVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R+ + LL SV GVGA  A  +LS ++ +EL   I   + K++  + GI
Sbjct: 60  SYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPSELCNVIAAGDDKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A RI+ +LK K   ++S V Q++S V           +    A+ AL  LG+    
Sbjct: 120 GAKTAQRIIVDLKDKI--MTSGVAQELS-VPTNANANAMNAAVKDEAVGALTMLGFAPAT 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VV +LK++ ++    Q+++ AL+ I
Sbjct: 177 SAKVVVEILKEQPDLP-VEQVVKAALKMI 204


>gi|258512078|ref|YP_003185512.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478804|gb|ACV59123.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 208

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 113/205 (55%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L   YV +DV+ V Y ++   RT + L  +GD   L+   H+R+D   L
Sbjct: 1   MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAALN-LGDTAFLYTHHHVREDGWAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G ++A+ V+      E+V +I+ ++++ ++++PGI  K+
Sbjct: 60  YGFETIEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDAESLSRLPGIGRKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASR++ EL+ K   L+    +  +  +  Q       S A +A+SALV LGY   +A  A
Sbjct: 120 ASRLVVELREKLDDLAPAALRAPAPASSPQG------SAAEDAVSALVALGYRPREAEEA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V +  +++ D    I+ AL  +
Sbjct: 174 VSAVGRGRQSVEDT---IKAALTYL 195


>gi|300781059|ref|ZP_07090913.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           genitalium ATCC 33030]
 gi|300532766|gb|EFK53827.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           genitalium ATCC 33030]
          Length = 207

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+  GV Y    P  TL+ L + G+   +     +R+D + L
Sbjct: 1   MIDSLNGEVISIGLDHAVIECAGVGYRFLAPPPTLARLVR-GETTRVLTTLVVREDDMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  R  F  L +V G+G ++A+  LS  T  EL   I   ++K I  IPG+  K+
Sbjct: 60  YGFTDDDARSMFHRLTAVSGLGPKLAIAALSVFTPGELAAHITSGDAKTIQSIPGVGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A R++ ELK K   L     Q  +     +    S  SFA    + ALV LG+ +  +  
Sbjct: 120 ADRMVLELKDKLQGLYPGAAQSEAPEAAGEVPPISGSSFATEQVVEALVGLGFPEK-SAR 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A V  +  E + A+ S ++R AL  +
Sbjct: 179 AAVDAVAAENDGAESSVLLRAALNRL 204


>gi|307244215|ref|ZP_07526330.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492365|gb|EFM64403.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis
           DSM 17678]
          Length = 203

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 11/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG +E +  DYVLI+   + Y +     TLS L + GD   ++ +  +R+D I L
Sbjct: 1   MIGYIKGTVEYIGIDYVLIENNEIGYKLNASSNTLSQLNE-GDRVKVYTKMIVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  + + F LL SV  +G ++ + +LS  T ++L   I   ++K +++ PG+  K 
Sbjct: 60  CGFYSKEELEMFNLLTSVSKIGTKLGLAILSFATPSQLHLYISTSDTKTLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179
           A R++ ELK +   LS      +S  +       SMP+ +   AI AL+ LGY   ++  
Sbjct: 120 AERMVLELKDRLGKLS------ISGEDFVGKPTVSMPTTSDGEAIDALIALGYTGQESKV 173

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
           AV  V +          I++ AL
Sbjct: 174 AVDFVKQPGMG---VEDIVKKAL 193


>gi|260898721|ref|ZP_05907217.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           Peru-466]
 gi|308089527|gb|EFO39222.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           Peru-466]
          Length = 147

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 73/137 (53%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ E+K +     +
Sbjct: 121 AERLVVEMKDRLKGWGA 137


>gi|261878755|ref|ZP_06005182.1| crossover junction endoribonuclease subunit A [Prevotella bergensis
           DSM 17361]
 gi|270334761|gb|EFA45547.1| crossover junction endoribonuclease subunit A [Prevotella bergensis
           DSM 17361]
          Length = 206

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  I+G +  L     +++  G+ Y +   + T   + +      L+V     T  R D
Sbjct: 1   MIEYIQGELTELTPALAVVETGGIGYALSISLNTYDDI-QGKKAVKLYVHEAIQTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R+ + +L +V GVGA  A  +LS +T  EL  +I   N K+I  + GI
Sbjct: 60  NYTLYGFASKQERELYRMLITVSGVGANTARTMLSSLTPKELCNAIANGNEKLIKSVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A R++ +L+ K +  SS + + +     +        +    A+SAL  LG+    
Sbjct: 120 GLKTAQRVIVDLRDKIV--SSGIAEVLHAGTPDTKVSAVNTAVKDEAVSALTMLGFSPAP 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           AT  V ++L ++ ++     +++ AL+ I
Sbjct: 178 ATKTVTAILTEQPDMV-VEMVVKEALKRI 205


>gi|269795058|ref|YP_003314513.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii
           DSM 10542]
 gi|269097243|gb|ACZ21679.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii
           DSM 10542]
          Length = 206

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  D  +++V G+ Y++Y    TL+ L ++G   ++     +R+D + L
Sbjct: 1   MIASLSGTVQTVRLDSAVLNVAGIGYLVYATPATLATL-RVGAEASVATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F   Q+V GVG R+A+ +L+  T   L  ++   + K + ++PGI  K 
Sbjct: 60  YGFSDDDERSVFEASQTVSGVGPRLALAMLAVHTPDGLRRALAGGDVKALTRVPGIGAKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  K         Q         A    +       + ALV+LG+    A  A
Sbjct: 120 AQRLILELGDKL-------GQPTGLDGGSVAPTAGLGDQRDQVVEALVSLGWSAKVAEDA 172

Query: 181 VVSVLKKEK----NIADDSQIIRLALRAI 205
           + +VL +        +D   ++R AL+ +
Sbjct: 173 IGTVLAESGATSVTTSDVPVVLRSALKVL 201


>gi|149203738|ref|ZP_01880707.1| Holliday junction DNA helicase motor protein [Roseovarius sp.
           TM1035]
 gi|149142855|gb|EDM30897.1| Holliday junction DNA helicase motor protein [Roseovarius sp.
           TM1035]
          Length = 220

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 13/218 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I+    D+VLIDV+GV Y++YC  RTLS L  +G    L+ +  +R+D ++L
Sbjct: 1   MIGRVAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPAVGGMAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I + +   +    GI  K 
Sbjct: 61  FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIAIGDWNSVTAAKGIGAKT 120

Query: 121 ASRIMTELKGKAI------------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV 168
           A R++ ELK KA               +    + +   +     +   P     A+SAL 
Sbjct: 121 AQRVVNELKDKAPLVMAMGAAPAPMPAAPDTDEVIETASVPTPPVPPSPGAQAEALSALT 180

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           NLGY   +A  AV  V  +    A  +++IR ALR ++
Sbjct: 181 NLGYTPGEAAGAVAQVAGETPE-ATTAELIRAALRRLA 217


>gi|251783476|ref|YP_002997781.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242392108|dbj|BAH82567.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323128222|gb|ADX25519.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 197

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +           +K +    S       AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEVPQE-------TSKAKPSTSSNNDQLDEAIEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 172 IRAFFEGTSETA--EQYIKSALKLL 194


>gi|116872962|ref|YP_849743.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123463790|sp|A0AIY2|RUVA_LISW6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116741840|emb|CAK20964.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 201

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGKVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGSEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVFKAPENDIVHGLSPQLEEAVLALEALGYSTKELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+    +D    I+LALR +
Sbjct: 177 IPKLSKENDLTSD--AYIKLALRLM 199


>gi|16803573|ref|NP_465058.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes EGD-e]
 gi|224499806|ref|ZP_03668155.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes Finland
           1988]
 gi|224501527|ref|ZP_03669834.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           R2-561]
 gi|254828233|ref|ZP_05232920.1| ruvA [Listeria monocytogenes FSL N3-165]
 gi|254829708|ref|ZP_05234363.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 10403S]
 gi|284801923|ref|YP_003413788.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578]
 gi|284995065|ref|YP_003416833.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923]
 gi|20455246|sp|Q8Y6Z7|RUVA_LISMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|16410962|emb|CAC99611.1| ruvA [Listeria monocytogenes EGD-e]
 gi|258600621|gb|EEW13946.1| ruvA [Listeria monocytogenes FSL N3-165]
 gi|284057485|gb|ADB68426.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578]
 gi|284060532|gb|ADB71471.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923]
          Length = 201

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+    +D    I+LAL+ +
Sbjct: 177 IPKLAKEADLTSD--AYIKLALQLM 199


>gi|312139494|ref|YP_004006830.1| holliday junction DNA helicase ruva [Rhodococcus equi 103S]
 gi|311888833|emb|CBH48145.1| Holliday junction DNA helicase RuvA [Rhodococcus equi 103S]
          Length = 201

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + GD   L     +R+D + L
Sbjct: 1   MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM +L+ +    L +++   N   + ++PGI  + 
Sbjct: 60  YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++      ++          S        + AL  LG+  + A  A
Sbjct: 120 AERMVVELRDKVEAVA------VTGDLPGAGAATSASVVRDQVVEALTGLGFKLEHAEKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V+  +   A  S ++R AL  +
Sbjct: 174 TDTVVAADPE-APTSTVLRSALALL 197


>gi|315498698|ref|YP_004087502.1| holliday junction DNA helicase ruva [Asticcacaulis excentricus CB
           48]
 gi|315416710|gb|ADU13351.1| Holliday junction DNA helicase RuvA [Asticcacaulis excentricus CB
           48]
          Length = 205

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 116/205 (56%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +  + +D  +I+V G+ YI+ C +RTL+ L   G    L +E+  R+D  RL
Sbjct: 1   MIGRLRGILLEIEDDEAVIEVMGLGYIVKCGVRTLANLPANGQEAILHIESQTREDGTRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R+ F  L +VQGVG + A+ VL  +T  EL  ++  ++   + +  G+  K+
Sbjct: 61  YGFLSKDERKTFQQLLTVQGVGPKAALSVLDILTPHELAIAVAHEDKTKVNKANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGKA+++          V    A   +  S    +++AL+ LG  + Q+  A
Sbjct: 121 AQRIVIELKGKALAIGEAFVPVAPGVVLASASSAASRSG--ESVAALMGLGIPEAQSRQA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V + +K+    A+ + +IR +L+ I
Sbjct: 179 VEAAVKELGPEAELAAVIRASLKLI 203


>gi|323464267|gb|ADX76420.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius ED99]
          Length = 199

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G +  L+  +++++   G+ Y I  P  +      +     ++    +R+D   
Sbjct: 1   MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQMVKVYTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F+ L  V G+G + A+ +L+  +  E+  +I  +N   + Q PGI  K
Sbjct: 60  LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK +    V +  +    +++            A+ AL  LGY + +   
Sbjct: 120 TARQIVLDLKGKVVVTEEVSEGLLDIATEQE------DLAVQEALLALEALGYSKRE-LK 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V   ++++   +D  + ++  L+ +
Sbjct: 173 KVEKAMQQQI-FSDVDEAVKYGLKQL 197


>gi|332883220|gb|EGK03503.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas
           mossii DSM 22836]
          Length = 193

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  L      ++  G+ Y I   + T + +        L++   +R+D  +L
Sbjct: 1   MIDYIKGDIAELTPTSATLETHGIGYFINISLNTYTSI-SGQKSAKLYIYEAIREDAYQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+GA     +LS +T  EL   I   NS ++  + GI  K 
Sbjct: 60  YGFSEKQERELFILLISVSGIGASTGRMILSSMTVQELTNVIASGNSDILKTVKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   +S +   +M     +             AI+ALV LG+ Q  +  A
Sbjct: 120 AQRVIVDLKDKI-KVSGIESVEMFAKTSQAG---------EEAIAALVMLGFPQQASQKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK + + +   Q+I+ AL+ +
Sbjct: 170 VSKILKDKPD-STVEQVIKTALKML 193


>gi|91789933|ref|YP_550885.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666]
 gi|123164397|sp|Q124Q5|RUVA_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91699158|gb|ABE45987.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666]
          Length = 190

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       VL+D  GV Y +  P+ T   L  +G+  +L     +R+D   L
Sbjct: 1   MIGRISGQLAEKNPPEVLVDCNGVGYEVLVPMSTFYNLPGLGEKVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVG R A+ VLS ++  EL +++  Q +  I ++PGI  K 
Sbjct: 61  YGFGSATERAAFRQLIKISGVGPRTALSVLSGMSVEELAQAVTHQEAGRIIKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++            +        + + ALV LGY    A  A
Sbjct: 121 AER-------------LLLELKGKLGADIGVQVSVSSDSQSDILQALVALGYSDRDAALA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++ K        S  I+LAL+A++
Sbjct: 168 LKALPKDIG----VSDGIKLALKALA 189


>gi|148555055|ref|YP_001262637.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1]
 gi|166200267|sp|A5V883|RUVA_SPHWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148500245|gb|ABQ68499.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1]
          Length = 199

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 115/204 (56%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     D+ ++DV GV Y+++C  RTLS +G+ G    LF E  +R+D I L
Sbjct: 1   MIARLRGVLAETSADHAVLDVGGVGYLVWCSARTLSAIGETGGDVLLFTEMQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F LL SVQGVG RVA+ +LS + A EL  ++   +  +IA+  G+  K+
Sbjct: 61  YGFGSAGERDSFRLLTSVQGVGGRVALAILSVLDAGELSRAVAGGDKAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K           ++      A   +    + +A+SAL NLG+   +A+ A
Sbjct: 121 AMRIVNELKDKM--------GGVALGPGLGAAPAAKGGVSTDALSALANLGFRPAEASAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V + +++  + A    ++RLALR 
Sbjct: 173 VGAAIEELGDGATLDAVVRLALRK 196


>gi|262202231|ref|YP_003273439.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM
           43247]
 gi|262085578|gb|ACY21546.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM
           43247]
          Length = 197

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +ID  GV Y +     TLS L + G+  TL     +R+D + L
Sbjct: 1   MIASVRGPVLEVALDHAVIDCGGVGYRVLATPVTLSRL-RRGEESTLLTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM  L+ +    L  ++   ++K +  +PGI  ++
Sbjct: 60  YGFTEPDARALFALLQTVTGVGPRLAMATLAVLEPEALRRALAESDTKALTSVPGIGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K                +    + +          ALV LG+    A  A
Sbjct: 120 AERLVVELRDKVDR----------PTGESAVGVVAPGGVREQVADALVGLGFTAGPAEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL    + AD S  +R +L  +
Sbjct: 170 VAAVLADHPD-ADASTALRQSLSLL 193


>gi|269956459|ref|YP_003326248.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305140|gb|ACZ30690.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 207

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +  D  +IDV GV Y+++    TL+ L + G+   LF    +R++ + L
Sbjct: 1   MIASLTGVVEHVSLDRAVIDVGGVGYLVHATPGTLAGL-RTGERARLFTTMVVREESMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F  D +R  F   QSV GVG R+A+ VL+  T   +  ++  Q+ K + ++PGI  K+
Sbjct: 60  YAFTDDDERALFETAQSVSGVGPRIALAVLAVHTPDAVRRAVHTQDVKALTRVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK  + +                           + ALV LGY    A  A
Sbjct: 120 AQRILLELGGKLGAPTGDGAAGSGATAGTGGDQRGK------VVEALVGLGYPAKTADDA 173

Query: 181 VVSVLKKEKN----IADDSQIIRLALRAI 205
           V  VL          AD +  +R  LR +
Sbjct: 174 VARVLADGGTETVADADVAATLRATLRMM 202


>gi|73748284|ref|YP_307523.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1]
 gi|289432333|ref|YP_003462206.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT]
 gi|90134867|sp|Q3ZZK6|RUVA_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|73660000|emb|CAI82607.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1]
 gi|288946053|gb|ADC73750.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT]
          Length = 194

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 14/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  Y P  + + +G +G    +F   H+R+D + L
Sbjct: 1   MISSLNGILEASGKDWAVINVSGVGFRCYMPATSPALIGGLGQRVRVFTHLHVREDALSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPGI  K 
Sbjct: 61  FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           +SRI+ ELK K               N E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 SSRIILELKDKIAK------------NWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           + S+   +       + I+LAL
Sbjct: 169 ISSL--GDNGDLPLEERIKLAL 188


>gi|256832601|ref|YP_003161328.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM
           20603]
 gi|256686132|gb|ACV09025.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM
           20603]
          Length = 205

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 13/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G ++ +  D  ++ V GV Y++Y    TL+ L + G   TL+    +R+D + L
Sbjct: 1   MIAQLTGIVQKIRLDSAILTVHGVGYLVYATPATLATL-REGQDATLWTSLVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  +Q+V GVG R+A+ +L+   A  L  +++  + K + ++PGI  K+
Sbjct: 60  FGFTDFDERDVFETVQTVSGVGPRLALAMLAIHPAQALRTAVVHADIKALTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  +     S   Q  +   +  A        +   I AL++LG+   QA  A
Sbjct: 120 AQRIVLELSNRMTPPQSETTQTPTTPTEHDA--------SEQVIDALMSLGWNTKQAENA 171

Query: 181 VVSVLKKEK----NIADDSQIIRLALRAI 205
           V  V           A     +R AL+ +
Sbjct: 172 VDQVRADTGQPIITPAQVPATLRAALKIL 200


>gi|147669064|ref|YP_001213882.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. BAV1]
 gi|146270012|gb|ABQ17004.1| Holliday junction DNA helicase subunit RuvA [Dehalococcoides sp.
           BAV1]
          Length = 194

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 14/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  + P  + + +G +G    +F   H+R+D + L
Sbjct: 1   MISSLNGILEASGKDWAVINVSGVGFRCHMPATSSALIGGLGQRVRVFTHLHVREDALSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPGI  K 
Sbjct: 61  FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           +SRI+ ELK K               N E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 SSRIILELKDKIAK------------NWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           + S+   +       + I+LAL
Sbjct: 169 ISSL--GDNGDLPLEERIKLAL 188


>gi|7766817|pdb|1D8L|A Chain A, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region
           Lacking Domain Iii
 gi|7766818|pdb|1D8L|B Chain B, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region
           Lacking Domain Iii
          Length = 149

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 75/146 (51%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV 146
           A R++ E+K +   L   +    + +
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADL 146


>gi|307294738|ref|ZP_07574580.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum
           L-1]
 gi|306879212|gb|EFN10430.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum
           L-1]
          Length = 202

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/204 (36%), Positives = 112/204 (54%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y++    RTL+ LG +G+  T+  E  + +D IRL
Sbjct: 1   MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSEDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL SVQGVG+RVA+ +LS +   EL  S+   +  +IA+  G+  K+
Sbjct: 61  VGFARAEERDWFRLLTSVQGVGSRVALAILSALEPAELHRSVATGDKAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K  ++ +      +          S    + +AISAL NLG+   +A++A
Sbjct: 121 AQRIANELKDKIGAVPT-----PAGGVGGGFAAVSGGGHSADAISALQNLGFKPAEASSA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +   +    A    ++RLALR 
Sbjct: 176 VAAAEGELGEDASLDALVRLALRK 199


>gi|229192632|ref|ZP_04319593.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 10876]
 gi|228590939|gb|EEK48797.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 10876]
          Length = 197

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDENKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -ALTTDQYIKKALSLL 192


>gi|255038209|ref|YP_003088830.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM
           18053]
 gi|254950965|gb|ACT95665.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM
           18053]
          Length = 196

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      Y +IDV GV Y +   ++T + L  IG  C L    ++R+D   L
Sbjct: 1   MIAYVNGIVTYKDPAYAIIDVNGVGYEVRISLQTYTSLPDIGARCKLVTFLNIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +++ F+ L S+ G+G   A+ +LS ++++E+ + II ++ ++I  I GI  K 
Sbjct: 61  YGFWGNDEKKLFLDLTSISGIGPSTALVMLSSLSSSEIRQGIIDEDLRLIQSIKGIGSKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K      V     S          S  +    A++ALV LG  +  A  +
Sbjct: 121 AQRVILELRDKIRKEELVSTGPRSVE-------ASSNTLRSEALAALVTLGIPKATAEKS 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + +++K+E        +I+LALR
Sbjct: 174 LDAIIKREGPSISVENLIKLALR 196


>gi|313673192|ref|YP_004051303.1| holliday junction DNA helicase ruva [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939948|gb|ADR19140.1| Holliday junction DNA helicase RuvA [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 192

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 106/206 (51%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K++G +     +Y+++DV G+ + I   +   + L  +     +   T +R+D I +
Sbjct: 1   MIAKLRGKLHEKKPNYIILDVNGIFFEISISLNCFTSLPDLNSELIISTYTIVREDGISI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+D +++ F+LL SV  VG ++A+ +LS     +L  +I  ++  +IA  PG+  K 
Sbjct: 61  YGFLNDDEKRLFLLLNSVSKVGPKLALSILSTCEIVKLKSAIKNRDINLIATAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K      V+  D   ++              + ISALVNLGY +  A +A
Sbjct: 121 AERIILELRDKIEEFEVVMDADTGGLD-------------DDIISALVNLGYKKVDALSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +  + K      + +R AL+ ++
Sbjct: 168 LKRLDDRYKTF---EERLREALKLLN 190


>gi|304317016|ref|YP_003852161.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778518|gb|ADL69077.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 188

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     DYV+++  G+ + I  P  TL  L    D   L+   H+++D  + 
Sbjct: 1   MIDYIKGAIVERGIDYVVVETLGIGFKIIVPTSTLRELPNTNDIIKLYTYLHVKEDGFQF 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F  L +V GVG + A+ +LS I+      +I   +SK+I + PGI  K 
Sbjct: 61  YGFLTINEMEIFKKLIAVNGVGPKAAVSILSTISIDNFYNAIKNGDSKIIEKSPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                   A    +   + + ++AL++LGY + ++ +A
Sbjct: 121 AQRIILELKDKLFI--------------NNAEAVKIDDASEDVLNALLSLGYTRQESISA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +     +  +    +R AL+ +
Sbjct: 167 LYGI-----DCTNTENALREALKKL 186


>gi|325963419|ref|YP_004241325.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469506|gb|ADX73191.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 214

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +ID+ G    +    +TLS L + G+   LF    +R+D + L
Sbjct: 1   MISFLRGTVAHVGLSTAVIDLNGAGMSVNATPQTLSGL-RTGEEGQLFTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R+ F +L SV GVG R+A+ VL+      +  +    +SK   ++PGI  K+
Sbjct: 60  FGFASDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDSKTFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +                 A   +  S+    ++A+ +LG+ +  A+ +
Sbjct: 120 AGRIVLELAGKLVP--------QGTAGTAAAPTAAEASWKPQVVAAMTSLGWSEKDASAS 171

Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205
           +   L  E  ++   +  +I+R  LR +
Sbjct: 172 IDKALADEPEVSFRGNVPEILRTTLRWL 199


>gi|325672616|ref|ZP_08152312.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus
           equi ATCC 33707]
 gi|325556493|gb|EGD26159.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus
           equi ATCC 33707]
          Length = 201

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + GD   L     +R+D + L
Sbjct: 1   MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM +L+ +    L +++   N   + ++PGI  + 
Sbjct: 60  YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++      ++          S        + AL  LG+  + A  A
Sbjct: 120 AERMVVELRDKVEAVA------VTGDLPGAGAATSASIVRDQVVEALTGLGFKLEHAEKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V+  +   A  S ++R AL  +
Sbjct: 174 TDTVVAADPE-APTSTVLRSALALL 197


>gi|313890377|ref|ZP_07824008.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121220|gb|EFR44328.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 197

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++V G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGQLTKITAKYIVVEVNGLGYIIYV-ANPYSFTDSVNQNVTVYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +      QQ           +         AI AL+ LGY   +    
Sbjct: 120 AQQMILDLAGKFVDNPEPGQQQSQAKRNSNHQL-------DEAIEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +  +  A   Q I+ AL+ +
Sbjct: 172 IRAFFEGTEETA--EQYIKSALKML 194


>gi|34580551|ref|ZP_00142031.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246]
 gi|28261936|gb|EAA25440.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246]
          Length = 203

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLALEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS      + + +        P  +   I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197


>gi|167751984|ref|ZP_02424111.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216]
 gi|167660225|gb|EDS04355.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216]
          Length = 194

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  L   + ++DV GV Y +   ++T S + +  D   LFV   +R+D   L
Sbjct: 1   MYEYLSGTISELAPTHAVLDVGGVGYFLQISLQTYSEI-EHSDRVKLFVHYVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L SV GVG   A  +LS  +  EL   I  +N+ ++  + G+ +K 
Sbjct: 60  YGFASKAERELFRHLISVSGVGGNTARMILSTYSPRELQGIIATENAVLLKNVKGLGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL GK   L          +  +             A++ALV LG+G+  A   
Sbjct: 120 AQKIIVELSGKMAGLG---------LTGDTVTAPVAGGDYEEALAALVMLGFGKAAADKV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++ +E   A    ++R++L+ +
Sbjct: 171 V-KIVARENPGASVEDLVRMSLKRL 194


>gi|110597586|ref|ZP_01385871.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM
           13031]
 gi|110340706|gb|EAT59183.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM
           13031]
          Length = 200

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  L  +  +++V G+ Y       T   L + G    L+    +R+D  +L
Sbjct: 1   MFAYFRGRLVSLLPEEAVVEVSGIAYRFLISASTSRQLPETGSEVLLYSHLSVREDAHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +RQ F LL    GVG ++A+ VLS +   E+ ++I+    + +  I G+  K 
Sbjct: 61  YGFITEAERQMFRLLILTSGVGPKLALAVLSGLQVAEVYDAILANTPERLYGITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + LS         +    A + S      +AI+ALV LG+ +     A
Sbjct: 121 AARIILELRDKILKLSP-----AGTIAAPSAQLSSR--MRDDAINALVTLGFSRVTVQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V S+L+K  +     ++I+ AL
Sbjct: 174 VDSILEKN-SALSVEEVIKSAL 194


>gi|297559814|ref|YP_003678788.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844262|gb|ADH66282.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 206

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +IDV GV   + C    LS L  +G+  T+     +R++ + L
Sbjct: 1   MIAFLTGRVAARGAGTAVIDVGGVGMTVQCTPSALSRL-HVGETGTVATSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D ++  F  LQ+  GVG R+A+ +LS  + + L  ++  +++  + ++PGI  K 
Sbjct: 60  FGFADDDEKHLFEQLQTASGVGPRLALAMLSVHSPSSLRHAVSTEDTTALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178
           A RI+ EL+GK   L + V  D +    E A   S P  ++    +S LVNLG+    A 
Sbjct: 120 AQRIVLELRGK---LDAPVLTDGTLPGSEAAGTGSEPNGAWRGQVVSGLVNLGWSAKDAE 176

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A  +V  + ++  D + ++R ALR +S
Sbjct: 177 AAASAVAAEAEHTDDVAVLLRSALRRLS 204


>gi|47097030|ref|ZP_00234603.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str.
           1/2a F6854]
 gi|254898301|ref|ZP_05258225.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes J0161]
 gi|254912207|ref|ZP_05262219.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818]
 gi|254936535|ref|ZP_05268232.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900]
 gi|47014612|gb|EAL05572.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609129|gb|EEW21737.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900]
 gi|293590180|gb|EFF98514.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818]
          Length = 201

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGIEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+    +D    I+LAL+ +
Sbjct: 177 IPKLAKEADLTSD--AYIKLALQLM 199


>gi|290769835|gb|ADD61608.1| putative protein [uncultured organism]
 gi|291542961|emb|CBL16071.1| Holliday junction DNA helicase, RuvA subunit [Ruminococcus bromii
           L2-63]
          Length = 200

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +  +  +  +++  GV Y+    + TL  + K+    TL+   ++R+D + L
Sbjct: 1   MLYSVRGKLIAIESNAAVVECGGVGYMCQTTMNTLKAV-KLNTEVTLYTYLNVREDAVDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F  L SV GVG +  + VLS ++  ++  +I   + K I +  GI  KI
Sbjct: 60  FGFATKAELETFKNLISVSGVGPKAGLAVLSELSPEQVAMAIASDDLKTITRAQGIGKKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   L+   ++D S     Q  +         AI AL  LGY        
Sbjct: 120 AQRIVLELKDK---LAKAAKEDSSFAQAAQNSVNVSTGNVPKAIEALGVLGYSPSD---- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL    +     Q+I L L+ +
Sbjct: 173 VSPVLATLDSALPVEQLISLTLKQM 197


>gi|126737218|ref|ZP_01752953.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           SK209-2-6]
 gi|126721803|gb|EBA18506.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           SK209-2-6]
          Length = 228

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 21/226 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +D++LIDV GV YI+YC  RTL+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRTQDHILIDVHGVGYIVYCSERTLAALPGTGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFTSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK------EQAHICSMPSFAINA----------- 163
           A RI+ +LK KA ++ ++       ++       E+A   +  S    A           
Sbjct: 121 AQRIVLDLKDKAPAVMAMGGSVADAMDGPGLEVIEEAEPAATKSARKTAPKKPSGAAAAS 180

Query: 164 ---ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              +SAL NLGYG   A  AV        + AD++++IR ALR ++
Sbjct: 181 AGALSALGNLGYGPSDAAAAVAEAAATYPD-ADEAELIRAALRLLA 225


>gi|228923173|ref|ZP_04086464.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228941589|ref|ZP_04104137.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228960694|ref|ZP_04122338.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228967497|ref|ZP_04128525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228974518|ref|ZP_04135085.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981112|ref|ZP_04141413.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis Bt407]
 gi|228987674|ref|ZP_04147786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229111893|ref|ZP_04241439.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-15]
 gi|229129701|ref|ZP_04258669.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-Cer4]
 gi|229146992|ref|ZP_04275354.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST24]
 gi|229152624|ref|ZP_04280813.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1550]
 gi|229158036|ref|ZP_04286107.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 4342]
 gi|229175095|ref|ZP_04302612.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           MM3]
 gi|228608391|gb|EEK65696.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           MM3]
 gi|228625489|gb|EEK82245.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 4342]
 gi|228630885|gb|EEK87525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1550]
 gi|228636489|gb|EEK92957.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST24]
 gi|228653818|gb|EEL09688.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-Cer4]
 gi|228671649|gb|EEL26947.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-15]
 gi|228772059|gb|EEM20513.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228778653|gb|EEM26919.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis Bt407]
 gi|228785235|gb|EEM33247.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228792212|gb|EEM39786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228799000|gb|EEM45973.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228818096|gb|EEM64173.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228836552|gb|EEM81902.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 197

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|85709397|ref|ZP_01040462.1| Holliday junction DNA helicase motor protein [Erythrobacter sp.
           NAP1]
 gi|85688107|gb|EAQ28111.1| Holliday junction DNA helicase motor protein [Erythrobacter sp.
           NAP1]
          Length = 228

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++ + ED+ ++DVQGV Y+++C  RTLS LG+ G+ CT+  +  + ++ +RL
Sbjct: 27  MIAKLSGRLDEIGEDWAIVDVQGVGYLVHCSARTLSALGEKGEACTVHTDLQVSENDMRL 86

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG++V + +LS ++  EL ++    ++  +A+  G+  K+
Sbjct: 87  LGFAESAERDWFRLLTQVQGVGSKVGLAILSALSTGELRDACAAGDAASVARANGVGPKL 146

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  +L       +       A   S  +     +SAL NLG+    A  A
Sbjct: 147 AGRIVNELKDKVGALPGGGMAGVPMGAAAPAGSASADA-----VSALENLGFKPAIAAQA 201

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V     +    A +  +IR+AL+  + 
Sbjct: 202 VARATAELGEDAPEGDLIRVALKKAAS 228


>gi|126700422|ref|YP_001089319.1| Holliday junction DNA helicase RuvA [Clostridium difficile 630]
          Length = 203

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 4   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  +  +L   I+ ++   +++ PG+  K 
Sbjct: 63  CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   +  +                   ++ ALV LGY   ++  A
Sbjct: 123 AERIVLELKDKVDKNNIEFEPTL-------LSQKPTLISQDESVDALVALGYTLSESKEA 175

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K   N      II+ AL
Sbjct: 176 VQKCKKDGMN---TEAIIKKAL 194


>gi|318041282|ref|ZP_07973238.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0101]
          Length = 220

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 105/215 (48%), Gaps = 9/215 (4%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G +   ++      +L+   GV Y ++ P R    LG+ G   +L +   +R+D
Sbjct: 1   MIGWLQGQLADRWQQASRCGLLLVCGGVGYEVHLPRRQWERLGETGTELSLHIHQVIRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  F  L +V GVG ++A+G+L +++  ELV +I+  + +++ Q PG+
Sbjct: 61  AWTLYGFASRAERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRLLTQAPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVN---KEQAHICSMPSFAINAIS-ALVNLGY 172
             + A R+  EL+ +       V       +          ++PS   + ++  L  LGY
Sbjct: 121 GKRTAERLAVELRTRLQERYGSVANPEDTADLALPASGSAEALPSAVRDEVNLTLTALGY 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAIS 206
              +   A+ +V   E+++   +   +R  LR +S
Sbjct: 181 EALEINRALRAVATTEEDLGQGADAWLRECLRWLS 215


>gi|157825657|ref|YP_001493377.1| Holliday junction DNA helicase RuvA [Rickettsia akari str.
           Hartford]
 gi|166200253|sp|A8GN94|RUVA_RICAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157799615|gb|ABV74869.1| Holliday junction DNA helicase motor protein [Rickettsia akari str.
           Hartford]
          Length = 203

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 123/203 (60%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DY++IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKIDAQGDDYIIIDVNGVGYLVYASGKTLGKLSE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T T++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLTIEEKNFFNLLQSVNGIGTRMALSILSNLTPTDIQIAINNEDKDIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +S+      + +N            +   I ALVNLG+ + +A  +
Sbjct: 120 AERIVLELKGKVAKIST----GAAIINDSLNIKNITSVASNEVIKALVNLGFSRFEAQNS 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 176 VQGIVIQNPEISID-ELIKTALK 197


>gi|307326761|ref|ZP_07605953.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu
           4113]
 gi|306887524|gb|EFN18518.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu
           4113]
          Length = 206

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 15/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  +I+V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAAVAPDTAVIEVGGIGMALQCTPATLAGL-RVGQQARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDVLRLAVSTGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +          +        A   + P ++    +ALV LGY   +A  A
Sbjct: 120 AQRLLLELKDRL--------GEPLGSAVPSARSAAAPGWSDQLHTALVGLGYATREADEA 171

Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAIS 206
           V +V  + +           + ++R AL+ ++
Sbjct: 172 VAAVTPQAEEAVAAGGKPQVALLLRAALQTLN 203


>gi|255325096|ref|ZP_05366202.1| holliday junction DNA helicase RuvA [Corynebacterium
           tuberculostearicum SK141]
 gi|255297661|gb|EET76972.1| holliday junction DNA helicase RuvA [Corynebacterium
           tuberculostearicum SK141]
          Length = 205

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +ID  GV Y      +TL  L + G+  T+     +++D + L
Sbjct: 1   MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGAEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K    +         V  E A   +  +   +   ALV LG+    A   
Sbjct: 120 AQRLALELKDKVAGFAPSEPAAAGSV--ETAIAPAGGAVVESVTEALVGLGFTDKGARPV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S   +  ++ D S ++R AL  +
Sbjct: 178 VESAYAENPDV-DTSSLLRAALAQL 201


>gi|255101977|ref|ZP_05330954.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-63q42]
 gi|255307845|ref|ZP_05352016.1| Holliday junction DNA helicase RuvA [Clostridium difficile ATCC
           43255]
 gi|328887746|emb|CAJ69694.2| Holliday junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile]
          Length = 200

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  +  +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   +  +                   ++ ALV LGY   ++  A
Sbjct: 120 AERIVLELKDKVDKNNIEFEPTL-------LSQKPTLISQDESVDALVALGYTLSESKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K   N      II+ AL
Sbjct: 173 VQKCKKDGMN---TEAIIKKAL 191


>gi|229081685|ref|ZP_04214180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-2]
 gi|228701689|gb|EEL54180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-2]
          Length = 197

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -ALTTDQYIKKALSLL 192


>gi|119961641|ref|YP_948037.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1]
 gi|119948500|gb|ABM07411.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1]
          Length = 231

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 12/207 (5%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +  +     +ID+ G    +Y   +TLS L K G    LF    +R+D + LF
Sbjct: 19  ISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSHL-KTGSEAKLFTSMIVREDSLTLF 77

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF  D +R+ F +L SV GVG R+A+ VL+      +  +    +SK   ++PGI  K+A
Sbjct: 78  GFADDDEREVFDVLLSVSGVGPRLALAVLAVHEPEAIRVAAHTGDSKTFTKVPGIGPKVA 137

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI+ EL GK +   +      +     +        +    ++A+ +LG+ +  A  ++
Sbjct: 138 GRIVLELAGKLVPHGTSTGTAPAAAPNAE--------WKPQVVAAMTSLGWSEKDANGSI 189

Query: 182 VSVLKKEKNIAD---DSQIIRLALRAI 205
              +     + D    +QI+R  LR +
Sbjct: 190 DKAMADSPELVDAGNVAQILRATLRWL 216


>gi|222097866|ref|YP_002531923.1| holliday junction DNA helicase ruva [Bacillus cereus Q1]
 gi|228917058|ref|ZP_04080617.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929466|ref|ZP_04092487.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228948135|ref|ZP_04110419.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229093493|ref|ZP_04224596.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-42]
 gi|229123962|ref|ZP_04253154.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           95/8201]
 gi|229163369|ref|ZP_04291321.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           R309803]
 gi|229186660|ref|ZP_04313821.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BGSC 6E1]
 gi|229198549|ref|ZP_04325252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1293]
 gi|221241924|gb|ACM14634.1| holliday junction DNA helicase [Bacillus cereus Q1]
 gi|228584934|gb|EEK43049.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1293]
 gi|228596919|gb|EEK54578.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BGSC 6E1]
 gi|228620150|gb|EEK77024.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           R309803]
 gi|228659264|gb|EEL14912.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           95/8201]
 gi|228689964|gb|EEL43768.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-42]
 gi|228811493|gb|EEM57830.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228830254|gb|EEM75870.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842586|gb|EEM87675.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 197

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|119356229|ref|YP_910873.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides
           DSM 266]
 gi|166230538|sp|A1BDH2|RUVA_CHLPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119353578|gb|ABL64449.1| Holliday junction DNA helicase subunit RuvA [Chlorobium
           phaeobacteroides DSM 266]
          Length = 200

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG++     +  +IDV GV Y +     T   L   G    L+    +R+D ++L
Sbjct: 1   MFAYFKGSLVTALPEEAVIDVSGVAYRMLISATTFRQLPDEGSQVLLYAHLSVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +RQ F LL    GVG ++A+ VLS +   E+ E+I+    + +  + G+  K 
Sbjct: 61  YGFFKEEERQLFRLLLLTSGVGPKLALAVLSGLQVPEVHEAIMANEPERLYGVSGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + L  V                       +A+ ALV LG+ +  A  A
Sbjct: 121 AARIILELRDKILKLPLVTPAAGKAAMPSH-------HVKDDAVHALVTLGFSRLLAQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V ++L+++       ++I+ AL
Sbjct: 174 VSALLEEKPEQ-SVEEVIKYAL 194


>gi|149185526|ref|ZP_01863842.1| probable holliday junction DNA helicase protein [Erythrobacter sp.
           SD-21]
 gi|148830746|gb|EDL49181.1| probable holliday junction DNA helicase protein [Erythrobacter sp.
           SD-21]
          Length = 201

 Score =  207 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 114/204 (55%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y+++C  +TLS LG+ G+ CT++ +  + ++ +RL
Sbjct: 1   MIAKLKGLLDETGADWAVIDVSGVGYLVHCSTKTLSKLGEKGEACTVYTDLQVSENDMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG++VA+ +LS ++  E+ ++    ++  +A+  G+  K+
Sbjct: 61  LGFAEAAERDWFRLLTQVQGVGSKVALAILSALSTGEVQQACSNGDAATVARAQGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +L        +          +      +A+SAL NLG+    A  A
Sbjct: 121 AGRIVNELKDKAGALPGGGVGGGTAPATPAGGASA------DAVSALENLGFKPAVAARA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +   +    A +  +IR+AL+ 
Sbjct: 175 VAAAQGELGEGASEGDLIRVALKR 198


>gi|262341131|ref|YP_003283986.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272468|gb|ACY40376.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 196

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +    + Y++ID  GV Y I+  + T S L  + G    +     ++ +Q  
Sbjct: 1   MITHLRGKLIEKNQSYLIIDCHGVGYHIHISLYTHSSLLEEEGKDICIHTYLFIKDNQHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF   ++R+ F  L SV G+G   A+ +LS +T  E+ +SI  ++ K   ++ GI  K
Sbjct: 61  LYGFFDKIERKIFSYLISVNGIGPSSAIMLLSSLTPYEIEKSISKEDIKAFDKVKGIGTK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K                K+  +  +  S    A+SAL  LG+   ++  
Sbjct: 121 TAQRIIIELKDKFTK---------EIFYKKVKNENTPYSIKKEALSALSVLGFSTKESKK 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +  +L +         +I+ +L+ +
Sbjct: 172 ILDDILNEHPEF-SVENLIKESLKKL 196


>gi|255656790|ref|ZP_05402199.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-23m63]
 gi|296452380|ref|ZP_06894081.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP08]
 gi|296877729|ref|ZP_06901756.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP07]
 gi|296258710|gb|EFH05604.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP08]
 gi|296431262|gb|EFH17082.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP07]
          Length = 200

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  +  +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   +  +                   ++ ALV LGY   ++  A
Sbjct: 120 AERIVLELKDKVDKNNIEFEPTL-------LSQKPTLISQDESVDALVALGYTLAESKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K   N      II+ AL
Sbjct: 173 VQKCKKDGMN---TEAIIKKAL 191


>gi|213163229|ref|ZP_03348939.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 174

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 3/175 (1%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P+     L + G    +F    +R+D   L+GF +  +R  F  L    GVG ++A+ +
Sbjct: 1   MPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAI 60

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L   +      +   
Sbjct: 61  LSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLT 120

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                +       A++ALV LGY   +A+  V  + + +   A    +IR ALRA
Sbjct: 121 SPASPTSEDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSETLIRDALRA 172


>gi|89053456|ref|YP_508907.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1]
 gi|123094354|sp|Q28TT0|RUVA_JANSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|88863005|gb|ABD53882.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1]
          Length = 223

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 20/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+ LIDV GV Y+++C  RTL+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYKGSDHALIDVGGVGYVVHCSDRTLAALPARGEVVALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  +++W  LL SVQGVGA+ +M +L  +       +I L ++  I   PG+  K+
Sbjct: 61  FGFLSPYEKEWHRLLTSVQGVGAKASMAILGTLGVEGAARAITLGDATAIKAAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-----------------SMPSFAINA 163
           A R++ ELK KA ++ ++       ++     +                     +    A
Sbjct: 121 AQRVVMELKDKAPAVMAMGGTLDDAMDDVVDDMPGESAAPAPAPQPRAPKRPASNAQAEA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SAL NLGYG   A     +V +  ++ ++  ++IR ALR ++
Sbjct: 181 LSALQNLGYGPSDAA---QAVAQAAESASNTPELIRAALRLLA 220


>gi|153003861|ref|YP_001378186.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5]
 gi|166229629|sp|A7H906|RUVA_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152027434|gb|ABS25202.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5]
          Length = 197

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D+V++DV GV Y+++    +L+ L   G   TL + T++RQD I L
Sbjct: 1   MIARLAGKVAEKGADHVVLDVGGVGYLVHLSAVSLAGLPPQGGDGTLRIFTNVRQDAIEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++PGI  K 
Sbjct: 61  YGFASEDEEAVFRALIDVKGVGPRAAQNILSGIDARELAQAVAGSDVARLTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L+              A              ALVNLGY   QA  A
Sbjct: 121 AERLVVELKEKLALLARAAG---------PARAKPGAGVVEQLRQALVNLGYKPPQADAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               L+ E       +++R AL+ +
Sbjct: 172 -ADALRDEAEGKKLDELLREALKRL 195


>gi|41407135|ref|NP_959971.1| Holliday junction DNA helicase motor protein [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118465009|ref|YP_882656.1| Holliday junction DNA helicase RuvA [Mycobacterium avium 104]
 gi|81414560|sp|Q741Q1|RUVA_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230566|sp|A0QIB8|RUVA_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|41395486|gb|AAS03354.1| RuvA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118166296|gb|ABK67193.1| holliday junction DNA helicase RuvA [Mycobacterium avium 104]
          Length = 199

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFTDAETRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGDVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +  +      +  N                + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKIGAAGAAGAPAGAARNGHAVRGP--------VVEALVGLGFAAKQAEEA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  E   A  S  +R AL  +
Sbjct: 172 TDKVLAAEPE-AGTSGALRAALSLL 195


>gi|319442165|ref|ZP_07991321.1| Holliday junction DNA helicase RuvA [Corynebacterium variabile DSM
           44702]
          Length = 214

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+V+I+  GV Y+     RTL+ L + G+   +     +R+D   L
Sbjct: 1   MIASLRGAVVDKGLDHVVIECAGVGYLCQATARTLADLPR-GEEVFVLTTMVVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F     R+ F L+QSV GVGAR+AM +LS +T  E+  ++   + K + + PG+  ++
Sbjct: 60  YAFPDVASRELFALVQSVSGVGARMAMALLSVLTPAEIAAAVAEGDVKTLQRAPGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R+  +LKGK  + +           V+          +     + ALV LG+ +  A 
Sbjct: 120 ADRMSVDLKGKLDAYAVAQPSGAPGDAVDLTSGDAAVDDAVTAQVVEALVGLGFPEASAA 179

Query: 179 TAVVSVLKK----EKNIADDSQIIRLALRAI 205
             V S++ +    + +  D S ++R AL  +
Sbjct: 180 DTVTSLVAETGGGDGSSPDASVLLRSALSRL 210


>gi|313159381|gb|EFR58745.1| Holliday junction DNA helicase RuvA [Alistipes sp. HGB5]
          Length = 194

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y +ID  GV Y ++  + T S +    +   L+V   +R+D   L
Sbjct: 1   MYEYISGPVAEVAPAYAVIDAGGVGYYLHISLETFSAIEHT-ETARLYVHYVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L SV GVG   A  +LS  +  EL   I   N+ ++  + G+ +K 
Sbjct: 60  YGFATKTERELFRHLISVSGVGGNTARMILSTYSPRELQGIITSGNAVLLKNVKGLGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL GK   L        +  N E+            A++ALV LG+ +  A  A
Sbjct: 120 AQKIIVELSGKLTGLGDADAALPAAGNGEKL---------EEALAALVMLGFAKTAAEKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +L++    A    ++R+ L+++
Sbjct: 171 LRGILRENPG-ASVEDLVRMGLKSL 194


>gi|226366281|ref|YP_002784064.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4]
 gi|254767383|sp|C1B4D0|RUVA_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226244771|dbj|BAH55119.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4]
          Length = 200

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GTEARLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPEALRSALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  ++        S             S     + ALV LG+   QA  A
Sbjct: 120 AERMVVELRDKVDAVG-------STSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SVL +       S + R AL  +
Sbjct: 173 TDSVLAEAPESTTSSAL-RSALSLL 196


>gi|222109711|ref|YP_002551975.1| holliday junction DNA helicase ruva [Acidovorax ebreus TPSY]
 gi|254766958|sp|B9MCH5|RUVA_DIAST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221729155|gb|ACM31975.1| Holliday junction DNA helicase RuvA [Acidovorax ebreus TPSY]
          Length = 190

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +   + T   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVLVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +      + + AL+ LGY   +A   
Sbjct: 121 AER-------------LLLELKGKLGADVGVRAHAANDNQADILQALLALGYNDKEA--- 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             + LK        S+ I+LAL+++S
Sbjct: 165 -AAALKALPADVGVSEGIKLALKSLS 189


>gi|229071929|ref|ZP_04205140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           F65185]
 gi|228711225|gb|EEL63189.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           F65185]
          Length = 197

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDAERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -ALTTDQYIKKALSLL 192


>gi|212550754|ref|YP_002309071.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229470529|sp|B6YR38|RUVA_AZOPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212548992|dbj|BAG83660.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 196

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG I  L  D V+I+   + Y+++  + T   L KI   C L++   +R++  +L
Sbjct: 1   MLDFIKGEIVELIPDSVIIETGNIGYMLFISLNTYFSLTKIKS-CKLYIYEVIREETHQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +RQ F  L SV GVGA +A  VLS ++  EL E I   N   +  + GI  K 
Sbjct: 60  FGFIDKKERQLFTHLISVPGVGANIARMVLSSLSVCELEEIIFSGNVSALQALKGIGNKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K     ++   D    N          +    AI+AL+ LG+ Q  +   
Sbjct: 120 AERIIIDLKDKV-KPDNIPSSDTIITN-------ISSNITKEAITALITLGFSQSASQKV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++    +     QII+ AL+ +
Sbjct: 172 VNKIVSNNSSSTTIEQIIKKALKLL 196


>gi|229032072|ref|ZP_04188054.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1271]
 gi|228729264|gb|EEL80259.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1271]
          Length = 197

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           + +  +YV+ID  G+ Y I+ P        +      +F   ++R+D + L+GF +  +R
Sbjct: 2   DYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVFTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|261418393|ref|YP_003252075.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61]
 gi|319767648|ref|YP_004133149.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52]
 gi|261374850|gb|ACX77593.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61]
 gi|317112514|gb|ADU95006.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52]
          Length = 194

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    +         T++   ++R+    L
Sbjct: 1   MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK                        +      A++AL  LGY + +    
Sbjct: 120 ARQMILDLKGKL---------GALAAPAAARSAAPLSGALAEAVAALKALGYAEREIEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K+  +     Q ++ AL  +
Sbjct: 171 IPALRKEAMS---TEQYVKRALALL 192


>gi|134098596|ref|YP_001104257.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008207|ref|ZP_06566180.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|166200258|sp|A4FBA7|RUVA_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|133911219|emb|CAM01332.1| Holliday junction DNA helicase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 200

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+V GV   ++    TL+ L + G+   L+    +R+D + L
Sbjct: 1   MIASVRGPVLSVGLDHAVIEVGGVGMAVHATPATLAGL-RRGEEARLWTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+  GVG R+A+  L+ +   +L  ++   N   + Q+PG+  K 
Sbjct: 60  YGFADAEARDLFGLLQTASGVGPRLALATLAVLAPDQLCHALSDGNITTLTQVPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++          ++                 ALV LG+   QA  +
Sbjct: 120 AERLILELRDKVGTVAGTAGAGAQAPDR--------GRVRSEVSEALVGLGFSAKQAEQS 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL  +  ++D S ++R AL A+
Sbjct: 172 VEAVLAADGPVSDTSAVLRKALAAL 196


>gi|313901946|ref|ZP_07835363.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467792|gb|EFR63289.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus
           DSM 13965]
          Length = 221

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 5/192 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G + G + D   IDV GV + +    +T   L  +G+   L     +R+DQ  L
Sbjct: 1   MIAFLRGELAGFHGDEAWIDVGGVGFRVAVSRQTQRRLPPVGEPVRLLTRLVVREDQWSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V GVG RVA+ VLS +T  +L  +++LQ+  ++ ++PG+  K+
Sbjct: 61  YGFATADEQAAFDALVAVSGVGPRVALSVLSVLTPEDLRRAVVLQDPALLTRVPGVGPKL 120

Query: 121 ASRIMTELKGKAI-----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A R++TEL+ +         ++             +      S   +A++AL  LGY + 
Sbjct: 121 ARRLLTELRDRLGQPLAEDGAAGGPAATGTAGAVPSPGTGEASPRDDALAALEALGYSRA 180

Query: 176 QATTAVVSVLKK 187
           +A  A+ +V  +
Sbjct: 181 EAEGALAAVAGQ 192


>gi|229817634|ref|ZP_04447916.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM
           20098]
 gi|229785423|gb|EEP21537.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM
           20098]
          Length = 205

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +E +     +I+V  V Y +  P   LS L   G    ++   ++ QD I L
Sbjct: 1   MIGSLRGTVEMVDTTQAVIEVGSVGYEVRMPSADLSRL-HTGQETRVWTYLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    ++ F+ L  V GVG +VA+ +LS +TA +L +++   ++  +A+ PGI  K 
Sbjct: 60  YGFLDSSSKKMFLQLIKVNGVGPKVALSLLSTLTANDLAKAVADNDATALAKAPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG      S+  +D+     +     S    A   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG------SINLEDLGEKAPQSG--ASTDPGAKQVVEGLMSLGWHQQDAQYA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V    +        +  D  Q++RLAL ++
Sbjct: 172 VQEACESNGIAMPLSQEDVPQVLRLALTSL 201


>gi|225023395|ref|ZP_03712587.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC
           23834]
 gi|224943873|gb|EEG25082.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC
           23834]
          Length = 193

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G +       V+IDV GV Y     ++T   L  +G+  +L+ +  +R+D   L
Sbjct: 1   MISKLTGKLIEAIPPQVVIDVNGVAYEADVSMQTFYTLPPVGETVSLYTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL  +I  ++ K ++  PGI  K 
Sbjct: 61  FGFGSHSERNTFRQLIKVSGIGAKTALGILSAMNADELAAAIAAEDIKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK  + + V  Q  +               + + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLTTFNGVQTQLAAQAG----------DSSEDIVSTLLALGYNEKEARAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 171 TKGI----PADTEVGEGVRLALKNL 191


>gi|332670539|ref|YP_004453547.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484]
 gi|332339577|gb|AEE46160.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484]
          Length = 204

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D  +++V GV  ++     TL+ L ++G   TL     +R+D + L
Sbjct: 1   MIASVRGTVLAVRLDSAVVEVGGVGMLVQATPATLAGL-RVGAQATLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F ++Q+V GVG R+A+ +L+  T   L  ++  ++   + ++PGI  K 
Sbjct: 60  FGFADADEREVFEVVQTVSGVGPRLALAMLAVHTPDGLRRAVAGEDLAALMRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  +  +         S          +        + ALV LG+    A  A
Sbjct: 120 AQRIVLELGDRLGA--------PSGAGAPATSSAASDDRRDQVVEALVGLGWNAKAAGDA 171

Query: 181 VVSVLKKEKN---IADDSQIIRLALRAI 205
           V +VL+         + + ++R ALR +
Sbjct: 172 VSAVLQDAPGPVAADEVAGVLRAALRTL 199


>gi|229135245|ref|ZP_04264043.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST196]
 gi|228648223|gb|EEL04260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST196]
          Length = 197

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|163840742|ref|YP_001625147.1| Holliday junction DNA helicase RuvA [Renibacterium salmoninarum
           ATCC 33209]
 gi|189045763|sp|A9WSE5|RUVA_RENSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|162954218|gb|ABY23733.1| holliday junction DNA helicase [Renibacterium salmoninarum ATCC
           33209]
          Length = 214

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +IDV GV  ++    +TL  L ++G   TL     +R+D + L
Sbjct: 1   MISFLRGPVAHIGLSAAVIDVGGVGMLVQATPKTLGTL-RLGQESTLTTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F +L +V G+G R+ + VL+ +    +  +    + K   ++PGI  K+
Sbjct: 60  YGFADPDEREVFEILLTVSGIGPRLGLAVLAVLEPETIRVATSTGDGKTFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +   +V            A       +    ++A+ +LG+ +  A  +
Sbjct: 120 AGRIVLELAGKLVPHGTV----------NGAPASPSAQWKPQVVAAMTSLGWSEKDALAS 169

Query: 181 VVSVLKKEKNIADD---SQIIRLALRAI 205
           V         +  D   ++I+R  LR +
Sbjct: 170 VEKATADSPELISDGNVAEILRTTLRWL 197


>gi|228910257|ref|ZP_04074075.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 200]
 gi|228849421|gb|EEM94257.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 200]
          Length = 197

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V+++  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAVEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|229062116|ref|ZP_04199441.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH603]
 gi|228717268|gb|EEL68943.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH603]
          Length = 197

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTESFDAKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|24380422|ref|NP_722377.1| Holliday junction DNA helicase RuvA [Streptococcus mutans UA159]
 gi|44888487|sp|Q8CWW3|RUVA_STRMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24378447|gb|AAN59683.1|AE015030_13 putative Holliday junction DNA helicase RuvA [Streptococcus mutans
           UA159]
          Length = 197

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKGN+  +   Y++++  G+ Y+I       S   +I     +++   +R+D   L
Sbjct: 1   MYDYIKGNLTKITAKYIVLETGGLGYVINV-ANPYSFSNQINQAIQIYIHHVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV++I   +   + + P I  K 
Sbjct: 60  YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + ++ V        +K +    +       A+ AL+ LGY  ++    
Sbjct: 120 AQQMVLDLAGKFVDINEV------STDKSKVSTINNNQELEEAVEALLALGYKTNE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIEKFFEGTTDTAENYIKSALKML 195


>gi|89899549|ref|YP_522020.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118]
 gi|123091484|sp|Q220R4|RUVA_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89344286|gb|ABD68489.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118]
          Length = 190

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++      V++D  GV Y +  P+ T   L ++G   +L     +R+D   L
Sbjct: 1   MIGKLSGTLDDKNPPQVIVDCHGVGYEVLVPMSTFYNLPELGARVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG R A+ VLS ++  EL +++ LQ    + ++PGI  K 
Sbjct: 61  YGFATSQERAAFRELIKISGVGPRTALSVLSGMSVAELAQAVTLQEGGRLIKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++                     + + AL+ LGY        
Sbjct: 121 AER-------------LLLELKGKLGPDIGVAASVANDSQADILQALLALGYS----DKE 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             + LK   +    S+ IRLALRA+
Sbjct: 164 AAAALKALPSDVGVSEGIRLALRAL 188


>gi|299822806|ref|ZP_07054692.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi
           DSM 20601]
 gi|299816335|gb|EFI83573.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi
           DSM 20601]
          Length = 200

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +  ++++++   V Y +       +     G    +FV  H+R+D + L
Sbjct: 1   MYDYINGTVTDITPEFIVVEAGQVGYQL-ITGNPFAFQSMSGQTAKVFVYQHVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++   A  L+ +I  ++   + + P +  K 
Sbjct: 60  FGFKTKEERFLFKKLLSVSGIGPKSALAIIATGDANALIGAIEAEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   LS V         KE+     +      AI AL  LGY + +    
Sbjct: 120 ARQIILDLKGK---LSDVDTSFAKMQRKEEDLTAGLTEALEEAILALEALGYNKKELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   EK        I+LAL+ +
Sbjct: 177 IPKL---EKEDLSSDAYIKLALQLM 198


>gi|226306411|ref|YP_002766371.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4]
 gi|259495653|sp|C0ZZ47|RUVA_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226185528|dbj|BAH33632.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4]
          Length = 199

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    LF    +R+D + L
Sbjct: 1   MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     +  F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  ++++        V           S     + AL  LG+   QA  A
Sbjct: 120 AERMVVELRDKVDAVATTAGAASGAVVG--------SSIRDQIVEALEGLGFPIKQAEQA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SVL +    A  S  +R AL  +
Sbjct: 172 TDSVLAESPE-ATTSVALRSALSLL 195


>gi|260426467|ref|ZP_05780446.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45]
 gi|260420959|gb|EEX14210.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45]
          Length = 221

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G IE   ED+VLIDV+GV YI+YC  R L+ L + G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIEYKGEDHVLIDVRGVGYIVYCSDRVLASLPRPGEAAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++++WF LL +VQGVGA+ ++ +L  +    +  +I L ++  I    GI  K 
Sbjct: 61  YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDANAIKAARGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------------MPSFAINAISAL 167
             R++ ELK KA  + ++    ++    E                          A+SAL
Sbjct: 121 GLRVVNELKDKAPMVMAMGAGTIASAGPEVIDDAPIPSAPAQAQAAPSSAPAQSEALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGY   +A  AV     +    A  +++IR ALR ++
Sbjct: 181 SNLGYAPGEAAAAVAQAAGEAP-TATTAELIRAALRLLA 218


>gi|23335124|ref|ZP_00120362.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Bifidobacterium longum DJO10A]
 gi|23465306|ref|NP_695909.1| holliday junction DNA helicase RuvA [Bifidobacterium longum
           NCC2705]
 gi|189439315|ref|YP_001954396.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium
           longum DJO10A]
 gi|227547258|ref|ZP_03977307.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239621474|ref|ZP_04664505.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|44888506|sp|Q8G6B8|RUVA_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560004|sp|B3DRX9|RUVA_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|23325944|gb|AAN24545.1| probable holliday junction DNA helicase RuvA [Bifidobacterium
           longum NCC2705]
 gi|189427750|gb|ACD97898.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium
           longum DJO10A]
 gi|227212217|gb|EEI80113.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239515935|gb|EEQ55802.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 208

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y +      LS L   G    +F   ++ QD I L
Sbjct: 1   MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRLHA-GQDTRVFTYMNLSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL    ++ F+ L  V G+G +VA  +LS +T ++L  +I   ++  +A+ PG+  K 
Sbjct: 60  HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG     S  + Q      +       + +     +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-----SIDLSQIEGASAQAATSKSPVDTGTEQVVEGLISLGWRQQDAQQA 174

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V     +          D  +++RLAL  +
Sbjct: 175 VAEACAENDIPTPLATDDVPRVLRLALALM 204


>gi|282864188|ref|ZP_06273244.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE]
 gi|282560675|gb|EFB66221.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE]
          Length = 208

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  +  +I+V G+   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALTPNTAVIEVGGIGMALQCTPGTLSGL-RVGQEARLAASLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRIAVATGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +            + + ++        S+     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGEPVG------AHIGQQGIGTAVSSSWRDQLQAALIGLGYATREADEA 173

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      +       Q++R AL++++
Sbjct: 174 VSAVTPQAEAAVADGAQPPVPQLLRAALQSLN 205


>gi|229019645|ref|ZP_04176455.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1273]
 gi|229025883|ref|ZP_04182279.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1272]
 gi|228735435|gb|EEL86034.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1272]
 gi|228741648|gb|EEL91838.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1273]
          Length = 197

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDVESFDQKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|111023845|ref|YP_706817.1| Holliday junction DNA helicase motor protein [Rhodococcus jostii
           RHA1]
 gi|122955049|sp|Q0S1C7|RUVA_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110823375|gb|ABG98659.1| holliday junction DNA helicase [Rhodococcus jostii RHA1]
          Length = 200

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GSEARLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPDALRAALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++       S             S     + ALV LG+   QA  A
Sbjct: 120 AERMVVELRDKVDAVA-------STSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SVL +    +  S  +R AL  +
Sbjct: 173 ADSVLAEAPE-STTSTALRSALSLL 196


>gi|289178595|gb|ADC85841.1| RuvA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 232

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG +E +     ++DV GV + +  P   L+ +  +G    ++    + QD I L
Sbjct: 26  MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 84

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    ++ F+ LQ V GVG +VA+ +LS +   +L ++I   + K +++ PG+  K 
Sbjct: 85  FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 144

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG      S+    +                    +  L++LG+ Q  A  A
Sbjct: 145 AQKIILELKG------SIDVDKIETGEPTSTQRIPTDKGVEQVVEGLMSLGWKQADAQQA 198

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V SV+            +   ++RLAL ++
Sbjct: 199 VDSVISSSGIALPLEEGNVPTVLRLALTSL 228


>gi|213692039|ref|YP_002322625.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254766945|sp|B7GR17|RUVA_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|213523500|gb|ACJ52247.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458151|dbj|BAJ68772.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 208

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y    P   L  L   G    +F   ++ QD + L
Sbjct: 1   MIGMLTGRVESVETDTALIDVGGVGYETRMPATDLGRLHA-GQDACVFTYLNLSQDSVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    ++ F+ L  V G+G +VA  +L  +T ++L  +I   ++  +A+ PG+  K 
Sbjct: 60  YGFLDRDSKRVFLQLIKVSGIGPKVAQSLLGTMTPSQLARAIADNDAAALAKAPGLGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG     S  + Q          +  ++ +     +  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELKG-----SVDLNQSDDASAGNAPYQPTVDAGVEQVVEGLVSLGWRQQDAQRA 174

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V     +          D  +++RLAL  +
Sbjct: 175 VNEACAENDVPMPLASDDAPRVLRLALARM 204


>gi|256545112|ref|ZP_05472478.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC
           51170]
 gi|256399153|gb|EEU12764.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC
           51170]
          Length = 199

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ + ED  +I+   + Y I     T+  L +I +   +F + ++R+D I L
Sbjct: 1   MISYIIGEIKYIGEDNFVIENNNIGYFINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F LL SV  +G + A+ +LS +   ++  +I+  +   + +  GI  K 
Sbjct: 60  FGFSSKDELEVFELLTSVSTIGPKNAIAILSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++  +  D+S  N++  +I S     + A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMA--INDDISISNQDFDNITSNGEIEV-AREALLNLGYQRNSIDKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+   + ++    +II+ +L+ +
Sbjct: 177 LSSLKDSDLSL---EEIIKESLKRM 198


>gi|86139156|ref|ZP_01057726.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193]
 gi|85824000|gb|EAQ44205.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193]
          Length = 229

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV Y++YC  RT+  L  +G+  TL+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRTADHVLIDVRGVGYLVYCSERTMMTLPGVGEPVTLYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFTSLVEKEWHRLLTSVQGVGAKVSLAILGTLGPDGVSRAIALGDWGSVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---------------------SF 159
           A RI+ +LK KA  + ++       +          P                     + 
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGSLPDAIEGADLEAVVEPVEPAAPKKTARKAASKPSGAAAA 180

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +  A+SAL NLGY    A +AV     +  + AD+S +IR ALR ++
Sbjct: 181 SAGALSALGNLGYSPSDAASAVAEAAGENPD-ADESALIRAALRLLA 226


>gi|320011892|gb|ADW06742.1| Holliday junction DNA helicase RuvA [Streptomyces flavogriseus ATCC
           33331]
          Length = 208

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TL+ L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPGTLAGL-RIGTDARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRTAVATGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +            + + ++        S+     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGDPVG------ARIGQQGVGTPVSSSWRDQLQAALIGLGYATREADEA 173

Query: 181 VVSVLKKE------KNIADDSQIIRLALRAIS 206
           V +V  +          A   Q++R AL+ ++
Sbjct: 174 VTAVTPQAEAAIAGGGQAPVPQLLRAALQTLN 205


>gi|227518048|ref|ZP_03948097.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104]
 gi|227074484|gb|EEI12447.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104]
          Length = 223

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLDEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 196

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220


>gi|197106547|ref|YP_002131924.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum
           HLK1]
 gi|229560113|sp|B4R9Z1|RUVA_PHEZH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|196479967|gb|ACG79495.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum
           HLK1]
          Length = 204

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM-RQDQIR 59
           MIG+++G +  + E+  LIDV GV Y++ C  RTLS L  +G+   + VE+    Q  + 
Sbjct: 1   MIGRLRGLVAEVGEEDALIDVMGVGYVVRCGSRTLSRLPAVGEETVIHVESVFGEQTGVT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R+ F+ L+++QGVG + A+ VL  +   EL  ++  ++   +A+  G+  K
Sbjct: 61  LYGFLGRDERRAFVTLRTIQGVGPKAALAVLDVLAPPELAAAVAREDKAAVARANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+ ELK K IS   V          +   +    S A  A++AL+ LG  + QA  
Sbjct: 121 LAQRIVVELKDKPISDGPVAAFHAQATTPQPIKV----SAAGEAVAALMGLGIAEPQARR 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V S   +    A+   +I+ AL+ +
Sbjct: 177 VVESAALRLGEEAEPPALIKAALQEL 202


>gi|315282450|ref|ZP_07870861.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120]
 gi|313613902|gb|EFR87635.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120]
          Length = 201

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++         +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVFTAPGNDIVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L KE ++  D+  I+LAL+ +
Sbjct: 177 IPK-LAKETDLTSDA-YIKLALQLM 199


>gi|90962101|ref|YP_536017.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           UCC118]
 gi|227891123|ref|ZP_04008928.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC
           11741]
 gi|123391344|sp|Q1WT17|RUVA_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90821295|gb|ABD99934.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118]
 gi|227866997|gb|EEJ74418.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC
           11741]
          Length = 201

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G I  +   Y+++DV GV Y +Y                 +FV   +R + I L
Sbjct: 1   MYEYLRGVITEVTPYYIVVDVNGVGYQVYV-ANPFKYEEDEHAEQKVFVYQAVRDNDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++Q F+ L  V G+G + A+ +L+      L+ +I   +   + + PGI  K 
Sbjct: 60  YGFKNSSEKQLFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   LS V    ++  +     + +   +   ++ AL  LGY + +    
Sbjct: 120 AKQIILDLKGK---LSDVDSDMLTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K +    DD   +R  LR +
Sbjct: 177 SKKLEKYDGKSTDD--YLRQGLRLL 199


>gi|296117790|ref|ZP_06836373.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969021|gb|EFG82263.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 211

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 4/209 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+  GV Y      +TL+ L + GD   +     +++D   L
Sbjct: 1   MIASLSGEVLSIALDHAVIECGGVGYQFLATPKTLATLIR-GDHARVMTSMTVKEDARTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D DR  F  LQ+V G+G ++A+  LS + A E+  +I   ++K +  IPG+  ++
Sbjct: 60  YGFTNDEDRAMFHQLQAVSGLGPKLAIACLSVLDAREIAVAISNGDAKKLQTIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           + R+  ELK K  +         S     Q  +       ++  + ALV LG+ +  A  
Sbjct: 120 SERMALELKDKVNNFIGTPDASDSETTATQTGLPVGSGAIVDTVVEALVGLGFTEKAARP 179

Query: 180 AVVS--VLKKEKNIADDSQIIRLALRAIS 206
            V S     K     + + ++R +L A+S
Sbjct: 180 VVESHVAESKTPEKLETATVLRASLSALS 208


>gi|94991379|ref|YP_599479.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS10270]
 gi|123382379|sp|Q1JEH4|RUVA_STRPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94544887|gb|ABF34935.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes
           MGAS10270]
          Length = 198

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +          +  NK      +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYKAKE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  ++    A   Q I+ AL+ +
Sbjct: 173 IRAFFEETSETA--EQYIKSALKLL 195


>gi|229076052|ref|ZP_04209023.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-18]
 gi|229098895|ref|ZP_04229831.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-29]
 gi|229105059|ref|ZP_04235711.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-28]
 gi|229117921|ref|ZP_04247283.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-3]
 gi|228665578|gb|EEL21058.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-3]
 gi|228678369|gb|EEL32594.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-28]
 gi|228684568|gb|EEL38510.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-29]
 gi|228707086|gb|EEL59288.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-18]
          Length = 197

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDVESFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|227555748|ref|ZP_03985795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22]
 gi|229550642|ref|ZP_04439367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           29200]
 gi|307268982|ref|ZP_07550345.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248]
 gi|307274076|ref|ZP_07555285.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855]
 gi|307284121|ref|ZP_07564291.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860]
 gi|307287114|ref|ZP_07567187.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109]
 gi|227175103|gb|EEI56075.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22]
 gi|229304208|gb|EEN70204.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           29200]
 gi|306501893|gb|EFM71183.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109]
 gi|306503492|gb|EFM72741.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860]
 gi|306509201|gb|EFM78262.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855]
 gi|306514651|gb|EFM83203.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248]
 gi|315026742|gb|EFT38674.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2137]
 gi|315033494|gb|EFT45426.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0017]
 gi|315036485|gb|EFT48417.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0027]
 gi|315148995|gb|EFT93011.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4244]
 gi|315151351|gb|EFT95367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0012]
 gi|315165799|gb|EFU09816.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1302]
 gi|315573928|gb|EFU86119.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309B]
 gi|315581880|gb|EFU94071.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309A]
 gi|327533913|gb|AEA92747.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           faecalis OG1RF]
 gi|329576228|gb|EGG57746.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1467]
          Length = 223

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 196

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220


>gi|254424412|ref|ZP_05038130.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335]
 gi|196191901|gb|EDX86865.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335]
          Length = 207

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEG--LYED---YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG +KG +       +      ++  GV Y +    RTLS L ++G+   +F     R+
Sbjct: 1   MIGYVKGILADSQKLPNGRVIATVEAGGVGYDMQVNPRTLSQLPQVGEPVRIFTHLQSRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   LFGF S  +R  F LL SV G+G+++ M +L+ +   EL++S++  N++V+ + PG
Sbjct: 61  DLQMLFGFSSKAERDVFRLLISVSGIGSQMGMSLLNALGLNELIQSVVNGNARVLTRTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI+ ELK K     S                  + +   +    LV LGY   
Sbjct: 121 VGNKTAERIILELKTKLSEWRSHSGIVAPTGGP-------ISAVQEDVEMMLVALGYSNS 173

Query: 176 QATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206
           + + A+V+V          D    IR A+  +S
Sbjct: 174 EISKALVAVGNGTALSKSDDVEDWIREAIAWLS 206


>gi|304383692|ref|ZP_07366151.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           marshii DSM 16973]
 gi|304335216|gb|EFM01487.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           marshii DSM 16973]
          Length = 204

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG +        +I+  GV Y +   + T + + +      L+V   +    R D
Sbjct: 1   MIEYIKGELSEATPALAVIEASGVGYALNISLNTYTSV-QGKKEVKLYVHEVLSAGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R+ + LL SV GVGA  A  +LS +T  EL   I   + +++  + GI
Sbjct: 60  SFTLYGFFTRQERELYRLLISVSGVGANTARMILSAMTTAELCNVISTGDERMLKGVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K +S     +   +  +     + +  +    A+ AL  LG+    
Sbjct: 120 GLKTAQRIIIDLKDKIVSSGIAQELPTTAGH----VVATNSAVKDEAVGALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           ++  VV +LK   ++    Q+++ AL+ I
Sbjct: 176 SSKVVVEILKMHPDLP-VEQVVKQALKMI 203


>gi|332982456|ref|YP_004463897.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1
           BON]
 gi|332700134|gb|AEE97075.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1
           BON]
          Length = 194

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G IE    +YV+IDV G+ + +Y   + L+ +  +     L+V  H+ +  + L
Sbjct: 1   MLAYLDGLIEHKSSNYVIIDVNGIGFKVYATTKILADMPDVKSRTRLYVHWHIGEGNMAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+     F  L SV GVG + A+ ++  ++  +++ +I+  + K +++  GI  K 
Sbjct: 61  FGFASEQQVDMFESLISVSGVGPKGALALMDALSYEQILLAIVQGDEKSLSRAKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      +   D+     E        S    A+ AL++LGY   +A   
Sbjct: 121 AQRIIMELKDKLHMPREIKSSDIGERIDE--------STYGQAVEALISLGYAPAEAARV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    +++    ++I+ ALR 
Sbjct: 173 LEGVTTDGRSL---EEVIKEALRR 193


>gi|299144015|ref|ZP_07037095.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518500|gb|EFI42239.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 198

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L ++Y++I+     YI+Y     +  L +I     ++    +R+D + L
Sbjct: 1   MIDYIKGIISELLDNYIVIENNFKGYIVYMSQSDIEQL-EIMQEVKIYTRLIIREDNMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++   R+ F LL SV  VG + +MG+LS ++A++++ +I+ +NSK +   PGI  K 
Sbjct: 60  YGFVNKDSRKLFDLLTSVTSVGPKASMGILSTLSASQIIVAILDENSKALTSSPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   + D+  +         +      A+ AL++LGY + +A  A
Sbjct: 120 ADRIVLELKDKVSKYNFETRFDVKELKNSLKEEIDISP----AVEALISLGYNKYEAKKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +        D S++I+ AL+ +
Sbjct: 176 LTGI----DENFDVSKMIKEALKRL 196


>gi|332685820|ref|YP_004455594.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC
           35311]
 gi|332369829|dbj|BAK20785.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC
           35311]
          Length = 201

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  +   Y++I+  G+ Y I          GK+     +++   +R+D   L
Sbjct: 1   MFEYIIGTITFINPYYLVIETNGIGYQILVSNPYHYS-GKLEKKVKIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L  V G+G + A+ +L+      L+ +I  +N+  + + PG+  K 
Sbjct: 60  YGFREMEEKQLFLKLIGVSGIGPKSALAILALEDHGGLINAIADENASYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L        +  N+ +            A+ AL  LGY   +    
Sbjct: 120 AQQMVLDLKGKLDELEMTPTAVKAMTNQPK---VKTNQALNEALEALCALGYNDREIKRI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  K  +     Q +  AL+ I
Sbjct: 177 TPDL--KSMDSQSTDQYLSQALKLI 199


>gi|312901232|ref|ZP_07760515.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470]
 gi|311291609|gb|EFQ70165.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470]
          Length = 230

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 86  FGFCSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|56421127|ref|YP_148445.1| Holliday junction DNA helicase RuvA [Geobacillus kaustophilus
           HTA426]
 gi|297529245|ref|YP_003670520.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3]
 gi|81346764|sp|Q5KWQ9|RUVA_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56380969|dbj|BAD76877.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426]
 gi|297252497|gb|ADI25943.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3]
          Length = 194

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    +         T++   ++R+    L
Sbjct: 1   MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK                        +      A++AL  LGY + +    
Sbjct: 120 ARQMILDLKGKL---------GALAAPAAARSAAPLSGALAEAVAALKALGYAEREIEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ ++  +     Q ++ AL  +
Sbjct: 171 IPALREEAMS---TEQYVKRALALL 192


>gi|290581353|ref|YP_003485745.1| putative Holliday junction DNA helicase [Streptococcus mutans
           NN2025]
 gi|254998252|dbj|BAH88853.1| putative Holliday junction DNA helicase [Streptococcus mutans
           NN2025]
          Length = 198

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKGN+  +   Y++++  G+ Y+I       S   +I     +++   +R+D   L
Sbjct: 2   MYDYIKGNLTKITAKYIVLEAGGLGYVINV-ANPYSFSNQINQAIQIYIHHVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV++I   +   + + P I  K 
Sbjct: 61  YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + ++ V        +K +    +       A+ AL+ LGY  ++    
Sbjct: 121 AQQMVLDLAGKFVDINEV------STDKSKVSTINNNQELEEAVEALLALGYKTNE---- 170

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 171 LKKIEKFFEGTTDTAENYIKSALKML 196


>gi|16800636|ref|NP_470904.1| Holliday junction DNA helicase RuvA [Listeria innocua Clip11262]
 gi|20455250|sp|Q92BI1|RUVA_LISIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|16414055|emb|CAC96799.1| ruvA [Listeria innocua Clip11262]
 gi|313618794|gb|EFR90690.1| holliday junction DNA helicase RuvA [Listeria innocua FSL S4-378]
          Length = 201

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG ++ +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIVKTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+    +D    I+LALR +
Sbjct: 177 IPKMAKENDLTSD--AYIKLALRLM 199


>gi|254460781|ref|ZP_05074197.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium
           HTCC2083]
 gi|206677370|gb|EDZ41857.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 222

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+    D+V++DV+GV Y++YC  RTL+ L + G+  +L+ +  +R+D ++L
Sbjct: 1   MIGKLSGRIDYRAADHVMMDVRGVGYMVYCSDRTLAGLPRAGEVVSLYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  +I L +   I    G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALADVTAIKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI--------------CSMPSFAINAISA 166
           A R++ ELK KA  + ++     +    E                      S    A+SA
Sbjct: 121 AQRVVIELKDKAPGVMAMGGGTPATAMGEVPAADDFDVIETSAVKVSVPSASAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGY   +A +AV      +   A  S +IR AL+ ++
Sbjct: 181 LSNLGYAPSEAASAVAEAAGADPE-ATTSALIRAALKLLA 219


>gi|163742241|ref|ZP_02149629.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384571|gb|EDQ08952.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 229

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV YI+YC  RT++ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA----------------- 163
           A RI+ +LK KA  + ++       ++     +         A                 
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTIADAMDGPGLDVVEPAEPVSTAKKPRKAPPKAPSGAAAA 180

Query: 164 ----ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
               +SAL NLGYG   A  AV        + A+++++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPD-ANEAELIRAALRLLA 226


>gi|295112392|emb|CBL31029.1| Holliday junction DNA helicase subunit RuvA [Enterococcus sp. 7L76]
          Length = 218

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 15  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 73

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 74  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 133

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 134 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 191

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 192 ITKQLEALGETTTDV--YLSNALKFM 215


>gi|307276309|ref|ZP_07557435.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134]
 gi|312908743|ref|ZP_07767683.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           512]
 gi|312979206|ref|ZP_07790910.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           516]
 gi|306506974|gb|EFM76118.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134]
 gi|310625342|gb|EFQ08625.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           512]
 gi|311287971|gb|EFQ66527.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           516]
 gi|315171308|gb|EFU15325.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1342]
          Length = 223

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEV--VTTSNQALAEALEALSALGYSDREIKR 196

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220


>gi|296454195|ref|YP_003661338.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JDM301]
 gi|312132689|ref|YP_004000028.1| ruva [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483238|ref|ZP_07942233.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689208|ref|YP_004208942.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691274|ref|YP_004220844.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|291516874|emb|CBK70490.1| Holliday junction DNA helicase subunit RuvA [Bifidobacterium longum
           subsp. longum F8]
 gi|296183626|gb|ADH00508.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JDM301]
 gi|311773647|gb|ADQ03135.1| RuvA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915307|gb|EFV36734.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456130|dbj|BAJ66752.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460544|dbj|BAJ71164.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 208

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y +      LS L   G    +F   ++ QD I L
Sbjct: 1   MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRLHA-GQDTRVFTYMNLSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL    ++ F+ L  V G+G +VA  +LS +T ++L  +I   ++  +A+ PG+  K 
Sbjct: 60  HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG     S  + Q      +       + +     +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-----SIDLSQIEGASAQAAISKSPVDTGTEQVVEGLISLGWRQQDAQQA 174

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V     +          D  +++RLAL  +
Sbjct: 175 VAEACAENDIPTPLATDDVPRVLRLALALM 204


>gi|326329831|ref|ZP_08196151.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium
           Broad-1]
 gi|325952417|gb|EGD44437.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium
           Broad-1]
          Length = 200

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +++V G+   + C   TL+ L + G+   L     +R+D + L
Sbjct: 1   MIASVRGKVAAVSLSTAVVEVGGIGIELLCTPNTLATL-RTGEEAHLPTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F LLQ+  GVG ++A  +L+ ++   +  +I  +++K + ++PGI  K 
Sbjct: 60  FGFTDTDERTLFELLQTASGVGPKLAQAMLAVLSPDGIRLAISTEDAKTLTKVPGIGQKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +               +   A       +      AL+ LGY    A  A
Sbjct: 120 AQRVILELKDRI-------GAPTGSASAPAAVQQGAAPWRDQVTEALIGLGYNARDADKA 172

Query: 181 VVSVLKKEKNIADDS 195
           V ++  +  + A+ S
Sbjct: 173 VTAIEPEAGDHANIS 187


>gi|210635285|ref|ZP_03298481.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279]
 gi|210158446|gb|EEA89417.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279]
          Length = 208

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        +IDV GV + +     T + L ++G    L+    +R+D   L
Sbjct: 1   MISQLHGTVAEATPSMAVIDVNGVGFELGISGTTAAGLPQVGGKVLLYTRMVVREDSCTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L +V GVGA++A+ +L+  +  +L   ++ ++ K +A +PG+  K 
Sbjct: 61  FGFASKDERTMFDKLVAVSGVGAKLALAILTTFSVPQLYAVVMAEDDKGMATVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS--MPSFAINAISALVNLGYGQDQAT 178
           A R++ ELKG      S+    ++        +     P+   +A +AL+++G+   + +
Sbjct: 121 AQRLILELKGAFSKDRSLAGSAVAASIPLPLDVARPVAPNAMDDASAALLSMGFTPAEVS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+      +        ++  AL+ +
Sbjct: 181 LALS---GYDGADMRVEDLLAAALKRL 204


>gi|94496110|ref|ZP_01302688.1| probable holliday junction DNA helicase protein [Sphingomonas sp.
           SKA58]
 gi|94424289|gb|EAT09312.1| probable holliday junction DNA helicase protein [Sphingomonas sp.
           SKA58]
          Length = 202

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K++G ++    D+ +IDV GV Y++    RTL+ LG +G+  T+  E  + +D IRL
Sbjct: 1   MIAKLRGLLDSTGIDHAVIDVGGVGYLVGASSRTLAALGPVGEAVTIHTEMLVAEDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R W+ LL  VQGVG+RVA+ +LS +   EL  ++   +  ++ +  G+  K+
Sbjct: 61  VGFARADERDWYRLLTHVQGVGSRVALAILSALEPAELHRAVATGDKAMVTRANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  +           +    A    + + + +A+SAL NLG+   +A+ A
Sbjct: 121 AQRIVNELKDKIGA-----APAGGPIGVGGAVAMPVGNMSTDALSALQNLGFKPAEASAA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +   +    A    ++RLALR 
Sbjct: 176 VAAAEGELGEGASLDALVRLALRK 199


>gi|99082212|ref|YP_614366.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040]
 gi|99038492|gb|ABF65104.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040]
          Length = 229

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+V+IDV+GV YI+YC  RTL+ L  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKLTGRLDYKTPDHVMIDVRGVGYIVYCSDRTLASLPAVGEAVQLYTELLVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S ++++W  LL SVQGVGA+V++ +LS +    +  +I L +   +    G+  K 
Sbjct: 61  FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI---------------------CSMPSF 159
           A RI+ +LK KA S+ ++       +   +                            + 
Sbjct: 121 AQRIVLDLKDKAPSVMAMGGTVTEALEGPELDAVVEPAAEAPAKPARKAAPKAPTGAAAA 180

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +  A+SAL NLGYG   A  AV        + A ++++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAGAVAEAAANNPD-AGEAELIRAALRLLA 226


>gi|260431115|ref|ZP_05785086.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414943|gb|EEX08202.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 223

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 16/221 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+    D++LIDV+GV YI+YC  RT++ L  +G+  +L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRIDYRAADHLLIDVRGVGYIVYCSDRTMAALPGVGEAVSLYTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFLSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWGAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-------------- 166
           A RI+ +LK KA  + ++       ++   A +      A   + A              
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPVAEVVEPADPAPAPVRAPKPGAGAASAGALS 180

Query: 167 -LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            L NLGYG  +A +AV        + A ++++IR AL+ ++
Sbjct: 181 ALSNLGYGPSEAASAVAEAAANLPD-AGEAELIRAALKLLA 220


>gi|121610984|ref|YP_998791.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae
           EF01-2]
 gi|166231456|sp|A1WQ66|RUVA_VEREI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121555624|gb|ABM59773.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae
           EF01-2]
          Length = 191

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ +   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSSFYNLPAVGERISLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R+A+ +LS ++  +L ++I  Q +  + ++PG+  + 
Sbjct: 61  YGFATAPERQAFRALIKITGVGPRMALSILSGMSVADLAQAIARQEAARLVKVPGVGKRT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +  +     +   +H  ++     + + AL+ LGY   +A  A
Sbjct: 121 AER------------LLLELKGKLGADLGASHGPAVSGAQADILQALLALGYNDKEAAAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  +     + S  I+ AL+A+
Sbjct: 169 LKALPAQ----VEVSDGIKWALKAL 189


>gi|94989443|ref|YP_597544.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS9429]
 gi|94993332|ref|YP_601431.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS2096]
 gi|123080353|sp|Q1JJH3|RUVA_STRPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123382245|sp|Q1J9C4|RUVA_STRPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94542951|gb|ABF33000.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94546840|gb|ABF36887.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes
           MGAS2096]
          Length = 198

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +          +  NK      +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK------AGNTQLDEAIEALLALGYKATE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195


>gi|71904448|ref|YP_281251.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS6180]
 gi|90135995|sp|Q48QW4|RUVA_STRPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71803543|gb|AAX72896.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 198

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +          +  NK      +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK------AGNTQLDEAIEALLALGYKAAE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195


>gi|301301358|ref|ZP_07207500.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300214787|gb|ADJ79203.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           salivarius CECT 5713]
 gi|300851018|gb|EFK78760.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 201

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G I  +   Y+++DV GV Y +Y                 +FV   +R + I L
Sbjct: 1   MYEYLRGVITEVTPYYIVVDVNGVGYQVYV-ANPFKYEEDEHVEQKVFVYQAVRDNDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++Q F+ L  V G+G + A+ +L+      L+ +I   +   + + PGI  K 
Sbjct: 60  YGFKNSSEKQLFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   LS V    ++  +     + +   +   ++ AL  LGY + +    
Sbjct: 120 AKQIILDLKGK---LSDVDSDMLTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K +    DD   +R  LR +
Sbjct: 177 SKKLEKYDGKSTDD--YLRQGLRLL 199


>gi|315143243|gb|EFT87259.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2141]
          Length = 230

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 86  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|15675869|ref|NP_270043.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes M1 GAS]
 gi|21911339|ref|NP_665607.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS315]
 gi|28896713|ref|NP_803063.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes SSI-1]
 gi|71911615|ref|YP_283165.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS5005]
 gi|94995290|ref|YP_603388.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS10750]
 gi|54039576|sp|P66752|RUVA_STRP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042204|sp|P66751|RUVA_STRP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123257497|sp|Q1J492|RUVA_STRPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13623103|gb|AAK34764.1| putative Holiday junction DNA helicase [Streptococcus pyogenes M1
           GAS]
 gi|21905554|gb|AAM80410.1| putative Holiday junction DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811967|dbj|BAC64896.1| putative Holliday junction DNA helicase [Streptococcus pyogenes
           SSI-1]
 gi|71854397|gb|AAZ52420.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94548798|gb|ABF38844.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes
           MGAS10750]
          Length = 198

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +          +  NK      +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYKAKE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195


>gi|311113689|ref|YP_003984911.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia
           dentocariosa ATCC 17931]
 gi|310945183|gb|ADP41477.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia
           dentocariosa ATCC 17931]
          Length = 206

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G++  +  +  ++DV G   ++    RTLS L + G   TL     +R+D + L
Sbjct: 1   MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TATE+  ++   + K   ++PGI  K 
Sbjct: 60  YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    E+       ++    + AL +LG+ +  A  A
Sbjct: 120 ARRIVLELAGKLI---------LSKDQAEENAPAQGIAWKPQVMDALTSLGWSEKDADAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA-ISC 207
           + + ++   +   + + +  ALR  ++ 
Sbjct: 171 IDAYVQHNPDA--EKEAVSAALRGVLAS 196


>gi|257440216|ref|ZP_05615971.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197250|gb|EEU95534.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii
           A2-165]
          Length = 202

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V++   GV Y + CP      L  +G   TL+    + ++ I L
Sbjct: 1   MIYSLSGKIIKKTLNAVVVSCGGVGYYVQCPTSVAGALPGVGREATLYTVMSVAENDISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  +  F LL +V GVG +V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFATEEQQSCFELLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K           ++  +   A        A  AI+ALV+LGY Q +A  A
Sbjct: 121 AQRIVLELKDKVAK---GFVDGINLEDVGAATAAPAAQGAGQAIAALVSLGYSQSEAALA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +           +II+LALR ++
Sbjct: 178 VSKIDASLP----VEEIIKLALRGMA 199


>gi|322374230|ref|ZP_08048762.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150]
 gi|321276834|gb|EFX53907.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150]
          Length = 196

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L        S   K   +  +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAELP-------SETTKTTPNQPAGNHQLDEAMEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +        A   Q I+ AL+ +
Sbjct: 172 VKAFFDGTNETA--EQYIKSALKML 194


>gi|315923964|ref|ZP_07920192.1| crossover junction ATP-dependent DNA helicase RuvA
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622804|gb|EFV02757.1| crossover junction ATP-dependent DNA helicase RuvA
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 231

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              IKG +     D V+I+  G+ Y ++  + T++ L  + +   L +    R+D + L+
Sbjct: 29  FEYIKGELSAQSADTVVIENNGIGYRVHVSLTTIAELPPLHEQLKLLLYPAFREDDVTLY 88

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L S+ G+G + AMG+LS+    EL+  I+  ++K IA+ PGI  K A
Sbjct: 89  GFATAEERGLFGTLISISGIGPKAAMGLLSQFAEPELIRHIVNADAKAIARAPGIGKKTA 148

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI+ ELK +   +  V ++  + V    A + +  +     ++ L+ LGY   +A+  V
Sbjct: 149 ERIILELKDRYKDV--VAEEGDAPVGGATAKLRAADNLTNEGVNGLLGLGYTYAEASDLV 206

Query: 182 VSVLKKEKNIAD 193
              L  +  I +
Sbjct: 207 ARALAPDMTIEE 218


>gi|184154991|ref|YP_001843331.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO
           3956]
 gi|227514529|ref|ZP_03944578.1| crossover junction endoribonuclease subunit A [Lactobacillus
           fermentum ATCC 14931]
 gi|260663386|ref|ZP_05864277.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum
           28-3-CHN]
 gi|229560093|sp|B2GB19|RUVA_LACF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183226335|dbj|BAG26851.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO
           3956]
 gi|227087086|gb|EEI22398.1| crossover junction endoribonuclease subunit A [Lactobacillus
           fermentum ATCC 14931]
 gi|260552238|gb|EEX25290.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum
           28-3-CHN]
          Length = 200

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +  D++++DV GV Y +       +          +F+   +++D I L
Sbjct: 1   MFEYLTGLITMVSPDFIVVDVNGVGYRVAV-ANPYAYQEDDQQAVQVFIYQAVKEDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G + A+ +L+      L+++I   + K +++ PGI  K 
Sbjct: 60  FGFATQAEKRLFTQLIGVSGIGPKSALAILATPDHQGLIDAIQNGDDKYLSKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K +++   VQ D +             + A        +LGY   Q    
Sbjct: 120 ASRIIIELKDKVVAVQDEVQLDFTAPGPLGPSAALQDALAAL-----ESLGYTTKQVER- 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L+  +     +  +   L+ +S
Sbjct: 174 VQKQLEGLQGELSTNDYLSQGLKLLS 199


>gi|229547070|ref|ZP_04435795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322]
 gi|312952497|ref|ZP_07771365.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102]
 gi|229307799|gb|EEN73786.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322]
 gi|310629593|gb|EFQ12876.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102]
 gi|315153490|gb|EFT97506.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0031]
 gi|315155061|gb|EFT99077.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0043]
 gi|315158504|gb|EFU02521.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0312]
          Length = 223

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTVTEV--VTTSNQALAEALEALSALGYSDREIKR 196

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220


>gi|19746986|ref|NP_608122.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS8232]
 gi|24212371|sp|Q8NZ27|RUVA_STRP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|19749241|gb|AAL98621.1| putative Holliday junction DNA helicase [Streptococcus pyogenes
           MGAS8232]
          Length = 198

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTKDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +          +  NK      +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK------AGNTQLDEAIEALLALGYKATE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195


>gi|223933912|ref|ZP_03625874.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591]
 gi|302023155|ref|ZP_07248366.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05HAS68]
 gi|330831910|ref|YP_004400735.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3]
 gi|223897414|gb|EEF63813.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591]
 gi|329306133|gb|AEB80549.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3]
          Length = 196

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++ QGV YI+       +  G++    T++    +R+D   L
Sbjct: 1   MYDYIKGILTKITAKYIVVETQGVGYILQV-ANPYAYSGQVQQEVTVYTHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV +I  +N   + + P I  K 
Sbjct: 60  YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +               +Q    S       A+ A+  LGY   +    
Sbjct: 120 AQQMILDLEGKFVMSEEAGPV-------QQVAPSSENIALDEAMEAMEALGYRPAE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +   + A     I+ AL+ +
Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194


>gi|145220343|ref|YP_001131052.1| Holliday junction DNA helicase RuvA [Prosthecochloris vibrioformis
           DSM 265]
 gi|189045761|sp|A4SGE1|RUVA_PROVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145206507|gb|ABP37550.1| Holliday junction DNA helicase subunit RuvA [Chlorobium
           phaeovibrioides DSM 265]
          Length = 200

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     +  +++V G+ Y       T   L ++G    L+    +R+D ++L
Sbjct: 1   MYAYFRGRLVSCLPEEAVLEVSGIAYRFLVSAGTARQLPEVGTETILYTHLSVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F LL    GVG ++A+ VLS +   E+ E+I+    + +  I G+  K 
Sbjct: 61  YGFATEEEKQLFRLLLLTSGVGPKLALAVLSGMAVPEVHEAILANAPERLFGITGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + L+ V     S              F  +A++AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDKILKLAPVGSAVASVAADRGG-------FREDAVNALMTLGFPRPVANQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+ E + A    +I+ AL  +
Sbjct: 174 VGCALEPEPD-ASLEVVIKRALATM 197


>gi|289434813|ref|YP_003464685.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171057|emb|CBH27599.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 201

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTITTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ V   ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYSTRELKKI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+    +D    I+LALR +
Sbjct: 177 IPKLAKEVDLTSD--AYIKLALRLM 199


>gi|118467715|ref|YP_887263.1| Holliday junction DNA helicase RuvA [Mycobacterium smegmatis str.
           MC2 155]
 gi|166230568|sp|A0QWH5|RUVA_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118169002|gb|ABK69898.1| holliday junction DNA helicase RuvA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 195

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+    R  F+ L  V GVG ++A+  L+      L +++   +   + ++PGI  + 
Sbjct: 60  YGFVDGDARDLFLTLLGVSGVGPKIALATLAVYDPQALRQALADGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K              V+          +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKI-----------GPVSAGGGAAVGGHAIRGPVVEALVGLGFAAKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  +      S + R AL  +
Sbjct: 169 TDKVLANDPEATTSSAL-RAALSML 192


>gi|254976401|ref|ZP_05272873.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-66c26]
 gi|255093787|ref|ZP_05323265.1| Holliday junction DNA helicase RuvA [Clostridium difficile CIP
           107932]
 gi|255315538|ref|ZP_05357121.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-76w55]
 gi|255518201|ref|ZP_05385877.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-97b34]
 gi|255651317|ref|ZP_05398219.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-37x79]
 gi|260684381|ref|YP_003215666.1| Holliday junction DNA helicase RuvA [Clostridium difficile CD196]
 gi|260688040|ref|YP_003219174.1| Holliday junction DNA helicase RuvA [Clostridium difficile R20291]
 gi|306521149|ref|ZP_07407496.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-32g58]
 gi|260210544|emb|CBA65075.1| holliday junction DNA helicase [Clostridium difficile CD196]
 gi|260214057|emb|CBE06222.1| holliday junction DNA helicase [Clostridium difficile R20291]
          Length = 200

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  ++ +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFVSREELKMFELLTSVSKIGPKVALSILSFASSAQLGAYILSEDIGKLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   +  +                   ++ ALV LGY   ++  A
Sbjct: 120 AERIVLELKDKVDKNNIEFEPTL-------LSQKPTLISQDESVDALVALGYTLSESKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K   N      II+ AL
Sbjct: 173 VQKCKKDGMN---TEAIIKKAL 191


>gi|255327194|ref|ZP_05368269.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC
           25296]
 gi|255295812|gb|EET75154.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC
           25296]
          Length = 206

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+V G   ++Y   RTLS L + G+  T+     +R++ + L
Sbjct: 1   MIASLTGRVAQVGLDHAVINVNGFGMLVYATARTLSKL-RTGEEATVLTTMIVREESMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TA E+  ++   + K   ++PGI  K 
Sbjct: 60  YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    ++  +     +    + AL +LG+ +  A+ A
Sbjct: 120 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA-ISC 207
           + + ++       +   +  ALR  ++ 
Sbjct: 171 IDAYVQHNPAAETEPVGV--ALRGVLAS 196


>gi|183601646|ref|ZP_02963016.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683820|ref|YP_002470203.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241190856|ref|YP_002968250.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196262|ref|YP_002969817.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|254766944|sp|B8DUE8|RUVA_BIFA0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183219252|gb|EDT89893.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621470|gb|ACL29627.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249248|gb|ACS46188.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250816|gb|ACS47755.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793845|gb|ADG33380.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 207

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG +E +     ++DV GV + +  P   L+ +  +G    ++    + QD I L
Sbjct: 1   MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    ++ F+ LQ V GVG +VA+ +LS +   +L ++I   + K +++ PG+  K 
Sbjct: 60  FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG      S+    +                    +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG------SIDVDKIETGEPTSTQRIPTDKGVEQVVEGLMSLGWKQADAQQA 173

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V SV+            +   ++RLAL ++
Sbjct: 174 VDSVISSSGIALPLEEGNVPTVLRLALTSL 203


>gi|313623659|gb|EFR93815.1| holliday junction DNA helicase RuvA [Listeria innocua FSL J1-023]
          Length = 201

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG ++ +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIVKTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+    +D    I+LAL+ +
Sbjct: 177 IPKMAKENDLTSD--AYIKLALQLM 199


>gi|169629967|ref|YP_001703616.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus ATCC
           19977]
 gi|229560105|sp|B1MCJ1|RUVA_MYCA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169241934|emb|CAM62962.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus]
          Length = 202

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+V+I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1   MIASVNGEVIDIALDHVVIEAAGVGYRVNATPATLSTL-RRGTQIRLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFTDTDARDLFTTLLGVSGVGPKIAMATLAVYDAPTLRQALADGDVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +         +     +    +        + AL+ LG+   QA  A
Sbjct: 120 AERLVLELREKVAA---------APGGTTELGRGTASLVRSQVVEALIGLGFAAKQAEQA 170

Query: 181 VVSVLKKEKN---IADDSQIIRLALRAI 205
             +VL ++      AD S ++R AL  +
Sbjct: 171 TDTVLAQDNPGDTGADVSGVLRSALALL 198


>gi|260903852|ref|ZP_05912174.1| Holliday junction DNA helicase, RuvA subunit [Brevibacterium linens
           BL2]
          Length = 206

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  +  D+++I   GV   +     TLS   + G    L     +R+D + LF
Sbjct: 10  ISFLSGTVHRIAADHLVILTYGVGRRVNVTPDTLSN-TRHGADIELVTTLVVREDSMTLF 68

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF ++ +   F +L S+ G+G R+AM +LS +   EL  +I  Q++  + ++PGI  K A
Sbjct: 69  GFGTEDENHTFEVLLSISGIGPRLAMAILSVMGPGELAAAISNQDANALTRVPGIGKKGA 128

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           SRI+ EL+ K   LS+           E     S        + ALV LG+ + QA   V
Sbjct: 129 SRIILELENKLPKLSA----------SEPGPQLSFGGANQQVVDALVGLGWKEAQAADVV 178

Query: 182 VSVLKKEKNIADDSQIIRLALRAISC 207
             V+      A  S +++ +L+ +  
Sbjct: 179 QEVVNDLGQNAGTSALLKASLKVLGA 204


>gi|15604250|ref|NP_220766.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii str.
           Madrid E]
 gi|6226115|sp|Q9ZDE6|RUVA_RICPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3860942|emb|CAA14842.1| HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) [Rickettsia prowazekii]
 gi|292571994|gb|ADE29909.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii Rp22]
          Length = 199

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 122/203 (60%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DYV+IDV GV Y++Y   +TL+ L + G F  LF+ETH+R++ I L
Sbjct: 1   MIGKLNGKIDSHCDDYVIIDVNGVGYLVYASGKTLAKLVE-GKFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G ++A+ +LS +T T++  +I   +  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIQIAINNDDRNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM ELK K   + S      S    + ++I S+       + ALVNLG+ + +A   
Sbjct: 120 AERIMLELKDKITKIFS------SSAIIKDSNISSI--AINEVMKALVNLGFTRFEAQNT 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 172 VQGIITQNPKISID-ELIKTALK 193


>gi|312903815|ref|ZP_07762987.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635]
 gi|310632759|gb|EFQ16042.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635]
 gi|315160794|gb|EFU04811.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0645]
 gi|315168284|gb|EFU12301.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1341]
 gi|315579775|gb|EFU91966.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0630]
          Length = 230

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 86  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEV--VTTSNQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|306826474|ref|ZP_07459785.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           pyogenes ATCC 10782]
 gi|304431333|gb|EFM34331.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           pyogenes ATCC 10782]
          Length = 198

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +          +  NK      +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK------AGNTQLDEAIEALLALGYKATE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195


>gi|146317720|ref|YP_001197432.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05ZYH33]
 gi|146319910|ref|YP_001199621.1| Holliday junction DNA helicase RuvA [Streptococcus suis 98HAH33]
 gi|253750976|ref|YP_003024117.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84]
 gi|253752876|ref|YP_003026016.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7]
 gi|253754701|ref|YP_003027841.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407]
 gi|166231447|sp|A4VYN2|RUVA_STRS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166231449|sp|A4VSE3|RUVA_STRSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145688526|gb|ABP89032.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           suis 05ZYH33]
 gi|145690716|gb|ABP91221.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           suis 98HAH33]
 gi|251815265|emb|CAZ50830.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84]
 gi|251817165|emb|CAZ54886.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407]
 gi|251819121|emb|CAR44199.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7]
 gi|292557520|gb|ADE30521.1| Holliday junction DNA helicase RuvA [Streptococcus suis GZ1]
 gi|319757228|gb|ADV69170.1| Holliday junction DNA helicase RuvA [Streptococcus suis JS14]
          Length = 196

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++ QGV YI+       +  G++    T++    +R+D   L
Sbjct: 1   MYDYIKGILTKITAKYIVVETQGVGYILQV-ANPYAYSGQVQQEVTVYTHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV +I  +N   + + P I  K 
Sbjct: 60  YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +               +Q    S       A+ A+  LGY   +    
Sbjct: 120 AQQMILDLEGKFVMSEEAGPV-------QQVAPSSENIALEEAMEAMEALGYRPAE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +   + A     I+ AL+ +
Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194


>gi|159043653|ref|YP_001532447.1| Holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12]
 gi|189045752|sp|A8LHP9|RUVA_DINSH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157911413|gb|ABV92846.1| holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12]
          Length = 224

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 19/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +     D++++DV+GV Y++ C  RTL+ +   G    LF E  +R+D ++L
Sbjct: 1   MIGRLSGVLVYRGRDHIVLDVRGVGYVVQCSERTLAGMPAPGGPVALFTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+++W  LL SVQGVGA+ +M +LS +    +  +I L +   + +  G+  KI
Sbjct: 61  YGFPTLLEKEWHRLLTSVQGVGAKASMSILSTLGVDGVGRAIALGDWGALRKAQGVGPKI 120

Query: 121 ASRIMTELKGKAI-----------SLSSVVQQDMSC---VNKEQAHICSMPSFAIN---A 163
           A R++ ELK K             +L  V++  M+    +    A   ++PS A +   A
Sbjct: 121 AQRVVNELKDKGPEVMAMGGTLEAALDGVIEDGMAASEGIEPPSAARPAVPSAASDQAGA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SALVNLGYGQ +A +         +    ++ IIR ALR ++
Sbjct: 181 LSALVNLGYGQGEAAS--AVATAAGEGAVGETDIIRAALRLLA 221


>gi|209560229|ref|YP_002286701.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes NZ131]
 gi|226698743|sp|B5XJ07|RUVA_STRPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209541430|gb|ACI62006.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes NZ131]
          Length = 198

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTHSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +          +  NK      +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYTATE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195


>gi|256855044|ref|ZP_05560405.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8]
 gi|307291531|ref|ZP_07571408.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411]
 gi|256709557|gb|EEU24604.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8]
 gi|306497396|gb|EFM66936.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411]
 gi|315028754|gb|EFT40686.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4000]
          Length = 230

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 86  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--LTTSNQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|317500339|ref|ZP_07958564.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898280|gb|EFV20326.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 184

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 6/186 (3%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            G+ Y ++ P + L+ L  +G+   L+   ++R+D ++LFGFL+  D + F L+  V G+
Sbjct: 2   GGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQLFGFLTKDDLEIFRLVIGVSGI 61

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141
           G +  + +LS ++  EL  +I+  ++K+I+  PGI  K A +++ EL+ K   +  ++  
Sbjct: 62  GPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKTAEKLIVELRDKV-DIEKMLDH 120

Query: 142 DMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIR 199
                   Q  +   S       A+ ALV LGYG  ++  AV    K          I++
Sbjct: 121 AAHPEETIQTDMAKTSANEMQSEAVQALVALGYGSAESLRAVK---KTSVQCQTVEDILK 177

Query: 200 LALRAI 205
            AL+ +
Sbjct: 178 EALQYL 183


>gi|81427980|ref|YP_394979.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp.
           sakei 23K]
 gi|90135183|sp|Q38YR0|RUVA_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78609621|emb|CAI54667.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 203

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 9/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV+++VQG+ Y +            + +   +FV   +R   I L
Sbjct: 1   MYEYLKGLVTAVNPYYVVLEVQGIGYQLQV-ANPYRYTESMSEVVQIFVHQAVRDTDITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++Q F  L SV G+G + A+ +L+    + L+++I+  +   + + PG+  K 
Sbjct: 60  FGFYDLDEKQLFQKLISVSGIGPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +LKGK   L       +                  +A++AL  LGY   +    
Sbjct: 120 AQQIALDLKGKLGDLEQ--SATLVGQTAIDLGSQGDSPELSDALAALSALGYSARE---- 173

Query: 181 VVSVLKKEKNIA--DDSQIIRLALRAI 205
           V ++  K  + A     Q +R  LR +
Sbjct: 174 VKAITPKLTDFAAQTTDQYLREGLRLL 200


>gi|68536132|ref|YP_250837.1| holliday junction DNA helicase [Corynebacterium jeikeium K411]
 gi|90134845|sp|Q4JVD8|RUVA_CORJK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68263731|emb|CAI37219.1| holliday junction DNA helicase [Corynebacterium jeikeium K411]
          Length = 211

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DYV I+  GV Y       T++ L + G+   +     +R+D   L
Sbjct: 1   MIASLRGTVIDKGLDYVTIECAGVGYQCSGTATTIAELPR-GEEVFVTTALVVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +++ F  LQSV GVGAR+A+ +LS IT  EL  ++   + K + + PG+  ++
Sbjct: 60  YVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQRAPGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R+  +LKGK   L  +                      P      + ALV LG+ + +
Sbjct: 120 AERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGFTESK 179

Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAI 205
           A T + +VL +       D S ++R +L AI
Sbjct: 180 AGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210


>gi|323143601|ref|ZP_08078278.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT
           12066]
 gi|322416664|gb|EFY07321.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT
           12066]
          Length = 207

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M G ++G +  +    VLI+V GV Y +  P+ +L+ +  + +   ++V   +R+D   L
Sbjct: 1   MFGSLRGKVLRIDGVTVLIEVGGVGYEVEMPVTSLAKI-SVNEEEFIYVHHVVREDDELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    DR  F  L  V GVG ++A+ VLS   A + + ++    +  + Q+PG+  K 
Sbjct: 60  YGFCDLSDRTLFRELIKVNGVGPKLALAVLSSFNAHDFIAAVTSGRTGALTQVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179
           A R+M ELK +   L        + ++K       + + A   A+SAL+ LGY +  A  
Sbjct: 120 AERLMVELKDRLDKLPLSDTVSTADLSKVNGMAAVVGNIAVDEAVSALIGLGYKEALAFE 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            V SV K+     D  QII  AL  IS
Sbjct: 180 YVNSVAKEGM---DTKQIIVAALGLIS 203


>gi|50915147|ref|YP_061119.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS10394]
 gi|139474559|ref|YP_001129275.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str.
           Manfredo]
 gi|68053071|sp|Q5X9H7|RUVA_STRP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166231446|sp|A2RGV1|RUVA_STRPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|50904221|gb|AAT87936.1| Holliday junction DNA helicase [Streptococcus pyogenes MGAS10394]
 gi|134272806|emb|CAM31083.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str.
           Manfredo]
          Length = 198

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +          +  NK      +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYKATE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195


>gi|239907719|ref|YP_002954460.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1]
 gi|259495640|sp|C4XIJ9|RUVA_DESMR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239797585|dbj|BAH76574.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1]
          Length = 202

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +    + + ++    GV Y +  P    + L   G   +LFV T +R+D + 
Sbjct: 1   MIGYLEGRVVARRDRFAIVLTPGGVGYELELPTPVAAALPAPGGQVSLFVHTVVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  DR+ F  L  +  +G R A+ +LS  TA +L+  +   +++ + ++PGI  K
Sbjct: 61  LFGFASLDDRETFRTLIGISKLGPRTALAILSHFTADDLLRVVASGDAEALVRVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI  EL  K         +  +        +      A + ++ L NLGY + +A  
Sbjct: 121 SAQRIFIELSYKL--------EGRAPAAGLAPSVPIPGGVAGDVVAGLTNLGYPEPEARQ 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
               VL+ E ++ D +  +R AL+ ++ 
Sbjct: 173 VAAEVLEAEPDL-DVAAALRQALKRLAS 199


>gi|313633143|gb|EFS00032.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL N1-067]
 gi|313637717|gb|EFS03086.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL S4-171]
          Length = 201

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIITTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ V   ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYSTRELKKI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+    +D    I+LALR +
Sbjct: 177 IPKLAKEADLTSD--AYIKLALRLM 199


>gi|315174120|gb|EFU18137.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1346]
          Length = 230

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 86  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEV--MTTSNQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|108799233|ref|YP_639430.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. MCS]
 gi|119868349|ref|YP_938301.1| Holliday junction DNA helicase motor protein [Mycobacterium sp.
           KMS]
 gi|126434891|ref|YP_001070582.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS]
 gi|123369347|sp|Q1B9R0|RUVA_MYCSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230569|sp|A3PYW4|RUVA_MYCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230570|sp|A1UFA3|RUVA_MYCSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|108769652|gb|ABG08374.1| Holliday junction DNA helicase subunit RuvA [Mycobacterium sp. MCS]
 gi|119694438|gb|ABL91511.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. KMS]
 gi|126234691|gb|ABN98091.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS]
          Length = 196

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTESRLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++A+  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFADADARDLFGTLLGVSGVGPKIALATLAVYDAPTLRQALADGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   +++      + V     H    P      + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKIGPVTT-----GAGVTAVGGHAVRGP-----VVEALVGLGFAAKQAEEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  + +    S + R AL  +
Sbjct: 170 CDKVLAADPDATTSSAL-RAALSML 193


>gi|312863970|ref|ZP_07724207.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis
           F0396]
 gi|311100536|gb|EFQ58742.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis
           F0396]
          Length = 196

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YII       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L +   +      +    +         A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAELPTETTKTTPSQPEGNHQL-------DEAMEALLALGYKAAEIKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +  +     A   Q I+ AL+ +
Sbjct: 172 VKAFFEGTNETA--EQYIKSALKML 194


>gi|259046890|ref|ZP_05737291.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC
           49175]
 gi|259036513|gb|EEW37768.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC
           49175]
          Length = 195

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++IDV GV Y +            +     + V+  +R+D I L
Sbjct: 1   MYEYLNGELAHILPTAIVIDVHGVGYQV-VFANPYRLQDSLKKQIKVLVQQVVREDSITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R+ F  L SV G+G + AM +L+       V ++   N   + + PG+  K 
Sbjct: 60  YGFISSEERELFQRLISVSGIGPKSAMSILANDDTEGFVNAVESGNVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK  +L     + +   N+         +    A  AL+ LGY   +    
Sbjct: 120 AQQIILDLKGKFEALPEETTKAVVSTNQ---------ATLEEAKEALLGLGYSAKEIKKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+     +     + +++A + +
Sbjct: 171 WKSLEAAAPS--TTQEALKVAFKLL 193


>gi|327439540|dbj|BAK15905.1| holliday junction resolvasome, DNA-binding subunit [Solibacillus
           silvestris StLB046]
          Length = 251

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 3/201 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +  +Y++++ QG+ +++Y P               ++V   +R+D   L
Sbjct: 46  MYDYLKGQVTRVTPEYIVLEQQGIGWMLYTPNPFAFRTSA--SEQQIYVSLQVREDAQNL 103

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   R+ F  L  V G+G + A+ +L+    T ++++I +++   + + PG+  K 
Sbjct: 104 YGFNSLEQRELFKKLIQVSGIGPKGALAILASGNPTSVIQAIEMEDEAFLIRFPGVGKKT 163

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L   V+   +        +         A+ ALV LGY + +    
Sbjct: 164 ARQMILDLKGKLDMLLDHVELPSAENELPLFGVNPNEHELQEAMLALVALGYSEKELDK- 222

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
           +   L ++  +      I+ A
Sbjct: 223 IRPQLSEDDKLTTTDAYIKQA 243


>gi|260578827|ref|ZP_05846734.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC
           43734]
 gi|258603125|gb|EEW16395.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC
           43734]
          Length = 211

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DYV I+  GV Y       T++ L + G+   +     +R+D   L
Sbjct: 1   MIASLRGTVIDKGLDYVTIECAGVGYQCSGTATTIAELPR-GEEVFVTTALVVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +++ F  LQSV GVGAR+A+ +LS IT  EL  ++   + K + + PG+  ++
Sbjct: 60  YVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQKAPGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R+  +LKGK   L  +                      P      + ALV LG+ + +
Sbjct: 120 AERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGFTESK 179

Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAI 205
           A T + +VL +       D S ++R +L AI
Sbjct: 180 AGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210


>gi|50842639|ref|YP_055866.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           KPA171202]
 gi|282853888|ref|ZP_06263225.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139]
 gi|81611698|sp|Q6A8K8|RUVA_PROAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|50840241|gb|AAT82908.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           KPA171202]
 gi|282583341|gb|EFB88721.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139]
          Length = 201

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G +      +V++D  GV   + CP  T +   +I    +L     +R++ + L
Sbjct: 1   MISHFSGTVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K 
Sbjct: 60  YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ ELK K  +L+          +           +       LV LG+    A  A
Sbjct: 120 AAKMILELKDKVAALAPRGASASGATH-------VAAPWREQVAEGLVGLGWSTKDAEKA 172

Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206
           V  V  LK+         ++R ALR+++
Sbjct: 173 VDKVVALKEADPAMSIGNLMRAALRSLA 200


>gi|57234748|ref|YP_181186.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes
           195]
 gi|90134862|sp|Q3Z9B3|RUVA_DEHE1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57225196|gb|AAW40253.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes
           195]
          Length = 194

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 14/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  Y P  + + +G++G    +F   H+R+D + L
Sbjct: 1   MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPG+  K 
Sbjct: 61  FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K               + E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 ASRIVLELKDKITK------------SWEAGVLIQVTEANSDILATLTALGYSAGEAAKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           + S+  ++       + I+LAL
Sbjct: 169 IASL--EDITGMPLEERIKLAL 188


>gi|210622015|ref|ZP_03292958.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275]
 gi|210154460|gb|EEA85466.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275]
          Length = 200

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG IE +  D + ID   + Y I     T +   ++G+   +F +  +R+D++ L
Sbjct: 1   MYRYIKGTIEEIGFDSITIDNNDIGYSILVSSNTAAQY-QVGEKAKVFTKLIVREDEMFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S+ +R  F +L S+  +G +V + +LS  T  +L   I+ ++   I++ PG+  K 
Sbjct: 60  CGFHSEEERNMFDMLTSISKIGPKVGLSILSFATPKQLGAYILSEDIAKISKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        +  +         I         ++ AL+ LGY Q +A  A
Sbjct: 120 AERIILELKDKIDKTQIEFEPTLLEAQPAAISI-------DESVDALIALGYTQAEAKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    K +K   +  +IIR +L  +
Sbjct: 173 VK---KTKKPGMETEEIIRKSLTYL 194


>gi|254464647|ref|ZP_05078058.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I]
 gi|206685555|gb|EDZ46037.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I]
          Length = 229

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +D+VLIDV+GV YI+YC  RT++ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRAQDHVLIDVRGVGYIVYCSDRTMAALPGTGEPVALYTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWATVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL---------- 167
           A RI+ +LK KA    ++   V   M     E          A  A  AL          
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVVDAMDGPGLELVEAADPAPAAKPARKALPKKPSGAAAA 180

Query: 168 --------VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                    NLGYG   A  AV        + AD+ ++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATWPD-ADEPELIRAALRLLA 226


>gi|270307810|ref|YP_003329868.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
 gi|270153702|gb|ACZ61540.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
          Length = 194

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 14/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  Y P  + + +G++G    +F   H+R+D + L
Sbjct: 1   MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPGI  K 
Sbjct: 61  FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K               + E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 ASRIVLELKDKIAK------------SWEAGVLSQVTEANSDILATLTALGYSAGEAAKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           + S+  ++       + I+LAL
Sbjct: 169 IASL--EDITGLPLEERIKLAL 188


>gi|317128202|ref|YP_004094484.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM
           2522]
 gi|315473150|gb|ADU29753.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM
           2522]
          Length = 204

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  + V ++V  V Y+++C          I +  T++   H+R+D I+L
Sbjct: 1   MIESLTGVVSNIEIESVTLNVHDVGYLVFC-ANPFRYEENINEKVTIYTYQHVREDAIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  V G+G + A+ +L+    T +V++I  +N K + + PG+  K 
Sbjct: 60  YGFKNRDERKLFEKLLQVSGIGPKGALAILATGEPTLVVQAIEAENEKFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK +        + + +      +         A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGKLVDFLQESGGEDTKLIAIDDDMQLENYELEEALEALKALGYVDREINKV 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LK  K   D    I++AL+ +
Sbjct: 180 LPK-LKDTKETTDG--YIKIALKLM 201


>gi|218264168|ref|ZP_03478052.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222214|gb|EEC94864.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii
           DSM 18315]
          Length = 197

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T +      D   ++V   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPARMVLECAGIGYELNISLNTYTFYNGKADG-KVYVYEIIREDAHVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F++L +V GVG   A  +LS ++ +ELV +I  ++   +  + GI  K 
Sbjct: 60  FGFAGIEERELFLMLTTVPGVGPNTARMILSSLSPSELVRAIADKDENSLVAVKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  ++  +              +      A      LV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKAVEGLTTVSTPKTPASNNAVAEEAVAA------LVMLGFQKAASQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK   ++A   Q+I+ ALR +
Sbjct: 174 VHTILKGSPSLA-VEQVIKTALRML 197


>gi|315651980|ref|ZP_07904982.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium
           saburreum DSM 3986]
 gi|315485809|gb|EFU76189.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium
           saburreum DSM 3986]
          Length = 194

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +     + V ++  G+ Y I+   R +  L K G    +     + +D   L
Sbjct: 1   MIAYIRGIVTEKNVNTVTVECSGIGYEIFATGRDIDKLSK-GSEVLIHTYLKISEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  V GVG + A+ +++ + + +L  +I+ ++ K I    G+  KI
Sbjct: 60  YGFLNKDDMVMFKKLIIVNGVGPKAALSIMNTLNSFDLKIAIVTEDYKAICAAVGVGSKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK K              +   +A   S  S    A+ ALV+LGY   +A  A
Sbjct: 120 AKKIILELKEKVKP---------DDIGTLEAADTSDNSVVSEALEALVSLGYSNSEAYKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  + KN      I++LAL+ +
Sbjct: 171 IKEI--EVKNTDTTEDILKLALKKM 193


>gi|56808549|ref|ZP_00366283.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Streptococcus pyogenes M49 591]
          Length = 198

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +          +  NK      +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYTATE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195


>gi|329848091|ref|ZP_08263119.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum
           C19]
 gi|328843154|gb|EGF92723.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum
           C19]
          Length = 201

 Score =  204 bits (519), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +  + ++  +++  GV YI+ C IRTL+ + K      L +++  R+D  RL
Sbjct: 1   MIGRLRGPLLEVGDEDAVVEAGGVGYIVRCGIRTLAAMPKPDTEVILHIDSQTREDGTRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +RQ F  L  VQGVG + A+ VL  ++  +L +++   +   + +  G+  K+
Sbjct: 61  YGFLNKDERQAFQALLGVQGVGPKAALAVLDVLSPGQLAQAVAQDDKASVGRANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGKA++ ++     +      +A +         +++AL+ LG  + QA  A
Sbjct: 121 ALRIVVELKGKALTSATFEPIALKPAEPVKASVNG------ESVAALIGLGISETQARLA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V + ++     A    +IR AL+ +
Sbjct: 175 VEAAIQTLGADAALPAVIRTALKNL 199


>gi|291301298|ref|YP_003512576.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM
           44728]
 gi|290570518|gb|ADD43483.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM
           44728]
          Length = 200

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +      I V GV   +     TL+ L ++G   TL+    +R+D + L
Sbjct: 1   MIASLTGTVTHVSTSTATITVGGVGMSVRATPGTLANL-RVGGESTLYTTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F LLQ+  GVG R+A   L+      +  +I   ++  + +IPG+  K 
Sbjct: 60  YGFEAPDERDLFELLQTASGVGPRLAQAALAVHPPATVRHAIASGDTATLTRIPGVGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  +L   +  +               S+       L++LG+    A  A
Sbjct: 120 AERLVLELKDKIGALPGSMATEPKAGRPV--------SWRDQVQQGLMSLGWSAKDANGA 171

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207
           +  +  + +    D   +++ A+R +  
Sbjct: 172 ITKLDSQVDGEAVDIQGLLKQAIRLLGT 199


>gi|126732347|ref|ZP_01748147.1| Holliday junction DNA helicase motor protein [Sagittula stellata
           E-37]
 gi|126707216|gb|EBA06282.1| Holliday junction DNA helicase motor protein [Sagittula stellata
           E-37]
          Length = 222

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 121/220 (55%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I    ED+VLIDV+GV Y++YC  R L+ LG+ G+F  L+ +  +R+D ++L
Sbjct: 1   MIGRIAGQIVYRGEDHVLIDVRGVGYVVYCTDRVLASLGRPGEFAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++WF LL SVQGVGA+ ++ +L  + A  +  ++ L +   +    GI  K 
Sbjct: 61  FGFPTLVEKEWFRLLMSVQGVGAKASLAILGALGADGVSRALALGDWNAVKAAKGIGPKT 120

Query: 121 ASRIMTELKGKAI-----SLSSVVQQDMSCVNKEQAHI---------CSMPSFAINAISA 166
           A R++ ELK KA       + +     +S    E               + S    A+SA
Sbjct: 121 AQRVVNELKDKAPMVMAMGVGASPPPPLSDAPDEVVETAARPPAAPPAPVASAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG  +A  AV     ++ ++ D + +IR AL+ ++
Sbjct: 181 LGNLGYGPGEAAGAVAQAAGEDGSL-DTAGLIRAALKLLA 219


>gi|78357366|ref|YP_388815.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|90134880|sp|Q30YX6|RUVA_DESDG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78219771|gb|ABB39120.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 201

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 9/196 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  + E   ++    GV Y ++ P   L+ L + G   + ++ T +R+D + 
Sbjct: 1   MIAYIEGRVAEVTEQSCVVVTQGGVGYEVHLPSHLLARLPEQGAAVSFYIHTVVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +RQ F++L S+  VGA+ A+ VLS     +L   +   +   + ++ GI  K
Sbjct: 61  LYGFSGWDERQTFLVLISISKVGAKTALAVLSLYRPDDLRRIVADDDVTALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I+ ELK K    S      ++             S   +A+ AL NLGY +++A  
Sbjct: 121 SAQHILLELKYKLKVESLPASAGLAAGVP--------GSVLRDAVQALGNLGYAEEEAAP 172

Query: 180 AVVSVLKKEKNIADDS 195
            + ++LK++ ++    
Sbjct: 173 VLKNILKQDPDLDVSE 188


>gi|311739557|ref|ZP_07713392.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305373|gb|EFQ81441.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 205

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +ID  GV Y      +TL  L + G+  T+     +++D + L
Sbjct: 1   MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGGEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K  + +         V+   A      +   +   AL+ LG+    A   
Sbjct: 120 AQRLALELKDKVAAFAPSEAAAAGSVDTAVAPAGG--AVVESVTEALIGLGFTDKGARPV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S      + AD S ++R AL  +
Sbjct: 178 VESAYADNPD-ADTSSLLRAALAQL 201


>gi|312196177|ref|YP_004016238.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c]
 gi|311227513|gb|ADP80368.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c]
          Length = 205

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +++V GV  ++ C   TL+ L  +G+   L     +R+ ++ L
Sbjct: 1   MIASVAGTVLSVSPTAAVVEVGGVGLLVQCTPATLAGL-AVGEPARLATALVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  +  LQ   GVG ++A  VL  +   E+  ++  ++   + ++PG+  K 
Sbjct: 60  YGFADADERDVYETLQGAAGVGPKLAQAVLGVLAPDEVRRAVADEDLAALTRVPGVGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K            +   +      + P    +   AL  LGY   +A  A
Sbjct: 120 AQRIVLDLKDKLGPPVGGAPARQAAGGRVLPAPRTAPEQVTD---ALGGLGYSTREAEDA 176

Query: 181 VVSVLKKEK-NIADDSQIIRLALRAI 205
           V +VL  +  +  D S ++R AL  +
Sbjct: 177 VAAVLAGDGTDTDDVSAMLRAALAFL 202


>gi|58040113|ref|YP_192077.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H]
 gi|81351699|sp|Q5FQC5|RUVA_GLUOX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58002527|gb|AAW61421.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H]
          Length = 200

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +  +  +  ++DV GV Y++    RTL+ L +      + +ET +R+D I+L
Sbjct: 1   MIGQLTGLVGQIEGERCIVDVNGVGYVVSASTRTLAVLPQPPSVARVLIETIVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R WF LL +VQ VGA+VA+ +LS     EL+ +I   +   + +  G+  ++
Sbjct: 61  FGFATTDERDWFRLLTTVQSVGAKVALAILSANNPGELLLAINAGDKGSLTRAAGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++EL+ K   +                 I S PS   +A+ AL  LG+ + +A   
Sbjct: 121 ADRILSELRNKVAKMPG------GGGTVSAPGIVSGPSVENDALLALAGLGFRRAEAWPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  VL + +N A     IRL+L+ ++
Sbjct: 175 LSKVLAENEN-ATLDLAIRLSLKDLA 199


>gi|296129641|ref|YP_003636891.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM
           20109]
 gi|296021456|gb|ADG74692.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM
           20109]
          Length = 202

 Score =  203 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  +++V GV  ++     TL+ L ++G    L     +R+D + L
Sbjct: 1   MIASVHGTVLAVRLDSAVLEVGGVGLLVQATPATLAGL-RVGQPGRLSTSLVVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R  F  +Q+V GVG R+A+ +L+  T   L  ++  ++   + ++PGI  K 
Sbjct: 60  FGFADDDERDVFETVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDIAALMRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  +  +                             + ALV LG+    A  A
Sbjct: 120 AQRIVLELGERLGAPDPTGG----------TPAAPSADHREQVVEALVGLGWPLRAAQDA 169

Query: 181 VVSVLKKEK---NIADDSQIIRLALRAISC 207
           V SVL          +   ++R ALR +  
Sbjct: 170 VASVLDGSAVPVGAGEVPGVLRAALRTLGS 199


>gi|325661158|ref|ZP_08149785.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472665|gb|EGC75876.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 200

 Score =  203 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  + E+ V+++VQG+ Y I+ P + ++ L  IG    +    ++R+D ++L
Sbjct: 1   MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F LL  V G+G +  + +LS++T  +L  +++  + K I+  PGI  K 
Sbjct: 61  FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K       +   ++   +  +           A+ ALV LGYG  ++  A
Sbjct: 121 AEKLIIELKDKL-----NIDDVLTKEEEVMSVPSGGADMQSEAVQALVALGYGSAESLKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V           ++++ +L+ +
Sbjct: 176 VKKV--PMTETMTVEELLKQSLKFM 198


>gi|269126344|ref|YP_003299714.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM
           43183]
 gi|268311302|gb|ACY97676.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM
           43183]
          Length = 202

 Score =  203 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D+ ++DV GV   + C   TL+ L ++G+  T+     +R+D + L
Sbjct: 1   MIAFVSGKVAAAGPDHAVVDVGGVGLTLQCTPATLAGL-RVGEQVTVPTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R  F LLQ+  GVG R+A+ +L+  +   L  ++   +   + ++PGI  K 
Sbjct: 60  FGFADDDERAVFELLQTASGVGPRLALAMLAVHSPNALRRAVAAGDVAALTKVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +  + S   +                  +     + L+NLG+   +A  A
Sbjct: 120 AQRIVLELKDRLGAPSGEEEAAAPA-------PARAEPWRTQVQTGLINLGWSAREAEAA 172

Query: 181 VVSVLK--KEKNIADDSQIIRLALRAIS 206
           V +V        +   S +++ ALR +S
Sbjct: 173 VEAVAAELDGGPLPPVSALLKSALRKLS 200


>gi|227503511|ref|ZP_03933560.1| Holliday junction DNA helicase motor protein [Corynebacterium
           accolens ATCC 49725]
 gi|227076014|gb|EEI13977.1| Holliday junction DNA helicase motor protein [Corynebacterium
           accolens ATCC 49725]
          Length = 202

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y      +TL  L + G+   +     +++D + L
Sbjct: 1   MIAALRGEVLHIGLDHGVIECGGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K    +     D +                 +   AL+ LG+ +  A   
Sbjct: 120 AQRLTLELKDKVKRFAGTPVPDAAPEATGAGG-----PVVDSVTEALLGLGFTEKAARPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +   +    AD S ++R AL  +
Sbjct: 175 VEAAYAEAP-AADTSTLLRAALAQL 198


>gi|150390102|ref|YP_001320151.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens
           QYMF]
 gi|167012654|sp|A6TQM4|RUVA_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149949964|gb|ABR48492.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens
           QYMF]
          Length = 194

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I     D ++++V G+ Y I   I + S + KIG   TLF    +R+D+  L
Sbjct: 1   MFEYMKGMIVEAQIDKIIVEVNGIGYRINSSINSASQV-KIGQVSTLFTHFVLREDEAHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +   F  L SV  +G +VA G+LS  T   L   I+  +++ IA+ PG+  K 
Sbjct: 60  YGFVDKEELAMFKKLISVSKIGPKVAAGILSTYTPQRLGAYIVSNDAQAIAKSPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K          D S V  +Q             + AL+ LGY + +   A
Sbjct: 120 AERMILELKDKI---------DDSQVEYDQNFFNHENKNNNEVVDALMALGYTKHEGEQA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V           ++IR AL  ++
Sbjct: 171 ASAVR---DTSLSTEEMIRKALNWLA 193


>gi|257417484|ref|ZP_05594478.1| holliday junction DNA helicase RuvA [Enterococcus faecalis AR01/DG]
 gi|257159312|gb|EEU89272.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ARO1/DG]
          Length = 204

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 1   MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 60  FGFGSLDEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201


>gi|228935741|ref|ZP_04098554.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228823979|gb|EEM69798.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 197

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + P +  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPSVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|37522453|ref|NP_925830.1| Holliday junction DNA helicase RuvA [Gloeobacter violaceus PCC
           7421]
 gi|44888383|sp|Q7NCU2|RUVA_GLOVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|35213454|dbj|BAC90825.1| holliday junction DNA helicase [Gloeobacter violaceus PCC 7421]
          Length = 206

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  ++G +  +       +  +DV GV Y ++   RT+  L +IG+   LF    +R+D
Sbjct: 1   MITFVRGMLAEVGPRSGQSWATVDVGGVGYRVWTHARTVGKLPRIGEEVKLFTLMIVRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            ++LFGFL   +R+ F  L SV G+G R+ + +L  +  TELV++I+  N++ +A  PG+
Sbjct: 61  AMQLFGFLEPGERELFGQLVSVSGIGPRMGLALLETLAPTELVQAILQGNTRALALAPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R+  EL+ +                       +          AL+ LG+   +
Sbjct: 121 GAKTAQRLALELRSRLSKWREE-------SGLSAMGARASSRVYEEVELALLALGFAPGE 173

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              A+ +V             +R A+  +S
Sbjct: 174 VVRALDAVAPAMAGEEQTEAWLRAAIAWLS 203


>gi|300362258|ref|ZP_07058434.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           gasseri JV-V03]
 gi|300353249|gb|EFJ69121.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           gasseri JV-V03]
          Length = 192

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV++DV G+ Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+      +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSTVAADLSPSLQDAVLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    I+ AL  +
Sbjct: 167 TPKLAKLPENTADG--YIKEALALL 189


>gi|55820159|ref|YP_138601.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus LMG
           18311]
 gi|55822047|ref|YP_140488.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus
           CNRZ1066]
 gi|81559960|sp|Q5M1Y4|RUVA_STRT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81561136|sp|Q5M6H5|RUVA_STRT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|55736144|gb|AAV59786.1| Holliday junction DNA helicase, subunit A [Streptococcus
           thermophilus LMG 18311]
 gi|55738032|gb|AAV61673.1| Holliday junction DNA helicase, subunit A [Streptococcus
           thermophilus CNRZ1066]
          Length = 196

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKHIVIETNGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L +      +        +         A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAELPAETTNTTANQTAGNQQL-------DEAMEALLALGYKSTE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +  +     A   Q I+ AL+ +
Sbjct: 172 VKAFFEDTNETA--EQYIKSALKML 194


>gi|256375826|ref|YP_003099486.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827]
 gi|255920129|gb|ACU35640.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827]
          Length = 198

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +++V GV + +     TL  L + G+   L     +R+D + L
Sbjct: 1   MISSLRGQVLSIGLDHAVVEVGGVGFAVQATPATLGSL-RRGEEAVLSTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     RQ F LLQ+V G+G R+A+  L+ +   +L  ++   +  V+ Q+PGI  K 
Sbjct: 60  FGFADADSRQLFGLLQTVSGIGPRLALATLAVLEPEKLRAALAEGSVSVLTQVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L++    D          + ++       + AL+ LG+   QA TA
Sbjct: 120 AERLVIELRDKVGQLATAPASD---------GVVAVGRVRDQVVEALLGLGFPAKQAETA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL ++ ++   S ++R AL  +
Sbjct: 171 VDGVLAEDPSLG-TSVVLRKALSGL 194


>gi|300741595|ref|ZP_07071616.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567]
 gi|300380780|gb|EFJ77342.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567]
          Length = 206

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G++  +  +  ++DV G   ++    RTLS L + G   TL     +R+D + L
Sbjct: 1   MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TATE+  ++   + K   ++PGI  K 
Sbjct: 60  YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    E+       ++    + AL +LG+ +  A  A
Sbjct: 120 ARRIVLELAGKLI---------LSEGQAEENAPAQGIAWKPQVMDALTSLGWSEKDADAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA-ISC 207
           + + ++   +   ++  +  ALR  ++ 
Sbjct: 171 IDAYVQHNPDAEKEAVGV--ALRGVLAS 196


>gi|29374722|ref|NP_813874.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583]
 gi|255974579|ref|ZP_05425165.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2]
 gi|256956955|ref|ZP_05561126.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5]
 gi|256964042|ref|ZP_05568213.1| holliday junction DNA helicase RuvA [Enterococcus faecalis
           HIP11704]
 gi|257078631|ref|ZP_05572992.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1]
 gi|257084064|ref|ZP_05578425.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1]
 gi|257087893|ref|ZP_05582254.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6]
 gi|257418785|ref|ZP_05595779.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11]
 gi|294780021|ref|ZP_06745400.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1]
 gi|300862283|ref|ZP_07108363.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD
           Ef11]
 gi|44888456|sp|Q839T6|RUVA_ENTFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29342180|gb|AAO79946.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583]
 gi|255967451|gb|EET98073.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2]
 gi|256947451|gb|EEU64083.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5]
 gi|256954538|gb|EEU71170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis
           HIP11704]
 gi|256986661|gb|EEU73963.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1]
 gi|256992094|gb|EEU79396.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1]
 gi|256995923|gb|EEU83225.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6]
 gi|257160613|gb|EEU90573.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11]
 gi|294452915|gb|EFG21338.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1]
 gi|300848808|gb|EFK76565.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD
           Ef11]
          Length = 204

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 1   MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 60  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201


>gi|228476722|ref|ZP_04061391.1| holliday junction DNA helicase RuvA [Streptococcus salivarius
           SK126]
 gi|228251671|gb|EEK10768.1| holliday junction DNA helicase RuvA [Streptococcus salivarius
           SK126]
          Length = 196

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L +   +      +    +         A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAELPTETTKTTPSQPEGNHQL-------DEAMEALLALGYKAAE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 172 IKAFFEGTNETA--EQYIKSALKML 194


>gi|56697949|ref|YP_168319.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3]
 gi|81349137|sp|Q5LNT7|RUVA_SILPO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56679686|gb|AAV96352.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3]
          Length = 224

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+YC  RTL+ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRSTDHVLIDVRGVGYIVYCSDRTLAALPGVGEVVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S  +++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  FGFMSLAEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWASVKSAKGVGPKT 120

Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNK-------------EQAHICSMPSFAINAI 164
           A RI+ +LK KA    ++   V Q M    +             + A      +    A+
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVAQAMEGAVEVVEVIEPAAPAPRKAAPPGGAGAATAGAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGYG   A  AV     +     +   +IR ALR ++
Sbjct: 181 SALSNLGYGPSDAAAAVAQAAAEAPEAGET-DLIRAALRLLA 221


>gi|94987628|ref|YP_595561.1| Holliday junction DNA helicase RuvA [Lawsonia intracellularis
           PHE/MN1-00]
 gi|123262079|sp|Q1MP37|RUVA_LAWIP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94731877|emb|CAJ55240.1| Holliday junction resolvasome, DNA-binding subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 199

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G I    E   ++    G+ Y ++    T S L   G+    ++   +R+D   
Sbjct: 1   MIAYLEGYIAEFGETSCVVATSSGIGYEVFLTTPTRSTLPNKGEQVRFYICHIVREDIQE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F++L S+  VGAR A+ +LS     +L + +I ++   + ++ GI  K
Sbjct: 61  LFGFETWDERQTFIVLTSISKVGARTALNMLSTFRPNDLRQCVIEEDIFALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K     +        + +         S   + ++ L  LGY +++++ 
Sbjct: 121 TAQHIFLELKYKLQIDGNSTTSSSPSIGQ---------SLFYDILTGLQGLGYTKEESSV 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + SVL+ E ++ D    +R  L+ +
Sbjct: 172 VIKSVLQHEPDL-DVGSALRRCLKQL 196


>gi|116627021|ref|YP_819640.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus
           LMD-9]
 gi|122268374|sp|Q03MX8|RUVA_STRTD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116100298|gb|ABJ65444.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           thermophilus LMD-9]
 gi|312277481|gb|ADQ62138.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           thermophilus ND03]
          Length = 196

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKHIVIETNGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L +      +        +         A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAELPAETTNTTANQTAGNQQL-------DEAMEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +  +     A   Q I+ AL+ +
Sbjct: 172 VKAFFEDTNETA--EQYIKSALKML 194


>gi|62147831|emb|CAH63577.1| putative holliday junction DNA helicase RuvA [Chlamydophila abortus
           S26/3]
          Length = 222

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 16  MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 75

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 76  LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 135

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q ++          + PS     I AL  LGY +  A  
Sbjct: 136 TAEKLMVDLKQKLADLLPLDAQILASWEP------AKPSCMEEGIQALAALGYPKSSAER 189

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 190 MIAEAMSELPDHASVAEILPIALKK 214


>gi|116629085|ref|YP_814257.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|238853828|ref|ZP_04644193.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4]
 gi|311111127|ref|ZP_07712524.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22]
 gi|122273917|sp|Q045Q3|RUVA_LACGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116094667|gb|ABJ59819.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus gasseri
           ATCC 33323]
 gi|238833523|gb|EEQ25795.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4]
 gi|311066281|gb|EFQ46621.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22]
          Length = 192

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV++DV G+ Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+ A    +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSAVATDLTPSLQDALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    I+ AL  +
Sbjct: 167 TPKLAKLPENTADG--YIKEALALL 189


>gi|306836241|ref|ZP_07469223.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           accolens ATCC 49726]
 gi|304567833|gb|EFM43416.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           accolens ATCC 49726]
          Length = 202

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y      +TL  L + G+   +     +++D + L
Sbjct: 1   MIAALRGEVLHIGLDHGVIECSGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K    +     D +                 +   AL+ LG+ +  A   
Sbjct: 120 AQRLTLELKDKVKRFAGTPAPDAAPEATGAGG-----PVVDSVTEALLGLGFTEKAARPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +    E   AD S ++R AL  +
Sbjct: 175 VEA-AYAEAPAADTSTLLRAALAQL 198


>gi|222153876|ref|YP_002563053.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J]
 gi|254767391|sp|B9DW68|RUVA_STRU0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222114689|emb|CAR43773.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J]
          Length = 197

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGQLTKITAKYIVVEANGLGYIIYV-ANPYSFSDSVNQTLTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVAAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +++    Q        +Q            AI AL+ LGY   +    
Sbjct: 120 AQQMILDLSGKFVTIPEGGQA-------QQMPKAKGNQQLDEAIEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +   + A   Q I+ AL+ +
Sbjct: 172 IRAFFEGTDDTA--EQYIKSALKML 194


>gi|326382127|ref|ZP_08203819.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198857|gb|EGD56039.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 201

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 12/204 (5%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  +  D+ +++  GV Y +     TL  L K G    L     +R+D + L+
Sbjct: 6   IASVSGEVIDIALDHAVVECAGVGYKVLATPPTLGSL-KRGGHVRLLTSMMVREDSMTLY 64

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF     R  F LLQ+V GVG R+AM  L+ +    L  ++   ++K +  +PGI  ++A
Sbjct: 65  GFTDPEARDLFGLLQTVTGVGPRLAMATLAVLEPDSLRRALAESDAKALTTVPGIGKRVA 124

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ EL+ K            +                     ALV LG+ +  A  AV
Sbjct: 125 ERLVVELRDKV----------TAGSAGAVPGAPVAAGAGAQVTEALVGLGFTEGAAQKAV 174

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            +VL  +   AD S ++R AL A+
Sbjct: 175 AAVLADDPG-ADSSSLLRSALTAL 197


>gi|163738342|ref|ZP_02145757.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388263|gb|EDQ12617.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis BS107]
          Length = 229

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 30/231 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV YI+YC  RT++ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-------------- 166
           A RI+ +LK KA  + ++       ++     +    +     + A              
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTIADAMDGPGLDVVESVAP----VEAGKTPRKAPPKAPSG 176

Query: 167 -----------LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                      L NLGYG   A  AV        + A+++++IR ALR ++
Sbjct: 177 AAAASAGALSALGNLGYGPSDAAAAVAEAAATYPD-ANEAELIRAALRLLA 226


>gi|22538230|ref|NP_689081.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           2603V/R]
 gi|25012088|ref|NP_736483.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           NEM316]
 gi|76799561|ref|ZP_00781690.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           18RS21]
 gi|77414038|ref|ZP_00790209.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515]
 gi|44888490|sp|Q8DWW6|RUVA_STRA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888493|sp|Q8E2R7|RUVA_STRA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|22535142|gb|AAN00954.1|AE014286_17 Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           2603V/R]
 gi|24413632|emb|CAD47709.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585090|gb|EAO61719.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           18RS21]
 gi|77159920|gb|EAO71060.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515]
          Length = 196

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  G+ Y+IY      S  G +    T+++   +R D   L
Sbjct: 1   MYDYIKGKLSKITAKFIVVETAGLGYMIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +  S          +++ +++         A+ AL+ LGY   +    
Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNL-------EEAMEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +    E       Q I+ +L+ +
Sbjct: 172 VKAFF--EGTNETVEQYIKSSLKML 194


>gi|258648476|ref|ZP_05735945.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC
           51259]
 gi|260851236|gb|EEX71105.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC
           51259]
          Length = 197

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L      ++  GV Y +   + T + +    +   L+V   +R+D   L
Sbjct: 1   MIDYIKGQIGELTPTSCTLETCGVGYELLISLNTYTAIQDRKE-AKLYVYEVIREDAYLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F LL SV GVG + A  +LS  +  EL   I ++N K++  + GI  K 
Sbjct: 60  YGFSTKQERQLFTLLISVSGVGGQTAKVILSSFSPGELANIIQMENVKLLRGVKGIGPKA 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K + +            ++ A      +    A+SAL  LG+    +   
Sbjct: 120 AQRIVLDLKDKVVGIEG------GTTVQQGAANAVNANAVAEAVSALTTLGFPPAASQKC 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++L++  N+    QII+ AL+ +
Sbjct: 174 VAALLQENPNLP-IEQIIKQALKLL 197


>gi|256618467|ref|ZP_05475313.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           4200]
 gi|256761914|ref|ZP_05502494.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3]
 gi|256960754|ref|ZP_05564925.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96]
 gi|257081405|ref|ZP_05575766.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol]
 gi|257088548|ref|ZP_05582909.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188]
 gi|256597994|gb|EEU17170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           4200]
 gi|256683165|gb|EEU22860.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3]
 gi|256951250|gb|EEU67882.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96]
 gi|256989435|gb|EEU76737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol]
 gi|256997360|gb|EEU83880.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188]
          Length = 204

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 1   MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 60  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEV--VTTSNQALAEALEALSALGYSDREIKR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201


>gi|188994697|ref|YP_001928949.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis ATCC
           33277]
 gi|229560115|sp|B2RJ07|RUVA_PORG3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188594377|dbj|BAG33352.1| probable Holliday junction DNA helicase RuvA [Porphyromonas
           gingivalis ATCC 33277]
          Length = 202

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I GL    ++I+  GV Y +   + T S   +      +++   +R+D   L
Sbjct: 1   MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAY-QGKKEGLIWITQLIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV GVG   A  +LS     EL   I    +  +  + GI +K 
Sbjct: 60  YGFSTKEERTLFGQLTSVSGVGPTTARLILSSYAPQELAALITTGQADALKAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LKGK   L +   + +S          +  +    AISAL  LG+       A
Sbjct: 120 AQRIIVDLKGKI-QLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+L ++ ++A    II+ ALR +
Sbjct: 179 VKSILSEDSSLA-VEDIIKRALRML 202


>gi|116670849|ref|YP_831782.1| Holliday junction DNA helicase RuvA [Arthrobacter sp. FB24]
 gi|166230514|sp|A0JXB2|RUVA_ARTS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116610958|gb|ABK03682.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter sp. FB24]
          Length = 214

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +ID+ G    +    +TLS L + G+   LF    +R+D + L
Sbjct: 1   MISFLRGTVAHVGLSSAVIDLNGAGMSVNATPQTLSGL-RTGEEGKLFTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R+ F +L SV GVG R+A+ VL+      +  +    + K   ++PGI  K+
Sbjct: 60  FGFSSDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDGKAFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +                     +   +    ++A+ +LG+ +  AT++
Sbjct: 120 AGRIVLELAGKLVPHG--------TGAAAAPAAAASAPWKPQVVAAMTSLGWSEKDATSS 171

Query: 181 VVSVLKKEKNIAD---DSQIIRLALRAI 205
           +   L     +      ++I+R  LR +
Sbjct: 172 IDKALSDSPELEAGGQVAEILRATLRWL 199


>gi|331085084|ref|ZP_08334171.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408784|gb|EGG88249.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 200

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  + E+ V+++VQG+ Y I+ P + ++ L  IG    +    ++R+D ++L
Sbjct: 1   MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F LL  V G+G +  + +LS++T  +L  +++  + K I+  PGI  K 
Sbjct: 61  FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K       +   ++   +  +           A+ ALV LGYG  ++  A
Sbjct: 121 AEKLIIELKDKL-----NIDDVLTKEEEVMSVPSGGADMQSEAVQALVALGYGSAESLKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V           ++++ +L+ +
Sbjct: 176 VKKV--PMTKTMTVEELLKQSLKFM 198


>gi|291456789|ref|ZP_06596179.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM
           20213]
 gi|291382066|gb|EFE89584.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM
           20213]
          Length = 208

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y +      LS L   G    ++   ++ QD + L
Sbjct: 1   MIGMLTGRVESVEADTALIDVGGVGYEVRMSATDLSRL-HTGTEARVYTYMNLSQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL    ++ F+ L  V G+G +VA  +LS +TA +L  +I   ++  +A+ PG+  K 
Sbjct: 60  HGFLDQASKKTFLQLIKVSGIGPKVAQSLLSTLTAGQLARAIADNDAAALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG     S  + Q              + +     I  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-----SIDLSQIEGASPSGAKVQAQVDTSMEQVIEGLISLGWRQQDAQQA 174

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V    +        +  D  +++RLAL  +
Sbjct: 175 VAEACEDNDIPTPLDTDDVPRVLRLALALM 204


>gi|302541121|ref|ZP_07293463.1| Holliday junction DNA helicase RuvA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458739|gb|EFL21832.1| Holliday junction DNA helicase RuvA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 206

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 15/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  +  +I+V GV   + C   TLS L +IG+   L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPNTAVIEVGGVGMALQCTPGTLSGL-RIGEAARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHAPDALRLAVSTGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +          +        A   +   ++    +ALV LGY   +A  A
Sbjct: 120 AQKLLLELKDRL--------GEPVGTTVPAARPPAAAGWSDQLHTALVGLGYATREADEA 171

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      E  +   +Q++R AL+ ++
Sbjct: 172 VSAVTPQAEAALAEGGMPQVAQLLRAALQTLN 203


>gi|189218506|ref|YP_001939147.1| Holliday junction resolvasome, DNA-binding subunit
           [Methylacidiphilum infernorum V4]
 gi|189185364|gb|ACD82549.1| Holliday junction resolvasome, DNA-binding subunit
           [Methylacidiphilum infernorum V4]
          Length = 211

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 100/208 (48%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      +++++V+G+ + ++C +     L  +    TL+    + ++++ L
Sbjct: 12  MISYLKGTLIYSLFPHIIVEVRGIGFEVFCSLSLFRNLPPLYSELTLYTHLEVSENRLEL 71

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           FGF    ++  F LL   V GVG R A+ +L+ +  +EL  ++   + +++++I GI  K
Sbjct: 72  FGFKDLEEQLTFRLLVEKVHGVGPRTALSILNVLPPSELKAAVGRADFRLLSKIKGIGEK 131

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK    +  +      + V               +A+ ALV LGY + +A  
Sbjct: 132 TAHRLVVELKDSWATAEASSSSGTAIVGDR---------VFEDALRALVALGYKEPEALK 182

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            +  V +K     D   II+  L+ ++ 
Sbjct: 183 RLRRVREKHPQ-MDLEGIIKECLK-LAS 208


>gi|15618530|ref|NP_224816.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae
           CWL029]
 gi|15836152|ref|NP_300676.1| Holliday junction DNA helicase motor protein [Chlamydophila
           pneumoniae J138]
 gi|16752420|ref|NP_444679.1| Holliday junction DNA helicase motor protein [Chlamydophila
           pneumoniae AR39]
 gi|33241977|ref|NP_876918.1| Holliday junction DNA helicase motor protein [Chlamydophila
           pneumoniae TW-183]
 gi|6685955|sp|Q9Z7T4|RUVA_CHLPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|4376917|gb|AAD18759.1| Holliday Junction Helicase [Chlamydophila pneumoniae CWL029]
 gi|7189062|gb|AAF38010.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae AR39]
 gi|8978992|dbj|BAA98827.1| holliday junction helicase [Chlamydophila pneumoniae J138]
 gi|33236487|gb|AAP98575.1| RuvA [Chlamydophila pneumoniae TW-183]
 gi|269302404|gb|ACZ32504.1| holliday junction DNA helicase RuvA [Chlamydophila pneumoniae
           LPCoLN]
          Length = 207

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  ++   ++I+ QG+ Y I    R  + C+  +     +F     R+ +  
Sbjct: 1   MYDYIRGTLTYVHTGAIVIECQGIGYHIAITERWAIECIRALHQDFLVFTHVIFRETEHL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F +L S  G+G ++A+ +L+ +    L   +  ++ + +A + GI  K
Sbjct: 61  LYGFHSREERECFRILISFSGIGPKLALAILNALPLKVLCSVVRSEDIRALASVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M ELK K   L  +  +       E +   +  S     I AL  LGY +  A  
Sbjct: 121 TAEKLMVELKQKLPDLLPLDSR------VETSQTHTTSSCLEEGIQALAALGYSKIAAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K     +  + I+ +AL+ 
Sbjct: 175 MIAEAIKDLPEGSSLTDILPIALKK 199


>gi|329116352|ref|ZP_08245069.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD
           2020]
 gi|326906757|gb|EGE53671.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD
           2020]
          Length = 197

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGQLTKITAKYIVVEANGLGYIIYV-ANPYSFSDSVNQQVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEEEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +       +D +  +K  A           AI AL+ LGY   +    
Sbjct: 120 AQQMILDLAGKFVE----APKDSAPTSKANA---GGNLQLDEAIEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 172 IRAFFEGTDETA--EQYIKSALKML 194


>gi|332523205|ref|ZP_08399457.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314469|gb|EGJ27454.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 197

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG ++ +   Y++++  G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGKLKKITAKYIVVEANGLGYIIYV-ANPYSFTDSVNQNVTIYLHQVIREDAHIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVRAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +  S   QQ           +         AI AL+ LGY   +    
Sbjct: 120 AQQMILDLAGKFVDSSEPSQQQSQAKRNSNQQL-------DEAIEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+LAL+ +
Sbjct: 172 IRAFFEGTDETA--EQYIKLALKML 194


>gi|313847675|emb|CBY16663.1| putative holliday junction DNA helicase RuvA [Chlamydophila
           psittaci RD1]
          Length = 222

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++++ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 16  MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 75

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 76  LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 135

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q  +          + PS     I AL  LGY +  A  
Sbjct: 136 TAEKLMVDLKQKLADLLPLDSQITASWGP------AKPSCMEEGIQALAALGYPKSSAER 189

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 190 MIAEAMSELPDHASIAEILPIALKK 214


>gi|323489997|ref|ZP_08095218.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus
           donghaensis MPA1U2]
 gi|323396293|gb|EGA89118.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus
           donghaensis MPA1U2]
          Length = 198

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++I+ QG+ + I+ P    S      +   +F+  H+R+D   L
Sbjct: 1   MYDYIKGTVTRVTPEYLVIEQQGIGWQIFAP-NPYSF---GTEDLQVFLHHHVREDAQLL 56

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   R+ F  L SV G+G + A+ +L+      ++E+I  +N   + + PG+  K 
Sbjct: 57  FGFPTFEQRELFRKLISVSGIGPKGALAILASGQPQHVIEAIEQENESYLVKFPGVGKKT 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK          D   V      + +       A+ AL  LGY + +    
Sbjct: 117 ARQMILDLKGKLTEFFG----DSLGVEDTSNLLSNDQLELEEAMLALGALGYSEREINK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+      D    ++ AL+ +
Sbjct: 172 VKPQLRDLD--LDTEGFMKKALQLL 194


>gi|239939964|ref|ZP_04691901.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL
           15998]
 gi|239986448|ref|ZP_04707112.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL
           11379]
 gi|291443395|ref|ZP_06582785.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           roseosporus NRRL 15998]
 gi|291346342|gb|EFE73246.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           roseosporus NRRL 15998]
          Length = 208

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGKEARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFRDDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +            + + ++         +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGEPVG------AHIGQQGIGTPVTAGWRDQLQAALIGLGYATREADEA 173

Query: 181 VV------SVLKKEKNIADDSQIIRLALRAIS 206
           V            E       Q++R AL+ ++
Sbjct: 174 VNAVAPQAEAAAAEGTAPPVPQLLRAALQTLN 205


>gi|322377268|ref|ZP_08051760.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334]
 gi|321281981|gb|EFX58989.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334]
          Length = 197

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITRITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNINYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAV------QTSAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|291165807|gb|EFE27855.1| holliday junction DNA helicase RuvA [Filifactor alocis ATCC 35896]
          Length = 198

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G IE L  D +L+   GV Y I     T+    K      L+ +  +R+D I L
Sbjct: 1   MIGLLYGEIEELSLDSILLVCSGVGYEIQVSQNTMEH-CKQHSNIRLYTKMIVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +++ F  L SV  +G +V + +LS     ++   I+  N + ++++ G+  K 
Sbjct: 60  IGFFEKSEKELFEQLTSVSKIGPKVGLSILSTYQVDQIKSYIVTANIEKLSKVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K               N        +     +AI ALV+LG+ ++++  A
Sbjct: 120 AERIVLELKDKISHFE--------IDNDAIEIASPINQTEDDAIEALVSLGFSKNESYDA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V K++       ++I LAL  +S
Sbjct: 172 VQEV-KQQYTAQSLDELIPLALSKLS 196


>gi|328950866|ref|YP_004368201.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451190|gb|AEB12091.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus
           hydrothermalis DSM 14884]
          Length = 201

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 13/204 (6%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +    ED  +I   G+ + ++CP  TL  L + G+   L     +R+D   L+
Sbjct: 10  IRFLQGRLVDKREDRAVILTGGIGFEVWCPTPTLETL-REGEEVALHTRLVVREDGFTLY 68

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF   +  + F LL SV GVG RVA+G+L+ +  + L  ++   ++K +   PG+  ++A
Sbjct: 69  GFHDPVYLELFDLLTSVSGVGPRVALGMLAALPPSLLGRAVAEGDAKALTAAPGVGKRLA 128

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI+ EL+ K  +  +                      A  AI AL  LG+ + Q  T V
Sbjct: 129 ERIVLELRHKIPAHLTA-----------GGGAHRANPNAHEAIEALAALGFREAQVRTVV 177

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            ++  ++   A   ++IR ALR +
Sbjct: 178 GTLAAQDPE-APVEELIRRALRQL 200


>gi|261417028|ref|YP_003250711.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373484|gb|ACX76229.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 202

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +      +V+++  GV Y +     T   L + G    L     +R+D + L
Sbjct: 1   MIERIRGVLVQKSPTFVVVECAGVGYGVNISAFTAGKLPEEGAEVILHTNLVVREDSMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  F++L  V GVG ++A  +LS  T  +L+  I   N   + +I G+  K 
Sbjct: 61  FGFADTTEKNLFLMLLEVNGVGPKLAQRILSGSTPADLLNMIASDNKSALGKIKGLGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             ++   LK KA   S+++Q            + ++    + A+ AL  LG     A  A
Sbjct: 121 CEQMTLTLKEKA---SNMLQALGDVEGSGITSVGALTGAKLEAVLALHTLGVKDPAAEKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           VV  ++   + AD + +I  AL+ +
Sbjct: 178 VVKAVEVLGDGADAAALIPEALKYL 202


>gi|76787979|ref|YP_330625.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909]
 gi|77405120|ref|ZP_00782219.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B]
 gi|77410868|ref|ZP_00787225.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           CJB111]
 gi|90135931|sp|Q3JYM8|RUVA_STRA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76563036|gb|ABA45620.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909]
 gi|77163086|gb|EAO74040.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           CJB111]
 gi|77176263|gb|EAO79033.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B]
 gi|319745991|gb|EFV98273.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           agalactiae ATCC 13813]
          Length = 196

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  G+ Y+IY      S  G +    T+++   +R D   L
Sbjct: 1   MYDYIKGKLSKITAKFIVVETAGLGYVIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +  S          +++ +++         A+ AL+ LGY   +    
Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNL-------EEAMEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +    E       Q I+ +L+ +
Sbjct: 172 VKAFF--EGTNETVEQYIKSSLKML 194


>gi|77408136|ref|ZP_00784882.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1]
 gi|77173236|gb|EAO76359.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1]
          Length = 196

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  G+ Y+IY      S  G +    T+++   +R D   L
Sbjct: 1   MYDYIKGKLSKITAKFIVVETAGLGYVIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +  S          +++ +++         A+ AL+ LGY   +    
Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNL-------EEAMEALLALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +    E       Q I+ +L+ +
Sbjct: 172 VKAFF--EGTNDTVEQYIKSSLKML 194


>gi|255971607|ref|ZP_05422193.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1]
 gi|257421400|ref|ZP_05598390.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98]
 gi|255962625|gb|EET95101.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1]
 gi|257163224|gb|EEU93184.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98]
 gi|323479298|gb|ADX78737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis 62]
          Length = 204

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 1   MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 60  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTVTEV--VTTSNQALAEALEALSALGYSDREIKR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201


>gi|260102901|ref|ZP_05753138.1| crossover junction endoribonuclease subunit A [Lactobacillus
           helveticus DSM 20075]
 gi|260083290|gb|EEW67410.1| crossover junction endoribonuclease subunit A [Lactobacillus
           helveticus DSM 20075]
          Length = 196

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +   Y+++DV GV Y +Y P          GD   +F+E  +R   I L
Sbjct: 1   MYEYFEGIVTVITPSYIVVDVNGVGYKVYSPTPFAYQ---KGDKAKIFIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ D++ F+ L SV G+G + A+ +++   A  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSEDDKELFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK           ++ ++++     ++P    +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLRDY-------VARLDRQDEEQGNIPPALNDALLALIALGYTQKELDRI 170

Query: 181 VVSVLKKEKNIAD 193
              + +   + AD
Sbjct: 171 TPKLEEVNADTAD 183


>gi|119383447|ref|YP_914503.1| Holliday junction DNA helicase motor protein [Paracoccus
           denitrificans PD1222]
 gi|166230580|sp|A1AZW3|RUVA_PARDP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119373214|gb|ABL68807.1| Holliday junction DNA helicase RuvA [Paracoccus denitrificans
           PD1222]
          Length = 223

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 16/221 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I    +D+VLIDV+GV YI++   RT + L   G    L+ E  +R+D ++L
Sbjct: 1   MIGRIAGVILHRAQDHVLIDVRGVGYIVHVSERTAANLPPAGQATALYTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+++W  LL SVQGVGA+VA+ +L  +    L  ++ L +   + + PG+  K+
Sbjct: 61  FGFPTLLEKEWHRLLTSVQGVGAKVALAILGTLGPDGLSRALALGDWSALRKAPGVGPKL 120

Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQ------------AHICSMPSFAINAIS 165
           A R++ ELK KA    +L   +  D   + + +                S      +A+S
Sbjct: 121 AQRVVMELKDKAPAVMALGGALTVDPGPLPEVELVEAAVPAPVPAKAAPSSAQATADALS 180

Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           AL NLGY       + V+     +  A  + +IR ALR ++
Sbjct: 181 ALGNLGYAPS-EAASAVAEAAAREPAAPTAALIRAALRLLA 220


>gi|229597664|pdb|2ZTC|A Chain A, Mtruva Form Ii
 gi|229597665|pdb|2ZTC|B Chain B, Mtruva Form Ii
 gi|229597666|pdb|2ZTC|C Chain C, Mtruva Form Ii
 gi|229597667|pdb|2ZTC|D Chain D, Mtruva Form Ii
 gi|229597668|pdb|2ZTD|A Chain A, Mtruva Form Iii
 gi|229597669|pdb|2ZTD|B Chain B, Mtruva Form Iii
 gi|229597670|pdb|2ZTE|A Chain A, Mtruva Form Iv
          Length = 212

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 17  MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 75

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L + +   N   + ++PGI  + 
Sbjct: 76  YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 135

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K                   A   +  +     + ALV LG+   QA  A
Sbjct: 136 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 184

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +VL    +    S + R AL  +
Sbjct: 185 TDTVLAANHDATTSSAL-RSALSLL 208


>gi|254511523|ref|ZP_05123590.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium
           KLH11]
 gi|221535234|gb|EEE38222.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium
           KLH11]
          Length = 225

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 18/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV Y++YC  RT++ L  +G+  +++ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRAADHVLIDVRGVGYLVYCSDRTMAALPGVGEAVSIYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS ++++W  LL SVQGVGA+V++ +LS +    +  +I L +   +    G+  K 
Sbjct: 61  YGFLSLVEKEWHRLLCSVQGVGAKVSLAILSALGPDGVSRAIALGDWGAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-----------------INA 163
           A RI+ +LK KA  + ++       ++     +  +   A                   A
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPPLEVVELAEPAPAPKRGAQPASGAAAASAGA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SAL NLGYG   A +AV        + A ++ +IR AL+ ++
Sbjct: 181 LSALANLGYGPSDAASAVAEAAASLPD-AGEADLIRAALKLLA 222


>gi|309799338|ref|ZP_07693581.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302]
 gi|308117005|gb|EFO54438.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302]
          Length = 197

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGRVNQEAQIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +        K  A   S       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLP------TKTAAPSSSDNQELEEAMEAMLALGYKAAE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +  +D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|154487345|ref|ZP_02028752.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis
           L2-32]
 gi|154083863|gb|EDN82908.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis
           L2-32]
          Length = 205

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G++E +     +I+V GV Y +  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASMHA-GQEIKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG +I LS +     +    E          A   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-SIDLSQIEGSSATASTPEDTG-------AEQVVEGLMSLGWHQQDAAHA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V +V    +     N  D  ++++LAL ++
Sbjct: 172 VQTVCADNQIETPLNAEDVPRVLKLALTSL 201


>gi|156741100|ref|YP_001431229.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM
           13941]
 gi|189045765|sp|A7NIB1|RUVA_ROSCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|156232428|gb|ABU57211.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM
           13941]
          Length = 197

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  G+ ++IY P + L+  G IG    LF    +R+D + L
Sbjct: 1   MIASVRGTLIAVAADHVVIETGGIGWMIYAPRQVLAAPGDIGAEMRLFTCLIVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   RQ F  L SV GVG + A+ +LS  T  EL  +I   +   +A+ P I  K+
Sbjct: 61  YGFKTVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVARLARTPRIGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK          D+  +        ++ +        LV+LG+   +A+TA
Sbjct: 121 AERLVLELKGKL---------DIKGLPVAPGVSPAVAAVNAELSEMLVSLGFSSAEASTA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + ++        D  + +RLALR    
Sbjct: 172 IAALPPDAP--LDLEERLRLALRYFGA 196


>gi|103485830|ref|YP_615391.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis
           RB2256]
 gi|123380148|sp|Q1GWB4|RUVA_SPHAL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|98975907|gb|ABF52058.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis
           RB2256]
          Length = 199

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++     + +IDV GV Y++    RTL  LG +G   T+  E  + +D +RL
Sbjct: 1   MIAKLTGRLDSNGAGHAVIDVGGVGYLVEASARTLDALGAVGGEVTIHTEMLVGEDFLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL SVQGVGA+VA+ +LS +   +L  ++   +S +IA+  G+  K+
Sbjct: 61  LGFARAEERDWFRLLTSVQGVGAKVALAILSALEVADLQRALASGDSAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK KA +L  +     +        + +      +AI+AL  LG+   +A+ A
Sbjct: 121 AQRITHELKDKAGALGGISGSGPA--------LSAAAGPVGDAIAALTGLGFKPGEASAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +  ++    A    ++R+AL+ 
Sbjct: 173 VAAANEELGADASLDALVRVALKK 196


>gi|322388581|ref|ZP_08062181.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           infantis ATCC 700779]
 gi|321140501|gb|EFX36006.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           infantis ATCC 700779]
          Length = 197

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +        K  A   S       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPA------KTAAPSSSDNQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +  +D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|254474829|ref|ZP_05088215.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp.
           R11]
 gi|214029072|gb|EEB69907.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp.
           R11]
          Length = 229

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV YI+YC  RT++ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSERTMAALPGVGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------------------- 161
           A RI+ +LK KA  + ++       ++     +                           
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVADAMDGPGLDVVEPADPVEPAKKPRKAPPKKPSGAAAA 180

Query: 162 --NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              A+SAL NLGYG   A  AV          A+++++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPE-ANEAELIRAALRLLA 226


>gi|254431586|ref|ZP_05045289.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001]
 gi|197626039|gb|EDY38598.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001]
          Length = 214

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 6/211 (2%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G+I   ++      +L+  +GV Y +    R    L   G    L +   +R+D
Sbjct: 1   MIGWLQGDIADPWQHDKRCGLLLLCRGVGYEVQVSQRDWRRLPPPGSPLALHIHQSIRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  F  L +V GVG ++AMG+L  +   ELV++I+  + + + Q PG+
Sbjct: 61  AWTLYGFTARQERDLFRDLVAVSGVGPQMAMGLLGALEMEELVQAIVQPDLRRLCQAPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+ +         +  +  + EQ    +  S   +    LV+LG+   +
Sbjct: 121 GKRTAERLAVELRVRLQERYLGAVETAAEADPEQLPGLADGS-RDDICGTLVSLGFADLE 179

Query: 177 ATTAVVSVLKKE-KNIADDSQIIRLALRAIS 206
              A+ +V  +     A     IR  LR +S
Sbjct: 180 IHRALRAVASQGLTAEASTEDWIRDCLRWLS 210


>gi|306822725|ref|ZP_07456103.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium
           dentium ATCC 27679]
 gi|304554270|gb|EFM42179.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium
           dentium ATCC 27679]
          Length = 205

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +     LI+V GV Y I  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASMHA-GQEVKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A +I+ ELKG           D+S +    + I           +  L++LG+ Q  A  
Sbjct: 120 AQKIILELKG---------SIDLSQIETAASVISRPEDTGSEQVVEGLISLGWRQQDALH 170

Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205
           AV  V +        +  D  ++++LAL ++
Sbjct: 171 AVQEVCRSNDIATPLSNEDVPRVLKLALTSL 201


>gi|34540592|ref|NP_905071.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83]
 gi|44888375|sp|Q7MW36|RUVA_PORGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34396905|gb|AAQ65970.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83]
          Length = 202

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I GL    ++I+  GV Y +   + T S   +      +++   +R+D   L
Sbjct: 1   MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAY-QGKKEGLIWITQLIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV GVG   A  +LS     EL   I    +  +  + GI +K 
Sbjct: 60  YGFSTKEERTLFGQLTSVSGVGPTTAQLILSSYAPQELAALITTGQADALKAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LKGK   L +   + +S          +  +    AISAL  LG+       A
Sbjct: 120 AQRIIVDLKGKI-QLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+L ++ ++A    II+ ALR +
Sbjct: 179 VKSILSEDSSLA-VEDIIKRALRML 202


>gi|225021302|ref|ZP_03710494.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946035|gb|EEG27244.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 198

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +   + +I+  GV Y +     TL  L + G    + +   +R++   L
Sbjct: 1   MIVSLRGTVIDITAHHAVIECAGVGYQVLATPSTLGHLTR-GAETFILITMIVREESQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    R  F+ LQ+V G+G ++A+   S  T  EL  +I   ++K + +IPG+  ++
Sbjct: 60  YGFLDAATRDMFVTLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + ++      + V                 + AL +LG+ +  A   
Sbjct: 120 AERMVVDLKDKVATYATPETPTPAAV--------PHIDTYEQVLEALASLGFAEKTAEPV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +VL  +  +   + + R +L  +
Sbjct: 172 LTTVLAADPTLTTPAAL-RASLNLL 195


>gi|51473576|ref|YP_067333.1| Holliday junction DNA helicase motor protein [Rickettsia typhi str.
           Wilmington]
 gi|81390134|sp|Q68WZ1|RUVA_RICTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|51459888|gb|AAU03851.1| Holliday junction DNA helicase RuvA [Rickettsia typhi str.
           Wilmington]
          Length = 200

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 123/203 (60%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DYV+IDV GV Y++Y    TL+ L + G F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKIDSQCDDYVIIDVNGVGYLVYASGTTLAKLVE-GRFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G ++A+ +LS +T T++  +I   +  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIKIAINNDDKNIFKAISGVGDKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RIM ELKGK   + S      S + K+ ++I S+       I ALVNLG+ + +A   
Sbjct: 120 TERIMLELKGKIAKIFS-----SSAIIKDSSNISSVE--INEVIKALVNLGFTRFEAQNT 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I+ D ++I+ AL+
Sbjct: 173 VQGIITQNTKISID-ELIKTALK 194


>gi|255348878|ref|ZP_05380885.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70]
 gi|255503418|ref|ZP_05381808.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70s]
 gi|255507096|ref|ZP_05382735.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           D(s)2923]
 gi|289525546|emb|CBJ15024.1| holliday junction DNA helicase [Chlamydia trachomatis Sweden2]
 gi|296435106|gb|ADH17284.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/150]
 gi|296438826|gb|ADH20979.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/11023]
          Length = 200

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R L  L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHIDESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRDERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +       + +      +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|227888712|ref|ZP_04006517.1| crossover junction endoribonuclease subunit A [Lactobacillus
           johnsonii ATCC 33200]
 gi|227850739|gb|EEJ60825.1| crossover junction endoribonuclease subunit A [Lactobacillus
           johnsonii ATCC 33200]
          Length = 192

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +Y  Y+++DV GV Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVTKIYPAYIVLDVNGVGYKILCPTPYSY---DENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+ A    +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSAAAADLTPSLQDALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    ++ AL  +
Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189


>gi|305681259|ref|ZP_07404066.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659464|gb|EFM48964.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii
           ATCC 14266]
          Length = 198

 Score =  201 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +   + +I+  GV Y +     TL  L + G    + +   +R++   L
Sbjct: 1   MIVSLRGTVIDITAHHAVIECAGVGYQVLATPTTLGHLTR-GAETFILITMIVREESQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    R  F  LQ+V G+G ++A+   S  T  EL  +I   ++K + +IPG+  ++
Sbjct: 60  YGFLDAATRDMFATLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + ++      + V                 + AL +LG+ +  A   
Sbjct: 120 AERMVVDLKDKVATYAAPETPTTAAV--------PHTDTYEQVLEALASLGFAEKTAEPV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +VL  +  +   + + R +L  +
Sbjct: 172 LTTVLAADPTLTTPAAL-RASLNLL 195


>gi|119025822|ref|YP_909667.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           adolescentis ATCC 15703]
 gi|166230520|sp|A1A1K2|RUVA_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118765406|dbj|BAF39585.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 205

 Score =  201 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G++E +     +I+V GV Y +  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASMHA-GQEIKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG +I LS +     +    E          A   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-SIDLSQIEGSSATASTPEDTG-------AEQVVEGLMSLGWHQQDAAHA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V +V    +     N  D  ++++LAL ++
Sbjct: 172 VQTVCADNQIETPLNAKDVPRVLKLALTSL 201


>gi|312865841|ref|ZP_07726063.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415]
 gi|311098716|gb|EFQ56938.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415]
          Length = 196

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y++++  G+ Y++       S   ++     +++   +R+D   L
Sbjct: 1   MYDYLKGILTKITAKYIVVEAGGLGYMVNV-ANPYSFSDQMNQDIQIYLHYVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  YGFHNEEEKAVFLNLISVSGIGPTTALAIVAVDDNEGLVAAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +            K      S       A+ AL  LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEVPQ-------ADGKTSPQAQSTNQNLNEAMEALQALGYKASE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    +     A     I+ AL+ +
Sbjct: 172 VRVFFEGTDETA--ENYIKSALKML 194


>gi|293400498|ref|ZP_06644643.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305524|gb|EFE46768.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 194

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I     D ++ID  G+ Y +Y        L       TLF   H+R+D I L
Sbjct: 1   MIAFIRGTIHSYSNDSLIIDNNGIGYRVYIANPQAVRL---NTEVTLFTYQHVREDAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +   F+ L SV+GVG + A+G+L+   A  ++ +I   + K +  +PGI  K 
Sbjct: 58  FGFTSMEEHDLFLQLISVKGVGPKTALGMLAVCPAKNMIMAIENNDVKTLKGLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LK K +   + ++                 +  ++AI AL  LGY   + ++ 
Sbjct: 118 ASQIVLDLKNKLVEEVTEIE-------------AKENAQLLDAIEALKALGYKNAEISS- 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L   +      Q IR AL  ++
Sbjct: 164 VKKELMAMEESTTSDQYIRKALSILA 189


>gi|294010085|ref|YP_003543545.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium
           japonicum UT26S]
 gi|292673415|dbj|BAI94933.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium
           japonicum UT26S]
          Length = 202

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 107/204 (52%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y++    RTL+ LG +G+  T+  E  +  D IRL
Sbjct: 1   MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSDDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG+RVA+ +LS +   EL  ++   +  +IA+  G+  K+
Sbjct: 61  VGFARAEERDWFRLLTGVQGVGSRVALAILSALEPVELHRAVAAGDKAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K  +         +               + +AISAL NLG+   +A+ A
Sbjct: 121 AQRIANELKDKIGA-----APMPAGAVGAGFAALPTGGHSADAISALQNLGFKPAEASIA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +  ++    A    ++RLALR 
Sbjct: 176 VAAAEEELGEDASLDALVRLALRK 199


>gi|219669644|ref|YP_002460079.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539904|gb|ACL21643.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense
           DCB-2]
          Length = 198

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 108/203 (53%), Gaps = 8/203 (3%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           ++G +  +  D +++DVQGV Y +  P   L      G    L+    +R+D++ L+GF 
Sbjct: 2   LRGKVWEIQADKLILDVQGVGYQLSIPYGLLGK-AHPGHELILYTHVILREDELALYGFS 60

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S  +++ F+L+ SV G+G + A+ +LS +   +   +I  +N  ++ ++PGI  K A R+
Sbjct: 61  SAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKTAQRL 120

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + ELK K         + ++    E A      +F   A+  L+ LG+ Q++A  A+ ++
Sbjct: 121 ILELKEKFKG------RAIALEGIEGAGSLPQAAFHSEAMETLLALGFSQEEAKKALQAL 174

Query: 185 LKKEKNIADDSQIIRLALRAISC 207
               + ++ + Q +RLALR+++ 
Sbjct: 175 PDSAQALSTEEQ-VRLALRSLAA 196


>gi|317472815|ref|ZP_07932126.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA]
 gi|316899734|gb|EFV21737.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA]
          Length = 198

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +     +++  G+ Y I  P       G IG    ++   H+R+D I L
Sbjct: 1   MISYIKGILVSMTPGGAVVENNGIGYDIMMPAG-QEFPGGIGQEVRIYTHMHVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F LL  V G+G +V + VLS ++  EL  +++  +SK I++ PG+  K 
Sbjct: 60  FGFRTKEELEAFELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ EL+ K         + M       A      +        LV+LGY + +A  A
Sbjct: 120 AKKLILELRDKLDFEEFEQAEPMDFAGDLPAEDSVAVTA-----QGLVSLGYSRSEAMMA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +        Q+++ AL  +
Sbjct: 175 IKKV--ENAAEYSPEQLLKKALTKL 197


>gi|307708034|ref|ZP_07644503.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC
           12261]
 gi|307615924|gb|EFN95128.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC
           12261]
          Length = 197

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +         ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDFPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|297243469|ref|ZP_06927401.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis AMD]
 gi|296888514|gb|EFH27254.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis AMD]
          Length = 209

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 10/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LI V GV Y  Y P + LS L + G    ++    + QD + L
Sbjct: 1   MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+ +Q V G+G +VA+ +LS +    L+++I   +   ++  PG+  K 
Sbjct: 60  YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG   SL   +  D S  +  Q++   + S     I  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG---SLDPSILADSSN-DSTQSNKQIVDSSVQCVIEGLISLGWRQVDAQRA 175

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V  V  +       + AD   ++R+AL ++
Sbjct: 176 VEQVCAENNISTPISDADLPNVLRMALASL 205


>gi|297616928|ref|YP_003702087.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144765|gb|ADI01522.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 201

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D V +DV GV + +  P R L+ +  IG    L+      +++ R+
Sbjct: 1   MIAFLRGILVDTGTDCVYLDVNGVGFEVTVPPRVLNRVTCIGQEVFLYTYLQTLENEFRI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +RQ F  L S+ G+GA+  +G++S +T  EL  +++ Q+ K +  +PGI  K 
Sbjct: 61  YGFLDEDERQLFRTLLSIPGLGAKTCLGIVSSMTTEELYRAVLAQDEKSLTSVPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K      +                ++ S   + ISAL  LG+   +    
Sbjct: 121 AQRLIFELQNKWPKTDLIA----------TTASENLRSSWTDTISALETLGFKSSELIPI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  +  K +      + +R  LR
Sbjct: 171 LSQLQAKNELGEAVEENVRKVLR 193


>gi|42518563|ref|NP_964493.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC
           533]
 gi|81668203|sp|Q74KV9|RUVA_LACJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|41582848|gb|AAS08459.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC
           533]
 gi|329666839|gb|AEB92787.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii DPC
           6026]
          Length = 192

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y+++DV GV Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSY---DENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+      +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSTAAADLTPSLQDALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    ++ AL  +
Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189


>gi|110635507|ref|YP_675715.1| Holliday junction DNA helicase motor protein [Mesorhizobium sp.
           BNC1]
 gi|123161737|sp|Q11DH5|RUVA_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110286491|gb|ABG64550.1| Holliday junction DNA helicase subunit RuvA [Chelativorans sp.
           BNC1]
          Length = 206

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 90/207 (43%), Positives = 135/207 (65%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ ++DV GV Y+ +C  R+LS LG +G   TLF+ET++R+D IRL
Sbjct: 1   MIGKLKGVLDEIGEDHCVVDVGGVGYVAHCSARSLSTLGSVGTPVTLFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF + L+R+WF LLQ +VQGVGA+VA+ VLS +T +EL  +I L++   +A+ PG+  K
Sbjct: 61  YGFRTVLEREWFRLLQNNVQGVGAKVALSVLSTLTPSELANAIALRDIATVARAPGVGRK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    K+       P+   +A+SAL NLGY +D A  
Sbjct: 121 VAERIVTELKSKAPAFAGEAAGAIGL--KQDLGEGVAPAPVSDAVSALANLGYSRDIAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD   +IRL L+ ++
Sbjct: 179 AVAAALKSAGEGADTGTLIRLGLKELA 205


>gi|161501897|ref|YP_219549.2| Holliday junction DNA helicase motor protein [Chlamydophila abortus
           S26/3]
 gi|90134722|sp|Q5L6Z3|RUVA_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 207

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 1   MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 61  LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q ++          + PS     I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLADLLPLDAQILASWEP------AKPSCMEEGIQALAALGYPKSSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 175 MIAEAMSELPDHASVAEILPIALKK 199


>gi|78187612|ref|YP_375655.1| Holliday junction DNA helicase RuvA [Chlorobium luteolum DSM 273]
 gi|123743607|sp|Q3B219|RUVA_PELLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78167514|gb|ABB24612.1| Holliday junction DNA helicase subunit RuvA [Chlorobium luteolum
           DSM 273]
          Length = 200

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +  +  +++V G+ Y       T   L + G+   L+    +R+D ++L
Sbjct: 1   MYAYFRGRVVSVLPEEAVLEVSGIAYRFLISTGTSRSLPQAGNEAILYTHLSVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++Q F LL  V GVG ++A+ VLS +   E+ E+I+    + +  + G+  K 
Sbjct: 61  YGFSSEEEKQLFRLLLLVSGVGPKLALAVLSGLPVAEVHEAILANAPERLFGVTGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + LS                         +A +AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDRILKLSPPGA-------AATPAGAVQCGIREDATNALLTLGFSRTAAQQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL+          +++ AL A+
Sbjct: 174 VAGVLEANPGG-SVEDVVKSALLAM 197


>gi|225869418|ref|YP_002745366.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus]
 gi|259495656|sp|C0MGC2|RUVA_STRS7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225702694|emb|CAX00805.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus]
          Length = 198

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDIKYLMRFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      +K              A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKPPKAKQQGNEQLDEAVEALLALGYKATE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKML 195


>gi|317057206|ref|YP_004105673.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7]
 gi|315449475|gb|ADU23039.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7]
          Length = 199

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y       TL  +       TL+    +R++ + L
Sbjct: 1   MIYSVRGKLIHTESELAVVECSGVGYACKTTFYTLQKIAGE-SEVTLYTYLAVRENDVDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F +L +V GVG + A+ +LS  T ++   ++   + K + +  GI  K 
Sbjct: 60  FGFSSQEELRCFKMLITVSGVGPKAALSILSSNTPSQFALTVATGDFKSLTKSKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +++  +    +    A           AI+ALV LGY + +A  A
Sbjct: 120 AQRIVLELKDKIAKENTISVRGGETI----ASAVPRGGALDEAITALVVLGYSEGEAAQA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +       +  A   ++I+ AL  ++
Sbjct: 176 LAGA----EPTATVEELIKTALVRLA 197


>gi|87302215|ref|ZP_01085040.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           5701]
 gi|87283140|gb|EAQ75096.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           5701]
          Length = 221

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 11/217 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G++   ++      +L+   GV Y +    R    L   G    L+    +R D
Sbjct: 1   MIGWLQGHVAEPWQQGNRCGLLLACAGVGYEVQLTRRHWELLPPAGSPLCLYTHQSIRDD 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF +  +R  F LL +V GVG ++A+ +L  +   ELV +I+  + + + + PG+
Sbjct: 61  GWTLFGFGARHERDLFRLLVAVSGVGPQMALALLGTMPCEELVRAIVQADLRRLCRAPGV 120

Query: 117 SMKIASRIMTELKGKAIS------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
             + A R+  EL+GK          +                     S        L  L
Sbjct: 121 GKRTAERLAVELRGKLAESFGAAAAAGDDDLLDGVAGSTDGDPGPAASTREELQLTLTAL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIA-DDSQIIRLALRAIS 206
           GY   + + A+ ++ ++  + A D    +   LR ++
Sbjct: 181 GYEPLEISRALRALGREGLDPAHDADAWLSACLRWLA 217


>gi|270291966|ref|ZP_06198181.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143]
 gi|270279494|gb|EFA25336.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143]
          Length = 197

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHVS-NPYAYSGQVNQETQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|320334037|ref|YP_004170748.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           maricopensis DSM 21211]
 gi|319755326|gb|ADV67083.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           maricopensis DSM 21211]
          Length = 200

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  + +   +I   GV Y + CP  TL+ L ++ D   L     +R+D   L+
Sbjct: 5   IAYLTGTVRDVRDTSAVIVAGGVGYEVLCPAPTLAKL-RVNDTAELHTRMVVREDAWTLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF      + F LL SV GVG ++ + +LS +    +   I+  +SK++A + G+  K A
Sbjct: 64  GFQDQDSIRLFDLLTSVTGVGPKLGLALLSAMPPHVIAGGILGSDSKLLASVSGVGKKTA 123

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ EL+ K         + ++  +          +   +A+ AL+ LG+ + Q    +
Sbjct: 124 ERLVLELQNKVP-------EHLAAASGRTTAPVVNSTVGQDAVEALLALGFREAQVRAVI 176

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +L  + N A   Q+IR +L  +
Sbjct: 177 SELLSADPN-ATADQLIRKSLGRL 199


>gi|89898693|ref|YP_515803.1| Holliday junction DNA helicase RuvA [Chlamydophila felis Fe/C-56]
 gi|123749524|sp|Q252Y0|RUVA_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89332065|dbj|BAE81658.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56]
          Length = 207

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I    R L  L  +      ++  T +R+ +  
Sbjct: 1   MYDYIRGILTYMSSGTMVIECQGLGFSICASDRWLMELAGLLHREVIVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F +L S  GVG +  + +L+    ++L      ++ K +A +PGI  K
Sbjct: 61  LYGFRSRGERECFRMLISFSGVGPKTGLAILNTFALSKLCSIARAEDVKALASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q ++          + PS   + I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLPELLPLDSQTLTSWKP------AKPSCMEDGIQALAALGYPKSSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 175 MIAEAITELPDNASLAEILPIALKK 199


>gi|213966124|ref|ZP_03394311.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum
           SK46]
 gi|213951222|gb|EEB62617.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum
           SK46]
          Length = 206

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  DY +I+  GV +++    R  S L +  +   +     +R+D I L
Sbjct: 1   MIASLRGEVIDLGADYCVIECGGVGHLVTITGRLASQLVR-HEQTFMLTTMAVREDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F LL++V  VG +VAM VLS ++  E+  ++  +N+K +    G+  ++
Sbjct: 60  FGFANSQEREMFALLRTVSTVGPKVAMSVLSVLSPAEIANAVASKNAKALQAANGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K    +              A    + +     + ALV LG+ +  A  A
Sbjct: 120 AERLLVELKDKVEVFADRAVSQPEEAASGAAPGIVLKADLDQVVGALVGLGFPEADANEA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V++ +  + D    ++ AL+ +
Sbjct: 180 AETVVRIDPTL-DTPMALKAALKTL 203


>gi|298252762|ref|ZP_06976556.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis 5-1]
 gi|297533126|gb|EFH72010.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis 5-1]
          Length = 209

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 10/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LI V GV Y  Y P + LS L + G    ++    + QD + L
Sbjct: 1   MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+ +Q V G+G +VA+ +LS +    L+++I   +   ++  PG+  K 
Sbjct: 60  YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG   SL S +  D S  +  Q++   + S     I  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELKG---SLDSSILADSSN-DSTQSNKQIVDSSVQCVIEGLVSLGWRQVDAQRA 175

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V  V  +       + AD   ++R+AL ++
Sbjct: 176 VEQVCAENNISIPISDADLPNVLRMALASL 205


>gi|281355312|ref|ZP_06241806.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC
           BAA-548]
 gi|281318192|gb|EFB02212.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC
           BAA-548]
          Length = 203

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        +IDV GV Y    P+ T   L + G+   L + T +R+D I L
Sbjct: 1   MIARLTGILAESSFSGCIIDVGGVGYEALIPLSTFDKLPQPGNKVELHIFTQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L +V G+G ++A+ VLS +  +    +I   + K +++I G+  + 
Sbjct: 61  FGFATPEEKKLFQQLINVSGIGGKIALSVLSSMPVSGFCSAIASGDIKSLSRISGVGKRT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L SV    +   + EQ    +  + A  A+     LG+ +D     
Sbjct: 121 AERMVVELRDK---LGSVAGGSVFVPDAEQGGELTAAAEAALAL---EQLGFKRDAIDKV 174

Query: 181 VVSVLKKEK-NIADDSQIIRLALRAIS 206
           + ++L +   +     +++R  +  ++
Sbjct: 175 LKTLLAELPKSEHTTDKLLRQGIIKLN 201


>gi|288923988|ref|ZP_06418058.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f]
 gi|288344666|gb|EFC79125.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f]
          Length = 217

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 11/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +E L     ++DV GV  +++C   TL+ L ++G+   L     +R+ ++ L
Sbjct: 1   MIASISGTVEALSPTSAVVDVGGVGILVWCTPATLARL-RVGERAKLSTTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F +LQ   GVG R+A  VL   +   +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFADADERDVFEILQGAAGVGPRLAQAVLGVHSPDAVRRAVAAEDLAALTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ K    S+ V      V             A     ALV LGY   +A  A
Sbjct: 120 AQRIVLDLRDKIGPPSAPVPAPRGAVAAAAVAELRPGGPAEQVRDALVGLGYSAREAQDA 179

Query: 181 VVSVLK----------KEKNIADDSQIIRLAL 202
           VV+                +  D + ++R +L
Sbjct: 180 VVAAGVAAGADAGVTGDAGDAVDPAALLRASL 211


>gi|154149661|ref|YP_001403279.1| Holliday junction DNA helicase RuvA [Candidatus Methanoregula
           boonei 6A8]
 gi|153998213|gb|ABS54636.1| Holliday junction DNA helicase RuvA [Methanoregula boonei 6A8]
          Length = 201

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G      + +V++DV G+ Y ++ P   +  +   G    L     +R+D I L
Sbjct: 1   MIAYLEGTPAATGDRWVVLDVNGIGYRVHVPEPEVREIAGAGTKVKLHTYMAVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + + + F ++  V G+G ++A+ +LS+I+  + V +I+  + K + +I GI  K 
Sbjct: 61  YGFLHESELELFTVIIGVSGIGPQIALNILSQISLEDFVLAILSGDEKSLTRISGIGPKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   +   +    +             +   +A SALV+LG+ +  +  A
Sbjct: 121 AKRLILELRDKMKKVQDAMTHTPAG---------RQDATLRDAASALVSLGFAEAASYDA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S  +         +I++ ALR +
Sbjct: 172 VASAARGLA-APTVQEIVKAALRLL 195


>gi|325678965|ref|ZP_08158563.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8]
 gi|324109469|gb|EGC03687.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8]
          Length = 199

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y       TL  +        L+    +R++ + L
Sbjct: 1   MIYSVRGKLIHTDGEMAVVECGGVGYACKTTFYTLQKIAGE-SEVMLYTYLAVRENDVDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F +L +V GVG + A+ +LS  + ++   ++   + K + +  GI  K 
Sbjct: 60  FGFSTTEELRCFKMLITVSGVGPKAALSILSSNSPSQFALTVATGDHKSLTKCKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +++  +    V    +    M      A++AL+ LGY + +A  A
Sbjct: 120 AQRIVLELKDKIAKENTISVRGGDTV----SAAPVMGGALQEAVTALIVLGYSEGEAAQA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +          A   ++I+ AL A++
Sbjct: 176 LAGA----DPNATVEELIKKALIALA 197


>gi|328955749|ref|YP_004373082.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium
           glomerans PW2]
 gi|328456073|gb|AEB07267.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium
           glomerans PW2]
          Length = 206

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        LIDV GV Y +     T   L + G    LF    +RQD + L
Sbjct: 1   MISQLHGTLVDSSPTSALIDVAGVGYELGISGVTAQALPQPGSDVMLFTRLQVRQDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L +V  +GAR+A+  LS  T +++   +  +++  +A++PG+  K 
Sbjct: 61  FGFATREERAMFDRLIAVSSIGARLALATLSTFTVSQIRVIVAQEDAARMAEVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK            D S   +  A   S  S   +A +AL+++G+   +   A
Sbjct: 121 AQRLILELKSTLEKGDLPGCADAS--RESGAMSPSAGSAVDDARAALLSMGFSPQEVAVA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + ++  +E+ +     ++  ALR +  
Sbjct: 179 LETLGDEEREMR-VESVLAGALRRLGS 204


>gi|15605230|ref|NP_220016.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           D/UW-3/CX]
 gi|6685940|sp|O84509|RUVA_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3328938|gb|AAC68102.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436962|gb|ADH19132.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11222]
 gi|297748631|gb|ADI51177.1| RuvA [Chlamydia trachomatis D-EC]
 gi|297749511|gb|ADI52189.1| RuvA [Chlamydia trachomatis D-LC]
          Length = 200

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R L  L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +       + +      +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|289425381|ref|ZP_06427158.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187]
 gi|289428316|ref|ZP_06430003.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165]
 gi|295130717|ref|YP_003581380.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137]
 gi|289154359|gb|EFD03047.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187]
 gi|289158465|gb|EFD06681.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165]
 gi|291375923|gb|ADD99777.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137]
 gi|332675562|gb|AEE72378.1| holliday junction ATP-dependent DNA helicase RuvA
           [Propionibacterium acnes 266]
          Length = 201

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G +      +V++D  GV   + CP  T +   +I    +L     +R++ + L
Sbjct: 1   MISHFSGMVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K 
Sbjct: 60  YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ ELK K  +L+          +        +  +       LV LG+    A  A
Sbjct: 120 AAKMILELKDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKA 172

Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206
           V  V  LK+         ++R ALR+++
Sbjct: 173 VDKVAALKEADPAMTIGNLMRAALRSLA 200


>gi|315612298|ref|ZP_07887212.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis ATCC 49296]
 gi|315315691|gb|EFU63729.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis ATCC 49296]
          Length = 197

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 100/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDTHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAV------QTSAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|322517658|ref|ZP_08070523.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           vestibularis ATCC 49124]
 gi|322123735|gb|EFX95320.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           vestibularis ATCC 49124]
          Length = 196

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YII       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L +   +      +    +         A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAELPTETTKTTPSQPEGNHQL-------DEAMEALLALGYKAAE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +     A   Q I+ AL+ +
Sbjct: 172 IKVFFEGTNETA--EQYIKSALKML 194


>gi|261337766|ref|ZP_05965650.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM
           20093]
 gi|270277219|gb|EFA23073.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM
           20093]
          Length = 212

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 7/212 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LIDV GV Y +      L+ L  +G   T+F    + QD I L
Sbjct: 1   MIGMLSGQVAAVDTAAALIDVHGVGYEVRMAGADLATL-HVGQDATVFTSMSVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    ++ F+ LQ V G+G +VA+ +L  + A +L  +I   ++  +A+ PG+  K 
Sbjct: 60  FGFLDHAAKRMFLQLQKVSGIGPKVALSLLGTLDAGQLAHAIYDGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG ++ L+++     S  +   +         ++ + AL++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-SLDLAALDDASGSDTSVAASAHAPEDRGRLDVVEALISLGWRQQDAQHA 178

Query: 181 VVSVLKKE----KNIAD-DSQIIRLALRAISC 207
           V SV+ ++       AD   +++R AL ++  
Sbjct: 179 VDSVIHEQDLPTPLAADMVPEVLRAALTSLDS 210


>gi|283853683|ref|ZP_06370914.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B]
 gi|283570924|gb|EFC18953.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B]
          Length = 201

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +    E + ++    GV Y +  P    + L   G    LFV T +R+D + 
Sbjct: 1   MIGYVEGRVLARRERWAIVLTPGGVGYELELPDPVAAALPPQGGQVCLFVHTVVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  DR+ F  L  +  +G R A+ +LSR T  +L+  +   ++  + ++PGI  K
Sbjct: 61  LFGFATLDDRETFRTLIGITKLGPRTALAILSRFTTEDLLRIVATGDADALVRVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI  EL  K      V       +               + I+ L NLGY    A+ 
Sbjct: 121 SAQRIFIELTYKLEGKGPVSAGPHPAIGG---------GVLADVIAGLTNLGYPDADASR 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
              +VL+ E ++ D +Q +R AL+ ++ 
Sbjct: 172 VAGAVLEAEPDL-DVAQALRQALKRLAS 198


>gi|254391315|ref|ZP_05006519.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705006|gb|EDY50818.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           clavuligerus ATCC 27064]
          Length = 253

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     ++ V GV   ++C   TL+ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + + +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +         +        +    +  S++    +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRL-------GEPTGVPGARRGAAAAPASWSDQLHAALIGLGYAGREADEA 172

Query: 181 VVSVLKKEKNIADDSQ---IIRLALR 203
           V +V  +        Q   +++ AL+
Sbjct: 173 VAAVTPQAAAAGAAPQVGVLLKAALQ 198


>gi|23010264|ref|ZP_00051013.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 182

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGLVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+GVLS +    L  +I   +   IA+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPEALATAIATGDKGAIARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
           A+R++ ELK KA + + +    ++     +      P    +AISA
Sbjct: 121 AARLVAELKDKAPAFAPIDPALVALTGAVEDRTA--PQPVADAISA 164


>gi|295102071|emb|CBK99616.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium
           prausnitzii L2-6]
          Length = 203

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V+I   GV Y   CP      L  +G+  T++   ++ ++ + L
Sbjct: 1   MIYSLTGKIIKKTLNAVVICCGGVGYYAQCPASVAGALPGVGNEATIYTVMNVTENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+  +  F LL SV GVGA+V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFASEEQQACFELLTSVSGVGAKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K          D+  V    +   +         + LV+LGY Q +A  A
Sbjct: 121 AQRIVLELKDKVAK-GFAAGIDLENVAGAASDTAAAQGAGQAIAA-LVSLGYSQSEAALA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +           +II+LALR+++
Sbjct: 179 VSKIDGTLP----VEEIIKLALRSMA 200


>gi|322392518|ref|ZP_08065978.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           peroris ATCC 700780]
 gi|321144510|gb|EFX39911.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           peroris ATCC 700780]
          Length = 197

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKRLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +        K  A   S       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPA------KTAAPSSSDNQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|295695626|ref|YP_003588864.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912]
 gi|295411228|gb|ADG05720.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912]
          Length = 198

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 107/206 (51%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I G+  D+V++DVQGV Y +Y      + L   G    L  +   R+D   L
Sbjct: 1   MIAFLRGKIAGVNPDHVVMDVQGVGYKVYVAPSLAATL-HPGQEAVLHTQLVWREDGPTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R +F+L+Q+V G+G +VA+GV++      +  +++ ++   +  + G+  K 
Sbjct: 60  YGFADPRERDFFVLVQTVPGIGPKVALGVVAA-GIDRVSRAVVEEDMAFLRGLSGVGRKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ +   L      D +   +E + +  M     + ++AL  LGY + +  + 
Sbjct: 119 ADRLVVDLRDRLSGLVP----DAAGPEREGSGVRPM----EDVVAALSALGYNEREIQSI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + ++ K   +  ++IRLAL  ++
Sbjct: 171 MPVLRREWKEGREPEEMIRLALSQLA 196


>gi|15609730|ref|NP_217109.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           H37Rv]
 gi|15842133|ref|NP_337170.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CDC1551]
 gi|31793777|ref|NP_856270.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis AF2122/97]
 gi|121638478|ref|YP_978702.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662432|ref|YP_001283955.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           H37Ra]
 gi|148823788|ref|YP_001288542.1| Holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis F11]
 gi|167967067|ref|ZP_02549344.1| Holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404543|ref|ZP_03416724.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           02_1987]
 gi|215412369|ref|ZP_03421129.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           94_M4241A]
 gi|215431548|ref|ZP_03429467.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           EAS054]
 gi|215446844|ref|ZP_03433596.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T85]
 gi|218754331|ref|ZP_03533127.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis GM
           1503]
 gi|219558597|ref|ZP_03537673.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T17]
 gi|224990972|ref|YP_002645659.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798325|ref|YP_003031326.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           1435]
 gi|254232711|ref|ZP_04926038.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C]
 gi|254365262|ref|ZP_04981307.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551644|ref|ZP_05142091.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187606|ref|ZP_05765080.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201721|ref|ZP_05769212.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T46]
 gi|260205915|ref|ZP_05773406.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           K85]
 gi|289444132|ref|ZP_06433876.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T46]
 gi|289448243|ref|ZP_06437987.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289553618|ref|ZP_06442828.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           605]
 gi|289570764|ref|ZP_06450991.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T17]
 gi|289575303|ref|ZP_06455530.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           K85]
 gi|289746386|ref|ZP_06505764.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           02_1987]
 gi|289754712|ref|ZP_06514090.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis EAS054]
 gi|289758724|ref|ZP_06518102.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis T85]
 gi|289762766|ref|ZP_06522144.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM
           1503]
 gi|294994298|ref|ZP_06799989.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           210]
 gi|297635203|ref|ZP_06952983.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732196|ref|ZP_06961314.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN
           R506]
 gi|298526068|ref|ZP_07013477.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776867|ref|ZP_07415204.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu001]
 gi|306780631|ref|ZP_07418968.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu002]
 gi|306785395|ref|ZP_07423717.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu003]
 gi|306789995|ref|ZP_07428317.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu004]
 gi|306794076|ref|ZP_07432378.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu005]
 gi|306798490|ref|ZP_07436792.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu006]
 gi|306804353|ref|ZP_07441021.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu008]
 gi|306807607|ref|ZP_07444275.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu007]
 gi|306969809|ref|ZP_07482470.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu009]
 gi|306972982|ref|ZP_07485643.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu010]
 gi|307080692|ref|ZP_07489862.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu011]
 gi|307085281|ref|ZP_07494394.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu012]
 gi|313659531|ref|ZP_07816411.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039572|sp|P66745|RUVA_MYCBO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042201|sp|P66744|RUVA_MYCTU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230567|sp|A1KLU1|RUVA_MYCBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230571|sp|A5U5U3|RUVA_MYCTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767377|sp|C1AF62|RUVA_MYCBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114794219|pdb|2H5X|A Chain A, Ruva From Mycobacterium Tuberculosis
 gi|114794220|pdb|2H5X|B Chain B, Ruva From Mycobacterium Tuberculosis
 gi|114794221|pdb|2H5X|C Chain C, Ruva From Mycobacterium Tuberculosis
 gi|114794222|pdb|2H5X|D Chain D, Ruva From Mycobacterium Tuberculosis
 gi|1478219|emb|CAB01282.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium
           tuberculosis H37Rv]
 gi|13882417|gb|AAK46984.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CDC1551]
 gi|31619371|emb|CAD94809.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium bovis
           AF2122/97]
 gi|121494126|emb|CAL72604.1| Probable holliday junction DNA helicase ruvA [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124601770|gb|EAY60780.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C]
 gi|134150775|gb|EBA42820.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506584|gb|ABQ74393.1| Holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148722315|gb|ABR06940.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           F11]
 gi|224774085|dbj|BAH26891.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319828|gb|ACT24431.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           1435]
 gi|289417051|gb|EFD14291.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T46]
 gi|289421201|gb|EFD18402.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289438250|gb|EFD20743.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           605]
 gi|289539734|gb|EFD44312.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           K85]
 gi|289544518|gb|EFD48166.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T17]
 gi|289686914|gb|EFD54402.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           02_1987]
 gi|289695299|gb|EFD62728.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis EAS054]
 gi|289710272|gb|EFD74288.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM
           1503]
 gi|289714288|gb|EFD78300.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis T85]
 gi|298495862|gb|EFI31156.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214722|gb|EFO74121.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu001]
 gi|308326462|gb|EFP15313.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu002]
 gi|308329914|gb|EFP18765.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu003]
 gi|308333529|gb|EFP22380.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu004]
 gi|308337556|gb|EFP26407.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu005]
 gi|308341223|gb|EFP30074.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu006]
 gi|308346003|gb|EFP34854.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu007]
 gi|308349030|gb|EFP37881.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu008]
 gi|308352726|gb|EFP41577.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu009]
 gi|308357598|gb|EFP46449.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu010]
 gi|308361540|gb|EFP50391.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu011]
 gi|308365151|gb|EFP54002.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu012]
 gi|323718789|gb|EGB27946.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904206|gb|EGE51139.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           W-148]
 gi|328458095|gb|AEB03518.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           4207]
          Length = 196

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L + +   N   + ++PGI  + 
Sbjct: 60  YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K                   A   +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +VL    +    S + R AL  +
Sbjct: 169 TDTVLAANHDATTSSAL-RSALSLL 192


>gi|317969751|ref|ZP_07971141.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0205]
          Length = 225

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 7/213 (3%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G +   +       VL+   GV Y +  P R    LG  G    L V   +R+D
Sbjct: 9   MIGWLQGQLADRWHLNNRFGVLLVCSGVGYEVQMPRRHWDQLGGNGTEAALHVHQVIRED 68

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  F  L +V GVG ++A+G+L +++  ELV +I+  + + + Q PG+
Sbjct: 69  SWTLYGFCARHERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRQLCQAPGV 128

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQ 174
             + A R+  EL+ +         Q     + + +     P+          L  LGY  
Sbjct: 129 GKRTAERLSVELRTRLQQRYGESLQLSQSDDLQVSDSGEGPAAGVREEVQLTLSALGYEA 188

Query: 175 DQATTAVVSVLKKEKNI-ADDSQIIRLALRAIS 206
            +   A+ ++  +   +  D    +R +LR +S
Sbjct: 189 LEINRALRAISPQGPELGEDGDAWLRESLRYLS 221


>gi|219849021|ref|YP_002463454.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM
           9485]
 gi|254766951|sp|B8GCH4|RUVA_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219543280|gb|ACL25018.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM
           9485]
          Length = 195

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 17/209 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I+ +  DY++++  G+ ++IY P  TLS  G +G    L     +R+D + L
Sbjct: 1   MIASIRGVIQSIGNDYLIVETGGIGFLIYAPRSTLSAAGAVGSDIFLHTILIVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +  R  F  L  V GVG ++A+ +LS  T  E+   I   +   +A++PGI  K 
Sbjct: 61  YGFSDNAQRSLFEQLIGVSGVGPKLALSLLSSGTPDEVRSMIAGGDVARLARVPGIGKKT 120

Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+ EL+GK     L++     +S +++E + I             LV+LGY   +A 
Sbjct: 121 AERIVLELRGKIDFRQLAASGSTSVSALDRELSEI-------------LVSLGYSAAEAA 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207
            A+ S+           + +RLALR    
Sbjct: 168 AAIASLPSDAPP--TLEERLRLALRYFGS 194


>gi|329942438|ref|ZP_08291248.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10]
 gi|332287079|ref|YP_004421980.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|325507386|gb|ADZ19024.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|328815348|gb|EGF85336.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10]
 gi|328914313|gb|AEB55146.1| Holliday junction DNA helicase RuvA [Chlamydophila psittaci 6BC]
          Length = 207

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++++ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 1   MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 61  LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q  +          + PS     I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLADLLPLDSQITASWGP------AKPSCMEEGIQALAALGYPKSSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 175 MIAEAMSELPDHASIAEILPIALKK 199


>gi|296170845|ref|ZP_06852406.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894501|gb|EFG74242.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 197

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G + G+  D+ +I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLGVALDHAVIEAAGVGYRVNATPSTLATL-RTGTEARLITAMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L +V GVG R+AM  L+   A  L + +   +   + ++PGI  + 
Sbjct: 60  YGFTDAETRDLFLTLLTVSGVGPRLAMATLAVHDAAALRQVLHDGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  + ++             A + +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKVGAAAAAG----------GASVVNGHAVRGPVVEALVGLGFAVKQAEEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  E++ A  S  +R AL  +
Sbjct: 170 TDKVLATEQD-ATTSGALRAALSLL 193


>gi|296139644|ref|YP_003646887.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM
           20162]
 gi|296027778|gb|ADG78548.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM
           20162]
          Length = 199

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++  GV Y +     T   L + G   +L     +R+D + L
Sbjct: 1   MIASLRGEVRHIGLDHVVVECAGVGYKVLVAPATAGALTR-GSEGSLLTSMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F LLQ+VQGVG R+AM  ++ +   ++  +I   + K +  IPGI  ++
Sbjct: 60  YGFTDSPQQELFHLLQTVQGVGPRLAMAAIAVLEPAQMQSAIASGDIKTLCLIPGIGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K  + S+ V Q  +               A   + AL  LG+   QA  A
Sbjct: 120 AERIHIELKDKVAAPSTSVGQAGTS-------NAPSGGTAQQLLDALEGLGFTPKQAEPA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V + ++   +    S+++R AL+++
Sbjct: 173 VAAAVEAGPDKP-VSELLRDALKSL 196


>gi|306828753|ref|ZP_07461945.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           mitis ATCC 6249]
 gi|304428931|gb|EFM32019.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           mitis ATCC 6249]
          Length = 197

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVAV------QTSAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|307710210|ref|ZP_07646653.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564]
 gi|307618972|gb|EFN98105.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564]
          Length = 197

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI+Y      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLETNGIGYILYV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVSGDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|15900116|ref|NP_344720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           TIGR4]
 gi|111657940|ref|ZP_01408649.1| hypothetical protein SpneT_02000889 [Streptococcus pneumoniae
           TIGR4]
 gi|148987917|ref|ZP_01819380.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|148992760|ref|ZP_01822403.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|149001716|ref|ZP_01826689.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|149005932|ref|ZP_01829661.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|168486048|ref|ZP_02710556.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490355|ref|ZP_02714554.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP195]
 gi|168493877|ref|ZP_02718020.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832637|ref|YP_001693700.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|237649747|ref|ZP_04523999.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI
           1974]
 gi|237821445|ref|ZP_04597290.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307126405|ref|YP_003878436.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           670-6B]
 gi|20455255|sp|Q97SY4|RUVA_STRPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560133|sp|B1I8F7|RUVA_STRPI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|14971646|gb|AAK74360.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           TIGR4]
 gi|147760174|gb|EDK67163.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147762288|gb|EDK69249.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|147926381|gb|EDK77454.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147928486|gb|EDK79501.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|168995139|gb|ACA35751.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183570844|gb|EDT91372.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571324|gb|EDT91852.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP195]
 gi|183576015|gb|EDT96543.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC3059-06]
 gi|306483467|gb|ADM90336.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           670-6B]
 gi|332075851|gb|EGI86318.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA17570]
 gi|332076630|gb|EGI87092.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA17545]
 gi|332077485|gb|EGI87946.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA41301]
 gi|332204192|gb|EGJ18257.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA47901]
          Length = 197

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|307711076|ref|ZP_07647498.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321]
 gi|307617038|gb|EFN96216.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321]
          Length = 197

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G+I     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQINQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +        K +    +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPA------KVEVQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|289550593|ref|YP_003471497.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180125|gb|ADC87370.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 202

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 101/210 (48%), Gaps = 15/210 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++ QG+ Y I  P  +           T++    +R+D   L
Sbjct: 1   MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYNQAVTIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKA-----ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A +I+ +LKGK       S  S+   D+S  +++  +I                 GY + 
Sbjct: 120 ARQIILDLKGKVNYTEASSNDSIHIDDISSTSQKDNYIAEALLALEAL-------GYSKR 172

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + +  V   L+++  +    + +++ L+++
Sbjct: 173 EISK-VEKTLQQQV-VTSVDEAVKIGLQSL 200


>gi|114776334|ref|ZP_01451379.1| putative Holliday junction DNA helicase RuvA [Mariprofundus
           ferrooxydans PV-1]
 gi|114553164|gb|EAU55562.1| putative Holliday junction DNA helicase RuvA [Mariprofundus
           ferrooxydans PV-1]
          Length = 188

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 20/207 (9%)

Query: 1   MIGKIKGNIEGLYE-DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G +  L     VL+   G+ Y +   ++TL  L ++G+   L + T++R+DQI 
Sbjct: 1   MIGWLSGTVRALDPAGSVLLVTGGIGYDVSVSVQTLCKL-RLGEAAELSIHTYVREDQIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +R+ F  L SV G+GAR+A+ ++  ++  EL+ +I   +   IA+ PGI  K
Sbjct: 60  LFGFANSNEREIFRKLTSVSGIGARMALNLMGGMSIEELIGAIEHADDLAIARTPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ EL+GK  S+++     +S             + A    SAL NLGY   Q   
Sbjct: 120 TAQRLILELQGKLGSVAAEGGAAIS-------------NKADEVRSALTNLGYKPAQIDL 166

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  V       AD   + R AL+A+S
Sbjct: 167 ALKHV-----EPADFESMFRAALKAMS 188


>gi|332202100|gb|EGJ16169.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA41317]
          Length = 197

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|313837773|gb|EFS75487.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL037PA2]
 gi|314927345|gb|EFS91176.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL044PA1]
 gi|314972425|gb|EFT16522.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL037PA3]
 gi|328907430|gb|EGG27196.1| holliday junction DNA helicase RuvA [Propionibacterium sp. P08]
          Length = 201

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V++D  GV   + CP  T +   +I    +L     +R+D + L
Sbjct: 1   MISHLSGKVNAAGLTWVVLDNCGVGIKVLCPPATAAS-ARIDQDMSLQTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K 
Sbjct: 60  YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAIANEDDATLCRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ ELK K  + +          +          S+       LV LG+    A  A
Sbjct: 120 AAKMILELKDKMAAFAPRGSSSSGAAH-------VAASWREQVAEGLVGLGWPTKDAEKA 172

Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206
           V  V  L++         ++R ALR+++
Sbjct: 173 VDEVAALREADPTMTIGSLMRAALRSLA 200


>gi|307564556|ref|ZP_07627096.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A]
 gi|307346714|gb|EFN92011.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A]
          Length = 205

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56
           MI  IKG +  +     +++  G+ Y I   + T S +    D   L++     T  R D
Sbjct: 1   MIEYIKGELIEMTPAIAIVEAYGIGYAINISLNTYSDIQGKKD-IKLYIYEAIITGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  + LL +V GVGA  A  +LS  T +EL   I     +++  + GI
Sbjct: 60  SYTLYGFSSKQERSLYKLLITVSGVGANTARMILSSFTPSELCNVISNGEERMLKSVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +L+ K I      +     VN    ++    +    AISAL  LG+    
Sbjct: 120 GLKTAQRIIVDLRDKIIQADIANEL---YVNTSSNNLNIDTAVKDEAISALTMLGFSPVS 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           ++  V+ VL K+ N+    Q+++ AL+ I
Sbjct: 177 SSKVVIEVLTKDANLP-VEQVVKQALKII 204


>gi|225871416|ref|YP_002747363.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi
           4047]
 gi|254767388|sp|C0MAS2|RUVA_STRE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225700820|emb|CAW95524.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi
           4047]
          Length = 198

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ ++  F+ L SV G+G   A+ +++      LV +I   +   + + P I  K 
Sbjct: 60  FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      +K              A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKPPKAKQQGNEQLDEAVEALLALGYKATE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKML 195


>gi|161506974|ref|YP_001576928.1| Holliday junction DNA helicase RuvA [Lactobacillus helveticus DPC
           4571]
 gi|172048184|sp|A8YTI1|RUVA_LACH4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160347963|gb|ABX26637.1| Holliday junction DNA helicase [Lactobacillus helveticus DPC 4571]
          Length = 196

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 10/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +   Y+++DV GV Y +Y P          GD   +F+E  +R   I L
Sbjct: 1   MYEYFEGIVTVITPSYIVVDVNGVGYKVYSPTPFAYQ---KGDKAKIFIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ D+  F+ L SV G+G + A+ +++   A  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK           ++ ++++     ++     +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLRDY-------VARLDRQDEEQGNISPALNDALLALIALGYTQKEVDRI 170

Query: 181 VVSVLKKEKNIAD 193
              + +   + AD
Sbjct: 171 TTKLEEVNADTAD 183


>gi|289168757|ref|YP_003447026.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6]
 gi|303259227|ref|ZP_07345205.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP-BS293]
 gi|303260983|ref|ZP_07346932.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263310|ref|ZP_07349233.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS397]
 gi|303265475|ref|ZP_07351375.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS457]
 gi|303267967|ref|ZP_07353769.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS458]
 gi|288908324|emb|CBJ23166.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6]
 gi|302637820|gb|EFL68306.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639645|gb|EFL70102.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP-BS293]
 gi|302642663|gb|EFL73008.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS458]
 gi|302644915|gb|EFL75162.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS457]
 gi|302647083|gb|EFL77307.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS397]
          Length = 197

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|315658088|ref|ZP_07910960.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           lugdunensis M23590]
 gi|315496417|gb|EFU84740.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           lugdunensis M23590]
          Length = 203

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 101/210 (48%), Gaps = 15/210 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++ QG+ Y I  P  +           T++    +R+D   L
Sbjct: 2   MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYYQEVTIYTSLIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 61  YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 120

Query: 121 ASRIMTELKGKA-----ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A +I+ +LKGK       S  S+   D+S  +++  +I                 GY + 
Sbjct: 121 ARQIILDLKGKVNYTEASSNDSIHIDDVSNTSQKDNYIAEALLALEAL-------GYSKR 173

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + +  V   L+++  +    + +++ L+A+
Sbjct: 174 EISK-VEKTLQQQV-VTSVDEAVKIGLQAL 201


>gi|310816584|ref|YP_003964548.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium
           vulgare Y25]
 gi|308755319|gb|ADO43248.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium
           vulgare Y25]
          Length = 218

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 10/186 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G I     D +L+DV+GV YII+   R ++ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGWLSGRIIEKSGDQILLDVRGVGYIIHVSDRVMASLPGVGEAVALYTDLLVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +++W  LL  VQGVGA+ A+ ++  +    L  ++ L +   IA+  GI  K 
Sbjct: 61  FGFTSRTEKEWHKLLMGVQGVGAKAALAIMGALGGDGLSRALALGDWSSIAKAKGIGPKT 120

Query: 121 ASRIMTELKGKAI----------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
           A R++ ELKGKA           SL +V++ D             + +   +A+SAL NL
Sbjct: 121 AQRVVMELKGKAPTVMAMSGGAESLDAVIEDDGPAPKPAARRARPVSNAQPDALSALGNL 180

Query: 171 GYGQDQ 176
           GY    
Sbjct: 181 GYSPSD 186


>gi|114704960|ref|ZP_01437868.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539745|gb|EAU42865.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi
           HTCC2506]
          Length = 206

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 138/206 (66%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E + ED+V++DV GV Y+ +C  RTL+ L  +G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTVEEIGEDHVVVDVHGVGYVAFCGARTLAGLSGVGEAIVLFIETIVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R WF LLQ+VQGVG++VA+ V+  +++ +L  ++ LQ+  ++A+ PG+  K+
Sbjct: 61  YGFATAAERDWFRLLQTVQGVGSKVALAVIGTLSSGDLANAVALQDKAMVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +A + S    ++   + ++     +  +   +A+SAL NLGY +DQA TA
Sbjct: 121 AQRIVAELKDRAPAFSGAGSEESFGLKRDIGG-GTASAPVADAVSALTNLGYPRDQAATA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + ++     AD +++IRL L+A+S
Sbjct: 180 VATAVRDAGEDADSAKLIRLGLKALS 205


>gi|58336747|ref|YP_193332.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus
           NCFM]
 gi|227903308|ref|ZP_04021113.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796]
 gi|75358012|sp|Q5FLX3|RUVA_LACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58254064|gb|AAV42301.1| helicase Holliday junction [Lactobacillus acidophilus NCFM]
 gi|227868937|gb|EEJ76358.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796]
          Length = 195

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV++DV G+ Y ++ P        K G    +++E  +R   I L
Sbjct: 1   MYEYFEGIISEVTPSYVVVDVNGIGYKVFSPTPFAY---KQGQKAKVYIEQIVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQDQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK     + + +  +           +     +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYVARLDKPENG--------EEISPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              +++ E + AD
Sbjct: 170 TPKLVEIEADTAD 182


>gi|307705927|ref|ZP_07642764.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597]
 gi|307620523|gb|EFN99622.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597]
          Length = 197

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVAV------KASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|15902209|ref|NP_357759.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae R6]
 gi|116515482|ref|YP_815689.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae D39]
 gi|148996605|ref|ZP_01824323.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP11-BS70]
 gi|149011051|ref|ZP_01832356.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP19-BS75]
 gi|168576389|ref|ZP_02722272.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           MLV-016]
 gi|182683163|ref|YP_001834910.1| holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae CGSP14]
 gi|221231090|ref|YP_002510242.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC
           700669]
 gi|303255118|ref|ZP_07341194.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS455]
 gi|307066862|ref|YP_003875828.1| Holliday junction resolvasome DNA-binding subunit [Streptococcus
           pneumoniae AP200]
 gi|32171637|sp|Q8DRE8|RUVA_STRR6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122279425|sp|Q04MQ9|RUVA_STRP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560134|sp|B2IS15|RUVA_STRPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767390|sp|B8ZKD4|RUVA_STRPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15457707|gb|AAK98969.1| Holliday junction DNA helicase [Streptococcus pneumoniae R6]
 gi|116076058|gb|ABJ53778.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae D39]
 gi|147757180|gb|EDK64219.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP11-BS70]
 gi|147764687|gb|EDK71617.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP19-BS75]
 gi|182628497|gb|ACB89445.1| holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae CGSP14]
 gi|183577836|gb|EDT98364.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           MLV-016]
 gi|220673550|emb|CAR68036.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC
           700669]
 gi|301793458|emb|CBW35831.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           INV104]
 gi|301801130|emb|CBW33803.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           INV200]
 gi|302597948|gb|EFL65018.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS455]
 gi|306408399|gb|ADM83826.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           pneumoniae AP200]
          Length = 197

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDGLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|289706228|ref|ZP_06502591.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58]
 gi|289557067|gb|EFD50395.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58]
          Length = 214

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +  D  +I V G+        +TL+ L + G    +     +++D + L
Sbjct: 1   MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLATLHE-GRPGAVQTHLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F +L +  GVG R+A+ +LS      +  ++  ++ K + ++PGI  K+
Sbjct: 60  YGFADRDEREVFEVLITANGVGPRLALAILSVHHPEAVRRAVTEEDEKTLTRVPGIGPKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+       V +  + V+ E A       +  + + A+  LG+ + +A  A
Sbjct: 120 ARKIIVELSGRLAPTGEPVPEAEAEVSDEPAVETV---WHADVVQAMAGLGWSEKEALKA 176

Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203
           V + +     +    D + ++R  LR
Sbjct: 177 VEATVAARPELDEGRDVAALLRATLR 202


>gi|239917790|ref|YP_002957348.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus
           NCTC 2665]
 gi|259495650|sp|C5CCI2|RUVA_MICLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239838997|gb|ACS30794.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus
           NCTC 2665]
          Length = 214

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +  D  +I V G+        +TLS L + G    +     +++D + L
Sbjct: 1   MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHE-GRPGAVQTHLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F +L +  GVG R+A+ +LS      +  ++  ++ K + ++PGI  K+
Sbjct: 60  YGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+       V    +  + E A       +  + + A+  LG+ + +A  A
Sbjct: 120 ARKIIVELSGRLAPTGEPVPGAEAEASDEPAVETV---WHADVVQAMAGLGWSEKEALKA 176

Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203
           V + +     +    D + ++R  LR
Sbjct: 177 VEATVAARPELDEGRDVAALLRATLR 202


>gi|160915302|ref|ZP_02077515.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991]
 gi|158433101|gb|EDP11390.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991]
          Length = 193

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     D ++I+  G+ Y IY          ++     L+   H+R+D I L
Sbjct: 1   MIAFIKGIIHSYSNDSLIIENNGIGYRIYISNP---QSVRLNSEVILYTYQHVREDAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F+ L SV+GVG + A+ +L+     +++E+I   + K++  +PGI  K 
Sbjct: 58  FGFTTMEEHDLFLQLISVKGVGPKTALAMLAVCPVKQMIEAIEHNDVKLLKSLPGIGAKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +   S +Q                 +  ++AI AL  LGY   +  + 
Sbjct: 118 ASQIVLDLKGKLVEEVSEIQ-------------VKENAELVDAIEALKALGYKNAEINS- 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +   L +E + A   Q IR AL  ++
Sbjct: 164 IKKELSEE-SFATSDQYIRKALSILA 188


>gi|307720862|ref|YP_003892002.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978955|gb|ADN08990.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas
           autotrophica DSM 16294]
          Length = 189

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E     YV ++VQG+ Y ++  + T S L K  +  +LF    +R+D   L
Sbjct: 1   MIVGLHGKVEYKEPAYVHVNVQGIVYEVFISLHTFSALPK--EDVSLFTTQIIREDAQLL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +++ F  L  + GVG +VAM + S  T ++    I  ++   + ++PGI  K 
Sbjct: 59  FGFMDMSEKKMFSRLIKINGVGPKVAMAICSTYTPSQFATVINNKDVNGVKKVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL G      + +  D +     QA           A  AL  LG+ +D+ + A
Sbjct: 119 AGRILVELNG----FDAEILGDSATPQASQA--------FNEASEALEALGFKKDKISKA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +         D + +++ AL+ +
Sbjct: 167 LSA-----CEGDDTASLVKGALKQL 186


>gi|220932069|ref|YP_002508977.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168]
 gi|254766964|sp|B8CXG3|RUVA_HALOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219993379|gb|ACL69982.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168]
          Length = 194

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KGN+    E+ V+++  GV Y +  P      L  +G+   LFV T++R+D + L
Sbjct: 1   MIGYLKGNVIWKAENKVILETGGVGYRVLVPSTV--RLKPVGEKLELFVYTYVREDSLDL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L SV G+G R A+ +LS ++  + +E+I+ +   ++ Q+ GI  K 
Sbjct: 59  YGFKTMEERELFETLLSVSGIGPRAAINILSSLSYKKFIEAILTEKVSILKQVSGIGPKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   +S   ++ +      +               AL +LGY + +   A
Sbjct: 119 AKRLILELKGKLKDMSGDFEEPLPDNRNTELS------------DALASLGYSELEIEEA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + +   K        + I+ AL  +  
Sbjct: 167 LSNADIKNNG--SLEENIKKALGYLGS 191


>gi|241889770|ref|ZP_04777068.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC
           10379]
 gi|241863392|gb|EER67776.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC
           10379]
          Length = 193

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +    +++D  G+ Y I         L    +  T+F+   +R+D   L
Sbjct: 1   MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEYQL---NEEKTVFISQQVREDSNIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q+   + + PGI  K 
Sbjct: 58  YGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVTYLTKFPGIGKKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK     + +    + VN          ++  +AI AL  LGY + +    
Sbjct: 118 AQQIILDLQGKVDFSMTNISSAPTAVN----------NYLSDAILALEALGYSKKELAKI 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +     + +   + ++  L+ +
Sbjct: 168 EKKL--SAFDFSGVDEYVKQGLKLL 190


>gi|15674189|ref|NP_268364.1| Holliday junction DNA helicase motor protein [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281492890|ref|YP_003354870.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           lactis KF147]
 gi|13878764|sp|Q9CDL2|RUVA_LACLA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|12725272|gb|AAK06305.1|AE006449_11 DNA helicase RuvA [Lactococcus lactis subsp. lactis Il1403]
 gi|281376542|gb|ADA66028.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           lactis KF147]
          Length = 197

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++IDV G+ Y+I       +    +     ++V   +R+D   L
Sbjct: 1   MFEYLNGKLVKISPTNIVIDVAGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L SV G+G + A+ +++      L+ +I   + K + + PG+  K 
Sbjct: 60  YGFVNEAEKALFLRLISVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK  +  +V    +         +         AI AL  LGY   +    
Sbjct: 120 AMQMVLDLAGKFDATGTVGISLLDAGPAGNLAL-------EEAIEALQALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L +E  +    + I+ AL+ +
Sbjct: 172 IEKKLAQETGLTS-EEYIKSALKLM 195


>gi|283783300|ref|YP_003374054.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05]
 gi|283441415|gb|ADB13881.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05]
          Length = 209

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 10/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LI V GV Y  Y P + LS L + G    ++    + QD + L
Sbjct: 1   MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+ +Q V G+G +VA+ +LS +    L+++I   +   ++  PG+  K 
Sbjct: 60  YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDCLLQAISEGDVTSLSSAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG   SL S +  D S  +  Q++   + S     I  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELKG---SLDSSILADSSN-DSTQSNKQIVDSSVQCVIEGLVSLGWRQVDAQRA 175

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V  V          + AD   ++R+AL ++
Sbjct: 176 VEQVCADNNISTPISDADLPNVLRMALASL 205


>gi|293364377|ref|ZP_06611103.1| crossover junction endoribonuclease subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307702657|ref|ZP_07639609.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC
           35037]
 gi|331267168|ref|YP_004326798.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5]
 gi|291317223|gb|EFE57650.1| crossover junction endoribonuclease subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307623773|gb|EFO02758.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC
           35037]
 gi|326683840|emb|CBZ01458.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5]
          Length = 197

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIILEANGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVAV------QTSAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|268318974|ref|YP_003292630.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           johnsonii FI9785]
 gi|262397349|emb|CAX66363.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           johnsonii FI9785]
          Length = 192

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y+++DV GV Y I CP               ++VE  +R   I L
Sbjct: 1   MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSY---DENQPAAIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+      +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSTAAADLTPSLQDALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    ++ AL  +
Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189


>gi|195978973|ref|YP_002124217.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|229560129|sp|B4U0J5|RUVA_STREM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|195975678|gb|ACG63204.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 198

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ ++  F+ L SV G+G   A+ +++      LV +I   +   + + P I  K 
Sbjct: 60  FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +         +     ++            AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEAPKEESSKLPKAKHQE------NEQLDEAIEALLALGYKATE-LKK 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +     A   Q I+ AL+ +
Sbjct: 173 IRAFFEGTSETA--EQYIKSALKML 195


>gi|212715818|ref|ZP_03323946.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661185|gb|EEB21760.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM
           16992]
          Length = 210

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G ++ +     +I+V GV Y    P   L+ +   G    ++   ++ QD I L
Sbjct: 6   MIGMLHGQVDSIDAASAIIEVGGVGYETRMPSADLASMHA-GQTVKVYTSLNVSQDAITL 64

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 65  YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLARAVADGDATALAKAPGLGKKG 124

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A +I+ ELKG           D+S +        S         +  L++LG+ Q  A  
Sbjct: 125 AQKIILELKG---------SIDLSQIEGASPETRSTEDTGSEQVVEGLMSLGWRQQDAVH 175

Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205
           AV  V +           D  +++RLAL ++
Sbjct: 176 AVQEVCESNHIDIPLGDDDVPRVLRLALASL 206


>gi|227432395|ref|ZP_03914385.1| crossover junction endoribonuclease subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351834|gb|EEJ42070.1| crossover junction endoribonuclease subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 196

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G I  +   Y++I    GV Y +Y          +      ++V+  +R++ I 
Sbjct: 1   MYEYINGLITNITPSYIVIASRSGVGYRLY-SANPYRF--EENVESHVYVQQIVRENDIS 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F  L +V G+G + A+ +L+   A  L+ ++   N   + Q PG+  K
Sbjct: 58  LYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK   L+S      S  N EQ+          +A+ AL+ LGY       
Sbjct: 118 TAQQIVLDLKGKLDELASKTGMVDSSSNPEQSQ------DLDDALEALLALGYTAKDV-K 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  ++ +  +  D    IR AL+ +
Sbjct: 171 AVAQIIGRNSDTTDG--YIRSALKLL 194


>gi|116617732|ref|YP_818103.1| Holliday junction resolvasome, DNA-binding subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122272067|sp|Q03YJ2|RUVA_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116096579|gb|ABJ61730.1| Holliday junction DNA helicase subunit RuvA [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 196

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G I  +   Y++I    GV Y +Y          +      ++V+  +R++ I 
Sbjct: 1   MYEYINGLITNITPSYIVIASRSGVGYRLY-SANPYRF--EENVESHVYVQQIVRENDIS 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F  L +V G+G + A+ +L+   A  L+ ++   N   + Q PG+  K
Sbjct: 58  LYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK   L+S      S  N EQ+          +A+ AL+ LGY       
Sbjct: 118 TAQQIVLDLKGKLDELASKTGMVDSSSNPEQSQ------ALDDALEALLALGYTAKDV-K 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  ++ +  +  D    IR AL+ +
Sbjct: 171 AVAQIIGRNSDTTDG--YIRSALKLL 194


>gi|329767086|ref|ZP_08258614.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341]
 gi|328837811|gb|EGF87436.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341]
          Length = 193

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +    +++D  G+ Y +         L    +   +F+   +R+D   L
Sbjct: 1   MYAYIKGKISEINPTNIVVDNNGIGYEVVVANPYEYQL---NEEKIVFISQQVREDSNIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q+   + + PGI  K 
Sbjct: 58  YGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVNYLTKFPGIGKKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK     + +    + VN          ++  +A+ AL  LGY + + T  
Sbjct: 118 AQQIILDLQGKVDFSMTNISSAPTAVN----------NYLSDAMLALEALGYSKKELTKI 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +     + A   + ++  L+ +
Sbjct: 168 EKKL--SAFDFAGVDEYVKQGLKLL 190


>gi|322375071|ref|ZP_08049585.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300]
 gi|321280571|gb|EFX57610.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300]
          Length = 197

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDALPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|306826018|ref|ZP_07459354.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304431734|gb|EFM34714.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 197

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQENQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAV------QASNENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|237802930|ref|YP_002888124.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804852|ref|YP_002889006.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273152|emb|CAX10065.1| holliday junction DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274164|emb|CAX10958.1| holliday junction DNA helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 200

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R    L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +       + +      +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|229495868|ref|ZP_04389594.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis
           ATCC 35406]
 gi|229317181|gb|EEN83088.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis
           ATCC 35406]
          Length = 204

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I+ L     L+DV GV Y I   +   + L        L++   +R+D   L
Sbjct: 6   MIAYIEGKIDRLSPTNALLDVGGVGYDINITLTDYTALQGKPS-ARLWITEIIREDAHLL 64

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ +  R +F  L SV GVG   A  +LS  T  +L   I      ++  + GI +K 
Sbjct: 65  YGFVREESRAFFEKLCSVSGVGPSTARLILSSYTPNDLASIIGNGAVDLLKNVKGIGLKT 124

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LKGK      +   D+S    E  +   + + +  A  AL  LG+ +     A
Sbjct: 125 AQRIVVDLKGKI----DLSAYDLSEGMPEGGNAPEVAAVSDEAQRALKMLGFPEAAIRKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL  + ++    ++I+ AL+ +
Sbjct: 181 VKAVLGADAHLP-VEEVIKQALKRL 204


>gi|158336024|ref|YP_001517198.1| Holliday junction DNA helicase RuvA [Acaryochloris marina
           MBIC11017]
 gi|189045739|sp|B0CAE7|RUVA_ACAM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158306265|gb|ABW27882.1| holliday junction DNA helicase RuvA [Acaryochloris marina
           MBIC11017]
          Length = 208

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 13/213 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG ++G +  L +       + +DV  V Y +Y P R    L    +   +F    +R+
Sbjct: 1   MIGFLQGYVVSLQQTSTHRTLLTLDVNQVGYDLYVPSRIRQHLPPDQEQMRVFTHLQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           DQ+ LFGF    +R  F  L +V G+G ++A+ ++  +   +LV++I+  N+K++ + PG
Sbjct: 61  DQMVLFGFAVVAERDLFRQLIAVSGIGPQLALALIDTLGLQDLVQAIVNSNTKMLVKTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  EL+ K                K       + S   +    L+ LGY   
Sbjct: 121 VGAKTAERIALELRSKLAEWRD------QAGLKTLPSAGPIDSVQEDVEMTLLALGYTSQ 174

Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206
           +   A+ +V +       +D    IR A+  +S
Sbjct: 175 EVMRALQAVGQNTALAKNSDTEAWIREAIAWLS 207


>gi|255534553|ref|YP_003094924.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium
           3519-10]
 gi|255340749|gb|ACU06862.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium
           3519-10]
          Length = 255

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KGN++ L    V+IDV GV Y +   ++T   L  +G    L ++  +R+D   L
Sbjct: 62  MIYSLKGNVQELNPTSVIIDVNGVGYYVGVSLQTSEKLV-LGKETFLNIQQIIREDAHLL 120

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F LL SV GVG   A+ +LS ++  E+  +I+  NS ++ ++ GI  K 
Sbjct: 121 FGFNTISEKELFNLLISVNGVGPVSALIMLSSLSLQEIASAILSGNSLLLQKVKGIGTKT 180

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ K    +       + VN +             A+SAL  LG  +  +   
Sbjct: 181 AERIIVDLRDKVQKFNISEGNISNFVNNK---------VKDEALSALEVLGIPKKMSEKI 231

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK   ++     +++  L+ I
Sbjct: 232 ADRFLKTNADL-SVEDLVKQILKNI 255


>gi|299535650|ref|ZP_07048971.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           fusiformis ZC1]
 gi|298728850|gb|EFI69404.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           fusiformis ZC1]
          Length = 206

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 89/196 (45%), Gaps = 3/196 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +  ++++++ QG+ + +  P         +     ++V  H+R+D   L
Sbjct: 1   MYDYLKGQITRITPEFIVLEQQGIGWQLNTPNPFAFRTSALEQ--QIYVHLHVREDAQVL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R+ F  L  V G+G + A+ +L+     +++ +I  ++   + + PG+  K 
Sbjct: 59  YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  SL   ++   +        + +       A+ AL+ LGY + +    
Sbjct: 119 ARQMILDLKGKLGSLLDTLELPSAEDELPLFGVNAYKHELEEALLALMALGYSEKELEK- 177

Query: 181 VVSVLKKEKNIADDSQ 196
           +   L+    +     
Sbjct: 178 IKPQLEDNDKLETTDA 193


>gi|297195496|ref|ZP_06912894.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722111|gb|EDY66019.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 202

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 13/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TLS L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPNTLSGL-RIGQEAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +            + V++         S+     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGEPLGTGPAVGAPVSR---------SWRDQLHAALIGLGYATREADEA 170

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + + +    +   ++R AL+++S
Sbjct: 171 VAAVAPQAEAMGAAPEVGPLLRAALQSLS 199


>gi|227549154|ref|ZP_03979203.1| Holliday junction DNA helicase motor protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078774|gb|EEI16737.1| Holliday junction DNA helicase motor protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 206

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 8/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+  GV Y +     TL+ L + G+   +     ++ D + L
Sbjct: 1   MIDSLHGEVLSIGLDHAVIECAGVGYRLLAGPPTLARLTR-GETTRVLTSMVVKDDGVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ---IPGIS 117
           +GF  D  R  F  LQ+V G+G ++A+  LS     EL   I   ++  I +   IPG+ 
Sbjct: 60  YGFADDGARTMFHRLQTVSGLGPKLALACLSVFEPAELAGLITAGDAAAIKRIQTIPGVG 119

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K+A R+  ELK K   L +  +   +      A        A   + AL+ LG+    A
Sbjct: 120 KKMAERMALELKDKIDGLYATSEPGAAPSAPVTAGT---SLAAEQVVEALIGLGFADKVA 176

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207
              V +++++       S+++R AL  +  
Sbjct: 177 RGVVDTLIQERPGD-SSSELLRAALTQLGS 205


>gi|317121686|ref|YP_004101689.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis
           DSM 12885]
 gi|315591666|gb|ADU50962.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis
           DSM 12885]
          Length = 223

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 7/181 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  D V IDV GV + +    +T   L   G+   L     +R+DQ  L
Sbjct: 1   MIAFLRGELVALAGDEVWIDVGGVGFRVAVSRQTQRRLPPAGEPVRLLTRLVVREDQWSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V GVG RVA+ VLS ++  EL  +++LQ+  ++ ++PG+  K+
Sbjct: 61  YGFATADEQAAFDALLTVSGVGPRVALAVLSVLSPEELRRAVVLQDPALLTRVPGVGPKL 120

Query: 121 ASRIMTELKGKAISL-------SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++TEL+ +            +V     +             S   +A++AL +LGY 
Sbjct: 121 ARRLLTELRDRLGEPLAEGAAAGAVAPAGGAASTPGGLPGGVATSPREDALAALESLGYS 180

Query: 174 Q 174
           +
Sbjct: 181 R 181


>gi|254441542|ref|ZP_05055035.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           307]
 gi|198251620|gb|EDY75935.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           307]
          Length = 231

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 24/229 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +E    D+VLIDV+GV YI++   R ++ L ++G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRLEYRATDHVLIDVKGVGYIVFVSDRVMATLPRVGEAVALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  SI + +   +A   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWATVATAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-----------------------VNKEQAHICSMP 157
           A +++ +LK KA S+ ++                              V++         
Sbjct: 121 AKKVILDLKDKAHSVMAMAGTAAGAASAAGGVASVSADAETDADADALVDRYDGPAAGNG 180

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    A+SAL NLGYG   A  A V+    E + AD + +IR AL+ ++
Sbjct: 181 AAQSEALSALSNLGYGPSDAAGA-VAQAAVENDGADTAVLIRAALKLLA 228


>gi|166154716|ref|YP_001654834.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           434/Bu]
 gi|166155591|ref|YP_001653846.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335990|ref|ZP_07224234.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis L2tet1]
 gi|229560018|sp|B0B875|RUVA_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560020|sp|B0BCE0|RUVA_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|165930704|emb|CAP04201.1| holliday junction DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|165931579|emb|CAP07155.1| holliday junction DNA helicase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 200

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  +   YV+I+  G+ Y I    R L  L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHIDGSYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +       + +      +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|126654019|ref|ZP_01725852.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905]
 gi|126589493|gb|EAZ83637.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905]
          Length = 206

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 89/196 (45%), Gaps = 3/196 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +  +Y++++ QG+ + +  P         +     ++V  H+R+D   L
Sbjct: 1   MYDYLKGLITRITPEYIVLEQQGIGWQLNTPNPFAFRTSALEQ--QIYVHLHVREDAQML 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R+ F  L  V G+G + A+ +L+     +++ +I  ++   + + PG+  K 
Sbjct: 59  YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  SL   ++   +        + +       AI AL+ LGY + +    
Sbjct: 119 ARQMILDLKGKLGSLLETIELPSTEDELPLFGVNAYKHELEEAILALMALGYSEKELEK- 177

Query: 181 VVSVLKKEKNIADDSQ 196
           +   L+    +     
Sbjct: 178 IRPQLEDNDKLETTDA 193


>gi|42523918|ref|NP_969298.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus
           HD100]
 gi|81616890|sp|Q6MKB7|RUVA_BDEBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|39576125|emb|CAE80291.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus
           HD100]
          Length = 196

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           MIG ++G I  +  D  LIDV GV Y I+    TL  L  + G+   +++ TH+R+D ++
Sbjct: 1   MIGYLRGKIIEVMNDSALIDVSGVGYEIHASSNTLGDLQALLGNDIIVWIHTHVREDALQ 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    ++  F+ L  V GVG ++A+ +LS     ++ E I   N+K ++ +P +  K
Sbjct: 61  LFGFHDKEEKNLFLSLLKVNGVGPKMALSILSGGRPAQIHEMIEAGNAKALSGLPKVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LKGK +S+            +      +         SAL+NLGY     + 
Sbjct: 121 TAEQIILTLKGKLVSIE-----------EGGVVAKAKSVAHTQITSALLNLGYK----SQ 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            V   +            IR   + +S
Sbjct: 166 LVDQFVSSLPADIAVEDGIRKGFQTLS 192


>gi|225860211|ref|YP_002741720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230115|ref|ZP_06963796.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255022|ref|ZP_06978608.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501981|ref|YP_003723921.1| crossover junction endoribonuclease subunit A [Streptococcus
           pneumoniae TCH8431/19A]
 gi|254767394|sp|C1CP48|RUVA_STRZT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225726584|gb|ACO22435.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237576|gb|ADI68707.1| crossover junction endoribonuclease subunit A [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327390587|gb|EGE88927.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA04375]
          Length = 197

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|148983581|ref|ZP_01816900.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|149017853|ref|ZP_01834312.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483820|ref|ZP_02708772.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1873-00]
 gi|168492137|ref|ZP_02716280.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC0288-04]
 gi|194397075|ref|YP_002036885.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54]
 gi|225853792|ref|YP_002735304.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA]
 gi|225855950|ref|YP_002737461.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           P1031]
 gi|225858040|ref|YP_002739550.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           70585]
 gi|226698742|sp|B5E6D0|RUVA_STRP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767389|sp|C1CAI9|RUVA_STRP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767392|sp|C1CBY3|RUVA_STRZJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767393|sp|C1CI73|RUVA_STRZP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147923728|gb|EDK74840.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147931417|gb|EDK82395.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|172042891|gb|EDT50937.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1873-00]
 gi|183573620|gb|EDT94148.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC0288-04]
 gi|194356742|gb|ACF55190.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54]
 gi|225721170|gb|ACO17024.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           70585]
 gi|225722475|gb|ACO18328.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA]
 gi|225726352|gb|ACO22204.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           P1031]
 gi|301799335|emb|CBW31870.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           OXC141]
          Length = 197

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|242280346|ref|YP_002992475.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM
           2638]
 gi|259495638|sp|C6C065|RUVA_DESAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|242123240|gb|ACS80936.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM
           2638]
          Length = 203

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +    +   +I    GV Y ++  +  +S L + G   T +V + +R+D   
Sbjct: 1   MIAYIHGKLLEATDKSCIILTPGGVGYELFLTLSAISTLPESGSDVTFYVHSVIREDAFD 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    DR+ F  L SV  +G + A+ +LS+    +L + +  ++ K ++ +PGI  K
Sbjct: 61  LYGFPCFDDREVFRTLISVDRLGPKKALAILSQFGPKDLQDLVFREDVKTLSIVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LK K  +L S      + V      +    S  ++A+S L NLGYG D+   
Sbjct: 121 SARQILWSLKDKMETLKS------ATVRSGACPVEGDRSEFLDALSGLRNLGYGDDEVRD 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +  +E ++ D    IR+AL+ IS
Sbjct: 175 FLKDIFDEEPDL-DAGGAIRVALKKIS 200


>gi|15835402|ref|NP_297161.1| Holliday junction DNA helicase motor protein [Chlamydia muridarum
           Nigg]
 gi|270285581|ref|ZP_06194975.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg]
 gi|270289591|ref|ZP_06195893.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Weiss]
 gi|301336977|ref|ZP_07225179.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum MopnTet14]
 gi|13431873|sp|Q9PJP0|RUVA_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7190816|gb|AAF39591.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg]
          Length = 200

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           M   IKG +    E YV+I+  G+ Y I    R L  L ++      ++V + +R+ +  
Sbjct: 1   MYEYIKGKLTHTDEAYVVIESFGIGYSIMLSERFLVDLRELMHQEVLIYVHSVIRETEHS 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLAILNMFPLQELCSVARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +  ++    +       S  +     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPALMPLYLEEPVVAS------SSTTTSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEDASVAELLPVALRK 199


>gi|169831522|ref|YP_001717504.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|229560028|sp|B1I477|RUVA_DESAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169638366|gb|ACA59872.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 202

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 106/207 (51%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  +Y + V+++V G+ Y +  P    + L + G+   L+    +++  + +
Sbjct: 1   MIDFLKGRLVSVYPEAVVVEVGGIGYRVQVPPSLAASLPEPGETVFLYTYLSVKETALEM 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+LDR  F+LL  V G+G R A+ V+ R+    L  +I+ +++ ++  +PGI +K 
Sbjct: 61  FGFSSELDRTAFLLLLGVAGIGPRTALAVVGRLGTRRLWAAILREDTGILTTVPGIGVKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM EL+ +       V  ++   +               A++AL++LGY   +A  A
Sbjct: 121 ARRIMVELRDRLEKQQVAVSAELPASDGVP---VLAGRAENEALAALISLGYTPREAREA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +  +  ++    D + ++  ALR +  
Sbjct: 178 LNRLPDRK---LDAAGLVHAALRIMGS 201


>gi|309789628|ref|ZP_07684209.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6]
 gi|308228364|gb|EFO82011.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6]
          Length = 198

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+++I+  GV +++Y P   L   G + +   L+    +R+D + L
Sbjct: 1   MIASLRGTLIHIGSDHLVIETGGVGWLVYAPRSVLGACGALNETIFLYTHMIVREDALLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R  F  L SV GVG +V + +LS  +  ++   +   N+  +A++PGI  K 
Sbjct: 61  YGFQTLEQRALFESLLSVSGVGPKVGLSLLSAGSPDDIRLMVAQNNTTALARVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179
           A R++ ELKGK          D+  +      + + PS         LV+LGY   +A+ 
Sbjct: 121 AERLVLELKGKL---------DLKGLPTAAGGVAAAPSALNAELAELLVSLGYSSAEASA 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AV S+        D    +RLALR    
Sbjct: 172 AVASLPADAPE--DLEVRLRLALRYFGS 197


>gi|260583653|ref|ZP_05851401.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC
           700633]
 gi|260158279|gb|EEW93347.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC
           700633]
          Length = 198

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y++++  G+ Y I           K+ +   + ++  +R+D I L
Sbjct: 1   MYEYLKGELVAIQPTYIVVENHGIGYQIMF-ANPYRIQLKLNEVIRVELQQIVREDSITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLSD +++ F  L SV G+G + A+ +L+       ++++   N   + + PG+  K 
Sbjct: 60  YGFLSDEEKELFQKLISVSGIGPKSAVSILANDDVNGFIQAVESGNITYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK  ++       +  V        +       A  AL+ LGY   + T  
Sbjct: 120 AQQIVLDLKGKFTNIV------VEEVATPVVETATGIKQLEEAREALLGLGYSAKEITKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +           + + +A + +
Sbjct: 174 WKELEAAAPQ--TTQEALSIAFKLL 196


>gi|227825064|ref|ZP_03989896.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21]
 gi|226905563|gb|EEH91481.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21]
          Length = 201

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG ++ +  +Y  ++ QGV Y IY     L  +  + D   ++    +R+D + L
Sbjct: 1   MIGFIKGRVDTIGSNYAFVETQGVGYRIYMNTSDLGRMV-LDDKVKVYTYLAVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS      F  L +V G+G +VA G+LS     + + +I  ++ K + ++PGI  K 
Sbjct: 60  YGFLSQEAYGLFTKLITVSGIGPKVAQGILSASKVDDFLLAIKNRDVKFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK        + + +   +  E        S     + AL +LGY Q++ +  
Sbjct: 120 AERMLLELKDLTGPEGPLPESNGGFLAPE-----GPASALTETMEALASLGYTQNEISGV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +  K         +++ AL+ ++
Sbjct: 175 MNRI--KVTADMSAEDLLKKALQVMA 198


>gi|162146622|ref|YP_001601081.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543386|ref|YP_002275615.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189045754|sp|A9HAV7|RUVA_GLUDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161785197|emb|CAP54743.1| putative holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531063|gb|ACI51000.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 200

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  ++DV GV Y+++   RTLS L +  D   + VET +R+D   L
Sbjct: 1   MIAHLTGLVGQMESDRCVVDVGGVGYLVHASTRTLSALPRPPDVTRVLVETVVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R WF LL +VQGVGA+VA+ +LS ++  +L   I   +   + ++ G+  ++
Sbjct: 61  YGFAEAAERDWFRLLTTVQGVGAKVALAILSALSPGDLAGVIAAADKASLTRVSGVGARL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ KA  + +     ++                           + + +A   
Sbjct: 121 AERILTELRDKAGRMPAGPGVTIAAPPASGGVEADALLALAGLG-------FRRAEAQPV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +L +    AD   +IR +LR ++
Sbjct: 174 VGRILARLDGKADLDVVIRESLRELA 199


>gi|83950117|ref|ZP_00958850.1| Holliday junction DNA helicase motor protein [Roseovarius
           nubinhibens ISM]
 gi|83838016|gb|EAP77312.1| Holliday junction DNA helicase motor protein [Roseovarius
           nubinhibens ISM]
          Length = 216

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 17/213 (7%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           +   ED+VL+DV+GV Y++YC  RTL  L  +G+   L+ +  +R+D ++LFGF S +++
Sbjct: 2   DYRAEDHVLLDVRGVGYLVYCSDRTLQALPPVGEHTALYTDLLVREDLLQLFGFTSLVEK 61

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           +W  LL  VQG+GA+ ++ +L  +    +  +I L +   +    G+  K A R++ ELK
Sbjct: 62  EWHRLLMGVQGIGAKASLAILGTLGVEGVSRAINLGDWNALKAAKGVGPKTAQRVVNELK 121

Query: 130 GKAISLSSVVQQDMSCVNKEQAH----------------ICSMPSFAINAISALVNLGYG 173
            KA  + ++     +                          +  S    A+SAL NLGY 
Sbjct: 122 DKAPQVMAMGAGAATAPMPAPDDQDEVIETPRAAAAPTPARASQSAQAEALSALSNLGYA 181

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +A +AV          A+   +IR AL+ ++
Sbjct: 182 PGEAASAVAQAADTAPE-AETPALIRAALKLLA 213


>gi|308187172|ref|YP_003931303.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans
           C9-1]
 gi|308057682|gb|ADO09854.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans
           C9-1]
          Length = 167

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 4/168 (2%)

Query: 38  LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97
           + ++     +F    +R+D   LFGF S  +R  F  L  V GVG ++A+ +LS ++A +
Sbjct: 1   MPELQHEAVIFTHFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQ 60

Query: 98  LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSM 156
            V ++  +    + ++PG+  K A R++ E+K +   +   +   D +      +     
Sbjct: 61  FVTAVEKEEIASLVKLPGVGKKTAERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAEPET 120

Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                 A++ALV+LGY   +A+  +  V + +   AD   +IR ALRA
Sbjct: 121 NDAESEAVAALVSLGYKPQEASRMISKVGRPD---ADCETLIREALRA 165


>gi|313884201|ref|ZP_07817967.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620648|gb|EFR32071.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 201

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +  ++  Y+++   G+ Y IY      +    + +   +++E  +R+D + L
Sbjct: 1   MYEYIQGILSQIHPTYLVVTASGLAYKIY-SPNAYAWNRHLNEEVQVYLELVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL  V  +G + A+ +L+    T LV++I  QN   + + PG+  K 
Sbjct: 60  YGFKDMQEKELFNLLNRVSNIGPKSALSILALNDHTGLVQAIESQNVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK   L   V  D + +   Q    S  +       AL  LGY Q +   A
Sbjct: 120 AQQMILDLQGK---LGDFVANDGAELAPSQQASSSNQAQFDEVAEALAGLGYSQREI-KA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   +   ++ A   + +  A + +
Sbjct: 176 IAKPMA-LQSFASTQEALSFAFKLL 199


>gi|163846991|ref|YP_001635035.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524813|ref|YP_002569284.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl]
 gi|189045746|sp|A9WA87|RUVA_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766952|sp|B9LCT8|RUVA_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163668280|gb|ABY34646.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448692|gb|ACM52958.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl]
          Length = 195

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 17/209 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I+ +  D+++++  GV  +IY P  TL+ +G+IG    L+    +R+D + L
Sbjct: 1   MIASIRGIIQSIGIDHLIVETGGVGLLIYAPRSTLNAVGQIGSETFLYTLLIVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++A+ +LS  +  E+ +SI   +   +A++PGI  K 
Sbjct: 61  YGFSDPAQRNLFEQLIGVSGVGPKIALNLLSSGSPDEIQKSIAGGDIARLARVPGIGKKT 120

Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+ EL+GK     LS     ++S +++E   I             L++LGY   +A 
Sbjct: 121 AERIVLELRGKIDLRQLSGTTPGNVSTLDRELTDI-------------LISLGYSATEAA 167

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207
            A+ ++           + +RLALR    
Sbjct: 168 AAIAALPGDAPP--TLEERLRLALRYFGS 194


>gi|237785621|ref|YP_002906326.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|259495637|sp|C4LIX8|RUVA_CORK4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|237758533|gb|ACR17783.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 207

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  +YV+I+  GV Y        L  L + G+   + V  ++R D I L
Sbjct: 1   MIDSLHGEVLHVGLNYVVIECSGVGYRATASPSLLGTL-RKGEDARILVTMNVRDDGIDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F SD  RQ F +L+ V GVG   AM + S     E    I  ++   +  + GI  + 
Sbjct: 60  YAFESDEARQMFAMLRKVSGVGPTSAMAICSIFKPDEFARIITDEDDAELRNVKGIGKRT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ +LK K     S              +              ALV LG+ + QA  
Sbjct: 120 AERIIVDLKSKVAVFDSGDSASEPQSGVGGNSEAEVDSGVVGTVTQALVELGFPEKQAEK 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
              S   +  +    S+I++ ALR++S 
Sbjct: 180 TATSAAAEGGS---VSEILKRALRSMSS 204


>gi|317495143|ref|ZP_07953513.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424]
 gi|316914565|gb|EFV36041.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424]
          Length = 192

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +    ++ID  G+ Y I         L    +   +++   +R+D   L
Sbjct: 1   MYAYIKGKISEINPTNIVIDNNGIGYEITVANPYEYQL---NEEKQIYISQQVREDSNTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q+   + + PGI  K 
Sbjct: 58  YGFLTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDVNYLTKFPGIGKKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK          D +    +   + ++  +  +A+ AL  LGY   +    
Sbjct: 118 AQQIILDLQGKI---------DFNTAANKTESLANL--YIKDALLALEALGYSTKELAKI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K E +  DD   ++  L+ +
Sbjct: 167 ESRLAKFEFSAVDD--YVKQGLKLL 189


>gi|322390453|ref|ZP_08063973.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 903]
 gi|321142852|gb|EFX38310.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 903]
          Length = 197

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVQVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK                + +A +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|296875591|ref|ZP_06899662.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433388|gb|EFH19164.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 15912]
          Length = 197

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVQVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK                + +A +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +  +D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|229824009|ref|ZP_04450078.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271]
 gi|229786363|gb|EEP22477.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271]
          Length = 197

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +  +   +++I   GV Y + C        G++       VE  +R+D + L
Sbjct: 3   MYEFIQGELVQIQPLHLVISANGVGYRLLC-ANPYRWQGELHQQVLCPVELVVREDAMTL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F  L  V G+G + A+ +L+      L+++I   +S  + + PG+  K 
Sbjct: 62  YGFRDQQEKQLFNTLLKVSGIGPKSALSILALDDHVGLIQAIDSGDSTYLTKFPGVGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L G           D     + QA           A+ AL  LGY   +    
Sbjct: 122 AQQMILDLSGNL---------DFQAHAQTQASAPVSQQHLEEALEALAGLGYSAKEIKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  +E  +    +++  A + +
Sbjct: 173 EKPL--QEAGLNSTQEMLSAAFKLL 195


>gi|312866920|ref|ZP_07727133.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis
           F0405]
 gi|311097703|gb|EFQ55934.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis
           F0405]
          Length = 197

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVHVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK                + +A +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +  +D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|254451002|ref|ZP_05064439.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           238]
 gi|198265408|gb|EDY89678.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           238]
          Length = 231

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 24/229 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +E    D+VLIDV+GV YI++   R ++ L ++G+  +L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRLEYRAIDHVLIDVKGVGYIVFVSDRVMATLPRVGEGVSLYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  SI + +   +A   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWAAVATAKGVGPKT 120

Query: 121 ASRIMTELKGKAISL-----------------------SSVVQQDMSCVNKEQAHICSMP 157
           A +++ +LK KA  +                       +       + V++         
Sbjct: 121 AKKVILDLKDKAHGVMAMAGTAAGAAPAAGGGASVSADAETDTDMHAVVDRYDGTAAGNG 180

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +     +SAL NLGYG   A  A V+    E + AD + +IR AL+ ++
Sbjct: 181 AAQSETLSALSNLGYGPSDAAGA-VAQAAVENDGADTATLIRAALKLLA 228


>gi|239932397|ref|ZP_04689350.1| Holliday junction DNA helicase RuvA [Streptomyces ghanaensis ATCC
           14672]
 gi|291440764|ref|ZP_06580154.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291343659|gb|EFE70615.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 201

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RVGRPAKLHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177
           A +++ ELK +              V    A   +   +     +AL+ LGY      +A
Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAAGAPAAAGWRDQLHAALIGLGYATREADEA 169

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV    +          +++ AL+ ++
Sbjct: 170 VAAVAPQAEAAGGTPRVGPLLKAALQTLN 198


>gi|117928551|ref|YP_873102.1| Holliday junction DNA helicase subunit RuvA [Acidothermus
           cellulolyticus 11B]
 gi|166229623|sp|A0LUK6|RUVA_ACIC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117649014|gb|ABK53116.1| Holliday junction DNA helicase subunit RuvA [Acidothermus
           cellulolyticus 11B]
          Length = 196

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 18/208 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D V+++V G    +     T++   ++G+         +R+D + L
Sbjct: 1   MISFVSGRVAAVTPDSVIVEVGGFGVQLLATPATIAR-ARVGERARFATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F LLQ+  GVG R+A+ +L   + T L  ++  ++ K +A +PGI  K 
Sbjct: 60  YGFADDDERTVFELLQTASGVGPRLALAMLGVHSPTALRAAVATEDVKALALVPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-LVNLGYGQDQATT 179
           A RI+ ELK +  + S+   +  S                 +A+ A L+NLGY   QA  
Sbjct: 120 AQRIILELKDRLGTPSTAAAESTSG--------------WRDAVHAGLLNLGYTARQADE 165

Query: 180 AVVSVLKKEKNIA--DDSQIIRLALRAI 205
           A+ ++  +  + A  D +  +RLAL  +
Sbjct: 166 AIAAIAGELDDSAAVDTATALRLALATL 193


>gi|332300396|ref|YP_004442317.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177459|gb|AEE13149.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 202

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58
           MI  ++G I+ L      +D  GV Y +   + T   L   +      L++   MRQ ++
Sbjct: 1   MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60

Query: 59  -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  ++  F  L +V GVG   A  +LS +   EL E I   + K +  + GI 
Sbjct: 61  CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LKGK     +      + +    A        A  AISAL  LG+ +   
Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEVNV 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  ++  + +     Q+I+ AL  +
Sbjct: 176 RKVVKQIMSVKPDTP-VEQVIKQALAKL 202


>gi|76789238|ref|YP_328324.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           A/HAR-13]
 gi|90134759|sp|Q3KLJ6|RUVA_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76167768|gb|AAX50776.1| RuvA [Chlamydia trachomatis A/HAR-13]
          Length = 200

 Score =  197 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R    L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +++ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAEKECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +       + +      +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|88808434|ref|ZP_01123944.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           7805]
 gi|88787422|gb|EAR18579.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           7805]
          Length = 215

 Score =  197 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 8/213 (3%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +E      V+I   GV Y +    R  S     G  CT +V    R+D
Sbjct: 1   MIGWLQGERIQSWEQGGRRGVVIACGGVGYEVQLTSRDQSRQMD-GTSCTFWVHQVQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF    +R  F  L  V GVG ++A+ +L      ELV +I+  + K + Q  G+
Sbjct: 60  GSTLYGFCEQQERDLFRTLVGVNGVGPQMALALLDCCRVEELVAAIVDGDLKRLTQAQGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQD 175
             + A RI  EL+ +  + + + +  +S V++       +   ++  +   L  LGY   
Sbjct: 120 GKRTAERIAVELRDRLGAWAPLQEPSLSLVDRSDVKEIPLGETSLRELQITLETLGYEDL 179

Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206
           +   A+ +V          D    +R +L+ +S
Sbjct: 180 EIRRAMRAVATGTDVPAEDDGDAWLRASLKWLS 212


>gi|228471297|ref|ZP_04056103.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3]
 gi|228306939|gb|EEK16037.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3]
          Length = 202

 Score =  197 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58
           MI  ++G I+ L      +D  GV Y +   + T   L   +      L++   MRQ ++
Sbjct: 1   MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60

Query: 59  -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  ++  F  L +V GVG   A  +LS +   EL E I   + K +  + GI 
Sbjct: 61  CDLYGFYTREEQALFAKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LKGK     +      + +    A        A  AISAL  LG+ +   
Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEANV 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  ++  + +     Q+I+ AL  +
Sbjct: 176 RKVVKQIMTVKPDTP-VEQVIKQALAQL 202


>gi|227504981|ref|ZP_03935030.1| Holliday junction DNA helicase motor protein [Corynebacterium
           striatum ATCC 6940]
 gi|227198431|gb|EEI78479.1| Holliday junction DNA helicase motor protein [Corynebacterium
           striatum ATCC 6940]
          Length = 194

 Score =  197 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
             +  D+ +I+  GV Y       TL  L + GD  T+     +++D + L+GF +D DR
Sbjct: 2   LSISLDHAVIECAGVGYKFLATPVTLGTL-RRGDEATVLTSMVVKEDSMTLYGFSNDEDR 60

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F +LQ+V G+G ++A+  LS +  ++L ++I   ++K +  IPG+  ++A R+  EL+
Sbjct: 61  DMFHVLQTVSGLGPKLALAALSVMGPSQLAQAISSGDAKTLQTIPGVGKRMAERLALELR 120

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
            K  + +   Q       +E +   +        + ALV LG+    A   V  ++ +E 
Sbjct: 121 DKVSAFAPQAQP-----GQEASAAVAHGPVVDQVVEALVGLGFTDKAARPVVEGIVAEE- 174

Query: 190 NIADDSQIIRLALRAI 205
           + A+ + ++R AL  +
Sbjct: 175 SAAETAVVLRGALAQL 190


>gi|313886562|ref|ZP_07820276.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923972|gb|EFR34767.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 202

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHMRQDQI 58
           MI  ++G I+ L      +D  GV Y +   + T   L  +       L++   MRQ ++
Sbjct: 1   MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLEREAPVRLWITEVMRQGEV 60

Query: 59  -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  ++  F  L +V GVG   A  +LS +   EL E I   + K +  + GI 
Sbjct: 61  CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LKGK     +      + +    A        A  AISAL  LG+ +   
Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEVNV 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  ++  + +     Q+I+ AL  +
Sbjct: 176 RKVVKQIMSVKPDTP-VEQVIKQALAKL 202


>gi|306834544|ref|ZP_07467657.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           bovis ATCC 700338]
 gi|304423346|gb|EFM26499.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           bovis ATCC 700338]
          Length = 197

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YI+       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVIEAGGLGYIVNV-ANPYSFSDLVNQEVQIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +S           K      +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVDVSVEN-------GKASQTKTATNEQLEEAMEALLALGYKAAE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +     A   Q I+ +L+ +
Sbjct: 172 IRKFFEGTNETA--EQYIKSSLKML 194


>gi|310658621|ref|YP_003936342.1| FuvABC resolvasome regulatory subunit [Clostridium sticklandii DSM
           519]
 gi|308825399|emb|CBH21437.1| component of RuvABC resolvasome, regulatory subunit [Clostridium
           sticklandii]
          Length = 199

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG +E    D ++++  G+ Y I   + T+  +  IG+   +  +  +R+D I+L
Sbjct: 1   MLNYIKGILEEKAVDKIVVENNGIGYEILTSLNTIEEIN-IGEKIKIHTKLLVREDDIQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +   F LL SV  +G ++A+  LS   + ++   I+  +   + +IPG+  K 
Sbjct: 60  VGFTSKEELSIFNLLTSVSKIGPKLALSSLSVYKSEKIKLMIVESDINSLVKIPGMGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K      V   D+   ++ Q +I         AI ALV+LG+ + ++   
Sbjct: 120 AERVILELKDKI---GVVYFTDLESNSEPQLNIG------HQAIEALVSLGFSKKESEDV 170

Query: 181 VVSVLKKEKNIAD---DSQIIRLAL 202
           V  ++K   N  +      +I+ AL
Sbjct: 171 VKKIIKSVGNDTESLHVETLIKNAL 195


>gi|212696229|ref|ZP_03304357.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676858|gb|EEB36465.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 197

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ + E+  +I+   + Y+I     T+  L +I +   +F + ++R+D I L
Sbjct: 1   MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F LL SV  +G + A+ VLS +   ++  +I+  +   + +  GI  K 
Sbjct: 60  FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKFAIVNNDIDTLTKAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++      +S     +    +       A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMAINDDISIS-----EDSFTTSNKEIDVAREALINLGYQRNSIDKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++   + ++    +II+ AL+ +
Sbjct: 175 LTTLKDSDLSL---EEIIKEALKKM 196


>gi|332203341|gb|EGJ17408.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA47368]
          Length = 197

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVAV------KASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|295425862|ref|ZP_06818542.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064465|gb|EFG55393.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           amylolyticus DSM 11664]
          Length = 197

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 11/194 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59
           M   + G I  +   Y+++DV GV Y ++ P          G    ++VE +   +    
Sbjct: 1   MFEYLDGTIAEISPSYIVVDVNGVGYKVFSPTPFAYHQ---GQKAKVYVEQNFSDNNGFT 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF     +  F+ L SV G+G + A+ +++   +  L E+I     K + + PG+  K
Sbjct: 58  LYGFQDKNAKGLFLKLLSVSGIGPKSALAIMAAEDSDSLAEAIEQGEVKYLTRFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            AS+I+ +LKGK           ++ +++  A    +     +A+ AL+ LGY Q +   
Sbjct: 118 TASQIVLDLKGKLGDY-------VNRLDRTVADNEEISPELHDALLALIALGYTQKEVNR 170

Query: 180 AVVSVLKKEKNIAD 193
               + K + + AD
Sbjct: 171 ITPKLEKIDTDSAD 184


>gi|326407801|gb|ADZ64872.1| holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 197

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++IDV G+ Y+I       +    +     ++V   +R+D   L
Sbjct: 1   MFEYLNGKLVKISPTNIVIDVAGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L SV G+G + A+ +++      L+ +I   + K + + PG+  K 
Sbjct: 60  YGFVNEAEKALFLRLISVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK  +  +V    +         +         AI AL  LGY   +    
Sbjct: 120 AIQMVLDLAGKFDATGTVGISLLDAGPAGNLAL-------EEAIEALQALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L +E  +    + I+ AL+ +
Sbjct: 172 IEKKLAQETGLTS-EEYIKSALKLM 195


>gi|222151527|ref|YP_002560683.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus
           JCSC5402]
 gi|254766967|sp|B9E719|RUVA_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222120652|dbj|BAH17987.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus
           JCSC5402]
          Length = 193

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 14/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   +++I+V G+ Y    P        ++    TL  +  +R+D   L
Sbjct: 1   MYAYLKGKIMTILPTHLVIEVSGIGYECLTP-NPYRFNHQLDQMITLHTQLVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + ++  F  L  V G+G + A+ +L+  T  E++++I  ++   + + PGI  K 
Sbjct: 60  YGFKDEEEKAMFNALNKVTGIGPKSALAILATSTPQEIIKAIESESESYLIKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK            +  ++ +       +    A+ A   LGY + + T  
Sbjct: 120 ARQIILDLKGKL-----------TITDESELFKEVNDTLLNEALLAFEALGYSKREITKI 168

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
              + KK+ +  D  + ++  L+
Sbjct: 169 EKELKKKQFSTVD--EYVKQGLQ 189


>gi|125625244|ref|YP_001033727.1| Holliday junction DNA helicase motor protein [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|166230561|sp|A2RP07|RUVA_LACLM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|124494052|emb|CAL99052.1| holliday junction DNA helicase ruvA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300072054|gb|ADJ61454.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 197

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++ID+ G+ Y+I       +    +     ++V   +R+D   L
Sbjct: 1   MFEYLNGKLVKISPTNIVIDLSGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L SV G+G + A+ +++      L+ +I   + K + + PG+  K 
Sbjct: 60  YGFVNESEKALFLRLISVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK  +  +V    +         +         AI AL  LGY   +    
Sbjct: 120 AMQMVLDLAGKFDATGAVGISLLDAAPASNLAL-------EEAIEALQALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L +E  +    + I+ AL+ +
Sbjct: 172 IEKKLAQEAGLTS-EEYIKSALKLM 195


>gi|319947801|ref|ZP_08021995.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4]
 gi|319438525|gb|EFV93451.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4]
          Length = 199

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  D  +++  GV  +++     L+ L + G    L  E  +R+D + L
Sbjct: 1   MIASIRGTVAEIGLDRCVVETGGVGVLVHATPAALAGL-RRGAEGMLHTELVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   RQ F+ +Q+V GVG R+A+ +++ +    L+ ++   + K +  +PG+  + 
Sbjct: 60  YGFDSVDARQLFLTVQTVSGVGPRLALAIVATLEPEALIRALGTGDVKALTLVPGVGKRT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +           N            A     AL  LG+   +A   
Sbjct: 120 AERMVLELKDKVGPVPDGDAASSVVGNGRA-------PAATEVADALEGLGFSAAEAEKT 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +VL  + ++ D +Q +RLAL+++
Sbjct: 173 ATAVLDSQPDL-DPAQALRLALKSL 196


>gi|215427996|ref|ZP_03425915.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T92]
 gi|289751217|ref|ZP_06510595.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T92]
 gi|289691804|gb|EFD59233.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T92]
          Length = 196

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L  V GVG R+AM  L+   A  L + +   N   + ++PGI  + 
Sbjct: 60  YGFPDGETRDLFLTLLLVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K                   A   +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +VL    +    S + R AL  +
Sbjct: 169 TDTVLAANHDATTSSAL-RSALSLL 192


>gi|298529992|ref|ZP_07017394.1| Holliday junction DNA helicase RuvA [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509366|gb|EFI33270.1| Holliday junction DNA helicase RuvA [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 203

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +    +   L+    G+ Y ++     L  +   G+   L     +R+D + 
Sbjct: 1   MIALIRGTLVSFNDKSCLVMTASGLGYEVHVSAMGLQNMPGQGEELELHTSMVVREDALD 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L +   +G + A+ +L   + +++ + I  ++   + Q+PGI  K
Sbjct: 61  LYGFFTRDERETFNVLLNAPKLGPKTALAILGIFSPSQIQKIINTEDEAALTQVPGIGSK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ +LK +   +S   +                     + ++ L +LGY   + T 
Sbjct: 121 TARRLILDLKDRLGFISPQHEDPRPAPGPR--------GVRQDVLAGLTSLGYSAAEVTP 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  VL+KE ++ D S  IR  L+ 
Sbjct: 173 LLDEVLEKEPDL-DVSSAIRAVLKE 196


>gi|309775420|ref|ZP_07670423.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916809|gb|EFP62546.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 193

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     D ++I+  G+ Y +Y        L        L+   H+R+D I L
Sbjct: 1   MIAFIKGIIHSYSNDSLIIENNGIGYRVYVSNPMAVRLNA---EVILYTYQHVREDAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L SV+GVG + A+G+L    A  ++ +I   + KV+  +PGI  K 
Sbjct: 58  FGFPTMEERDLFLQLISVKGVGPKTALGMLGVCPAKNMIAAIENNDVKVLKGLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +   + ++                    ++A+ AL  LGY   +  + 
Sbjct: 118 ASQIVLDLKGKLVEEVTELE-------------IKENEQLLDALEALKALGYKNAELNSI 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              +  +E   +D  Q IR  L  ++
Sbjct: 165 KKELSTQEPMTSD--QYIRKGLGILA 188


>gi|116513152|ref|YP_812059.1| Holliday junction DNA helicase motor protein [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123025083|sp|Q02VS6|RUVA_LACLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116108806|gb|ABJ73946.1| Holliday junction DNA helicase subunit RuvA [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 197

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 93/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++ID+ G+ Y+I       +    +     ++V   +R+D   L
Sbjct: 1   MFEYLNGKLVKISPTNIVIDLSGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L SV G+G + A+ +++      L+ +I   + K + + PG+  K 
Sbjct: 60  YGFVNESEKALFLRLISVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK  +  +V    +         +         AI AL  LGY   +    
Sbjct: 120 AMQMVLDLAGKFDATGAVGISLLDAAPAGNLAL-------EEAIEALQALGYKATE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L++E  +    + I+ AL+ +
Sbjct: 172 IEKKLEQEAGLTS-EEYIKSALKLM 195


>gi|288906381|ref|YP_003431603.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34]
 gi|306832428|ref|ZP_07465581.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979395|ref|YP_004289111.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733107|emb|CBI14688.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34]
 gi|304425468|gb|EFM28587.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325179323|emb|CBZ49367.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 197

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YI+       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVVEAGGLGYIVNV-ANPYSFSDLVNQEVQIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +S           K      +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVDVSVEN-------GKASQTKTATNEQLEEAMEALLALGYKAAE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +     A   Q I+ +L+ +
Sbjct: 172 IRKFFEGTNETA--EQYIKSSLKML 194


>gi|184201011|ref|YP_001855218.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201]
 gi|229560091|sp|B2GIL9|RUVA_KOCRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183581241|dbj|BAG29712.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201]
          Length = 213

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 14/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59
           MI  + G +  +     +++V G    ++   RTLS L ++G    L      R+D    
Sbjct: 1   MIASVTGEVAFVGATLAVVEVSGFGIEVHASPRTLSGL-RVGATTRLHTAYIARKDEAPL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    +++ F ++  V GVG R A+  +S +   +   +I   + K    +PGI  K
Sbjct: 60  LFGFAQGDEKEIFTVMLGVSGVGPRTALAAVSVLGPEDARRAIAAGDDKAFTAVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL  K +     VQ         QA+   +P +    + AL  LG+ +  A  
Sbjct: 120 SARRIVLELADKLVLPEPPVQ---------QANQPQVPVWRDQVVDALTGLGWSEKDAVR 170

Query: 180 AVVSVLKKEKNIAD---DSQIIRLALRAISC 207
            +   L+ +  + D    ++I+R  L  +  
Sbjct: 171 GIEDALQTQPELGDSGNVAEILRAVLSWLGT 201


>gi|319946048|ref|ZP_08020297.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           australis ATCC 700641]
 gi|319747856|gb|EFW00101.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           australis ATCC 700641]
          Length = 197

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQKVQVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK                + +A +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +  +D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|227894652|ref|ZP_04012457.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047]
 gi|227863547|gb|EEJ70968.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047]
          Length = 195

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV++DV GV Y +Y P        K G    +++E  +R   I L
Sbjct: 1   MYEYFEGVISVITPSYVVVDVNGVGYKVYSPTPFAY---KQGQKAKVYIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK     + + +  S           +     +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYVARLDRTDSG--------EEISPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              + K + + AD
Sbjct: 170 TPKLEKVDADTAD 182


>gi|171778535|ref|ZP_02919662.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282758|gb|EDT48182.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 197

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+V G+ YI+       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVIEVGGLGYIVNV-ANPYSFSDLMNQDIQVYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +S           K      +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVDVSVEN-------GKVSQTKAAANEQLEEAMEALLALGYKAAE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +     A   Q I+ +L+ +
Sbjct: 172 IRKFFEGTNETA--EQYIKSSLKML 194


>gi|325283106|ref|YP_004255647.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           proteolyticus MRP]
 gi|324314915|gb|ADY26030.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           proteolyticus MRP]
          Length = 196

 Score =  197 bits (501), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     ++   G+ Y ++CP  TL+ L K G+   L     +R+D   L
Sbjct: 1   MIVYLSGTVREVRTSSAVLQTGGLGYEVFCPQSTLARL-KPGEAAELHTRFVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF      Q F L+  V GVG ++ + +LS +  + L + I+  ++K+++ + G+  K 
Sbjct: 60  FGFHDTDSAQLFDLVTGVSGVGPKLGLALLSAMPVSTLAQGILDGDAKLLSSVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K  +  +        V    A          +AI AL+ LG+ + Q  T 
Sbjct: 120 AERLILEVQSKVPAHLAAPSGGSKPVTVTTAG--------ADAIDALMALGFREAQVRTV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L      + D  +IR  L  +
Sbjct: 172 VAGLLADNPEQSAD-TLIRKGLGQL 195


>gi|255994147|ref|ZP_05427282.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC
           49989]
 gi|255993815|gb|EEU03904.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC
           49989]
          Length = 194

 Score =  197 bits (501), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I    E  +++D   + Y I  P+ +     +I +   ++ E  +R+D + L
Sbjct: 1   MIKFLRGRIFEKLESCIVLDTGNIGYQINLPLNSPFFTAEISEEVLVYTELIVREDDMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF       +F LL ++ GVGA+ ++ +LS  T  EL  +I  +++  I++  GI  K 
Sbjct: 61  YGFEDFKTLNFFNLLMNINGVGAKASLALLSVSTVDELARAIASKDTAFISRANGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL  K  S++  +  +             +      A  AL++LGY +++A   
Sbjct: 121 AERIALELSDKVESIAYNLPSNNEVT-------SVVSGNKAEACEALMSLGYNKNEA--- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            ++VLK      D    IR AL  +
Sbjct: 171 -MNVLKSLDEGLDTQSYIRKALTLL 194


>gi|160947139|ref|ZP_02094306.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270]
 gi|158446273|gb|EDP23268.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270]
          Length = 200

 Score =  197 bits (501), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G ++ +Y DY++ID  G+ Y I+    TL  +  +GD+ T++ +  +++D + L
Sbjct: 1   MYEYISGELKFIYNDYIVIDNGGIGYKIFTSNNTLFNV-TVGDYYTIYTDYIVKEDYVAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F LL SV  +G +VA G+LS ++   L  +I+  ++  +A   G+  K 
Sbjct: 60  FGFKTMDELSMFKLLVSVNSIGPKVACGILSSMSVDSLKLTIVNGDAVALATAKGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK K  S+ S+  +D+S +                   AL+NLG+ ++     
Sbjct: 120 AQKIILELKDKI-SIDSISSKDISGMEASTLDSGKDLEKRELVSDALINLGFMKNDIERF 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+   E  I     II+L+++ +
Sbjct: 179 LSSINIDEMEI---EDIIKLSMKKL 200


>gi|315037644|ref|YP_004031212.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL
           1112]
 gi|325956129|ref|YP_004286739.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus
           30SC]
 gi|312275777|gb|ADQ58417.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL
           1112]
 gi|325332694|gb|ADZ06602.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus
           30SC]
 gi|327182937|gb|AEA31384.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL
           1118]
          Length = 195

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   Y+++DV GV Y +Y P          G    +++E  +R   I L
Sbjct: 1   MYEYFEGIISVITPSYIVVDVNGVGYKVYSPTPFAYTQ---GQKAKVYIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D       + +   +     +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKL--------GDYVARLDRKDNDEEISPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              +++ + + AD
Sbjct: 170 TPKLIEVDADTAD 182


>gi|282899464|ref|ZP_06307430.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195621|gb|EFA70552.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii
           CS-505]
          Length = 214

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+         + ++V G+ Y +Y P R  + L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVAHIFTHYQIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+G  +A+ ++  +   ELV++II  N+ ++ Q PG
Sbjct: 61  ELPILYGFSSPAERDLFRHLLSVTGIGTAMAIALIDTLELPELVQAIISGNTTMLVQTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A R+  ELKGK +         ++            P+        L  LGY   
Sbjct: 121 VGKKTAERLCLELKGKLVEWRKSAGFFVATGGPP-------PAILEEVQMTLFALGYTPH 173

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207
           + + A+  + +       +     I+ A+  +S 
Sbjct: 174 EVSHALHVISEDIGLPKNSYPEDWIKQAIAHLSS 207


>gi|228475171|ref|ZP_04059897.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119]
 gi|314936245|ref|ZP_07843592.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270782|gb|EEK12184.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119]
 gi|313654864|gb|EFS18609.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 201

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 103/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   IKG++  L+  +++++   G+ Y I  P  +      +   C +F    +R+D   
Sbjct: 1   MYAYIKGHLSQLFPTHIVVETSSGIGYEIQTP-NSYRFQKYLNQECKVFTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+S+ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K
Sbjct: 60  LYGFISEEEKEMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK      + ++    + + +  +    +    A+ AL  LGY + + + 
Sbjct: 120 TARQIVLDLKGKVK----ITEETSETLLQVEGQVEENDNIIKEALLALAALGYSKRELSK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  VL K  +I    + +++ L+ +
Sbjct: 176 -VEKVLNK-TSIHSVDEAVKIGLKTL 199


>gi|220910036|ref|YP_002485347.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425]
 gi|219866647|gb|ACL46986.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425]
          Length = 207

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G I G+        + +DV GV Y +    R ++ L   G+   +F    +R+D
Sbjct: 1   MIGYLQGRIAGVQRGGNRTLLTLDVNGVGYDLQILPRLVNKLPPEGETLQMFTHLQVRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q+ L+GF    +R  F  L SV GVG ++A+ +L  +   ELV++I+  N++ +++ PG+
Sbjct: 61  QMILYGFAITAERDLFRQLISVSGVGPQLALALLEGMELAELVQAIVSGNTRTLSRTPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A RI  ELK K                   A +             L+ LGY   +
Sbjct: 121 GSKTAERIALELKTKLAEWRQQSGLTTVPSAGPIAAV------REEVELTLLALGYSSTE 174

Query: 177 ATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206
              A+ +V +        D    IR A+  +S
Sbjct: 175 VMQALQAVGENTALAKAGDAEAWIRAAIAWLS 206


>gi|325846722|ref|ZP_08169637.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481480|gb|EGC84521.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 197

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ + E+  +I+   + Y+I     T+  L +I +   +F + ++R+D I L
Sbjct: 1   MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F LL SV  +G + A+ VLS +   ++  +I+  +   + +  GI  K 
Sbjct: 60  FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++      +S     +    +       A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMAINDDISIS-----EDSFTTSNKEIDVAREALINLGYQRNSIDKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++   + ++    +II+ AL+ +
Sbjct: 175 LTTLKDSDLSL---EEIIKEALKKM 196


>gi|255311319|ref|ZP_05353889.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276]
 gi|255317620|ref|ZP_05358866.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276s]
 gi|296436034|gb|ADH18208.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9768]
 gi|296437895|gb|ADH20056.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11074]
 gi|297140395|gb|ADH97153.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9301]
          Length = 200

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R    L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSFRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +       + +      +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|260435378|ref|ZP_05789348.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109]
 gi|260413252|gb|EEX06548.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109]
          Length = 222

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 12/214 (5%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       VL+   GV Y ++   R    L   GD   L++    R+D
Sbjct: 9   MIGWLQGRPMECWTQGNRSGVLLLCGGVGYEVHLTERHQQNLPADGD-LNLWIHQVQRED 67

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF    +R  F LL SV GVG +  + ++      ELVE+I   + + + +  GI
Sbjct: 68  GSSLYGFPLRQERDLFRLLISVSGVGPQAGLALMQECKPQELVEAISSGDLRRLCKAQGI 127

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+    S+++    D +    E      MP+   +  + L  LGY   +
Sbjct: 128 GKRTAERLAVELR---ASIAAFAGVDPAPSLAEGVSSEQMPASGADVEATLSMLGYDDLE 184

Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206
              A+ ++ +          D    +R  L+ +S
Sbjct: 185 IRRAIRAIAEGADGQPPAGDDQDAWLRGCLQWLS 218


>gi|312143984|ref|YP_003995430.1| Holliday junction DNA helicase RuvA [Halanaerobium sp.
           'sapolanicus']
 gi|311904635|gb|ADQ15076.1| Holliday junction DNA helicase RuvA [Halanaerobium sp.
           'sapolanicus']
          Length = 200

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L     +IDV GV Y     +     L  +GD   L++ T++R+D ++L
Sbjct: 1   MIGFLEGELIYLEAGQAIIDVNGVGYE--TELAGFDDLPTVGDDIELYIYTYVREDALKL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F S  D++ F +L +V G+G +  + +++ + A   + +I+ +N  V+ +I GI  K 
Sbjct: 59  FAFPSRKDKELFEILITVNGIGPKAGLNIINTMPADRFISAIMQENELVLKKISGIGPKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK      +     S    +            + + AL  LGY   +   A
Sbjct: 119 AQRLILELQGKLEDFVYLKSGQKSSTTSK-----IENEDRQDVVDALTALGYKISEINKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +    ++    S+ IR  L  +
Sbjct: 174 LRKI--SFEDGIAVSEKIRQVLSYL 196


>gi|324992648|gb|EGC24569.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK405]
 gi|324995823|gb|EGC27734.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK678]
 gi|327460051|gb|EGF06390.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1]
 gi|327488641|gb|EGF20441.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1058]
          Length = 218

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGPSESKAPVQTMDNQEL-------EEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|78044333|ref|YP_360355.1| Holliday junction DNA helicase RuvA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|90134706|sp|Q3ABX9|RUVA_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77996448|gb|ABB15347.1| Holliday junction DNA helicase RuvA [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 195

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D V++DV G+ + +    R L  L  +     ++    +R+D   L
Sbjct: 1   MIAVLKGKVLDKTLDSVVVDVNGIGFKVAVLPRELGSLN-LNSEVVMYTSLQVREDGWFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +  R++F LL SV G+G + A+ +L+  T  +L   I  ++ K + ++PG+  K 
Sbjct: 60  YGFSDEETRKFFDLLLSVSGIGPKAALAILNEFTPEKLNWVIANKDEKALTKVPGVGKKN 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K            +     +  + +      +    L++LG    +A   
Sbjct: 120 AQRLFLELKDKI---------GYTSFTSNEESVENFQDLWGDVYKGLLSLGLSAAEAREI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + KK  ++    + I LALR ++
Sbjct: 171 LGKIDKK--SVKTPEEGIALALRFLN 194


>gi|327463456|gb|EGF09775.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1057]
          Length = 218

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +      +  +     +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVVADGPAESKVPVQTADNQEL-------EEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|312870745|ref|ZP_07730852.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           3008A-a]
 gi|311093757|gb|EFQ52094.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           3008A-a]
          Length = 194

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +    
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L+K  N + D   I+ AL+ +
Sbjct: 168 IKPKLEKLPNQSADH-YIKEALKLL 191


>gi|332188826|ref|ZP_08390535.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17]
 gi|332011136|gb|EGI53232.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17]
          Length = 199

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG ++    D+ +IDV GV Y++    RTLS +G +G+   L  E  + +D IRL
Sbjct: 1   MIAHLKGRLDSTGIDHAVIDVGGVGYLVGASARTLSVIGSVGEAAMLHTEMLVSEDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R WF LL  VQGVG+RVA+ +LS +   +L+ +I   +  ++A+  G+  K+
Sbjct: 61  VGFASADERDWFRLLTGVQGVGSRVALAILSALEPADLMRAIASGDKAMVARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +               A   +        +SAL+NLG+   +A+ A
Sbjct: 121 AQRIVMELKDKVGGIVLAPGSGGGAAATVGAGADA--------VSALLNLGFRPAEASAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V S  ++    A    ++RLALR 
Sbjct: 173 VASAEEELGASASLDALVRLALRK 196


>gi|308234389|ref|ZP_07665126.1| Holliday junction DNA helicase subunit RuvA [Atopobium vaginae DSM
           15829]
 gi|328944205|ref|ZP_08241669.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium
           vaginae DSM 15829]
 gi|327491124|gb|EGF22899.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium
           vaginae DSM 15829]
          Length = 214

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 5/210 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  ++ + V++DVQGV Y +     T + L   G    TL V   ++++ + 
Sbjct: 1   MIVQLTGTLVEVFPNSVVLDVQGVGYELGISANTAANLPACGQTAVTLLVRMIVKENAME 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L  + GVG ++A+ VLS  + ++L    + ++   +AQ+PG+  K
Sbjct: 61  LYGFSSRQERNAFDRLIDISGVGPKLALAVLSTYSLSDLATIALSEDVTRMAQVPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A R++ EL       + + +                  S   +A SAL+ +G+   +  
Sbjct: 121 KAQRLLIELADVFAKDAELRILASAEQKTSGAREQAPQHSVLDDAQSALLAMGFTPQEVE 180

Query: 179 TAVVSVLKKEKNIADD---SQIIRLALRAI 205
            A+    KKE N         +I  AL+ +
Sbjct: 181 LALKPYDKKECNDNPSLTAQTVITQALQRL 210


>gi|212704638|ref|ZP_03312766.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098]
 gi|212672037|gb|EEB32520.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098]
          Length = 203

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   +    +++   GV Y +  P  T++ L   G+   L+    +R+D  +
Sbjct: 1   MIAYLEGLLAETWGTSCIVVTRGGVGYELDLPAHTMASLPGRGESVALYTSLVVREDAQQ 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F +L ++  VGAR A+ +LS     +L   ++ ++   + ++ GI  K
Sbjct: 61  LFGFATFEERQVFEVLLTISKVGARTALAILSLYRPDDLRRIVLEEDVDALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  +  ELK K   +  V Q  +   N          S   + +  L NLGY +D+   
Sbjct: 121 TAQHVFLELKYKL-KVEDVPQAAVLAPNGRPG------SVFRDVLDGLSNLGYSEDECAP 173

Query: 180 AVVSVLKKEKNI 191
            V ++L +E ++
Sbjct: 174 VVKNILLQEPDL 185


>gi|169829378|ref|YP_001699536.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           sphaericus C3-41]
 gi|229560099|sp|B1HVA4|RUVA_LYSSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|168993866|gb|ACA41406.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           sphaericus C3-41]
          Length = 206

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 3/197 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +  +Y++++ +G+ + +  P         +     ++V  H+R+D   L
Sbjct: 1   MYDYLKGLITRITPEYIVLEQKGIGWQLNTPNPFAFRTSAMEQ--QIYVHLHVREDAQVL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R+ F  L  V G+G + A+ +L+     +++ +I  ++   + + PG+  K 
Sbjct: 59  YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDETFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  SL   ++   +        +         AI AL  LGY + +    
Sbjct: 119 ARQMILDLKGKLGSLLETIELPSTEDELPLFGVHPYKHELEEAILALAALGYSEKELEK- 177

Query: 181 VVSVLKKEKNIADDSQI 197
           +  +L+    +      
Sbjct: 178 IRPLLEDNDKLETTDAY 194


>gi|300088237|ref|YP_003758759.1| Holliday junction DNA helicase RuvA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527970|gb|ADJ26438.1| Holliday junction DNA helicase RuvA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 195

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG    L  D+V+++V GV Y ++    TLS +   G+   L+    +R+D + L
Sbjct: 1   MISTLKGKAALLGADWVIVEVGGVGYKVFVSTATLSQIQNAGE-IRLYTHLQVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +   F  +  V G+GAR+A+ +LS     +L   I   N+ ++  +PG+  K 
Sbjct: 60  FGFLTFEELGIFETMLEVSGIGARLALALLSAFKPEDLANIIATGNADMLCTVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K               N   A      +   + ++AL  LGY   +A  A
Sbjct: 120 ASRIVLELKDKVAR------------NWSAAPAGEGGAVDNDVMAALTALGYSGAEAARA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           VV++ +  K      + IRLAL  +S
Sbjct: 168 VVALPRDGK--LTLEEKIRLALAGLS 191


>gi|325695327|gb|EGD37227.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK150]
 gi|332365307|gb|EGJ43070.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1059]
          Length = 218

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 97/206 (47%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++   + +        +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|172058107|ref|YP_001814567.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum
           255-15]
 gi|229560031|sp|B1YJR2|RUVA_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171990628|gb|ACB61550.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum
           255-15]
          Length = 197

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  ++V I+V G+ Y I  P       G   +   ++   ++R+DQ  L
Sbjct: 1   MIEFVRGEVAYVCAEFVTIEVGGIGYKIVAPNPFFYRTGD--EQVIVYTYHYVREDQEVL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+G + ++ +++      LVE+I  +    + + PG+  K 
Sbjct: 59  FGFRSRRERALFTKLLGVTGIGPKGSLAIVASGDVDALVEAIEQEKESYLIKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++  +LKGK   L+           +  A +         A  AL  LGY + +    
Sbjct: 119 AKQMTLDLKGKLAELAPDYIPSEGLFAQGNAEL-------NEACEALTALGYSEREVEK- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+    +    Q ++ AL+ +
Sbjct: 171 VKKALQ--GEVLSTDQYVKRALQLL 193


>gi|282882990|ref|ZP_06291594.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis
           315-B]
 gi|281297197|gb|EFA89689.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis
           315-B]
          Length = 198

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 114/206 (55%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKGNI  +YE  +++D   + Y+I      +S L  + +   +++   +R+D I L
Sbjct: 1   MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKL-SLNEELKIYLRLILREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   R  F LL +V  VG +++M +L  + +++L  +I+ +++ ++ + PG+  K 
Sbjct: 60  YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K    S     D+S ++       +       A+ AL++LGY + +A  A
Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP----ALEALLSLGYNEYEAKIA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V + +    + S+IIR AL+ ++
Sbjct: 176 LRNVDQNQ----ELSEIIRQALKVMA 197


>gi|300813213|ref|ZP_07093581.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512666|gb|EFK39798.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 198

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 114/206 (55%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKGNI  +YE  +++D   + Y+I      +S L  + +   +++   +R+D I L
Sbjct: 1   MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKL-SLNEELKIYLRLILREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   R  F LL +V  VG +++M +L  + +++L  +I+ +++ ++ + PG+  K 
Sbjct: 60  YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K    S     D+S ++       +       A+ AL++LGY + +A  A
Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP----ALEALLSLGYNEYEAKIA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V + +    + S+IIR AL+ ++
Sbjct: 176 LRNVDQSQ----ELSEIIRQALKVMA 197


>gi|87124238|ref|ZP_01080087.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9917]
 gi|86167810|gb|EAQ69068.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9917]
          Length = 216

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 8/213 (3%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G+    +E       LI   GV Y +    R ++   +     TL++    ++D
Sbjct: 1   MIGWLQGDRIDTWEQGSRRGWLIACAGVGYEVQLSERHMAD-PEQQRQVTLWIHQVQKED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F  L SV GVG +V + +L+   A ELV++I+  + + ++Q  G+
Sbjct: 60  GSSLFGFPERRERDLFRQLISVNGVGPQVGLALLACWRADELVDAILDGDVRRLSQAQGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQD 175
             + A R+  EL+ +  +    +   +S V+++  H          +    L +LGY   
Sbjct: 120 GKRTAERLAVELRDRLAAGRHQMDAPLSLVDRQDLHALPIAADPLQDLQLTLTSLGYEDL 179

Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206
           +   A+ +V          D    +R  LR +S
Sbjct: 180 EIRRALKAVATGATSPAATDGEAWLRECLRWLS 212


>gi|323350703|ref|ZP_08086364.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis VMC66]
 gi|322123123|gb|EFX94814.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis VMC66]
          Length = 218

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++   + +        +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|196232552|ref|ZP_03131404.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus
           Ellin428]
 gi|196223314|gb|EDY17832.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus
           Ellin428]
          Length = 201

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      +V+++V GV Y +  P+ +   L  +G    +     +R+D   L
Sbjct: 1   MITFLEGTLAEALPTHVVVNVHGVGYHVQIPLSSYDKLPAVGASIKILTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF+++ +R  F LL + V G+G + A+ VLS  T T    +++  ++ ++A+  GI  K
Sbjct: 61  YGFMTNAERDLFRLLVTHVSGIGPKTALDVLSGTTVTNFKAAVVAGDAGLLAKTKGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K    ++      S     +       +   +A+  L+ LGY Q  A  
Sbjct: 121 TAERIIVELKDKVGIAAAWEAASASHAPTPE------EAKVTDAVLGLIALGYKQVDAHK 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V +K         ++R AL+ +
Sbjct: 175 AVKQVQEKGGPAMTTEDLVRQALKIL 200


>gi|328944741|gb|EGG38902.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1087]
          Length = 218

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +      +        +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVVADGPAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|302866772|ref|YP_003835409.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC
           27029]
 gi|315503187|ref|YP_004082074.1| holliday junction DNA helicase ruva [Micromonospora sp. L5]
 gi|302569631|gb|ADL45833.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC
           27029]
 gi|315409806|gb|ADU07923.1| Holliday junction DNA helicase RuvA [Micromonospora sp. L5]
          Length = 200

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +++V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGTVTATGPDHAVVEVGGIGLAVQCAPGTLADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +Q F LLQ+  GVG R+A  VL+  T   + ++I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDRVGPV---------PVGADGAAGVTAGAWPEQVRQALVGLGWTAGQAEQA 170

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           V +V +  +        +++ A+R +
Sbjct: 171 VAAVAETVDGETPPVPVLLKQAIRLL 196


>gi|320093778|ref|ZP_08025625.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319979279|gb|EFW10775.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 199

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +E +  D V++   GV + +         L + GD   +     +R+D + L
Sbjct: 1   MIALLRGVVESIGLDQVVVSAGGVGFGVRVTPAHAQSLTR-GDEAVVHTAMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+G + A+  L+ +   +L  ++  Q+   + +IPG+  K 
Sbjct: 60  YGFASADERDVFERLMGVTGIGPKTALAALAVLRPDDLRRAVRDQDIATLQKIPGVGRKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  E+ GK  + + + +Q                       +ALV LG+ + QA  A
Sbjct: 120 AQRMALEVGGKLGAPAQLPEQGGPAA-------APAGEVEAEVRAALVGLGWSEAQAAKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  +    +D   ++R AL ++
Sbjct: 173 VDALSGQGLGASD---MLRSALVSL 194


>gi|309807405|ref|ZP_07701368.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           01V1-a]
 gi|312872854|ref|ZP_07732916.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873710|ref|ZP_07733755.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2052A-d]
 gi|325913741|ref|ZP_08176102.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B]
 gi|308169327|gb|EFO71382.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           01V1-a]
 gi|311090708|gb|EFQ49107.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091588|gb|EFQ49970.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2062A-h1]
 gi|325476941|gb|EGC80092.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B]
          Length = 194

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIINPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +    
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L+K  N + D   I+ AL+ +
Sbjct: 168 IKPKLEKLPNQSAD-LYIKEALKLL 191


>gi|113952944|ref|YP_730832.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311]
 gi|123031696|sp|Q0I9P0|RUVA_SYNS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113880295|gb|ABI45253.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311]
          Length = 219

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       ++I   GV Y +    R L  L   G  CT+++    R D
Sbjct: 1   MIGWLRGERIEHWSQGGRQGLVIACAGVGYEVQLASRYLQPLSA-GATCTVWIHQVQRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F +L SV G+G +V + +L   +A EL+E+II  + + + Q  G+
Sbjct: 60  GSSLFGFPDRRERDLFRVLISVNGIGPQVGLALLESCSAAELIEAIIDGDLRRLTQAQGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGY 172
             + A R+  EL+ +  + S+    D S ++     +   +   P    +    L  LGY
Sbjct: 120 GKRTAERLAVELRDRLGAWSAEKNSDHSDLSLVDRSDLKSLPIEPDPLQDLQLTLSTLGY 179

Query: 173 GQDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
              +   A+ +V   E      D    +R +LR ++
Sbjct: 180 EDLEIRRAMRAVATGEEVPAANDGDGWLRASLRWLN 215


>gi|324989663|gb|EGC21607.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK353]
 gi|332363708|gb|EGJ41488.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK49]
          Length = 218

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNVGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGQAESKAPVQTADNQEL-------EEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|86605208|ref|YP_473971.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab]
 gi|123765632|sp|Q2JWZ2|RUVA_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|86553750|gb|ABC98708.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab]
          Length = 204

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLY---EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           MI  + G++  +       + ++VQG+ Y +  P R L  L  IG+   +F    +R+ +
Sbjct: 1   MIAFLSGHLVAIEWGERSSLTVEVQGIGYRVKAPARFLKQLPPIGEPVRVFTHLVVRETE 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + L+GF S  +R  F+ L  V GVG  + + +L+     ELV++++ +N ++++  PG+ 
Sbjct: 61  LVLYGFGSPAERDVFVELIKVSGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A R+  ELK K       ++                P+       AL+ LGY   + 
Sbjct: 121 HKTAQRLALELKTKLAHWRQGLEN-----ADRPLAGGPPPAIREEVEMALLALGYSLQEI 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ ++  + +      + +R A+  +S
Sbjct: 176 QAALQALPSQPRP---TEEWLRDAITYLS 201


>gi|223986042|ref|ZP_03636071.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM
           12042]
 gi|223961992|gb|EEF66475.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM
           12042]
          Length = 193

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +  D+++I+ QG+ Y ++        L        +F   H+R+D+  L
Sbjct: 1   MIAMIKGTVFAVGLDWIIIENQGIGYKVFFSRPEAVRL---NQEVRVFTYQHVREDEFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  ++  F+ L SV+G+G + AM +L+  T  ++V+ I   +   + ++PGI  K 
Sbjct: 58  FGFLSMEEQDLFVKLISVKGLGPKTAMNMLAAATYQQMVQMIEQGDVAALKKMPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +              +E+           +A+ AL  LGY Q + +  
Sbjct: 118 ASQIILDLKGKLV--------------REETAEGKSSQAIEDALEALKALGYKQSELSG- 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V+++  +   D + ++L L+ +
Sbjct: 163 LSKVMREHPDKTTD-EYVKLGLQHL 186


>gi|259501311|ref|ZP_05744213.1| crossover junction endoribonuclease subunit A [Lactobacillus iners
           DSM 13335]
 gi|302190965|ref|ZP_07267219.1| Holliday junction DNA helicase RuvA [Lactobacillus iners AB-1]
 gi|309803578|ref|ZP_07697670.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           11V1-d]
 gi|309806006|ref|ZP_07700032.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           03V1-b]
 gi|309809677|ref|ZP_07703533.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           2503V10-D]
 gi|315653062|ref|ZP_07905990.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           iners ATCC 55195]
 gi|325911914|ref|ZP_08174317.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII
           143-D]
 gi|329919608|ref|ZP_08276597.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           1401G]
 gi|259167281|gb|EEW51776.1| crossover junction endoribonuclease subunit A [Lactobacillus iners
           DSM 13335]
 gi|308164326|gb|EFO66581.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           11V1-d]
 gi|308167609|gb|EFO69762.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           03V1-b]
 gi|308170037|gb|EFO72074.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           2503V10-D]
 gi|315489597|gb|EFU79231.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           iners ATCC 55195]
 gi|325476216|gb|EGC79379.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII
           143-D]
 gi|328937413|gb|EGG33835.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           1401G]
          Length = 194

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +    
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L+K  N + D   I+ AL+ +
Sbjct: 168 IKPKLEKLPNQSAD-LYIKEALKLL 191


>gi|332365447|gb|EGJ43208.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK355]
          Length = 218

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGYLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGPSESKAPIQTVDNQEL-------EEAMEAMLALGYKAAE-LKK 193

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V +   + A     I+ AL+ +
Sbjct: 194 IKKVFEGTTDTA--ENYIKSALKML 216


>gi|319940111|ref|ZP_08014465.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           anginosus 1_2_62CV]
 gi|319810825|gb|EFW07152.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           anginosus 1_2_62CV]
          Length = 196

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG +  +   Y++++V  + YI++      +  G++     +FV   +R+D   L
Sbjct: 1   MYEYFKGILSKITAKYIVVEVGQIGYILHV-ANPYAYSGQVNQEIQVFVHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +Q       +   +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVATGVAPKQVAVAATSDNKEL-------EEAMEAMLALGYKAAE-LKK 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +   + A     I+ AL+ +
Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194


>gi|167766364|ref|ZP_02438417.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1]
 gi|167711955|gb|EDS22534.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1]
          Length = 190

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 6/193 (3%)

Query: 13  YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72
               V++D  G+ Y +  P+R  S   KIG    ++   H+R+D + LFGFLS  +++ F
Sbjct: 2   SPGMVVVDNHGIGYQMMVPMRGESF-PKIGQEIKIYTHMHVREDDVSLFGFLSKEEKEAF 60

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            LL  V G+G +V + VLS ++  EL  ++I ++ K I++ PG+  K A +++ ELK K 
Sbjct: 61  ELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKGAKKLILELKDKL 120

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
            S   + +  +     + +   S        I  LV+LGY + +A  AV  V  ++    
Sbjct: 121 -SFEELEEDGVGAEIFDTSADSSDSVMIT--IEGLVSLGYSKSEAAIAVNKV--EDAKDL 175

Query: 193 DDSQIIRLALRAI 205
              ++++ AL+ I
Sbjct: 176 TPEELLKKALKNI 188


>gi|258653556|ref|YP_003202712.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM
           44233]
 gi|258556781|gb|ACV79723.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM
           44233]
          Length = 207

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  ++ D+ +I+V GV   +      L+ L + G+   L+    +R+D + L
Sbjct: 1   MISSVRGEVLAIHLDHAVIEVGGVGLAVRTTPAALAEL-RRGESARLWTTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F L+QSV GVG ++A+ +L+ +   EL  ++   ++  + + PGI  K 
Sbjct: 60  FGFTTTAGKELFELVQSVSGVGPKIALALLAVLDPDELRRALSAGDTATLCRAPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ EL+ K   + S               +   P        ALV LG+   QA 
Sbjct: 120 AERLVLELRDKVGPVGSPAAGVAPVAGAASGSLAWRPQVTD----ALVGLGFTAKQAE 173


>gi|108762337|ref|YP_633128.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622]
 gi|123374257|sp|Q1D2J5|RUVA_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|108466217|gb|ABF91402.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622]
          Length = 202

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     +   IDV GV Y +      L  L   G    + V T +R+D   L
Sbjct: 1   MISRLRGTVLEKDLEDATIDVGGVGYRVNFSSLALGKLPAEGQPVDVRVRTVVREDAFDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  + + F+LL SV  VG R+++ VLS +   ELV ++       +A+I G+  K 
Sbjct: 61  FGFLTKGEEEVFLLLNSVSRVGPRLSLMVLSGMEVPELVAALSRGEVARLAKIHGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  ++                   ++     + +SAL+NLGY Q QA  A
Sbjct: 121 AERLVLELKDKVKTIHLE-------AVSRGTAPAAVSGAHADLVSALLNLGYKQPQAEKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                ++    A    + R AL+A+
Sbjct: 174 ADLASERLGAEATFQALFREALKAL 198


>gi|325689191|gb|EGD31198.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK115]
          Length = 218

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +      +        +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVVADGPAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|86608038|ref|YP_476800.1| Holliday junction DNA helicase RuvA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123738043|sp|Q2JNW8|RUVA_SYNJB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|86556580|gb|ABD01537.1| Holliday junction DNA helicase RuvA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 204

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLY---EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           MI  + G++  +       + ++VQG+ Y +  P R L  L  +G+   +F    +R+ +
Sbjct: 1   MIAFLSGHLVAIEWGERSSLTVEVQGIGYRVKAPGRFLKQLPAVGEPVRVFTHLVVRETE 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + L+GF S  +R  F+ L  V GVG  + + +L+     ELV++++ +N ++++  PG+ 
Sbjct: 61  LVLYGFGSPAERDLFVELIKVSGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A R+  ELK K        +Q M   ++  A    MP        AL+ LGY   + 
Sbjct: 121 HKTAQRLALELKTKLAHW----RQGMGVADQPLAGGPPMP-IREEVEMALLALGYSTQEI 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ ++    +        +R A+  +S
Sbjct: 176 QAALQALPTHPRP---TEDWLRDAITYLS 201


>gi|315221510|ref|ZP_07863430.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211]
 gi|315189344|gb|EFU23039.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211]
          Length = 196

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG +  +   Y++++V  + YI++      +  G++     +FV   +R+D   L
Sbjct: 1   MYEYFKGILSKITAKYIVVEVGQIGYILHV-ANPYAYSGQVNQELQVFVHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +Q       +   +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVATGVAPKQVAVAATSDNQEL-------EEAMEAMLALGYKAAE---- 168

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|328465569|gb|EGF36798.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 1816]
          Length = 175

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 4/179 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +   
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKK 175


>gi|120602036|ref|YP_966436.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris DP4]
 gi|166230546|sp|A1VC43|RUVA_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120562265|gb|ABM28009.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio vulgaris
           DP4]
          Length = 202

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  +  +  ++    GV Y ++ P  TL+ L   G   + F+ T +R+D + 
Sbjct: 1   MIAYVEGRLAEVAGNACVVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +RQ F++L S+  VGA+  + +LS+    +L   ++  +   + ++ GI  K
Sbjct: 61  LYGFATWDERQTFIVLTSISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K           +                  +A++ L NLGYG+++A+ 
Sbjct: 121 TAQHIFLELKYKLKVEDLPAAAPLVTGGAPGG-------VFRDALAGLANLGYGEEEASH 173

Query: 180 AVVSVLKKEKNI 191
            +  VL  E ++
Sbjct: 174 VLKEVLHGEPDL 185


>gi|148657871|ref|YP_001278076.1| Holliday junction DNA helicase RuvA [Roseiflexus sp. RS-1]
 gi|166200257|sp|A5UZS3|RUVA_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148569981|gb|ABQ92126.1| Holliday junction DNA helicase subunit RuvA [Roseiflexus sp. RS-1]
          Length = 197

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  D+V+++  G+ ++IY P   ++ LG IG    LF    +R+D + L
Sbjct: 1   MIASIRGILIAVAADHVVVETGGIGWMIYAPRPVIAALGDIGATVRLFTYLLVREDSLTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   RQ F  L SV GVG + A+ +LS  T  EL  +I   +   +A+ P I  K+
Sbjct: 61  YGFETVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVTRLARTPRIGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK          ++  +    A   ++ +       AL++LG+   +A  A
Sbjct: 121 AERLVLELKGKI---------NVKGLPTGAAVTPAVAAANAELSEALISLGFTDAEAAAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + ++        D  + +RLALR  S 
Sbjct: 172 IAALPSDAPP--DLEERVRLALRYFSA 196


>gi|78184871|ref|YP_377306.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9902]
 gi|123770922|sp|Q3AVK0|RUVA_SYNS9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78169165|gb|ABB26262.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp.
           CC9902]
          Length = 214

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 12/214 (5%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       VL+   GV Y +    R    L +     TL++    R+D
Sbjct: 1   MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF S  +R  F LL  V GVG +  + +L      ELV +I   + K + Q  GI
Sbjct: 60  GSSLFGFPSRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGGDLKRLCQAQGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  +L+    +   +  Q       E      +P    +  + L++LGY + +
Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLEPQPSLV---EGLASEQIPEAGEDVEATLISLGYDELE 176

Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206
              A+ ++         +  D    +R  L+ +S
Sbjct: 177 IRRAIRAIADGASGVPPSGTDQDGWLRSCLQWLS 210


>gi|300868186|ref|ZP_07112818.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp.
           PCC 6506]
 gi|300333810|emb|CBN58002.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp.
           PCC 6506]
          Length = 207

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  +KG +  + +      ++++V  + Y +    R    L  +G+   +F    +++D
Sbjct: 1   MINYLKGTVADIQKGNNRVMLILEVNQIGYEVQILPRMTGQLPAMGEVVQVFTHQQVKED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q+ L+GF+S  +R  F  L SV G+GA++A+ +L  +   +LV++I+  N++++A+ PG+
Sbjct: 61  QMVLYGFISGAERNLFRQLVSVSGIGAQLAIALLETLGLQDLVQAIVGGNTRILAKTPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R++ EL+ K     +      S                      L+ LGY   +
Sbjct: 121 GNKTAERLVLELRTKLSEWRNQEGLSTSV------PAGVSSVIQEEVEMTLLALGYTGAE 174

Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAIS 206
              A+   L ++ ++    +    IR A+  +S
Sbjct: 175 VMQAL-QALSQDPSLLKKGNAEDWIREAIAWLS 206


>gi|86740076|ref|YP_480476.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3]
 gi|86566938|gb|ABD10747.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3]
          Length = 247

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 2/186 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV  +++C   TLS L ++G+  +L     +R+ ++ L
Sbjct: 1   MIASLAGTVTALTPLSAVIEVGGVGLLVHCSPSTLSRL-RVGESASLATTLIVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +LQS  GVG ++A  VL       +  ++  ++  V+ ++PGI  K 
Sbjct: 60  YGFADADARDVFEILQSAAGVGPKLAQAVLGVHDPDTVRRAVAEEDLAVLTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ +L+ +                +  +         A     ALV LGY   +A  
Sbjct: 120 AQRIVLDLRDRLGPPGDGAPLPGPRLTSGPEPMPADAVGVAATVREALVGLGYSGREADA 179

Query: 180 AVVSVL 185
           AV   L
Sbjct: 180 AVSRAL 185


>gi|315604284|ref|ZP_07879350.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313990|gb|EFU62041.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 201

 Score =  194 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 93/205 (45%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+V + V G+ + ++        + +     T+     +R+D + L
Sbjct: 1   MISILRGTVASTGLDHVDVVVGGIGFRVHVTPACAQAMAR-DREITVHTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L +V G+G ++A+  L+ +   +L  ++  Q+  V+ +IPG+  K 
Sbjct: 60  YGFESSDERDVFAALMTVSGIGPKIALAALAVLRPDDLRRAVRDQDLAVLQRIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  E+  K  S        +      ++   +  + A     ALV LG+ + QA  A
Sbjct: 120 AQRMALEIGDKLGS-----PAALPGAGPTRSAPPAEDAVAAEVRVALVGLGWSETQACAA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +D   ++R AL  +
Sbjct: 175 IEKLAGSGLGASD---MLRAALVTL 196


>gi|189183542|ref|YP_001937327.1| Holliday junction DNA helicase RuvA [Orientia tsutsugamushi str.
           Ikeda]
 gi|229560111|sp|B3CRA9|RUVA_ORITI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189180313|dbj|BAG40093.1| holliday junction DNA helicase RuvA [Orientia tsutsugamushi str.
           Ikeda]
          Length = 205

 Score =  194 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI K+KG ++ + + Y++ID+ GV Y +Y   +TL  L  + G   +LF+ETH+R+D+I 
Sbjct: 1   MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL + ++  F +LQSV G+G ++A+ +LS +T  +L  +I  QN   +  I G+  K
Sbjct: 61  LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +  R+M EL+ K  +++++     + +        +  +   +AI+AL+ LG  + +AT 
Sbjct: 121 LIDRLMIELRDKVANINTIANN--TSLATLSTDSNTHDNILSDAITALIALGISRAEATQ 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  +     +I   ++++R AL+ 
Sbjct: 179 ILSDIYALSPSI-SVNELVRTALQR 202


>gi|329769669|ref|ZP_08261073.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325]
 gi|328838424|gb|EGF88033.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325]
          Length = 192

 Score =  194 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +    +++D  G+ Y I         L    +   +F+   +R+D   L
Sbjct: 1   MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEYQLE---EEKQIFISQQVREDSNTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q++  + + PGI  K 
Sbjct: 58  YGFSTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDAVYLTKFPGIGKKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK                       +   +  +A+ AL  LGY + + T  
Sbjct: 118 AQQIILDLQGKV-----------DFAATASTPNNNANQYLKDALLALEALGYSKKELTKI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +   + +  D    ++  L+ +
Sbjct: 167 EKKLSAFDYDGVDS--YVKQGLKLL 189


>gi|116514518|ref|YP_813424.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274750|sp|Q048Y6|RUVA_LACDB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116093833|gb|ABJ58986.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126230|gb|ADY85560.1| Helicase Holliday junction [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 197

 Score =  194 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L
Sbjct: 1   MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KEGDKARIYVEQVVRENGMTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F  L  V G+G + A+ +++      L  +I       + + PGI  K 
Sbjct: 58  YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+GK  +  +        +  E   + S+     +A+ AL  LGY Q +    
Sbjct: 118 ASQIVLDLRGKMGNYVA------ENLFTEDEPVESVFPALEDALLALGALGYSQKEVDR- 170

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +   LKK   ++ D + I+  L
Sbjct: 171 IKPKLKKLPEMSAD-EYIKQGL 191


>gi|46580661|ref|YP_011469.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81566321|sp|Q729U3|RUVA_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46450080|gb|AAS96729.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234390|gb|ADP87244.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris RCH1]
          Length = 202

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  +  +  ++    GV Y ++ P  TL+ L   G   + F+ T +R+D + 
Sbjct: 1   MIAYVEGRLAEVAGNACVVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +RQ F++L S+  VGA+  + +LS+    +L   ++  +   + ++ GI  K
Sbjct: 61  LYGFATWDERQTFIVLTSISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K           +                  +A++ L NLGYG+++A+ 
Sbjct: 121 TAQHIFLELKYKLKVEDLPAAAPLVTGGAPGG-------VFRDALAGLANLGYGEEEASH 173

Query: 180 AVVSVLKKEKNI 191
            +  VL  E ++
Sbjct: 174 VLKDVLHGEPDL 185


>gi|257066397|ref|YP_003152653.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM
           20548]
 gi|256798277|gb|ACV28932.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM
           20548]
          Length = 195

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G++  + ED  +I+   + Y+I+  ++TLS + +I +   ++    +R+D I L
Sbjct: 1   MISYIIGHVRSIKEDSFIIENNNMGYLIFSSLKTLSNI-EINNEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F LL SV  +G ++AMG+LS I+  E+  +II  +   +    GI  K 
Sbjct: 60  FGFFTKDELEMFTLLTSVSTIGPKIAMGILSSISVNEIKTAIINNDIDKLTVAKGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   +  V  +++   +K+   I         A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMDFVPVENIELNSKDNEEIDV-------AREALLNLGYEKNDVEKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   + ++     +++ +L+ +
Sbjct: 173 LFELKDTDLSL---EGLVKESLKRL 194


>gi|312875156|ref|ZP_07735169.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2053A-b]
 gi|311089263|gb|EFQ47694.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2053A-b]
          Length = 194

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +    
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L+K  N + D   I+ AL+ +
Sbjct: 168 IKPKLEKIPNQSAD-LYIKEALKLL 191


>gi|15827159|ref|NP_301422.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae TN]
 gi|221229637|ref|YP_002503053.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae Br4923]
 gi|730695|sp|P40832|RUVA_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767378|sp|B8ZUI1|RUVA_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|466820|gb|AAA17095.1| ruvA [Mycobacterium leprae]
 gi|13092707|emb|CAC29990.1| Holliday junction DNA helicase component [Mycobacterium leprae]
 gi|219932744|emb|CAR70575.1| Holliday junction DNA helicase component [Mycobacterium leprae
           Br4923]
          Length = 203

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  G+ Y +      L+ L + G    L     +R+D + L
Sbjct: 1   MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATL-RQGSQARLVTAMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F+ L SV GVG R+AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K   + +      +  +                + ALV LG+   QA  A
Sbjct: 120 AERIVLELRDKVGPVGASGLTVGTAADGNAVRGS--------VVEALVGLGFAAKQAEEA 171

Query: 181 VVSVLKKE---KNIADDSQIIRLALRAI 205
              VL  E         S  +R AL  +
Sbjct: 172 TDQVLDGELGKDGAVATSSALRAALSLL 199


>gi|254518551|ref|ZP_05130607.1| holliday junction DNA helicase motor protein [Clostridium sp.
           7_2_43FAA]
 gi|226912300|gb|EEH97501.1| holliday junction DNA helicase motor protein [Clostridium sp.
           7_2_43FAA]
          Length = 201

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+  DY++I+  G+ Y I+    T+S + KI +   L++E  +R+D + L
Sbjct: 1   MYEYIRGKYKGINRDYIIIENNGIGYKIFTSGATMSSMPKIDEEVKLYLEQIVREDFLGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS      L  +I++ + K + + PGI  K 
Sbjct: 61  YGFDAREELEMFKLLLSINGVGAKAALSLLSISRINNLRYAIMMGDEKHLCKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K          + S   ++     +            +   Y + +A  A
Sbjct: 121 AGRIILELKDKIKKEDISEVIEGSGEFEDLMPNNASNIAEALGALLALG--YSEKEAEAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K +        II+  L+ +
Sbjct: 179 LKKVDKTD----TLENIIKNCLKVL 199


>gi|78212692|ref|YP_381471.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp.
           CC9605]
 gi|123756909|sp|Q3AKG6|RUVA_SYNSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78197151|gb|ABB34916.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9605]
          Length = 214

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 88/214 (41%), Gaps = 12/214 (5%)

Query: 1   MIGKIKGNIEGL----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           M+G +KG I           + ++  GV Y +    R    L +      L++   +  D
Sbjct: 1   MVGWLKGLIVYKLQRGNRSQITLNCNGVGYEVQITQREWLTL-ENDQTIQLWIHQSISAD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
             + FGF S  +R  F  L SV GVG +  M ++    + ELVE+I   + + + +  GI
Sbjct: 60  NWQFFGFKSTQERDIFRELISVNGVGPQAGMALMQECKSQELVEAISNGDLRRLCKAQGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+    S+++    D +    E      MP    +  + L  LGY   +
Sbjct: 120 GKRTAERLAVELR---ASIAAFAGMDPAPSLAEGVSSEQMPESGADVEATLSMLGYDDLE 176

Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206
              A+ ++ +          D    +R  L+ +S
Sbjct: 177 VRRAIRAIAEGSDGPPPPGDDQDAWLRGCLQWLS 210


>gi|269216143|ref|ZP_06159997.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122]
 gi|269130402|gb|EEZ61480.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122]
          Length = 196

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G + G  +    +DV GV + +      LS L   G+   +     +R+D + L
Sbjct: 1   MIAFLNGVVAGKNQSTAFVDVGGVGFAVGMSANDLSRLPPTGERVLIHTYFAVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS   +  F  L  V  VG ++A+  LS   A+E + +++  ++  ++++PGI  K+
Sbjct: 61  YGFLSLESKSLFEKLIGVSSVGPKIALAALSTFKASEFIAAVLSGDAAAVSKVPGIGKKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKG           D S  +          +    A  AL+ +G+   +A  A
Sbjct: 121 AQRIILELKGSL--------ADASVDDLFSTKAGEQAARLQGAKEALLAMGFTSAEADVA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +    +  DS +++ ALR +
Sbjct: 173 LKDAPET---LVTDSALLQYALRRL 194


>gi|320160780|ref|YP_004174004.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea
           thermophila UNI-1]
 gi|319994633|dbj|BAJ63404.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea
           thermophila UNI-1]
          Length = 191

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L E Y++I V  V   ++ P  TL    + G+   LF    +R+D + L
Sbjct: 1   MIAYVEGKVLELGETYLVIQVGAVGLQVFVP-STLRAKARAGETLVLFTYLVVREDLMAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R++F LL  V G+G R+A+ +LS ++   +  +I+ +  +V++++PG+  K 
Sbjct: 60  YGFETPLEREFFGLLLGVNGIGPRLAISILSVLSVDAIRRAILSEQPEVLSRVPGVGRKN 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+  L+GK                +    +  M       + AL +LGY   +A TA
Sbjct: 120 AQKIILSLQGKV-------------TAEGLEGVRPMAEVDQEVLEALTSLGYSVVEAQTA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V S+ K      D  + ++LALR  S 
Sbjct: 167 VQSIPKDAP--MDLEERLKLALRYFST 191


>gi|227875448|ref|ZP_03993589.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris
           ATCC 35243]
 gi|269977300|ref|ZP_06184273.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1]
 gi|306818760|ref|ZP_07452482.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           mulieris ATCC 35239]
 gi|307701010|ref|ZP_07638035.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16]
 gi|227844002|gb|EEJ54170.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris
           ATCC 35243]
 gi|269934603|gb|EEZ91164.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1]
 gi|304648446|gb|EFM45749.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           mulieris ATCC 35239]
 gi|307614005|gb|EFN93249.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16]
          Length = 193

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D   I   G+    +    TLS L + G    ++    +R+D + L
Sbjct: 1   MIALLKGQVVDKRIDRATILCGGLGLEFFATPNTLSTLNQ-GQDAEIYTCLVVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R+ F +L  V+G+G ++A+  L+ ++ ++L  ++  ++   + +IPG+  K 
Sbjct: 60  YGFDDFQQRETFQILIQVKGIGPKLALATLAVLSPSDLANAVANRDLTTLQRIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  E+  K   + + V    +                   + AL NLG+ Q QAT A
Sbjct: 120 AERMSLEIGDKLGIVPTSVTTAATGGGFNATT----------VVEALTNLGWNQAQATEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V ++        D +  +R AL+ +  
Sbjct: 170 VNAI-----EANDAATALREALQYLGS 191


>gi|325686747|gb|EGD28773.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK72]
          Length = 218

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +      +        +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVVADGPAESKAPVQIVDNQEL-------EEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|104774420|ref|YP_619400.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|300811568|ref|ZP_07092052.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|123251847|sp|Q1G940|RUVA_LACDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|103423501|emb|CAI98403.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|300497428|gb|EFK32466.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 197

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L
Sbjct: 1   MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F  L  V G+G + A+ +++      L  +I       + + PGI  K 
Sbjct: 58  YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+GK  +  +        +  E   + S+     +A+ AL  LGY Q +    
Sbjct: 118 ASQIVLDLRGKMGNYVA------ENLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +   LKK   ++ D + I+  L
Sbjct: 171 IKPKLKKLPEMSAD-EYIKQGL 191


>gi|169824513|ref|YP_001692124.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
 gi|302380570|ref|ZP_07269035.1| Holliday junction DNA helicase RuvA [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233766|ref|ZP_07320420.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4]
 gi|229560032|sp|B0S1J4|RUVA_FINM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167831318|dbj|BAG08234.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
 gi|302311513|gb|EFK93529.1| Holliday junction DNA helicase RuvA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495200|gb|EFL54952.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4]
          Length = 198

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  ++E+Y++++   + Y I+        +    D   ++ E   R+D   L
Sbjct: 1   MYSYIIGVITEVHENYIVLENNNIGYKIFITDFFRDNVSAF-DEYKVYTEFVEREDASIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F LL  V  +G + AM +LS +T  E   +II  + K++ Q PG+  K 
Sbjct: 60  YGFSSQKERELFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K        ++D     K         + +  A  AL+ LGY ++     
Sbjct: 120 ASRIILELKEKI-------EKDFVPSEKPVNKEVKRSNDSEFAREALLQLGYFKNDVDAF 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + +    + +      I++ A++++  
Sbjct: 173 IEN---TDISGLSIEDIMKKAMKSLDS 196


>gi|29839888|ref|NP_828994.1| Holliday junction DNA helicase motor protein [Chlamydophila caviae
           GPIC]
 gi|33301629|sp|Q824M5|RUVA_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29834235|gb|AAP04872.1| Holliday junction DNA helicase RuvA [Chlamydophila caviae GPIC]
          Length = 207

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I+ P R L  L G++     ++  T +R+ +  
Sbjct: 1   MYDYIRGILTYMSSGTLVIECQGLGFNIFAPDRWLIELSGQLHREVVVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F +L S  GVG +  + +L+  + ++L      ++ + IA +PGI  K
Sbjct: 61  LYGFSSRRERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDVRAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  + ++     +      PS     I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLPDLLPLDSKAIASWESVK------PSCMDEGIQALAALGYSKPSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +    A  ++I+ +AL+ 
Sbjct: 175 MIAEAMSELPENASLAEILPIALKK 199


>gi|148244503|ref|YP_001219197.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326330|dbj|BAF61473.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 202

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I       +L++V  + Y I C + +   +G   +  +L+    ++++   L
Sbjct: 3   MIGKLSGTILEKNPPEILLEVDKIGYEILCSMSSFYAMGDE-EQLSLYTHLSIKENAHIL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  ++  F  L  + G+G +VA+ +LS +    L++ I   N  ++A+ PGI +K 
Sbjct: 62  YGFISKDEKTLFRELIRINGIGPKVALAILSHLDINSLIKVITDGNDTLLAKTPGIGIKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +   L    +   +   K              A +AL  LG+   ++   
Sbjct: 122 AQKLIVELKDRLEKLKLNNENHKNIHIK-----FKKNPNIKQASAALQALGFKARESEKM 176

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  +   + N      +IR AL+
Sbjct: 177 LSVI---KDNSLSTKALIRQALQ 196


>gi|281413717|ref|ZP_06245459.1| Holliday junction DNA helicase RuvA [Micrococcus luteus NCTC 2665]
          Length = 216

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +  D  +I V G+        +TLS L + G    +     +++D + L
Sbjct: 3   MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHE-GRPGAVQTHLVVKEDALTL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R+ F +L +  GVG R+A+ +LS      +  ++  ++ K + ++PGI  K+
Sbjct: 62  SGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKM 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+       V    +  + E A       +  + + A+  LG+ + +A  A
Sbjct: 122 ARKIIVELSGRLAPTGEPVPGAEAEASDEPAVETV---WHADVVQAMAGLGWSEKEALKA 178

Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203
           V + +     +    D + ++R  LR
Sbjct: 179 VEATVAARPELDEGRDVAALLRATLR 204


>gi|327472197|gb|EGF17634.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK408]
          Length = 218

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +    +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSSLVNQETQIYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++  S  +        +   +         A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAAGSPAESKAPVQTADNQEL-------EEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|126642622|ref|YP_001085606.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC
           17978]
          Length = 176

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 8/181 (4%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            Y I  P+ T   L K G   TL+    +R+D  +L+GF    ++  F  L  V GVG +
Sbjct: 2   GYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQLYGFSDAQEKTIFRTLLKVNGVGPK 60

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMS 144
           +A+G+LS ++   LV +I   +   + ++PG+  K A R+M EL+ +  +L+    Q  S
Sbjct: 61  MALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKTAERLMIELRDRFKTLA----QGTS 116

Query: 145 CVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                        S    A +AL +LGY   +A     +V   + +  + + IIR AL++
Sbjct: 117 SAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQ---KAVAAVKADYTESADIIRAALKS 173

Query: 205 I 205
           +
Sbjct: 174 M 174


>gi|309800933|ref|ZP_07695065.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222469|gb|EFO78749.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 185

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +     LI+V GV Y I  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASMHA-GQEVKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A +I+ ELKG           D+S +    + I           +  L++LG+ Q  A  
Sbjct: 120 AQKIILELKG---------SIDLSQIETAASVISRPEDTGSEQVVEGLISLGWRQQDALH 170

Query: 180 AVVSV 184
           AV  V
Sbjct: 171 AVQEV 175


>gi|331002346|ref|ZP_08325864.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330410162|gb|EGG89596.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 196

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +     D ++++  G+ Y ++   R +  + K  D   ++    +  D   L
Sbjct: 1   MIAYIKGIVTEKNTDSIIVECSGLGYEVFTCGRDIQSVSKT-DEILIYTYLRISDDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  + GVG + A+ ++S + + +L  +I+  + K I+   GI  KI
Sbjct: 60  YGFLNKDDLLMFKKLLGISGVGPKAALSIMSTLGSFDLKMAIVSDDYKAISAAQGIGQKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K          D+  +        +  +       AL++LGY   +A   
Sbjct: 120 AKRIILDLKEKV---------DLGSILVSDIDNTADSTVQTETAQALISLGYSSSEAYKV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S+  K+ +      ++++AL+ ++
Sbjct: 171 LKSMDIKDSDK--VEDVLKIALKKMA 194


>gi|218961233|ref|YP_001741008.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729890|emb|CAO80802.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas
           acidaminovorans]
          Length = 202

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +        +I+  G+ + +  PI T   L   G  C L    H+ QD IR+
Sbjct: 4   MIQYISGTLTFKTPVLAIIETMGIGWELKIPISTYEKLPTAGKPCKLLTYLHISQDDIRI 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R+ F++L  V G+G ++A+ +LS ++    ++++      ++ ++PGI  K 
Sbjct: 64  FGFATEAERELFVMLNKVGGIGPKIALSILSTLSIPTFIKAVNSGEEGLLTRVPGIGKKS 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK     L + + Q              +   +    SAL++LG+   Q    
Sbjct: 124 AQRLIVELKDDVHKLLNHIDQ----------KELQIGDVSSEVESALLSLGFNLHQIRKE 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +++ +     +  ++I+  ++ I
Sbjct: 174 L-ALMDESMQKLNTEELIKEIIKRI 197


>gi|294811584|ref|ZP_06770227.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC
           27064]
 gi|326440227|ref|ZP_08214961.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC
           27064]
 gi|294324183|gb|EFG05826.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC
           27064]
          Length = 204

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     ++ V GV   ++C   TL+ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + + +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +    + V           +    +  S++    +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGEPTGVPG-------ARRGAAAAPASWSDQLHAALIGLGYAGREADEA 172

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  +        Q   +++ AL+ ++
Sbjct: 173 VAAVTPQAAAAGAAPQVGVLLKAALQTLN 201


>gi|306821186|ref|ZP_07454801.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550772|gb|EFM38748.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 201

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +     ++V+++   + Y +     T   L ++    T++    +++D + L
Sbjct: 1   MIDYISGTVVQKGLNHVVVECNNIGYKLLVSQNTSYEL-ELEKISTVYTHLIVKEDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF +  +R  F +L SV  +GA++A+ +LS  TAT++   I   +   + ++ G+  K 
Sbjct: 60  IGFSNMSERDMFRILISVSKIGAKIALSILSTYTATQIATFIKSADVVSLGKVSGLGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K        +         +  I          I AL  LG+   +A ++
Sbjct: 120 AERLVLELKDKVDIFVGSEE----IAKIRKDDIPQEDEKMSQVIEALTMLGFSNKEAVSS 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              V   +K+ AD   +I+ +L  +
Sbjct: 176 AEKVYALDKD-ADVQSLIKSSLALL 199


>gi|317485564|ref|ZP_07944441.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6]
 gi|316923244|gb|EFV44453.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6]
          Length = 203

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 9/196 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  +  +  ++    GV Y +Y P +T   L + G     ++   +R+D   
Sbjct: 1   MIAYIEGRLAEVCANACVVVTEGGVGYEVYLPQQTRLQLPERGGHVRFYICHIVREDAQE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F++L S+  VGAR A+G+LS     +L   ++  +   + Q+ GI  K
Sbjct: 61  LFGFETWDERQTFIVLTSISKVGARTALGILSAFRPDDLRRLVLEDDVLALTQVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K         +DM      Q  +    S   +A++ L  LGY + +A  
Sbjct: 121 SAQHIFLELKYKLK------VEDMPAAASLQLGVPG--SVYRDALTGLEGLGYAEAEAAP 172

Query: 180 AVVSVLKKEKNIADDS 195
            + ++L +E ++    
Sbjct: 173 VLKNILHEEPDLEVSE 188


>gi|29833376|ref|NP_828010.1| Holliday junction DNA helicase RuvA [Streptomyces avermitilis
           MA-4680]
 gi|44888446|sp|Q820F4|RUVA_STRAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29610499|dbj|BAC74545.1| putative Holliday junction DNA helicase subunit B [Streptomyces
           avermitilis MA-4680]
          Length = 203

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V G+   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RMGREAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVSTGDEKALVAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177
           A +++ ELK +          +                +     +AL+ LGY      +A
Sbjct: 120 AQKLLLELKDRL--------GEPLGTGGPAIGRAVTTGWREQLHAALIGLGYATREADEA 171

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV    +         Q+++ AL+ ++
Sbjct: 172 VAAVAPQAEAAGGTPQVGQLLKAALQTLN 200


>gi|325685740|gb|EGD27818.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 197

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L
Sbjct: 1   MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F  L  V G+G + A+ +++      L  +I       + + PGI  K 
Sbjct: 58  YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+GK  +  +        +  E   + S+     +A+ AL  LGY Q +    
Sbjct: 118 ASQIVLDLRGKMGNYVA------ENLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LKK   ++ D + I+  L  +
Sbjct: 171 IKPKLKKLPEMSAD-EYIKQGLGLL 194


>gi|225352127|ref|ZP_03743150.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157374|gb|EEG70713.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 205

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G ++ +     +I+V GV Y    P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLHGQVDFIDAASAIIEVGGVGYETRMPSADLASMHA-GQTVKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +A+ PG+  K 
Sbjct: 60  YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLAKAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A +I+ ELKG           D+S +      + S         +  L++LG+ Q  A  
Sbjct: 120 AQKIILELKG---------SIDLSQIEGASKEVRSAEDAGSEQVVEGLMSLGWRQQDALH 170

Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205
           AV +V +           D  ++++LAL ++
Sbjct: 171 AVQTVCESNHINVPLRDDDVPRVLKLALASL 201


>gi|20455269|sp|Q9L9C4|RUVA_RHIET RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7110154|gb|AAF36813.1|AF175525_1 RuvA [Rhizobium etli]
          Length = 206

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DVQGVCY+ YC  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVE--SIILQNSKVIAQIPGISM 118
           FGF++ L+R+WF LL       A       SR           I LQ+   +++ PG+  
Sbjct: 61  FGFMTALEREWFNLLSKASRASAPRWRSPCSRPLNARPSSPMPIALQDRAAVSRAPGVGP 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+A R++TELK +A + +    + ++   K +       +   +A+SAL NLGY +DQA 
Sbjct: 121 KVAMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAA 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV + +K     AD +++IRL L+ ++
Sbjct: 178 NAVAAAMKTAGEGADSAKLIRLGLKELA 205


>gi|148284809|ref|YP_001248899.1| Holliday junction DNA helicase motor protein [Orientia
           tsutsugamushi str. Boryong]
 gi|166230578|sp|A5CEJ4|RUVA_ORITB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146740248|emb|CAM80579.1| Holliday junction DNA helicase [Orientia tsutsugamushi str.
           Boryong]
          Length = 205

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 120/205 (58%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI K+KG ++ + + Y++ID+ GV Y +Y   +TL  L  + G   +LF+ETH+R+D+I 
Sbjct: 1   MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL + ++  F +LQSV G+G ++A+ +LS +T  +L  +I  QN   +  I G+  K
Sbjct: 61  LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +  R+M EL+ K  +++++       +    ++  +  +   +AI+AL+ LG  + +AT 
Sbjct: 121 LIDRLMIELRDKVANINTIANNTSLAILSTDSN--THDNILSDAITALIALGISRAEATQ 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  +     +I   ++++R AL+ 
Sbjct: 179 ILSDIYALFPSI-SVNELVRTALQR 202


>gi|125719033|ref|YP_001036166.1| Holliday junction DNA helicase RuvA [Streptococcus sanguinis SK36]
 gi|166231448|sp|A3CR11|RUVA_STRSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|125498950|gb|ABN45616.1| Holliday junction DNA helicase ruvA, putative [Streptococcus
           sanguinis SK36]
          Length = 196

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++  S  +        +   +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVAAGSPAESKAPVQTADNQEL-------EEAMEAMLALGYKAAE---- 168

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|56751811|ref|YP_172512.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC
           6301]
 gi|81301107|ref|YP_401315.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC
           7942]
 gi|81561725|sp|Q5N128|RUVA_SYNP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123769196|sp|Q31KU1|RUVA_SYNE7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56686770|dbj|BAD79992.1| holliday junction DNA helicase RuvA [Synechococcus elongatus PCC
           6301]
 gi|81169988|gb|ABB58328.1| Holliday junction DNA helicase subunit RuvA [Synechococcus
           elongatus PCC 7942]
          Length = 207

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G++ G+ +      +L+DVQGV Y +  P R+L  L   G    +F    +R+D
Sbjct: 1   MIGYLQGSLAGVRKQSGRLLLLLDVQGVGYEVQTPARSLVELPAAGQSLQVFTHLQVRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q  LFGFL   +R  F  L SV G+G ++ + +L  ++  ELV++I+  N++++++ PG+
Sbjct: 61  QWLLFGFLQMAERDLFRQLISVSGIGPQLGLALLDSLSLAELVQAIVAGNTRLLSRTPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R+  EL+ K            S      A +        +    L+ LGY   +
Sbjct: 121 GAKTAERLALELRSKLAEWREEAGLLPSATAAPIAAV------QEDVEMTLLALGYNNRE 174

Query: 177 ATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
              A+ ++ ++   ++       IR A+  +S
Sbjct: 175 ILQALTAIAQENLVQSGQPAEDWIREAIAWLS 206


>gi|282897835|ref|ZP_06305832.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9]
 gi|281197319|gb|EFA72218.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9]
          Length = 214

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+         + ++V G+ Y +Y P R  + L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVTHIFTHYQIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+G  +A+ ++  +   ELV++II  N+ ++ Q PG
Sbjct: 61  ELPILYGFSSPAERDLFRHLLSVTGIGTAMAISLIDTLELPELVQAIISGNTIMLIQTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A R+  ELKGK +         ++            P+        L  LGY   
Sbjct: 121 VGKKTAERLCLELKGKLVEWRKSAGFFVATGGPP-------PAILEEVQMTLFALGYTPH 173

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207
           + + A+  + +       A     I+ A+  +S 
Sbjct: 174 EVSHALHVISEDIGLPKNAYPEDWIKQAIAHLSS 207


>gi|254410540|ref|ZP_05024319.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC
           7420]
 gi|196182746|gb|EDX77731.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC
           7420]
          Length = 210

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 15/215 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHM 53
           MI  +KG +  + +       ++++V  + Y +    R LS   +IG      +F    +
Sbjct: 1   MISYLKGTVATIQKGNGNRVTLILEVNQIGYEVQIT-RQLSQEVQIGSEQVVQVFTHLQI 59

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R+DQ  L+GF S  +R  F  L SV G+GA++A+ ++  +    LV++I+  N++ +A+ 
Sbjct: 60  REDQQILYGFASAAERDLFRQLVSVSGIGAQLAIALIDTLGLQNLVQAIVTGNTRTLAKT 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+  K A RI  ELK K            + V    +     P+   +    L+ LGY 
Sbjct: 120 PGVGSKTAERIALELKTKLSEWRK-----FAGVETPASATGPSPAILEDVEMTLLALGYE 174

Query: 174 QDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
             + T A+ ++ +        +  + IR A+  +S
Sbjct: 175 TAEITQALNAISQDALLAKNPNAEEWIRRAIAWLS 209


>gi|256847966|ref|ZP_05553410.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715026|gb|EEU30003.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis
           101-4-CHN]
          Length = 200

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I   + DY++I+V GV + +         L +  D   ++V   +R D I L
Sbjct: 1   MYEYLLGTITEAHPDYLVIEVNGVGFRVQVANPYSYPLNE--DATKIYVYQAVRDDAISL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L +V G+G + A+ +L+      LVE+I   N   I + PGI  K 
Sbjct: 59  FGFHNAEEKRLFTKLLAVSGIGPKSALAILANPDHEGLVEAIANNNVSYITKFPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQ-----QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           ASRI+ EL+ K  SL          + +   N++   +    +            GY   
Sbjct: 119 ASRIIIELQDKVDSLLPTFDLQPQVEQLPTNNQDNPELADALAALKAL-------GYSAK 171

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                V S LK+E  ++ D Q +R  L  +S
Sbjct: 172 DVKK-VASSLKQEGGLSTD-QYLRKGLTLLS 200


>gi|332360160|gb|EGJ37974.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1056]
          Length = 196

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 98/206 (47%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG +  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIVSKITAKYIVLEVNSIGYILHV-ANPYAYSGRLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++   + +        +   +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQEL-------EEAMEAMLALGYKATE---- 168

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|330718512|ref|ZP_08313112.1| Holliday junction DNA helicase RuvA [Leuconostoc fallax KCTC 3537]
          Length = 196

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 17/208 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           M   I G I  +   Y++++  G+ Y +    P R      +I      ++E  +R+ +I
Sbjct: 1   MYEYINGLITLVEPAYLVVENNGIGYRLNIANPYRFTEKTSRI-----FYIEQIVRETEI 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF    +++ F  L  V G+G + A+ +L+  +A  L  ++   +   + Q PG+  
Sbjct: 56  SLYGFADASEKKLFNKLLDVSGIGPKSALAILASDSAIGLASAVENDDVSYLTQFPGVGK 115

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A +I+ +LKGK   L S        +  +Q H         +A+ AL+ LGY      
Sbjct: 116 KTAQQIILDLKGKLDDLVSAADAPEQSIVSKQDH-----RALDDALDALIALGYTSRD-- 168

Query: 179 TAVVSVLKKEKNIADDSQ-IIRLALRAI 205
             V  + KK   + D +   IR AL+ +
Sbjct: 169 --VKMIGKKLDGVVDTTDGYIRQALKLL 194


>gi|269925207|ref|YP_003321830.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788867|gb|ACZ41008.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 192

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+IE    D +++ V GV   ++ P   +  +G+IGD   L     +R+D + L
Sbjct: 1   MIASIKGHIEYKLNDGLIVQVGGVGLRVFTPSSMVREIGEIGDEVYLHTHLMVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +    + F LL SV GVG   A+ +LS  +  E+  +I  +N++  + IP I  K+
Sbjct: 61  YGFSTREQLRLFELLISVTGVGPNHALNILSSASVEEIQTAIAQENAQFFSLIPRIGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELKGK       VQ               +       +SAL+ LGY   +A  A
Sbjct: 121 AARIILELKGKVEPSGEAVQ--------------IISHKDEELVSALLALGYTLGEAQAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V S L  +K +  + ++ RLAL   S 
Sbjct: 167 VRS-LPTDKELPMEEKL-RLALSYFST 191


>gi|322386544|ref|ZP_08060171.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           cristatus ATCC 51100]
 gi|321269463|gb|EFX52396.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           cristatus ATCC 51100]
          Length = 204

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +    +     ++V   +R+D   L
Sbjct: 9   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSSLVNQETQIYVHQVVREDAQLL 67

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 68  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 127

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +   +         A+ A++ LGY   +    
Sbjct: 128 AQQMVLDLEGKVVAADGPAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 176

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 177 LKKIKKFFEGTTDTAENYIKSALKML 202


>gi|116070445|ref|ZP_01467714.1| DNA recombination protein, RuvA [Synechococcus sp. BL107]
 gi|116065850|gb|EAU71607.1| DNA recombination protein, RuvA [Synechococcus sp. BL107]
          Length = 214

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 12/214 (5%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       VL+   GV Y +    R    L +     TL++    R+D
Sbjct: 1   MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F LL  V GVG +  + +L      ELV +I   + K + Q  GI
Sbjct: 60  GSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPHELVAAISGGDLKRLCQAQGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  +L+    +   +  Q       E      +P    +  + L++LGY + +
Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLDPQPSLV---EGLASEQIPEAGEDVEATLISLGYDELE 176

Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206
              A+ ++         +  D    +R  L+ +S
Sbjct: 177 IRRAIRAIADGASGVPPSGTDQDGWLRSCLQWLS 210


>gi|300172987|ref|YP_003772153.1| Holliday junction DNA Helicase RuvA [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887366|emb|CBL91334.1| holliday junction DNA helicase RuvA [Leuconostoc gasicomitatum LMG
           18811]
          Length = 196

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 17/208 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +Y  Y++I D  GV Y ++   P R      +      ++VE  +R+++
Sbjct: 1   MYEYINGLITNIYPAYLVICDRSGVGYKLFVANPYRF-----EQNVESHVYVEQIVRENE 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I ++GF+ + ++  F  L +V G+G + A+ +L+   +  LV ++   ++  + Q PG+ 
Sbjct: 56  ITMYGFIDENEKILFNKLLNVSGIGPKSALAILASDDSVGLVNAVANDDATYLTQFPGVG 115

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +I+ +LKGK   L++ V               S      +A+ AL +LGY   + 
Sbjct: 116 KKTAQQIVLDLKGKLDDLAASVGMTTPVSQPNSNQALS------DALEALNSLGYSTKEI 169

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L  + +  D    IR AL+ +
Sbjct: 170 AK-LEKTLAAKHDTTDG--YIRSALKLL 194


>gi|118586981|ref|ZP_01544413.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118432603|gb|EAV39337.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 194

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I+ +   YV IDV G+ + ++ P           D  T+F E  +R ++I L
Sbjct: 1   MYDFLTGIIKTITAGYVGIDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNEISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G + A+ +++      L+ ++     K + + PGI  K 
Sbjct: 58  YGFKTVEERNLFQKLLNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK    S  +            ++    +   +A++ALV LG+   +    
Sbjct: 118 AQQIVLDLKGKLGDFSKNI--------APMKNLLENSAELDDALAALVALGFSSKEVNK- 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L     +  D+  I+  L+ +
Sbjct: 169 INPKLASLGELTTDA-YIQKGLKLL 192


>gi|313897511|ref|ZP_07831054.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2]
 gi|312957881|gb|EFR39506.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2]
          Length = 212

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     D ++I+  G+ Y +Y        L        L+   H+R+D I L
Sbjct: 20  MIAFIKGIIHSYSNDSLIIENNGIGYRVYVANPMAVRLNA---EVILYTYQHVREDAITL 76

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F+ L SV+GVG + A+G+L    A  ++ +I   + K +  +PGI  K 
Sbjct: 77  FGFTTMEEHDLFLQLISVKGVGPKTALGMLGVCPARNMIAAIESNDVKTLKGLPGIGAKT 136

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +   + ++                    ++A+ AL  LGY   +    
Sbjct: 137 ASQIVLDLKGKLVEEVTELE-------------VKENEQLLDALEALKALGYKNAE---- 179

Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206
           + S+ K+          Q IR  L  ++
Sbjct: 180 LNSIKKELGTLEAMTSDQYIRKGLGILA 207


>gi|313124267|ref|YP_004034526.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280830|gb|ADQ61549.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 197

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L
Sbjct: 1   MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F  L  V G+G + A+ +++      L  +I       + + PGI  K 
Sbjct: 58  YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +L+GK  +  +        +  E   + S+     +A+ AL  LGY Q +    
Sbjct: 118 AAQIVLDLRGKMGNYVA------ENLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LKK   ++ D + I+  L  +
Sbjct: 171 IKPKLKKLPEMSAD-EYIKQGLGLL 194


>gi|15806292|ref|NP_294998.1| Holliday junction DNA helicase RuvA [Deinococcus radiodurans R1]
 gi|20455276|sp|Q9RUV7|RUVA_DEIRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|6459015|gb|AAF10840.1|AE001974_5 Holliday junction binding protein [Deinococcus radiodurans R1]
          Length = 201

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  + E   ++   GV Y + CP   L+ L K G+         +R+D   L
Sbjct: 1   MIAYLSGVVREVREGSAVVVAGGVGYEVQCPAGMLARL-KPGEAAEFSTRFIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF      + F LL SV GVG ++ + +LS +  + L   +I  + K+++ + G+  K 
Sbjct: 60  FGFPDADHLKLFDLLTSVSGVGPKLGLALLSAMPVSALAAGLIGGDVKLLSSVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  EL  K       +    S     +       +   +A+ AL+ LG+ + Q   A
Sbjct: 120 AERLALELSSKVPE---HLAAAASGAAGGKRPARVSSTAGHDAVDALLALGFREAQVRAA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L  +   A    +IR AL  +
Sbjct: 177 VAELLGADPE-ASADTLIRKALGRL 200


>gi|227484942|ref|ZP_03915258.1| possible crossover junction endoribonuclease subunit A
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227237097|gb|EEI87112.1| possible crossover junction endoribonuclease subunit A
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 196

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+++ + E+  +I+   + Y I   + +LS + +I +   ++    +R+D I L
Sbjct: 1   MISYIKGDVKAINEEGFIIETNNIGYYINSTLTSLSNI-QINNEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  + + F+LL SV  +G ++A+G+LS I+A E+  +I+  +   +    GI  K 
Sbjct: 60  YGFYSKDELEMFLLLISVSSIGPKIAIGMLSSISADEIKLAIVNNDIDKLTDAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++      +  VN  + +   +      A  AL NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMAIPDLDKVEKVNPVKNNDIEV------AREALKNLGYMENDVARV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   + ++     +I+ +L+ +
Sbjct: 174 LNELKDTDLSL---EGLIKESLKRL 195


>gi|332712357|ref|ZP_08432284.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L]
 gi|332348831|gb|EGJ28444.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L]
          Length = 211

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 14/215 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHM 53
           MI  +KG +  + +       +++DV  + Y I    R    L          +F    +
Sbjct: 1   MISYLKGTVASIQKSTGNRVTLILDVNYIGYEIQITRRLSQELPVALSEKTVQIFTHLQI 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R++Q  L+GF S  +R  F  L SV G+GA++A+ +L  +    LV++I+  N + +++ 
Sbjct: 61  REEQQVLYGFASAAERDLFRQLVSVNGIGAQLAIALLDTLGLPNLVQAIVTGNIRALSKT 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+  K A RI  ELK K      V     S V    +     P    +    L+ LGY 
Sbjct: 121 PGVGSKTAERIALELKTKLAQWHKV-----SEVESPLSANGLSPGIQEDVEMTLLALGYE 175

Query: 174 QDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
            D+   A+ ++ +        +    IR A+  +S
Sbjct: 176 NDEIAQALHAISEDTQVAKSKNAEDWIREAIAWLS 210


>gi|157150589|ref|YP_001451298.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189045776|sp|A8AZT8|RUVA_STRGC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157075383|gb|ABV10066.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 196

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 97/206 (47%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++   + +        +   +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQEL-------EEAMEAMLALGYKATE---- 168

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|332799127|ref|YP_004460626.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Tepidanaerobacter sp. Re1]
 gi|332696862|gb|AEE91319.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Tepidanaerobacter sp. Re1]
          Length = 193

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M+  ++G +  +  D+ +ID+ G    +   + T + +  ++G+   L+ +  +R D + 
Sbjct: 1   MLDYLEGVLVHVEPDFAIIDIGGWGLKLNISMFTYNKIKTELGNKLKLYTQMVLRDDAVE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF   ++RQ ++LL  V G+G + A+ +LS +    L  SI+ ++ K + ++PGI  K
Sbjct: 61  LFGFFDVVERQAYVLLNKVSGIGPKAAISILSLMDVARLKTSILSEDVKDLVKVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ ELK +   L     + M              +  I A  AL++LG+   +   
Sbjct: 121 TAQKIIIELKDRIKDLPVTSDEGM-------------YNSIIEAREALISLGFNPMEIQL 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +       KN      II+ AL+ +S
Sbjct: 168 VLDE--DSVKNNDSVEDIIKCALKKLS 192


>gi|218441378|ref|YP_002379707.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424]
 gi|226725437|sp|B7K970|RUVA_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218174106|gb|ACK72839.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424]
          Length = 209

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGL-----YEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMR 54
           MI  +KG    +       + ++++V  + Y I  P R    L  +      +F    +R
Sbjct: 1   MINYLKGKTTQILKTPSNRNILILEVNHIGYEIQIPSRLARNLSLEEDQIVQIFTHLQIR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +D +R  F  L ++ GVG + A+ ++  +    L+ +I+  + K +++ P
Sbjct: 61  EDQQILYGFSTDSERDLFRQLININGVGTQTAIALIDTLGIEALINAIVTNDVKTLSKTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A RI  ELK K       +      +    +               L+ LGY  
Sbjct: 121 GVGPKTAERIALELKSKLSQWEQAI-----ALKTPVSVGVPSREILEEVEMTLLALGYTD 175

Query: 175 DQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206
           ++   A+ ++ +    + +    + ++ A+  +S
Sbjct: 176 EEIDQAISAISQDNLLLKNPHVEEWLKSAIAWLS 209


>gi|258645438|ref|ZP_05732907.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470]
 gi|260402789|gb|EEW96336.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470]
          Length = 201

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG    + +++  I+  G+ Y ++    +   +  +G    L     +R+D I L
Sbjct: 1   MIGYIKGKATVVSKEFCFIEAGGIGYRVFISEMSRQKI-HLGAPVRLLTYMAVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F++L SV  +G +VAMG+LS +   + V SI  +N  V+ ++PG+  K 
Sbjct: 60  YGFLTQEEYDLFLILISVSKIGPKVAMGILSVMEPADFVLSIRNRNLSVLTKLPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K    +   + D+       A        A +A   L  LGY   +    
Sbjct: 120 AERLLVELKDKVGDFA---EGDIDEPESLAAGKPDESGIAADAAKYLRALGYEDTEIQPV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +  + K   D S ++  ALR 
Sbjct: 177 LKKLSIEYK---DVSPLVSAALRE 197


>gi|303249145|ref|ZP_07335385.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans
           JJ]
 gi|302489470|gb|EFL49417.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans
           JJ]
          Length = 202

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +    + Y ++    GV Y +  P    + L   G   +LFV T +R+D   
Sbjct: 1   MIGYIEGRVVVRRDRYAIVLTPGGVGYELELPGPVAASLPAPGGQASLFVHTVVREDAFE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  DR+ F +L  +  +G + A+ +LSR TA +L   +   +   + Q+ GI  K
Sbjct: 61  LFGFATIEDRETFRILIGITKLGPKTALAILSRYTADDLARIVATADLDALTQVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL  K         +  +                 + ++ L NLGY +  A  
Sbjct: 121 SAQRILIELTYKL--------EGQAATAAAVTAPIPGGGVLADVVAGLTNLGYPEADARR 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
              +VL  E ++ D +  +R AL+ ++ 
Sbjct: 173 VGTAVLDDEPDL-DVAGALRQALKRLAS 199


>gi|218888287|ref|YP_002437608.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|226725439|sp|B8DNJ8|RUVA_DESVM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218759241|gb|ACL10140.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 202

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  +  +  ++    GV Y ++ P  TLS L + G      V T +R+D + 
Sbjct: 1   MIAYVEGRVAEISGNACVVVTEGGVGYEVHLPAHTLSRLPERGGQVAFHVRTEVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ FM+L ++  VGAR A+ +LS+    +L   ++  +   + ++ GI  K
Sbjct: 61  LFGFSTWDERQTFMVLTTISKVGARTALAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K                   A   +      +A++ L NLGY +D+A  
Sbjct: 121 TAQHIFLELKYKLKVEDL-------PAGLVLAGGAAPGGVFRDALAGLGNLGYLEDEAAP 173

Query: 180 AVVSVLKKEKNI 191
            +  VLK E ++
Sbjct: 174 VLKEVLKAEPDL 185


>gi|327467941|gb|EGF13431.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK330]
          Length = 196

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 97/206 (47%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGRLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +   +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVAADGPAESKAPIQTADNQEL-------EEAMEAMLALGYKAAE---- 168

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|313206325|ref|YP_004045502.1| holliday junction DNA helicase subunit ruva [Riemerella
           anatipestifer DSM 15868]
 gi|312445641|gb|ADQ81996.1| Holliday junction DNA helicase subunit RuvA [Riemerella
           anatipestifer DSM 15868]
 gi|315023191|gb|EFT36202.1| Holliday junction DNA helicase RuvA [Riemerella anatipestifer
           RA-YM]
 gi|325336230|gb|ADZ12504.1| Holliday junction resolvasome, DNA-binding subunit [Riemerella
           anatipestifer RA-GD]
          Length = 194

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ L   +++I+  GV Y +   + T      IG    ++ +  +R+D   L
Sbjct: 1   MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNTSKHF-SIGKESLIYTQQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL SV GVG   AM +LS +   E+ ++I+  NS V+ ++ GI  K 
Sbjct: 60  YGFSELKEKEMFNLLISVNGVGPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K +   +      + ++ +             ++SAL  LG  +  +   
Sbjct: 120 AQRIIIDLKDKVLHFGADESDISTVIDNK---------VKEESLSALEVLGIPKKMSEKL 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +LK+   I     +++  L+ I
Sbjct: 171 ANKILKQNPEIQ-TEDLVKQILKNI 194


>gi|297588495|ref|ZP_06947138.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia
           magna ATCC 53516]
 gi|297573868|gb|EFH92589.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia
           magna ATCC 53516]
          Length = 198

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  ++E+Y++++   + Y ++        +    D   ++ E   R+D   L
Sbjct: 1   MYSYIIGVITEVHENYIVLENNKIGYKVFITDFFRDNVSAF-DEYKVYTEFVEREDASIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F LL  V  +G + AM +LS +T  E   +II  + K++ Q PG+  K 
Sbjct: 60  YGFSSQKERDLFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K        ++D     K         S +  A  AL+ LGY ++     
Sbjct: 120 ASRIILELKEKI-------EKDFVPSEKPVTKEVKKSSDSEFAREALLQLGYFKNDVDAF 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + +    + +      I++ A++++  
Sbjct: 173 IEN---TDISGLSIEDIMKKAMKSLDS 196


>gi|325290232|ref|YP_004266413.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965633|gb|ADY56412.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 200

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  + +D +++DV GV Y++  P   LS + +IG    L     +R+D + L
Sbjct: 1   MIALLRGTVWEMDKDKLIVDVNGVGYLLNVPSGKLSSV-RIGQEVVLHTYLLVREDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    D++ F+ L SV G+G + A+ +LS  ++ +++ +++ +N  +  +I GI  KI
Sbjct: 60  FGFADRQDKELFIKLLSVSGIGPKAALSILSSFSSVQIITALVQENHVMFTEISGIGSKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K                +  A   S P      + AL+ LG+   +  TA
Sbjct: 120 ARRLTLELKEKFKDYHLE-----GLTGETFAGSESGPGSEPGIMEALLALGFTPGETRTA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V K E       + +R ALR ++
Sbjct: 175 VNAVGKLEG--LTFEEQLREALRLLA 198


>gi|296270037|ref|YP_003652669.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM
           43833]
 gi|296092824|gb|ADG88776.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM
           43833]
          Length = 206

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 14/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  +  +I+V G   +++C   TL+ L ++G+   L     +R+D + L
Sbjct: 1   MIASVAGKVAAIGPETAVIEVGGFGVLVHCTPATLAGL-RVGEPARLATALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R  F  L +V GVG R+A+ +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFASDDERAIFESLLTVNGVGPRLALAMLAVHSPNALRTAVASGDVKALTMVPGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM EL+ +            +              +     + LV LGY    A  A
Sbjct: 120 AQRIMLELRDRL-------GPARATAAGMPDGRGGPSPWREQVHAGLVGLGYSARDADEA 172

Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAIS 206
           + ++  + +         + + +++ ALR +S
Sbjct: 173 IAAIAHEAEAAEAAGREPEIAALLKSALRVLS 204


>gi|300774281|ref|ZP_07084145.1| crossover junction ATP-dependent DNA helicase RuvA
           [Chryseobacterium gleum ATCC 35910]
 gi|300506925|gb|EFK38059.1| crossover junction ATP-dependent DNA helicase RuvA
           [Chryseobacterium gleum ATCC 35910]
          Length = 194

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ L   Y +I+VQGV Y +   + T   L  +     LF++  +R+D   L
Sbjct: 1   MIFSLQGIVQELTPTYAVINVQGVGYYVGISLMTSQTLV-LNQQTFLFIQQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F LL SV GVGA  A+ +LS ++  E+  +I+  NS +I +  GI  K 
Sbjct: 60  FGFNTRSEKEMFNLLISVNGVGAVSALILLSTLSLDEIASAILSGNSALIQKAKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K    S                +         ++SAL  LG  +  +   
Sbjct: 120 AERIIVDLKDKVQKYSD---------PNANISVMVDNKIKEESLSALEVLGIPKRTSEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              ++K+  +I    ++++  L+ I
Sbjct: 171 ADKIIKQNPSI-SVEELVKQILKNI 194


>gi|269837708|ref|YP_003319936.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM
           20745]
 gi|269786971|gb|ACZ39114.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM
           20745]
          Length = 193

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I   Y   VLID+ G+   +     T+  LG++GD   L+    +R+D I L
Sbjct: 1   MISGVRGPIHAKYPGIVLIDLHGLIIRVLTSQTTVDDLGEVGDHAELYTHLRVREDDITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + Q F LL SV GVG RVA+ +LS     E+   I  ++   ++++PGI  K 
Sbjct: 61  YGFSTPEELQLFELLTSVTGVGPRVALNILSSARPEEVHRVIESEDIAALSRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL+GK  + +      ++  + E                  + LGY   +A  A
Sbjct: 121 ASRIILELRGKLPAPAGAQAPALAAADAEAMEAL-------------MALGYTAPEARDA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + + E       + +  AL+ ++
Sbjct: 168 LARIERHEGQ--TVEERVYAALQTLA 191


>gi|227499581|ref|ZP_03929688.1| crossover junction endoribonuclease subunit A [Anaerococcus
           tetradius ATCC 35098]
 gi|227218340|gb|EEI83594.1| crossover junction endoribonuclease subunit A [Anaerococcus
           tetradius ATCC 35098]
          Length = 195

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G++  + E+  +I+   + Y+IY  + TLS L +I     ++    +R+D I L
Sbjct: 1   MISYIIGHVRNIDEESFIIENNNIGYLIYSSLATLSNL-EINSEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F LL SV  +G + AMG+LS I+  E+  +++  +   +    GI  K 
Sbjct: 60  FGFFTKDELEMFSLLTSVSTIGPKTAMGILSSISVNEIKTAVVNNDIDKLTLAKGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   +S V  +++   +        +      A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMSFVPVENIKQDD-------MLNEDFEVAKEALLNLGYQKNDVDRV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   + ++     +++ +L+ +
Sbjct: 173 LSELKDTDLSL---EGLVKESLKRL 194


>gi|326803735|ref|YP_004321553.1| Holliday junction DNA helicase RuvA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651259|gb|AEA01442.1| Holliday junction DNA helicase RuvA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 203

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L  + V+++  G+ Y IY P        + G    +++   + QD IRL
Sbjct: 2   MYQYIKGLLVDLTSEAVVVETAGLAYYIYFP-NPYRLSDQKGQQVQVWLYQAVSQDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L SV G+G + A+ +L+       + +I  +N K + + PG+  K 
Sbjct: 61  YGFFDQAEKQLFLQLISVSGIGPKSALSILAYGDQAGFIAAIESENVKFLTKFPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+ K   L S   + +    +  +         I   +AL +LGY + +    
Sbjct: 121 AQQIILDLQSKLSRLKS---EALPADQEVISDQSESSQMMIELEAALNSLGYAKREIDQV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +         + + +  IR+ALR I
Sbjct: 178 IKK--GDFSEVDNTADAIRVALRYI 200


>gi|226226039|ref|YP_002760145.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27]
 gi|259495644|sp|C1A615|RUVA_GEMAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226089230|dbj|BAH37675.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27]
          Length = 197

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI +++G I     D V ++   GV Y    P+     L   G   TL     +R+D   
Sbjct: 1   MISQVRGTIMHRELDRVEIMTASGVAYECLIPLSVFESLPSEGQTVTLHTHLVVREDAWH 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  L   +GVG  +A+G+LS +T   +V ++  ++   + ++P +  K
Sbjct: 61  LYGFAHAYERAVFQKLLHAKGVGPALALGILSALTPDRVVRALHEKDVLTLMRVPRVGRK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +L  K              V    A   +      +A+ AL+ LGY Q +A  
Sbjct: 121 KAEQIILDLADKI-----------DAVGPAPATGTAPSPLGDDAVRALIALGYNQTEADR 169

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AV +V++      D S ++R AL  ++ 
Sbjct: 170 AVRAVVESGAP-KDVSSLVRGALSRLTA 196


>gi|325479262|gb|EGC82358.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 195

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I  + ED  +I+   + YII+  + TL+ + +I +   ++    +R+D I L
Sbjct: 1   MISYIIGQIRAINEDNFVIENNSMGYIIFSSLTTLTNI-EINNEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S  + + F+ L SV  +G + A+G+LS ++  E+  +I+  +   +    GI  K 
Sbjct: 60  FGFISKDELEMFLHLTSVSTIGPKTALGILSSLSVNEIKNAILNNDINKLTVAKGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++ V  +           +  +      A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMNFVPIEKTE-------DVSVVNEDFDVAKEALLNLGYQKNDIDRV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           ++ +   E ++    ++++ +L+ +
Sbjct: 173 LLELKDNELSL---EELVKESLKRL 194


>gi|325697267|gb|EGD39153.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK160]
          Length = 196

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 97/206 (47%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDTELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +   +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVAADGPSESKAPVQTADNQEL-------EEAMEAMLALGYKVAE---- 168

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|308235709|ref|ZP_07666446.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis ATCC 14018]
 gi|311114741|ref|YP_003985962.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella
           vaginalis ATCC 14019]
 gi|310946235|gb|ADP38939.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella
           vaginalis ATCC 14019]
          Length = 212

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 9/211 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G IE +     LI V GV Y +Y P   L+ L + G    ++    + QD + L
Sbjct: 1   MIGMLNGVIESVDSRCALICVSGVGYEVYMPSSDLAALHE-GQDVKVYTSLQVSQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S   ++ F+ +Q  V GVG +VA+ +LS +    L+++I   +   ++  PG+  K
Sbjct: 60  YGFTSMPAKRIFLQIQQKVSGVGPKVALSLLSTLNVNRLLQAIADGDITALSSAPGLGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ ELKG +I +S + + D S  +K           +   +  L++LG+ Q  A  
Sbjct: 120 GAQKIVLELKG-SIDVSQLNEDDTSKDSKSYKKEFDESGISK-VVDGLMSLGWKQSDAQR 177

Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205
           AV +V   EK     + +D   ++R+AL A+
Sbjct: 178 AVENVCNSEKIALPISDSDMPNVLRMALAAL 208


>gi|154508894|ref|ZP_02044536.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798528|gb|EDN80948.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC
           17982]
          Length = 207

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 9/204 (4%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +  +  D++ I V G+ + ++      +         T+F    +R+D + L+
Sbjct: 8   ISILRGTVASVGLDHIDIVVGGIGFRVHVTPA-FAQGASRDQEMTVFTSMIVREDSMTLY 66

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF S  +R  F  + SV G+G ++A+  L+ +   +L  ++  Q+   + +IPG+  K A
Sbjct: 67  GFESADERDVFTKMLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSTLQRIPGVGKKSA 126

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R+  E+  K  +        +       A   +  + A    +ALV LG+ + QA  A+
Sbjct: 127 QRMALEIGDKLGT-----PAALPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +       +D   ++R AL  +
Sbjct: 182 EKLAGSGLGASD---MLRAALVTL 202


>gi|298242494|ref|ZP_06966301.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM
           44963]
 gi|297555548|gb|EFH89412.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM
           44963]
          Length = 196

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G ++  + D+V + V G    ++ P  T+S LG+ G    L    HMR+D I L
Sbjct: 1   MITSIHGILQTCHPDHVTVRVGGFGIQVFAPATTISGLGETGTEVELHTHFHMREDGIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +++DR  F  L +V GVG RVA+ +LS + A  L ++I  ++ + +    G+  ++
Sbjct: 61  YGFATEMDRDAFEQLIAVNGVGPRVALSLLSVMDAPALYKAIADEDQQRLGLAKGVGKRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++  LKGK  S+          V                 + AL+ LG+   +A  A
Sbjct: 121 AAQLILALKGKLPSI----------VPAGTISGVPSGKLQTEVLEALMGLGFSSAEAQAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + +++       Q +  ALR  S
Sbjct: 171 IAKIPQEQ--AMTLEQQVTYALRTFS 194


>gi|227510189|ref|ZP_03940238.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513117|ref|ZP_03943166.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC
           11577]
 gi|227083692|gb|EEI19004.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC
           11577]
 gi|227190394|gb|EEI70461.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 198

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +   Y+++ V G+ Y+IY        + +      ++V   +    I L
Sbjct: 1   MYEFMDGQIVDITPAYIVLLVNGIGYLIYTADPYRFNVDQ-NKTIRVYVYQSVSDSAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F  L +V G+G + A+ +L+    + LV +I  ++ K + + PG+  K 
Sbjct: 60  YGFYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVSAISNKDVKFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK   LS +VQ        EQ           +AISAL  LGY   Q   A
Sbjct: 120 AQQIILDLQGKVGDLSQIVQARSGQSASEQ------SDELRDAISALEALGYSAKQID-A 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L K+K +  D + + L L+ +
Sbjct: 173 IRLELGKDKALTTD-EYLSLGLKLL 196


>gi|259502857|ref|ZP_05745759.1| crossover junction endoribonuclease subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169224|gb|EEW53719.1| crossover junction endoribonuclease subunit A [Lactobacillus antri
           DSM 16041]
          Length = 197

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +   Y+++DV GV Y +                  +FV   +R D I L
Sbjct: 1   MYEYLTGTISIVAPQYIVVDVHGVGYKLLV-ANPYRFHEDPATAVRVFVYQAVRDDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++Q FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFSDQAEKQLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNISYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LK K  + +S    D    +       +    A+ A+      GY   +    
Sbjct: 120 ASQIVLDLKDKLAAATSGSLFDQQTASDPANPALADALAALKAL------GYKDRE---- 169

Query: 181 VVSVLKKEKN-IADDSQIIRLALRAIS 206
           V  + K+         + +R ALR ++
Sbjct: 170 VKKIGKQLGTQQQSTDEYLRQALRLLN 196


>gi|115380771|ref|ZP_01467652.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823011|ref|YP_003955369.1| holliday junction ATP-dependent DNA helicase ruva [Stigmatella
           aurantiaca DW4/3-1]
 gi|115362222|gb|EAU61576.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396083|gb|ADO73542.1| Holliday junction ATP-dependent DNA helicase RuvA [Stigmatella
           aurantiaca DW4/3-1]
          Length = 203

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +IDV GV Y +     TL  L   G    + V T +R+D   L
Sbjct: 1   MIAALRGTVAEKDLEEAIIDVAGVGYRVAFSTLTLGKLPAEGQPVHVRVRTVVREDAFEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  + + F+LL SV  VG R+A+ VLS +   EL  ++       + +I G+  K 
Sbjct: 61  FGFLSKAEEEMFLLLTSVSHVGPRLALMVLSGMEVAELAVALGKGEIARLTKIHGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L       +  V K  + +        + +SAL+NLGY   QA  A
Sbjct: 121 AERLVLELREKVKELH------LEAVAKGASSVSVPAGPKADLVSALLNLGYKAPQAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                ++    A    + R AL+ +
Sbjct: 175 AELAGERLGPEAAFQALFREALKVL 199


>gi|313892063|ref|ZP_07825661.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII
           345-E]
 gi|329120927|ref|ZP_08249559.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister
           micraerophilus DSM 19965]
 gi|313119515|gb|EFR42709.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII
           345-E]
 gi|327471386|gb|EGF16837.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister
           micraerophilus DSM 19965]
          Length = 200

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG +    +    ++  G+ Y I+        L ++G+   L+    +R+D I+L
Sbjct: 1   MIGYIKGTVTTFEKQACFVETSGIGYRIFISDIDKEKL-RVGENIKLYTYMAVREDAIQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+       F++L SV  +G +VAMG+LS I       +I  ++  V+ ++PGI  K 
Sbjct: 60  YGFIEKESYDLFLILISVSKIGPKVAMGILSSIDINSFCNAIQKKSISVLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K          ++  V  +     S       A+  L +LGY + +    
Sbjct: 120 AERLVLELKDKI------AVSNVENVESDTESSTSGTVPENEAVMILKSLGYQEYEIMPV 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           + S+ K+ K+     +++R  L
Sbjct: 174 LKSIKKEFKDPM---ELVRAVL 192


>gi|296111820|ref|YP_003622202.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU
           11154]
 gi|295833352|gb|ADG41233.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU
           11154]
          Length = 196

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 100/208 (48%), Gaps = 17/208 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +Y  Y++I D  GV Y ++   P R      +      ++VE  +R++ 
Sbjct: 1   MYEYINGLITNIYPAYLVICDRSGVGYKLFAANPYRF-----EQNVESHVYVEQIVREND 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I ++GF+ + ++  F  L +V G+G + A+ +L+   AT LV ++   ++  + Q PG+ 
Sbjct: 56  IAMYGFIDENEKILFNKLLNVSGIGPKSALAILASDDATGLVNAVANDDASYLTQFPGVG 115

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +I+ +LKGK   L+      +S   +      +      +A+ AL +LGY   + 
Sbjct: 116 KKTAQQIVLDLKGKLDDLA------ISAGVQGPTREQNTNQALSDALEALESLGYSAKEV 169

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L  +++  D    IR AL+ +
Sbjct: 170 AK-LEKTLASQQDTTDG--YIRSALKLL 194


>gi|302335491|ref|YP_003800698.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM
           7084]
 gi|301319331|gb|ADK67818.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM
           7084]
          Length = 209

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  +   +V++DV G+ Y +     T + L  +G+   TL     +++  + 
Sbjct: 1   MIVQLTGTLVEVLPTHVIVDVGGIGYELGVSATTAASLPAVGEAGVTLLARMLVKESAVE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L  V GVG ++A+ VLS  +   L   ++ Q++  +A +PG+  K
Sbjct: 61  LYGFASREERAVFDRLVGVSGVGPKLALAVLSTFSPASLATVVVTQDATRMATVPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A R++ EL+      + +     MS          +  S   +A SAL+ +G+   +A 
Sbjct: 121 KAQRLLMELQDVFTRDTELRGLVGMSEPAPRSPLANTAESVQSDATSALLAMGFTPQEAE 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+     ++       + I  ALR +
Sbjct: 181 LALRG--HEDAGALTVEKAISYALRHL 205


>gi|171742914|ref|ZP_02918721.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC
           27678]
 gi|171278528|gb|EDT46189.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC
           27678]
          Length = 202

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           + G +E +     LI+V GV Y    P   L+ +   G    ++   ++ QD I LFGFL
Sbjct: 2   LHGRVESVDMSSALIEVGGVGYETRMPSADLASMHA-GQEVKVYTSLNVSQDAITLFGFL 60

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K A +I
Sbjct: 61  TPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKGAQKI 120

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVS 183
           + ELKG           D+S +    + I           +  L++LG+ Q  A  AV  
Sbjct: 121 ILELKG---------SIDLSQIETAASVISRPEDTGSEQVVEGLISLGWRQQDALHAVQE 171

Query: 184 VLKKEK-----NIADDSQIIRLALRAI 205
           V +        +  D  ++++LAL ++
Sbjct: 172 VCRSNDIATPLSNEDVPRVLKLALTSL 198


>gi|145594353|ref|YP_001158650.1| Holliday junction DNA helicase RuvA [Salinispora tropica CNB-440]
 gi|189045768|sp|A4X5X2|RUVA_SALTO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145303690|gb|ABP54272.1| Holliday junction DNA helicase subunit RuvA [Salinispora tropica
           CNB-440]
          Length = 200

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +++V GV   + C   T++ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGVVTATGPDHAVLEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +  F LLQ+  GVG R+A  VL+      +  +I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKALFELLQTASGVGPRLAQAVLAVHPPEAVRAAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDRIGPV---------PVGADSAAGVTTGAWPEQVRQALVGLGWTAAQADQA 170

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           V +V +  +  +     ++R A+R +
Sbjct: 171 VTAVAETVDGAVPPVPVLLRQAIRLL 196


>gi|320547648|ref|ZP_08041933.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           equinus ATCC 9812]
 gi|320447723|gb|EFW88481.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           equinus ATCC 9812]
          Length = 197

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVVEAGGLGYIINV-ANPYSFSDLMNQDVQIYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + + + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179
           A +++ +L GK          D+S  N   +   ++ +     A+ AL+ LGY   +   
Sbjct: 120 AQQVVLDLAGKF--------ADVSMENGLASQAKAVANEQLEEAMEALLALGYKAAE-LK 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +    +     A   Q I+ +L+ +
Sbjct: 171 KIRKFFEGTNETA--EQYIKSSLKML 194


>gi|302389938|ref|YP_003825759.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani
           DSM 16646]
 gi|302200566|gb|ADL08136.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani
           DSM 16646]
          Length = 192

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 17/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           M+  I+G +  +  ++ ++DV G+ +  +  + T + +  +      LF   H++++   
Sbjct: 1   MLDYIRGRLRDIGPNFAILDVAGLGFRCFISLNTYNKIKLLKNSKVLLFTCLHVKEEGAE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    +R+ F+LL  V GVG RVA+ +LS +    L   I+ ++ K +  +PGI  K
Sbjct: 61  LFGFSELHEREAFILLNKVSGVGPRVALSILSWLEPKRLKSVIMSEDVKTLTSVPGIGNK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ ELK K  +L              +    +  +    A  AL+ LG+   +   
Sbjct: 121 TAQKIIFELKDKIKNL------------PVETVSQTEQAALCEARDALLALGFSIGEVQR 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +           +II  ALR I+
Sbjct: 169 VLNEI----GTATTVEEIISNALRLIA 191


>gi|269122262|ref|YP_003310439.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC
           33386]
 gi|268616140|gb|ACZ10508.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC
           33386]
          Length = 205

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +     DYV ++V G+ Y I+  ++T   L +  D   LF+ T++++D   L
Sbjct: 1   MFEYIRGELTVKKIDYVALEVNGIAYKIFISLKTYDMLTE--DTEKLFIYTNVKEDDFSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R+ F  L S+ GVG ++ + +LS     E+++ +I +N+K++ ++PG+  K 
Sbjct: 59  YGFKTESERELFKALVSISGVGPKLGLAILSTFNTQEVIDIVIEENAKLLVRVPGLGQKK 118

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +++ +LK K   L+ + + QD S                 +   AL +LGY     + 
Sbjct: 119 AQKLIVDLKDKVKKLNVIGIAQDGSHDTASSVSSTKALIMKEDLKLALESLGYSNADVSK 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            +    ++ +        IR  L+ I  
Sbjct: 179 WIKD--EEIEKYERVEDAIRDILKKIQS 204


>gi|6729740|pdb|1BVS|A Chain A, Ruva Complexed To A Holliday Junction.
 gi|6729741|pdb|1BVS|B Chain B, Ruva Complexed To A Holliday Junction.
 gi|6729742|pdb|1BVS|C Chain C, Ruva Complexed To A Holliday Junction.
 gi|6729743|pdb|1BVS|D Chain D, Ruva Complexed To A Holliday Junction.
 gi|6729744|pdb|1BVS|E Chain E, Ruva Complexed To A Holliday Junction.
 gi|6729745|pdb|1BVS|F Chain F, Ruva Complexed To A Holliday Junction.
 gi|6729746|pdb|1BVS|G Chain G, Ruva Complexed To A Holliday Junction.
 gi|6729747|pdb|1BVS|H Chain H, Ruva Complexed To A Holliday Junction
          Length = 203

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  G+ Y +      L+ L + G    L     +R+D + L
Sbjct: 1   MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLNQ-GSQARLVTAMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F+ L SV GVG R+AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  K   + +      +  +                + ALV LG+   QA  A
Sbjct: 120 AERIVLELADKVGPVGASGLTVGTAADGNAVRGS--------VVEALVGLGFAAKQAEEA 171

Query: 181 VVSVLKKE---KNIADDSQIIRLALRAI 205
              VL  E         S  +R AL  +
Sbjct: 172 TDQVLDGELGKDGAVATSSALRAALSLL 199


>gi|229814935|ref|ZP_04445273.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM
           13280]
 gi|229809422|gb|EEP45186.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM
           13280]
          Length = 207

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 1/190 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +IDV G+ + +     T S L ++G    L+    +R+D   L
Sbjct: 1   MISILNGTLIEATAGSAVIDVNGIGFELGISATTASSLAQVGSPTRLYTRMVVREDSCTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV GVGA++A+ +LS  T  EL   +++++ K +A +PG+  K 
Sbjct: 61  FGFATKDERTMFDKLVSVSGVGAKLALAILSSFTVPELYTLVMMEDDKGMATVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179
           A R++ ELKG      S+       V    A   +    A  +A +AL+++G+   + T 
Sbjct: 121 AQRLILELKGVFEKDRSLAGSAAPTVPLPFAPAAAAAPSAIEDATAALLSMGFTAAEVTL 180

Query: 180 AVVSVLKKEK 189
           A+     K+ 
Sbjct: 181 ALDGYDGKDM 190


>gi|330936721|gb|EGH40906.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 119

 Score =  191 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKK 119


>gi|120403560|ref|YP_953389.1| Holliday junction DNA helicase RuvA [Mycobacterium vanbaalenii
           PYR-1]
 gi|166230573|sp|A1T883|RUVA_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119956378|gb|ABM13383.1| DNA recombination protein RuvA, domain I [Mycobacterium vanbaalenii
           PYR-1]
          Length = 195

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIAAVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGAEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L  V G+G  +A+G L+      L ++I   +   + +IP +  K 
Sbjct: 60  YGFADSDARNLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDVTALTRIPKVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  ++  L+ K  +         + V     H    P      + ALV LG+ Q QA  A
Sbjct: 120 AELLVLTLRDKVGT------STSAGVASAGGHGIRGP-----VVEALVGLGFAQKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  E      S + R AL  +
Sbjct: 169 TDKVLANEPEATTSSAL-RAALSML 192


>gi|220904537|ref|YP_002479849.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868836|gb|ACL49171.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 204

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 7/192 (3%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   + +  +LI   GV Y +  P  TLS L   G+   L+    +R+D + 
Sbjct: 1   MIAYLEGRLAETWGNTCLLITENGVGYAVALPAHTLSVLPGRGEHLALYTSLAVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F +L S+  VGAR A+ +LS     +L   +  ++   + ++ GI  K
Sbjct: 61  LFGFATFEERQTFEVLISISKVGARTALSILSIYRPEDLRRIVFEEDVMALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  +  ELK K          D+       +      S   + +  L NLGY +D+   
Sbjct: 121 TAQHVFLELKYKLK------VDDVPQAAVLASTGERPGSVFRDVLDGLANLGYAEDECAP 174

Query: 180 AVVSVLKKEKNI 191
            V  +L +E ++
Sbjct: 175 MVKKLLHEEPDL 186


>gi|167629898|ref|YP_001680397.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum
           Ice1]
 gi|167592638|gb|ABZ84386.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum
           Ice1]
          Length = 274

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 81/134 (60%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G + GL +D +L+DV GV Y ++ P   L+ L ++G    +    + R+DQ+ L
Sbjct: 1   MIAFLRGRLVGLGDDCLLLDVSGVGYRVFVPATMLASLPQVGRDILIHTFYYAREDQVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +  +F LL  V GVG +V +G+LS  +  E+  +II ++   + +IPGI  K 
Sbjct: 61  YGFLTEEELAFFRLLLEVSGVGPKVGLGILSAYSVVEVQRAIIAEDVLALTRIPGIGRKT 120

Query: 121 ASRIMTELKGKAIS 134
           A R++ EL+ K + 
Sbjct: 121 AQRLVIELRDKLLK 134



 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 128 LKG-----KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           LK           +S + +         A      S    A SAL  LGY  ++A  A+V
Sbjct: 189 LKDPSSDRHVPEGTSPLARRRKKAVPAGADRMWKTSPRDEAFSALQVLGYTANEARDALV 248

Query: 183 SVLKKEKNIADDSQIIRLALRAISC 207
                    AD    I+ ALR +  
Sbjct: 249 EAAALVPPDADVEAWIKGALRFLGS 273


>gi|162448567|ref|YP_001610934.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159149|emb|CAN90454.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 244

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 106/213 (49%), Gaps = 15/213 (7%)

Query: 2   IGKIKGNIEGLY-EDYVLIDVQGVCYIIYCPI------RTLSCLGKIG-DFCTLFVETHM 53
           IG++ G++     E  V++DV GV Y +  P+      R ++   K G D  TLFV TH+
Sbjct: 38  IGRLSGHVVEEGDEGTVVLDVSGVGYEVTVPLGAVGRARGIAANAKAGSDAITLFVHTHV 97

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R+D + L+GF +  DR  F +L  +  +G ++AM +LS + A EL   I  + +  +  I
Sbjct: 98  REDALLLYGFATREDRAAFRVLIGISSIGPKIAMAILSALGAGELAAVITRRETARLTAI 157

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+  K A R++ ELK K + L +      + ++   +   +  +      SAL  +GY 
Sbjct: 158 PGVGKKTAERLVLELKDKLVHLPA------APLSPAASPPVATGAKQDLLHSALTRMGYR 211

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +A  AV   L    + A    ++R AL  +S
Sbjct: 212 PAEAERAVT-ALGARVDSAPLGDLVRDALALLS 243


>gi|257784697|ref|YP_003179914.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469]
 gi|257473204|gb|ACV51323.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469]
          Length = 210

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 5/210 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  +     ++DV GV Y +     T + L + G+   T+     +R+D + 
Sbjct: 1   MIVQLTGTLVSVTPSVAVLDVNGVGYELGISASTAAALPQAGEAGVTVLTRMVVREDSME 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  +R  F  L+++ GVG ++A+ VLS  T  +L   +   +   +  + G+  K
Sbjct: 61  LFGFASREERALFDRLRAISGVGPKLALSVLSTFTPQQLAVIVATNDGNRLKSVSGLGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQ--QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ EL       + + Q     S  +       ++ S    AI AL+ +G+   +A
Sbjct: 121 KAERLIIELSDVFAKDTELKQLVGLTSPTDFASIPKPTVTSVESEAIEALLGMGFTSQEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           T A+     +E         I  ALR +  
Sbjct: 181 TLALEG--YEEVGAITIEAAIGYALRRLGS 208


>gi|314955639|gb|EFT00041.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL027PA1]
          Length = 194

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +      +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   D
Sbjct: 2   VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K A++++ EL
Sbjct: 61  RDVFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186
           K K  +L+          +        +  +       LV LG+    A  AV  V  LK
Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173

Query: 187 KEKNIADDSQIIRLALRAIS 206
           +         ++R ALR+++
Sbjct: 174 EADPAMTIGNLMRAALRSLA 193


>gi|218244912|ref|YP_002370283.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801]
 gi|257057937|ref|YP_003135825.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802]
 gi|226725438|sp|B7JZG7|RUVA_CYAP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218165390|gb|ACK64127.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801]
 gi|256588103|gb|ACU98989.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802]
          Length = 210

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54
           MI  +KGN     ++      ++++V  V Y +  P R    L +   +   +F    ++
Sbjct: 1   MISYLKGNPIETLKNTQNRILLILEVNQVGYEMQIPSRFARELSQNPRETLQVFTHLQVK 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
            +Q  L+GF +  +R+ F  L SV G+GA++A+ ++  +   ELV++I+  N + ++Q P
Sbjct: 61  DEQPILYGFATAAERELFRQLVSVSGIGAQLAIALIDTLGLEELVQAIVNGNIRTLSQTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A RI  ELK K      +V   +   +              +    L+ LGY  
Sbjct: 121 GVGQKTAERIALELKTKLSQWRKLVGITLPSTS-----AIPSLEVLEDVEMTLLALGYTN 175

Query: 175 DQATTAVVSVLKKEKNI--ADDSQIIRLALRAIS 206
           ++   A+ ++ +  + +   +  + IR A+  +S
Sbjct: 176 EEINKAISTLSQDNQMLKNTNSEEWIREAIAWLS 209


>gi|330466911|ref|YP_004404654.1| Holliday junction DNA helicase RuvA [Verrucosispora maris
           AB-18-032]
 gi|328809882|gb|AEB44054.1| Holliday junction DNA helicase RuvA [Verrucosispora maris
           AB-18-032]
          Length = 200

 Score =  190 bits (484), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +I+V GV   + C   T++ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +  F LLQ+  GVG R+A  VL+  T   + ++I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKALFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      AL+ LG+   QA  A
Sbjct: 120 AERLVLELRDRIGPV---------PVGADGAAGVTGGAWPEQVRQALIGLGWTASQADQA 170

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           V +V +  +        +++ A+R +
Sbjct: 171 VAAVAETVDGAAPPVPVLLKQAIRLL 196


>gi|313679904|ref|YP_004057643.1| holliday junction DNA helicase subunit ruva [Oceanithermus
           profundus DSM 14977]
 gi|313152619|gb|ADR36470.1| Holliday junction DNA helicase subunit RuvA [Oceanithermus
           profundus DSM 14977]
          Length = 195

 Score =  190 bits (484), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +    ED  ++ + G+ + ++CP  TL  L ++G+   L     +R+D + L
Sbjct: 1   MVRFLEGVVLEATEDRAIVSLHGLGFEVFCPTGTLGRL-RVGETARLHTRLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF      +WF LL  V GVG RVA+G+LS + A  L +++   + K++   PG+  K+
Sbjct: 60  YGFHDPRLLEWFDLLVGVSGVGPRVALGLLSALPADLLGQAVTGDDPKLLTAAPGVGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +     + +    + +    A   +           L+ LG+ + Q    
Sbjct: 120 AERIVLELKTRLPDHLAGLAPSAAPIENPAAGEAAAA---------LITLGFRETQVHAV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +  K+   A   ++IRLALR +
Sbjct: 171 VQKLAAKQPE-AGAEELIRLALREL 194


>gi|116490641|ref|YP_810185.1| Holliday junction resolvasome, DNA-binding subunit [Oenococcus oeni
           PSU-1]
 gi|122277175|sp|Q04GA2|RUVA_OENOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116091366|gb|ABJ56520.1| Holliday junction DNA helicase subunit RuvA [Oenococcus oeni PSU-1]
          Length = 194

 Score =  190 bits (484), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I+ +   YV IDV G+ + ++ P           D  T+F E  +R +QI L
Sbjct: 1   MYDFLTGIIKTIAAGYVGIDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNQISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G + A+ +++      L+ ++     K + + PGI  K 
Sbjct: 58  YGFKTVKERNLFQKLLNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK    S  +            ++    +   +A++ALV LG+   +    
Sbjct: 118 AQQIVLDLKGKLGDFSKNI--------APMKNLLENSAELDDALAALVALGFSSKEVNK- 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L     +  D+  I+  L+ +
Sbjct: 169 INPKLASLGELTTDA-YIQKGLKLL 192


>gi|295398601|ref|ZP_06808633.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus
           viridans ATCC 11563]
 gi|294973202|gb|EFG48997.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus
           viridans ATCC 11563]
          Length = 210

 Score =  190 bits (484), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 8/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQDQI 58
           M   + G +E +Y D V+++  G+ Y IY          KIG      +++   + ++ I
Sbjct: 1   MYEFMIGQVESVYPDAVILETGGIGYYIYM-ANPYRFTDKIGQDRPVKIWLYQSVSENDI 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           RL+GF S  ++  F+ L SV G+G + A+ +LS      LV +I  +++  + + PG+  
Sbjct: 60  RLYGFKSQEEKIIFLQLISVSGIGPKSALSILSLDDNAGLVAAIQAEDNAFLMKFPGVGK 119

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAINAISALVNLGYGQD 175
           K A +I+ +LK K   + +          +    Q        F      A+ +LGY Q 
Sbjct: 120 KTAGQIVLDLKEKLPKVLAESPSSALFKQESLDIQGPDQVNLPFMHELEEAMASLGYSQR 179

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +    V +       +   ++ IR+AL+ I
Sbjct: 180 EINRVVKNA--DFTGVTATAEAIRIALKFI 207


>gi|310287480|ref|YP_003938738.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17]
 gi|309251416|gb|ADO53164.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17]
          Length = 206

 Score =  190 bits (484), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +     +I+V GV Y +             G    +F    + QD + L
Sbjct: 2   MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +++ PG+  K 
Sbjct: 61  FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+        + D    +++          A   I  LV+LG+    A  A
Sbjct: 121 AQKIILELAGRIDLDQIRPEADGPSESRDPG--------ARQVIEGLVSLGWRPQTAEEA 172

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V             +  D  ++++LAL ++
Sbjct: 173 VRQACDAASIATPISAEDVPRVLKLALSSL 202


>gi|317508678|ref|ZP_07966333.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252999|gb|EFV12414.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC
           BAA-974]
          Length = 199

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G    +  D+V+++  G+ Y +     T + +   GD   L     +R+D   L
Sbjct: 1   MIASVRGEAVEVGADHVVVECAGLGYHVVVLPST-AAMAARGDELRLVTSFIVREDAQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +L++V GVG ++AM VLS +   +L  +I   +   + ++PG+  ++
Sbjct: 60  YGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPAQLRRAIGEGDLAALTRVPGVGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K                 +              +  LV LG+    A +A
Sbjct: 120 AERLALELKEKVGV--------GVGATGKPGAPEGSALVRQQVVDGLVGLGFALKPAESA 171

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
             SVL ++++ A  +  +R AL
Sbjct: 172 ADSVLAEDQD-ASAAVALRGAL 192


>gi|307153472|ref|YP_003888856.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822]
 gi|306983700|gb|ADN15581.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822]
          Length = 209

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMR 54
           MI  +KG    +++       ++++V  + Y I  P R    L         +F    +R
Sbjct: 1   MINYLKGKTIQIHKTATNRLQLILEVNQIGYEIQIPSRLARKLTLDDDQTIQIFTHLQIR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +  +R  F  L SV GVGA+ A+ ++  +   ELV +I+  N + +A+ P
Sbjct: 61  EDQQILYGFATSEERDLFRQLISVSGVGAQSAIALIDTLGLEELVRAIMSNNGRTLAKSP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI  K A RI+ ELK K         +        +  I             L+ LGY  
Sbjct: 121 GIGPKTAERILLELKTKVSQWQPQGLKTSVSAGLPRKEIL------EEVEMTLLALGYSD 174

Query: 175 DQATTAVVSVLKKEK--NIADDSQIIRLALRAIS 206
           ++ T A+ ++ +  +    ++  + ++ A+  +S
Sbjct: 175 EEITGAISAISQDNQLLKNSNIEEWLKSAITLLS 208


>gi|311064395|ref|YP_003971120.1| holliday junction DNA helicase RuvA [Bifidobacterium bifidum
           PRL2010]
 gi|310866714|gb|ADP36083.1| RuvA Holliday junction DNA helicase [Bifidobacterium bifidum
           PRL2010]
          Length = 205

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +     +I+V GV Y +             G    +F    + QD + L
Sbjct: 1   MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +++ PG+  K 
Sbjct: 60  FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+        + D    +++          A   I  LV+LG+    A  A
Sbjct: 120 AQKIILELAGRIDLDQIRPEADGPSESRDPG--------ARQVIEGLVSLGWRPQTAEEA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V             +  D  ++++LAL ++
Sbjct: 172 VRQACDAASIATPISAEDVPRVLKLALSSL 201


>gi|227524332|ref|ZP_03954381.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC
           8290]
 gi|227088563|gb|EEI23875.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC
           8290]
          Length = 198

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +   Y+++ V G+ Y+IY        + +      ++V   +    I L
Sbjct: 1   MYEFMDGQIVDITPAYIVLLVNGIGYLIYTADPYRFNVDQ-NKTIRVYVYQSVSDSAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F  L +V G+G + A+ +L+    + LV +I  ++ K + + PG+  K 
Sbjct: 60  YGFYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVLAISNKDVKFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK   LS +VQ        EQ           +AISAL  LGY   Q   A
Sbjct: 120 AQQIILDLQGKVGDLSQIVQARSGQSASEQ------SDELRDAISALEALGYSAKQID-A 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L K+K +  D + + L L+ +
Sbjct: 173 IRLELGKDKALTTD-EYLSLGLKLL 196


>gi|293192652|ref|ZP_06609606.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus
           F0309]
 gi|292820159|gb|EFF79156.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus
           F0309]
          Length = 207

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 9/204 (4%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +  +  D++ I V G+ + ++      +         T+F    +R+D + L+
Sbjct: 8   ISILRGTVASVGLDHIDIVVGGIGFRVHVTPA-FAQGASRDQEMTVFTSMIVREDLMTLY 66

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF S  +R  F  L SV G+G ++A+  L+ +   +L  ++  Q+   + +IPG+  K A
Sbjct: 67  GFESADERDVFTKLLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSALQRIPGVGKKSA 126

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R+  E+  K  +        +       A   +  + A    +ALV LG+ + QA  A+
Sbjct: 127 QRMALEIGDKLGT-----PAALPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +       +D   ++R AL  +
Sbjct: 182 EKLAGSGLGASD---MLRAALVTL 202


>gi|227495489|ref|ZP_03925805.1| possible crossover junction endodeoxyribonuclease [Actinomyces
           coleocanis DSM 15436]
 gi|226831036|gb|EEH63419.1| possible crossover junction endodeoxyribonuclease [Actinomyces
           coleocanis DSM 15436]
          Length = 195

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 15/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI   +G ++ +   ++++   G    I   + T + + + G+   L+    +R+D + L
Sbjct: 1   MISFFQGEVQAIKPGHLVLVNGGFGLSIQVTVGTANQV-RHGELVGLYTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F +LQ+V  +G R A+  L  +T  EL +++I  + K + +IPGI  K 
Sbjct: 60  YGFLTEDERDTFNVLQTVSKIGPRTALQALEALTPDELRQAVISSDEKTLQRIPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K  + +  V+   +    E              I+ LV+LGY +  A  A
Sbjct: 120 AQRMLIEIGDKLGTPTGNVKLGTTVSVAE-----------TEVIAGLVSLGYSEVSAQAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V      + +  + S+++R AL  +  
Sbjct: 169 VEPF---QGSDMNTSEMLRAALIQLGT 192


>gi|238063870|ref|ZP_04608579.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp.
           ATCC 39149]
 gi|237885681|gb|EEP74509.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp.
           ATCC 39149]
          Length = 200

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +++V GV   ++C   TL+ L +IG    L     +R+D + L
Sbjct: 1   MIASVRGTVTATGPDHAVVEVGGVGLAVHCAPGTLAEL-RIGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +Q F LLQ+  GVG R+A  VL+  T   + ++I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++ EL+ +   +          V  + A   +  ++      ALV LG+ 
Sbjct: 120 AERLVLELRDRIGPV---------PVGADGAAGVTGGAWPDQVRQALVGLGWT 163


>gi|226355827|ref|YP_002785567.1| Holliday junction DNA helicase RuvA [Deinococcus deserti VCD115]
 gi|226317817|gb|ACO45813.1| putative Holliday junction ATP-dependent DNA helicase ruvA
           [Deinococcus deserti VCD115]
          Length = 202

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 7/204 (3%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  + E+  +I   GV Y + CP  TL  L  +G    L     +R+D   LF
Sbjct: 5   IAYLSGVVREVRENSAVIVAGGVGYEVQCPAGTLGKLV-VGQNAELSTRFVVREDAQLLF 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF      + F L+  V GVG ++ + +LS +  + L + ++  + K+++ + G+  K A
Sbjct: 64  GFSDADSLKLFDLVTGVSGVGPKLGLSLLSAMPVSALAQGLMAGDVKLLSSVSGVGKKTA 123

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ EL+ K            + V           +   +AI AL+ LG+ + Q    V
Sbjct: 124 ERLVLELQNKVPE-----HLAAAGVPAGTRATPVSSTAGRDAIEALLALGFREAQVRGVV 178

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +L  +   + D+ +IR  L  +
Sbjct: 179 AELLGADPTQSADA-LIRKGLGRL 201


>gi|290961821|ref|YP_003493003.1| Holliday junction DNA helicase [Streptomyces scabiei 87.22]
 gi|260651347|emb|CBG74469.1| holliday junction DNA helicase [Streptomyces scabiei 87.22]
          Length = 201

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V G+   + C   TLS L + G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RRGQQAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  + 
Sbjct: 60  YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALIAVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177
           A +++ ELK +              V            +     +AL+ LGY      +A
Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAVGTPVTQGWRDQLHAALIGLGYATREADEA 169

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV    +         Q+++ AL+ ++
Sbjct: 170 VAAVAPQAEAAPGTPQVGQLLKAALQTLN 198


>gi|146328995|ref|YP_001210061.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus
           VCS1703A]
 gi|166230547|sp|A5EXH7|RUVA_DICNV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146232465|gb|ABQ13443.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus
           VCS1703A]
          Length = 204

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 6/201 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     D +LI+V GV Y +  P   ++   ++G+  T+FV    R+D   L
Sbjct: 1   MIGWLQGRVLYKQNDQLLINVCGVGYELTVPQSVMAS-AQVGEELTVFVHHVQREDGQFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S L RQ F  L  V G+G ++++ +LS +T   L+ ++  Q S    ++ GI  K 
Sbjct: 60  YGFSSFLQRQLFRELIRVSGIGPKLSIVILSGLTPEALIAAVRAQESAPFLRLSGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  +       +  +      E +      S +  AI AL+ L     +A   
Sbjct: 120 AERLLIELHDRVEKNDLFLCDE-----SESSRAPIALSASEEAIQALIALELAPAEAELW 174

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
           V    K     AD + +I+ A
Sbjct: 175 VKKAQKTLAEDADSAALIKTA 195


>gi|320528322|ref|ZP_08029484.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204]
 gi|320131236|gb|EFW23804.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204]
          Length = 198

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D+V+++   + Y +  P      L    D   ++   H+ ++ + L
Sbjct: 4   MIAFVKGKVASYGADWVVVNCHDIGYQMAYPHPENLHL---NDEVFIYTYLHITENDMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  ++  F+ L SV+G+G + AMG+LS+     +V +I   +  ++ ++PGI  K 
Sbjct: 61  FGFESQDEKALFLKLISVKGLGPKTAMGMLSKCGYQSIVSAIESGDVTLLKKMPGIGAKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +S+           +  +    S P+    A+  L NLGY Q +  +A
Sbjct: 121 ASQIVLDLKGKLVSV---------PTSSPKQDTVSYPAEIREALDGLKNLGYKQGE-LSA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +++ +   +    + ++L L+ +
Sbjct: 171 VANMMSENPGLT-TEKYLKLGLQFL 194


>gi|262283650|ref|ZP_06061415.1| Holliday junction DNA helicase motor protein [Streptococcus sp.
           2_1_36FAA]
 gi|262260707|gb|EEY79408.1| Holliday junction DNA helicase motor protein [Streptococcus sp.
           2_1_36FAA]
          Length = 197

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 100/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFAAEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +    +   D+S  +  QA   +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVV----IAGDDLSAKDAVQA--SNENQELEEAMEAMLALGYKAAE---- 169

Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205
           +  + K  +   D ++  I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|224283112|ref|ZP_03646434.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140261|ref|ZP_07802454.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132771|gb|EFR50388.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 205

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +     +I+V GV Y +             G    +F    + QD + L
Sbjct: 1   MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +++ PG+  K 
Sbjct: 60  FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+        + D    +++          A   I  LV+LG+    A  A
Sbjct: 120 AQKIILELAGRIDLDQIRPEADGPSESRDPG--------AKQVIEGLVSLGWRPQTAEEA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V             +  D  ++++LAL ++
Sbjct: 172 VRQACDAASIATPISAEDVPRVLKLALSSL 201


>gi|162447235|ref|YP_001620367.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A]
 gi|189045740|sp|A9NF61|RUVA_ACHLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161985342|gb|ABX80991.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A]
          Length = 186

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 99/202 (49%), Gaps = 21/202 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  GV Y++  P+       KIG+  T+    H+R+D  +L
Sbjct: 1   MYRYIKGIVTQINPQHIVVENNGVGYLVLSPVPYQY---KIGEETTVVTYLHVREDIFQL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +     F+ L SV G+G + AM +++     +++ +I   ++K + + PGI MK 
Sbjct: 58  YGFKDEETLNLFLKLISVSGIGPKSAMSIVAFDDTNKIIAAIETSDAKYLTKFPGIGMKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK +               ++  +  +   + +  +AL  LGY + +   +
Sbjct: 118 AQQIILDLKGKLV--------------NDELDMQLLSDNSKDVAAALEALGYNKKEIAKS 163

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +  V   +    D ++ ++ AL
Sbjct: 164 LKHVNFDQ----DLNKALKEAL 181


>gi|294790877|ref|ZP_06756035.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304]
 gi|294458774|gb|EFG27127.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304]
          Length = 209

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 10/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G+I  +  D ++IDV GV + +    R  + L   G    +     + +D + L
Sbjct: 1   MIASLEGDILSIEPDGIVIDVNGVGFSVRMSARDTAQLHA-GSHERIITLMTVSRDALSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   ++ F+ LQ V G+G RVAM +LS ++A EL  +I   +   + + PG+  K 
Sbjct: 60  YGFLNPSSKKLFIQLQKVSGIGPRVAMAILSTLSAEELATAIRDNDVTALTRAPGLGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G     +    Q+ +  +  +    +M       I  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELHGTIDFTNLDPDQEQAAGHDTEKQDHNM----RQVILGLVSLGWQQRDAFGA 175

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
               +K+       +  D  +++R AL  +
Sbjct: 176 TKEAMKQLSLGEPLDAQDVPRVLRTALSDL 205


>gi|327450649|gb|EGE97303.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL087PA3]
          Length = 194

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +      +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   D
Sbjct: 2   VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K A++++ EL
Sbjct: 61  RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186
           K K  +L+          +        +  +       LV LG+    A  AV  V  LK
Sbjct: 121 KDKVAALTPRGASVSGAPH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173

Query: 187 KEKNIADDSQIIRLALRAIS 206
           +         ++R ALR+++
Sbjct: 174 EADPAMTIGNLMRAALRSLA 193


>gi|313888460|ref|ZP_07822127.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845489|gb|EFR32883.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 194

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      Y++++  G+ YI+    R L    +  +   + +   +R+D   L
Sbjct: 1   MIEFLRGRVHSTDRGYLVLESNGIGYIVNMVERELHTFYE-NEEVFINIRLVLREDAAIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LL SV G+G ++AMG+L       + + II ++ K + ++PGI  K 
Sbjct: 60  YGFRHIETRDAFDLLTSVTGIGPKLAMGILDGDDVFNIAKYIISKDEKSLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   L+         +      +  +     +A+ AL++LGY    A  A
Sbjct: 120 AQRIILELKDKVEKLAL-------DLTSMTDDVEIIEEKDDSAVEALISLGYNVYDAKKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V        D S+ IR AL+ +
Sbjct: 173 LEKV----DPSLDISERIREALKLM 193


>gi|295396081|ref|ZP_06806264.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971022|gb|EFG46914.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 194

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  + + +   GV   ++        + + G    L  E  +R+D + L
Sbjct: 1   MIRYLEGTVHTVSANSLTVVTSGVGREVFVTPAVAGRV-RTGSEVALHTELIVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F  L    GVG ++A+ +LS ++  ++  +I     KV+  +PG+  K+
Sbjct: 60  YGFDTPSELKLFSTLLGANGVGPKLALAILSVLSPDQVYGAISDNTPKVLTAVPGVGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ +L+GK  + S+V        +                + ALV LG+ +  A  A
Sbjct: 120 AAKLIVDLQGKVPATSAVPSSGAGPAS-------------AEVVQALVGLGWKEATAIKA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V   E   A  + +++ ALR +
Sbjct: 167 VEAV-APEMGQASVADMLKAALREL 190


>gi|44888463|sp|Q83GK0|RUVA_TROWT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 194

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 109/206 (52%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V++++ G+ +++  P        ++     L+    +R+D + L
Sbjct: 1   MIASLSGLLEAVRPGSVVVNMHGIGFLVRVPQSFN---PEVDAEVKLYTSLQVREDSVSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S L+   F  L ++ GVG RVA+ +LS +T  E+  +++  + K + ++ G+  K+
Sbjct: 58  YGFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKL 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +L GK  S+    ++    V++           +   + AL+ LG+ + ++  A
Sbjct: 118 AGTIVLQLAGKLTSVPLENRKQEQAVDR-----------SAEIVQALIGLGWQRQESAAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V SVL+K++++    +I+R ALR ++
Sbjct: 167 VESVLEKDQSLT-MPEILRNALRYLA 191


>gi|22298075|ref|NP_681322.1| Holliday junction DNA helicase motor protein [Thermosynechococcus
           elongatus BP-1]
 gi|34222868|sp|Q8DLG1|RUVA_THEEB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|22294253|dbj|BAC08084.1| Holliday junction DNA helicase [Thermosynechococcus elongatus BP-1]
          Length = 210

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           M   ++G + G   +      ++++V GV Y +      L       +   +F    +R+
Sbjct: 1   MFVYLRGTVVGHQSEGGHRCALILEVNGVGYRLLVTSHLLQQYPPRPEVVQIFTHLSIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           DQ+ L+GF S  +R  F+ L  V GVG ++A+ +L  +   ELV++I+  N++ +++ PG
Sbjct: 61  DQMLLYGFASAAERDLFLRLIRVNGVGPQMALSLLDTLPLPELVQAIVSGNTRRLSRAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK    +    +    +        +       + A+      GY   
Sbjct: 121 VGHKTAERIALELKAALSAWRQEMGFTTASSGLPSEAVREELELTLLAL------GYSDR 174

Query: 176 QATTAVVSV--LKKEKNIADDSQIIRLALRAISC 207
           +   A+ +V       N +D    +R A+  +S 
Sbjct: 175 EIAAALTAVGQTTTLPNNSDPEAWLREAIAWLSA 208


>gi|293395808|ref|ZP_06640090.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
 gi|291421745|gb|EFE94992.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
          Length = 127

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 64/119 (53%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VL++  GV Y ++ P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITALVKLPGVGKK 119


>gi|284048863|ref|YP_003399202.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM
           20731]
 gi|283953084|gb|ADB47887.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM
           20731]
          Length = 204

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I G ++ +  ++ L+D QGV Y I+     LS + ++     ++    +R+D ++L
Sbjct: 1   MIGFITGRVDHIGTNFCLVDTQGVGYRIFLNTGDLSRI-QVDQKVKIYTYLSVREDALQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS      F  L +V G+G +VA G+LS         ++  ++ K + ++PGI  K 
Sbjct: 60  FGFLSYDAYSLFTQLITVSGIGPKVAQGILSAAKVDAFYLAVKSRDLKFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK   ++    ++++ +    +        +        L  LGY Q +    
Sbjct: 120 AERLLLELKD--MTGPEGLEEEGTAGGFDGDVPEDDTTTLGAVAEGLSYLGYTQGE---- 173

Query: 181 VVSVLKKEKNIADD--SQIIRLALRAIS 206
           +  VLKK K  AD     +++ ALR ++
Sbjct: 174 IAQVLKKLKVTADSRAEDLLKEALRLLA 201


>gi|313764321|gb|EFS35685.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL013PA1]
 gi|313772296|gb|EFS38262.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL074PA1]
 gi|313792007|gb|EFS40108.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL110PA1]
 gi|313802043|gb|EFS43277.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL110PA2]
 gi|313807654|gb|EFS46141.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL087PA2]
 gi|313810161|gb|EFS47882.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL083PA1]
 gi|313812811|gb|EFS50525.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL025PA1]
 gi|313815859|gb|EFS53573.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL059PA1]
 gi|313818691|gb|EFS56405.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL046PA2]
 gi|313820461|gb|EFS58175.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL036PA1]
 gi|313822733|gb|EFS60447.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL036PA2]
 gi|313825333|gb|EFS63047.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL063PA1]
 gi|313827628|gb|EFS65342.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL063PA2]
 gi|313830492|gb|EFS68206.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL007PA1]
 gi|313833528|gb|EFS71242.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL056PA1]
 gi|313838864|gb|EFS76578.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL086PA1]
 gi|314915311|gb|EFS79142.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA4]
 gi|314918138|gb|EFS81969.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL050PA1]
 gi|314920215|gb|EFS84046.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL050PA3]
 gi|314925070|gb|EFS88901.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL036PA3]
 gi|314931738|gb|EFS95569.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL067PA1]
 gi|314958035|gb|EFT02138.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL002PA1]
 gi|314960393|gb|EFT04495.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL002PA2]
 gi|314962663|gb|EFT06763.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL082PA1]
 gi|314967471|gb|EFT11570.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL037PA1]
 gi|314973492|gb|EFT17588.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL053PA1]
 gi|314976172|gb|EFT20267.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL045PA1]
 gi|314978569|gb|EFT22663.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL072PA2]
 gi|314983806|gb|EFT27898.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA1]
 gi|314987987|gb|EFT32078.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA2]
 gi|314989797|gb|EFT33888.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA3]
 gi|315077879|gb|EFT49930.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL053PA2]
 gi|315080504|gb|EFT52480.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL078PA1]
 gi|315084175|gb|EFT56151.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL027PA2]
 gi|315085518|gb|EFT57494.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL002PA3]
 gi|315088425|gb|EFT60401.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL072PA1]
 gi|315096039|gb|EFT68015.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL038PA1]
 gi|315098667|gb|EFT70643.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL059PA2]
 gi|315101330|gb|EFT73306.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL046PA1]
 gi|327326319|gb|EGE68109.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL096PA2]
 gi|327330390|gb|EGE72139.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL097PA1]
 gi|327331806|gb|EGE73543.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL096PA3]
 gi|327443583|gb|EGE90237.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL013PA2]
 gi|327445787|gb|EGE92441.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL043PA2]
 gi|327448230|gb|EGE94884.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL043PA1]
 gi|327453274|gb|EGE99928.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL092PA1]
 gi|327454013|gb|EGF00668.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL083PA2]
 gi|328753271|gb|EGF66887.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL025PA2]
 gi|328753338|gb|EGF66954.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL020PA1]
 gi|328754067|gb|EGF67683.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL087PA1]
 gi|328760719|gb|EGF74285.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL099PA1]
          Length = 194

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +      +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   D
Sbjct: 2   VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K A++++ EL
Sbjct: 61  RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186
           K K  +L+          +        +  +       LV LG+    A  AV  V  LK
Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173

Query: 187 KEKNIADDSQIIRLALRAIS 206
           +         ++R ALR+++
Sbjct: 174 EADPAMTIGNLMRAALRSLA 193


>gi|16127467|ref|NP_422031.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15]
 gi|221236280|ref|YP_002518717.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus NA1000]
 gi|20455260|sp|Q9A3G7|RUVA_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766950|sp|B8H455|RUVA_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13424921|gb|AAK25199.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15]
 gi|220965453|gb|ACL96809.1| Holliday junction DNA helicase ruvA [Caulobacter crescentus NA1000]
          Length = 205

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E+  LIDV GV Y++ C  RTL  L  +G+   L +E+   +   +R
Sbjct: 1   MIGRLRGAVAEVGEEEALIDVMGVGYLVRCGHRTLQRLPALGEETLLHIESQWSESAGLR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  DR+ F+LLQ++QGVG + AM VL  ++  EL  ++  ++   + +  G+  K
Sbjct: 61  LYGFLTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK K I+   V+   MS          + P+   +A++AL+ LG  +  A  
Sbjct: 121 LALRIVTELKDKPITDGPVL---MSAPTSSAPSAPAKPAPTGDAVAALMGLGVAEVNARR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V +   +    A    +I+  L+ +
Sbjct: 178 VVEAAAAELGEEATVQALIKAGLKEL 203


>gi|331701280|ref|YP_004398239.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128623|gb|AEB73176.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           buchneri NRRL B-30929]
          Length = 199

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++++ V GV Y+I         + +      +++   +    I L
Sbjct: 1   MFEFLEGTVVDITPTHIVLLVGGVGYLINTADPYRFNVDE-KKVIRVYIYQSVSDTAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  D+Q F  L SV G+G + A+ +L+      L+ +I  ++ K + + PG+  K 
Sbjct: 60  FGFATIEDKQIFEKLISVSGIGPKSALAILAGNDRDGLITAINNEDVKFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +++GK   +++           +            +A+SAL  LGYG  Q   A
Sbjct: 120 ARQIILDMQGKLDDIATN-----GVSLAQPLGSNEKSPELADALSALEALGYGAKQIA-A 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L K+ +++ D + + L L+ +
Sbjct: 174 IEPDLVKQADLSTD-EYLSLGLKLL 197


>gi|237738311|ref|ZP_04568792.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC
           9817]
 gi|229420191|gb|EEO35238.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC
           9817]
          Length = 196

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 97/204 (47%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +E    DY+ +DV GV Y +   +R    + K G+   L++  ++++D  +L
Sbjct: 1   MFEYLKGKVEYKKPDYLALDVNGVGYKVNISLRVYDKI-KTGESVRLYIFNYIKEDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R  F +L  V+GVG  + + ++S     +L + +   +   + ++P +  K 
Sbjct: 60  IGFLEERERNLFEMLLGVKGVGVSLTLSIMSTFDVEQLRKIVAENDYATLKRVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  ++ ++  QD         ++    +       AL  LGY Q +  + 
Sbjct: 120 AQQVILDLKGKLKAIGNLFTQD--------ENLFESFAIEDELYEALEALGYSQKEINSL 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V    ++ +      + I+  L+ 
Sbjct: 172 VSK--EEIRGFTSIEEAIKCVLKK 193


>gi|296272620|ref|YP_003655251.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM
           7299]
 gi|296096794|gb|ADG92744.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM
           7299]
          Length = 186

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I       + IDV G+ Y ++  +   S +  I +  +L     +R+D   L
Sbjct: 1   MIVGINGKIIRKEPTLLHIDVNGLVYEVFVSVNCSSKI--IENNVSLHTTYIIREDSQAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +++ F  +  + GVG +VA+ + S  T +   + +   +  ++ ++PGI  K 
Sbjct: 59  YGFIDVNEKKLFDTVIKINGVGPKVALAICSTFTPSSFSQIVSSNDISMLKRVPGIGPKG 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL G               V    +   S+ +  + A  AL +LG+ +D  + A
Sbjct: 119 ASRILVELSG--------------FVIDGNSDEDSVGTNMMEASMALESLGFKKDVISKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S      +  + S ++R AL+ +
Sbjct: 165 LKS-----CSATNTSDLVREALKKL 184


>gi|126656681|ref|ZP_01727895.1| Holliday junction DNA helicase motor protein [Cyanothece sp.
           CCY0110]
 gi|126621901|gb|EAZ92609.1| Holliday junction DNA helicase motor protein [Cyanothece sp.
           CCY0110]
          Length = 212

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 99/214 (46%), Gaps = 13/214 (6%)

Query: 1   MIGKIKG---NIEGLYEDYV--LIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI  +KG    +     + +  +++V  + Y I  P +    + +   D   +F    ++
Sbjct: 1   MISYLKGSPIEVIKNTNNRIILVLEVNQIGYEIQIPSKLARDISQEKLDIIQVFTHLQIK 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
            DQ  L+GF +  +R+ F  L SV G+GA+ A+ ++  +   ELV++I+  N ++++Q P
Sbjct: 61  DDQQILYGFFTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI  K A RI  EL+ K      +V   ++      +          +    L+ LGY  
Sbjct: 121 GIGKKTAERIALELRTKLSQWRKLVGVTVTS-----SSAMPSLEILEDIEMTLLALGYTN 175

Query: 175 DQATTAVVSVLKKEKNI--ADDSQIIRLALRAIS 206
           ++   A+ ++ +    +   +  + I+ A+  +S
Sbjct: 176 EEINKAISTLSQDNLMLKNTNTEEWIKEAIAWLS 209


>gi|145224407|ref|YP_001135085.1| Holliday junction DNA helicase motor protein [Mycobacterium gilvum
           PYR-GCK]
 gi|315444739|ref|YP_004077618.1| Holliday junction DNA helicase, Ruvsubunit alpha [Mycobacterium sp.
           Spyr1]
 gi|189045758|sp|A4TBQ6|RUVA_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145216893|gb|ABP46297.1| DNA recombination protein RuvA, domain I [Mycobacterium gilvum
           PYR-GCK]
 gi|315263042|gb|ADT99783.1| Holliday junction DNA helicase, RuvA subunit [Mycobacterium sp.
           Spyr1]
          Length = 195

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D   L
Sbjct: 1   MIASVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGSEARLITAMIVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L  V G+G  +A+G L+      L ++I   +   + +IP +  K 
Sbjct: 60  YGFADSDARDLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDLTALTRIPKVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  +   L+ K  S         S V     H    P      + ALV LG+   QA  A
Sbjct: 120 AELLALTLRDKVGS------STSSGVAAAGGHGIRGP-----VVEALVGLGFAVKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  +      S + R AL  +
Sbjct: 169 TDKVLANDPEATTSSAL-RAALSML 192


>gi|312870465|ref|ZP_07730585.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3]
 gi|311094022|gb|EFQ52346.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3]
          Length = 197

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +   Y+++DVQGV Y +                  +FV   +R D I L
Sbjct: 1   MYEYLTGTISIVAPQYIVVDVQGVGYKLLV-ANPYRFHEDSAKAVRVFVYQAVRDDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFSDQAEKRLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNIGYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LK K  + ++    D   V+       +    A+ A+      GY + +    
Sbjct: 120 ASQIVLDLKDKLAAATAGSLFDPQPVSATANPALADALAALKAL------GYKEREVKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +   L +E+   D  + +R ALR ++
Sbjct: 173 IGKQLGEEQQSTD--EYLRQALRLLN 196


>gi|270290977|ref|ZP_06197200.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4]
 gi|304385248|ref|ZP_07367593.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus
           acidilactici DSM 20284]
 gi|270280373|gb|EFA26208.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4]
 gi|304328455|gb|EFL95676.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus
           acidilactici DSM 20284]
          Length = 195

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++IDV GV Y++       S   K  +   ++V   + + +  L
Sbjct: 1   MYEYLNGVVVDINPAYIVIDVNGVGYLVNV-ANPYSF--KPDEKQKVYVHQAVSETENTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF   +D++ F+ L  V+G+G + A+ +L+       + ++   +   + + P I  K 
Sbjct: 58  YGFKKYVDKELFLNLLKVKGIGPKSALAILANDDHQGFIRAVNNDDVNYLKKFPKIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK  S                    +  +    AI AL  LGY + +    
Sbjct: 118 AKQIILDLKGKITS--------NEPSGPLFEMPTTTNNTLDEAIEALAALGYSERE-LKK 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L +  N   D Q I   L+ +
Sbjct: 169 ITPKLDELSNQTTD-QYISAGLKLL 192


>gi|240173173|ref|ZP_04751831.1| Holliday junction DNA helicase RuvA [Mycobacterium kansasii ATCC
           12478]
          Length = 195

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 13/194 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIAGVRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTEARLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L  ++   +   + ++PGI  + 
Sbjct: 60  YGFGDRETRDLFLTLLSVSGVGPRLAMATLAVHDAAALRRALADGDVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     +                 +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKVGPAGAAAP------------ALNGNAVRTPVVEALVGLGFAAKQAEEA 167

Query: 181 VVSVLKKEKNIADD 194
              VL  E      
Sbjct: 168 TDKVLAAEPGTTTS 181


>gi|116074623|ref|ZP_01471884.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9916]
 gi|116067845|gb|EAU73598.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9916]
          Length = 224

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 8/213 (3%)

Query: 1   MIGKIKGNIEGLY----EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       ++I   GV Y +       + L +    CT ++    R+D
Sbjct: 9   MIGWLQGERIDSWVQGGRQGLVIACGGVGYEVQFTSGHRTRL-EAERQCTAWIHQVQRED 67

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GFL   +R  F  L SV GVG ++A+ +L    AT LV++I+  + + + Q  G+
Sbjct: 68  GCMLYGFLEKRERDLFRTLISVNGVGPQMALALLESCGATALVDAIVEGDLRQLTQAQGV 127

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQD 175
             + A R+  EL+ +  S  +     +S V++                   L  LGY   
Sbjct: 128 GKRTAERLAVELRDRLGSWRAPADDGLSLVDRSDLKALPLQGDPLQELQQTLEALGYEDL 187

Query: 176 QATTAVVSVLKKEKNIA--DDSQIIRLALRAIS 206
           +   A+ +V    +  A  D    +R +LR +S
Sbjct: 188 EIRRAMRAVATAAEPPAAGDHDAWLRESLRWLS 220


>gi|313682066|ref|YP_004059804.1| holliday junction DNA helicase subunit ruva [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154926|gb|ADR33604.1| Holliday junction DNA helicase subunit RuvA [Sulfuricurvum kujiense
           DSM 16994]
          Length = 187

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G IE      V ++V GV Y ++  + T S +G   +   L     +R+D  +L
Sbjct: 1   MIIGLDGIIEYKEPSSVHLNVNGVIYEVFISLHTYSSIGS--EKVKLHTHHVIREDAQQL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  +  + G+G + A+ + S  T  +    I  ++   + ++PGI  K 
Sbjct: 59  YGFEQKSEKILFEGMLKINGIGPKAALAICSTFTPEQFAGIISSKDINALKKVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM EL G    L                   +  +    A  AL  LG+ ++Q   A
Sbjct: 119 AGRIMVELAGFDAVLLG--------------SGITATTATTEASMALEALGFKKEQIGKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +         D + +++ AL+ +
Sbjct: 165 LSA-----SGATDTAALVKDALKQL 184


>gi|167644751|ref|YP_001682414.1| Holliday junction DNA helicase RuvA [Caulobacter sp. K31]
 gi|189045745|sp|B0SUN8|RUVA_CAUSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167347181|gb|ABZ69916.1| DNA recombination protein RuvA domain I [Caulobacter sp. K31]
          Length = 204

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E+  LIDV GV Y++ C  RTL  L  +G+   L +E+   +   +R
Sbjct: 1   MIGRLRGAVAEIGEEEALIDVMGVGYVVRCGSRTLQRLPALGEEALLHIESQWSESAGLR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  DR+ F+LLQ++QGVG + AM VL  ++  EL  ++  ++   + +  G+  K
Sbjct: 61  LYGFGTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRASGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK K I+   V+      V    A          +A++AL+ LG  +  A  
Sbjct: 121 LALRIVTELKDKPITDGPVLMTAPGAVAAAPAKAAPTG----DAVAALMGLGVAEVNARR 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V +   K  + A    +I+  L+ +
Sbjct: 177 VVEAAAAKLGDEATVQALIKAGLQEL 202


>gi|88602182|ref|YP_502360.1| Holliday junction DNA helicase RuvA [Methanospirillum hungatei
           JF-1]
 gi|88187644|gb|ABD40641.1| Holliday junction DNA helicase subunit RuvA [Methanospirillum
           hungatei JF-1]
          Length = 195

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G + G     V+++  G+ Y I  P   L+ + K  D   L+ E  +RQD ++L
Sbjct: 1   MIARIRGLVIGYETGSVIVEAGGIGYRIRVPESVLTSITK-DDEIILYTELIIRQDLMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL SV  +G +  + ++SR++  E+ ++I  +  ++++Q+ G+  K 
Sbjct: 60  YGFYTPEETEMFRLLISVSHIGPQTGLAIISRLSLPEICDAISSKKPEILSQVQGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K   L     Q  +   K Q           +A+ AL++LGY +++A  A
Sbjct: 120 AERIILELQKKVSELKIQYPQTPTSSTKIQ-----------DAVLALLSLGYSREEAMGA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +      +      S+++R AL
Sbjct: 169 LER-SALDTETVSSSELVREAL 189


>gi|219871499|ref|YP_002475874.1| holliday junction DNA helicase motor protein [Haemophilus parasuis
           SH0165]
 gi|219691703|gb|ACL32926.1| holliday junction DNA helicase motor protein [Haemophilus parasuis
           SH0165]
          Length = 171

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 4/172 (2%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + +   L  + +   +F    +R+D   LFGF+   +R  F  L    GVG ++A+ +LS
Sbjct: 1   MTSFYNLPDLNEDTMIFTHLVIREDAHLLFGFVQKQERMLFRELIKTNGVGPKLALAILS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++ +E + +I  +    + +IPGI  K A R++ ELKGK  +L       +       +
Sbjct: 61  AMSVSEFMSAIEQEELAKLIKIPGIGRKTAERLLVELKGKFSTLFHHEISILQPSGNLLS 120

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
                P     AI AL++LGY    A   V  V +K  + +   Q+IR AL+
Sbjct: 121 MASMSP--VNEAIDALISLGYKAADAEKMVKKVNRK--SESTSEQLIREALK 168


>gi|262197092|ref|YP_003268301.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM
           14365]
 gi|262080439|gb|ACY16408.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM
           14365]
          Length = 210

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 7/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       V+++  GV Y +   I TL  L   G+  TL + TH  + ++ L
Sbjct: 1   MIGRLRGTLVEQEGSMVIVECGGVGYEVTVSIHTLQSLPAEGEPVTLRIFTHALESRVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R  F LL +V+ VG   A+G+LS  +   E+ E I    +  + ++ G+  K
Sbjct: 61  YGFGSTLERDLFDLLITVKKVGPSSAVGILSAGSGPAEIAEMIANGETSSLTRLRGVGKK 120

Query: 120 IASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            A  ++ EL+ K   L +       +  +      A   S          AL+ LG+ Q 
Sbjct: 121 TAEMLVVELREKCELLLATHRVQGGRAAARAPAAAARPSSRGPLLDEVAQALLQLGWRQQ 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
                V  +    ++      ++R ALRA+
Sbjct: 181 SVDQVVSELAPTAED--SLESLLRQALRAM 208


>gi|221194792|ref|ZP_03567849.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626]
 gi|221185696|gb|EEE18086.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626]
          Length = 211

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 6/211 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  +    V++DV GV Y +     T + L + G+   T+     +R+D + 
Sbjct: 1   MIVQLTGTLLSVSPSLVVLDVNGVGYELGVSANTAASLPQAGEAGVTVLTRMVVREDAME 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L+++ G+GA++A+ VLS  T  +L   +  ++   + Q+ G+  K
Sbjct: 61  LYGFSSREERALFDRLRAISGIGAKLALSVLSTFTPQQLASVVASEDVTRMTQVAGLGKK 120

Query: 120 IASRIMTELKG---KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            A R++ EL     K   L ++V             + +  S       AL+ +G+   +
Sbjct: 121 KAGRMLVELSDVFAKDAELRNLVGLSGLSDTNVSGGLSAHTSLDDEVTEALLAMGFTSQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           A  A+    ++E       + +  ALR +  
Sbjct: 181 AALALEG--RQEAGALSIEKAMSYALRRLGS 209


>gi|209524253|ref|ZP_03272803.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328]
 gi|209495344|gb|EDZ95649.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328]
          Length = 206

 Score =  187 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG + G + G+Y+      ++ +DV GV Y +    R  +   KIG+   +F   H+R 
Sbjct: 1   MIGYLNGTVAGIYKKTGNRVFLWLDVNGVGYELQILPRMQNLDAKIGENLQVFTHLHIRD 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D + L+GF S  +R  F  L SV G+G ++A+ +L  +   +LV++I+  N+ ++ + PG
Sbjct: 61  DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLALPDLVQAIVGGNTGILTKTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K               +   A I            +L+ LGY   
Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAEI------QEEVEISLLALGYTTS 174

Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLA 201
           +   A+ ++               I+ A
Sbjct: 175 EVMQALKAITSHPNLSENNSAEDWIKYA 202


>gi|315108548|gb|EFT80524.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL030PA2]
          Length = 194

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +      +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   D
Sbjct: 2   VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F L+Q+  GVG ++A  ++S + A +L  +I  ++   +  +PGI  K A++++ EL
Sbjct: 61  RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCSVPGIGRKGAAKMILEL 120

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186
           K K  +L+          +        +  +       LV LG+    A  AV  V  LK
Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173

Query: 187 KEKNIADDSQIIRLALRAIS 206
           +         ++R ALR+++
Sbjct: 174 EADPAMTIGNLMRAALRSLA 193


>gi|34556867|ref|NP_906682.1| Holliday junction DNA helicase RuvA [Wolinella succinogenes DSM
           1740]
 gi|44888365|sp|Q7MA70|RUVA_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34482582|emb|CAE09582.1| PUTATIVE HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes]
          Length = 189

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KGNIE      + ++V GV Y I+  I T + LG+      L +   +R++   L
Sbjct: 1   MIVALKGNIEKKEPTRLWLEVGGVTYEIFISIHTSAALGE--KEARLLITHLIREEAWSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +++ F  L  + GVG + A+ +LS  T     + I  Q+ K + ++PGI  K 
Sbjct: 59  YGFAEEAEKRVFDTLIKINGVGPKAALAILSTYTPPTFAQIIQAQDVKALQRVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM EL G ++SL             ++    S P     +  AL +LG+  +    A
Sbjct: 119 AGRIMVELAGFSLSL-------------QEGSKASTPPVFEESRLALESLGFKSELIAKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++           +II+ AL+ +
Sbjct: 166 LQNIQA-----TTTQEIIKEALKKL 185


>gi|260654961|ref|ZP_05860449.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1]
 gi|260630276|gb|EEX48470.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1]
          Length = 200

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +  L     +++  G+ + +    +    L ++G+   L     +    + L
Sbjct: 1   MLASLRGTVILLEGSSAVVECGGLGFQVQLTRKAFG-LCRVGESVFLQTYLQVSDAGMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +RQ F LL +V+GVG ++AM VL  ++A E + ++   +SK +  +PGI  K 
Sbjct: 60  FGFADAAERQAFELLTTVKGVGGKLAMTVLQSLSAQETIAAVAAGDSKTLTAVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL  K    S     D++               +   I AL +LG+    +  A
Sbjct: 120 AERICFELSEKITGSSEWSSADLTA----------KLQHSDEVIEALESLGFDHASSVRA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + ++    A   + I   LR +
Sbjct: 170 YQQLCQERGEPASTEEAIFNCLRLL 194


>gi|284051632|ref|ZP_06381842.1| Holliday junction DNA helicase RuvA [Arthrospira platensis str.
           Paraca]
 gi|291571635|dbj|BAI93907.1| Holliday junction DNA helicase RuvA [Arthrospira platensis NIES-39]
          Length = 206

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIE---GLYEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG + G +        + V++  DV GV Y +    R  +   K G+   +F    +R 
Sbjct: 1   MIGYLNGTVAGIYKKTGNRVILYLDVNGVGYELQILPRMQNLDAKTGENLQVFTHLQVRD 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D + L+GF S  +R  F  L SV G+G ++A+ +L  +   +LV++I+  N+ ++ + PG
Sbjct: 61  DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLELPDLVQAIVGGNTGILTKTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K               +   A I            +L+ LGY   
Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAEI------QEEVEMSLLALGYTSS 174

Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLA 201
           +   A+ ++               I+ A
Sbjct: 175 EVMQALTAITSHPNLAENNSAEDWIKYA 202


>gi|254383613|ref|ZP_04998963.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp.
           Mg1]
 gi|194342508|gb|EDX23474.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp.
           Mg1]
          Length = 210

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 11/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV   + C   T++ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTLAVIEVGGVGMAVQCTPNTIAAL-RVGEPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L   +   L  ++   + + +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRLAVESGDERALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++     +              V  ++A       +     +AL+ LGY    A  A
Sbjct: 120 AQKLLL----ELKGKLGAPLGSSGLVGAQRAAAAGPAPWTEQLSAALIGLGYASRDAEEA 175

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +          A   Q++R AL++++
Sbjct: 176 VSAVTPQAEAAIAAGGSAPVPQLLRAALQSLN 207


>gi|116493020|ref|YP_804755.1| Holliday junction DNA helicase subunit RuvA [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265516|sp|Q03EQ9|RUVA_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116103170|gb|ABJ68313.1| Holliday junction DNA helicase subunit RuvA [Pediococcus
           pentosaceus ATCC 25745]
          Length = 195

 Score =  187 bits (476), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y+++DV GV +++         L        +FV   + ++   L
Sbjct: 1   MYEYLDGVVVNVNPAYIVVDVNGVGFLVNVANPYSFELDAKQ---KVFVHQAVSENDQTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F+ L  V+G+G + A+ +L+    T L+ +I   +   + + P I  K 
Sbjct: 58  YGFKKAEDKELFLNLLKVKGIGPKSALAILANDDHTGLINAINNDDVSYLKKFPKIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK    + V           QA           A+ AL+ LGY + +    
Sbjct: 118 AQQIILDLKGKVAVENEVGTLFDLSTTSNQA--------LDEALEALIALGYSEKEVKKL 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + ++     D  Q I   L+ +
Sbjct: 170 TKKLSEQTDRTTD--QYISSGLKLL 192


>gi|302533404|ref|ZP_07285746.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C]
 gi|302442299|gb|EFL14115.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C]
          Length = 209

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV   + C   T++ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGQVAALAPTLAVIEVGGVGMAVQCTPNTIAGL-RVGEPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG RVA  +L   T   L  +    ++K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRVAQAMLGVHTPDALRVAFAAGDAKALTAVPGIGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A           +         ++   +          +     +AL+ LGY    A  A
Sbjct: 120 AQ-----KLLLELKGKLGAPGGVAVGAQRAPAAAGPAPWTEQLTAALIGLGYASRDAEEA 174

Query: 181 VVSVLKKE------KNIADDSQIIRLALRAIS 206
           V +V  +          A   Q++R AL++++
Sbjct: 175 VSAVTPQAEAAIASGGSAPVPQLLRAALQSLN 206


>gi|206889338|ref|YP_002248715.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226698744|sp|B5YKF0|RUVA_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|206741276|gb|ACI20333.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 190

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 21/206 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG +  +  D ++I   G+ Y +  PIR    + +  +   +F    ++++ I +
Sbjct: 1   MLDFIKGKVITVKPDKIVIQTGGIGYSVKIPIRVSRYINR-DEETQIFTSLIVKEESIEI 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +R  F  L  + G+G ++A+ +LS      L + I  ++ K +++IPGI  K 
Sbjct: 60  YGFLESSERDLFEELIKIAGIGPKMAINILSTYDRETLYKIIDHEDIKSLSKIPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+G   SL     Q                    + +SAL+NLGY + +A   
Sbjct: 120 AQRILLELRGILPSLQYEKDQ-----------------KYDDILSALLNLGYKRLEAKEV 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   EK   D++ IIR +L  ++
Sbjct: 163 LDKIYNNEK---DEATIIRESLSILA 185


>gi|303328183|ref|ZP_07358621.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3]
 gi|302861513|gb|EFL84449.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3]
          Length = 203

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   + +  LI    GV Y +  P  TL+ L   G+   L+    +R+D + 
Sbjct: 1   MIAYLEGRLAETWGNACLIVTEGGVGYEVALPAHTLAALPDRGEQLALYTSLAVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  +RQ F +L S+  VGAR A+ +LS     +L   ++  +   + ++ GI  K
Sbjct: 61  LFGFASFEERQTFEVLVSISKVGARTALAILSIFRPDDLRRLVLEDDVLALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  +  ELK K           ++   +         S   + +  L NLGY +++   
Sbjct: 121 TAQHVFLELKYKLKVEDVPQAAVLAASGRP-------GSVFRDVLDGLANLGYAEEECAP 173

Query: 180 AVVSVLKKEKNI 191
            V  +L +E ++
Sbjct: 174 LVKKILHEEPDL 185


>gi|271967390|ref|YP_003341586.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium
           roseum DSM 43021]
 gi|270510565|gb|ACZ88843.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium
           roseum DSM 43021]
          Length = 206

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 14/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D  +++V GV  +++C   TL+ L ++G+   L     +R++ + L
Sbjct: 1   MIASVRGRVAAIAPDGAVVEVGGVGMLVHCTPGTLATL-RVGEEARLATSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R  F +LQ+  GVG +VA+ +L+  T   L  ++   + K + ++PG+  K 
Sbjct: 60  FGFGSDDERGVFEMLQTANGVGPKVALAMLAVHTPNALRMAVASADVKALTRVPGVGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +           VN       + P++     S LV LGY    A  A
Sbjct: 120 AQRIIVDLKDKLGTPDQ-------AVNAALNGGAAAPAWRDQVHSGLVGLGYSARDADEA 172

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      E      + +++ ALRA+S
Sbjct: 173 VAAVTPQADIEVAEGRSPQVATLLKAALRALS 204


>gi|186683711|ref|YP_001866907.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102]
 gi|186466163|gb|ACC81964.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIEGL---YEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+     + V++  +V G+ Y +  P R  + L + G    +F    +R+
Sbjct: 19  MISYLKGIVAGIQTIGANRVILTLEVNGLGYDLQVPQRLANQLPESGGVAQIFTHFQIRE 78

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L +V G+GA +A+ +L  +   +LV++II  N++++ Q PG
Sbjct: 79  EVPYLYGFASPAERDLFRHLLTVTGIGAALAIALLDTLELPDLVQAIIAGNTQILIQAPG 138

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  KIA RI  ELK K +         ++            P         L  LGY   
Sbjct: 139 VGKKIAERICLELKSKLVEWRKSAGFFVATGGP-------APGILEEVQMTLFALGYTAH 191

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207
           + + A+  V +       A     I+ A+  +S 
Sbjct: 192 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLSS 225


>gi|254478024|ref|ZP_05091408.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum
           DSM 12653]
 gi|214036028|gb|EEB76718.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum
           DSM 12653]
          Length = 187

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE +  D+V+ID  G+   I+ P  T+  L   G+   L+   ++R+D  ++
Sbjct: 1   MIEYIRGIIEDIGPDHVIIDFMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F  L SV GVG + A+ +LS +     ++++   + K++   PGI  K 
Sbjct: 61  FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      V ++D       +A +                 GY + +A  A
Sbjct: 121 AERIILELKDKVPKEVVVPKEDSLLNEALEALLAL---------------GYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V     N     Q ++ AL+ ++
Sbjct: 166 LSDV-----NCESVEQAVKEALKKLA 186


>gi|20807635|ref|NP_622806.1| Holliday junction resolvasome DNA-binding subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|22001976|sp|Q8RAN3|RUVA_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|20516178|gb|AAM24410.1| Holliday junction resolvasome DNA-binding subunit
           [Thermoanaerobacter tengcongensis MB4]
          Length = 187

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE +  D+V+ID+ G+   I+ P  T+  L   G+   L+   ++R+D  ++
Sbjct: 1   MIEYIRGIIEDIGPDHVIIDLMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F  L SV GVG + A+ +LS +     ++++   + K++   PGI  K 
Sbjct: 61  FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      V ++D       +A +                 GY + +A  A
Sbjct: 121 AERIILELKDKVPKEVVVPKEDSLLNEALEALLAL---------------GYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V     N     Q ++ AL+ ++
Sbjct: 166 LSDV-----NCESVEQAVKEALKKLA 186


>gi|28493235|ref|NP_787396.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str.
           Twist]
 gi|28476276|gb|AAO44365.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str.
           Twist]
          Length = 222

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 108/205 (52%), Gaps = 15/205 (7%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +E +    V++++ G+ +++  P        ++     L+    +R+D + L+
Sbjct: 30  IASLSGLLEAVRPGSVVVNMHGIGFLVRVPQSFN---PEVDAEVKLYTSLQVREDSVSLY 86

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF S L+   F  L ++ GVG RVA+ +LS +T  E+  +++  + K + ++ G+  K+A
Sbjct: 87  GFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLA 146

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
             I+ +L GK  S+    ++    V++           +   + AL+ LG+ + ++  AV
Sbjct: 147 GTIVLQLAGKLTSVPLENRKQEQAVDR-----------SAEIVQALIGLGWQRQESAAAV 195

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
            SVL+K++++    +I+R ALR ++
Sbjct: 196 ESVLEKDQSLT-MPEILRNALRYLA 219


>gi|295107077|emb|CBL04620.1| Holliday junction DNA helicase subunit RuvA [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 199

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G       IDV GV Y +     +LS L + G    +     +R D I L
Sbjct: 1   MIAFLKGRLAGKTAAAAFIDVNGVGYAVGMSQASLSKLPEAGASVEVHTYLQVRDDAIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  ++  F  L  V GVG +VA+  LS  T   LV +I  Q+   +++IPG+  K 
Sbjct: 61  YGFMTVEEKALFERLIGVGGVGPKVALAALSVFTPQALVAAIAAQDVAAVSKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG      S+ Q   S  ++ +A           A  AL+++G+   +A  A
Sbjct: 121 ASRIILELKG------SLDQGLASLFDEGEAPAARAAEQLRGAHEALLSMGFTAAEADLA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
               LK       DS +++ AL+ +  
Sbjct: 175 ----LKGAPEGVSDSAVLQYALKRLGT 197


>gi|293375246|ref|ZP_06621530.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909]
 gi|325840674|ref|ZP_08167125.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1]
 gi|292646144|gb|EFF64170.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909]
 gi|325490238|gb|EGC92572.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1]
          Length = 195

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 21/204 (10%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              +KG +    +D+V+I+V G+ Y +Y          +  +   +F    + ++ + L+
Sbjct: 11  YAYLKGTVAYSAKDFVVIEVAGIGYKVY-TANPYEF--RKDEATQVFTHQVVSENDLSLY 67

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +   F+ L S +G+G + A  +L+    + L  +I   ++K + + P I  K A
Sbjct: 68  GFKTLEEHDLFINLISARGIGPKTACAILAMKDMSGLRHAIENGDAKYLCKFPKIGPKTA 127

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            +I+ +LKGK +   + +                + +    A+ AL  LGYG  + T  V
Sbjct: 128 QQIILDLKGKLVVPDAAIF---------------VNNSLSEALEALQALGYGDKELTK-V 171

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            +  K     A   +II+  L+ +
Sbjct: 172 KNAFKD--TDASVDEIIKKGLQLL 193


>gi|94984833|ref|YP_604197.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM
           11300]
 gi|122986676|sp|Q1J0F6|RUVA_DEIGD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94555114|gb|ABF45028.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM
           11300]
          Length = 198

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  + E   +I   GV Y ++CP  TL  L   G    L +   +R+D   L
Sbjct: 1   MIAYLSGAVREVREASAVIVAGGVGYEVFCPASTLGRLV-PGQPAELNIRHVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL     + F LL  V GVG ++A+ +LS +  T + + ++  + K+++ + G+  K 
Sbjct: 60  FGFLDTDSLRLFDLLIGVSGVGPKLALSLLSALPVTAVAQGLLSGDVKLLSSVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K        +   +             +   +AI AL+ LG+ + Q  + 
Sbjct: 120 AERLVLELQNKVP------EHLAAGAPVSAGKAALTSTAGRDAIEALLALGFREPQVRSV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L  +   + D+ +IR  L  +
Sbjct: 174 VAELLAADPEQSADA-LIRKGLGKL 197


>gi|78777407|ref|YP_393722.1| Holliday junction DNA helicase motor protein [Sulfurimonas
           denitrificans DSM 1251]
 gi|123727548|sp|Q30R94|RUVA_SULDN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78497947|gb|ABB44487.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas
           denitrificans DSM 1251]
          Length = 188

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      +V +DV GV Y ++  +++ S L   G+   LF    +R+D   L
Sbjct: 1   MIVGVRGVLVSKEPSFVHVDVGGVVYEVFISLQSFSALS--GNEVKLFTSHVIREDAQLL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +++ F  L  + GVG +VAM + S  T ++    +  ++   + ++PGI  K 
Sbjct: 59  YGFLELGEKKLFERLIKINGVGPKVAMAICSTYTPSQFAVVLNNKDITAVQRVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL G    L     +  S                  A  AL +LG+ +D+ + A
Sbjct: 119 AGRILVELSGFDTELIISASEPKSLA-------------VAQASEALESLGFKKDKISKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S      +  D + +++ AL+ +
Sbjct: 166 LGS-----CSAVDTAILVKEALKLL 185


>gi|317124983|ref|YP_004099095.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum
           DSM 43043]
 gi|315589071|gb|ADU48368.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum
           DSM 43043]
          Length = 201

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D V++ V GV  +++    T + L +IG    L     +R+D + L
Sbjct: 1   MIASLSGTVLKAGLDSVVVAVGGVGMLVHTTPATAAAL-RIGQPADLATTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F  +Q+V GVG R+A+ VL+    T +  ++   +   + ++PGI  K 
Sbjct: 60  YGFATEEEKHVFETVQTVSGVGPRLALAVLAVHDPTSVRRALGSGDIAALTKVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +L+           +          +      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDKLGALAGSSDGASIGHQRMDGE-----PWREQVREALVGLGWTVRQADDA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +  + A  S ++R ALR +
Sbjct: 175 LDRVAPQAADGASVSAMLRAALREL 199


>gi|152990842|ref|YP_001356564.1| Holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2]
 gi|166230575|sp|A6Q3Z8|RUVA_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151422703|dbj|BAF70207.1| holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2]
          Length = 184

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      Y+ I+V GV Y ++  +   + + K      L     +R+D   L
Sbjct: 1   MIVGLVGEVLKKEPTYLHIEVGGVVYEVFISLNASAAIDK--KQIRLHTTHIIREDSESL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +++ F  L  + GVG +VA+ + S     E V+ +  +N  ++ ++PGI  K 
Sbjct: 59  YGFVDINEKKMFDRLIKLNGVGPKVAIAICSTFKPQEFVQIVQQKNVAMLKKVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL                    + +      S    A  AL +LG+ ++Q   A
Sbjct: 119 AQRILVEL-----------------GEFDISESNVTSSAFQEASMALQSLGFKKEQIQKA 161

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +     +E    D + +++ AL+ I
Sbjct: 162 L-----QECTATDTASLVKEALKKI 181


>gi|256831252|ref|YP_003159980.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM
           4028]
 gi|256580428|gb|ACU91564.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM
           4028]
          Length = 198

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +    E+  VL+   GV Y ++     L+ L   GD   LFV T +R+D + 
Sbjct: 1   MIAYLEGTVLRRDEESCVLLTAGGVGYQLHLTSDGLAALPGAGDTARLFVHTLVREDALT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LF F S  +RQ F+ L     +G + A+ +L   +  EL   I  ++   ++++PGI  K
Sbjct: 61  LFAFSSWEERQAFVTLLGAPKLGPKTALAMLGCYSPAELAACIAKEDVAALSRVPGIGAK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R           L  +  + +S  +         P+ + +  +ALV+LGYG+ +   
Sbjct: 121 TAKR----------LLLDLKDKLVSSPSLLPGRTAPAPTASADCAAALVSLGYGRHEVDE 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            V  V +KE ++ D    IR AL+  + 
Sbjct: 171 VVRVVFEKEPDL-DAGSAIRQALKIFAS 197


>gi|58617428|ref|YP_196627.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Gardel]
 gi|75356743|sp|Q5FG40|RUVA_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58417040|emb|CAI28153.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Gardel]
          Length = 191

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 119/207 (57%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR- 59
           MIG I GN+E + + Y++++V  + YIIY   + L    K+GD   L++ET++ +D I  
Sbjct: 1   MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQT-CKVGDNIKLYIETYVNRDNITQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  ++ +F +L ++ G+  + A+ +LS+++  ++  +++  + K+  +  GI  K
Sbjct: 60  LYGFLNRQEQDYFKMLVTINGINYKTALSILSKLSPEQIFSAVVNND-KIAFKGNGIGEK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TEL+ K   +   +++  S +  +            ++++AL++LGY + +A  
Sbjct: 119 LAGRIITELQYKINKMP--IEETFSIIEND------------DSLAALISLGYEKLKAFN 164

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +  K  + A   ++IR AL+ +S
Sbjct: 165 VIQEIKSKTPD-ASTQEVIRKALQKLS 190


>gi|304320107|ref|YP_003853750.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis
           HTCC2503]
 gi|303299010|gb|ADM08609.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis
           HTCC2503]
          Length = 202

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  +  +IDV GV Y +    R LS L + G    L  ET + +  IRL
Sbjct: 1   MIAALHGTVSVLSGENAIIDVNGVGYEVAATPRLLSSLAQ-GQEVRLITETLVAETYIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
             F +  +R  F LLQ+VQGVGA+ A+ +LS +T  +L +++   +  ++A+  G+  K+
Sbjct: 60  VAFQTIEERLTFRLLQTVQGVGAKAALAILSALTPADLFDAVEAGDKAMVARAQGVGPKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELKGK      +V    +  +       ++ S A +A++ALV LG+    A   
Sbjct: 120 ALRIVTELKGKC---GGIVGAFPAVASPRATSAAAVDSPAEDAVAALVALGFDHGAARRT 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + ++   +   +    +I   L+ ++ 
Sbjct: 177 ISTL--PDLETSRTEDLITAGLKTLAA 201


>gi|33862917|ref|NP_894477.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str.
           MIT 9313]
 gi|44888415|sp|Q7V7T9|RUVA_PROMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33634833|emb|CAE20819.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9313]
          Length = 225

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 15/221 (6%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     ++      V++   GV Y +    R LS +    +   L++    R D
Sbjct: 1   MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F  L  V GVG ++A+ +L      ELVE+I+  + + + Q  G+
Sbjct: 61  GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+ K    S          N          S        L  LGY   +
Sbjct: 121 GKRTAERLAVELRTKLAEFSCRDPGMSLVDNGVIDSHQLKDSSLHELQITLGGLGYEDLE 180

Query: 177 ATTAVVSVLKKE-----------KNIADDSQIIRLALRAIS 206
              A+ +V                +I D    +R +LR +S
Sbjct: 181 IRRAIRAVASGAAIGASDMPESVPSIDDTDAWLRASLRWLS 221


>gi|307299266|ref|ZP_07579067.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915062|gb|EFN45448.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 197

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +  + E  ++I V G+ + + C   T+S L    D   L    + +     L
Sbjct: 1   MLEGIEGRVREIRETEIVIQVGGLFFKVNCTPNTISKLPVEKDVYLLTFMAYSQDRPPEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F +L     +G + AM +LS  + + +   I  +N+  ++ +PGI  K 
Sbjct: 61  YGFYDQEEKELFNILLRASKIGPKSAMKILSSASPSRIKHIISTKNAAELSSLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL             D S +  E+       S    A++AL +LG+ ++Q+   
Sbjct: 121 AERMIVEL---------ASLVDTSGITDEETIPGVERSHGEEAVAALTSLGFDENQSRKV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +LK E+ I D   +I+ AL+ I
Sbjct: 172 VIEILKAEREI-DTHDLIKKALKEI 195


>gi|298346872|ref|YP_003719559.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii
           ATCC 43063]
 gi|304389423|ref|ZP_07371386.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|298236933|gb|ADI68065.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii
           ATCC 43063]
 gi|304327233|gb|EFL94468.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 194

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +     D   + V G+         TL+ L   G   T+     +R+D + L
Sbjct: 1   MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLATLV-PGTTATVQTYLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V+G+G ++ +  LS ++   L  ++   +   +  IPG+  K 
Sbjct: 60  YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K   +S V     +      +            + AL NLGY Q  AT A
Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQALATEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V +V     + +D    +R AL+ +  
Sbjct: 170 VNAV-----SASDAPTALREALKYLGS 191


>gi|315655417|ref|ZP_07908317.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii ATCC 51333]
 gi|315490357|gb|EFU79982.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii ATCC 51333]
          Length = 194

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +     D   + V G+         TL+ L   G   T+     +R+D + L
Sbjct: 1   MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALV-PGTTATVQTYLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V+G+G ++ +  LS ++   L  ++   +   +  IPG+  K 
Sbjct: 60  YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K   +S V     +      +            + AL NLGY Q  AT A
Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQAIATEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V +V     + +D    +R AL+ +  
Sbjct: 170 VNAV-----SASDAPTALREALKYLGS 191


>gi|253581541|ref|ZP_04858766.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC
           27725]
 gi|251836611|gb|EES65146.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC
           27725]
          Length = 198

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +E    DY+ +DV GV Y +   +RT   +   G+   L++  ++++D  +L
Sbjct: 1   MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFINA-GEEVKLYIYNYIKEDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R  F +L  V+G+G  +A+ V+S      + + +   +   + ++P +  K 
Sbjct: 60  IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYNNLKRVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + +++ +LK K  +L      D   ++                ISAL  LGY + +  T 
Sbjct: 120 SQQLILDLKSKLKTL------DALSIDTRNDDAARHLMIEEELISALEGLGYSKKEINTL 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    ++ K+     + I+  L+ ++
Sbjct: 174 ITR--EELKSFKTIEEAIKGVLKKVN 197


>gi|67922170|ref|ZP_00515685.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501]
 gi|67856070|gb|EAM51314.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501]
          Length = 210

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 98/214 (45%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI  +KG    + ++      ++++V  + Y +  P +    + +   +   +F    ++
Sbjct: 1   MISYLKGIPIEVIKNTNNRIILVLEVNKIGYELQIPSKLARDISQYDLENIQVFTYLQIK 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +  +R+ F  L SV G+GA+ A+ ++  +   ELV++I+  N + ++Q P
Sbjct: 61  EDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRTLSQTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A RI  EL+ K      +V   ++      +          +    L+ LGY  
Sbjct: 121 GVGKKTAERIALELRTKLSQWRKLVGGTVAS-----SSAMPSLDILEDIEMTLLALGYTN 175

Query: 175 DQATTAVVSVLKKEKNI--ADDSQIIRLALRAIS 206
           ++   AV ++ +    +      + I+  +  +S
Sbjct: 176 EEINKAVSTLSQDNLMLKNTSTEEWIKEVIAWLS 209


>gi|323698439|ref|ZP_08110351.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. ND132]
 gi|323458371|gb|EGB14236.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           ND132]
          Length = 206

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G +    E  +++    GV Y +  P   L+ L   G    LFV T + +  I 
Sbjct: 1   MIGYLLGELLSADEKGLVLLTPGGVGYEVAAPTSVLAKLPGRGQEVRLFVHTQVGEKAID 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL+  D   F  L S+  +G + AM +LS   A  L E    ++   ++ +PGI  K
Sbjct: 61  LFGFLTADDLDLFRTLISLDKLGPKKAMAILSMFDAAHLREIAFREDVNTLSTVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LK K   L  V  +  +     Q          ++A++ L  LGYG+D+   
Sbjct: 121 SAKQILWNLKDKVDKLKPVTGRGSAADQGRQGPQGEY----LDALAGLKGLGYGEDEIRP 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            ++    +E ++ D +  IR  L+ I+ 
Sbjct: 177 MLIETFDEEPDL-DAAGAIRAVLKKINA 203


>gi|224541319|ref|ZP_03681858.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525756|gb|EEF94861.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM
           15897]
          Length = 204

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I GLY D+++ID  G+ Y ++          K GD  T+++   +++D + L
Sbjct: 19  MYSYIKGIIAGLYSDHIVIDNHGIGYEVHVSNPYNF---KKGDDATVYIYQQVKEDDLTL 75

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L  V+G+G + A+G+L+      ++++I  +N   + +IPGI  K 
Sbjct: 76  FGFKKKEEKELFQKLILVKGIGCKTAIGILATGEIDAIIDAIEGKNIAYLKKIPGIGPKA 135

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L GK                  +A           A   L+ LGY Q     A
Sbjct: 136 AQQIILDLHGKFDK---------------RAMKPLGSPDYEEATEVLIALGYKQSDVEKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VL  E    D +  ++ AL  +
Sbjct: 181 M-KVLSSEN--LDTNGYVKRALALL 202


>gi|169836412|ref|ZP_02869600.1| Holliday junction DNA helicase, subunit A [candidate division TM7
           single-cell isolate TM7a]
          Length = 192

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 12/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I   +   ++IDV G+ Y ++  +     L  +G+    +   H+R+    L
Sbjct: 1   MIAHVRGKISEKFNGSIIIDVNGLGYELFVSVVDFD-LVNLGESVKFYTYHHVREQSEEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F +L SVQGVG + A+ +LS      +  +I   N+  I +  G+  K 
Sbjct: 60  FGFSTLSAKKIFEMLISVQGVGPKAALAILSLGNVETVRNAIANSNAGFIQKASGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L  K       V       N  +    +  + +  A+ AL+ LGY    A+ A
Sbjct: 120 ADRVVVDLHDK-------VGLPTKYENSNEIIENNQLNSSDEAVEALMALGYTLADASEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + ++          ++ +  AL+ 
Sbjct: 173 LKNI----DTDLSTAERVTKALQQ 192


>gi|262037466|ref|ZP_06010926.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii
           F0264]
 gi|261748501|gb|EEY35880.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii
           F0264]
          Length = 213

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 8/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     DYV +D+ G+ Y I+  ++T   LG+ G    L+V TH+++D I  
Sbjct: 1   MFEYIFGELTVKKIDYVALDINGLAYKIFISLKTFEALGETGQDEKLYVHTHVKEDDISF 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R+ F  L S  GVG ++ + +LS     +++  +I  NSK+  ++PG+  K 
Sbjct: 61  YGFKTENERELFKALISTSGVGPKLGLAILSTYNVKDVINIVIESNSKLFTKVPGLGDKK 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174
           A +I+ +LK K   L+ +   + +    +   I S  S         +   AL +LGY  
Sbjct: 121 AQKIILDLKDKVKKLNIIETYNENGEISKGNPIVSDTSNTKILLMKEDIKLALESLGYLN 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +  +    ++   I D  + I+  L+ I
Sbjct: 181 ADVSKWIKD--EELSQINDIGEAIKSILQKI 209


>gi|297566125|ref|YP_003685097.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946]
 gi|296850574|gb|ADH63589.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946]
          Length = 193

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  +KG      E+ V++ V G    ++CP  TL+ L + G+   L  +  +R+D + L
Sbjct: 1   MVRYLKGTALRKTENSVILLVGGFGLEVFCPTTTLTHLPEEGE-IALHTKLVVREDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF      + F +L  V GVG +V + +LS ++   L  ++   + +++    G+  K+
Sbjct: 60  YGFADQRSLELFEMLLGVSGVGPKVGLNLLSSLSPALLARALADGDIRLLTGAQGVGRKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+GK              +  E   I   P     A  ALV LG+ ++Q  +A
Sbjct: 120 AERIALELRGKVP----------PHLMGEAGPILRRPQ-TEEAELALVTLGFRENQVRSA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++++    A   +IIRLAL+A+
Sbjct: 169 VAQIVQQNPE-ASTQEIIRLALKAL 192


>gi|317154312|ref|YP_004122360.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944563|gb|ADU63614.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 203

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +   ++  +++    GV Y +  P   L+ L   G   +LFV T + +  I 
Sbjct: 1   MIGYLQGTLLAAHDKGLVLLTPGGVGYEVAAPTSVLARLPGRGGEVSLFVHTQVGEKAID 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL   D   F  L S+  +G + A+ +LS   A  L E    +++  ++ +PGI  K
Sbjct: 61  LFGFLESDDLDLFRTLISIDKLGPKKALAILSMFDAEHLREVAYREDATTLSTVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LK K   LS    +  + V   +          ++ ++ L  LGY +D+   
Sbjct: 121 SAKQILWHLKDKVNKLSPAPSRGSAKVEGPRGE-------YLDTLAGLKGLGYSEDEVRP 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
            ++ +   E ++ D +  IR  LR I+ 
Sbjct: 174 MILEIFDAEPDL-DAAGAIRATLRKIAA 200


>gi|170017578|ref|YP_001728497.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20]
 gi|229560098|sp|B1MZV1|RUVA_LEUCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169804435|gb|ACA83053.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20]
          Length = 196

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 17/208 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +Y  Y++I D  GV Y ++   P R      +      ++VE  +R+++
Sbjct: 1   MYEYINGLITNIYPAYLVIADRSGVGYKLFVANPYRF-----EQNVESHVYVEQIVRENE 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + L+GF+ + ++  F  L +V G+G + A+ +L+   A  LV ++   ++  + Q PG+ 
Sbjct: 56  MTLYGFIDENEKYLFNKLLNVSGIGPKSALAILASDDAAGLVTAVANDDASYLTQFPGVG 115

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +I+ +LKGK   L+      +  V        +    A+       +LGY     
Sbjct: 116 KKTAQQIVLDLKGKLDDLALSAGMTVETVPTTDNQALADALAALE------SLGYSAKDV 169

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              + +VL  +K+  D    IR AL+ +
Sbjct: 170 AK-LQTVLANQKDTTDG--YIRSALKFL 194


>gi|289449412|ref|YP_003475227.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289183959|gb|ADC90384.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 206

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK--IGDFCTLFVETHMRQDQI 58
           M   I G  + +    V+I+  G+ Y +  P      L     GD   +F   ++R+D  
Sbjct: 1   MYAYINGEYKYVDAGSVVIECNGIGYTLLMP-----KLPAWTAGDKVKVFTYLYVREDIF 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S      F +L  V  +G ++A+ +L  IT  +   +I+  + K++  I G+  
Sbjct: 56  ELYGFASQEQLNLFKMLIGVNKIGPKLALQILGSITPEQFALAILRNDLKILTSIKGLGK 115

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQ 176
           K A R++ +L+ K     S   +  + +   + Q     +       + AL  LGY    
Sbjct: 116 KNAERLVIDLRDKLKKAGSPSAKASTGLTSLETQEDTIDVADDFSAVVEALTLLGYDYKT 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           +     +V   E    D +Q IRLALR
Sbjct: 176 SVKQAKAVFDPE---LDLNQNIRLALR 199


>gi|218281325|ref|ZP_03487813.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989]
 gi|218217510|gb|EEC91048.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989]
          Length = 192

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 21/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  D V++DV GV Y +Y     LS   K+ +   L+   H+R+D I L
Sbjct: 1   MIAFVNGIVKIIRNDRVVLDVHGVGYEVYL-ANALSQ--KMNEELFLYTYQHVREDAILL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+ + D + FM L +V+G+G + A  +LS  +  E++E+I   + K +  +PGI  K 
Sbjct: 58  FGFIKEEDYEVFMRLINVKGIGPKTAQTMLSVCSGKEMIEAIENDDIKRLKSLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK +SL             E +              AL++LGY  +Q    
Sbjct: 118 AGQIVLDLKGKFVSL-------------ETSDSPVSNPVWTQVQDALLSLGYKTNQ---- 160

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +  + K+ E     + +++R AL  ++
Sbjct: 161 LTKIKKEFENTELGEDEMLRQALILLA 187


>gi|295099824|emb|CBK88913.1| Holliday junction DNA helicase subunit RuvA [Eubacterium
           cylindroides T2-87]
          Length = 193

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 110/208 (52%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D V++DV GV Y ++      +   KIGD   L+   H+R+D + L
Sbjct: 1   MIAFVSGIVRLIRTDSVVLDVHGVGYEVFISN---ALTQKIGDELFLYTYQHVREDAMLL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   D + FM L +V+G+G + A  +L+    ++++++I   + K++  +PGI  K 
Sbjct: 58  YGFIKQEDYEVFMRLINVKGIGPKTAQTMLAVCPGSKMIQAIEEDDVKLLKSLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +S+ +  +   + V KE                ALV LGY  +Q    
Sbjct: 118 ASQIVLDLKGKFVSVETKEETISNPVWKETQ-------------EALVALGYKVNQ---- 160

Query: 181 VVSVLKKEKNIAD--DSQIIRLALRAIS 206
           +  V K+  N  D   ++++R+AL  ++
Sbjct: 161 LSGVRKELANKTDLNVNEMLRMALAILA 188


>gi|315656670|ref|ZP_07909557.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492625|gb|EFU82229.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 194

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +     D   + V G+         TL+ L   G   T+     +R+D + L
Sbjct: 1   MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALV-PGTTATVQTYLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V+G+G ++ +  LS ++   L  +++  +   +  IPG+  K 
Sbjct: 60  YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVVNSDVAALQGIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K   +S V     +      +            + AL NLGY Q  AT A
Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQALATEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V +V     + +D    +R AL+ +  
Sbjct: 170 VNAV-----SASDAPTALREALKYLGS 191


>gi|326693304|ref|ZP_08230309.1| Holliday junction DNA helicase RuvA [Leuconostoc argentinum KCTC
           3773]
          Length = 197

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 16/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           M   I G I  +Y  Y+++ D  GV Y +Y   P R      +      ++VE  +R+++
Sbjct: 1   MYEYINGLITNIYPAYIVVCDRSGVGYKLYTANPYRF-----EQNVESHVYVEQIVRENE 55

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I L+GF+ + ++  F  L +V G+G + A+ +L+   A  LV ++   +   + Q PG+ 
Sbjct: 56  IALYGFMDENEKILFNKLLNVSGIGPKSALAILASGDAQGLVNAVANDDVSYLTQFPGVG 115

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +I+ +LKGK   L+     D++       +     + A        +LGY   + 
Sbjct: 116 KKTAQQIILDLKGKLGDLAVSAGLDLTTSQPAANNQALADALAAL-----TSLGYSAKEI 170

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +  +  D    IR AL+ +
Sbjct: 171 AK-IEKTLAQTADTTDG--YIRSALKLL 195


>gi|309805314|ref|ZP_07699365.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           09V1-c]
 gi|308165390|gb|EFO67622.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           09V1-c]
          Length = 167

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIINPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +   
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK 167


>gi|330896128|gb|EGH28349.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 128

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 67/117 (57%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+ 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVG 117


>gi|221632653|ref|YP_002521874.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM
           5159]
 gi|254767395|sp|B9KYT2|RUVA_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221156321|gb|ACM05448.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM
           5159]
          Length = 191

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       VL+DVQGV + +     TL  LG+ GD  +L     +R+D++ L
Sbjct: 1   MIRGVRGTLVAKRSGEVLVDVQGVTFRVQTSATTLQELGEPGDLVSLVTHLIVREDELAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+ L +V GVG R A+ +LS      L E I  +  + +A+ PGI  K 
Sbjct: 61  YGFATEAELELFLSLLAVSGVGPRGALNLLSLAAPDRLTEWIRGERIEELARAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL+G+  +L+ V   +                     ++AL  LGY   +A  A
Sbjct: 121 ASRIVLELRGRLPALTEVQAGE---------------PIDQELVAALQALGYTAQEARQA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +   + +      + I  ALR ++
Sbjct: 166 --ATHPEVRRAPSLEERIVAALRQLA 189


>gi|296393859|ref|YP_003658743.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
           44985]
 gi|296181006|gb|ADG97912.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
           44985]
          Length = 199

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G    +  D+V+++  G+ + +     T +   + G    L     +R+D   L
Sbjct: 1   MIASIRGEAVEVGADHVVVECAGLGHHVVVLPSTAAAATR-GAEVRLATSFIVREDAQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +L++V GVG ++AM VLS +    L  +I   +   + ++PG+  ++
Sbjct: 60  YGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPVALRRAIGEGDLGALTKVPGVGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K     S      +                   +  LV LG+    A +A
Sbjct: 120 AERLALELKEKIGGPPSAAANLGAPEGS--------ALVRQQVVDGLVGLGFPLKPAESA 171

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
             SV+++    A  +  +R AL
Sbjct: 172 ADSVMQENPE-ASPAVALRGAL 192


>gi|328881167|emb|CCA54406.1| Holliday junction DNA helicase RuvA [Streptomyces venezuelae ATCC
           10712]
          Length = 210

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 11/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV   + C   TL+ L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGVGMAVQCTPGTLAGL-RIGADARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L   +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRVAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++     +              V  ++A       +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLL----ELKDKLGAPLGSSGLVGAQRAAAAGPAPWTEQLSAALIGLGYASREAEEA 175

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +          A   Q++R AL++++
Sbjct: 176 VAAVTPQAEEAIAAGGAAPVPQLLRAALQSLN 207


>gi|294786921|ref|ZP_06752175.1| holliday junction DNA helicase RuvA [Parascardovia denticolens
           F0305]
 gi|315226557|ref|ZP_07868345.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia
           denticolens DSM 10105]
 gi|294485754|gb|EFG33388.1| holliday junction DNA helicase RuvA [Parascardovia denticolens
           F0305]
 gi|315120689|gb|EFT83821.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia
           denticolens DSM 10105]
          Length = 207

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G++  +  D +L+DV G+ + +  P R L+ L   G    +     + QD I L
Sbjct: 1   MIGSLEGDVLSVSADGLLLDVNGIGFSLRMPARDLAGLHAGGHE-RILTVMTVSQDAIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS   +  F  LQ V GVG + AM +LS ++  EL ++I   +   + + PG+  K 
Sbjct: 60  YGFLSASSKTLFTQLQKVSGVGPKAAMAILSTLSPEELGKAIHDNDVTALTRAPGVGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G      SV    +      +     + S     I  L +LG+ +  A  A
Sbjct: 120 AQKIILELHG------SVDFSSLDEAPASRVEEGGLDSSVDQVIQGLSSLGWQRRDAYQA 173

Query: 181 VVSVLKKEKNIADD-----SQIIRLALRAI 205
            +  L +    A        Q++R AL  +
Sbjct: 174 TMEALGQLSLTAPLTAGQIPQVLRKALSDL 203


>gi|108804162|ref|YP_644099.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter
           xylanophilus DSM 9941]
 gi|123069128|sp|Q1AWE1|RUVA_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|108765405|gb|ABG04287.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter
           xylanophilus DSM 9941]
          Length = 196

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     + V++D  GV Y    P+ TL  L  +G+ C +     +R+D + L
Sbjct: 1   MIDRLRGQLVEKDPEGVVVDCGGVGYRAAAPLSTLRALPAVGEECVVHTRMVVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L SV  VG R+A+ VLS +T  +++E+    +    A +PG+  K 
Sbjct: 61  FGFATREEREAFDALTSVSKVGPRLALAVLSAMTPGQMMEAAARGDVHRFAAVPGLGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+G+         +  +                + A  AL  LGY  ++A  A
Sbjct: 121 AERLVLELRGR---------ELAAAGGGGGVAAGEGDGPFMEAREALTGLGYSLEEAERA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +E       Q I+ ALR I
Sbjct: 172 LRDVPPQE----TVEQYIKAALRKI 192


>gi|256391548|ref|YP_003113112.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM
           44928]
 gi|256357774|gb|ACU71271.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM
           44928]
          Length = 208

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 19/215 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +++V GV  +++C   TL+ L  +G+   LF    +R+D + L
Sbjct: 1   MIAFVSGPVAAVTPTSAVVEVGGVGMLVHCGPGTLAAL-AVGEKAKLFTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R  F LLQ+  G+G +VA  +LS      L    +  +   + Q+PGI  K 
Sbjct: 60  YGFATDDERTVFELLQTASGIGPKVAQAMLSVHAPDTLRTIFMTGDEAALTQVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A         + +          +     QAH       + S+ +  + AL  LG+   +
Sbjct: 120 AQ--------RLLLELKERLGPPTGAVPGQAHNGWSRAGLGSWRVQLLEALTGLGWTARE 171

Query: 177 ATTAVVSV--LKKEKNIAD----DSQIIRLALRAI 205
           A  AV +V  L  E+  A        +++ ALR +
Sbjct: 172 ADDAVSAVGPLAAEQEAAGQTVQLGPLLKAALRTM 206


>gi|124023288|ref|YP_001017595.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963574|gb|ABM78330.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9303]
          Length = 233

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 85/221 (38%), Gaps = 15/221 (6%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     ++      V++   GV Y +    R LS +    +   L++    R D
Sbjct: 9   MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 68

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F  L  V GVG ++A+ +L      ELVE+I+  + + + Q  G+
Sbjct: 69  GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 128

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+ K    S          N          S        L  LGY   +
Sbjct: 129 GKRTAERLAVELRTKLAEFSCRDPGMSLVDNGVIDSHQLKDSSLHELQITLGGLGYEDLE 188

Query: 177 ATTAVVSVLKKE-----------KNIADDSQIIRLALRAIS 206
              A+ +V                 I D    +R +LR +S
Sbjct: 189 IRRAIRAVASGAAIGARDMPESVPAIDDTDAWLRASLRWLS 229


>gi|257126622|ref|YP_003164736.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis
           C-1013-b]
 gi|257050561|gb|ACV39745.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis
           C-1013-b]
          Length = 207

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     DYV +D+ G+ Y IY  ++T   +  I     L++ T++++D I L
Sbjct: 1   MFEYICGKLSVKKIDYVALDINGLAYKIYISLKTFEKMSNIESTEKLYIHTNVKEDNISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L SV GVG ++A+ +LS     E+V+ I+    K+  ++PG+ +K 
Sbjct: 61  YGFKTQNERELFKALISVNGVGPKLAIAILSTFNTKEIVDIILENEPKIFIKVPGLGIKK 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +I+ +LK K   L  S ++ ++ + +N        +     +   AL +LGY     +
Sbjct: 121 AQKIILDLKDKVKKLEFSEIINENSNTLNGNNISSSEILLMKEDLKLALESLGYADTDVS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             + +   +   I + S+ I++ L+ I
Sbjct: 181 KWIKN--DELIKIKNISEAIKIILKRI 205


>gi|119489537|ref|ZP_01622298.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106]
 gi|119454616|gb|EAW35763.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106]
          Length = 211

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 13/213 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG +KG +  + ++      +L++   + Y +    R ++ L  +G+   +F    +R+
Sbjct: 1   MIGYLKGTVVAIQKNNSNRVILLLETNNIGYEVQIVPRMIAQLPTMGESIQVFTHLQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           DQ+ L+GF S  +R  F  L SV G+G ++A+ +L+ +  TELV++I+ +N+KV+A+ PG
Sbjct: 61  DQMVLYGFSSFAERDLFRQLVSVSGIGTQLAIALLNTLELTELVQAIVGENTKVLAKTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K               +     +             L+ LGY   
Sbjct: 121 VGTKTAQRIALELKTKLAQWRQEAGLTTLVSSGLTVEV------QEEIEMTLLALGYTGS 174

Query: 176 QATTAVV--SVLKKEKNIADDSQIIRLALRAIS 206
           +   A+   S  ++  +     + I+ A+  ++
Sbjct: 175 EVMQALEFLSQEQQLSSQTSTEEWIKKAIAWMA 207


>gi|289641361|ref|ZP_06473526.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca
           glomerata]
 gi|289508823|gb|EFD29757.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca
           glomerata]
          Length = 264

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 8/183 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV  ++ C   TL+ L ++G    L     +R+ ++ L
Sbjct: 1   MIASVAGTVAALSPDAAVVEVGGVGLLVQCAPATLAGL-RVGQQARLVTTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  LQS  GVG R+A  VL   +   +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFADADERDVFETLQSASGVGPRLAQAVLGVHSPDSVRRAVAAEDLAALTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVV-------QQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A RI+ +L+ +                   +  +       +  +       AL+ LGY 
Sbjct: 120 AQRIVLDLRDRLGPPVPAPAAGDDGVGVGGAGGDGAAPAAGTGVTAGEQVRLALLGLGYT 179

Query: 174 QDQ 176
             +
Sbjct: 180 ARE 182


>gi|298491329|ref|YP_003721506.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708]
 gi|298233247|gb|ADI64383.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708]
          Length = 212

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIE---GLYEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG +     +  + V++  +V G+ Y +  P R  + L   GD   +F    +R+
Sbjct: 1   MISYLKGIVACIQAISSNRVILTLEVNGLGYDLQVPQRLANQLTTTGDVVQIFTHYQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+GA +A+ +L  +   ELV++II  N++++ Q PG
Sbjct: 61  EVPLLYGFSSPAERDLFRHLLSVTGIGAALAITLLDTLELPELVQAIIAANTQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K I         ++            P         L  LGY   
Sbjct: 121 VGKKTAERICLELKSKLIEWRKSAAFFVATGGP-------APGILEEVQMTLFALGYTAH 173

Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAISC 207
           + + A+  V +       A     I+ A+  +S 
Sbjct: 174 EVSHALHVVSENIGLPKDAYVEDWIKQAIGHLSS 207


>gi|46201286|ref|ZP_00055335.2| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 173

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 96/166 (57%)

Query: 40  KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           ++G   TLF+ET +R+D I LFGFL   +R WF LL +VQGVGA+V + +LS     +L+
Sbjct: 2   EVGSAATLFIETQVREDAISLFGFLDTGERDWFRLLTTVQGVGAKVGLAILSVAAPDQLL 61

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159
           + I  Q+   + +  G+  K+A RI+TELK KA  ++       +      A + +    
Sbjct: 62  QIIAAQDKAGLTRANGVGPKLAVRILTELKDKAGKIALGGFNPTAGAVASSAPLPAASGR 121

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             +A+SALVNLGY + +A  AV    ++  + AD S +IR +L+ +
Sbjct: 122 MEDAVSALVNLGYKRLEAFQAVGETARELGDDADSSALIRASLKRL 167


>gi|304440231|ref|ZP_07400121.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371280|gb|EFM24896.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 193

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG      E+ V I V G+  +I    R    + ++ +  TLF +  +R+D I +
Sbjct: 1   MIDIVKGIAILKEENSVTIMVGGIGLLINVSSRENKEI-RLNEEITLFTKMVVREDDISI 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL  V G+G +VAMG++      EL + I+  + K + + PG+  K 
Sbjct: 60  YGFISKRERSIFSLLTMVSGIGPKVAMGIMGMYGEEELRKYILSSDVKSLTKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK + + +      D+           S+P    +AI ALV LG+   +   A
Sbjct: 120 AERIILELKDRIVKIFGDFIPDVK---------ESVPLENDDAIEALVGLGFSAIEVKNA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +++V   + +++ D + I++AL+ I
Sbjct: 171 LMNV---DPSLSVDDK-IKIALKNI 191


>gi|111221574|ref|YP_712368.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a]
 gi|111149106|emb|CAJ60789.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a]
          Length = 252

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V GV  ++ C   TL+ L +IG+  +L     +R+ ++ L
Sbjct: 1   MIASLAGTVRALGPLSAVVEVGGVGLLVQCTPATLARL-RIGEPASLATTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +LQS  GVG ++A  VL       +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFPDADARDVFEILQSAAGVGPKLAQAVLGVHEPDAVRRAVAEEDLAALTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDM-------SCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A RI+ +L+ +                          A      + A     AL+ LGY 
Sbjct: 120 AQRIVLDLRDRLGPPRGAAVPGPRSGGADLGAGGVGAAGPGEAGAVADTVREALIGLGYS 179

Query: 174 QDQATTAVVSVLK 186
             +A  AV   L 
Sbjct: 180 AREADDAVSRALA 192


>gi|255263783|ref|ZP_05343125.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62]
 gi|255106118|gb|EET48792.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62]
          Length = 220

 Score =  184 bits (467), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 13/218 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D+VLIDV+GV Y++Y   R ++ L   G+   LF +  +R+D ++L
Sbjct: 1   MIGKIAGRIDYRAADHVLIDVRGVGYVVYVSDRVMASLPGNGEAVALFTDLLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ +M +L  I A  +  +I L +   IA   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASMAILGAIGAEGVSRAIALGDWAAIATAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI------------CSMPSFAINAISALV 168
           A R + +LK KA ++ ++         + +A                  +    A+SAL 
Sbjct: 121 AQRAVLDLKNKAHAVMAMGGTLAEAQGEVEAEGEVIETAAPKVTRSGNGAAQSEALSALG 180

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           NLGY    A  AV        + AD S++IR AL+ ++
Sbjct: 181 NLGYSPSDAAGAVAEASGGAPD-ADTSELIRAALKLLA 217


>gi|114798884|ref|YP_758880.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC
           15444]
 gi|114739058|gb|ABI77183.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC
           15444]
          Length = 207

 Score =  184 bits (467), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 5/207 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG++KG +  +  D+VLIDV GV Y+     R L+ L + GD  T  +ET + +  I LF
Sbjct: 3   IGRLKGEVAAIGLDHVLIDVNGVGYVALAGTRLLARL-QTGDAITAHIETRVTESSITLF 61

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
            F +D +R WF+ LQ V GV  + A+ +L  ++  +++++I L ++    +  GI  K+ 
Sbjct: 62  AFATDEERAWFVRLQDVPGVAGKSALAILDGLSPADIMDAIALGDAGAFTRAKGIGKKLG 121

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            RI+TEL GKA  L    + +++ V          +       A+SALVNLGY Q +A  
Sbjct: 122 ERIVTELAGKAPPLGRFGKFEVAAVAGLASAQPASAATGARGEAVSALVNLGYSQSEAAR 181

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV +  K      +   +++ AL+ ++
Sbjct: 182 AVAAAAKNGAE--EVGALVKGALKELA 206


>gi|194476717|ref|YP_002048896.1| putative holliday junction DNA helicase RuvA [Paulinella
           chromatophora]
 gi|171191724|gb|ACB42686.1| putative holliday junction DNA helicase RuvA [Paulinella
           chromatophora]
          Length = 215

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 97/212 (45%), Gaps = 7/212 (3%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  ++G +   ++    +  L++  G+ Y +Y   R    L K  +   L++   +R+ 
Sbjct: 1   MISWLRGELLKSWQQGTYNVALLNCGGIGYEVYLNRRDWEDLPKTREILELYIHMLVREK 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q  L+GF+   DR  F  + ++ G+G ++A+ + + +    L+E+II  +   + +  GI
Sbjct: 61  QWTLYGFIEFDDRDIFREIININGIGPQLALALQTELRGPRLIEAIINGDLVTLTKAHGI 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+ TEL+ + ++L    +  +      Q  + +      +  + L  LGY + +
Sbjct: 121 GRRTAERLSTELRSRFVNLYHTNEVYLKQEGSIQG-VLNDSDLVHDIQNTLKTLGYNKLE 179

Query: 177 ATTAVVSVLKKEK--NIADDSQIIRLALRAIS 206
              A+  +  K      +D    +R AL  +S
Sbjct: 180 IQRAINKLKSKSSLVENSDFDVWLREALHWLS 211


>gi|225164626|ref|ZP_03726870.1| Holliday junction resolvasome DNA-binding subunit-like protein
           [Opitutaceae bacterium TAV2]
 gi|224800771|gb|EEG19123.1| Holliday junction resolvasome DNA-binding subunit-like protein
           [Opitutaceae bacterium TAV2]
          Length = 219

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +        ++++ G  Y +  P+ T   L  +G    L      R+D   L
Sbjct: 1   MITSIQGLLTEATPLRAVVEINGFGYEVNIPVTTAEKLPAVGAKVKLHTIVIYREDAQTL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S  +R +F L+   V GVG ++A+ ++SR++   L  +I   +   +++ PGI  K
Sbjct: 61  YGFASPEERDFFRLMIEQVSGVGPKLALTIMSRMSLPVLEGAIRAGDISSLSKCPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152
            A R++ EL+ K  +  +               
Sbjct: 121 TAERLVVELRAKVGASPAGGDAGSPVAGDGGTS 153


>gi|75909032|ref|YP_323328.1| Holliday junction DNA helicase RuvA [Anabaena variabilis ATCC
           29413]
 gi|123758778|sp|Q3M9A3|RUVA_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|75702757|gb|ABA22433.1| Holliday junction DNA helicase subunit RuvA [Anabaena variabilis
           ATCC 29413]
          Length = 213

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIEGL---YEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+     + V++  +V G+ Y +  P R    L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV GVGA  A+ +L  +   +LV++II  N +++ Q PG
Sbjct: 61  EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  KIA RI  ELK K I         ++            P         L  LGY   
Sbjct: 121 VGKKIADRICLELKAKLIEWRKSAGFFVATEGP-------APGILEEVQMTLFALGYTAH 173

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207
           + + A+  V +       A     I+ A+  +S 
Sbjct: 174 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLSS 207


>gi|319937623|ref|ZP_08012027.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp.
           29_1]
 gi|319807265|gb|EFW03877.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp.
           29_1]
          Length = 188

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  D++++D QG+ Y+IY            G    ++V   +++D I L
Sbjct: 1   MYSYIKGIIVDMARDHIVVDNQGIGYLIYVSNPYQFT---KGKETLVYVYQQVKEDGILL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  ++  F+ L  V+G+G + A+G+L+      ++++I  +N   + +IPGI  K 
Sbjct: 58  FGFLSKEEKDLFLKLIMVKGIGCKTAIGILATGDVNAIIQAIESKNIVYLKKIPGIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK               N   + +         AI  L+ LGY + +    
Sbjct: 118 AQQIILDLQGKF--------------NGVISEMILTSVEFDEAIEVLIALGYKRQEVDKV 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ ++     D +  ++ AL  +
Sbjct: 164 MNTLSQEH---LDTNGYVKKALNLL 185


>gi|17227871|ref|NP_484419.1| Holliday junction DNA helicase RuvA [Nostoc sp. PCC 7120]
 gi|20455248|sp|Q8YZT2|RUVA_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17129720|dbj|BAB72333.1| holliday junction DNA helicase [Nostoc sp. PCC 7120]
          Length = 213

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIEGL---YEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+     + V++  +V G+ Y +  P R    L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV GVGA  A+ +L  +   +LV++II  N +++ Q PG
Sbjct: 61  EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  KIA R+  ELK K I         ++            P         L  LGY   
Sbjct: 121 VGKKIAERVCLELKAKLIEWRKSAGFFVATEGP-------APGILEEVQMTLFALGYTAH 173

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207
           + + A+  V +       A     I+ A+  +S 
Sbjct: 174 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLSS 207


>gi|190571380|ref|YP_001975738.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018779|ref|ZP_03334587.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|254767401|sp|B3CMH6|RUVA_WOLPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190357652|emb|CAQ55096.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995730|gb|EEB56370.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 190

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 116/207 (56%), Gaps = 19/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQI 58
           MIG ++G ++ +  D+++++V  V YI+Y   +TLS    IG    L ++T+   R++  
Sbjct: 1   MIGNLRGIVDEVCSDHIILNVNDVGYIVYLSAKTLSA-CSIGSRVKLLIDTYANSRENVT 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF+S  ++Q   LL  V GV  + AM +LS++T  +L  +II ++   + ++ G+ +
Sbjct: 60  QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIINEDKLAL-KVSGLGL 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L              + +     S + +A+SAL+NLGY + +A 
Sbjct: 119 KLINRIITELNGKVSKL--------------EINNNHFHSISEDALSALINLGYERTKAY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             +  +  +  N+ D   IIR+AL+ I
Sbjct: 165 DTIKKIEDESPNL-DTKDIIRMALKTI 190


>gi|257469281|ref|ZP_05633375.1| Holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC
           49185]
 gi|317063528|ref|ZP_07928013.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC
           49185]
 gi|313689204|gb|EFS26039.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC
           49185]
          Length = 198

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +E    DY+ +DV GV Y +   +RT   +   G+   L++  ++++D  +L
Sbjct: 1   MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFISA-GEEVKLYIYNYIKEDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R  F +L  V+G+G  +A+ V+S      + + +   +   + ++P +  K 
Sbjct: 60  IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYTNLKRVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + +++ +LK K  +L      D   ++                ISAL  LGY + +  T 
Sbjct: 120 SQQLILDLKSKLKTL------DALSIDTRNDDAAKHLMIEEELISALEGLGYSKKEINTL 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +     + ++     + I+  L+ ++
Sbjct: 174 ITR--DELRSFKTIEEAIKGVLKKVN 197


>gi|260890744|ref|ZP_05902007.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254]
 gi|260859622|gb|EEX74122.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254]
          Length = 211

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 8/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     DYV +D+ G+ Y +Y  ++T   L  IG+   L+V T++++D I L
Sbjct: 1   MFEYISGKLTIKKIDYVALDINGLAYKVYVSLKTFEKLDNIGNDEKLYVYTNVKEDDISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L S+ GVG ++ + +LS     E+++ +    SK+  ++PG+ +K 
Sbjct: 61  YGFKTQNERELFKALISISGVGPKLGIAILSTFNTREIIDIVNENESKIFTRVPGLGIKK 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174
           A +I+ +LK K   L      +          I S  S         +   AL +LGY  
Sbjct: 121 AQKIILDLKDKVKKLDLTETIEEISDISSGKLITSNTSNPKLLLMKEDLKLALESLGYIN 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +  +    K+   + D S+ I++ L+ I
Sbjct: 181 SDVSKWITD--KELAQVKDISEAIKIILQKI 209


>gi|119509314|ref|ZP_01628464.1| Holliday junction DNA helicase motor protein [Nodularia spumigena
           CCY9414]
 gi|119466156|gb|EAW47043.1| Holliday junction DNA helicase motor protein [Nodularia spumigena
           CCY9414]
          Length = 213

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIEGL-----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+         + ++V  + Y +  P R    L + G    +F    +R 
Sbjct: 1   MISYLKGIVAGIQTIGGGRMMLTLEVNNLGYDLQVPQRLAKQLPESGGVTQIFTHLQIRD 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+G   A+ +L  +   +LV++II  N++++ Q PG
Sbjct: 61  EVPFLYGFASPAERDLFRQLLSVSGIGTACAIALLDTLEVPDLVQAIIAANTQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K +         ++            P         L  LGY  D
Sbjct: 121 VGKKTAERICLELKTKLVEWRKSAGFFVATGGP-------APGILEEVQMTLFALGYTAD 173

Query: 176 QATTAVVSVLKKEKNIAD--DSQIIRLALRAISC 207
           + + A+  V +      D      I+ A+  +S 
Sbjct: 174 EVSHALHVVSEDIGLTKDAYVEDWIKQAIAHLSS 207


>gi|87304141|ref|ZP_01086682.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701]
 gi|87281448|gb|EAQ73513.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701]
          Length = 197

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 8/200 (4%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       VL+   GV Y +    R    L +     TL++    R+D
Sbjct: 1   MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F LL  V GVG +  + +L      ELV +I   + K + Q  GI
Sbjct: 60  GSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGGDLKRLCQAQGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  +L+    +   +  Q       E      +P    +  + L++LGY + +
Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLDPQPSLV---EGLASEQIPEAGEDVEATLISLGYDELE 176

Query: 177 ATTAVVSVLKKEKNIADDSQ 196
              A+ ++      +     
Sbjct: 177 IRRAIRAIADGASGVPPSGT 196


>gi|296127494|ref|YP_003634746.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM
           12563]
 gi|296019310|gb|ADG72547.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM
           12563]
          Length = 194

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 102/207 (49%), Gaps = 14/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+GN++ + E  + +   GV Y I    +      K  D   L+ +   ++D + L
Sbjct: 1   MFAFIEGNVQIISEGVIALVCNGVGYEIIVSKKLE---VKNDDKIRLYTQLIHKEDAMIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +++ F  L +  GVG ++AM +LS  +  +L+  +  ++  ++ ++ G+ +K 
Sbjct: 58  YGFLTREEKKMFSTLIAASGVGPKLAMEILSTYSINDLMHILFNKDINLLKKVQGMGLKK 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ EL+ K   +          +N   + + +      + I AL++LG+  ++A  A
Sbjct: 118 AEKLLFELRDKIEKID---------INISSSSVQNYNDNESDVIKALISLGFSNNEAVKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + S+  + K+      +I  ALR +S 
Sbjct: 169 LSSI--ENKDNMSAEDLISNALRNLSS 193


>gi|331668556|ref|ZP_08369404.1| holliday junction DNA helicase RuvA [Escherichia coli TA271]
 gi|331063750|gb|EGI35661.1| holliday junction DNA helicase RuvA [Escherichia coli TA271]
 gi|332756762|gb|EGJ87109.1| holliday junction DNA helicase RuvA [Shigella flexneri 4343-70]
          Length = 123

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119


>gi|167755866|ref|ZP_02427993.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402]
 gi|237734834|ref|ZP_04565315.1| holliday junction DNA helicase subunit RuvA [Mollicutes bacterium
           D7]
 gi|167704805|gb|EDS19384.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402]
 gi|229382162|gb|EEO32253.1| holliday junction DNA helicase subunit RuvA [Coprobacillus sp. D7]
          Length = 188

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +  D+++++  G+ Y+IY            G    +F+   +++D + L
Sbjct: 1   MYSYLIGTVVEMNIDHIVVENSGIGYLIYVNNPYEYT---RGKEIKIFLYQQVKEDALLL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F+ L  V+G+G + A+G+L+    T ++ +I   N   + +IPGI  K 
Sbjct: 58  YGFKTSEEKEMFLKLILVKGIGCKTAIGILATGDVTSIISAIETGNVAYLKKIPGIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK               N   A      +    A   L+ LGY + +   A
Sbjct: 118 AQQIILDLQGKFK-------------NTPTATTLINNNDLDEAAEVLIALGYKKSEVDKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +L ++    D +  ++ AL  +
Sbjct: 165 LAVLLNEK---LDTNGYVKRALSLL 186


>gi|327398312|ref|YP_004339181.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima
           DSM 10411]
 gi|327180941|gb|AEA33122.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima
           DSM 10411]
          Length = 189

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +        +IDV G+   I  P+ T + L +IG+ CTL  E  + +  ++L
Sbjct: 1   MLEAVRGTLVDKTNLKAVIDVNGLMLDISIPLSTFNKLPEIGEECTLLCELVIGEKSLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L+ +  +GA+ A+ +LS I+  +   +I  QN +++ +IPGI  K 
Sbjct: 61  YGFSTKEEKNLFNSLRKISKIGAQTAISILSNISIEQFYRAIEEQNKELLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ E   K                         P    +AI+ L  LG+ Q  A+  
Sbjct: 121 AISIIVEFSSKIPK-------------------TDNPPIVDDAITTLQGLGFSQSDASKI 161

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + + + NI     +I+ +L+ I
Sbjct: 162 VNEIYRNKPNIT-IEDLIKESLKNI 185


>gi|126733600|ref|ZP_01749347.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp.
           CCS2]
 gi|126716466|gb|EBA13330.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp.
           CCS2]
          Length = 219

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 12/217 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV YI+Y   R ++ L   G+   LF +  +R+D ++L
Sbjct: 1   MIGKIAGRLEYRSTDHVLIDVRGVGYIVYVSERVMAGLTSNGEAVALFTDLLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ +M +L  + A  +  +I L +   +A+  G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASMAILGTLGAEGVSRAIALGDWNAVAKAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-----------N 169
           A R+  ELK KA  + ++                        A                N
Sbjct: 121 AQRVTIELKDKAPGVMAMGGAVAEAQGDAVIEAEPTAPVQRAAAPKANAASAEALSALGN 180

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           LGY       + V+        AD S +IR AL+ ++
Sbjct: 181 LGYAPG-EAASAVAEAAGAAPDADTSALIRAALKLLA 216


>gi|157736995|ref|YP_001489678.1| Holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018]
 gi|167012656|sp|A8EST5|RUVA_ARCB4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157698849|gb|ABV67009.1| holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018]
          Length = 185

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 22/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I       + ++V GV Y ++  +   S +  + D   L +   +R+D   L
Sbjct: 1   MIVGLIGKIIKKEPTQLNVNVNGVIYEVFVSLNCSSKI--VSDDVKLEITHIIREDAQSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +++ F  +  + GVG +VA+ + S  T T   + +   +  ++ ++PGI  K 
Sbjct: 59  YGFLDSNEKKLFDTVIKINGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKG 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL G  I               +     S  S A+ A  AL +LG+ +D     
Sbjct: 119 ASRILVELSGFII---------------DSNDETSGSSSALEAALALESLGFKKD----L 159

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V SVLK   N ++ S +++ AL+ +
Sbjct: 160 VSSVLKTCVN-SNTSDLVKEALKKL 183


>gi|323165015|gb|EFZ50805.1| holliday junction DNA helicase RuvA [Shigella sonnei 53G]
          Length = 123

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119


>gi|224436530|ref|ZP_03657539.1| Holliday junction DNA helicase RuvA [Helicobacter cinaedi CCUG
           18818]
 gi|313143033|ref|ZP_07805226.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           cinaedi CCUG 18818]
 gi|313128064|gb|EFR45681.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           cinaedi CCUG 18818]
          Length = 195

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G I       + IDV GV Y +   +   S L G+ G    +     +R+D   
Sbjct: 1   MIVGLRGVIIRSEPMMIDIDVGGVIYGVQMSLNATSKLRGEGGKEVKIICTQIIREDSHL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+ ++++Q F  L  + GVG +VA+ +LS  T  E  + I  ++   + ++PGI  K
Sbjct: 61  LFGFVEEIEKQTFERLIKINGVGPKVALAILSTYTPMEFAKIISNKDVDALKKVPGIGAK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +IM ++ G    L       +S  +     +    S    A+ AL +LG+    A  
Sbjct: 121 GAGKIMVDVAGFFAGL-------ISDTSLADGKLSQENSLKNEALLALQSLGFKNTDAQK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  +  +       S++++LAL+ ++
Sbjct: 174 ALQGIEAQ-----SVSELVKLALKKLA 195


>gi|302344655|ref|YP_003809184.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM
           2075]
 gi|301641268|gb|ADK86590.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM
           2075]
          Length = 193

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     D+V++DV GV Y ++  +     L + G+  +L   T +R D I L
Sbjct: 1   MIARLRGQLAARRPDHVVVDVGGVGYRVFVSLGAFCRLPQSGE-ISLLTHTIVRDDAIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ + + F LL SV GVG ++A+ +LS +   EL  +I   ++  +A+ PG+  K 
Sbjct: 60  YGFINEQEWEAFRLLVSVAGVGPKLALAILSGLEVGELWAAIRAGDAARLAKTPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L G+              V ++ A   +  + A +A SAL NLGY + +A  A
Sbjct: 120 AGRLVVDLAGRLP------------VGEQPAAAVAPGTAADDAQSALCNLGYPEAKAKKA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L    + A    ++RLAL+ ++
Sbjct: 168 VDKALAVAGDGAALEDLLRLALKELA 193


>gi|57239403|ref|YP_180539.1| Holliday junction DNA helicase RuvA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579373|ref|YP_197585.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|81352832|sp|Q5HAK5|RUVA_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57161482|emb|CAH58408.1| putative Holliday junction DNA helicase RuvA [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417999|emb|CAI27203.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 191

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 118/207 (57%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR- 59
           MIG I GN+E + + Y++++V  + YIIY   + L    K+GD   L++ET++ +D I  
Sbjct: 1   MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQT-CKVGDNIKLYIETYVNRDNITQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  ++ +  +L ++ G+  + A+ +LS+++  ++  +++  + K+  +  GI  K
Sbjct: 60  LYGFLNRQEQDYLKMLVTINGINYKTALSILSKLSPEQIFSAVVNND-KIAFKGNGIGEK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TEL+ K   +   +++  S +  +            ++++AL++LGY + +A  
Sbjct: 119 LAGRIITELQYKINKMP--IEETFSIIEND------------DSLAALISLGYEKLKAFN 164

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +  K  + A   ++IR AL+ +S
Sbjct: 165 VIQEIKSKTPD-ASTQEVIRKALQKLS 190


>gi|319956495|ref|YP_004167758.1| holliday junction DNA helicase subunit ruva [Nitratifractor
           salsuginis DSM 16511]
 gi|319418899|gb|ADV46009.1| Holliday junction DNA helicase subunit RuvA [Nitratifractor
           salsuginis DSM 16511]
          Length = 187

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E     ++ ++V G+ Y +   + T S      +   L+V   +R+D   L
Sbjct: 1   MIVGIEGKVEAREPTWLHLNVGGLIYEVNVSLNT-SNTVAGKEQVKLYVTQIIREDANLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L  + GVG +VA  V S  T     + +  ++  ++ ++PGI  K 
Sbjct: 60  FGFADRNEKKMFDTLLKINGVGPKVAQAVCSTFTPESFAKIVAAKDVALLKRVPGIGPKA 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL    +                     S  +    A+ AL +LG+ ++    A
Sbjct: 120 ASRILVELADFIV--------------DGSTAEGSAAADHQEAVMALESLGFKKEAIRKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +           D + +++ AL+ +
Sbjct: 166 LA------GESGDTATLVKAALKKL 184


>gi|315636187|ref|ZP_07891441.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter
           butzleri JV22]
 gi|315479548|gb|EFU70227.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter
           butzleri JV22]
          Length = 185

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 22/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I       + ++V GV Y ++  +   S +  + D   L +   +R+D   L
Sbjct: 1   MIVGLIGKIIKKEPTQLNVNVNGVIYEVFVSLNCSSKI--VSDDVKLEITHIIREDAQSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +++ F  +  + GVG +VA+ + S  T T   + +   +  ++ ++PGI  K 
Sbjct: 59  YGFLDSNEKKLFDTVIKINGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKG 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL G  I               +     S  S A+ A  AL +LG+ +D     
Sbjct: 119 ASRILVELSGFII---------------DSNDETSGSSSALEAALALESLGFKKD----L 159

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V SVLK   + ++ S +++ AL+ +
Sbjct: 160 VSSVLKTCVS-SNTSDLVKEALKKL 183


>gi|167745589|ref|ZP_02417716.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662]
 gi|167654901|gb|EDR99030.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662]
          Length = 187

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 8/193 (4%)

Query: 13  YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72
                +++  G+ Y I  P       G IG    ++   H+R+D I LFGF +  + + F
Sbjct: 2   TPGGAVVENNGIGYDIMMPAG-QEFPGGIGQEVRIYTHMHVREDDISLFGFRTKEELEAF 60

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            LL  V G+G +V + VLS ++  EL  +++  +SK I++ PG+  K A +++ EL+ K 
Sbjct: 61  ELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKGAKKLILELRDKL 120

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
                   + M       A      +        LV+LGY + +A  A+  V  +     
Sbjct: 121 DFEEFEQAEPMDFAGDLPAEDSVAVTA-----QGLVSLGYSRSEAMMAIKKV--ENAAEY 173

Query: 193 DDSQIIRLALRAI 205
              Q+++ AL  +
Sbjct: 174 SPEQLLKKALTKL 186


>gi|16330186|ref|NP_440914.1| Holliday junction DNA helicase RuvA [Synechocystis sp. PCC 6803]
 gi|3122847|sp|P73554|RUVA_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|1652674|dbj|BAA17594.1| Holliday junction DNA helicase; RuvA [Synechocystis sp. PCC 6803]
          Length = 211

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSC-LGKIGDFCTLFVETHMR 54
           MI  ++G +  + ++     ++++ V GV Y +  P            +   +F    +R
Sbjct: 1   MIQFLQGQVVTVTKNIQNRWFLILSVNGVGYELQVPHSLAQQWTPPPPEPQQVFTHLLVR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           QDQI LFGF    +R  F  L  V G+GA++A+ ++  +    LV++++  N K + Q P
Sbjct: 61  QDQIALFGFGRLAERDLFGQLMGVTGIGAQLAIALIETLGLEGLVQAVVTGNVKQLCQTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A R+  ELK K           +     E        +   +    L+ LGY Q
Sbjct: 121 GVGKKGAERLALELKTKLSQWHK-----LQMGTGETDSTLPTTALLEDLEMTLLALGYTQ 175

Query: 175 DQATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206
            +   A+  V  +       D    IR A+  +S
Sbjct: 176 TEIQQAIAMVSQVPDVAQSEDPEVWIRQAIGWLS 209


>gi|159027980|emb|CAO87940.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 209

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 15/214 (7%)

Query: 1   MIGKIKGNIEG--LYEDY---VLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54
           MI  ++G         +    +++DV  + Y I  P R    +GK   D   +F    +R
Sbjct: 1   MINYLRGQAIEVIKTPNNRLILILDVNQIGYEIQIPSRLALDIGKDNNDSRQIFTHLLLR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +  +R  F  L SV GVGA++A+ ++  +   ELV +I+  N+K++++ P
Sbjct: 61  EDQPLLYGFGTAPERDLFRQLLSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+ +K A RI  ELK K  +   + +   +        I        +    L+ LGY Q
Sbjct: 121 GVGLKTAERIALELKTKLAAWRQLKEATTTTTA-----ILPAAEILEDVQMTLLALGYSQ 175

Query: 175 DQATTAVVSVLKKEK---NIADDSQIIRLALRAI 205
           ++   A+ +VL ++            I+ A+  +
Sbjct: 176 EEIDRAI-AVLSQDALFSKNTQPEDWIKGAINWL 208


>gi|323342039|ref|ZP_08082272.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464464|gb|EFY09657.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 195

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 21/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G       DYV++D  G+ Y ++C    +  L    +        H+R+D I L
Sbjct: 1   MIAFISGVAVDRGIDYVVVDNHGIGYQVFCGNPEMVTL---NESIIFHTYQHVREDAIIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +   F  L +V+GVG +  + +LSR +  ++V +I  ++   + ++PG+  K+
Sbjct: 58  FGFVEKRELDIFRQLITVKGVGPKTGITILSRFSGDDIVRAIDQEDMAFLKKLPGVGPKM 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS++M +LKGK I+       D     K+   +         A+ AL +LG+ + +    
Sbjct: 118 ASQMMLDLKGKFIA------SDTPSTTKKALPL------VDEALDALGDLGFKKVE---- 161

Query: 181 VVSVLKKEK--NIADDSQIIRLALRAI 205
           + ++  +    N+     +I+  L+ +
Sbjct: 162 LNNIKHELSLLNLDSVDDMIKEGLKLL 188


>gi|225619866|ref|YP_002721123.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae
           WA1]
 gi|225214685|gb|ACN83419.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae
           WA1]
          Length = 192

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 99/207 (47%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G ++ + E  + +   GV Y I    +      K  D   L+ +   R+D + L
Sbjct: 1   MFAFIEGKVQIISEGVIALLCNGVGYEIIVSKK---LDVKNDDNIRLYTKLIHREDAMIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L S  GVG ++AM VLS  +  +L+  +  ++  ++ ++ G+ +K 
Sbjct: 58  YGFLTREEKNMFTTLMSASGVGPKLAMEVLSTYSINDLMHILFNKDINLLKKVSGMGVKK 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ EL+ K   +   +   +   + E            + I AL++LG+  ++A  A
Sbjct: 118 AEKLLFELRDKIEKIDINISPSVISNDNE-----------SDVIKALISLGFSNNEAVKA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           + ++  + K+      +I  ALR +S 
Sbjct: 167 LSAI--ENKDNMTTEDLISNALRNLST 191


>gi|320537837|ref|ZP_08037755.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421]
 gi|320145314|gb|EFW37012.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421]
          Length = 203

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     + + I+  G+ + +    ++L   G +G    +F   + R+DQ+RL
Sbjct: 1   MFNSINGVLTEKSSESICIETHGIEWSVAVSAKSLDSFGMVGATVRVFTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V G+G + A+ +LS ITA  L  ++   +  ++  IPG+  K 
Sbjct: 61  FGFPTREERALFLDLIKVDGIGPKQALRILSGITAENLETALEEGDVHLLQTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG+  ++  + +                 S   + I ALV +GY +  AT  
Sbjct: 121 AQKMVLALKGQLSNIHEIGKS-----------ASIPQSEFEDIIQALVQMGYDRKAATEQ 169

Query: 181 VVSVL-----KKEKNIADDSQIIRLALRAISC 207
           V +       K      +++++ R A+ A+S 
Sbjct: 170 VEAAASALRSKGANPQENENELFRSAIVALST 201


>gi|169350138|ref|ZP_02867076.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552]
 gi|169292921|gb|EDS75054.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552]
          Length = 186

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  +  D+++++  G+ Y+IY            G    +++  ++++D + L
Sbjct: 1   MYSYIIGKIVEINVDHIVVENNGIGYLIYVSNPYEFT---KGKEIKVYLYQYVKEDVLLL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F+ L  V+G+G + A+G+L+      ++ +I   +   + +IPGI  K 
Sbjct: 58  YGFKTIEEKEMFLKLILVKGIGCKTAIGILATGDLERIISAIETNDVNYLKKIPGIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK   +   ++                      A+  L+ LGY + +   A
Sbjct: 118 AKQIILDLQGKFNDVPITIK---------------TNDDLQEALEVLIALGYRKVEVEKA 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VL  E    D +  ++ AL  +
Sbjct: 163 L-KVLADEN--LDTNGYVKRALSLL 184


>gi|242310193|ref|ZP_04809348.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pullorum MIT 98-5489]
 gi|239523490|gb|EEQ63356.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pullorum MIT 98-5489]
          Length = 192

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           MI  ++G I       + I   GV Y ++  ++T + + +  G+  TL     +R+D   
Sbjct: 1   MIIALQGEIFFKEPTRIAIKCAGVIYEVFISLQTSNQITQTKGENLTLLTTHIIREDAQI 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL + +++ F  L  + GVG +VAM +LS  T     + +   + K + ++PGI  K
Sbjct: 61  LFGFLENNEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL G ++ LS            +        S     + AL +LGY  D    
Sbjct: 121 SAGRILVELSGWSLELS------------QTNQTIKEDSTLHQVVLALESLGYKNDIIQK 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + K E       Q+++ AL+ I
Sbjct: 169 AIKGLEKDE-----VGQMVKAALKKI 189


>gi|116333841|ref|YP_795368.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           brevis ATCC 367]
 gi|122269472|sp|Q03R35|RUVA_LACBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116099188|gb|ABJ64337.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus brevis
           ATCC 367]
          Length = 202

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +Y D+V++DV GV Y++         +       T++V   +      L
Sbjct: 1   MYEYLHGLITAVYPDHVVVDVNGVGYLVNTANPYRYEVSAT--AVTIYVYQAVSDTAQTL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L +V G+G + A+ +L+      L+ +I   ++  + + PG+  K 
Sbjct: 59  YGFSDFAEKQLFLKLINVNGIGPKSALAILANPDHQGLMMAIKTNDTGFLTKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+ K   L+     D +    E A   +      +A++AL  LGY +  A   
Sbjct: 119 AGQIVLDLQNKLDDLAPAT-DDNTLFTPEVAPTTTENPQLADALAALTALGYRET-AVKK 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + L++  N    +  +   LR +
Sbjct: 177 ITAQLRQF-NGQTTNDYLSEGLRLL 200


>gi|28378879|ref|NP_785771.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1]
 gi|254557084|ref|YP_003063501.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1]
 gi|308181078|ref|YP_003925206.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38258511|sp|Q88V02|RUVA_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28271716|emb|CAD64622.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1]
 gi|254046011|gb|ACT62804.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1]
 gi|308046569|gb|ADN99112.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 203

 Score =  180 bits (459), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 84/206 (40%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M     G +  +   YV+I+V G+ Y +         +G       +++   + ++ + L
Sbjct: 1   MYEYFLGQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPT--AVKMYIHQAVSENGMSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  F  L  V G+G + A+ +L+      L+++I  +N+  +   PG+  K 
Sbjct: 59  FGFFDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+  V    +      A   ++        +     GY +      
Sbjct: 119 AQQIVLDLKGKLNDLNVDVTGQTALDVDAPAVDGALADALAALEAL----GYSKADVKKV 174

Query: 181 VVSVLK-KEKNIADDSQIIRLALRAI 205
              +    +   AD + ++   LR +
Sbjct: 175 TKKLETFSQTQGADTNTLLSEGLRLL 200


>gi|222099496|ref|YP_002534064.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|61657322|emb|CAI44241.1| holliday junction DNA helicase [Thermotoga neapolitana]
 gi|221571886|gb|ACM22698.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 191

 Score =  180 bits (459), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 22/206 (10%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           I  I G +     + V +    G+ + I C  +T   L +    C L+    + QD + L
Sbjct: 5   IAGIYGKVVEKNGNTVFVSTNSGIVFEIACDTQTCEEL-EENRECYLYTFLSVSQDGVAL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     +  F+ L  V  +G + A+ +LS      L+  I  Q+ + +++IPGIS K 
Sbjct: 64  YGFSDRKKKDLFLSLMKVSRLGPKTALKILSSEDVDTLISMINSQDVEGLSKIPGISRKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK                  ++ +         ++ ALV+LGY + QA  A
Sbjct: 124 AERIVMELKGKF-----------------ESTVLKDLKTYHESLEALVSLGYPEKQARKA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  VLK   +    S++I+ ALR +S
Sbjct: 167 IKEVLK---DGMSTSEVIKEALRILS 189


>gi|42527369|ref|NP_972467.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC
           35405]
 gi|81411982|sp|Q73LJ9|RUVA_TREDE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|41817954|gb|AAS12378.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC
           35405]
          Length = 201

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 105/211 (49%), Gaps = 15/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G + G   D V ++  G+ + I+     L  LG +G    ++   + R+DQ+RL
Sbjct: 1   MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V+GVG R A+ ++S + ++ L +++   +   + + PG+  K 
Sbjct: 61  FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNSSSLEKALEEGDLDTLQKAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKGK  +L+ V  +  + V+ E            + ++AL  +G+ +      
Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCE----------YEDIVTALTEMGFERKSVIVQ 170

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAIS 206
           V  + ++ K      + ++ ++ R ++ A+S
Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201


>gi|149923021|ref|ZP_01911439.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica
           SIR-1]
 gi|149816142|gb|EDM75652.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica
           SIR-1]
          Length = 206

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 4/193 (2%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++DV+GV Y ++  I+TL+ +   GD   L+V T++R+D I LFGF    +R  F +L 
Sbjct: 11  VILDVKGVGYELFVSIQTLAGVPAEGDEVELWVHTNVREDAITLFGFAEAEERLLFRMLT 70

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           SV  VG R A+ VL    A EL+E+I  ++S  + +IPGI  K + +I+  L  K ++L 
Sbjct: 71  SVPKVGPRNAVAVLGGFPAIELLETIAAKDSAKLVKIPGIGKKTSEQIVLTLGDKVVTLL 130

Query: 137 SVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
            +++         QA       P F   A   L++LG+       A+V+V  +    A+ 
Sbjct: 131 ELLRAQRGGEPGTQAELLPAEAPDFGTEAREVLLSLGWKGRAVEKALVAVEAELAEGANV 190

Query: 195 --SQIIRLALRAI 205
               ++R+ L  +
Sbjct: 191 QLDALVRMTLAKL 203


>gi|224418856|ref|ZP_03656862.1| Holliday junction DNA helicase RuvA [Helicobacter canadensis MIT
           98-5491]
 gi|253828156|ref|ZP_04871041.1| Holliday junction DNA helicase motor protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313142373|ref|ZP_07804566.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           canadensis MIT 98-5491]
 gi|253511562|gb|EES90221.1| Holliday junction DNA helicase motor protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313131404|gb|EFR49021.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           canadensis MIT 98-5491]
          Length = 191

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           MI  ++G I       + I+  GV Y ++  ++T + + +  GD  TL     +R+D   
Sbjct: 1   MIIALEGKIFAKEPTKIAINCTGVVYEVFISLQTSNQITQNKGDSITLLTTHIIREDVQN 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL   +++ F  L  + GVG +VAM +LS  T     + +   + K + ++PGI  K
Sbjct: 61  LFGFLESSEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVEGNDIKSMQRVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL G ++ LS             Q       S     I AL +LGY  D    
Sbjct: 121 SAGRILVELSGWSLELS-------------QNETNHKDSDYNQVILALESLGYKNDIIQK 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + K E       Q+++ AL+ I
Sbjct: 168 AIKGLEKNE-----VGQMVKAALKKI 188


>gi|46199998|ref|YP_005665.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27]
 gi|55980260|ref|YP_143557.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8]
 gi|20455264|sp|Q9F1Q3|RUVA_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81405352|sp|Q72GZ9|RUVA_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24987359|pdb|1IXR|A Chain A, Ruva-Ruvb Complex
 gi|24987360|pdb|1IXR|B Chain B, Ruva-Ruvb Complex
 gi|11559438|dbj|BAB18786.1| Holliday junction binding protein [Thermus thermophilus]
 gi|46197625|gb|AAS82038.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27]
 gi|55771673|dbj|BAD70114.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8]
          Length = 191

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +        ++   GV + +  P   L  L + G    +     ++++ + L
Sbjct: 1   MIRYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQAL-EEGKEVGVHTHLLLKEEGLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +   F LL SV GVG +VA+ +LS +    L  +++  +++++    G+  ++
Sbjct: 60  YGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELKGK                   A        A  A+ AL  LG+ + QA   
Sbjct: 120 AERIALELKGKVPPHLL-------------AGEKVESEAAEEAVMALAALGFKEAQARAV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L +    A    +I+ AL+ +
Sbjct: 167 VLDLLAQNPK-ARAQDLIKEALKRL 190


>gi|168333338|ref|ZP_02691622.1| Holliday junction DNA helicase RuvA [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 183

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIR 59
           MIG + G +   +E+ +L++V G+ Y I+         GKI      +++  ++++D   
Sbjct: 1   MIGYLVGTVAERFENIILLEVNGIGYEIFM-------XGKIDVAEVKIYIYENIKEDAYD 53

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+S  +++ F  L SV G+G + A   L  +    LVE I+ +++  I ++PGI  K
Sbjct: 54  LYGFVSLAEKELFKKLISVNGIGPKAA-AALIVLHGINLVECIVNEDASEITRVPGIGAK 112

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           IASR++ ELK K  +  ++ ++              +      A +ALV LGY + QA  
Sbjct: 113 IASRLILELKDKLSAFKTLEKR-------------VVVDGLEEATAALVALGYNKKQAAR 159

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV +V     +I D    I+ AL  +
Sbjct: 160 AVNAVYNYSDSIEDT---IKKALAVL 182


>gi|309811443|ref|ZP_07705229.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185]
 gi|308434590|gb|EFP58436.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185]
          Length = 201

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 40  KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           + G+   L     +R+D + LFGF  D +R  F  +Q+V GVG R+A+ +L+     +L 
Sbjct: 39  RPGESMRLATSLVVREDSLTLFGFADDDERALFEQVQTVSGVGPRLALAMLAVHPPQQLA 98

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159
            +I   + + + ++PGI  K A RI+ EL+ K +S S    Q           +    + 
Sbjct: 99  TAIAGGDVRALTKVPGIGKKGAERIVLELRDKVVSASGDGGQAAPQA------VVPATAG 152

Query: 160 AINAISALVNLGYGQDQATTAVVSVLK-KEKNIADDSQIIRLALRAI 205
                 AL+ LG+   QA  AV  V    E   A+   ++RLALR +
Sbjct: 153 GDQVAEALIGLGWSAKQAEDAVAKVAARPEAEGANTPTVLRLALREL 199


>gi|169333981|ref|ZP_02861174.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258698|gb|EDS72664.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM
           17244]
          Length = 199

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   IKG++  + E Y+ I+   GV +++     T + L    +   ++    +R++ + 
Sbjct: 1   MFDYIKGDVTDIREGYLTIENKSGVGFLLNVSENTATDLINDREDVKVYTYMAVRENDVS 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +R+ F  L +V  +G ++A+ +LS ++   +V +I+ ++ K +    G+  K
Sbjct: 61  LFGFSTLFEREIFFKLLTVPKIGPKIALSILSALSPNMIVAAIMNKDYKSLCTANGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  L+ K   L  + +  ++ +N               AI  L +LG+ +  A  
Sbjct: 121 AAEQIVVTLQDKFGDLPEIEEITVNDMN-------INNDLKDEAILGLTSLGFDRAYAAK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            V  +     +      I+ LAL+ ++
Sbjct: 174 IVREI--SVDDDLTIEDILSLALQKVN 198


>gi|256852230|ref|ZP_05557616.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           27-2-CHN]
 gi|260661738|ref|ZP_05862649.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           115-3-CHN]
 gi|282932642|ref|ZP_06338056.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|297205604|ref|ZP_06923000.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           jensenii JV-V16]
 gi|256615276|gb|EEU20467.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           27-2-CHN]
 gi|260547485|gb|EEX23464.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           115-3-CHN]
 gi|281303216|gb|EFA95404.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|297150182|gb|EFH30479.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           jensenii JV-V16]
          Length = 193

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 16/200 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++ +DV G  + I+   +  S     G    ++VE  +R + I L
Sbjct: 1   MYEYLEGTVTIITPSFIALDVGGQGFKIF-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + AM +++  ++  L ++I       + + PG+  K 
Sbjct: 58  YGFESSDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S V+QD+   +  QA          +A+ AL  LGY + +    
Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166

Query: 181 VVSVLKKEKNIADDSQIIRL 200
              + K   + AD  + I+ 
Sbjct: 167 KPKLEKSSFDTAD--EYIKE 184


>gi|172036123|ref|YP_001802624.1| Holliday junction DNA helicase RuvA [Cyanothece sp. ATCC 51142]
 gi|226698729|sp|B1WUV7|RUVA_CYAA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171697577|gb|ACB50558.1| Holliday junction DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 212

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 99/214 (46%), Gaps = 13/214 (6%)

Query: 1   MIGKIKG---NIEGLYEDYV--LIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI  +KG    +     + V  +++V  + Y +  P +    + +   D   +F    ++
Sbjct: 1   MISYLKGSPIEVIKNTNNRVILVLEVNEIGYELQIPSKLGREISQEKLDTIQIFTHVQIK 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +  +R+ F  L SV G+GA+ A+ ++  +   ELV++I+  N ++++Q  
Sbjct: 61  EDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQPS 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI  K A RI  EL+ K      +V   ++      +          +    L+ LGY  
Sbjct: 121 GIGRKTAERIALELRTKLSQWRKMVGVTVTS-----SAAMPSLEILEDIEMTLLALGYTN 175

Query: 175 DQATTAVVSVLKKEKNI--ADDSQIIRLALRAIS 206
           ++   A+ ++ +    +   +  + I+ A+  +S
Sbjct: 176 EEINKAISTLSQDNLMLKNTNTEEWIKEAIAWLS 209


>gi|317488563|ref|ZP_07947108.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA]
 gi|316912305|gb|EFV33869.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA]
          Length = 197

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +         I+V GV Y +     +LS L + G    +     +R D + L
Sbjct: 1   MIAFLKGVLAAKTATTAFIEVNGVGYAVGMSQASLSKLPEAGAAVEVHTFLQVRDDGLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  ++  F  L  V GVG +VA+  LS  +   LV ++  Q+   + +IPG+  K 
Sbjct: 61  FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG          + ++ +  E A   +  +       AL+++G+  ++A  A
Sbjct: 121 ASRIILELKG-------SFDEGLAGLFDEAAPAVASAANLAGTREALLSMGFTSEEADVA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
               LK     A +S +++ AL+ +  
Sbjct: 174 ----LKGAPEGAAESVLLQYALKRLGT 196


>gi|163783946|ref|ZP_02178915.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880781|gb|EDP74316.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 180

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 29/206 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +  D+++I+       I  P +             ++     + +  RL
Sbjct: 1   MIDYIKGKVIEVLNDFIVIETGNFGIKIETPHKF------EKKDTKIYTYLTFKDESFRL 54

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     R+ F+ L S+ G+G + A  +L      +   ++      +++ +PGI  K 
Sbjct: 55  FGFKDRQTRELFIKLTSINGIGVKHAFSILKNFNYEDFTLAVENNRIDLLSSVPGIGKKT 114

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKGK                       S      +A+ ALV+LG+ +++    
Sbjct: 115 ASRIILELKGKL--------------------SFSEEPIFNDAVEALVSLGFEKEKVIKI 154

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  + +K  ++    ++I+L+L+ +S
Sbjct: 155 VKELSQKTNSL---EELIKLSLQKLS 177


>gi|325832047|ref|ZP_08165144.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1]
 gi|325486368|gb|EGC88820.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1]
          Length = 205

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G       I+V GV Y +     +LS L + G    +     +R D + L
Sbjct: 1   MIAFLKGTLAGKTATTAYIEVNGVGYAVGMSQASLSKLPEAGAPVEVHTFLQVRDDALAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L  V GVG +VA+  LS  +   LV ++  Q+   + +IPG+  K 
Sbjct: 61  YGFLALEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG          + ++ +    A   +  +       AL+++G+  ++A  A
Sbjct: 121 ASRIILELKG-------SFDEGLASLFDGAAPAAASAANLAGTREALLSMGFTSEEADVA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
               LK     A +  +++ AL+ +  
Sbjct: 174 ----LKGAPEGASEGVLLQYALKRLGS 196


>gi|166363769|ref|YP_001656042.1| Holliday junction DNA helicase RuvA [Microcystis aeruginosa
           NIES-843]
 gi|189045757|sp|B0JRV0|RUVA_MICAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166086142|dbj|BAG00850.1| holliday junction DNA helicase [Microcystis aeruginosa NIES-843]
          Length = 209

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 15/214 (7%)

Query: 1   MIGKIKGNIEG--LYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI  ++G         +    +++DV  + Y I  P R    +G    D C +F    +R
Sbjct: 1   MINYLRGQAIEVIKTPNNRLILILDVNQIGYEIQIPSRLALDIGNNNNDSCQIFTHLLLR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           ++Q  L+GF +  +R+ F  L SV GVGA++A+ ++  +   ELV +I+  N+K++++ P
Sbjct: 61  EEQPLLYGFGTAPERELFRQLLSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+ +K A RI  ELK K  +   + +   +        I    +   +    L+ LGY Q
Sbjct: 121 GVGLKTAERIALELKTKLAAWRQLREATTTITA-----ILPAAAILEDVQMTLLALGYSQ 175

Query: 175 DQATTAVVSVLKKEK---NIADDSQIIRLALRAI 205
           ++   A+ +VL ++            I+ A+  +
Sbjct: 176 EEIDRAM-AVLSQDALFSKNTQPEDWIKGAINWL 208


>gi|260893478|ref|YP_003239575.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
 gi|260865619|gb|ACX52725.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
          Length = 193

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G++        +I V G+   ++ P+     L   G    L+    +R+D+  +
Sbjct: 1   MLAFLRGSVLEKERGRAVILVGGMGLEVFLPLSLYERLPAKGGEVELYTCLLLREDRPEI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R +F+ L  + GVG + A+ +LS  +  EL E+I  ++ + +  +PG+  K 
Sbjct: 61  YGFGDREERDFFLRLLKIGGVGPKTALALLSCFSVEELREAIRSEDLEKLTVVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK          ++  + V  E A               L+NLGY + +A  A
Sbjct: 121 ARRLLLELK----------EEKGAPVEGEAAADAVAA---------LINLGYRRREAEEA 161

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V     K +      ++++L+L  +
Sbjct: 162 VREA--KARGAQGIEELLKLSLAYL 184


>gi|148242421|ref|YP_001227578.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. RCC307]
 gi|166231453|sp|A5GTL6|RUVA_SYNR3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147850731|emb|CAK28225.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. RCC307]
          Length = 208

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 12/211 (5%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG + G I   +++    ++L+    V Y +            +    T+      R+D
Sbjct: 1   MIGWLHGTIGDRWQEGNRCWLLLICGPVGYELQVSESLWRG-TALESPTTVHTHLQQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
             +L+GF +  DR  F LL SV GVG +VA+G++S + A  L++++  ++ KV+ Q PG+
Sbjct: 60  GQQLYGFETKADRNLFRLLISVNGVGPQVALGLISGLGAVSLLQAMAAEDVKVLCQAPGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  E + +        ++           +    + +    + L  LGYG ++
Sbjct: 120 GKRTAERLSLEWRSRLQ------ERWQQQGGSTPLRLVEPVAESRELRATLEALGYGPEE 173

Query: 177 ATTAVVSVLKKEKNIA-DDSQIIRLALRAIS 206
            + AV     +  +      + +R  L  +S
Sbjct: 174 VSAAVAQAGSQGLDPEQPMEEWLRHCLAWLS 204


>gi|68171608|ref|ZP_00544978.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658340|ref|YP_507141.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123763770|sp|Q2GHE2|RUVA_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67998975|gb|EAM85656.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599797|gb|ABD45266.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 190

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 107/207 (51%), Gaps = 19/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR- 59
           MIG + G IE +Y +Y++++V  V YIIY   + L    K G+   L++ET++ +D +  
Sbjct: 1   MIGSLTGIIEEIYNNYIILNVGNVGYIIYVSHKVLQS-CKTGNNIKLYIETYVNRDNLTQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   ++ +  +L ++ G+  + A+ +LS+++  ++  +++  N     +  GI  K
Sbjct: 60  LYGFLDKQEQDYMRMLVTINGINHKTAISILSKLSPEQIFSAVVSNNKNAF-RGNGIGEK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI TEL+ K   +       +                  ++++AL++LGY + +A  
Sbjct: 119 LAGRITTELQYKISKMPIEETLIIK---------------EDDSLAALISLGYDKLKAFN 163

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  +     +     +IIR AL+ +S
Sbjct: 164 AIQEIKANFPDD-SIQEIIRKALQKLS 189


>gi|58698305|ref|ZP_00373222.1| Holliday junction DNA helicase RuvA, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630965|ref|YP_002727756.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi]
 gi|254767402|sp|C0R4X3|RUVA_WOLWR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58535178|gb|EAL59260.1| Holliday junction DNA helicase RuvA, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592946|gb|ACN95965.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi]
          Length = 190

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 115/209 (55%), Gaps = 22/209 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MIG + G ++ +  D+++++V  V Y++Y   +TLS    IG    L +ET+   R++  
Sbjct: 1   MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLSA-CAIGSRIKLLIETYANNRENTT 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF+S+ ++Q   LL  V GV  + AM +LS++T  +L  +I+ ++   + ++ G+ +
Sbjct: 60  QLYGFISEEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKVTL-KMSGLGL 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L              + +  +      +A+SAL+NLGY + +A 
Sbjct: 119 KLINRIITELSGKVSKL--------------EINNNNFHPINEDALSALINLGYEKMKAY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207
             +    KK +   D   IIR+AL+ +S 
Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELST 189


>gi|61657364|emb|CAI44281.1| holliday junction DNA helicase [Thermotoga naphthophila RKU-10]
          Length = 191

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + K G+ C L    ++ QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK       S   +DM                   ++ ALV+LGY + QA  
Sbjct: 123 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALVSLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189


>gi|281412224|ref|YP_003346303.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila
           RKU-10]
 gi|281373327|gb|ADA66889.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila
           RKU-10]
          Length = 188

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + K G+ C L    ++ QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK       S   +DM                   ++ ALV+LGY + QA  
Sbjct: 120 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALVSLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186


>gi|224372976|ref|YP_002607348.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH]
 gi|254767379|sp|B9L9P0|RUVA_NAUPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|223589102|gb|ACM92838.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH]
          Length = 184

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 26/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++GNI       +L+DV  V Y +   + T S +   G     ++   +++++  L
Sbjct: 1   MIAALRGNIFEKDGGKILLDVNNVIYELNVSMITFSSVNDKG---LFYITEIIKENEYTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F  L  + GVG +VA+ + S  T    ++ I   +   + +IPGI  K 
Sbjct: 58  YGFADKNEKKLFDSLIKLNGVGPKVALAICSTYTPQTFMDIIANHDINALKKIPGIGPKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ E+                   + +            A+SAL +LG+ ++    A
Sbjct: 118 AKRILMEM------------------GEFEVVFEEQNPVFNQALSALESLGFNKNDIVKA 159

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +           + I+LAL+ +S
Sbjct: 160 LNGIKSDN-----LEETIKLALKKLS 180


>gi|313473093|ref|ZP_07813577.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153]
 gi|313448796|gb|EEQ67671.2| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153]
          Length = 195

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 16/200 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++ +DV G  + IY   +  S     G    ++VE  +R + I L
Sbjct: 1   MYEYLEGTVTIITPSFIALDVGGQGFKIY-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + AM +++  ++  L ++I       + + PG+  K 
Sbjct: 58  YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S V+QD+   +  QA          +A+ AL  LGY + +    
Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166

Query: 181 VVSVLKKEKNIADDSQIIRL 200
              + K   + AD  + I+ 
Sbjct: 167 KPKLEKSTYDTAD--EYIKE 184


>gi|257790728|ref|YP_003181334.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243]
 gi|257474625|gb|ACV54945.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243]
          Length = 197

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +         I+V G+ Y +      LS L + G    +     +R D + L
Sbjct: 1   MIAFLKGVLAAKTATTAYIEVNGIGYAVGMSQAGLSKLPEAGAAVEVHTFLQVRDDGLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  ++  F  L  V GVG +VA+  LS  +   LV ++  Q+   + +IPG+  K 
Sbjct: 61  FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG          + ++ +  E A + +  +       AL+++G+  ++A  A
Sbjct: 121 ASRIILELKG-------SFDEGLAGLFDEAAPVVASAANLAGTREALLSMGFTSEEADVA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
               LK     A +S +++ AL+ +  
Sbjct: 174 ----LKGAPEGAAESVLLQYALKRLGT 196


>gi|300787173|ref|YP_003767464.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei
           U32]
 gi|299796687|gb|ADJ47062.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei
           U32]
          Length = 198

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++V GV + +     TL+ L + G+   L     +R+D + L
Sbjct: 1   MISSVRGEVLIVGLDHVVVEVGGVGFAVQATPATLATL-RRGEEARLHTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     R+ F LLQ+V G+G R+A+  L+ +   +L  +++  N  V+  +PGI  K 
Sbjct: 60  FGFADADARELFGLLQTVSGIGPRLALATLAVLDPGKLRAALVEGNITVLTSVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  EL+ K  +L+            +   + +  +     + AL  LG+   QA  A
Sbjct: 120 AERLTLELRDKVTALAG---------TGDVPAVTAPGALRAEVVEALAGLGFPAKQAEQA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL  + +    + ++R AL  +
Sbjct: 171 VDKVLA-DGDGHTTAGVLRAALATL 194


>gi|325474386|gb|EGC77574.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           denticola F0402]
          Length = 201

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 104/211 (49%), Gaps = 15/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G + G   D V ++  G+ + I+     L  LG +G    ++   + R+DQ+RL
Sbjct: 1   MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V+GVG R A+ ++S +  + L +++   +   + + PG+  K 
Sbjct: 61  FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNFSSLEKALEEGDLDTLQKAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKGK  +L+ V  +  + V+ E            + ++AL  +G+ +      
Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCE----------YEDIVTALTEMGFERKSVIFQ 170

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAIS 206
           V  + ++ K      + ++ ++ R ++ A+S
Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201


>gi|170077885|ref|YP_001734523.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002]
 gi|229560135|sp|B1XL12|RUVA_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169885554|gb|ACA99267.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002]
          Length = 209

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 15/214 (7%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54
           M   +KG    ++ +     +++++V+ + Y I  P R    L   IG    +FV +  R
Sbjct: 1   MFSYLKGEAIAIHRNLQGRFFLILEVRDIGYEIQVPGRLAQELAAAIGQPQHIFVHSQQR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +D   L+GF S   R  F  L SV G+GA+ A+ +L  +T  ELV++I+  + + +A+ P
Sbjct: 61  EDGTYLYGFASAAARDLFRQLISVSGIGAQGAIALLDTLTLPELVQAIVTADHRQLAKAP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI  K A R+  EL+ K            +      A          +    L+ LGY +
Sbjct: 121 GIGKKTAERLALELRSKLSQWRDQFSLPDTAAQPNAA-------VHEDLELTLLALGYQE 173

Query: 175 DQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206
            +   A+ ++ +    + +D   + IR A+  +S
Sbjct: 174 TEIRGAIATLSQDSILLQNDNADEWIRRAITLLS 207


>gi|302527851|ref|ZP_07280193.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4]
 gi|302436746|gb|EFL08562.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4]
          Length = 198

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++V GV   +     TL+ L + G+   L     +R+D + L
Sbjct: 1   MISSVRGEVLSVGLDHVVVEVGGVGLAVQATPATLATL-RRGEQTRLHTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  +  R+ F LLQ+V G+G R+A+  L+ +   +L  +++  N  V+ Q+PGI  K 
Sbjct: 60  FGFAEEDARELFGLLQTVSGIGPRLALATLAVLEPDKLRAALVEGNITVLTQVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  EL+ K  +L             +   + +  +     + AL  LG+   QA  A
Sbjct: 120 AERLSLELRDKVTALGGA---------SDAPVVTAPGALRGEVVEALAGLGFPAKQAEQA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL  E +    S ++R AL A+
Sbjct: 171 VDKVL-SEGDGHTTSSVLRAALAAL 194


>gi|152966998|ref|YP_001362782.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans
           SRS30216]
 gi|151361515|gb|ABS04518.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans
           SRS30216]
          Length = 209

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 13/210 (6%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +  +  D  +++V GV  ++     TL+ L ++G    L     +R+D + LF
Sbjct: 6   IASVRGQVLAVRLDSAVVEVGGVGMLVLAAPATLAGL-RVGQEALLHTTLVVREDSLTLF 64

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +++ F ++Q+  GVG R+A+ +L+      +  ++  ++   + ++PGI  K A
Sbjct: 65  GFADADEKEVFEIVQTASGVGPRMALAMLAVHRPDGIRAAVAAEDHAALVRVPGIGKKTA 124

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI  EL  +    S              A + +  +     + ALV LGY    A   V
Sbjct: 125 QRICLELGDRLGPPSG-------TAAPVAAPLSAGDARREQVVEALVGLGYPLKHAGDVV 177

Query: 182 VSVLKKEKNIA-----DDSQIIRLALRAIS 206
             V+    +       D +  +R ALR +S
Sbjct: 178 DVVVGATPDAGAADDLDVAATLRAALRHLS 207


>gi|309388950|gb|ADO76830.1| Holliday junction DNA helicase RuvA [Halanaerobium praevalens DSM
           2228]
          Length = 198

 Score =  177 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     + V++ + G+ Y +     T     ++G    +F  T++R+D ++L
Sbjct: 1   MIGYLEGEVIEAEFNKVILGINGIGYELELAGFT--KQPRLGQKLEVFTYTYVREDVLKL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F     +Q F +L +V G+G    + +L+ + A   + +I+ +N   + +I GI  K 
Sbjct: 59  FAFPEKSYKQLFEILITVNGIGPSAGLNILNTMPAARFISAILQKNEVTLKEISGIGPKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K    + +        N   +          + + AL  LGY   +   A
Sbjct: 119 AQRLILELQSKLEDFAYLQ-------NNNDSEPVVTEEDRQDIVDALTVLGYKISEINKA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  + ++  + S+ I+L L  +
Sbjct: 172 LREI--EFESETNVSEKIKLTLSQL 194


>gi|238855608|ref|ZP_04645909.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3]
 gi|260665332|ref|ZP_05866180.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933018|ref|ZP_06338412.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|238831752|gb|EEQ24088.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3]
 gi|260560836|gb|EEX26812.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302872|gb|EFA95080.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
          Length = 193

 Score =  177 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 16/200 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++ +DV G  + IY   +  S     G    ++VE  +R + I L
Sbjct: 1   MYEYLEGTVTIITPSFIALDVGGQGFKIY-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + AM +++  ++  L ++I       + + PG+  K 
Sbjct: 58  YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S V+QD+   +  QA          +A+ AL  LGY + +    
Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166

Query: 181 VVSVLKKEKNIADDSQIIRL 200
              + K   + AD  + I+ 
Sbjct: 167 KPKLEKSTYDTAD--EYIKE 184


>gi|293384502|ref|ZP_06630374.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
 gi|291078181|gb|EFE15545.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
          Length = 163

 Score =  177 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMS 144
            A +++ +LKGK   L S       
Sbjct: 139 TAQQMILDLKGKLGELESSEAAGGG 163


>gi|293389007|ref|ZP_06633490.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
 gi|291081647|gb|EFE18610.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
          Length = 163

 Score =  177 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + ++ S      L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMS 144
            A +++ +LKGK   L S       
Sbjct: 139 TAQQMILDLKGKLGELESSEAAGAG 163


>gi|317051309|ref|YP_004112425.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5]
 gi|316946393|gb|ADU65869.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5]
          Length = 202

 Score =  177 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  + G +  L +D   ++   GV Y +  P    + L K+    ++     +++D I 
Sbjct: 1   MISLVSGTVHSLTQDRATILTSGGVGYELSIPASLATSL-KVDQTVSIQTWMGVKEDAIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  ++  F+LL  V G+GA++A+  +  +   +L  +I + +   I +IPG+  K
Sbjct: 60  LYGFSSSEEKALFLLLMKVSGIGAKIALAAVGTLNTQQLGNAIAMGDIATIQRIPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A +I  ELK K    ++      +            PS   +A+  L+ LG  +++A +
Sbjct: 120 VAEKIALELKDKVTPAAATSSAPQAFTGT----TSGTPSVFADAVQGLIALGLRREEADS 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
              +          ++ IIR  LR 
Sbjct: 176 --AARRAMAAGADSETSIIREVLRQ 198


>gi|194335574|ref|YP_002017368.1| Holliday junction DNA helicase RuvA [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|229560112|sp|B4SCR7|RUVA_PELPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194308051|gb|ACF42751.1| Holliday junction DNA helicase RuvA [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 200

 Score =  177 bits (450), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +  + V+++V G+ Y       T   L + G    LF    +R+D ++L
Sbjct: 1   MFAYFRGKLTSVLPEEVVVEVSGIAYQFLISAATHRQLPEQGSEVFLFSHLVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +RQ F LL    GVG ++A+ +LS ++  ++ ++I+    + +  I G+  K 
Sbjct: 61  YGFSGEEERQLFRLLLLTTGVGPKLALALLSGLSVQDIHDAILTNTPERLYGITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + LS V                S      +A++ALV LG+ +     A
Sbjct: 121 AARIILELRDKVLKLSPVSALASPA-------RLSSTLLRDDAVNALVTLGFSRIIVQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           VV++L++   +    ++I+ AL
Sbjct: 174 VVAILEQNPGLT-VEEVIKAAL 194


>gi|118475489|ref|YP_891982.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp.
           fetus 82-40]
 gi|166230534|sp|A0RP49|RUVA_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118414715|gb|ABK83135.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 184

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I       V I    GV Y I   + T + L K G+   LF+   +R+D   
Sbjct: 1   MIKAIEGIITKKEPTNVWIKTLSGVSYGISISLFTSASLQK-GEKVELFITQVIREDANL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+ + +++ F +L  V G+GA  AM V S +   E   +++  +  V+ ++PGI  K
Sbjct: 60  LYGFIKESEQRIFEMLLKVNGIGASTAMAVCSSLGPDEFSIAVMNGDDAVLRRVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  ++ +L                    +   I SMPS+   A  AL +LG+ +D+ + 
Sbjct: 120 TARTLIAQLSD-----------------AKFGEINSMPSYQNEAFMALESLGFKRDRISK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +      E +  D + +I+ AL+ ++
Sbjct: 163 VLN-----ECSSNDTASLIKEALKKLA 184


>gi|300768015|ref|ZP_07077921.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494364|gb|EFK29526.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 220

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
                G +  +   YV+I+V G+ Y +         +G       +++   + ++ + LF
Sbjct: 19  YEYFLGQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPT--AVKMYIHQAVSENGMSLF 76

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    ++  F  L  V G+G + A+ +L+      L+++I  +N+  +   PG+  K A
Sbjct: 77  GFFDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKTA 136

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            +I+ +LKGK   L+  V    +      A   ++        +     GY +       
Sbjct: 137 QQIVLDLKGKLNDLNVDVTGQTALDVDAPAVDGALADALAALEAL----GYSKADVKKVT 192

Query: 182 VSVLK-KEKNIADDSQIIRLALRAI 205
             +    +   AD + ++   LR +
Sbjct: 193 KKLETFSQTQGADTNTLLSEGLRLL 217


>gi|154174555|ref|YP_001408214.1| Holliday junction DNA helicase RuvA [Campylobacter curvus 525.92]
 gi|166230533|sp|A7GYC2|RUVA_CAMC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|112802462|gb|EAT99806.1| holliday junction DNA helicase RuvA [Campylobacter curvus 525.92]
          Length = 184

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I      +V++    GV Y ++  +   + L K G+   L     +R+D   
Sbjct: 1   MIRAIEGIITKKEPAFVVLKTAGGVSYGLFISLFCSAKLSK-GEKVELNTTQIIREDANL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F +L  + G+GA  AM + S ++      ++I  ++     +PGI  K
Sbjct: 60  LYGFLDTNEQKMFEMLIKLNGIGASTAMAICSSLSPNAFSNAVINGDADTFKSVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL                    +     S+P +   A+ AL  LG+ +++   
Sbjct: 120 TARRIIAELSD-----------------AKLISDESVPGYQNEALLALEALGFKREK--- 159

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +V +L   K+    S++++ AL+ ++
Sbjct: 160 -IVKILPDLKS-TSTSELVKEALKKLA 184


>gi|269123417|ref|YP_003305994.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis
           DSM 12112]
 gi|268314743|gb|ACZ01117.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis
           DSM 12112]
          Length = 200

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     +YV+ID+ GV Y IY  I+T   L  IG+   L++ T +++D I  
Sbjct: 1   MYEYFEGILSVKNLNYVVIDINGVGYKIYTSIKTYDKLNSIGEKERLYIHTIVKEDDISF 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++L+R  F+   ++ G+GA+ A+ +LS     EL      +N K +A++PGI MK 
Sbjct: 61  FGFKNELERSIFLECIAINGIGAKKAIAILSNFEFEELAAIASSKNFKELAKVPGIGMKK 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L  K   L                 I  + +   N   AL +LGY +      
Sbjct: 121 AEKIMVDLSDKLEGLKITNSSSS-------QDIVELYNKKENLRLALESLGYEKVNINNI 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +     KE N+    ++I++AL
Sbjct: 174 IEDKYIKELNM---QELIKMAL 192


>gi|256371996|ref|YP_003109820.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008580|gb|ACU54147.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 189

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       V+IDV GV Y ++      + L +  D C L++ T +R D I L
Sbjct: 1   MIGWLHGRVASAGRSPVVIDVAGVGYEVHVTAP-WATLLRRDDECELWIRTIVRADAIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  V GVG ++A+G+L  I   EL  +I  ++   +  I G+  K 
Sbjct: 60  YGFASQAEREAFDALIGVSGVGPQLALGILGGIEGDELWTAIATEDLGRLTAIAGVGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL   A  L+ V    MS                    +AL  LG+   +    
Sbjct: 120 AKRVVLELAPTAKRLAPVTGVPMSQEVSAL-------------RAALGELGFRPGE---- 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V+++     D    +R AL+ ++
Sbjct: 163 IDAVVRRCPGDLDFEAQVRWALKELA 188


>gi|254253224|ref|ZP_04946542.1| DNA recombination protein [Burkholderia dolosa AUO158]
 gi|124895833|gb|EAY69713.1| DNA recombination protein [Burkholderia dolosa AUO158]
          Length = 164

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 15/177 (8%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P+ T   L + G+   L  +  +R+D   L+GFL+  +R  F  L  + G+GAR+A+ V
Sbjct: 1   MPMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAV 60

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           LS ++  EL +++ +Q++  + ++PGI  K A R           L   ++  +      
Sbjct: 61  LSGMSVQELAQAVTMQDAARLTRLPGIGKKTAER-----------LLLELKGKLGADLGA 109

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A   S    A + ++AL+ LGY + +A  A+ +V          S+ I+LAL+A+S
Sbjct: 110 LAGAASPSDHAADILNALLALGYSEKEALAAIKNV----PAGTGVSEGIKLALKALS 162


>gi|328947934|ref|YP_004365271.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           succinifaciens DSM 2489]
 gi|328448258|gb|AEB13974.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           succinifaciens DSM 2489]
          Length = 206

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 10/192 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G + G +   + I+  G+ + +  P  +L  +  +G    +FV     ++ + L
Sbjct: 1   MFNSLTGVVTGKFPQKLFIETNGIEWDVTVPDTSLEKIPSVGIKGRVFVWMQHTENLMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  V G+G + A+ ++S I+   L E +   +   + ++PG+  K 
Sbjct: 61  FGFATENERALFFDLLKVDGIGPKGAVKIMSNISVAALAEILDSGDVDALKKVPGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+  LKGK               N++ +      +   + I ALV++GY + +A  A
Sbjct: 121 AGKIILSLKGKL----------SFVSNEKISSAVRKNNAYSDVIDALVSMGYDRAKAEDA 170

Query: 181 VVSVLKKEKNIA 192
           V  +  + ++  
Sbjct: 171 VSKISSELQSDE 182


>gi|148239406|ref|YP_001224793.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. WH 7803]
 gi|166231452|sp|A5GKN1|RUVA_SYNPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147847945|emb|CAK23496.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. WH 7803]
          Length = 215

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 20/219 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQG----------VCYIIYCPIRTLSCLGKIGDFCTLFVE 50
           MIG ++G     +E        G          V Y +    R  +  G  G  CTL+V 
Sbjct: 1   MIGWLQGERIQSWEQ------GGRRGVVVACGGVGYEVQLTSRDQNGQG-TGSACTLWVH 53

Query: 51  THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110
              R D   LFGF    +R  F  L  V GVG ++A+ +L      ELV +I+  + K +
Sbjct: 54  QVQRDDGSTLFGFCDQQERDLFRTLIGVNGVGPQMALALLDCCRVHELVAAIVDGDLKRL 113

Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVN 169
            Q  G+  + A RI  EL+ +  + + + +  +S V++       +    +  +   L  
Sbjct: 114 TQAQGVGKRTAERIAVELRDRLGNWAPLQEPSLSLVDRSDVKAIPLGEPCLRDLQITLET 173

Query: 170 LGYGQDQATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206
           LGY   +   A+ +V          D    +R +L+ +S
Sbjct: 174 LGYEDLEIRRAMRAVASGPDVPAEDDGDAWLRASLKWLS 212


>gi|229820484|ref|YP_002882010.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM
           12333]
 gi|259495635|sp|C5C5Q7|RUVA_BEUC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229566397|gb|ACQ80248.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM
           12333]
          Length = 200

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D V++ V GV   +     TL+ L ++   C L     +R+D + L
Sbjct: 1   MIALVQGRVAAIGLDAVVVVVGGVGMRVLATPATLAGL-RVEADCELHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F L+Q+V GVG R+A+ +L+  T   L  ++  ++   + ++PGI  K 
Sbjct: 60  FGFADADERDVFELVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDLAALVRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  +              V+              + + ALV LG+   QA  A
Sbjct: 120 ASRIVLELGDRLGPAQGAAPAAPVAVDDG-----------ADVVDALVGLGWPVRQAQDA 168

Query: 181 VVSVLKKEKNIA-DDSQIIRLALRAIS 206
           V  VL+     A D + ++R ALR+++
Sbjct: 169 VRGVLEDADGTAPDAAGLLRAALRSLA 195


>gi|159037423|ref|YP_001536676.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205]
 gi|189045766|sp|A8LXW8|RUVA_SALAI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157916258|gb|ABV97685.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205]
          Length = 200

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +I+V GV   + C   T++ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +  F LLQ+  GVG R+A  VL+  T   +  +I   ++  + ++PGI  K 
Sbjct: 60  YGFADDNAKALFELLQTASGVGPRLAQAVLAVHTPETVRAAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDRIGPV---------PVGGDGAAGVTTGAWPEQVRQALVGLGWTAGQAEQA 170

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           V +V +  +  +     ++R A+R +
Sbjct: 171 VAAVAETVDGEVPPVPVLLRQAIRLL 196


>gi|159903243|ref|YP_001550587.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9211]
 gi|229560117|sp|A9B9X1|RUVA_PROM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|159888419|gb|ABX08633.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9211]
          Length = 223

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG +KG     + +      ++   GV Y I    R L  L       ++++   +++D
Sbjct: 1   MIGWLKGEKIDHWNNGNRAGFVLSCNGVGYEIQLSRRNLIALNNYN-VLSIWIHQVLKED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF+   +R  F  L +V GVG ++AM +L   +  +L+ ++  +    + +  G+
Sbjct: 60  GSNLFGFIEKSERDLFRKLITVSGVGPQLAMSLLDDNSYEQLIANVQNKEVTKLTRSSGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R++ EL+ K        +       + ++             SAL NL Y   +
Sbjct: 120 GKRTAERLILELQNKLSDFDLNNEFSPPTKLRPESAEDLNEELLTEIKSALRNLDYSDFE 179

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              AV +V     + A  +   +L L++++
Sbjct: 180 ILEAVNTVTSNYLDDAASANERKLLLKSLN 209


>gi|170781148|ref|YP_001709480.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189045747|sp|B0REB9|RUVA_CLAMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169155716|emb|CAQ00837.1| holliday junction DNA helicase RuvA [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 214

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +    +L++V GV Y +    R    L + G   T+     +R+D + L
Sbjct: 1   MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL-RHGSEATVLTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F LL  V GVG + A+ VL  +    + +++  ++     ++ GI  K 
Sbjct: 60  FGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT- 179
           A  I+ +L GK        +   S             +   + ++AL+ LG+ +  A T 
Sbjct: 120 AKLIVLQLAGKLFVTQPRTRSASSAA----------STVTADVVTALIGLGWSERVARTA 169

Query: 180 --AVVSVLKKEKNIADDSQIIRLALRAI 205
                +   ++   AD  +++R+AL  +
Sbjct: 170 VDDAAAAAAEQGLPADMPRLLRVALGML 197


>gi|229553780|ref|ZP_04442505.1| crossover junction endoribonuclease subunit A [Lactobacillus
           rhamnosus LMS2-1]
 gi|229312854|gb|EEN78827.1| crossover junction endoribonuclease subunit A [Lactobacillus
           rhamnosus LMS2-1]
          Length = 212

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I+ +   Y++IDV G+ + +           + G    ++V+  +R++   L
Sbjct: 15  MYEYFEGTIQAVTPAYIVIDVNGIGFRLLV-ANPYDF--EAGKQTRIYVQLIIRENDQTL 71

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D++ F  L SV G+G + A+ +L+ +++  L  +I   + K + + PGI  K 
Sbjct: 72  YGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 131

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +LKGK  + +      +     + A   +    A+ A+      GY Q     A
Sbjct: 132 AAQIILDLKGKITTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQ----RA 181

Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206
           V  +    K  +       +R  LR +S
Sbjct: 182 VDGITDALKAFDATTTDAYLREGLRLLS 209


>gi|154148334|ref|YP_001406161.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC
           BAA-381]
 gi|166230535|sp|A7I0X0|RUVA_CAMHC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|153804343|gb|ABS51350.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC
           BAA-381]
          Length = 184

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G I      + ++  V GV Y I   +   + + K G+   L     +R+D   
Sbjct: 1   MIVAVEGIITKKEPTFCVLKTVTGVSYGISISLGCSARINK-GEKIELLTAQILREDADL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL + +++ F +L  + G+GA  AM V S +++   + +II  ++  +  +PGI  K
Sbjct: 60  LYGFLDEKEKRMFEMLIKLNGIGANTAMAVCSSLSSDNFLRAIINGDTATLTTVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    I L++  +Q                 + I  ISAL NLG+ +D+   
Sbjct: 120 TARRIIAELSDAKIELANDGEQ-----------------YKIETISALENLGFKRDKINK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            ++          + + +I+ AL+ ++
Sbjct: 163 ILL-----NCKSTNTADLIKEALKKLA 184


>gi|58584509|ref|YP_198082.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|75497985|sp|Q5GT34|RUVA_WOLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58418825|gb|AAW70840.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 196

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVET--HMRQDQI 58
           MIG + G ++ +Y D+++++V  V YIIY   + L  +  IG    L +ET  + R++  
Sbjct: 1   MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKAL-NVCYIGSKIKLLIETCANNRENTT 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF++  ++    LL  V GV  + AM +LS++T  +L  +I+ ++   + +I G+  
Sbjct: 60  QLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGP 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L              + +  +      +A+SAL+NLGY + +  
Sbjct: 119 KLINRIITELSGKVSKL--------------ETNNNNFYPINEDAVSALINLGYEKTK-- 162

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             V   +KK K   D   IIR AL+ +S
Sbjct: 163 --VYDTIKKYKPNLDTKDIIRTALKELS 188


>gi|291533989|emb|CBL07102.1| Holliday junction DNA helicase subunit RuvA [Megamonas hypermegale
           ART12/1]
          Length = 161

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 79/143 (55%), Gaps = 1/143 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  +  D+  IDV GV Y ++    T + L K+ +   LF    +R+D + L
Sbjct: 1   MIGYLQGKVTYIASDFCFIDVHGVGYRVFISTSTRAQL-KMNEEIKLFTYLSVREDAMLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++ L+   F  L SV  +G +  +G+LS +++ +L+ +I  +   ++   PGI  K 
Sbjct: 60  YGFINQLEYDVFCKLISVSKIGPKAGLGLLSSLSSEKLIWAIQNKQVSLLTNAPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDM 143
           A RI+ ELK K   L+  +  ++
Sbjct: 120 AERIVLELKDKLTELNLSISDEV 142


>gi|152992417|ref|YP_001358138.1| Holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1]
 gi|166231450|sp|A6Q8H2|RUVA_SULNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151424278|dbj|BAF71781.1| holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1]
          Length = 185

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 23/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +E     ++ ++V G+ Y I   I T + + +      LF+   +R+D   L
Sbjct: 1   MIVGMEGIVERRDPTFIHLNVNGIIYEIQVSINTSNAIQE--KRVKLFITQVIREDADLL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +++ F  +  + GVG +V + + S  T     + +  ++  ++ ++PGI  K 
Sbjct: 59  FGFMDTNEKKMFDTVLKINGVGPKVGLAICSTFTPETFAKVVASKDVSMLKRVPGIGPKA 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL    +               +             A+ AL +LG+ +D    A
Sbjct: 119 ASRILVELADFIV---------------DGNAAEGSSGALGEAVMALESLGFKKDAIQKA 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +           D S +++  L+ +
Sbjct: 164 LS------GCSGDTSTLVKEGLKKL 182


>gi|297624718|ref|YP_003706152.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM
           17093]
 gi|297165898|gb|ADI15609.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM
           17093]
          Length = 208

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 9/204 (4%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  +    +++        ++ P  TL  + ++G    L     ++++ + L+
Sbjct: 13  IAYLDGVVAEIRAGSLIVQAGAFGLEVFAPKPTL-MVCRVGSAVRLHTYFLVKEELLALY 71

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF        F  L  V GVG ++A+ +LS +    L  +I+  ++ ++A  PG+  K+A
Sbjct: 72  GFHDRDLHTLFTHLIGVSGVGPKLALALLSSMQTPLLAGAILQGDAGLLASTPGVGKKMA 131

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI+ +LK K         +++                A +A+ AL+ LGY + Q    V
Sbjct: 132 ERIILDLKNKLP-------EELLAPGARGKVTTLSSPAAEDAVGALLALGYRETQVKGVV 184

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +  KE   A    +IR AL  +
Sbjct: 185 AQLALKEPE-AGAETLIRKALAQL 207


>gi|15639532|ref|NP_218982.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025771|ref|YP_001933543.1| Holliday junction DNA helicase, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|6094206|sp|O83554|RUVA_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560146|sp|B2S3D5|RUVA_TREPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3322833|gb|AAC65527.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018346|gb|ACD70964.1| Holliday junction DNA helicase, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059920|gb|ADD72655.1| Holliday junction DNA helicase RuvA [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 227

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 9/215 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     + + ++V G+ + I     + +  G++G    +F   + R+D +RL
Sbjct: 1   MFESISGILTLHERERLCVEVHGIEWEIAVSAYSSAAFGEVGSHVKVFTWLYHREDALRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V+G+G + A+ VLS I++  L  ++   +   + +IPGI  K 
Sbjct: 61  FGFSNVQERTLFLSLTKVEGIGPKQALKVLSSISSQALCAALDTGDLCALQRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++  LKG      +      Q D    +              + ++ALV +GY +  
Sbjct: 121 AQRMLLALKGTLALTDAASCAQSQTDDRAAHPSNLGCAPHAREIEDLVTALVQMGYDRKM 180

Query: 177 ATTAVVSVLKKEKNI-----ADDSQIIRLALRAIS 206
           A   +        ++      +++ +++ A+ A+S
Sbjct: 181 AAEVIAQESAALCSVGRSLYEEEATVLKRAILALS 215


>gi|284991600|ref|YP_003410154.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM
           43160]
 gi|284064845|gb|ADB75783.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM
           43160]
          Length = 212

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 8/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  +++V GV   + C   T++ L ++G+   L     +R+D + L
Sbjct: 1   MIASVNGRVAAVSPDGAVVEVGGVGLAVQCTPGTIARL-QVGESARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  VL+     E+  ++ + + K + Q+PGI  K 
Sbjct: 60  YGFADDDERQLFELLQTANGVGPRLAQAVLAIHPPREVRRAVSMADVKALMQVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +    S+  Q D +      A     P +     SALV LG+   +A  A
Sbjct: 120 AERLILELRDRLGVTSTDTQLDGAAPAGLPAVTPVAP-WRDQLASALVGLGWTGKEADAA 178

Query: 181 VVSVLK------KEKNIADDSQIIRLALRAI 205
           +  +              + + ++R ALR +
Sbjct: 179 IGQLAPLADEQVTSTGSVEVAVLLRQALRLL 209


>gi|15642939|ref|NP_227980.1| Holliday junction DNA helicase RuvA [Thermotoga maritima MSB8]
 gi|4980659|gb|AAD35258.1|AE001701_11 Holliday junction DNA helicase [Thermotoga maritima MSB8]
          Length = 191

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + K G  C L     + QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK       S   +DM                   ++ ALV+LGY + QA  
Sbjct: 123 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALVSLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKQVYREGMK---TSELIKEALKFLS 189


>gi|148272996|ref|YP_001222557.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|166230540|sp|A5CS07|RUVA_CLAM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147830926|emb|CAN01870.1| Holliday junction DNA helicase subunit [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 214

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +    +L++V GV Y +    R    L + G   T+     +R+D + L
Sbjct: 1   MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL-RNGSEATVLTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F LL  V GVG + A+ VL  +    + +++  ++     ++ GI  K 
Sbjct: 60  FGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT- 179
           A  I+ +L GK                + ++   +  +   + ++AL+ LG+ +  A T 
Sbjct: 120 AKLIVLQLAGKL----------FVTQPRARSATSAASTVTADVVTALIGLGWSERVARTA 169

Query: 180 --AVVSVLKKEKNIADDSQIIRLALRAI 205
                +    +   AD  +++R+AL  +
Sbjct: 170 VDDAAAAAADQGLPADMPRLLRVALGML 197


>gi|303233139|ref|ZP_07319812.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4]
 gi|302480724|gb|EFL43811.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4]
          Length = 208

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           MI ++ G +  L   +V+IDV GV Y +       + L  + G    L     ++++ + 
Sbjct: 1   MIVQLSGTLVELTSSHVIIDVAGVGYELGISASCAAHLPAEKGSPLVLLTRMIVKENALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  + S+ GVG ++A+ +LS  T ++L+     Q+   ++Q+ G+  K
Sbjct: 61  LYGFADAYERLMFDTIISISGVGPKLALAILSLYTPSQLLTIAQTQDVAAMSQVSGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A R++ EL         +      +  + + A +        +A +AL ++G+   +  
Sbjct: 121 KAQRLLLELADMCARTGELQGCVSAAAPSAKAASVEQRGDPMFDARAALASMGFTAVEIE 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+        +      ++  ALR+++
Sbjct: 181 RALEGC---STDNQTAESLVAQALRSLA 205


>gi|6685946|sp|Q9WY12|RUVA_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 188

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + K G  C L     + QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK       S   +DM                   ++ ALV+LGY + QA  
Sbjct: 120 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALVSLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKQVYREGMK---TSELIKEALKFLS 186


>gi|154249486|ref|YP_001410311.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum
           Rt17-B1]
 gi|171769439|sp|A7HL71|RUVA_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154153422|gb|ABS60654.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum
           Rt17-B1]
          Length = 188

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G  +G  E  +L+ + GV + I     + S   + GD   ++ +  + Q+ + +
Sbjct: 1   MIEIIEGIYKGRSEGKILVSINGVVFGIITDAESFSEFNE-GDKILVYTKLIVSQEDMTI 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S + ++ F  L  V  +G + A+ +LS  T   L  +I   + + ++ IPGI  K 
Sbjct: 60  YGFDSKVKKETFEKLIKVSKLGPKTAIKILSSTTVDFLSNAIATGDVEKLSSIPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK                    +  +  +    + AI ALV+LGY + QA  A
Sbjct: 120 AERMITELKD-------------------EFEVVEVNEEMLEAIEALVSLGYSKTQARNA 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VLK+  NI++ S+II+ AL+ ++
Sbjct: 161 VSKVLKESPNISNVSKIIKEALKILA 186


>gi|257456050|ref|ZP_05621253.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC
           35580]
 gi|257446508|gb|EEV21548.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC
           35580]
          Length = 202

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G + G   + V I+  G+ + I+    +    G  G    ++   + R+DQ+RL
Sbjct: 1   MFNSISGTLTGKTAESVYIETHGIEWEIFVSTLSADRFGAAGSTVRVYTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R  F+ L  V+G+G + A+ +LS + +  L  ++   +   +  IPGI  K 
Sbjct: 61  FGFLTPAERSLFLDLTKVEGIGPKQALKILSGLDSAALEAALEAGDVARLQSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG+   L    + + +             S   + I AL+++GY + +A   
Sbjct: 121 AQKMVLALKGQLTGLQDSGRAETA-----------KKSEFEDIIIALIDMGYDRKRAAET 169

Query: 181 VVSVLKKE-----KNIADDSQIIRLALRAISC 207
           V +  +          A + ++ R A+  +S 
Sbjct: 170 VDAAAQSMRTQGIDPTAKEEELFRTAIVNLSS 201


>gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198]
 gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198]
          Length = 184

 Score =  175 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  L    +L+DV  V Y I+    +   L +  +   +++   +R+D   L
Sbjct: 1   MIFALKGKVFALEPAKLLLDVHDVIYEIHISFGSAEEL-QGKEEALVYISQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ +++Q F  L  + GVG +VA+ +LS  +A E +  I  ++   + ++PG+  K 
Sbjct: 60  FGFVTPMEKQIFDTLIKINGVGPKVALAILSTFSAQEFMAVIERKDIAALQKVPGVGTKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM EL G  + L                           A  AL NLGY +     A
Sbjct: 120 AGKIMVELSGAYVEL---------------LPKKDHTEHFQQAEMALENLGYKRAAIQKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+       ++   II+ AL+ +
Sbjct: 165 LKSI-----KASNVQDIIKEALKLL 184


>gi|310778214|ref|YP_003966547.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus
           DSM 2926]
 gi|309747537|gb|ADO82199.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus
           DSM 2926]
          Length = 199

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 93/207 (44%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +     +Y ++D+ G+ Y +   ++T   L  +G+   L++  ++R+D  +L
Sbjct: 1   MFEYLKGELTLKKLEYAVVDINGIGYKVNISLKTYEKLV-LGEKTKLYIYNYIREDMFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF  + +R  F +L +V G+G  +A+ +LS     ++ + +  ++ K++ ++P + +K 
Sbjct: 60  IGFAEEKERNLFEILINVNGIGVSLALAILSTFDVEDMRDIVSREDVKLLTKVPKLGIKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ++K K   L        S  +K                 AL +LGY +      
Sbjct: 120 AQKLIVDVKDKLKGLQLEEGASGSTASK-------GIQIEEELYMALESLGYSKKDIEKL 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V    ++          I+  L+ I  
Sbjct: 173 VTR--EEIMAYEGIEAAIKDVLKKIQS 197


>gi|315645785|ref|ZP_07898906.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453]
 gi|315278546|gb|EFU41860.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453]
          Length = 178

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 3/177 (1%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88
           +CP        K     T++   H+R D I LFGF S  +++ F  L  V G+G RVA+G
Sbjct: 2   FCPNP--YAFAKTEGTVTVYTHHHVRDDAILLFGFPSREEQKLFRKLIEVSGIGPRVALG 59

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
           +L   +   +V +I  +N   + ++PGI  K A R++ +LK K     +           
Sbjct: 60  ILGGGSPDHVVSAIYQENVSFLVKLPGIGKKTAQRMILDLKDKLEGFGNATMM-TGLFAI 118

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           ++    +  S    A   L  LGY   +     + +     +      +++ AL+ +
Sbjct: 119 QEPEAENDGSAWSEAREGLKALGYTDSELDKVWLKIKDSGASGESVDVLMKRALQQL 175


>gi|199598072|ref|ZP_03211495.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           rhamnosus HN001]
 gi|258507747|ref|YP_003170498.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
 gi|258538937|ref|YP_003173436.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc
           705]
 gi|84627155|gb|ABC59820.1| RuvA [Lactobacillus rhamnosus GG]
 gi|199590998|gb|EDY99081.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           rhamnosus HN001]
 gi|257147674|emb|CAR86647.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
 gi|257150613|emb|CAR89585.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc
           705]
 gi|259649095|dbj|BAI41257.1| holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
          Length = 198

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I+ +   Y++IDV G+ + +           + G    ++V+  +R++   L
Sbjct: 1   MYEYFEGTIQAVTPAYIVIDVNGIGFRLLV-ANPYDF--EAGKQTRIYVQLIIRENDQTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D++ F  L SV G+G + A+ +L+ +++  L  +I   + K + + PGI  K 
Sbjct: 58  YGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +LKGK  + +      +     + A   +    A+ A+      GY Q     A
Sbjct: 118 AAQIILDLKGKITTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQ----RA 167

Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206
           V  +    K  +       +R  LR +S
Sbjct: 168 VDGITDALKAFDATTTDAYLREGLRLLS 195


>gi|241895534|ref|ZP_04782830.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides
           ATCC 33313]
 gi|241871112|gb|EER74863.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides
           ATCC 33313]
          Length = 196

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 3/154 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++ID+QGV Y +         L       T++VE  +R +   L
Sbjct: 1   MYEYLKGTITAILPSYIVIDIQGVGYRVLVANPYAFSL---NSTMTVYVEQIIRDNDQNL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D+  F  L +V G+G + A+ +L+    T L+ +I   +   + + PGI  K 
Sbjct: 58  YGFLTKEDKDLFQKLLNVSGIGPKSALAILANSDHTGLINAITQNDIGFLTKFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
           A +I+ +L+ K   L+  +  +   V +E     
Sbjct: 118 AQQIVLDLQNKLSDLTLSIDDNNVSVQEEATDSE 151


>gi|61657382|emb|CAI44298.1| holliday junction DNA helicase [Thermotoga petrophila]
          Length = 191

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + + G+ C L     + QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK       S   +DM                   ++ AL++LGY + QA  
Sbjct: 123 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALISLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189


>gi|290890055|ref|ZP_06553138.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429]
 gi|290480246|gb|EFD88887.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429]
          Length = 178

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 13/187 (6%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
           IDV G+ + ++ P           D  T+F E  +R +QI L+GF +  +R  F  L +V
Sbjct: 3   IDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNQISLYGFKTVKERNLFQKLLNV 59

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
            G+G + A+ +++      L+ ++     K + + PGI  K A +I+ +LKGK    S  
Sbjct: 60  SGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDFSKN 119

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
           +            ++    +   +A++ALV LG+   +    +   L     +  D+  I
Sbjct: 120 I--------APMKNLLENSAELDDALAALVALGFSSKEVNK-INPKLASLGELTTDA-YI 169

Query: 199 RLALRAI 205
           +  L+ +
Sbjct: 170 QKGLKLL 176


>gi|148269895|ref|YP_001244355.1| Holliday junction DNA helicase RuvA [Thermotoga petrophila RKU-1]
 gi|166231455|sp|A5IKQ6|RUVA_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147735439|gb|ABQ46779.1| Holliday junction DNA helicase subunit RuvA [Thermotoga petrophila
           RKU-1]
          Length = 188

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + + G+ C L     + QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK       S   +DM                   ++ AL++LGY + QA  
Sbjct: 120 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALISLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186


>gi|288574886|ref|ZP_06393243.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570627|gb|EFC92184.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 202

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G +  +     ++DV G+ + +    R  S L  +G   +L            L
Sbjct: 1   MLAMVTGTVLDVTTQMAVVDVSGLGFEMQLT-RKASSLCSVGKEVSLHCHVQFSDAGPTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   L++  F+ L SV+G+G ++A+ VL  +TA  +V+++   +   +  +PGI  K 
Sbjct: 60  FGFADGLEKAVFLRLLSVRGIGGKLALQVLQGMTAEAVVQAVSFGDPSGLTGVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+ K         + +   + +      +P      + AL +LG+ +  ++ A
Sbjct: 120 AERICFELQEKM-------SEGLPKGSTDNLREMVVPDSET-VMEALESLGFQRQSSSEA 171

Query: 181 VVSVLKKEK--NIADDSQIIRLALRAISC 207
           + ++ KK    +      +I LALR ++ 
Sbjct: 172 LAAIAKKRGSVDGLGVEDLIMLALRELNS 200


>gi|282855630|ref|ZP_06264944.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter
           piscolens W5455]
 gi|282586560|gb|EFB91814.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter
           piscolens W5455]
          Length = 203

 Score =  174 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +    E   +++  G    +    R      ++G    L+    +    I L
Sbjct: 1   MLASIRGKVVERSEFTAVVECNGFGVEVLLTRRAAER-CELGTQVFLYTLLQVGDAGIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R+ F L+   +GVG + A+ +L  ++  E+V ++   + +++  +PGI  K 
Sbjct: 60  YGFADDTERRTFKLMILTKGVGGKAAISILQYLSPAEIVAAVEQNDIRLLTSVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL  +        +  +    +           A + + AL +LG+ +  A  A
Sbjct: 120 AERICFELSDRIHK-----KGFIQLTGEFHGAPAGDRQAAASVLDALESLGFDRASAVRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SV+ ++     +S+ I   LR +
Sbjct: 175 YKSVVAEQGEALGESETIMSCLRIL 199


>gi|61657514|emb|CAI44425.1| holliday junction DNA helicase [Thermotoga sp. RQ2]
          Length = 191

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + + G+ C L     + QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK       S   +DM                   ++ AL++LGY + QA  
Sbjct: 123 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALISLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189


>gi|42520918|ref|NP_966833.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99035955|ref|ZP_01315000.1| hypothetical protein Wendoof_01000161 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|81652227|sp|Q73G51|RUVA_WOLPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|42410659|gb|AAS14767.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 190

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 113/208 (54%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58
           MIG + G ++ +  D+++++V  V Y++Y   +TL+    IG    L +ET+   R++  
Sbjct: 1   MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLNA-CSIGSRVKLLIETYANNRENVA 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF+S  ++Q   LL  V GV  + AM +L ++T  +L  +I+ ++   + ++ G+ +
Sbjct: 60  QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILGKLTPEQLFLAIMNEDKVAL-KMSGLGL 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L              + +  +      +A+SAL+NLGY + +A 
Sbjct: 119 KLINRIITELSGKVSKL--------------EINNNNFHPINEDALSALINLGYEKMKAY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +    KK +   D   IIR+AL+ +S
Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELS 188


>gi|170288580|ref|YP_001738818.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2]
 gi|170176083|gb|ACB09135.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2]
          Length = 188

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + + G+ C L     + QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK       S   +DM                   ++ AL++LGY + QA  
Sbjct: 120 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALISLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186


>gi|19704439|ref|NP_604001.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296328207|ref|ZP_06870738.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22001978|sp|Q8REJ7|RUVA_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|19714701|gb|AAL95300.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296154719|gb|EFG95505.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 194

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+   L++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKLYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM------------DMLEDLVLALEGLGYNKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LEKI--DLNKFSSLEDAIKGILKNM 190


>gi|157164589|ref|YP_001466908.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826]
 gi|166230532|sp|A7ZDQ0|RUVA_CAMC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|112800289|gb|EAT97633.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826]
          Length = 184

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +      + ++    GV Y I+  +   + L K G+   L +   +R+D   
Sbjct: 1   MIKAIEGVVTKKEPAFAVLKTNSGVSYGIFISLFCSAKLSK-GEKVELAITQIIREDANL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F +L  + G+GA  AM V S +++     +II  ++     +PGI  K
Sbjct: 60  LYGFLDANEQKMFEMLIKLNGIGASTAMAVCSSLSSQAFTNAIISGDADTFKSVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL                    +     S+PS+   A+ AL  LG+ +++   
Sbjct: 120 TARRIIAELSD-----------------TKLISDESVPSYQNEALLALEALGFKREKIVK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +      +    + S +I+ AL+ +
Sbjct: 163 IL-----PDCKSENTSDLIKEALKKL 183


>gi|268317861|ref|YP_003291580.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252]
 gi|262335395|gb|ACY49192.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252]
          Length = 200

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V++DV G+ Y +  P  T   L ++G    L    ++R+D + L
Sbjct: 1   MIAYVSGKLAVKKLTEVVVDVHGLGYRLLIPTSTYEVLPEVGAPVHLLTHYYVREDAVLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F +L  V GVG R+A+  LS ++  ++ E++   + + + +IPG+  ++
Sbjct: 61  FGFATEAERALFEVLLGVSGVGPRLALAALSALSPAQIHEAVTTGDVQTLKRIPGVGQRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   L           +          +               +  A  +
Sbjct: 121 AERLIVELRDRLALLDLAELTPAGVDDVRAQARVDALAALEALGL-------PRAAAERS 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  VL++   I    ++IRLALR 
Sbjct: 174 LRKVLREHPGIQSAEELIRLALRE 197


>gi|332638256|ref|ZP_08417119.1| Holliday junction DNA helicase RuvA [Weissella cibaria KACC 11862]
          Length = 199

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 3/150 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +  +Y++++V G+ Y +       +    + +   ++VE  +R+++  L
Sbjct: 1   MYEYLNGVITEVAPNYIVVEVGGIGYRVLV-ANPYAF--PMNELERVYVEQIIRENEQSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L +V G+G + A+ +L+    T LV++I   +   + + PGI  K 
Sbjct: 58  YGFLTADEKLLFQKLLNVSGIGPKSALAILANADHTGLVQAIADNDITFLTKFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150
           A +I+ +L+ K   L      +++ V  E+
Sbjct: 118 AQQIVLDLQNKLGDLPFNNDIEINLVLPEK 147


>gi|187250915|ref|YP_001875397.1| Holliday junction resolvasome DNA binding subunit [Elusimicrobium
           minutum Pei191]
 gi|254766962|sp|B2KCD9|RUVA_ELUMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|186971075|gb|ACC98060.1| Holliday junction resolvasome, DNA binding subunit [Elusimicrobium
           minutum Pei191]
          Length = 202

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG I  L ED VLI V GV Y + C    +S L +  +      E+    D   L
Sbjct: 1   MIGYLKGQILSLSEDSVLILVNGVGYEVNCAPVAVSALEEGQETALYIAESISPYDGTVL 60

Query: 61  FGFLSDLDRQ-WFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGIS 117
           +GFL+  D+Q W +   S+   GA+ A+  L++   +  +   +I+ ++ K++  I G +
Sbjct: 61  YGFLTKEDKQLWAIFKTSIPNTGAKKALEYLNKALRSVADFHNAIVKKDPKILTGIFGFT 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +++  L GK           ++     +  I     F    + AL  LGY   +A
Sbjct: 121 AKTAEKLIHSLDGKM--------DAVTIAGVPKIKIEGEAPFMSEVMMALTALGYSPMEA 172

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A+  + K          IIR ALR +
Sbjct: 173 RKAIDQLYKTGLANDSVENIIRAALRIL 200


>gi|149194599|ref|ZP_01871695.1| Holliday junction DNA helicase motor protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135343|gb|EDM23823.1| Holliday junction DNA helicase motor protein [Caminibacter
           mediatlanticus TB-2]
          Length = 180

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 30/206 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I       + +DV+ + Y +   + T +           ++   +++++  L
Sbjct: 1   MIAALKGKIFEKDNGKIFLDVRDIIYELNVSLNTFAN----AKDGIFYITEIIKENEYSL 56

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +++ F  L  + GVG +VA+ + S  T  E +  I  Q+   + ++PGI  K 
Sbjct: 57  YGFINKNEKKLFDNLIKLNGVGPKVALAICSTFTPDEFISIISSQDINSLKKVPGIGPKS 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ E+                        I ++      A++AL NLG+ +     A
Sbjct: 117 AKRILMEMGD--------------------FEIENINPIISQAVTALENLGFKRADILKA 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +            II+ AL+ +S
Sbjct: 157 ISGL------DGSLEDIIKEALKRLS 176


>gi|283769122|ref|ZP_06342027.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219]
 gi|283104308|gb|EFC05686.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219]
          Length = 192

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 102/207 (49%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  + +DY++I+ QG+ +++Y P    S    +G+   +F    + ++ +RL
Sbjct: 1   MIAFIQGVITEIGDDYIVINHQGLGWLVYYPH---SLEVHVGEELQVFTHMSVSENDMRL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++  F+ L SV+G+G + AM +L +     + E+I   +   + ++PGI  K 
Sbjct: 58  YGFSSSKEKTLFLNLISVKGLGPKTAMTMLQKSGYALITEAISKGDVAALKKLPGIGAKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+GK +            V      + + P     A+ AL N GY        
Sbjct: 118 ASQIVLDLQGKLV-----------AVEVSSTKMMNYPLEIQEALEALKNFGYKGGD-LNV 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V + + ++ ++    + IR  L+  + 
Sbjct: 166 VGNKMLEQPSMK-TEEYIRFGLKFFAS 191


>gi|145628663|ref|ZP_01784463.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
 gi|144979133|gb|EDJ88819.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
          Length = 124

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 63/119 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKK 119


>gi|257459533|ref|ZP_05624642.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268]
 gi|257442958|gb|EEV18092.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268]
          Length = 184

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 26/208 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I        +I    GV Y +   + T + L + G    L     +R+D   
Sbjct: 1   MIAAIEGIITRKEPTACVIKCASGVSYALSLSLNTSAKLTQ-GKLTELACVQILREDADL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL + +++ F  L  + GVGA  AM V S +   +    +   ++  +  +PGI  K
Sbjct: 60  LYGFLDESEKKMFETLIKLSGVGASTAMAVCSTLAPQDFARCVATGDAATLTSVPGIGPK 119

Query: 120 IASRIMTELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A RI+ EL   K +                        ++   A SAL +LG+ +D+  
Sbjct: 120 TARRIIAELGDAKLMEFGP------------------SETYKNEAASALQSLGFKRDKIN 161

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +        +  + S +++ AL+ ++
Sbjct: 162 QILA-----GCSSTNTSDLVKEALKKLA 184


>gi|254303051|ref|ZP_04970409.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148323243|gb|EDK88493.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 194

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM------------DMLEDLVLALEGLGYNKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +   + I+  L+ +
Sbjct: 168 LEKI--DLSKFSSLEEAIKGILKNM 190


>gi|227488786|ref|ZP_03919102.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091208|gb|EEI26520.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 200

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +I+  GV Y       TL+ L  +G+   +     + +  + L
Sbjct: 1   MIASLHGEVVAKSLTGGVIECGGVGYEFLATAATLAELP-LGEDGRVLTTMVIGEKVVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F  LQ VQG+G ++A+  L+  + +E+  ++   + K +  IPG+  ++
Sbjct: 60  YGFAHDSERTMFSQLQGVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+++   L GK            S          +        ++ALV LG+ +D A  A
Sbjct: 120 AAKMTAVLDGKLDEFIDSTATTSSAAEPVTGGSET-------VVAALVQLGFDEDSANHA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                +      D    +R AL+ +
Sbjct: 173 AAWAEESNPGG-DTGTNLRHALQYL 196


>gi|227542217|ref|ZP_03972266.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182046|gb|EEI63018.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 200

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +I+  GV Y       TL+ L  +G+   +     + +  + L
Sbjct: 1   MIASLHGEVVAKSLTGGVIECGGVGYEFLATAATLAELP-LGEDGRVLTTMVIGEKVVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F  LQ VQG+G ++A+  L+  + +E+  ++   + K +  IPG+  ++
Sbjct: 60  YGFAHDSERTMFSQLQDVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+++   L GK            S          +        ++ALV LG+ +D A  A
Sbjct: 120 AAKMTAVLDGKLDEFIDSTATTSSAAEPVTGGSET-------VVAALVQLGFDEDSANHA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                +      D    +R AL+ +
Sbjct: 173 AAWAEESNPGG-DTGTNLRHALQYL 196


>gi|294101862|ref|YP_003553720.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM
           12261]
 gi|293616842|gb|ADE56996.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM
           12261]
          Length = 201

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 108/208 (51%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +  + E+ V++DV G+ + I C    L  L +  +   L     + ++   L
Sbjct: 1   MLRSLEGKVLHIGEENVILDVNGLGFDILCSGSAL-RLCEDNETIRLTTYLQVSENGATL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ +R+ F+ L +V+GVG RV + VL  ++ T+++ S+   ++    Q+PG+  K 
Sbjct: 60  FGFSSEQEREVFIKLLTVKGVGGRVGLAVLRTLSPTQVIRSVATSDTDTFLQVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK        + ++ ++   +E+     + +      +AL +LG+ Q++  + 
Sbjct: 120 AERLCFELK------RHLSEEMLAEFAEEEVPSILVKNTVA---AALRSLGFTQNEVYSV 170

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAI 205
           +  + ++  +  D ++   +++ ALR +
Sbjct: 171 MNRLKREMGSEFDTTKEDILLKRALREL 198


>gi|57167798|ref|ZP_00366938.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228]
 gi|305432180|ref|ZP_07401344.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           coli JV20]
 gi|57020920|gb|EAL57584.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228]
 gi|304444723|gb|EFM37372.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           coli JV20]
          Length = 183

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 25/207 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      + +I    G+ Y ++  +   + L +      LF+   +++D  +
Sbjct: 1   MVVAIEGIITKKEPTFAIIKCASGLSYGVFISLFCAAKL-ETHQKYELFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM + S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGASTAMAICSSLDVNSFYKALNLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL                     +  + S+      A++AL++LG+ QD+  +
Sbjct: 120 SAKRIIVELGD------------------AKVQLESVSDDKSEALAALLSLGFKQDKILS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +      N  D S++I+ AL+ ++
Sbjct: 162 VLST-----CNGKDTSELIKEALKKLA 183


>gi|189485463|ref|YP_001956404.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|254767397|sp|B1H0B1|RUVA_UNCTG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170287422|dbj|BAG13943.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 204

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 103/211 (48%), Gaps = 13/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFV---ETHMRQDQ 57
           MI  + G ++    D + IDV G+ Y I  PI T   L +  +   +++      M    
Sbjct: 1   MIDYLYGTLDSKSTDGITIDVNGIGYEISVPISTFLKLPETRNPIKIYIVESTAGMYGGV 60

Query: 58  IRLFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITA--TELVESIILQNSKVIAQIP 114
           I L+GF +  +R+ ++L++  V G+GA+ AM    +I+        +II +N  ++ +I 
Sbjct: 61  ISLYGFFTIEEREMYLLIKDKVHGIGAKKAMEYTDKISKSFANFKTAIISKNPSMLNEIF 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G + K A +++  LK K  +++ + ++      K+        +    AI+ L+ LGY  
Sbjct: 121 GFTKKTADKLIVALKDKISTVNVLNKE------KQTGAETIKNTMVSEAIAGLITLGYKM 174

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            QA  AV +V +  +NI     +I+ +L+ +
Sbjct: 175 QQARVAVTNVYEHNENIT-LEDLIKKSLQYL 204


>gi|300870312|ref|YP_003785183.1| Holliday junction DNA helicase RuvA [Brachyspira pilosicoli
           95/1000]
 gi|300688011|gb|ADK30682.1| holliday junction DNA helicase, RuvA [Brachyspira pilosicoli
           95/1000]
          Length = 194

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 99/208 (47%), Gaps = 16/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  + E  + +    GV Y I    +         D   L+ +   ++D + 
Sbjct: 1   MFAFIEGKVCTISEGIIALLCSNGVAYEIIVSKKLNVN---NDDNIRLYTQLIHKEDSMT 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +++ F  L S  GVGA++AM VLS  +  E++  +  ++  ++ ++ G+ +K
Sbjct: 58  LYGFKTREEKKMFNTLMSASGVGAKLAMEVLSTYSIDEIMHILFNKDINMLKKVQGMGVK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ E++ K   +   +       N+ ++          + I AL++LG+  ++A  
Sbjct: 118 KAEKLLFEIRDKIEKIDINISSSKISYNENES----------DVIKALISLGFSNNEAVK 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           A+ ++  + K       +I LALR +S 
Sbjct: 168 ALSNI--ENKENKTTEDLISLALRNLSS 193


>gi|255322240|ref|ZP_05363386.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277]
 gi|255300613|gb|EET79884.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277]
          Length = 184

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I       +++    GV Y +   +   + L + G    L +   +R+D   
Sbjct: 1   MIKAIEGIITKKEPANLILKTAGGVSYGVAISLFCSAKL-ERGQSVELNITQIIREDADL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F  L  + G+GA  AM V S +     + ++   ++  +  +PGI  K
Sbjct: 60  LYGFLDSNEQKMFETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    +++                   ++PS    AI AL +LG+ +++ T 
Sbjct: 120 TARRIIAELSDAKMTMDE-----------------NLPSHQHEAILALESLGFKREKITK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+      E +  +  ++I+ AL+ ++
Sbjct: 163 ALS-----ECDAQNTGELIKQALKKLA 184


>gi|83590537|ref|YP_430546.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica
           ATCC 39073]
 gi|123725675|sp|Q2RHT6|RUVA_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83573451|gb|ABC20003.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica
           ATCC 39073]
          Length = 202

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  +  + +L++  G+ +++     T       G    ++ +  +R+D + L
Sbjct: 1   MIGYLRGRLHLVTPEGILLETGGIGWLVRT--VTNRSWPAPGTEIAVYTQLVVREDAMEL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +   F LL+ V G+G R A+ +L      +L  +I   +S  +  +PGI  K 
Sbjct: 59  YGFTRPEELHLFTLLRGVNGIGPRGALQILGAAKPEQLSRAIAAGDSAFLTALPGIGAKK 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK   +    V   +   +           +  +         GY +++    
Sbjct: 119 AQRLLLELKDAVLKSGLVDGTETEAIPAGGGDNDEALAALLAL-------GYSREEIGPI 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V ++  N A  + +++  L+
Sbjct: 172 LARVRQELGNAAPTTAVLQAVLK 194


>gi|88607371|ref|YP_504791.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ]
 gi|123722839|sp|Q2GLG0|RUVA_ANAPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|88598434|gb|ABD43904.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ]
          Length = 191

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI-R 59
           MIG + G IE + +  +++ V GV YI++   RTL    K GD   L++ET++ +D + +
Sbjct: 1   MIGTLSGIIEEVQDTSIILAVGGVGYIVHVSYRTLIN-CKRGDSIKLYIETYVNRDNVPQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    ++    +L  V G+  R A+ +L R+T  +L  +I+ ++   + ++ G+  K
Sbjct: 60  LYGFTDTEEQNCLKMLIKVSGINYRTALAILDRLTPDQLFSAIVNEDKAAL-KVGGVGAK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           + +RI TEL      L   +        ++            +A+SAL++LGY + +   
Sbjct: 119 LINRIFTELTPLVQKLEFNIMDKRGPSVED-----------SDALSALLSLGYEKTRVLN 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  V        + S  +R AL+ +S
Sbjct: 168 ALEKV----GVSHNLSDTVRFALKELS 190


>gi|254246308|ref|ZP_04939629.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184]
 gi|124871084|gb|EAY62800.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184]
          Length = 164

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P+ T   L + G+   L  +  +R+D   L+GFL+  +R  F  L  + G+GAR+A+ V
Sbjct: 1   MPMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAV 60

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           LS ++  EL +++ +Q++  + ++PGI  K A R           L   ++  +      
Sbjct: 61  LSGMSVQELAQAVTMQDAARLTRLPGIGKKTAER-----------LLLELKGKLGADLGA 109

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A   S    A + ++AL+ LGY + +   A+ +V          S+ I+LAL+A+S
Sbjct: 110 LAGAASASDHATDILNALLALGYSEKEGLAAIKNV----PAGTGVSEGIKLALKALS 162


>gi|268679680|ref|YP_003304111.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617711|gb|ACZ12076.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 186

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 22/206 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +      +V +    G+ Y ++  + + + + ++ +  +L V   +R+DQ  
Sbjct: 1   MIVGIEGIVVKKEVTFVYLKTTSGLSYKVFISLFSSARI-QLNEKISLHVSQIIREDQHS 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+ + +++ F  L  + G+G   A+ V S ++  +   +++ QN     ++PGI  K
Sbjct: 60  LYGFVDENEKKVFDTLVKLNGIGPSTALAVCSTLSPDDFAHALVSQNISAFQKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL   ++ L                H     S    A  AL +LG+ ++    
Sbjct: 120 SAKRILVELSDFSLQL---------------LHEDFTNSSLQEASMALESLGFKKEMIKK 164

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +  +        D   II+ AL+ +
Sbjct: 165 VLSQI-----QGGDTQTIIKEALKKL 185


>gi|160934125|ref|ZP_02081512.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753]
 gi|156866798|gb|EDO60170.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753]
          Length = 168

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 10/175 (5%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L  IG    L+   ++R+D + LFGF S  +   F LL SV GVG +V + +LS
Sbjct: 1   MNTQRSLPAIGKEAVLYTHMNVREDAVDLFGFSSLAELNCFKLLTSVSGVGPKVGLAILS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  ++  ++   + K +    G+  K+A R++ ELK K  +L    +   +       
Sbjct: 61  VLSPEQVAVAVAAGDFKTLTMAQGVGNKLAQRVILELKDKLKALGGGEEVTAAAG----- 115

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +    A  A++AL  LGY        V  V+ K  +     ++IRL L+A++
Sbjct: 116 -VVNAAGNAAEAMNALTVLGYTPSD----VAPVVAKFDSSLPVEELIRLTLKAMA 165


>gi|262066188|ref|ZP_06025800.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum
           ATCC 33693]
 gi|294783453|ref|ZP_06748777.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA]
 gi|291380095|gb|EFE87613.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum
           ATCC 33693]
 gi|294480331|gb|EFG28108.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA]
          Length = 194

 Score =  170 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    +  +G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKI-DLGNKYKFYIYNHIKEDAYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ + +L  + G+G  +A+ VLS  +  ++VE I   +   + ++P +  K 
Sbjct: 60  IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LK K  +L+    + +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKAKLKNLTYTEVETISI------------DMLEDLVLALEGLGYTKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V       +   + I+  L+ +
Sbjct: 168 LEKV--DLSAYSSLEEAIKGILKNM 190


>gi|167847253|ref|ZP_02472761.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei B7210]
          Length = 162

 Score =  170 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 15/175 (8%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L   G+   L  +  +R+D   L+GFL+  +R  F  L  + GVGAR+A+ VLS
Sbjct: 1   MSTFYNLPHTGEKVVLLTQLIVREDAHLLYGFLTPPERSTFRELLKITGVGARMALAVLS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  EL +++ LQ++  + ++PGI  K A R           L   ++  +       A
Sbjct: 61  GMSVAELSQAVTLQDAARLTRVPGIGKKTAER-----------LLLELKGKLGADLGPLA 109

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              S    A + ++ALV LGY + +A  A+ +V          S+ I+L+L+A+S
Sbjct: 110 GAASPSDHATDILNALVALGYSEKEALAAIKNV----PAGTGVSEGIKLSLKALS 160


>gi|32266013|ref|NP_860045.1| Holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC
           51449]
 gi|44888424|sp|Q7VIU0|RUVA_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|32262062|gb|AAP77111.1| holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC
           51449]
          Length = 196

 Score =  170 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-----KIGDFCTLFVETHMRQ 55
           MI  ++G I  L   Y  IDV GV Y +   +   S L      +      +     +R+
Sbjct: 1   MIVGLRGTIIRLEPMYAEIDVGGVIYGMQMSLNATSMLQTKIDSQPDAPVKIICAQIIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   LFGF  ++++Q F  L  + GVG +VA+ +LS  T T   + I  ++ + + ++PG
Sbjct: 61  DAHLLFGFCEEIEKQTFERLIKISGVGPKVAIAILSTYTPTHFAKIIADKDIEALKKVPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I +K A++IM ++ G    L          +  ++  I    +    A  AL +LG+ ++
Sbjct: 121 IGVKGAAKIMVDIAGFFAQL----------LQSQEESIAPSNNLKYEASLALQSLGFKRN 170

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    +  +          S+I++ AL+ ++
Sbjct: 171 EIQKVLEHI-----EALSVSEIVKEALKRLA 196


>gi|218296106|ref|ZP_03496875.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23]
 gi|218243483|gb|EED10012.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23]
          Length = 191

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +    E   L+ V GV + +  P   L  L + G+   +     +R++ + L
Sbjct: 1   MIRYLKGVVARKEEGSFLLLVGGVGFQVQAPSPFLQGL-REGEEVGVHTHLALREEGLFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  +   + F LL SV GVG +VA+ +LS +    L +++   + +++    G+  ++
Sbjct: 60  FGFPEEESLKLFELLLSVSGVGPKVALALLSALPPRLLAQALAEGDLRLLTSASGVGRRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELKGK        ++  S   +E     +               G+ + QA + 
Sbjct: 120 AERLALELKGKVPKDLLTGEKVESREAEEAILALAAL-------------GFKEGQARSV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L K    A   ++I+ ALR +
Sbjct: 167 VLDLLAKNPG-AKAQELIKEALRRL 190


>gi|150020803|ref|YP_001306157.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis
           BI429]
 gi|166231454|sp|A6LLH1|RUVA_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149793324|gb|ABR30772.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis
           BI429]
          Length = 189

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    + ++V  + Y I     T      + +   +F +  +  D+I L
Sbjct: 1   MIYAMYGVLEDIENGKLYLNVNEIVYEIVVGD-TGYFEDFLNEKIKVFTKMIVNDDEISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF   L  + F  L  V  +G + A+ +++    + +V +I+ ++ K ++ +PGI  K 
Sbjct: 60  YGFSDVLKLKLFEKLILVNKLGPKSALKIITSSDVSYIVSAIVNEDVKTLSTLPGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK         + +                   + AI ALV LG+ ++Q+  A
Sbjct: 120 AERIILELKDSMKEFDVTLTE--------------KDKKILEAIEALVTLGFSRNQSKKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +LKK+ ++ D   II+ AL+ +S
Sbjct: 166 VTQILKKDDSLDD---IIKKALKFLS 188


>gi|157364836|ref|YP_001471603.1| RuvA domain-containing protein [Thermotoga lettingae TMO]
 gi|157315440|gb|ABV34539.1| RuvA domain protein [Thermotoga lettingae TMO]
          Length = 186

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 21/202 (10%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           +KG +       V++++ G    I C I TL    +IG    L       Q+ I ++GFL
Sbjct: 3   VKGTVHSKNGSSVILEINGFLIKILCDIETLEK-AQIGQTVQLHTHLEFSQEGITIYGFL 61

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S      F  +  V  +G + A+ ++S     ELV  II Q+ + +++ PGI  K A R+
Sbjct: 62  SKERLYVFEKILKVSKIGPKTALRIVSTSEPEELVHLIISQDVEKLSRFPGIGKKTAERL 121

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + ELK +   + S   +++S                 +AI ALV LG+G+ ++  A  SV
Sbjct: 122 IAELKDEEFEIKSDYSKELS-----------------DAIDALVALGFGKIESREAAKSV 164

Query: 185 LKKEKNIADDSQIIRLALRAIS 206
               K      QI++ AL+ +S
Sbjct: 165 YHSSKKA---EQIVKEALKMLS 183


>gi|237739486|ref|ZP_04569967.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31]
 gi|229423094|gb|EEO38141.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31]
          Length = 194

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    +  +G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKI-DLGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ + +L  + G+G  +A+ VLS  +  ++VE I   +   + ++P +  K 
Sbjct: 60  IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LK K  +L+    + +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKAKLKNLTYTEVETISI------------DMLEDLVLALEGLGYTKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V       +   + I+  L+ +
Sbjct: 168 LEKV--DLSAYSSLEEAIKGILKNM 190


>gi|320449357|ref|YP_004201453.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01]
 gi|320149526|gb|ADW20904.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01]
          Length = 191

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +    E   L+ V GV +++  P   L  L K G    +     +R++ + L
Sbjct: 1   MIRYLRGTVLKREEGGFLLLVNGVGFLVQAPQTFLQSL-KEGQEVAVHTHLQLREEGLFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +     F LL SV GVG +VA+ +LS +T   L +++   + +++    G+  ++
Sbjct: 60  YGFPDEESLLLFELLLSVSGVGPKVALSLLSALTPRLLAQALAQGDLRLLTAASGVGRRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELKGK        Q+                  A  AI AL  LG+ + QA   
Sbjct: 120 AERIALELKGKVPPSLLTGQK-------------VESQAAEEAILALTALGFKEGQARGV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L K  + A   ++I+ AL+ +
Sbjct: 167 VLDLLAKRPS-ASAQELIKEALKRL 190


>gi|73667297|ref|YP_303313.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str.
           Jake]
 gi|90134943|sp|Q3YRE0|RUVA_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72394438|gb|AAZ68715.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str.
           Jake]
          Length = 190

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 110/207 (53%), Gaps = 19/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR- 59
           MIG + G IE +Y  Y++++V  V YI++   R L    KIG+   L++ETH+ +D +  
Sbjct: 1   MIGSLTGIIEEIYITYIILNVGNVGYIVHVSQRVLQT-CKIGNNIKLYIETHVNRDNLTQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   ++ +  +L ++ G+  + AM +LS+++  ++  +++  N     +  GI  K
Sbjct: 60  LYGFLDKQEQDYMRMLITINGINYKTAMSILSKLSPEQIFSAVVSNNKNAF-RGNGIGEK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI TEL+ K   +       +                  ++++AL++LGY + +A  
Sbjct: 119 LAGRITTELQYKISKMPIEETLIIK---------------EDDSLAALISLGYDKLKAFN 163

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  + K +   A+  +IIR AL+ +S
Sbjct: 164 AIQEI-KSDFPNANIQEIIRKALQKLS 189


>gi|307718817|ref|YP_003874349.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM
           6192]
 gi|306532542|gb|ADN02076.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM
           6192]
          Length = 197

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 18/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G   G+  + VLI+  G+ + I  P   LS L   GD   L V  + R+D + L
Sbjct: 1   MLYSLSGVYRGIEGEKVLIETGGLTWEIDVPSSLLSQLPDPGDSLLLHVYLYHREDVLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R+ F+ L  VQG+G R A+ ++S +      E I  ++   +A+ PGI  K 
Sbjct: 61  IGFASREERRLFLDLLKVQGIGPRQALRIISSVPVPLFREIIQKEDLARLAKTPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG                 ++              + ALV +G+ + +A   
Sbjct: 121 AQKLLLTLKG--------------SYVRQGTGDTEEAGPHRELVEALVEMGFDRARAERV 166

Query: 181 VVSVLKKEKNIADDS----QIIRLALRAIS 206
           +  ++++            +I+R A+  +S
Sbjct: 167 LPDIIREVSEGEGVEGKEQEILRRAIIRLS 196


>gi|223040201|ref|ZP_03610480.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267]
 gi|222878562|gb|EEF13664.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267]
          Length = 184

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I       +++    GV Y +   +   + L + G    L +   +R+D   
Sbjct: 1   MIKAIEGVITKKEPANLILKTAGGVSYGVAISLFCSAKL-ERGQSVELNITQIIREDADL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F  L  + G+GA  AM V S +     + ++   ++  +  +PGI  K
Sbjct: 60  LYGFLDSNEQKMFETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    +++                   ++PS+   AI AL +LG+ +++ T 
Sbjct: 120 TARRIIAELSDAKMTMDE-----------------NLPSYQHEAILALESLGFKREKITK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+      E +  +  ++++ AL+ ++
Sbjct: 163 ALS-----ECDAQNTGELVKQALKKLA 184


>gi|33865569|ref|NP_897128.1| Holliday junction DNA helicase RuvA [Synechococcus sp. WH 8102]
 gi|44888398|sp|Q7U7F0|RUVA_SYNPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33632738|emb|CAE07550.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           8102]
          Length = 205

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 17/213 (7%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG +KG+++   +    + VLI   GV Y +    R    +         ++   +  D
Sbjct: 1   MIGWLKGDVQHRDQKGSRNLVLIACGGVGYDVQLIERDWQAV-STDQRHEFWIHQVVSAD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            ++LFGFL   +R  F  L  V GVG +  + +L+     ELV +++  + K + +  G+
Sbjct: 60  NLQLFGFLQLAERDLFRELIQVSGVGPQAGLALLNACAYKELVTALVHSDLKTLCRAKGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+ +              V         +   A + I+ L  LG+   +
Sbjct: 120 GKRTAERLALELRTRLTD----------SVASTGPERNQLDPVAPDLIATLETLGFETHE 169

Query: 177 ATTAVVSV--LKKEKNIADDSQIIRLALRAISC 207
              A+  +  +   ++  DD   +R  ++ +S 
Sbjct: 170 IRDALQRLNGMGGPQDGDDDDAWLRACIKLMSS 202


>gi|256026581|ref|ZP_05440415.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D11]
 gi|289764586|ref|ZP_06523964.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11]
 gi|289716141|gb|EFD80153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11]
          Length = 194

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190


>gi|237744846|ref|ZP_04575327.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1]
 gi|229432075|gb|EEO42287.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1]
          Length = 194

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ G+ Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LDKI--DLSKFSSLEDAIKGILKNM 190


>gi|34763029|ref|ZP_00144004.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|237742027|ref|ZP_04572508.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13]
 gi|256845368|ref|ZP_05550826.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2]
 gi|294785335|ref|ZP_06750623.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27]
 gi|27887289|gb|EAA24385.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|229429675|gb|EEO39887.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13]
 gi|256718927|gb|EEU32482.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2]
 gi|294487049|gb|EFG34411.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27]
          Length = 194

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L    ++ +S                 + I AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLIYTEEETVSM------------DMLDDLILALEGLGYNKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190


>gi|332298112|ref|YP_004440034.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           brennaborense DSM 12168]
 gi|332181215|gb|AEE16903.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           brennaborense DSM 12168]
          Length = 205

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I       + ++  G+ + I  P  TL  L  +G+   ++   + R+D ++L
Sbjct: 1   MFNSLYGTITAKLPQTIYLETDGIEWDIAVPDTTLDTLPPVGERARVYTWLYHREDAVKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F+ L  V GVGA+ A+ ++S I   +LVE++  ++   + ++PG+  K 
Sbjct: 61  FGFATAADRLLFLDLLKVDGVGAKGALKIMSGIAPRQLVEALDSEDLSQLERLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++M  LKGK            +   +         +   + I+AL ++GY +      
Sbjct: 121 AQKMMLTLKGKL--------ALSADSGRGSVQRSPSAAKWQDVITALADMGYDKKVCEET 172

Query: 181 VV------SVLKKEKNIADDSQII-RLALRAIS 206
           +       +     KN A   +++ R A+  ++
Sbjct: 173 IDRLEPILAAELDGKNKATQEELMFRRAIVELA 205


>gi|237752874|ref|ZP_04583354.1| holliday junction DNA helicase motor protein [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375141|gb|EEO25232.1| holliday junction DNA helicase motor protein [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 193

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           MI  ++G I       + +   GV Y ++  ++T   +   IG+   L     +R+D   
Sbjct: 1   MIIALEGEIFLKEPTRLGLKCTGVVYEVFISLQTSQQIQANIGEKLALHTTQIIREDAQM 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL  L++  F  L  + GVG +VAM +LS  T     + +   + K + ++PGI  K
Sbjct: 61  LFGFLELLEKTLFERLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL G ++ L            + ++      S     I AL +LGY  D    
Sbjct: 121 SAGRILVELSGWSLDL-----------VQGESLNVKKDSNLQQVILALESLGYKND---- 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +  V K  +N  + S +++ AL+ +
Sbjct: 166 VIARVTKGLEND-EVSAMVKAALKRL 190


>gi|227877607|ref|ZP_03995661.1| helicase Holliday junction [Lactobacillus crispatus JV-V01]
 gi|256844550|ref|ZP_05550036.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           125-2-CHN]
 gi|256849061|ref|ZP_05554494.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US]
 gi|262047543|ref|ZP_06020498.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           MV-3A-US]
 gi|293381579|ref|ZP_06627566.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1]
 gi|312977890|ref|ZP_07789636.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus
           CTV-05]
 gi|227862801|gb|EEJ70266.1| helicase Holliday junction [Lactobacillus crispatus JV-V01]
 gi|256613628|gb|EEU18831.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           125-2-CHN]
 gi|256713837|gb|EEU28825.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US]
 gi|260572119|gb|EEX28684.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           MV-3A-US]
 gi|290921849|gb|EFD98864.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1]
 gi|310895197|gb|EFQ44265.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus
           CTV-05]
          Length = 195

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV++DV GV Y +Y P          G    +F+E  +R   I L
Sbjct: 1   MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQ---GQKAKVFIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK     + + +  +  N        +P    +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYVARLDRPDNGEN--------VPPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              + K   N AD
Sbjct: 170 TPKLEKVAANTAD 182


>gi|322378554|ref|ZP_08053000.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS1]
 gi|322380312|ref|ZP_08054527.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS5]
 gi|321147264|gb|EFX41949.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS5]
 gi|321149016|gb|EFX43470.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS1]
          Length = 183

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 23/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  +   ++ +++ GV Y ++          +      L     +++D   L
Sbjct: 1   MIVGLRGIILQVLPTFIELEINGVVYGVHV---RAGENFESKQEVFLHTAQIIKEDGHSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +++ F  L  V GVG RVA+ +LS  +  +    I  ++ K + ++PG+  K+
Sbjct: 58  YGFLQRTEKELFERLLKVNGVGPRVALAILSTYSCADFSVCIQSKDLKALQRVPGVGAKL 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  +                Q       +    A+  L +LG+   +A   
Sbjct: 118 AGKIMLDLAGLVL----------------QEETEIKDTAIEQAVLGLQSLGFKTTEAFK- 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        D   +I+LAL+ +
Sbjct: 161 ---ICSNLPKGLDTPTLIKLALQQL 182


>gi|260494643|ref|ZP_05814773.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33]
 gi|260197805|gb|EEW95322.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33]
          Length = 194

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ G+ Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190


>gi|217077241|ref|YP_002334959.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B]
 gi|226725448|sp|B7IHQ4|RUVA_THEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|217037096|gb|ACJ75618.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B]
          Length = 189

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V ++V  + Y I     T      I     ++ +  +  D I L
Sbjct: 1   MIHALNGKVESIENGKVYVNVNDLIYEIIVGD-TGDFEEYINRNVKIYTKMVVNDDGISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL  +  + F  L  V  +G + A+ ++S  +   +V +II ++ K ++ +PGI  K 
Sbjct: 60  YGFLEVIKLKLFEKLIGVNKLGPKSALKIISSNSVESVVSAIINEDVKALSSLPGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK     L                 I       + AI ALV LG+ ++QA  A
Sbjct: 120 AERIVLELKDTIKELD--------------VSINEKDRKVLEAIEALVTLGFNRNQAKKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  K+  + D   II+ ALR +S
Sbjct: 166 VNKVAAKDDKLDD---IIKKALRFLS 188


>gi|315187235|gb|EFU20992.1| Holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM
           6578]
          Length = 197

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 18/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G   G+  + VLI+  G+ + I  P   LS L + GD   L+V  + R+D + L
Sbjct: 1   MLYSVRGVYRGVDGEKVLIETGGLTWEIDVPSSILSQLPEPGDSLLLYVYLYHREDVLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R+ F+ L  VQGVG R A+ ++S +      E I  ++   +A+ PGI  K 
Sbjct: 61  IGFASREERRLFLDLLKVQGVGPRQALRIISSVPVPIFREIIQNEDLARLAKTPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG      S V+Q      K   H           + AL  +G+ + +A + 
Sbjct: 121 AQKLLLTLKG------SYVKQGPGGTEKAGPH--------RELVEALAEMGFDRSRAESV 166

Query: 181 VVSVLKKEKNIADDS----QIIRLALRAIS 206
           +  ++++            +I+R A+  +S
Sbjct: 167 LPDIIQEVSGGESVEGKEQEILRRAIIRLS 196


>gi|295692269|ref|YP_003600879.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus
           crispatus ST1]
 gi|295030375|emb|CBL49854.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           crispatus ST1]
          Length = 195

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV++DV GV Y +Y P          G    +F+E  +R   I L
Sbjct: 1   MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQ---GQKAKVFIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D         +   +P    +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKL--------GDYVARLDRPDNGEDVPPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              + K   N AD
Sbjct: 170 TPKLEKVAANTAD 182


>gi|86152153|ref|ZP_01070365.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124320|ref|YP_004066324.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840938|gb|EAQ58188.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018042|gb|ADT66135.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 183

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASAQA-----TSTSELIKEALKKL 182


>gi|56416490|ref|YP_153564.1| holliday junction DNA helicase [Anaplasma marginale str. St.
           Maries]
 gi|222474859|ref|YP_002563274.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Florida]
 gi|255002828|ref|ZP_05277792.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Puerto Rico]
 gi|255003960|ref|ZP_05278761.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Virginia]
 gi|269959097|ref|YP_003328886.1| holliday junction DNA helicase motor protein [Anaplasma centrale
           str. Israel]
 gi|81359282|sp|Q5PBM0|RUVA_ANAMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766938|sp|B9KHQ6|RUVA_ANAMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56387722|gb|AAV86309.1| holliday junction DNA helicase [Anaplasma marginale str. St.
           Maries]
 gi|222418995|gb|ACM49018.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Florida]
 gi|269848928|gb|ACZ49572.1| holliday junction DNA helicase motor protein [Anaplasma centrale
           str. Israel]
          Length = 190

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 21/208 (10%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI- 58
           MIG + G +E +   + +++ V GV Y++  P R LS   + GD   L++ET++ +D + 
Sbjct: 1   MIGTLSGTVEEVVCSNRIILCVGGVGYLVQLPGRVLSG-CQHGDHVRLYIETYVGRDGVS 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF +  ++    +L  V GV  + AM +L  +T  ++  +I+ ++   + ++ G+  
Sbjct: 60  QLYGFANREEQNCMRMLIKVSGVNYKTAMAILDVLTPEQVFSAIVSEDRAAL-KVGGVGE 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ SRI++EL  +                 E     +       A++AL++LGY +  A 
Sbjct: 119 KLISRIISELTPQVQKF-------------ELNRFAATTRTDSEAVAALLSLGYERTAAL 165

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+  V             +R AL  +S
Sbjct: 166 GALQKV----GVCDSTEDAVRRALLELS 189


>gi|300692490|ref|YP_003753485.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum PSI07]
 gi|299079550|emb|CBJ52228.2| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum PSI07]
          Length = 162

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 15/175 (8%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L   G+   L  +  +R+D   L+GF +  +R+ F  L  + G+GAR+A+ VLS
Sbjct: 1   MSTFYNLPATGEKVVLLTQQIVREDAHLLYGFGTAAERETFRQLIKISGIGARIALAVLS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  EL +++ LQ +  + +IPGI  K A R           L   ++  +        
Sbjct: 61  GMSVAELAQAVTLQEAGRLTRIPGIGKKTAER-----------LLLELKGKLGADLGAVP 109

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              +M   A++ ++AL+ LGY   +A  A+  V          S+ I+LAL+A+S
Sbjct: 110 GGPAMSDDAVDVLNALLALGYSDKEAALAIKQV----PTGTGVSEGIKLALKALS 160


>gi|218462458|ref|ZP_03502549.1| Holliday junction DNA helicase RuvA [Rhizobium etli Kim 5]
          Length = 168

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 37  CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96
            LG  G+ C LF+ET++R+DQ++LFGF + L+R+WF LLQSVQGVGA+VA+ VLS +T  
Sbjct: 1   KLGSAGEACVLFIETYVREDQLKLFGFTTALEREWFNLLQSVQGVGAKVALAVLSTLTPG 60

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156
           EL  +I LQ+   +++ PG+  K+A R++TELK +A + +    + ++   K++      
Sbjct: 61  ELANAIALQDRAAVSRAPGVGPKVAMRLVTELKNRAPAFAG---EAINIALKQELGEGVA 117

Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +   +A+SAL NLGY +DQA  AV + +K     AD +++IRL L+ ++
Sbjct: 118 AAPVADAVSALTNLGYSRDQAANAVAAAMKTAGEGADSAKLIRLGLKELA 167


>gi|325001439|ref|ZP_08122551.1| Holliday junction DNA helicase RuvA [Pseudonocardia sp. P1]
          Length = 173

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
               TL  L + G+   L     +R++ + LFGF    +R+ F+LLQ+V G+G R+A+  
Sbjct: 1   ATPSTLGGL-RRGEETRLATTLVVREESLTLFGFADTEERELFLLLQTVSGIGPRLALAT 59

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           ++ +    L  ++   +  V+ +IPG+  K A R++ EL+ K  + ++            
Sbjct: 60  IAVLEPDTLRRALADGDLAVLTRIPGVGRKSAERLVVELRDKVTAPAAAP-----AGATS 114

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            A    +       + AL+ LG+ Q  A  AV  VL ++ +    S ++R AL ++
Sbjct: 115 AAAPSPVLGVREQVVEALLGLGFPQRPAEQAVDGVLAEQPD-TSASGLLRTALSSL 169


>gi|28572651|ref|NP_789431.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27]
 gi|28410783|emb|CAD67169.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27]
          Length = 174

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 97/185 (52%), Gaps = 15/185 (8%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            G+ +++  P        ++     L+    +R+D + L+GF S L+   F  L ++ GV
Sbjct: 2   HGIGFLVRVPQSFN---PEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFEQLITISGV 58

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141
           G RVA+ +LS +T  E+  +++  + K + ++ G+  K+A  I+ +L GK  S+    ++
Sbjct: 59  GPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLAGTIVLQLAGKLTSVPLENRK 118

Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201
               V++           +   + AL+ LG+ + ++  AV SVL+K++++    +I+R A
Sbjct: 119 QEQAVDR-----------SAEIVQALIGLGWQRQESAAAVESVLEKDQSLT-MPEILRNA 166

Query: 202 LRAIS 206
           LR ++
Sbjct: 167 LRYLA 171


>gi|148926965|ref|ZP_01810642.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845049|gb|EDK22146.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 183

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCTSGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASAQATG-----TSELIKEALKKL 182


>gi|57237644|ref|YP_178892.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221]
 gi|86153371|ref|ZP_01071575.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613230|ref|YP_001000488.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157415070|ref|YP_001482326.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205356769|ref|ZP_03223528.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|73621848|sp|Q5HUZ3|RUVA_CAMJR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230537|sp|A1VZE7|RUVA_CAMJJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172047113|sp|A8FLL2|RUVA_CAMJ8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57166448|gb|AAW35227.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221]
 gi|85843097|gb|EAQ60308.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249483|gb|EAQ72443.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157386034|gb|ABV52349.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205345336|gb|EDZ31980.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|307747711|gb|ADN90981.1| Holliday junction ATP-dependent DNA helicase ruvA [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315058253|gb|ADT72582.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315931217|gb|EFV10189.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 183

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASAQATG-----TSELIKEALKKL 182


>gi|227534464|ref|ZP_03964513.1| crossover junction endoribonuclease subunit A [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187863|gb|EEI67930.1| crossover junction endoribonuclease subunit A [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 212

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I+ +   Y++IDV G+ + +           + G+   ++V+  +R +   L
Sbjct: 15  MYEYFEGIIQAVTPAYIVIDVHGIGFRLLVANPYHF---EAGEQKRVYVQLIIRDNDQTL 71

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F  L +V G+G + A+ +L+ +++  L  +I   + K + + PGI  K 
Sbjct: 72  YGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 131

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +LKGK  +        ++ V  +     +    A+ A+      GY Q      
Sbjct: 132 AAQIILDLKGKITTDGQPAAAAIAPVASDVDSELADALAALVAL------GYPQRTVDGL 185

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             ++  K  +       +R  LR +S
Sbjct: 186 TDTL--KAFSAKTTDAYLREGLRLLS 209


>gi|315453042|ref|YP_004073312.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
 gi|315132094|emb|CBY82722.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
          Length = 181

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 25/205 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G++  +    + ++V+GV Y +   + T S L + G    L+     ++    L
Sbjct: 1   MIVGLIGHVHSIEPTLIALNVRGVVYGVQVSLHTSSLLQE-GQEVHLYTSLISKEGDQSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +R  F+ L  + GVG ++A+ +LS  T  E    +  Q++K + ++PG+  K+
Sbjct: 60  FGFLELEERALFVRLIKISGVGPKIALAILSVYTPLEFATLLETQHTKALQKVPGVGSKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+IM +L+G   S                          I A+ AL +LG+   +    
Sbjct: 120 ASKIMFDLEGYLPS-------------------AHQDPAYIQAVQALESLGFKSLEVQKV 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                  +       ++I+ AL+ +
Sbjct: 161 CA-----DLKGLSTEEMIKEALQKL 180


>gi|312622645|ref|YP_004024258.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203112|gb|ADQ46439.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 197

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++   L
Sbjct: 1   MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 61  --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V        N  +               AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVATTAGKGENNYE--------KLEEISLALLSLGYDIDEVY 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|254796929|ref|YP_003081766.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str.
           Illinois]
 gi|254590177|gb|ACT69539.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str.
           Illinois]
          Length = 193

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 105/205 (51%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +  L ++ +++DV GV Y ++   R +  L + G   +L++E +  ++  +L
Sbjct: 1   MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFSENINKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++   +L  V+G+  ++A+ +L+ +   EL+ +I  ++   + +I GI  K+
Sbjct: 60  YGFECKKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RI+TE     + L   +   +S  N               A+SALV LG+    +   
Sbjct: 119 VKRIITETYEDFLKLDLQLPGTVSSTNIH---------IVSEAVSALVKLGFQHKPSHKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ ++  +  I + +++I LAL+ +
Sbjct: 170 VMEIMTNQPAI-EIAELITLALKML 193


>gi|86150190|ref|ZP_01068417.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597606|ref|ZP_01100840.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562427|ref|YP_002344206.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20455273|sp|Q9PPC1|RUVA_CAMJE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85839306|gb|EAQ56568.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190198|gb|EAQ94173.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360133|emb|CAL34927.1| putative Holliday junction ATP-dependent DNA helicase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926045|gb|ADC28397.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315928270|gb|EFV07586.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929355|gb|EFV08561.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 183

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +VS           S++I+ AL+ +
Sbjct: 162 VLVSAQATG-----TSELIKEALKKL 182


>gi|317178761|dbj|BAJ56549.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F30]
          Length = 183

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+V+GV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVRGVVYEVQVSMRT-SALLQAGQEARLKILQVIKEDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+ GI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVQGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L      +   +Q + S V                   AL +LG+   +    
Sbjct: 120 ADKIMVDL------IGFFIQDETSPV-------------RNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|283957218|ref|ZP_06374680.1| putative Holliday junction ATP-dependent DNA helicase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791290|gb|EFC30097.1| putative Holliday junction ATP-dependent DNA helicase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 183

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALTALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASAQATG-----TSELIKEALKKL 182


>gi|148927930|ref|ZP_01811336.1| Holliday junction DNA helicase RuvA [candidate division TM7
           genomosp. GTL1]
 gi|147886719|gb|EDK72283.1| Holliday junction DNA helicase RuvA [candidate division TM7
           genomosp. GTL1]
          Length = 187

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 18/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +   + D ++IDV GV Y +         L  + +   L+   H+R+    L
Sbjct: 1   MIAHVVGRLTEKFIDSIIIDVNGVGYEVLVTALEYEEL-ALQEEVKLYTYHHVREQVEEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   ++ F LL +VQG+G + A+ +LS      +  +I   +S  I +  G+  + 
Sbjct: 60  YGFSSLAGKRLFELLITVQGIGPKAALAILSLGDPEVVRSAIASSDSGFIQRASGVGKRT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L  K    S            +                      Y   QAT  
Sbjct: 120 ADRVVVDLADKVGLPSQAGHTPKQAGGDDALDALLALG-------------YNVRQAT-- 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL +        + +R AL+ +
Sbjct: 165 --EVLAELDTTLTVEEKVRQALKRM 187


>gi|116494312|ref|YP_806046.1| Holliday junction DNA helicase RuvA [Lactobacillus casei ATCC 334]
 gi|191637648|ref|YP_001986814.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BL23]
 gi|239629698|ref|ZP_04672729.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065824|ref|YP_003787847.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|122264259|sp|Q03B18|RUVA_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560092|sp|B3WC55|RUVA_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116104462|gb|ABJ69604.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus casei
           ATCC 334]
 gi|190711950|emb|CAQ65956.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           casei BL23]
 gi|239528384|gb|EEQ67385.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438231|gb|ADK17997.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|327381703|gb|AEA53179.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W]
 gi|327384869|gb|AEA56343.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II]
          Length = 198

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I+ +   Y++IDV G+ + +           + G+   ++V+  +R +   L
Sbjct: 1   MYEYFEGIIQAVTPAYIVIDVHGIGFRLLVANPYHF---EAGEQKRVYVQLIIRDNDQTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F  L +V G+G + A+ +L+ +++  L  +I   + K + + PGI  K 
Sbjct: 58  YGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +LKGK  +        ++ V  +     +    A+ A+      GY Q      
Sbjct: 118 AAQIILDLKGKITTDGQPAAAAIAPVASDVDSELADALAALVAL------GYPQRTVDGL 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             ++  K  +       +R  LR +S
Sbjct: 172 TDTL--KAFSAKTTDAYLREGLRLLS 195


>gi|146296577|ref|YP_001180348.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166230531|sp|A4XJS2|RUVA_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145410153|gb|ABP67157.1| Holliday junction DNA helicase subunit RuvA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 197

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++   L
Sbjct: 1   MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 61  --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   +L+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDYQQLIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V                           AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVAST--------SGTEEKTYEKLEEISLALLSLGYEIDEIN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|206901849|ref|YP_002251320.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum
           H-6-12]
 gi|206740952|gb|ACI20010.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum
           H-6-12]
          Length = 193

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 20/204 (9%)

Query: 4   KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIRLFG 62
            I G +  + ED+V++D     + IY        L  K+GD   L+V   + +D ++LFG
Sbjct: 6   HIYGKLLRIAEDFVVVDTGAFGFKIYIGKNLALKLNEKLGDNVLLYVAEVIEKDNVKLFG 65

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           FLS+ +R  F  L+++ GVG ++A+ ++S +   E  E +  ++   +  IPGI  KIA 
Sbjct: 66  FLSEEERDLFESLKNITGVGVKIALRIVSTLPPKEFYEVLEKEDLNTLLNIPGIGKKIAQ 125

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           +I  E+KG                N E+  I +          AL+NLGY +      + 
Sbjct: 126 KIFLEIKGVIPK---------RVYNDEENVIKN----------ALLNLGYDKKDIELVMR 166

Query: 183 SVLKKEKNIADDSQIIRLALRAIS 206
            + K+ K++ +  +II+ AL+ +S
Sbjct: 167 DIRKEFKSLDNLEEIIKFALKRLS 190


>gi|153952036|ref|YP_001398280.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|166230536|sp|A7H450|RUVA_CAMJD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152939482|gb|ABS44223.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 183

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDINSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTRTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASAQATG-----TSELIKEALKKL 182


>gi|312127829|ref|YP_003992703.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777848|gb|ADQ07334.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 197

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  +I
Sbjct: 1   MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNGTKFSEF--LGKEKRVYVSLKFNENLSEI 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK                V                   AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKK--------EFKVGSTSGKEEKTYEKLEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|317009536|gb|ADU80116.1| Holliday junction DNA helicase RuvA [Helicobacter pylori India7]
          Length = 183

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+ QGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEAQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181


>gi|284929265|ref|YP_003421787.1| Holliday junction DNA helicase subunit RuvA [cyanobacterium UCYN-A]
 gi|284809709|gb|ADB95406.1| Holliday junction DNA helicase, RuvA subunit [cyanobacterium
           UCYN-A]
          Length = 213

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 109/215 (50%), Gaps = 15/215 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMR 54
           MI   KG+   + +D      ++++V  + Y I    +    L  K  D+  +F+    R
Sbjct: 1   MINYFKGSFVEILKDTKNKIVLIMEVNQIGYEIQITSKLEEKLSNKKSDYIQVFIHLQTR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +D   L+GF++ L+++ F  L ++ G+GA++++ +L+ + + +L++++   N K++++ P
Sbjct: 61  EDSQILYGFINKLEQELFRQLININGIGAQLSITLLNTLGSEKLIKAVCSGNVKMLSESP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A RI+ EL  K + L    +     +  E     S  +   +  S+L+ LGY +
Sbjct: 121 GVGKKTAERIILELNSKLLKLIEAFE-----IKVELHSCNSSENTLEDITSSLLLLGYDR 175

Query: 175 DQATTAVVSVLKKEKNIA---DDSQIIRLALRAIS 206
           +     V   LK  + ++   +  +++R A+  +S
Sbjct: 176 EGVDR-VTVYLKNNQFLSKQINTEELLRTAITWLS 209


>gi|88608038|ref|YP_506455.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str.
           Miyayama]
 gi|123763710|sp|Q2GDJ1|RUVA_NEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|88600207|gb|ABD45675.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str.
           Miyayama]
          Length = 193

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +  L ++ +++DV GV Y ++   R +  L + G   +L++E +  ++  +L
Sbjct: 1   MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFLENINKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++   +L  V+G+  ++A+ +L+ +   EL+ +I  ++   + +I GI  K+
Sbjct: 60  YGFECRKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RI+TE     + L S +    S  N            A  A+SALV LG+    +   
Sbjct: 119 VKRIITETYEDFLKLDSHLSGIASSTNVH---------IASEAVSALVKLGFQHKPSHKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ ++ K   I + +++I LAL+ +
Sbjct: 170 VMEIMTKRPAI-EIAELITLALKML 193


>gi|312877191|ref|ZP_07737160.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796000|gb|EFR12360.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 197

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ ++ +YV+I+   +   I+C     S    +G    ++V     ++   L
Sbjct: 1   MIDSIVGIIQEVFSNYVIINYNNIYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58

Query: 61  --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        VV                          AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVVATT--------GKEEKTYEKLEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|158316901|ref|YP_001509409.1| DNA recombination protein RuvA [Frankia sp. EAN1pec]
 gi|158112306|gb|ABW14503.1| DNA recombination protein RuvA domain I [Frankia sp. EAN1pec]
          Length = 239

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E L     ++DV GV  +++C   TL+ L ++G+   L     +R+ ++ L
Sbjct: 1   MIASVSGTVEVLSPGSAVVDVGGVGVLVWCTPSTLARL-RVGERARLATTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F +LQ   GVG R+A  VL   +   +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFRDADERDVFEILQGAAGVGPRLAQAVLGVHSPDVIRRAVAEEDLATLTKVPGIGRKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ +    SS V    +      A    + +       ALV LGY   +A  A
Sbjct: 120 AQRIVLDLRDRLGPPSSPVPPQRAAAPPPAAADPRLGAAGEQVRDALVGLGYSAKEALDA 179

Query: 181 VVSV 184
           VV+ 
Sbjct: 180 VVAA 183


>gi|225847962|ref|YP_002728125.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644479|gb|ACN99529.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 181

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 28/207 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG I  + ++ ++++  G    I  P        K  D  T++    +++++IR+
Sbjct: 1   MLEFIKGKIVKVDKNKIIVEKDGFGIKINVPDS-----EKFSDEDTVYTILKVKEEEIRV 55

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF +  +++ F  L  + GVG + A+ +L   +  E ++ +   +   + ++ GI  K 
Sbjct: 56  IGFKTQEEKELFNKLTQIHGVGEKHALAILGHFSIDEFIDILDQSDVDSLTKVQGIGKKT 115

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK                       S  S   + +  L NLG+ ++Q+   
Sbjct: 116 AQRIIVELKGKVD--------------------FSENSLIQDFVKTLTNLGFDKEQSYKV 155

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           V  +LK++ N      I++ A+  +S 
Sbjct: 156 VRKLLKEDNN---VENILKKAISTLSS 179


>gi|289523150|ref|ZP_06440004.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503693|gb|EFD24857.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 196

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  + E+ V++DV G    I C    LS L K     TL     + +    L
Sbjct: 1   MIKFVSGAVVSVEENIVVLDVSGFGMEIICSREALS-LCKPSKKVTLPTYLAVSESGPSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R++F++L++V+G+GAR A+ +L  ++A EL+E I  +N + + ++PG+  K 
Sbjct: 60  YGFGDDFEREFFLMLKNVKGMGARTAISILRWLSARELIEIIAEKNLEKLEKVPGVGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K   L +  +      +K                 AL  L + + +   A
Sbjct: 120 AERICFELKDKTKKLFTGKKGTYERSDKLML-----------VRLALKELNFSEGEIDRA 168

Query: 181 VVSVLKKEK-NIADDSQIIRLALRAIS 206
           + S+    K +   +  +++ AL+ +S
Sbjct: 169 IGSLQTNAKIDEESEEVLLQKALKVLS 195


>gi|312793294|ref|YP_004026217.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180434|gb|ADQ40604.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 197

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ ++ +YV+++   V   I+C     S    +G    ++V     ++   L
Sbjct: 1   MIDSIVGIIQEVFSNYVILNYNNVYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58

Query: 61  --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V                           AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVAATT--------GKEEKTYEKLEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|217967994|ref|YP_002353500.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM
           6724]
 gi|217337093|gb|ACK42886.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM
           6724]
          Length = 192

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 21/204 (10%)

Query: 4   KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIRLFG 62
            I G +  ++ D ++ID     + IY      S L  ++ +   L++   + +D I+ FG
Sbjct: 6   HIYGKLLKIHGDSLIIDTGNFGFKIYVSKNLTSKLSEELNNKILLYIAEVIEKDGIKFFG 65

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           FLS+ +R  F  L+++ GVG ++A+ ++S ++  E  E I  ++   +  +PG+  KI  
Sbjct: 66  FLSEEERDLFERLKNITGVGIKIALRIVSAMSPKEFYEVIEKEDLNALLMVPGVGKKITQ 125

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           +I  E+KG         +  +                       L+NLGY +++    + 
Sbjct: 126 KIFLEIKGVIPKREHKEEDIIKDT--------------------LLNLGYKKEEIEVVMK 165

Query: 183 SVLKKEKNIADDSQIIRLALRAIS 206
            + K+ K++ +  +IIR ALR +S
Sbjct: 166 EIRKEFKDLDNLEEIIRFALRKLS 189


>gi|283954372|ref|ZP_06371893.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794171|gb|EFC32919.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 183

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLSDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    + L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTNMKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ ALR +
Sbjct: 162 VLAS-----SQAIGTSELIKEALRKL 182


>gi|323359952|ref|YP_004226348.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium
           testaceum StLB037]
 gi|323276323|dbj|BAJ76468.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium
           testaceum StLB037]
          Length = 206

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 11/175 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G    + ED ++I V GV + +    +  +    +GD   +     +R+D + L
Sbjct: 1   MISSLHGTAAHVAEDSLVIVVGGVGFSVAVTSQ-FARTVHVGDDVHVHTNLIVREDALSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L SV GVG + A+GVLS +T  ++ +++   +     ++ GI  K 
Sbjct: 60  YGFESREELTVFTQLISVTGVGPKSALGVLSSLTVPQIAQAVTDDDDAPFRRVSGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A  I+ +L GK   + +     ++   +    +            ALV LG+ + 
Sbjct: 120 AKLIVVQLAGKLAVVPAAAPAAVAGHGQVPLQVT----------QALVGLGWTER 164


>gi|89068047|ref|ZP_01155464.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus
           HTCC2516]
 gi|89046286|gb|EAR52343.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus
           HTCC2516]
          Length = 222

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 17/221 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++    D+VLI V GV Y++Y   R ++ L   G+  +LF +  +R+D ++L
Sbjct: 1   MIGRLTGRLDYRAGDHVLISVGGVGYVVYVSERVMAALPGNGEPVSLFTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  +I L +++ I+   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDARAISVAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---------------SFAINAIS 165
           A R++ EL+ KA  + ++     + + +  A                     +   +A+S
Sbjct: 121 AERVVRELRDKAPGVMALGGSIEAALGEVPAAADDGAVLEPADAAPPRAPAGAAQSDALS 180

Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           ALVNLGY       A           ++ + +IR AL+ ++
Sbjct: 181 ALVNLGYAPA--EAAGAIAEATGAGESETAGLIRAALKLLA 219


>gi|222529107|ref|YP_002572989.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254766939|sp|B9MRB2|RUVA_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222455954|gb|ACM60216.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 197

 Score =  160 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++   L
Sbjct: 1   MIDSIVGIIQEVFSNYVILNYNNLYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 61  --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVAKLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V                           AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVAST--------SGKEEKTYEKLEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|283456064|ref|YP_003360628.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1]
 gi|283102698|gb|ADB09804.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1]
          Length = 168

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 15/170 (8%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101
           G    ++   ++ QD I LFGFL+   ++ F+ LQ V G+G +VA+ +LS +    L  +
Sbjct: 4   GQEVKVYTSLNVSQDAITLFGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHA 63

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161
           +   ++  +A+ PG+  K A +I+ ELKG           D+S +    + I        
Sbjct: 64  VADGDATALAKAPGLGKKGAQKIILELKG---------SIDLSQIETAASVISRPEDTGS 114

Query: 162 N-AISALVNLGYGQDQATTAVVSVLKKEK-----NIADDSQIIRLALRAI 205
              +  L++LG+ Q  A  AV  V +        +  D  ++++LAL ++
Sbjct: 115 EQVVEGLISLGWRQQDALHAVQEVCRSNDIATPLSNEDVPRVLKLALTSL 164


>gi|225851116|ref|YP_002731350.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1]
 gi|225645836|gb|ACO04022.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1]
          Length = 179

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 30/206 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+   +D  +ID+  V      P         + D   +F+E  ++ D++ L
Sbjct: 1   MIEFLKGKIKHKKDDIYIIDLGTVALRFRSPS-------DLKDQSVVFIEMFIKDDRVEL 53

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L S+ GVG + A+ +L   +     E +  ++   +    G+  K 
Sbjct: 54  YGFKTPEEREIFNRLLSINGVGVKHALSILRSFSPERFFEIVENRDITTLTTAQGVGKKT 113

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+GK   + + + +D+                    + AL  LG+ + +  + 
Sbjct: 114 AQRIVLELQGKLDFIENELLKDL--------------------VDALTGLGFDKKRVLSV 153

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              VLK+  N+    + ++LAL+ ++
Sbjct: 154 AKDVLKETDNL---EKALKLALQKLA 176


>gi|257452123|ref|ZP_05617422.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R]
 gi|317058668|ref|ZP_07923153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R]
 gi|313684344|gb|EFS21179.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R]
          Length = 193

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 97/205 (47%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +     +Y  ++V G+ Y +Y  +R    + ++G    +++  H+R+++ +L
Sbjct: 1   MFEYLEGIVAYKKPEYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R+ F LL SV+G+G  +A+  LS     +LV  I  +    + +IP +  K 
Sbjct: 60  IGFLEEKERKLFELLLSVKGIGVSLALAALSTYPVEQLVAYIQEEKVGQLKKIPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +++ K                +++    S  ++A +  SAL NLGY + +    
Sbjct: 120 AQQIILDIQSKLKHFG----------VEQRFVEDSSMAWAEDIASALENLGYAKKEVEHL 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +         + ++  L+ +
Sbjct: 170 LQH--ENWTEYQSLEEAMKAILKKM 192


>gi|134093539|ref|YP_001098614.1| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans]
          Length = 161

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 16/175 (9%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L  +G+   L     +R+D   LFGF +  +R  F  L  + G+GAR A+ +LS
Sbjct: 1   MSTFYNLPGLGEKVALLTHLTVREDAHILFGFGTAEERNVFKQLVKITGIGARTALSILS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  +L  +I LQ +  + +IPGI  K A R              +  +     +   A
Sbjct: 61  GMSVADLSNAITLQEAGRLTKIPGIGKKTAER------------LLLELKGKLGADLGAA 108

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                     + ++AL+ LGY   +A  A+  V          S  I+LAL+A+S
Sbjct: 109 GGVIHSDATSDILNALLALGYSDKEALLAMKQV----PAGTGVSDGIKLALKALS 159


>gi|33240204|ref|NP_875146.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|44888420|sp|Q7VCI6|RUVA_PROMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33237731|gb|AAP99798.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 222

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  + G    ++E+     VLI   GV Y +    R+L  L    +   L+V    R+D
Sbjct: 1   MISWLNGLKIEIWENGTRKGVLISCSGVGYEVQLLSRSLQLLNTSKELI-LWVHEVHRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
             +L GFL+ L+R  F  L SV GVG ++A+ +L +  A +L+ +I  +    +   PG+
Sbjct: 60  GSQLIGFLNKLERDLFRKLISVSGVGPQLAISLLEKNPAEQLISAITKKKIAQLTSCPGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R++ EL+ K   LS ++   +   N     +    + A    S L+NL Y   +
Sbjct: 120 GKKTAERLVIELQNK---LSDLIGSSLKKTNN-HLELEYETNVADEVRSTLLNLDYKNSE 175

Query: 177 ATTAVVSVLKKEKNIADDSQ 196
              A +      K+I   +Q
Sbjct: 176 IEKAFLEFETSSKSIRSKAQ 195


>gi|302872058|ref|YP_003840694.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574917|gb|ADL42708.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 197

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ ++ +Y++++   +   I+C     S    +G    ++V     ++   L
Sbjct: 1   MIDSIMGTIQEVFSNYIILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 61  --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V                           AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVAATT--------GKEEKTYEKLEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S    + +       I+LAL+ +S
Sbjct: 171 QVLSS---GDFSELSLEDGIKLALKKLS 195


>gi|257466083|ref|ZP_05630394.1| Holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917239|ref|ZP_07913479.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691114|gb|EFS27949.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 193

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 100/207 (48%), Gaps = 17/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +     +Y  ++V G+ Y +Y  +R    + ++G    +++  H+R+++ +L
Sbjct: 1   MFEYLEGIVAYKKPEYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R+ F LL SV+G+G  +A+  LS     +LV  I  +    + +IP +  K 
Sbjct: 60  IGFLEEKERKLFELLLSVKGIGVSLALAALSTYPVEQLVAYIQEEKVGQLKKIPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +++ K                +++    S  ++A +  SAL NLGY + +    
Sbjct: 120 AQQIILDIQSKLKHFG----------VEQRLVEDSSMAWAEDIASALENLGYAKKE---- 165

Query: 181 VVSVLKKEK--NIADDSQIIRLALRAI 205
           V  +L+ E         + ++  L+ +
Sbjct: 166 VEHLLQHENWIEYQSLEEAMKAILKKM 192


>gi|312134958|ref|YP_004002296.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           owensensis OL]
 gi|311775009|gb|ADQ04496.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           owensensis OL]
          Length = 197

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++   L
Sbjct: 1   MIDSIVGTIQEVFSNYVILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 61  --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +L+ I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILASIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V                           AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVAATT--------GKEEKTYEKLEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S    + +       I+LAL+ +S
Sbjct: 171 QVLSS---GDFSELSLEDGIKLALKKLS 195


>gi|314923584|gb|EFS87415.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL001PA1]
 gi|314966629|gb|EFT10728.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL082PA2]
 gi|314981358|gb|EFT25452.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL110PA3]
 gi|315092024|gb|EFT64000.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL110PA4]
 gi|315092849|gb|EFT64825.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL060PA1]
 gi|315103631|gb|EFT75607.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL050PA2]
 gi|315105680|gb|EFT77656.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL030PA1]
 gi|327327453|gb|EGE69229.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL103PA1]
          Length = 158

 Score =  157 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105
           +L     +R++ + L+GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  +
Sbjct: 2   SLHTSLVVREESLTLYGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEE 61

Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
           +   + ++PGI  K A++++ ELK K  +L+          +           +      
Sbjct: 62  DDATLCRVPGIGRKGAAKMILELKDKVAALAPRGASASGATH-------VAAPWREQVAE 114

Query: 166 ALVNLGYGQDQATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206
            LV LG+    A  AV  V  LK+         ++R ALR+++
Sbjct: 115 GLVGLGWSTKDAEKAVDKVVALKEADPAMSIGNLMRAALRSLA 157


>gi|167770542|ref|ZP_02442595.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM
           17241]
 gi|167667137|gb|EDS11267.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM
           17241]
          Length = 172

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 13/179 (7%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
             + TLSCL  +G   TL+   ++R+D + L+GF +  +   F +L  V GVG + A+ +
Sbjct: 2   TTLTTLSCLPPVGGEATLYTHLNVREDALDLYGFYTQAELNAFKMLIGVSGVGPKSALAI 61

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS--LSSVVQQDMSCVN 147
           LS +T  +L   I   +SK +   PGI  K A RI+ E K +  +  LS  + +  S + 
Sbjct: 62  LSDMTPDKLALCIAAGDSKSLRAAPGIGPKAAQRIILECKDRIGASELSGEMSEVASQLR 121

Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            E  ++    S            GY   +A       L           +I+  L+A+S
Sbjct: 122 HETTNMSEAASALAAL-------GYSPTEA----AQALAGLAADMPVEDMIKHGLKALS 169


>gi|325295513|ref|YP_004282027.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065961|gb|ADY73968.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 188

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFV-ETHMRQDQIR 59
           MI  +KG +   Y D + +    + + ++ P+  L+ + + GD   LFV  T   +    
Sbjct: 1   MIDYLKGKVIFKYSDSISLLCGSIAFRVFVPLNLLTEI-REGDKVALFVKFTLPSEGTPS 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R +F  L  +  VG++VAM V+S  +  EL   +  ++ K ++ +PG+  K
Sbjct: 60  LYGFKTREERVFFEELLKIPKVGSKVAMSVISHFSLDELRNIVSTKDVKTLSTVPGLGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           ++ R++ ELK K I                        +     +  L  L Y + +   
Sbjct: 120 LSERVILELKDKPI-------------------FGEERNIPSELLEILTALSYSRKEVVK 160

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  +  K+++I    ++++  ++ +S
Sbjct: 161 AVEGIDLKDRSI---EELVKEVVKKLS 184


>gi|330836553|ref|YP_004411194.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta
           coccoides DSM 17374]
 gi|329748456|gb|AEC01812.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta
           coccoides DSM 17374]
          Length = 209

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 12/197 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL----GKIGDFCTLFVETHMRQD 56
           MI  + G +  +     ++    + + I    +T S L     +      L      R+D
Sbjct: 1   MIHALTGILVSVTAHQAVLACGHMEFEIIISAQTASTLSQLSPEKRQHVRLLTYLQHRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + LFGFLS+ +R  F  LQ+V G+GA+ A+ +L  ++   L+ ++   + K +++IPG+
Sbjct: 61  AMVLFGFLSEQERIVFEQLQTVPGIGAKQAVKILGGMSLVTLLTALDQGDVKTLSRIPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R++  L+G  +                +A   S      +   AL  +GY + +
Sbjct: 121 GSKTAQRLILALRGTLVLEDD--------ATPGKAPSPSATGRWTDLSEALQEMGYDRKK 172

Query: 177 ATTAVVSVLKKEKNIAD 193
               +  + K+ ++   
Sbjct: 173 VMEILARLEKEHESEMS 189


>gi|312969902|ref|ZP_07784085.1| ruvA N terminal domain protein [Escherichia coli 1827-70]
 gi|310338187|gb|EFQ03276.1| ruvA N terminal domain protein [Escherichia coli 1827-70]
          Length = 107

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 54/102 (52%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           LI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L  
Sbjct: 2   LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
             GVG ++A+ +LS ++A + V ++  +    + ++PGI  K
Sbjct: 62  TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 103


>gi|302338526|ref|YP_003803732.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM
           11293]
 gi|301635711|gb|ADK81138.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM
           11293]
          Length = 202

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 83/214 (38%), Gaps = 19/214 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I G     + +    + + +              +   + V    R+D + L
Sbjct: 1   MIESLTGTITGRQGTVLFLSTGAIEWALEATSSAAMKFASSKETVQIPVHLIHREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F S  +R  F  L  V G+G + A+ +LS + A   + ++  ++  +++ IPG+  K 
Sbjct: 61  FAFASKKERNLFRELLKVSGIGPKQAVRILSGMEADRFIAALENEDVDLLSSIPGVGKKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+  L+GK        +     +                 + AL  +G+ +  A  A
Sbjct: 121 AGKIILALRGKLTPAEEEGEAGDESL------------PFKELVEALNGMGFDRKLAEKA 168

Query: 181 VVSVLKKEKN-------IADDSQIIRLALRAISC 207
           + + L + +           + ++ R A+  +S 
Sbjct: 169 LKAALNELEPERFEHDHEKLERELFRAAIVRLSS 202


>gi|239618103|ref|YP_002941425.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|259495648|sp|C5CFS3|RUVA_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239506934|gb|ACR80421.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 195

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59
           MI  ++G I  +  + V +        I C   T+  L  +     L        D    
Sbjct: 1   MIKGVEGEITEISGNEVTLKAGQFYLNILCSTNTIKEL-SLSAKVHLLTYLSFSADRAPE 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++GF    +   F++L     +G ++A+ +LS  +   L + I  ++   ++++PG+  K
Sbjct: 60  IYGFKDRAEYNVFLMLLKANKIGPKMALKILSATSPEMLQKMIASKDISGLSRLPGLGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R+++EL       +    +++S V+              +A+ AL  LG+    A  
Sbjct: 120 TAERLVSELYDLVKDYAVEFPKELSDVS-------------EDAVGALTALGFDMTSAKL 166

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  VLK E+ + +  +++R ALR ++
Sbjct: 167 AVNEVLK-EQTVENTQELVRKALRKLN 192


>gi|312880160|ref|ZP_07739960.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM
           12260]
 gi|310783451|gb|EFQ23849.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM
           12260]
          Length = 198

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 11/196 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +  + IDV G    ++   RT+    + G    L  +  +      L
Sbjct: 1   MIRSLSGVVESARDGALWIDVNGFGLEVFAS-RTVLEQAEEGHPLRLLAQLILTDSGPSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F  L  V+ +G R+AM +L   +  ELV +I  Q+   + + PG+  K 
Sbjct: 60  YGFGGEEERRLFQELIQVKNIGGRMAMALLRVFSVAELVAAIRAQDVASLGRAPGVGAKR 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+ K   L      +   +      +            AL  LG+ +  A +A
Sbjct: 120 AERICFELRPKLDRLFGTAAGETGPLEAGVESLA----------DALEGLGFSRSTARSA 169

Query: 181 VVSVLKKEKNIADDSQ 196
           +    +  +      +
Sbjct: 170 LEEARRSLEGEEPAEE 185


>gi|237751366|ref|ZP_04581846.1| holliday junction DNA helicase motor protein [Helicobacter bilis
           ATCC 43879]
 gi|229372732|gb|EEO23123.1| holliday junction DNA helicase motor protein [Helicobacter bilis
           ATCC 43879]
          Length = 189

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KGNIE L    V ++V GV Y++   + T + L +     TL +   +R+D   L
Sbjct: 1   MIVRLKGNIEKLLPTGVELEVSGVTYMVEISLLTSAAL-QNKTHVTLEIAEIIREDSHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+ L  V GVGA++A+ +LS  +  + +  +   N   +  + GI  K+
Sbjct: 60  YGFETRREREVFLQLLKVNGVGAKIALMILSSYSVEQFLAIVQTNNLAALKGVKGIGTKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM EL G                   Q+           A  ALV LG+   Q T A
Sbjct: 120 AGKIMLELAG-----------------YTQSIQTPNNVNVQLAHEALVALGFKDTQITQA 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L  E      + +++  L+ +
Sbjct: 163 LQG-LSNEILQMPPNDMVKAILQTL 186


>gi|149175963|ref|ZP_01854580.1| probable holliday junction DNA helicase ruvA [Planctomyces maris
           DSM 8797]
 gi|148845117|gb|EDL59463.1| probable holliday junction DNA helicase ruvA [Planctomyces maris
           DSM 8797]
          Length = 206

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58
           MI  I+G +  L     +I V    Y ++ P      L   IG   +L    ++  +   
Sbjct: 1   MITNIRGELIELSLTEAIISVGAFDYEVFIPEFVRRQLQPLIGSEISLKTIQYIEGNPQK 60

Query: 59  -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                RL GF+S  +R++F L+ SV GVG +  +  + R    E+  +I  ++ K +  +
Sbjct: 61  GRLTPRLIGFMSHAEREFFELVCSVDGVGVKKTLRAMVR-PVKEVATAIEEKDIKQLTTL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI   +A RI+ +L+ K    + +V ++                    A  AL++LGY 
Sbjct: 120 PGIGPAVAERIVAKLRRKMTKFALIVAKEFPAEE-------GHTDVFSEAYEALLSLGYS 172

Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198
             +A T V ++  + K      + +
Sbjct: 173 ATEARTKVETIAAEGKKFKSIEEFL 197


>gi|222823639|ref|YP_002575213.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter
           lari RM2100]
 gi|254766949|sp|B9KFX7|RUVA_CAMLR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222538861|gb|ACM63962.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter
           lari RM2100]
          Length = 183

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 25/207 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +      +V++    GV Y +Y  +       K      L +   +++D  +
Sbjct: 1   MIVAIEGIVSKKEPTFVVLKTSSGVSYGVYVSLFCSGNFEK-DQKIELSITQIIKEDSHK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F LL  + G+GA  AM + S +       ++   +  V  ++PGI  K
Sbjct: 60  LYGFLDTNEQRMFELLIKISGIGATTAMALCSSLDTNTFYTALQSGDESVFKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    I++ +  Q     +    +                   G+ Q+    
Sbjct: 120 SAKRIIAELSDAKINIENSNQDHAQALAALLSL------------------GFKQENILK 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +         + S++I+ AL+ ++
Sbjct: 162 VLRT-----CESQNTSELIKEALKKLA 183


>gi|297518838|ref|ZP_06937224.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50]
          Length = 101

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 53/101 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y +  P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V +
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNA 101


>gi|325971233|ref|YP_004247424.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp.
           Buddy]
 gi|324026471|gb|ADY13230.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp.
           Buddy]
          Length = 210

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 107/216 (49%), Gaps = 18/216 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG----KIGDFCTLFVETHMRQD 56
           MI  I G++  + +  V++    V Y++    +T S L     +      L      R+D
Sbjct: 1   MINAIIGDVVRVMDGEVILRAGYVEYMLSVSAQTASKLSNLSLEERRAVRLLTVLIHRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + LFGF  + +R+ F+ LQ+V G+G++ A+ +LS I+   L +++   N K+++ IPGI
Sbjct: 61  SMSLFGFYDEAEREAFLQLQTVSGIGSKQALKILSGISVRNLAQALDTGNLKLLSSIPGI 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K   +++  L+        V + + S  N +++   S  S   + I+ALV++GY + +
Sbjct: 121 GPKTGQKMILALRD-----VLVFEDEKSKTNGQRSQ--SKASQWSDIITALVDMGYDRRK 173

Query: 177 ATTAVVSVLKKEKNIA------DDSQII-RLALRAI 205
               + S+ ++E          D  Q++ R A++ +
Sbjct: 174 VEEVIDSLSEQESEAIGKLSHHDAEQLLFRSAVKLL 209


>gi|296504911|ref|YP_003666611.1| Holliday junction DNA helicase motor [Bacillus thuringiensis
           BMB171]
 gi|296325963|gb|ADH08891.1| Holliday junction DNA helicase motor [Bacillus thuringiensis
           BMB171]
          Length = 150

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + L+GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+ 
Sbjct: 1   MALYGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVG 60

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + 
Sbjct: 61  KKTARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREV 120

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +LK+        Q I+ AL  +
Sbjct: 121 SRVVPELLKE---SLTTDQYIKKALSLL 145


>gi|126696254|ref|YP_001091140.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9301]
 gi|166230582|sp|A3PCR4|RUVA_PROM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126543297|gb|ABO17539.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9301]
          Length = 225

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 112/218 (51%), Gaps = 15/218 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53
           MI  I G++  L++     +VLI+ QG+ Y I         L K        TL+V+   
Sbjct: 1   MISWINGDLVDLWQTNQKFFVLINCQGLGYEIQILESFFLKLRKNQISTKNITLWVKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S+  + +F+ + S++GVG+++ +G+L++ + +E++ +I  Q+ K+I  +
Sbjct: 61  KEDSDLLFGFTSNEQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLICSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K    S ++ ++     + +     +     +    L +L Y 
Sbjct: 121 PGIGQKMSERLILELKSKFK--SEILSEEEKSKGELEIKDPEINKMIEDLQLTLQSLSYK 178

Query: 174 QDQATTAVVSVLK------KEKNIADDSQIIRLALRAI 205
             +    +  ++K      K++N     ++++LA+R +
Sbjct: 179 NKEINNILPIIIKEIDLLGKKENNLSFEKLLKLAMRYL 216


>gi|237755451|ref|ZP_04584075.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692383|gb|EEP61367.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 179

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 33/204 (16%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I    +++++I+  G   ++  P        +      ++    +RQ+ ++L
Sbjct: 1   MFDYIKGKITKKGKNHIVIEKLGFGLLVEVPDS------EKFKENIVYTYLLVRQEDVKL 54

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S+ +R  F+ L  + GVG + A+ ++S  +  E +E I   +   + +I GI  K 
Sbjct: 55  LGFVSEEERDLFLKLIQIHGVGVKHALSIISNFSVEEFIEIIENGDVDKLTEIQGIGNKT 114

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK                       S        +SALVNLGY + ++   
Sbjct: 115 AQRIIVELKGKI--------------------EFSESDELNQLVSALVNLGYDKKESVKV 154

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
              VLK+ K+       I+ AL+ 
Sbjct: 155 AKKVLKETKD-------IKEALKK 171


>gi|315638160|ref|ZP_07893342.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           upsaliensis JV21]
 gi|315481696|gb|EFU72318.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           upsaliensis JV21]
          Length = 183

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 25/207 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      + ++    GV Y IY  +   + L ++   C L +   +++D  +
Sbjct: 1   MVVAIEGIITKKEPTFAVLKTQNGVSYGIYISLFCAAKL-ELHTKCELLITQIIKEDSHK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F +L  V G+GA  AM + S + +    +++ L +  V  ++PGI  K
Sbjct: 60  LYGFLEKDEQKIFEMLLKVNGIGATTAMAICSSLDSNAFYKALSLNDESVFKKVPGIGAK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    ++ ++V       +    +                   G+ QD+   
Sbjct: 120 SAKRIIVELSDSKMAFNNVSDDKAQALAALLSL------------------GFKQDK--- 158

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            ++S+L       D S++I+ AL+ ++
Sbjct: 159 -ILSILAT-CEAKDTSELIKEALKKLA 183


>gi|50954747|ref|YP_062035.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|71649473|sp|Q6AFB5|RUVA_LEIXX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|50951229|gb|AAT88930.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 207

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 8/195 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +        +IDV GV + +         L ++GD   +     +R+D ++L
Sbjct: 1   MISSLRGTVLSASGGAAVIDVGGVGFAVQLTPDHARSL-RVGDEAFVHTTLIVREDSLQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF      Q F LL  V GVG + A+ VLS ++  ++ +++   +      + GI  K 
Sbjct: 60  FGFSGLEQLQVFELLNGVSGVGPKSAISVLSVLSPDQVADAVAAADDAPFRAVSGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+  L GK  +                    +  S + + + ALV LG+ +  A  A
Sbjct: 120 AKLIVVSLTGKLAACRR-------PSAPSARRPSAPSSVSDSVLVALVGLGWPEKVAGEA 172

Query: 181 VVSVLKKEKNIADDS 195
           V  V+        DS
Sbjct: 173 VAEVIAGTAESERDS 187


>gi|282852794|ref|ZP_06262136.1| holliday junction DNA helicase RuvA, N-terminal domain protein
           [Lactobacillus gasseri 224-1]
 gi|282556536|gb|EFB62156.1| holliday junction DNA helicase RuvA, N-terminal domain protein
           [Lactobacillus gasseri 224-1]
          Length = 122

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV++DV G+ Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+    
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGK-- 115

Query: 121 ASRIMTEL 128
             R++  L
Sbjct: 116 --RLLLRL 121


>gi|158522217|ref|YP_001530087.1| DNA recombination protein RuvA [Desulfococcus oleovorans Hxd3]
 gi|254766957|sp|A8ZUH8|RUVA_DESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158511043|gb|ABW68010.1| DNA recombination protein RuvA domain I [Desulfococcus oleovorans
           Hxd3]
          Length = 205

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58
           MIG ++G +    ED +L+    V Y +  P   ++ L   + GD     +  +  + Q 
Sbjct: 1   MIGYLEGTLLKKKEDRILLLAGPVGYEVLLPAVVMASLQGKREGDPLFFHIYHYQTERQP 60

Query: 59  R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           +  L GF ++ ++ +F LL +V+ +G   A+  L  +   E+ E+I   NS ++ Q+ G+
Sbjct: 61  KPVLIGFNTEEEKDFFHLLITVEAIGPLKAVQCL-TLPIGEVAEAIETGNSALLGQLKGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175
             + A +++  LKGK    +          +     +    S A   +  LV  LGY  +
Sbjct: 120 GGRTAQKMIATLKGKVGRFAD-------AGHSSAPDVPVTGSLADQTVEVLVGQLGYKPN 172

Query: 176 QATTAVVSVLKKEKNIADDSQI 197
           +A   V   LK+  +++    +
Sbjct: 173 EARLMVAGALKRNPDVSTPEAL 194


>gi|57242124|ref|ZP_00370064.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis
           RM3195]
 gi|57017316|gb|EAL54097.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis
           RM3195]
          Length = 183

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 25/207 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      + ++    GV Y IY  +   + L ++   C L +   +++D  +
Sbjct: 1   MVVAIEGIITKKEPTFAVLKTQNGVSYGIYISLFCAAKL-ELHTKCELLITQIIKEDSHK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F +L  V G+GA  AM + S + +    +++ L +  V  ++PGI  K
Sbjct: 60  LYGFLEKDEQKIFEMLLKVNGIGATTAMTICSSLDSNAFYKALSLNDESVFKKVPGIGAK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL     + ++V       +    +                   G+ QD+  +
Sbjct: 120 SAKRIIVELADAKTAFNNVSDDKAQALAALLSL------------------GFKQDKILS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +   K     D S++I+ AL+ ++
Sbjct: 162 VLATCEAK-----DTSELIKEALKKLA 183


>gi|116327800|ref|YP_797520.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331541|ref|YP_801259.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122280714|sp|Q04RG9|RUVA_LEPBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122284404|sp|Q053A8|RUVA_LEPBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116120544|gb|ABJ78587.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125230|gb|ABJ76501.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 212

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 9/213 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQI 58
           MI  +KG ++ L   Y  I+  G+ Y +    +T   L  +   +     +   M +   
Sbjct: 1   MISGLKGTLKKLEVGYAHIETGGITYEVTISFKTYLELKSLPSHNEVQFQIFHAMNERGQ 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +LFGFL++ D+++F +++ +QG+G   A+ +LS  +A EL        +K + +IP +  
Sbjct: 61  KLFGFLTEQDKEFFKVIKGLQGIGELTALKILSFFSAEELYRIAQSGEAKELEKIPKVKG 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVN------KEQAHICSMPSFAINAISALVNLGY 172
           K + +I  E+K     L   +       +       E     ++      AI  LV LG+
Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGTSKEPSISLSSFSETPEEAALSRKREIAILGLVQLGF 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +  A+  V  +LK   +  D  +IIR  L+++
Sbjct: 181 EEKTASKEVDKILKSS-SPTDPGEIIREILKSL 212


>gi|291296179|ref|YP_003507577.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279]
 gi|290471138|gb|ADD28557.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279]
          Length = 193

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  +KG +       V++ V GV     CP  TL+ L + G    L  +  +R+D + L
Sbjct: 1   MVRYLKGTVLKKSPSSVVLLVGGVGLEASCPASTLAQLSE-GQEAALHTKLVVREDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  +   + F LL SV GVG +VA+ +LS  T   L  ++   + +++    G+  K+
Sbjct: 60  FGFADERSLELFELLLSVSGVGPKVALNLLSSQTPALLARALAEGDLRLLTAAQGVGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+GK  +               +       S    A  AL+ LG+ + Q  + 
Sbjct: 120 AERIALELRGKVPAHLM-----------GEGGRLVHSSQTEEAELALITLGFREGQVRSI 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + +K    A   ++I+LAL+A+
Sbjct: 169 VAEIAQKNPG-AGTQELIKLALKAL 192


>gi|123968451|ref|YP_001009309.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. AS9601]
 gi|166230584|sp|A2BQZ1|RUVA_PROMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123198561|gb|ABM70202.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. AS9601]
          Length = 225

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 111/218 (50%), Gaps = 15/218 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53
           MI  I G++  L++     +VLI+ QG+ Y I         L          TL+++   
Sbjct: 1   MISWINGDLVDLWQTNQKSFVLINCQGLGYEIQILESFFLKLKTNQISTKNITLWIKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S   + +F+ + S++GVG+++ +G+L++ + +E++ +I  Q+ K+I  +
Sbjct: 61  KEDSDLLFGFTSKDQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLICSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K    S ++ ++    ++ +     +     +    L +L Y 
Sbjct: 121 PGIGQKMSERLILELKSKFK--SEILSEEEKSKDEFEIKDPEIIKMIEDLQLTLQSLSYK 178

Query: 174 QDQATTAVVSVLK------KEKNIADDSQIIRLALRAI 205
             +  T +  ++K      K++N     ++++LA+  +
Sbjct: 179 NKEINTILPIIIKEIDHLGKKENSLSFEKLLKLAMHYL 216


>gi|187917906|ref|YP_001883469.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH]
 gi|229560005|sp|B2S1L2|RUVA_BORHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119860754|gb|AAX16549.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH]
          Length = 196

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  ++I      + +       + L ++ +   +    H+R+D+I+L
Sbjct: 1   MINKIYGKIIEKRESSIVIVALPFEFEVLVSSFCNAEL-RLLEDVEILTYLHLREDEIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L SV G+G R A+ +LS +   E  ++I  ++ K I+ + GI  K+
Sbjct: 60  FGFLNVSEREVFEELISVDGIGPRAALRMLSGMKYDEFRDAIEREDVKRISTVKGIGNKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +L+GK +    +        + EQ+                VN+G+ +     A
Sbjct: 120 AGKIFLKLRGKLVKADELTSSVFKFKDLEQSI---------------VNMGFDRKLVVAA 164

Query: 181 VVSVL--KKEKNIADDSQ---IIRLALRAIS 206
           +  ++   +   + +  Q   + R  L+ +S
Sbjct: 165 IKEIMLIDEFLMLREVEQEQFLFRETLKRLS 195


>gi|311894864|dbj|BAJ27272.1| putative Holliday junction ATP-dependent DNA helicase RuvA
           [Kitasatospora setae KM-6054]
          Length = 203

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88
            C   TL+ L ++G+   L     +R+D + LFGF+ D +R  F +LQ+  GVG ++A  
Sbjct: 29  QCTPATLATL-RVGETARLATSLVVREDSLTLFGFVDDDERATFEVLQAAPGVGPKLAQA 87

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
           +L   +   L  +I   + K +  +PGI    A++++ E K K  +    V         
Sbjct: 88  ILGTHSPEALRVAIAGGDEKALIAVPGIGKAKAAKLLLEYKDKLGAPHGSVPA------- 140

Query: 149 EQAHICSMPSFAINAI-SALVNLGYGQDQATTAVVSVLKKEK 189
            Q  + + P+     + +ALV LGY   +A  AV  V  + +
Sbjct: 141 -QKPVAAGPAPWHEQLHAALVGLGYAPREAEEAVARVTPEAE 181


>gi|78779241|ref|YP_397353.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus
           marinus str. MIT 9312]
 gi|123727890|sp|Q31B28|RUVA_PROM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78712740|gb|ABB49917.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus
           marinus str. MIT 9312]
          Length = 225

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 106/215 (49%), Gaps = 17/215 (7%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGK---IGDFCTLFVETHM 53
           MI  I G +  L++     ++LI+ QG+ Y I         L          TL+++   
Sbjct: 1   MISWISGELVELWQTNQKFFLLINCQGLGYEIQVLESLFLKLKTNQITNKNITLWIKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S   + +F+ + +++GVG+++ MG+LS+ + +E++ +I  QN K+I  +
Sbjct: 61  KEDSDLLFGFSSKDQKNFFIEILNIRGVGSQIGMGILSKFSISEVINAINTQNKKLICSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K    + +  Q+    ++       +     +    L +L Y 
Sbjct: 121 PGIGQKMSERLILELKSKFR--NELKIQEEKSKDEFHIKDNKINKIVSDIELTLKSLNYT 178

Query: 174 QDQ-------ATTAVVSVLKKEKNIADDSQIIRLA 201
           +++        +  + S+ KKEK+      ++ LA
Sbjct: 179 KNEIKSILPIISKEIDSLTKKEKD-TSFENLLMLA 212


>gi|254525561|ref|ZP_05137613.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536985|gb|EEE39438.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9202]
          Length = 225

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 106/218 (48%), Gaps = 15/218 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKI---GDFCTLFVETHM 53
           MI  I G +  +++     +VLI+ QG+ Y I         L          TL+++   
Sbjct: 1   MISWINGELVEIWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKNITLWIKYIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S   + +F+ + SV+G+G+++ M +L++ + +E++++I  Q+ K+I  +
Sbjct: 61  KEDSDLLFGFASKDQKFFFIEILSVRGIGSQIGMSILNKFSISEIIKAIKTQDKKLICSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K    S V  ++     + +     +     +    L +L Y 
Sbjct: 121 PGIGQKMSDRLILELKSKFK--SKVQIEEEKGQEEFEITNPEINKLMDDLQLTLQSLNYK 178

Query: 174 QDQATTAVVSVLK------KEKNIADDSQIIRLALRAI 205
             +  T +  ++K      K++       +++LA+  +
Sbjct: 179 NKEIKTILPFLIKELGLHTKKEKNLSFENLLKLAMNHL 216


>gi|33861499|ref|NP_893060.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|44888410|sp|Q7V1D3|RUVA_PROMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33634076|emb|CAE19401.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 219

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 98/214 (45%), Gaps = 15/214 (7%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53
           MI  IKG +   ++     Y+L++ QG+ Y I         +           L+++   
Sbjct: 1   MISWIKGELVSSWQANNKFYILVNCQGLGYEIQTLESVFFDINSNKISEKEIILWLKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF +   R +F+ + +++G+G+++ M +L++ +  +L+ +I   + K I+ +
Sbjct: 61  KEDSDMLFGFSTKDQRDFFIQILNIKGIGSQIGMSLLNKFSLNQLITAISNNDKKSISTV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            GI  K+  RI+ ELK K   ++  ++++   +N        + S   +    L +L Y 
Sbjct: 121 QGIGQKMTERIILELKSKV--INKEIEKENLNINNFLEKNKDLDSIFKDIDLTLQSLNYS 178

Query: 174 QDQAT----TAVVSVLKK--EKNIADDSQIIRLA 201
           + +        + ++     EK       +++ A
Sbjct: 179 KKEIKNLFPKLINNIKNSSLEKESISFENLLKEA 212


>gi|88856266|ref|ZP_01130926.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
 gi|88814585|gb|EAR24447.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
          Length = 205

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIY-CPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +       ++I+V GV   +   P   LS   ++G    L     +R+D + 
Sbjct: 1   MISSLRGTVLAAVGTSIVIEVGGVGLSVSVIPEHALS--VRVGAETQLNTVLIVREDDLS 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +   F LL+ V GVG + AMGVL+ +T  ++  ++  +N     ++ GI  K
Sbjct: 59  LYGFRTREELDVFALLRGVTGVGPKSAMGVLAALTPDDIARAVAEENDSAFRKVTGIGPK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD--QA 177
            A  I+  L GK    +     D          +            AL  LG+ +   + 
Sbjct: 119 TAKLIVLNLTGKLEVSALKRGPDSVAATPISESVS----------MALQGLGWSEKLARP 168

Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202
                     E    +   I+R AL
Sbjct: 169 AAEAAFAEASEAEKENTQAILRRAL 193


>gi|119952829|ref|YP_945038.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135]
 gi|254766946|sp|A1QYH6|RUVA_BORT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119861600|gb|AAX17368.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135]
          Length = 196

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  ++I      + I       + LG + +   +    H+R+D+IRL
Sbjct: 1   MINKICGKIVEKRESSIVIVALPFEFEILVSSFCNAELG-LQEDVEILTYLHLREDEIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L SV G+G + A+ +LS I   E  +++  ++ K+I+ + GI  K+
Sbjct: 60  FGFLNVSEREVFEKLISVDGIGPKAALRILSGIKYNEFRDAVEREDVKLISNVKGIGNKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +L+GK + ++      +     EQ+                VN+G+ +     A
Sbjct: 120 AGKIFLKLRGKLVKVNEASSGVLKFKELEQSI---------------VNMGFDRKLVAAA 164

Query: 181 VVSVLKKEKNIA----DDSQ-IIRLALRAIS 206
           +  ++  ++ +     D  Q + R  LR +S
Sbjct: 165 IKEIMLIDEFLMLRQVDQEQFLFREILRKLS 195


>gi|194246569|ref|YP_002004208.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus
           Phytoplasma mali]
 gi|254767381|sp|B3R0J1|RUVA_PHYMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193806926|emb|CAP18355.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus
           Phytoplasma mali]
          Length = 186

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 91/202 (45%), Gaps = 20/202 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +    +++V++D   + Y I         + K       FV  H++++   L
Sbjct: 1   MYSYIKGKVVNNGQNFVIVDNNNIGYHIIVSNPYFYEINK---EYKFFVHFHIKENLQIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +  +F  L  V  +G + A+ +       ++ ++I   ++  + + PGI +K 
Sbjct: 58  YGFNDNKNLLFFKKLLDVPTIGPKSALMLSETDNLEQVFQAIENNDNVYLRKFPGIGIKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKG       ++  +   +N ++  +  +          L+NLG+ + +  + 
Sbjct: 118 AQQIILKLKG------DLIFSEKIILNPKKTELEKI----------LLNLGFVKKEIKSV 161

Query: 181 VVSV-LKKEKNIADDSQIIRLA 201
           +  +  KKE  +     +++LA
Sbjct: 162 LNQIDDKKELELMLKEVLLKLA 183


>gi|319790481|ref|YP_004152114.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans
           HB-1]
 gi|317114983|gb|ADU97473.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans
           HB-1]
          Length = 190

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 27/207 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59
           M+  + G + G  +  V +        +  P R L  L + G   TL+ E    Q+   +
Sbjct: 1   MVEAVSGTVSGKGDGAVFLSCGCFTLRLLVPERLLPELHE-GTHVTLYTELLFPQEGAPQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +R+ F  L  V  VG+R+A+ VLS  +  E V+ +  ++ + ++++PG+  K
Sbjct: 60  LFGFKTREERELFRQLMKVPKVGSRLALAVLSVFSPEEFVKVLEGEDVEALSKVPGLGRK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           ++ R++TELKGK +S                                L  LGY   +   
Sbjct: 120 LSRRLITELKGKLVS----------------------GEVPREVKEVLRRLGYTTAEINE 157

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  +           + ++ AL+ +S
Sbjct: 158 ALKGL---NLTGVGVEEAVKEALKRLS 181


>gi|284044634|ref|YP_003394974.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684]
 gi|283948855|gb|ADB51599.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684]
          Length = 198

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 14/178 (7%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y +     TL  +   G   TL     +R D ++L+GF ++ +R  F++L  VQ VG +V
Sbjct: 31  YRLAVSSETLKQVPAAGKRVTLHSHLIVRDDALQLYGFATEEERDLFLMLLGVQSVGPKV 90

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
           A+ VLS  T  EL+ ++   ++     +PGI  + A RI+ EL+ KA          ++ 
Sbjct: 91  ALAVLSGGTPRELLGALAAGDAARFQAVPGIGKRTAERIIVELREKA---------GVAV 141

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
            +       +       A   LV LG+  D+A   +              ++I  ALR
Sbjct: 142 PDDAVHGSVASDDPRTLAREGLVGLGFSLDEAERLLKRA-----PGETAEELIAHALR 194


>gi|213420857|ref|ZP_03353923.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 106

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L+
Sbjct: 9   IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLY 68

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           GF +  +R  F  L    GVG ++A+ +LS ++A + V
Sbjct: 69  GFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFV 106


>gi|188997620|ref|YP_001931871.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932687|gb|ACD67317.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 179

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 33/204 (16%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I+   +++++I+  G   ++  P        +      ++    +RQ+ +RL
Sbjct: 1   MFDYIKGKIKKKDKNHIVIEKLGFGLLVEVPDS------EKFKENIVYTYLLVRQEDVRL 54

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S+ +R  F+ L  + GVG + A+ ++S  +  E +E +   +   + +I GI  K 
Sbjct: 55  LGFVSEEERDLFLKLIQIHGVGVKHALNIISNFSVEEFIEIMENGDVDKLTEIQGIGNKT 114

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK                       +        +SALVNLGY + ++   
Sbjct: 115 AQRIIVELKGKI--------------------EFNESDELSQLVSALVNLGYDKKESVNV 154

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
              V+K+ K+       I+ AL+ 
Sbjct: 155 AKKVIKETKD-------IKEALKK 171


>gi|24215603|ref|NP_713084.1| Holliday junction DNA helicase RuvA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|24196756|gb|AAN50102.1| holliday junction DNA helicase RuvA [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 212

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 9/213 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQI 58
           MI  +KG ++ L   +V I+  G+ Y +    +T   L  +       L +   + +   
Sbjct: 1   MISGLKGTLKKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQLQIFHSINERGQ 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +LFGFL++ D+++F +++ +QG+G   A+ +LS  +A +L   +    +K + +IP +  
Sbjct: 61  KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEAKELEKIPKVKG 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF------AINAISALVNLGY 172
           K + +I  E+K     L   +       +     +   P            I  LV LG+
Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVILGLVQLGF 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +  A+  V  VLK   +  D  +IIR  L+++
Sbjct: 181 EEKTASKEVDKVLKIF-SSNDPGEIIREILKSL 212


>gi|45657032|ref|YP_001118.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|81407392|sp|Q72T73|RUVA_LEPIC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|45600269|gb|AAS69755.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 212

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 9/213 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQI 58
           MI  +KG +  L   +V I+  G+ Y +    +T   L  +       L +   + +   
Sbjct: 1   MISGLKGILRKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQLQIFHSINERGQ 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +LFGFL++ D+++F +++ +QG+G   A+ +LS  +A +L   +     K + +IP +  
Sbjct: 61  KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEVKELEKIPKVKG 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF------AINAISALVNLGY 172
           K + +I  E+K     L   +       +     +   P            I  LV LG+
Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVILGLVQLGF 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +  A+  V  VLK   +  D  +IIR  L+++
Sbjct: 181 EEKTASKEVDKVLKIF-SSNDPGEIIREILKSL 212


>gi|308271856|emb|CBX28464.1| Holliday junction ATP-dependent DNA helicase ruvA [uncultured
           Desulfobacterium sp.]
          Length = 204

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58
           MIG ++G +     + +L+ V  V Y I  P   +  L    +GD  TL++  H  + Q 
Sbjct: 1   MIGYLEGKLLKKDSERILLLVNHVGYEILLPAIVMETLNTRSVGDEITLYIYYHQSEKQP 60

Query: 59  R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           +  L GF  ++++++F    SV+ +G   A+  L  ++  ++  +I  +++  + Q+ GI
Sbjct: 61  KPVLIGFNLEVEKEFFQYFISVEDIGPLKAVKAL-TMSVRDISRAIESKDAAALKQLKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175
             + A +I+  L+GK    + + +        EQ +           I  LV+ LGY   
Sbjct: 120 GNRTAQKIIATLEGKMNKFALIRK-------SEQTYDSVSEDIGQKVIDLLVSQLGYKPG 172

Query: 176 QATTAVVSVLKKEKNIADDSQII 198
           +A T VV  LK+ K I     ++
Sbjct: 173 EAKTMVVQALKRNKFITSPEDLL 195


>gi|123966258|ref|YP_001011339.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200624|gb|ABM72232.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9515]
          Length = 228

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 96/217 (44%), Gaps = 18/217 (8%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53
           MI  +KG +   ++     Y+LI+ QG+ Y I       + L           L+++   
Sbjct: 1   MISWVKGKLVSSWQTNNKFYILINCQGLGYEIQTIESVFNELNSKNVSDKEIILWLKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF +   R +F+ + +++G+G+++ + +L++ T  +++ +I   + K+I+ +
Sbjct: 61  KEDSDSLFGFFTKDQRDFFIQILNIKGIGSQIGIALLNKFTLNQIINAISNNDKKLISSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            GI  K+  RI+ ELK K    +  ++++    N        + S   +    L +L Y 
Sbjct: 121 QGIGQKMTDRIILELKSKV--FTQQIEKENLKTNNFLEENKELNSIFEDLELTLQSLNYP 178

Query: 174 QDQAT----TAV-----VSVLKKEKNIADDSQIIRLA 201
             +        +       +   E N      +++ A
Sbjct: 179 NKKIKNLFPKLINDIKDNKIATLEINSISFESLLKEA 215


>gi|148243841|ref|YP_001220080.1| DNA recombination protein RuvA [Acidiphilium cryptum JF-5]
 gi|146400404|gb|ABQ28938.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum
           JF-5]
          Length = 206

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 8/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G    + +   +IDV GV Y ++ P  TL  +       T+ ++T M   +I L
Sbjct: 1   MITQLTGIPRRIGDQECVIDVHGVGYGVHVPSATLDMIEGEAGPVTILIQTRMSDSEISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D Q F  L  VQGVG   A+ +LS++   EL  +I   + K +  + GI    
Sbjct: 61  YGFATPADLQTFRKLVGVQGVGPATALNLLSQLAPEELWRAIREADQKALTAVKGIGPAA 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+++EL+  A  L++ +    + ++        +   A     +L  LG+    A  A
Sbjct: 121 AKRLISELESHAAKLAAEMPAPAARLD--------LGLSADQLAQSLQRLGHAPSAARAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
               L   K    + +++  AL+
Sbjct: 173 AQFALNGAKPGDTEQELVARALQ 195


>gi|269792533|ref|YP_003317437.1| RuvA domain-containing protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100168|gb|ACZ19155.1| RuvA domain protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 194

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 13/173 (7%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSR 92
           R    +   G+   L V   +    I L+GF  D +R+ F+LL    GVG ++AMG+L+ 
Sbjct: 32  RAALEMASPGESIRLPVYLSVSDSGISLYGFGDDHERRVFLLLLQASGVGCKMAMGILNS 91

Query: 93  ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152
           +   E++++I   +   I++  G+  K A RI  ELK K  SL        + V+     
Sbjct: 92  MDKGEVLDAIASGDVARISRAQGVGPKRAERICFELKDKVTSLGIPRGNSGALVSTGS-- 149

Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
                      + AL+ LG+ + +A  A+  V  K +++ +D  ++R ALR +
Sbjct: 150 ----------ILEALMGLGFSRGEAAMALGEVRSKGEDLPEDQLLLR-ALRVL 191


>gi|157413283|ref|YP_001484149.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9215]
 gi|167012662|sp|A8G4N2|RUVA_PROM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157387858|gb|ABV50563.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9215]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 96/196 (48%), Gaps = 9/196 (4%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKI---GDFCTLFVETHM 53
           MI  I G +   ++     +VLI+ QG+ Y I         L          TL+++   
Sbjct: 1   MISWINGELVETWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKKITLWIKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S   + +F+ + SV+GVG+++ M +L++ + +E++++I  Q+ K+I  I
Sbjct: 61  KEDSDLLFGFTSKDQKFFFIEILSVRGVGSQIGMSILNKFSISEIIKAIKTQDKKLICSI 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K    S +  ++     + +     +     +    L +L Y 
Sbjct: 121 PGIGQKMSDRLILELKSKFK--SKIQIEEEKGQEEFEITNPEIYKLMEDLQLTLQSLNYK 178

Query: 174 QDQATTAVVSVLKKEK 189
             +  T +  ++K+  
Sbjct: 179 NKEIKTILPFLIKELG 194


>gi|332295726|ref|YP_004437649.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Thermodesulfobium narugense DSM 14796]
 gi|332178829|gb|AEE14518.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Thermodesulfobium narugense DSM 14796]
          Length = 194

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 20/209 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC-LGKIGDFCTLFVETHMRQDQIR 59
           MI  I GN+ G  E+ ++++  G+ Y+I  P   L     K GD   L++      +  +
Sbjct: 1   MIAYIVGNLIGFIENSIIVENNGLGYLIKLPPYLLEKNKNKKGDIIELYISHQFIGESQQ 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISM 118
           LFGF S  D + F  L  + GVG ++A+ ++S   T   L+  +   +   +  IPG+  
Sbjct: 61  LFGFESISDLESFQKLLKIHGVGVKLALQIISSFKTNPTLILDLKNDHISSLKSIPGVGE 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A RI  ELKG     S V   D + +                A+ ALV+LG    +A 
Sbjct: 121 KTAKRIFEELKGCFPEFSEVKFDDRAKL----------------AVDALVSLGVSFQKAK 164

Query: 179 TAVVSVLK--KEKNIADDSQIIRLALRAI 205
             V+  LK  ++ NI     II +A++ I
Sbjct: 165 EVVIDTLKDVQDLNIIKSEDIITMAIQRI 193


>gi|183220888|ref|YP_001838884.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910985|ref|YP_001962540.1| Holliday junction specific DNA binding protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|229560095|sp|B0SGZ5|RUVA_LEPBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560096|sp|B0SQF0|RUVA_LEPBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167775661|gb|ABZ93962.1| Holliday junction specific DNA binding protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779310|gb|ABZ97608.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 199

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 9/201 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  L  D ++++V GV Y +  P    L C  K+     +     +     R
Sbjct: 1   MIASLRGKLLQLEIDRLVVEVSGVGYEVMIPFPLHLECKDKLNTEIYIHTFHSITDRGQR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  DR+ F L++S+ G+G   A+ +LS   A +L +     + K + +IP +  K
Sbjct: 61  LFGFGSKKDRESFELIKSLHGIGELTALKILSFFQADDLYQIAKADDKKTLEKIPKVKGK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            + +I+ E+K         +       N+       +      A  AL+ LG+ +  AT 
Sbjct: 121 TSEKILFEIKQNLKKFEMFL-------NEGTTESSFVDRETDLATLALIQLGFDEKSATK 173

Query: 180 AVVSVLKKEKNIADDSQIIRL 200
            V    K    +   S I++ 
Sbjct: 174 QVADAKKLNPGL-SASDIVKQ 193


>gi|145652289|gb|ABP88205.1| hypothetical protein [Borrelia lonestari]
          Length = 195

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 22/211 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  V+I V    + ++     +  L ++ +   +    ++R+++I+L
Sbjct: 1   MINKIYGKIVEKRESSVVIVVLPFEFEVFVSSFCIEKL-ELLENIEILTYIYLRENEIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+ L+R+ F  L +V G+G R A+ +LS I  +E   +I  ++ ++I++I GI  KI
Sbjct: 60  FGFLNLLEREVFENLITVDGIGPRAALRILSGIKYSEFRNAIEREDIRLISKIKGIGNKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +LKGK I  S  +  D+   + EQ+                VN+G+ +    + 
Sbjct: 120 AGKIFLKLKGKFIK-SDKLDLDIKFKDLEQSI---------------VNMGFDRKLVISK 163

Query: 181 VVSVLKKEK--NIADDSQ---IIRLALRAIS 206
           +  +L  ++   + +  Q   + R  L+ +S
Sbjct: 164 IKEILVTDEFLMLGEVEQEQFLFRETLKRLS 194


>gi|317177676|dbj|BAJ55465.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F16]
          Length = 183

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|291545898|emb|CBL19006.1| Holliday junction resolvasome, DNA-binding subunit [Ruminococcus
           sp. SR1/5]
          Length = 134

 Score =  144 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F LL  V GVG + A+G+LS I+A EL  +++  + K I++ PGI  K A +++ ELK 
Sbjct: 1   MFKLLIGVNGVGPKGALGILSGISADELRFAVLSDDVKTISKAPGIGKKTAQKMILELKD 60

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190
           K     +   +      +       +      A+ ALV LGY    A  AV  V  ++  
Sbjct: 61  KLKLEDAFEMKLAHQQEEAAEGASDLRDSRQEAVEALVALGYSSADALRAVRKV-PEDVP 119

Query: 191 IADDSQIIRLALR 203
             D   I+R AL+
Sbjct: 120 ADDVEAILRAALK 132


>gi|87308915|ref|ZP_01091053.1| probable holliday junction DNA helicase ruvA [Blastopirellula
           marina DSM 3645]
 gi|87288258|gb|EAQ80154.1| probable holliday junction DNA helicase ruvA [Blastopirellula
           marina DSM 3645]
          Length = 208

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI KI G +  + E  + + V    Y +  P      L   +G+   L    ++  +  +
Sbjct: 1   MITKITGKVTSVSEAVLTLTVGAFEYEVLIPEFVRRQLQNHLGEEVALHTIEYLEGNPQQ 60

Query: 60  ------LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                 + GF   ++R++F L  SV GVG R A+  + R    E+   I  Q++K ++ +
Sbjct: 61  GRLTPRMIGFSDRIEREFFELFCSVDGVGVRKALRAMVR-PVQEVASLIEEQDTKGLSAL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+    A RI+ +L+ K    + +V +       E     +           L +LG+ 
Sbjct: 120 PGVGPATADRIVAKLRRKVPKFALLVGR------SELGEDIAPRDVISETFDVLRSLGHS 173

Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198
           +  A   + + L+++K   D   ++
Sbjct: 174 ESDARRLIDAALEEKKKYKDVETLL 198


>gi|205374298|ref|ZP_03227097.1| Holliday junction DNA helicase motor protein [Bacillus coahuilensis
           m4-4]
          Length = 148

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 4/148 (2%)

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           I L+GFL+  ++  FM L +V G+G + A+ +L     + ++ +I  +N   + + PG+ 
Sbjct: 2   ISLYGFLTMEEKLLFMKLLNVTGIGPKGALAILGSGDVSGVIHAIEEENEAFLVKFPGVG 61

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +++ +LKGK   +      ++     E+    S   F   AI AL  LGY   + 
Sbjct: 62  KKTARQMILDLKGKLQDVVPDFFPNLF--QPEKEDTLSSDHFLNEAILALKALGYSDRE- 118

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V   L+ E     D + I+  L+ +
Sbjct: 119 LKKVEPKLRNEPGKTSD-EYIKRGLQLL 145


>gi|213029463|ref|ZP_03343910.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 96

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 48/96 (50%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L    GVG +
Sbjct: 1   GYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPK 60

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  LALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 96


>gi|301168494|emb|CBW28084.1| holliday junction DNA helicase ruvA [Bacteriovorax marinus SJ]
          Length = 216

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 97/221 (43%), Gaps = 23/221 (10%)

Query: 1   MIGKIKGNIE-GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +      + V++   G+ Y +Y      + +   G   ++F+   +++    
Sbjct: 1   MIGHLQGEVIFSDGVEAVVLTNSGIGYQVYI-----NQVLPEGKSASIFISHVIKEASEE 55

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +++ F LL SV+GVG + A  ++  +   +++ SI+  + K + + PGI  K
Sbjct: 56  LYGFKTIREKKLFELLTSVKGVGPKSAFSLVGALGVDQIINSILFDDKKSLTKAPGIGNK 115

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI----------------NA 163
            A++++ +L+ K   +     +     +     I  + +                   +A
Sbjct: 116 AAAQMILDLQNKISKIKMYSNKSKGIQDVPAIQIPELSTSEQEESVHRESDNQELIIKDA 175

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           I A   LG+ +++       +L     I+   Q++ L L+ 
Sbjct: 176 IMACKELGFKEEKIIPLAQKILATN-EISKPEQLVHLVLKE 215


>gi|223889207|ref|ZP_03623796.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b]
 gi|223885456|gb|EEF56557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b]
          Length = 197

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+    + D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANFN-LSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V GVG + A+ VLS I   E  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKELIGVSGVGPKAALRVLSNIRYNEFKEAIDKEDIELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  S +    +    + +  I              V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINSELESTGLFRFKELEESI--------------VSMGFDRKIVNSK 165

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196


>gi|32473207|ref|NP_866201.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica SH 1]
 gi|81661574|sp|Q7USB0|RUVA_RHOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|32397886|emb|CAD73887.1| probable holliday junction DNA helicase ruvA [Rhodopirellula
           baltica SH 1]
 gi|327540460|gb|EGF27045.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica WH47]
          Length = 207

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58
           MI  I G +  + E  V+I      Y +Y    T   L  +IG+   L    ++  +   
Sbjct: 1   MIVSIAGKLVQVGEISVIIQAAPFDYEVYVGDYTRRQLQNQIGNEVRLHTLDYIEGNAQG 60

Query: 59  -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                RL GF +  +RQ+F L  SV GVG + A+  + R    EL   I  Q++K ++ +
Sbjct: 61  GRLTPRLIGFSTLPERQFFDLFCSVDGVGVKKALRAMVR-PVKELAVLIEEQDAKTLSAL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI    + +++ +L+ K    + +V        +    +        +   ALV LG+ 
Sbjct: 120 PGIGPATSEKVIAKLRRKMPRFALMV-----AGGEVADAMEVESPIVSDTYDALVTLGHS 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198
           +  A   +   L   K   D   ++
Sbjct: 175 ESDARKLIDETLATGKKFKDTESLL 199


>gi|283781353|ref|YP_003372108.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM
           6068]
 gi|283439806|gb|ADB18248.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM
           6068]
          Length = 210

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC---PIRTLSCLGKIGDFCTLFVETHMRQD- 56
           MI +I   +  L +D  ++      Y +       RTLS    +G   +L    ++  D 
Sbjct: 1   MITRITAKLIQLTDDAAILSAPPFDYEVLIAAVSRRTLSS--SVGQEISLHTIHYLDGDP 58

Query: 57  -----QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
                  RL GF+S+++R++F +  SV GVGA+ A+  + R    E+   I  Q+++ ++
Sbjct: 59  SRGKVTPRLVGFVSEVEREFFEMFCSVDGVGAKKALRAMQR-PVQEISVMIEEQDAEGLS 117

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
            +PGI    A RI+ +L+ K    + +V ++ +   + +  +  +         AL  LG
Sbjct: 118 SLPGIGAATAERIIAKLRRKMSKFALLVARESAGETEIKRDVVELSF------EALRTLG 171

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQII 198
           + +  A   + SVLK +K  AD   ++
Sbjct: 172 HSESDARKLLDSVLKSKKKFADVEAVL 198


>gi|217034714|ref|ZP_03440116.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10]
 gi|216942827|gb|EEC22324.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10]
          Length = 183

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKTRLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L      +   +Q + S V                   AL +LG+   +    
Sbjct: 120 ADKIMVDL------IGFFIQDETSPV-------------RNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSTETAIKEALQQL 181


>gi|216264161|ref|ZP_03436153.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a]
 gi|221217494|ref|ZP_03588965.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a]
 gi|224532548|ref|ZP_03673171.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23]
 gi|224533942|ref|ZP_03674527.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a]
 gi|225549276|ref|ZP_03770249.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a]
 gi|225549747|ref|ZP_03770712.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a]
 gi|226321147|ref|ZP_03796688.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805]
 gi|215980634|gb|EEC21441.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a]
 gi|221192772|gb|EEE18988.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a]
 gi|224512491|gb|EEF82869.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23]
 gi|224512945|gb|EEF83311.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a]
 gi|225369707|gb|EEG99155.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a]
 gi|225370134|gb|EEG99574.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a]
 gi|226233439|gb|EEH32179.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805]
 gi|312148088|gb|ADQ30747.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi JD1]
 gi|312149630|gb|ADQ29701.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi N40]
          Length = 197

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+    + D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANFN-LSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V GVG R A+ VLS I   E  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  S +    +    + +  I              V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINSELESTGLFRFKELEESI--------------VSMGFDRKIVNSK 165

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196


>gi|225552109|ref|ZP_03773049.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1]
 gi|225371107|gb|EEH00537.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1]
          Length = 197

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+    + D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFDFELLVSAFCLANFN-LSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V GVG R A+ VLS I   E  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  S +    +    + +  I              V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINSELESTGLFRFKELEESI--------------VSMGFDRKIVNSK 165

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196


>gi|315586830|gb|ADU41211.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori 35A]
          Length = 183

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETGPACNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSTEAAIKEALQQL 181


>gi|325106603|ref|YP_004267671.1| Holliday junction DNA helicase subunit RuvA [Planctomyces
           brasiliensis DSM 5305]
 gi|324966871|gb|ADY57649.1| Holliday junction DNA helicase subunit RuvA [Planctomyces
           brasiliensis DSM 5305]
          Length = 208

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58
           MI  I+G +  L E    +++      ++ P      L GKIG+   L    ++  +   
Sbjct: 1   MISSIRGELLALEETSAFLNIGAFTIEVFIPDFVRRQLQGKIGEPIELRTMAYLDGNPQK 60

Query: 59  ------RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
                 RL GF S  +  +F L+ SV G+G + A+  + R    E+  +I  Q++K ++ 
Sbjct: 61  GGRMTPRLVGFTSKAELAFFELICSVDGLGIKKALAAIVR-PVREVAAAIEQQDTKTLST 119

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +PGI   +A RI+ +L+ K    + +V Q      +       M         AL+ LG+
Sbjct: 120 LPGIGPAVAERIVAKLRRKMTRFALMVDQASGEAYEP------MNDQVSETYEALLALGH 173

Query: 173 GQDQATTAVVSVLKKEKNIADDSQII 198
             D A   + + LK  K       ++
Sbjct: 174 SADDAHNKIDTALKSGKKFKSVEDML 199


>gi|15594369|ref|NP_212157.1| Holliday junction DNA helicase RuvA [Borrelia burgdorferi B31]
 gi|195941763|ref|ZP_03087145.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi 80a]
 gi|218249661|ref|YP_002374557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7]
 gi|226322062|ref|ZP_03797587.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26]
 gi|3914937|sp|P70827|RUVA_BORBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725436|sp|B7J0W2|RUVA_BORBZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2687899|gb|AAC66409.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi B31]
 gi|218164849|gb|ACK74910.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7]
 gi|226232652|gb|EEH31406.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26]
          Length = 197

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+    + D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANFN-LSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V GVG R A+ VLS I   E  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDKEDIELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  S +    +    + +  I              V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINSELESTGLFRFKELEESI--------------VSMGFDRKIVNSK 165

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196


>gi|207092382|ref|ZP_03240169.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 183

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +R+D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLEAGQKVRLKILQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENKPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181


>gi|224534918|ref|ZP_03675487.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S]
 gi|224513858|gb|EEF84183.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S]
          Length = 196

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + I      L    K+ D   LF   + R+++++L
Sbjct: 1   MINKIYGKVIEKKESSLVLMTAVFEFEILVSAFCLDNF-KLSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ +++A+I GI  K+
Sbjct: 60  FGFLNSDERETFKRLIGVSGIGPRAALRVLSSIRYNEFKDAIDREDIELVAKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  + +          E++                V++G+ +   ++ 
Sbjct: 120 AGKMFLHLQGKLLINNELESSLFGFKELEESI---------------VSMGFDRRIVSSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEAFNLVEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|317180262|dbj|BAJ58048.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F32]
          Length = 183

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L      +   +Q + S                     AL +LG+   +    
Sbjct: 120 ADKIMVDL------IGFFIQDETSPT-------------RNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEVAIKEALQQL 181


>gi|254779490|ref|YP_003057595.1| Holliday junction DNA helicase RuvA [Helicobacter pylori B38]
 gi|254001401|emb|CAX29394.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pylori B38]
          Length = 183

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L ++G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QVGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSIETAIKEALQQL 181


>gi|210135073|ref|YP_002301512.1| Holliday junction DNA helicase RuvA [Helicobacter pylori P12]
 gi|210133041|gb|ACJ08032.1| holliday junction DNA helicase [Helicobacter pylori P12]
          Length = 183

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181


>gi|308063716|gb|ADO05603.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Sat464]
          Length = 183

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQTGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|308183035|ref|YP_003927162.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4]
 gi|308065220|gb|ADO07112.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4]
          Length = 183

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|219684886|ref|ZP_03539828.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr]
 gi|219671831|gb|EED28886.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr]
          Length = 196

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYARENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  + +          E++                V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINNELESSLFGFKELEESI---------------VSMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|297380083|gb|ADI34970.1| Holliday junction DNA helicase RuvA [Helicobacter pylori v225d]
          Length = 183

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L      +   +Q + S V                   AL +LG+   +    
Sbjct: 120 ADKIMVDL------IGFFIQDETSPV-------------RNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEVAIKEALQQL 181


>gi|317182188|dbj|BAJ59972.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F57]
          Length = 183

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETGPMRNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|109947771|ref|YP_664999.1| Holliday junction DNA helicase RuvA [Helicobacter acinonychis str.
           Sheeba]
 gi|123066165|sp|Q17WH6|RUVA_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|109714992|emb|CAK00000.1| holliday junction DNA helicase [Helicobacter acinonychis str.
           Sheeba]
          Length = 183

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +    V I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MTVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTASML-QTGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L      +   +Q +   V+               A  AL +LG+   +    
Sbjct: 120 ADKIMVDL------IGFFIQDETKPVHN-------------EAFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +LKK K      + I+ AL+ +
Sbjct: 157 INPILKKLKPNLSVEEAIKEALQQL 181


>gi|51598286|ref|YP_072474.1| Holliday junction DNA helicase RuvA [Borrelia garinii PBi]
 gi|81610281|sp|Q662Y9|RUVA_BORGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|51572857|gb|AAU06882.1| Holliday junction DNA helicase [Borrelia garinii PBi]
          Length = 196

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYARENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   +  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNDFKEAIDREDVELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  + +          E++                V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINNELESSLFGFKELEESI---------------VSMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|188527709|ref|YP_001910396.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Shi470]
 gi|229560035|sp|B2UU34|RUVA_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188143949|gb|ACD48366.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           Shi470]
 gi|308062206|gb|ADO04094.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Cuz20]
          Length = 183

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|217032932|ref|ZP_03438407.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128]
 gi|298736165|ref|YP_003728691.1| Holliday junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori B8]
 gi|216945342|gb|EEC24014.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128]
 gi|298355355|emb|CBI66227.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pylori B8]
          Length = 183

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L ++G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLEVGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKKLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181


>gi|219685405|ref|ZP_03540224.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04]
 gi|219673178|gb|EED30198.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04]
          Length = 196

 Score =  140 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   +  +++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYAGENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  + +          E++                V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINNDLESSLFGFKELEESI---------------VSMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|261838266|gb|ACX98032.1| Holliday junction DNA helicase [Helicobacter pylori 51]
          Length = 183

 Score =  140 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPKLSTEAAIKEALQQL 181


>gi|308184664|ref|YP_003928797.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180]
 gi|308060584|gb|ADO02480.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180]
          Length = 183

 Score =  140 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPVRNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INQVLKTLKPHLSIEAAIKEALQQL 181


>gi|167005424|ref|ZP_02271182.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 135

 Score =  140 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKG 130
            A RI+ EL  
Sbjct: 120 SAKRIIVELSD 130


>gi|317012687|gb|ADU83295.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           Lithuania75]
          Length = 183

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181


>gi|108563288|ref|YP_627604.1| Holliday junction DNA helicase RuvA [Helicobacter pylori HPAG1]
 gi|123073768|sp|Q1CSZ2|RUVA_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|107837061|gb|ABF84930.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1]
          Length = 183

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLETGQKVRLKILQVIKEDANLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181


>gi|15611882|ref|NP_223533.1| Holliday junction DNA helicase RuvA [Helicobacter pylori J99]
 gi|6685958|sp|Q9ZKW9|RUVA_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|4155386|gb|AAD06396.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobacter pylori J99]
          Length = 183

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QTGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INPVLKTLKPHLSIEAAIKEALQQL 181


>gi|251771977|gb|EES52549.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum
           ferrodiazotrophum]
          Length = 211

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 85/204 (41%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ--DQI 58
           MI ++ G IE    D+V++    V Y +      +S L       +L       +  +  
Sbjct: 1   MIARLFGTIEETGSDWVILRAGAVGYRVLLSPYAMSQLSAREKEISLRTFLLWGEHQETP 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L GFL   + + F  ++ + G+G   A+ ++S +      E+I   +   + ++ G+  
Sbjct: 61  LLVGFLDAAEEELFHEIRRIGGLGPTKAIRMIS-LPPGSFWEAIASGDVGRLRKLKGVGE 119

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----LVN-LGYG 173
             A ++++EL+ +  SL S    D   ++   + +   P     A++A    LV   G+ 
Sbjct: 120 TTAKKLVSELRDRVPSLISASPAD--SLSSGGSPLPEGPLSPRGAVAAVREVLVAQFGHS 177

Query: 174 QDQATTAVVSVLKKEKNIADDSQI 197
             +A   +   L +  +   + ++
Sbjct: 178 PSEADAMIRRALSRNPSARTEEEL 201


>gi|317011094|gb|ADU84841.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           SouthAfrica7]
          Length = 183

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKKLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPVYNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +LKK K      + I+ AL+ +
Sbjct: 157 INPILKKLKPNLGIEEAIKEALQQL 181


>gi|1941919|emb|CAA63622.1| orf4 [Bacillus subtilis subsp. subtilis str. 168]
          Length = 105

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K     T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERSQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK 108
           +GF +  ++  F  L +V G+G + A+ +L       ++++I  ++  
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEA 105


>gi|15645501|ref|NP_207676.1| Holliday junction DNA helicase RuvA [Helicobacter pylori 26695]
 gi|3122834|sp|O25549|RUVA_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2314020|gb|AAD07932.1| Holliday junction DNA helicase (ruvA) [Helicobacter pylori 26695]
          Length = 183

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTAALL-EAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181


>gi|332673720|gb|AEE70537.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori 83]
          Length = 183

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181


>gi|261839678|gb|ACX99443.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           52]
          Length = 183

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +R  S L ++G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMR-ASALLQMGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPACNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181


>gi|160902900|ref|YP_001568481.1| helix-hairpin-helix DNA-binding motif-containing protein [Petrotoga
           mobilis SJ95]
 gi|254767380|sp|A9BIJ5|RUVA_PETMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160360544|gb|ABX32158.1| helix-hairpin-helix motif [Petrotoga mobilis SJ95]
          Length = 190

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI   IE   ++ VLI +  +    Y  +  +    K GD    F    + +    L
Sbjct: 1   MIRKINATIEDFEDEKVLIKIGVLTLEAYPSLNVIRYF-KKGDQYEFFASLEISEWNTSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F   ++R  F  L+ V  +G R+A  +L +  A E ++ I  Q++ +++ +PGI  K 
Sbjct: 60  YIFKDKIERDVFESLKKVSKIGPRIASKILRKTDAEEFIQMINSQDTALLSSLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+++EL               S  +          +    AI AL  LG+ + +    
Sbjct: 120 AERLISEL-----------SNSFSAYSTGADTQSYGNNNLKEAIEALETLGFQRYEIMKV 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   +       +II+  L  +
Sbjct: 169 IGQL---DLEDLKTEEIIKECLTRL 190


>gi|224532061|ref|ZP_03672693.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116]
 gi|224511526|gb|EEF81932.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116]
          Length = 196

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   + R+++++L
Sbjct: 1   MINKIHGKVVEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ +++A+I GI  K+
Sbjct: 60  FGFLNSDERETFKGLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVAKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  + +          E++                +++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINNELESNLFRFKELEESI---------------ISMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 165 LKEAYNLVEFSNLKDSEKEQFLFKEVLKRIS 195


>gi|218780990|ref|YP_002432308.1| DNA recombination protein RuvA domain I [Desulfatibacillum
           alkenivorans AK-01]
 gi|254766956|sp|B8FBT7|RUVA_DESAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218762374|gb|ACL04840.1| DNA recombination protein RuvA domain I [Desulfatibacillum
           alkenivorans AK-01]
          Length = 204

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 11/201 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           MIG ++G I     + ++I   GV Y +  P    + + K  GD   L++  H  + Q +
Sbjct: 1   MIGYLEGKILYRQGERIMILAGGVGYEVLLPSVVSASMTKGPGDETGLYIYFHQTEKQPK 60

Query: 60  --LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L GF S  +R++F    SV+ +G   A+  L  I   E+  +I  ++S  + ++ GI 
Sbjct: 61  PVLIGFNSLEEREFFERFISVEAIGPIKAVSALC-IPIGEIAAAIENKDSGALRKLKGIG 119

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQ 176
            + A +I+  L+GK    +     + +     + +   +       +  LVN LG+   +
Sbjct: 120 ARTADKIIATLRGKMAVFAGEHGGEPAGPAPVEENFHLL------VLDVLVNQLGHKAAE 173

Query: 177 ATTAVVSVLKKEKNIADDSQI 197
           A   +   +K+   I+   ++
Sbjct: 174 AKELINQAIKRNPAISSPEEL 194


>gi|296122693|ref|YP_003630471.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM
           3776]
 gi|296015033|gb|ADG68272.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM
           3776]
          Length = 207

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI +I G +  L ED V +++    Y +  P      L  K+G+  +L    ++  +  +
Sbjct: 1   MITRITGKLVRLSEDIVRLEIGAFEYEVLVPEFVRRQLQPKLGEVVSLCTIDYLDGNPQQ 60

Query: 60  ------LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                 L GFLS+ + ++F ++ SV G+G +  +  + R    E+ E+I  Q+ K +  +
Sbjct: 61  GRLVPRLAGFLSETELEFFEMICSVDGMGVKKTLRAMVR-PVREIAEAIEEQSIKELTLL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+   +A RI+ +L+ K    + +V +++        ++ +       A  AL+ LG+ 
Sbjct: 120 PGVGPAMAERIVAKLRRKMTKFALMVAREVPREADVDRNVLT------EAYEALMALGHS 173

Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198
             +A   +  V  ++K   D   ++
Sbjct: 174 SIEARDKIDQVASQKKKFKDVQDVL 198


>gi|320102187|ref|YP_004177778.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644]
 gi|319749469|gb|ADV61229.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644]
          Length = 232

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 95/215 (44%), Gaps = 18/215 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQI- 58
           MI  ++G +E + ++  ++ V      ++    T   +  K+G+   L+   ++  +   
Sbjct: 1   MITLVRGILERVGQEEAILSVPPWEIEVWVTELTRRQIQTKLGEEIRLYTILNIEGNATM 60

Query: 59  -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                RL GFLS ++R++F +  SV GVG R A+  + +    +L  +I  Q+   +A  
Sbjct: 61  GRMSPRLIGFLSPVEREFFEVFCSVDGVGVRKALRAICQ-PVKDLARTIQDQDVATLATF 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVN----------KEQAHICSMPSFAINA 163
           PG+   +A RI+ +L+ K    +  +       +             +   + P    + 
Sbjct: 120 PGVGEALAERIVAKLRRKVGKFALALGDPRVPASRFTASDLEDAPHSSSNATDPEIVRDV 179

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
            +AL+++G+ + QA  A+   L  +K     + +I
Sbjct: 180 YAALLSVGHTETQARQAIDQALSSKKAFRSVADMI 214


>gi|307637571|gb|ADN80021.1| Holliday junction DNA helicase [Helicobacter pylori 908]
 gi|325996162|gb|ADZ51567.1| Holliday junction DNA helicase [Helicobacter pylori 2018]
 gi|325997758|gb|ADZ49966.1| Holliday junction DNA helicase [Helicobacter pylori 2017]
          Length = 183

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALTILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INPVLKTLKPNLSIEAAIKEALQQL 181


>gi|111114845|ref|YP_709463.1| Holliday junction DNA helicase RuvA [Borrelia afzelii PKo]
 gi|216264081|ref|ZP_03436075.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1]
 gi|123047085|sp|Q0SPE1|RUVA_BORAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110890119|gb|ABH01287.1| Holliday junction DNA helicase [Borrelia afzelii PKo]
 gi|215980125|gb|EEC20947.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1]
          Length = 196

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   + ++++++L
Sbjct: 1   MINKIYGKVIEKKESSLVLMTAVFEFELLVSAFCLANF-KLLDKVELFTYLYTKENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ ++IA+I GI  K+
Sbjct: 60  FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDIELIAKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +            +N E             +I   V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLL------------INNELESSLFRFKELEESI---VSMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEAFNLVEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|224370135|ref|YP_002604299.1| RuvA [Desulfobacterium autotrophicum HRM2]
 gi|259495639|sp|C0QKP5|RUVA_DESAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|223692852|gb|ACN16135.1| RuvA [Desulfobacterium autotrophicum HRM2]
          Length = 214

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQI 58
           MIG ++G +  L  D VL+ V  V Y I  P   ++ +      +F  L++  H + D+ 
Sbjct: 1   MIGFLQGKVLNLEADNVLLLVNQVGYEILLPATVVASVQNKLSDEFLNLYIYYH-QTDRQ 59

Query: 59  ---RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
               L GF S  ++ +F L  +V  +G   A   +   + + +  +I  ++   +A + G
Sbjct: 60  PKPVLIGFDSAEEKDFFQLFITVDAIGPLKAAKAME-HSVSTIARAIENKDVAFLATLKG 118

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALV-NLGY 172
           I  + A +I+  L GKA        +  +     +    S+P        +  LV  LG+
Sbjct: 119 IGRRTAQKIVAALHGKAGRFLLAADEAGAGDGVSKTGTPSLPIQKAIDQVVDVLVQQLGH 178

Query: 173 GQDQATTAVVSVLKKEKNIADDSQI 197
               A   V   L ++  I     +
Sbjct: 179 TPSAAKMMVAQALDRDPEIMTPEAL 203


>gi|208434791|ref|YP_002266457.1| Holliday junction DNA helicase [Helicobacter pylori G27]
 gi|226698733|sp|B5Z7P2|RUVA_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|208432720|gb|ACI27591.1| Holliday junction DNA helicase [Helicobacter pylori G27]
          Length = 183

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALETHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPSLSIEAAIKEALQQL 181


>gi|323465932|gb|ADX69619.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           helveticus H10]
          Length = 140

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ D+  F+ L SV G+G + A+ +++   A  L E+I     K + + PG+  K 
Sbjct: 2   YGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 61

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK           ++ ++++     ++P    +A+ AL+ LGY Q +    
Sbjct: 62  ASQIVLDLKGKLRDY-------VARLDRQDEEQGNIPPALNDALLALIALGYTQKEVDRI 114

Query: 181 VVSVLKKEKNIAD 193
              + +   + AD
Sbjct: 115 TPKLEEVNADTAD 127


>gi|317014289|gb|ADU81725.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           Gambia94/24]
          Length = 183

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDANLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INPVLKTLKPHLSIEAAIKEALQQL 181


>gi|255027975|ref|ZP_05299961.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-003]
          Length = 110

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLT 110


>gi|26553733|ref|NP_757667.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2]
 gi|38258589|sp|Q8EWC5|RUVA_MYCPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|26453740|dbj|BAC44071.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2]
          Length = 219

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 95/213 (44%), Gaps = 12/213 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--- 57
           MI  I G I     +Y++++     Y ++        + +      +FV T + Q+    
Sbjct: 1   MIEYIIGKISYKNNNYLILENNFKGYKLFMSDP---NIFEENSSAKIFVYTKIFQNNKNN 57

Query: 58  --IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
                +GF +  ++ +F  L +V G+G + ++ +L       L E I  ++ + ++ + G
Sbjct: 58  FLFEYYGFKTLREKIFFENLLTVNGIGPKTSLTILRN-DLNLLKELIRNEDIESLSVLEG 116

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            + K A  I++ L  K  +   + + +    +       +  +   + +SAL  LGY ++
Sbjct: 117 FTNKTALSIVSALSYKLKN-ERISEYNNDVNHSSINQQSNSYNPVPDLVSALKALGYKKN 175

Query: 176 QATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206
               A+  ++ +  N+++D  S +I  A++ IS
Sbjct: 176 MIEKAINLLIPQLSNVSEDQISDLISQAIKIIS 208


>gi|161936257|ref|YP_115931.2| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 232]
          Length = 221

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 24/216 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++  G  Y+IY P           +   +++  H        +GF S 
Sbjct: 7   GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ 
Sbjct: 64  RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170
           E + K    +   +      N E            A I    S   +  +A     L  L
Sbjct: 123 EFQKKYERFNENHKNQTEETNPETQEKELEKEDDLADITIQKSNLEDKTAANLEDTLKML 182

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           G+   Q   A+  V   E    +   +I  A++ IS
Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214


>gi|72080739|ref|YP_287797.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448]
 gi|90135315|sp|Q4A7W5|RUVA_MYCH7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71913863|gb|AAZ53774.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448]
          Length = 221

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++  G  Y+IY P           +   +++  H        +GF S 
Sbjct: 7   GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ 
Sbjct: 64  RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170
           E + K    +   +      N++            A I    S   +  +A     L  L
Sbjct: 123 EFQKKYERFNENHKNQTEETNQDSQEKELEKNDDLADITIQKSNLEDKTAANLEDTLKML 182

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           G+   Q   A+  V   E    +   +I  A++ IS
Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214


>gi|312601377|gb|ADQ90632.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           hyopneumoniae 168]
          Length = 221

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 24/216 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++  G  Y+IY P   +    +  +   +++  H        +GF S 
Sbjct: 7   GKIVSKNKNYLILENHGSGYLIYVPR--IDRFNR-DENRKIYIYEHENDYTKITYGFASF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ 
Sbjct: 64  RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170
           E + K    +   +      N++            A I    S   +  +A     L  L
Sbjct: 123 EFQKKYERFNENHKNQAEETNQDTQEKELEKKDDLADITIQKSNLEDRTAANLEDTLKML 182

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           G+   Q   A+  V   E    +   +I  A++ IS
Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214


>gi|71893769|ref|YP_279215.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J]
 gi|90135325|sp|Q4A9R7|RUVA_MYCHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71851896|gb|AAZ44504.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J]
          Length = 221

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++  G  Y+IY P           +   +++  H        +GF S 
Sbjct: 7   GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ 
Sbjct: 64  RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170
           E + K    +   +      N++            A I    S   +  +A     L  L
Sbjct: 123 EFQKKYERFNENHKNQTEETNQDSQEKELEKKDDLADITIQKSNLEDKTAANLEDTLKML 182

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           G+   Q   A+  V   E    +   +I  A++ IS
Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214


>gi|203287496|ref|YP_002222511.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
 gi|226698726|sp|B5RQK6|RUVA_BORRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|201084716|gb|ACH94290.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
          Length = 196

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  ++I      + I         L ++ +   +    H R D ++L
Sbjct: 1   MINKIYGKIVDKKESSIIILAFPFEFEILVSSFCKMEL-RLLEDVEILTYFHFRDDDVKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G + A+ +LS I       +I  ++  +I+++ GI  KI
Sbjct: 60  FGFLNISEREVFENLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLISKVKGIGNKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +L+GK +         +     EQ+                VN+G+ +     A
Sbjct: 120 AGKIFLKLRGKLVKGDESSSYMLKFKELEQSI---------------VNMGFDRKLVVVA 164

Query: 181 VVSVLKKEK----NIADDSQ-IIRLALRAIS 206
              ++  +K      A+  Q +    L+ +S
Sbjct: 165 FREIMLSDKFLILKEAEQEQFLFTETLKRLS 195


>gi|203283953|ref|YP_002221693.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
 gi|226698725|sp|B5RLN1|RUVA_BORDL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|201083396|gb|ACH92987.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
          Length = 196

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  ++I      + I         L ++ +   +    H R D ++L
Sbjct: 1   MINKIYGKIVDKKESSIIILAFPFEFEILVSSFCKMEL-RLLEDVEILTYFHFRDDDVKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G + A+ +LS I       +I  ++  +I+++ GI  KI
Sbjct: 60  FGFLNISEREVFEDLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLISKVKGIGNKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +L+GK +         +     EQ+                VN+G+ +     A
Sbjct: 120 AGKIFLKLRGKLVKGDESSSYMLKFKELEQSI---------------VNMGFDRKLVVVA 164

Query: 181 VVSVLKKEK----NIADDSQ-IIRLALRAIS 206
              ++  +K      A+  Q +    L+ +S
Sbjct: 165 FREIMLSDKFLILKEAEQEQFLFTETLKRLS 195


>gi|206603017|gb|EDZ39497.1| probable Holliday junction DNA helicase (RuvA) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 208

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 80/202 (39%), Gaps = 9/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQ--D 56
           MI ++ G      E+ V++    V Y ++    +   L    +     L ++    +  +
Sbjct: 1   MIARLWGVPVEWEEESVILRAGDVGYRVHLSPCSHQKLRSRPEGLVLELLIQHFWNEHLE 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L GF    ++  F  L+ V G+G   A+ +L+ I   + +  +   ++  +  + G+
Sbjct: 61  APLLAGFPDPEEQTLFNQLRKVPGLGPLSALRLLA-IPVGDFLTIVRDNDAGRLKGLKGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-NLGYGQD 175
             K A +I+ EL+G    ++           K      S+     +    LV   G+   
Sbjct: 120 GEKTARKILGELRGHVDWIAESTSGLSPASGKSPESPASLARSVQDV---LVRQFGHTPQ 176

Query: 176 QATTAVVSVLKKEKNIADDSQI 197
           +A   V   L+++ +I+   ++
Sbjct: 177 EAQRLVSEALRRQPSISSMEEL 198


>gi|254821998|ref|ZP_05226999.1| Holliday junction DNA helicase RuvA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 105

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1   MIAAVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106
           +GF     R  F+ L SV GVG R+AM  L+   A  L +++   +
Sbjct: 60  YGFTDTDTRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGD 105


>gi|72382108|ref|YP_291463.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str.
           NATL2A]
 gi|90135557|sp|Q46L68|RUVA_PROMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72001958|gb|AAZ57760.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus
           marinus str. NATL2A]
          Length = 224

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 3/167 (1%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y I    + +    ++ +   L++    R+D   L+GF+    R  F  + SV G+G ++
Sbjct: 30  YEIQLLPKQIDK-AEVLNEFELWIHQIDREDGTSLYGFIEVNQRDLFREIISVNGIGPQI 88

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
            M +L      +LV +I  + S ++ +  GI  +IA R++ EL+ K    +         
Sbjct: 89  GMAMLEEFEVPQLVNAIENKESNLLTKTQGIGKRIAERLIVELRNKLQRFTD--NDKTIH 146

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
            NK          +       L +LGY  ++   ++  +   EK  +
Sbjct: 147 ENKNDIEANQFSKYIDEIYLILNSLGYVDNEIKESIKIITINEKENS 193


>gi|260222298|emb|CBA31722.1| Holliday junction ATP-dependent DNA helicase ruvA [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 139

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 53  MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
           +R+D   L+GF +  +R+ F  L  + GVG R A+ VLS +   +L +++ LQ +  + +
Sbjct: 2   VREDAQILYGFATSTEREAFRELIKISGVGPRTALSVLSGMDVGDLAQAVTLQEAGRLIK 61

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +PGI  K A R              +++          A + ++     + + AL+ LGY
Sbjct: 62  VPGIGKKTAER-------------LLLELKGKLGADLGAPLGAVGDAQSDILQALLALGY 108

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                     + LK        S  I+LAL++++
Sbjct: 109 S----EKEAAAALKALPKDVGVSDGIKLALKSLA 138


>gi|124025644|ref|YP_001014760.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. NATL1A]
 gi|166230583|sp|A2C1Y5|RUVA_PROM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123960712|gb|ABM75495.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. NATL1A]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y I    + +    ++ +   L++    R+D   L+GF+    R  F  + SV G+G ++
Sbjct: 30  YEIQLLPKQIDK-AEVLNEFELWIHQIDREDGTSLYGFIEVNQRDLFREIISVNGIGPQI 88

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
            M +L      +LV +I  + S ++ +  GI  +IA R++ EL+ K    +         
Sbjct: 89  GMAMLEEFEVPQLVNAIENKESNLLTKTQGIGKRIAERLIVELRNKLQRFTD--NDKTIH 146

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
            NK+         +       L +LGY  ++   ++  +   EK  +
Sbjct: 147 ENKKGIEANQFSKYIDEIYLILNSLGYVDNEIKESIKIITINEKENS 193


>gi|1620916|emb|CAA70096.1| specificity factor of RuvAB helicase [Borrelia burgdorferi]
          Length = 178

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 20/186 (10%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           + +      L+    + D   LF   + R+++++LFGFL+  +R+ F  L  V GVG R 
Sbjct: 7   FELLVSAFCLANFN-LSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRA 65

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
           A+ VLS I   E  E+I  ++ +++++I GI  K+A ++   L+GK +  S +    +  
Sbjct: 66  ALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFR 125

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LKKEKNIADDSQ---IIRL 200
             + +  I              V++G+ +    + +     L +  N+ D  +   + + 
Sbjct: 126 FKELEESI--------------VSMGFDRKIVNSKIREAFNLAEFANLKDSEKEQFLFKE 171

Query: 201 ALRAIS 206
            L+ IS
Sbjct: 172 VLKRIS 177


>gi|153827628|ref|ZP_01980295.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae
           MZO-2]
 gi|149737900|gb|EDM52805.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae
           MZO-2]
          Length = 120

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 10/125 (8%)

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMS 144
           + + +LS +TA + V  +  ++   + ++PG+  K A R++ E+K +          D+ 
Sbjct: 1   MGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWG---AGDLF 57

Query: 145 CVNKEQAHICSMP----SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
               + A + S P    +    A+SAL+ LGY   QA+ AV  V K   +     ++IR 
Sbjct: 58  TPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASKAVSQVAKAGMS---SEELIRE 114

Query: 201 ALRAI 205
           AL+++
Sbjct: 115 ALKSM 119


>gi|124516217|gb|EAY57725.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum
           rubarum]
          Length = 208

 Score =  127 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 82/202 (40%), Gaps = 9/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQ--D 56
           MI ++ G      E+ V++    V Y ++    +   L    +     L ++    +  +
Sbjct: 1   MIARLWGVPVEWEEESVILRAGDVGYRVHLSPCSHQKLRSRPEGLVLELLIQHFWNEHLE 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L GF    ++  F  L+ V G+G   A+ +L+ I   + +  +   ++  +  + G+
Sbjct: 61  APLLAGFPDPDEQTLFNQLRKVPGLGPLSALRLLA-IPVGDFLTIVRDNDAGRLKGLKGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-NLGYGQD 175
             K A +I+ EL+G+   ++       +   K      S+     +    LV   G+   
Sbjct: 120 GEKTARKILGELRGQVDWIAESSTVITASSGKGPDTPASLARSVQDV---LVRQFGHSPL 176

Query: 176 QATTAVVSVLKKEKNIADDSQI 197
           +A   V   L+++ +I+   ++
Sbjct: 177 EAQRLVSEALRRQPSISSMEEL 198


>gi|15829128|ref|NP_326488.1| Holliday junction DNA helicase motor protein [Mycoplasma pulmonis
           UAB CTIP]
 gi|20455257|sp|Q98PR2|RUVA_MYCPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|14090072|emb|CAC13830.1| HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycoplasma pulmonis]
          Length = 197

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 85/201 (42%), Gaps = 18/201 (8%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I  + + Y++ +     Y I     T +   +      L++     + Q  L+GF   
Sbjct: 7   GKIIHVNKKYIIFESDSAGYTINI---TRAENFEKDRTLKLYIYELSNEYQKTLYGFTHF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+ G+G R+A+ +L+     ++   I   N + +++ P I++K   +I+ 
Sbjct: 64  KERVLFEDLISINGIGPRIALILLN-DGWEKIASLIANGNWETLSRYPYINVKNCHQIIF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
           EL+ K              + K++    +      +A   L  LG+ ++Q   A+ S   
Sbjct: 123 ELQNKWAKF----------LEKDEKVPSANIQNISDATETLKMLGFKREQIKYALESANL 172

Query: 187 KEKNIADDSQIIRLALRAISC 207
           ++    D   ++  A++ IS 
Sbjct: 173 QD----DVETLVENAIKKIST 189


>gi|313678674|ref|YP_004056414.1| Holliday junction DNA helicase [Mycoplasma bovis PG45]
 gi|312950114|gb|ADR24709.1| Holliday junction DNA helicase [Mycoplasma bovis PG45]
          Length = 198

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 17/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G I   +   ++ + QG+ Y +  P         +   C L++     + Q   
Sbjct: 1   MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVDVKQKCKLYLFEIKNEYQYAT 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +R  F+ L S+ G+G + A  +L+     ++   I   N + + +IP ++ ++
Sbjct: 58  YAFKDFKERLLFVDLISLNGIGPKAAFNILN-FGFEKVSALIAEGNVEALIKIPYLNPRM 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ EL+ K   +            KE A I    +    A   L  LG+   Q   A
Sbjct: 117 ARLIVAELQAKWSKM---------ISPKEVAKISVSTNTISEAKETLKMLGFKTKQIDNA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +  V   +    D  ++I  A++ IS 
Sbjct: 168 LAKVSTTD----DIEKMIEEAIKLIST 190


>gi|297520077|ref|ZP_06938463.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50]
          Length = 108

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 96  TELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS 155
            + V ++  +    + ++PGI  K A R++ E+K +   L   +    + +        +
Sbjct: 1   QQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPA 60

Query: 156 MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                  A++ALV LGY   +A+  V  + + +   A    +IR ALRA
Sbjct: 61  TNDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSETLIREALRA 106


>gi|304373060|ref|YP_003856269.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           hyorhinis HUB-1]
 gi|304309251|gb|ADM21731.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           hyorhinis HUB-1]
          Length = 213

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 90/202 (44%), Gaps = 12/202 (5%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++   V ++IY P        +  +   +++  +  +     +GF + 
Sbjct: 7   GKIVSKSKNYLILEQNYVGHLIYVPNIDRF---EKDESKKIYIYKYENEYSKTTYGFENF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L SVQG+G + A+ +L++      +  I   + K I++ P +++K A +I+ 
Sbjct: 64  RERILFEDLISVQGIGPKTAIAILNQ-GWETAMSYIADGDWKRISEFPYLNVKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMS---CVNKEQAHICSMPSFAINAIS-----ALVNLGYGQDQAT 178
           E + K I +    Q+ ++    +N E+    S  +   + I+      L  LG+ + Q  
Sbjct: 123 EFQNKYIKIFQNYQKTLNKDKVINVEEEVTFSSKTVLEDKIAKELEDTLKILGFQKKQIN 182

Query: 179 TAVVSVLKKEKNIADDSQIIRL 200
            A+  V           + I+L
Sbjct: 183 YALSKVQANNDFELLVEEAIKL 204


>gi|291320151|ref|YP_003515412.1| Holliday junction DNA helicase RuvA [Mycoplasma agalactiae]
 gi|290752483|emb|CBH40455.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae]
          Length = 198

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 17/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G I   +   ++ + QG+ Y +  P        +I   C L++     + Q   
Sbjct: 1   MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVEIKQKCKLYLFEIKNEYQYAT 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +R  F+ L S+ G+G R A  +L+     ++   I   N++ + +IP ++ ++
Sbjct: 58  YAFKDFKERLLFVDLISLNGIGPRAAFNILN-FGFEKVAALIAEGNAEALIEIPYLNPRM 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ EL+ K   +            K+ A I    +        L  LG+   Q   A
Sbjct: 117 ARLIVAELQAKWSKM---------ISPKDAAKINETTNALSEVKETLKMLGFKTKQIDGA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +  +     +  D  ++I  A++ +S 
Sbjct: 168 LSKI----SSTDDVEKMIEEAIKLMST 190


>gi|330723322|gb|AEC45692.1| Holliday junction DNA helicase RuvA [Mycoplasma hyorhinis MCLD]
          Length = 213

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 90/202 (44%), Gaps = 12/202 (5%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++   V ++IY P        +  +   +++  +  +     +GF + 
Sbjct: 7   GKIVSKSKNYLILEQNYVGHLIYVPNIDRF---EKDESKKIYIYKYENEYSKTTYGFENF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L SVQG+G + A+ +L++      +  I   + K I++ P +++K A +I+ 
Sbjct: 64  RERILFEDLISVQGIGPKTAIAILNQ-GWETAMSYIADGDWKKISEFPYLNVKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMS---CVNKEQAHICSMPSFAINAIS-----ALVNLGYGQDQAT 178
           E + K I +    Q+ ++    +N E+    S  +   + I+      L  LG+ + Q  
Sbjct: 123 EFQNKYIKIFQNYQKTLNKDKVINVEEEVTFSSKTVLEDKIAKELEDTLKILGFQKKQIN 182

Query: 179 TAVVSVLKKEKNIADDSQIIRL 200
            A+  V           + I+L
Sbjct: 183 YALSKVQANNDFELLVEEAIKL 204


>gi|254994714|ref|ZP_05276904.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Mississippi]
          Length = 138

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 18/148 (12%)

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF +  ++    +L  V GV  + AM +L  +T  ++  +I+ ++   + ++ G+  
Sbjct: 8   QLYGFANREEQNCMRMLIKVSGVNYKTAMAILDVLTPEQVFSAIVSEDRAAL-KVGGVGE 66

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ SRI++EL  +                 E     +       A++AL++LGY +  A 
Sbjct: 67  KLISRIISELTPQVQKF-------------ELNRFAATTRTDSEAVAALLSLGYERTAAL 113

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+  V             +R AL  +S
Sbjct: 114 GALQKV----GVCDSTEDAVRRALLELS 137


>gi|224540664|ref|ZP_03681203.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224517736|gb|EEF86841.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 82

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI  I+G +  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1  MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61 FGFLSDLDRQWFMLLQSVQGVG 82
          +GF    +R+ F+LL SV G+G
Sbjct: 60 YGFADKQERELFLLLISVSGIG 81


>gi|308189833|ref|YP_003922764.1| Holliday junction DNA helicase [Mycoplasma fermentans JER]
 gi|319777048|ref|YP_004136699.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|238809832|dbj|BAH69622.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624575|gb|ADN68880.1| Holliday junction DNA helicase [Mycoplasma fermentans JER]
 gi|318038123|gb|ADV34322.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
          Length = 200

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 19/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+    G I       ++ + QGV Y I  P        +      L++          L
Sbjct: 1   MVLYRIGEIVYKNNQNLIFESQGVGYSIIFPDHAR---VEAKQKMKLYLYEIRNDYTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  FM L ++ G+G RVA  +L++    ++   I L     + +IP I+ +I
Sbjct: 58  YGFKDFKERLLFMDLINLNGIGPRVAFNILNQ-GWEKVASLIALGKVDHLIEIPYINPRI 116

Query: 121 ASRIMT-ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+  EL+ K   +++          ++        +    A   L  LG+   Q  +
Sbjct: 117 A-RIVVGELQDKWAKITN---------TQDAQKQVKNSNLLSEAKETLKMLGFKAAQIDS 166

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  V   +    D   +I  A++ IS
Sbjct: 167 ALTKVELNQ----DVESMIEEAIKFIS 189


>gi|148377489|ref|YP_001256365.1| Holliday junction DNA helicase motor protein [Mycoplasma agalactiae
           PG2]
 gi|229560106|sp|A5IY12|RUVA_MYCAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148291535|emb|CAL58921.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae PG2]
          Length = 198

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 17/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G I   +   ++ + QG+ Y +  P        +I   C L++     + Q   
Sbjct: 1   MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVEIKQKCKLYLFEIKNEYQYAT 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +R  F+ L S+ G+G R A  +L+     ++V  I   N++ + +IP ++ ++
Sbjct: 58  YAFKDFKERLLFVDLISLNGIGPRAAFNILN-FGFEKVVALIAEGNAEALIEIPYLNPRM 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ EL+ K   +            K+ A I    +        L  +G+   Q   A
Sbjct: 117 ARLIVAELQAKWSKM---------ISPKDAAKINETTNTLSEVKETLKMVGFKTKQIDGA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           +  +     +  D  ++I  A++ +S 
Sbjct: 168 LSKI----SSTDDVEKMIEEAIKLMST 190


>gi|284931638|gb|ADC31576.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           gallisepticum str. F]
          Length = 226

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 19/221 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57
           MI  +   IE +    +L       Y +       S   +  +   +F+       + + 
Sbjct: 1   MITSVYAKIEYVTNTKMLFVANNWGYWVNVKPN--SGFSRTDNNVLVFLHELTFLAQNNA 58

Query: 58  I--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           I   L+ F S  +++WF  L ++ G+G + AM V+      E++  I   +   + ++  
Sbjct: 59  INKELYAFKSLKEKEWFKTLLTINGIGPKTAMNVM-VNKQEEVLTLIKNNDLNGLLRLEN 117

Query: 116 ISMKIASRIMTE-------LKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAI 164
           I+ K+A+ ++         LK + +    V  Q    +    +K+      +    I AI
Sbjct: 118 INKKVATMLLASDIASKHYLKNQIVVSDKVEPQIDDDEKIDDSKDLNDDELLSEIVIEAI 177

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             L++LGY Q+Q  TA+  +  K ++I D + ++ + ++ I
Sbjct: 178 DCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218


>gi|31544808|ref|NP_853386.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           gallisepticum str. R(low)]
 gi|81572800|sp|Q7NAN2|RUVA_MYCGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|31541654|gb|AAP56954.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930882|gb|ADC30821.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           gallisepticum str. R(high)]
          Length = 226

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 19/221 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57
           MI  +   IE +    +L       Y +       S   +  +   +F+       + + 
Sbjct: 1   MITSVYAKIEYVTNTKMLFVANNWGYWVNVKPN--SGFSRTDNNVLVFLHELTFLAQNNA 58

Query: 58  I--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           I   L+ F S  +++WF  L ++ G+G + AM V+      E++  I   +   + ++  
Sbjct: 59  INKELYAFKSLKEKEWFKALLTINGIGPKTAMNVM-VNKQEEVLTLIKNNDLNGLLRLEN 117

Query: 116 ISMKIASRIMTE-------LKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAI 164
           I+ K+A+ ++         LK + +    V  Q    +    +K+      +    I AI
Sbjct: 118 INKKVATMLLASDIASKHYLKNQIVVSDKVEPQIDDDEKIDDSKDLNDDELLSEIVIEAI 177

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             L++LGY Q+Q  TA+  +  K ++I D + ++ + ++ I
Sbjct: 178 DCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218


>gi|113474071|ref|YP_720132.1| DNA recombination protein RuvA [Trichodesmium erythraeum IMS101]
 gi|110165119|gb|ABG49659.1| DNA recombination protein, RuvA [Trichodesmium erythraeum IMS101]
          Length = 109

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 1  MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
          MI  +KG +  +Y+       V+++V  V Y +    R    L + G    +F    MR+
Sbjct: 1  MINYLKGKVANVYKGSGFRMTVILEVNQVGYELQVLPRLTQSLQE-GKQVQVFTHQQMRE 59

Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI 93
          DQ+ L+GF +  +R  F  L SV G+GA++A+ +L  +
Sbjct: 60 DQMVLYGFGTSAERDLFRQLVSVSGIGAQLAIALLDTL 97


>gi|240047398|ref|YP_002960786.1| Holliday junction DNA helicase RuvA [Mycoplasma conjunctivae
           HRC/581]
 gi|239984970|emb|CAT04963.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           conjunctivae]
          Length = 217

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 21/217 (9%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I KI G I    ++Y++++  G  Y+IY P   +    +  +   ++V           +
Sbjct: 3   IYKI-GKIVSKNKNYLILEQAGNGYLIYTPN--IERFNR-DEKRKIYVYEFENDYSKITY 58

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L S+QG+G + AM  L+ I   ++++ I   + K +++I  IS + A
Sbjct: 59  GFDNFKERILFEDLISIQGIGPKTAMIALN-IGWQKIIDYIAAGDWKSLSKIQYISDRNA 117

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------------FAINAISALVN 169
            +I+ E + K   L    +   +           +               AI     L  
Sbjct: 118 KQIIFEFQKKYTKLIESAKNQTTTQENNTKQADEVIDEHLMQKTLLEQKTAIELEDTLKI 177

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           LG+ + Q   A+ +V   E        +I  A++ IS
Sbjct: 178 LGFQKRQINYALANVEPTE----SFEHLIEEAIKLIS 210


>gi|308190042|ref|YP_003922973.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER]
 gi|307624784|gb|ADN69089.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER]
          Length = 195

 Score =  110 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P      L        +++          L
Sbjct: 1   MVLYRKGKIVYKDGKNLIFESDNVGYYVMFPDNKRIKL---NQEIKMYLYEIKNDFTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ FM L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ ++
Sbjct: 58  YGFKELEERKLFMDLINLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRL 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ EL+ K   +++          ++        +    A   L  LG+   Q  +A
Sbjct: 117 ARIIVEELQDKWAKITN---------TQDAQKQVKNSNLLSEAKEILKMLGFKAAQIDSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V   +    D   +I  A++ +
Sbjct: 168 LTKVELNQ----DVESMIEEAIKLM 188


>gi|257462985|ref|ZP_05627389.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D12]
 gi|317060603|ref|ZP_07925088.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12]
 gi|313686279|gb|EFS23114.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12]
          Length = 101

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +     +Y  +DV GV Y +Y  +R    + ++G    +++  H+R+ + +L
Sbjct: 1   MFEYLKGFVSYKKPEYFALDVHGVAYRVYISLRMYEKI-ELGQEYQIYIYNHIREGEYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102
            GFL + +R+ F LL SV+G+G  +A+  LS  +  +LV  I
Sbjct: 60  IGFLEEKERKLFELLLSVKGIGISLALAALSTYSVEQLVAYI 101


>gi|161621805|ref|YP_015967.2| Holliday junction DNA helicase motor protein [Mycoplasma mobile
           163K]
          Length = 201

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 20/207 (9%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQIR 59
           I KI G I    ++Y L++     ++IY      + L K        +F+  H       
Sbjct: 3   IYKI-GKIVSFGKNYFLLESNYEGFLIYA-----AELEKFEKDVVTKVFIYKHENAYSKT 56

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F+ L S+ G+G + A+  L      E++  I   + + ++++P + +K
Sbjct: 57  LYGFKTFKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLK 115

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I  E + K  +L       +   N       S         + L  LG+  +Q   
Sbjct: 116 SAKQICFEFQSKYANL-------LEKENSGNLKFESKTKKITELSNTLKTLGFKTNQINY 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ ++  K     D  +++  +++ I+
Sbjct: 169 AISNINDKN----DIEEMLEESIQLIA 191


>gi|47458434|gb|AAT27756.1| holliday junction DNA helicase RuvA [Mycoplasma mobile 163K]
          Length = 204

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 20/207 (9%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQIR 59
           I KI G I    ++Y L++     ++IY      + L K        +F+  H       
Sbjct: 6   IYKI-GKIVSFGKNYFLLESNYEGFLIYA-----AELEKFEKDVVTKVFIYKHENAYSKT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F+ L S+ G+G + A+  L      E++  I   + + ++++P + +K
Sbjct: 60  LYGFKTFKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I  E + K  +L       +   N       S         + L  LG+  +Q   
Sbjct: 119 SAKQICFEFQSKYANL-------LEKENSGNLKFESKTKKITELSNTLKTLGFKTNQINY 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ ++  K     D  +++  +++ I+
Sbjct: 172 AISNINDKN----DIEEMLEESIQLIA 194


>gi|213421561|ref|ZP_03354627.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 105

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159
            ++  +    + ++PGI  K A R++ E+K +   L   +      +        +    
Sbjct: 2   NAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDA 61

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
              A++ALV LGY   +A+  V  + + +   A    +IR ALRA
Sbjct: 62  EQEAVAALVALGYKPQEASRMVSKIARPD---ASSETLIRDALRA 103


>gi|69250107|ref|ZP_00605099.1| RuvA, C-terminal [Enterococcus faecium DO]
 gi|68194009|gb|EAN08566.1| RuvA, C-terminal [Enterococcus faecium DO]
          Length = 125

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 84  RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDM 143
           +V + +++    + L++++   +   + + PG+  K A +++ +LKGK   LS      +
Sbjct: 8   KVPLAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFGELSIDTPFSL 67

Query: 144 SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
                 +            A+ AL  LGY   +       +  KE +     + +R AL+
Sbjct: 68  FDEANTKDATA-----LSEAMEALSALGYSDREIKRVEKQL--KEVDNQTTDEYLRQALK 120

Query: 204 AI 205
            +
Sbjct: 121 LM 122


>gi|13358012|ref|NP_078286.1| holliday-junction binding protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762222|ref|YP_001752534.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|171920473|ref|ZP_02690444.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
 gi|183508627|ref|ZP_02689294.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|186701725|ref|ZP_02971417.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|20455274|sp|Q9PQ41|RUVA_UREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045777|sp|B1AJ90|RUVA_UREP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|11356864|pir||G82889 holliday-junction binding protein UU449 [imported] - Ureaplasma
           urealyticum
 gi|6899441|gb|AAF30861.1|AE002141_7 holliday-junction binding protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827799|gb|ACA33061.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|171902931|gb|EDT49220.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
 gi|182676086|gb|EDT87991.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|186700992|gb|EDU19274.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 195

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 27/205 (13%)

Query: 8   NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQDQIR--LF 61
            +     + V+ +   + Y I  P      L +I  FC L++  ++     ++ I   L+
Sbjct: 7   KVIYANANIVVGEHNFIGYQIRIPKD--YEL-EINKFCKLYLYEYISIMPNKNLIIKDLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F+ L S+  +G + A+ +L +     ++++I  +N   +  I GI+ + A
Sbjct: 64  GFRTYNERLLFIDLISINSIGPKTAINIL-KYDIDTIIDAIATKNIDYLITIKGINQRNA 122

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           + I  +L  K I+                  +    ++A      L NLGY +     A+
Sbjct: 123 NLICDQLNYKYIN-----------------KVNDKNNWAKELSIGLENLGYTKKDIEYAI 165

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
             V    +   D S+II  A++ IS
Sbjct: 166 TKVKINSQQDIDISEIISSAIKEIS 190


>gi|224540665|ref|ZP_03681204.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517737|gb|EEF86842.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 115

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
           +LS ++  ELV  I  +N+ ++  + GI +K A R++ +LK K  + ++     +  +  
Sbjct: 2   ILSALSPAELVNVISTENANLLKTVKGIGLKTAQRVIVDLKDKIKTGAASAGSTIGSLGG 61

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             +   +       AI+AL  LG+ Q  +   V+++LK+E + A   Q+I+LAL+ +
Sbjct: 62  MLS--AANAQVQEEAIAALTMLGFAQAPSQKVVLAILKEEPD-APVEQVIKLALKRL 115


>gi|33322999|gb|AAQ07236.1|AF496544_1 holliday junction DNA helicase [Lactobacillus delbrueckii subsp.
          lactis]
          Length = 83

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++++ L
Sbjct: 1  MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KNGDKARIYVEQVVRENRMTL 57

Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVA 86
          +GF S  D+  F  L  V G+G + A
Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSA 83


>gi|294155532|ref|YP_003559916.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145]
 gi|291599949|gb|ADE19445.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145]
          Length = 201

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 80/196 (40%), Gaps = 15/196 (7%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I       ++++  G  Y+I         L         ++     +    ++GF   
Sbjct: 7   GEIVYKKNKNLILESYGTGYMIQVACADRFELNTKLKMHLAYIYNEFAK-TFSIYGFKDY 65

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++R  F+ L +V G+GA++AM +L     T  +L   +   N + ++++  ++ K A  I
Sbjct: 66  MERILFLDLINVNGIGAKIAMNILDNGWETVADL---VASANYETLSKLNFVNEKNARNI 122

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           +  L+ K   + +V   + +  N          +   +   +L  LG+ + Q + A+  +
Sbjct: 123 ILSLQDKWKKIRNVSNSNETAKN---------INALSDVSESLKMLGFKEKQISYALSKI 173

Query: 185 LKKEKNIADDSQIIRL 200
              E+      Q I+L
Sbjct: 174 KISEQLEDMVEQSIKL 189


>gi|168700081|ref|ZP_02732358.1| probable holliday junction DNA helicase ruvA [Gemmata obscuriglobus
           UQM 2246]
          Length = 247

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 43/240 (17%)

Query: 1   MIGKIKGNIEGL--YEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQ 57
           MI K+ G +      ED V + +    Y I  P      +  + G   T  +  ++  + 
Sbjct: 1   MITKMTGVLTRCRHDEDDVRLQIGPFEYQIMVPEAVRRQIQMRTGHELTFHITEYLEGNS 60

Query: 58  ------IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
                  R  GFL + + ++F L  +V+ +G + A+  ++  +   + ++I  Q++K ++
Sbjct: 61  SGNRFVPRRVGFLHEHELEFFELFCTVEKIGVKKALKAMA-FSVKTIADAISRQDAKWLS 119

Query: 112 QIPGISMKIASRIMTELKGKAISLS---------------------------------SV 138
            +PGI    A +I+T LK K    +                                   
Sbjct: 120 ALPGIGPTTAEQIVTTLKRKVTKFTVLNTPAPVAAPGAEPAPDAVVEEKPSGKKAKSAKK 179

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
              +   +  E     +      +   AL+ LG    +A   + ++L   +      + I
Sbjct: 180 TAAEEPALATEPLVTAADGQLIEDVYQALMGLGLNPLEARAKLDALLTCGQPFRSLQEAI 239


>gi|171920937|ref|ZP_02696104.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|185178954|ref|ZP_02555140.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188024044|ref|ZP_02569578.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188518273|ref|ZP_02555997.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188524367|ref|ZP_02558092.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195867795|ref|ZP_03079795.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273854|ref|ZP_03206388.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209554366|ref|YP_002284876.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225550585|ref|ZP_03771534.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225551217|ref|ZP_03772163.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|254767398|sp|B5ZBT6|RUVA_UREU1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171903169|gb|EDT49458.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|184209229|gb|EDU06272.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188019075|gb|EDU57115.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188998198|gb|EDU67295.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|195660085|gb|EDX53465.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195660492|gb|EDX53749.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198249609|gb|EDY74391.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209541867|gb|ACI60096.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225379032|gb|EEH01397.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|225379739|gb|EEH02101.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 195

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 27/205 (13%)

Query: 8   NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH----MRQDQIR--LF 61
            +     + V+ +   + Y I  P      L ++  FC L++  +      ++ I   L+
Sbjct: 7   KVIYANANVVIGEHNFIGYQIRVPKD--YEL-EVNKFCKLYLYEYASIMPNKNLIIKDLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F+ L S+  +G + A+ +L +     ++++I  ++   +A I G++ + A
Sbjct: 64  GFRTYNERLLFIDLISINSIGPKTAINIL-KYDINLIIDAIATKDVDFLATIKGVNQRSA 122

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           + I  +L  K I+                  +     +A      L NLGY +     A+
Sbjct: 123 NLICDQLNYKYIN-----------------KVSEKNPWAKELSIGLENLGYDKKDIEYAI 165

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
             V    +   D S+II  A++ IS
Sbjct: 166 TKVKVDTQQNIDISEIIGCAIKEIS 190


>gi|144900756|emb|CAM77620.1| Bacterial DNA recombination protein, RuvA [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 75

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI K+KG I+ L +D+ ++DV GV Y+++C  RTL  L ++G    L VETH+R+D I L
Sbjct: 1  MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59

Query: 61 FGFLSDLDRQWFMLL 75
          +GFL   +R WF LL
Sbjct: 60 YGFLEPGERDWFNLL 74


>gi|193216717|ref|YP_001999959.1| Holliday junction DNA helicase RuvA [Mycoplasma arthritidis
           158L3-1]
 gi|254767376|sp|B3PMK3|RUVA_MYCA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193002040|gb|ACF07255.1| Holliday junction DNA helicase motor protein [Mycoplasma
           arthritidis 158L3-1]
          Length = 203

 Score =  100 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G I  +  +Y+++D  G   +IY P  +     K  +   +F+     +     
Sbjct: 1   MIIYKYGKIMHVNTNYLILDHNGEGDLIYAPNISRF---KKDELRKIFISQIENEYTKVT 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F  L  +QG+G + A+ +L+ I    ++  +   N   + +IP +S KI
Sbjct: 58  YGFDNFKELVIFEDLIEIQGLGPKTAISILN-IGWENVINYVATANKGALGKIPYVSSKI 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+ I+   + K       +  D +   K  A   +   F    +  +  LG+ Q Q   A
Sbjct: 117 ANAIIFSYQDKYAKFMKKLTSDEAAKIKVPASSENENKF----LDTMKMLGFKQQQIKFA 172

Query: 181 VVSVLKKEKNIADDSQIIRL 200
           +  +   +         I+L
Sbjct: 173 LDKIELNDDIETCVENAIKL 192


>gi|1361545|pir||F64239 Holliday junction DNA helicase ruvA homolog - Mycoplasma genitalium
          Length = 260

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 18/209 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRT-LSCLGKIGDFCTLFVETHMRQDQI- 58
           MI  I G +  + +  ++++   + Y              +        +   +  +QI 
Sbjct: 56  MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 115

Query: 59  -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
              F F +  +++WF  L  + G+G++ A+ +L+     E+ + I+  N   +  I G++
Sbjct: 116 EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVN 174

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            KIA R +  L           +      N +      +          L +LGY Q + 
Sbjct: 175 NKIA-RALLSL-----------EIFEKSENNKNIKGVQVADGYDELFETLKSLGYKQQEI 222

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+  +  + K   D SQ++   ++ +S
Sbjct: 223 QDALKMI--EVKPDFDISQLVAEVIKLMS 249


>gi|153827627|ref|ZP_01980294.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MZO-2]
 gi|149737899|gb|EDM52804.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MZO-2]
          Length = 66

 Score = 97.8 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1  MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61 FG 62
          +G
Sbjct: 61 YG 62


>gi|108885107|ref|NP_073029.2| Holliday junction DNA helicase RuvA [Mycoplasma genitalium G37]
 gi|2498869|sp|Q49424|RUVA_MYCGE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84626136|gb|AAC71583.2| Holliday junction DNA helicase [Mycoplasma genitalium G37]
 gi|166078725|gb|ABY79343.1| Holliday junction DNA helicase [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 205

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 18/209 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRT-LSCLGKIGDFCTLFVETHMRQDQI- 58
           MI  I G +  + +  ++++   + Y              +        +   +  +QI 
Sbjct: 1   MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 60

Query: 59  -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
              F F +  +++WF  L  + G+G++ A+ +L+     E+ + I+  N   +  I G++
Sbjct: 61  EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVN 119

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            KIA R +  L           +      N +      +          L +LGY Q + 
Sbjct: 120 NKIA-RALLSL-----------EIFEKSENNKNIKGVQVADGYDELFETLKSLGYKQQEI 167

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+  +  + K   D SQ++   ++ +S
Sbjct: 168 QDALKMI--EVKPDFDISQLVAEVIKLMS 194


>gi|71894187|ref|YP_278295.1| Holliday junction DNA helicase motor protein [Mycoplasma synoviae
           53]
 gi|123747949|sp|Q4A6N7|RUVA_MYCS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71850975|gb|AAZ43584.1| holliday junction DNA helicase RuvA [Mycoplasma synoviae 53]
          Length = 198

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 70/192 (36%), Gaps = 14/192 (7%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I     + ++++ +G   ++     +       G+   L++         + +GF + 
Sbjct: 7   GEIVYKNNNNIILESKGEGNLVTICDNSRYS---KGEKLKLYLYEVKNDYIQQTYGFKTF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+  +G + AM +L +     +   I   + K I++I  IS K A  I  
Sbjct: 64  KERLLFTDLISIDKIGPKTAMLILDQ-NWELVANLIAEGDWKEISKINYISDKSAKLICV 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
           ELK K   +          +  ++       +        L  LG+       AV ++  
Sbjct: 123 ELKDKWAKI----------IQNKEVKKFDDITNIKELKQTLNKLGFKASDIDYAVNNISS 172

Query: 187 KEKNIADDSQII 198
            ++      + I
Sbjct: 173 TKELDLMVEESI 184


>gi|297183320|gb|ADI19457.1| holliday junction resolvasome, DNA-binding subunit [uncultured
          bacterium HF0500_16O16]
          Length = 69

 Score = 94.3 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI  ++G +        +IDV GV Y +   + T   L  +G    L   T++R+D++ L
Sbjct: 1  MIDFLRGTLHERTPTRAVIDVGGVGYGVAISLTTYDRLPSVGTEIFLHTYTYVREDRLDL 60

Query: 61 FGFLSDL 67
          +G     
Sbjct: 61 YGIADAE 67


>gi|293363750|ref|ZP_06610492.1| putative Holliday junction DNA helicase RuvA [Mycoplasma
           alligatoris A21JP2]
 gi|292552671|gb|EFF41439.1| putative Holliday junction DNA helicase RuvA [Mycoplasma
           alligatoris A21JP2]
          Length = 201

 Score = 92.0 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 76/202 (37%), Gaps = 20/202 (9%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ--DQIR 59
           I KI G I       ++++  G  + I    +      ++     L++            
Sbjct: 3   IYKI-GEIVYKKNKNIILESYGSGFWIQVANQERF---EVNSKVKLYLADIFSDFTKSFS 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGIS 117
            +GF   ++R  F  L +V G+GA++AM +L     T  +L   I+  + + + ++  ++
Sbjct: 59  TYGFKDYMERVLFFDLINVNGIGAKIAMNILENGWQTVADL---IVEGSVETLTKLNAVN 115

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            KIA  ++   + K + +        +  N    +              L  LG+ + Q 
Sbjct: 116 EKIAKNLILTYQDKWLKIRGAANSKETSKNTINLNELGNS---------LKVLGFKEKQI 166

Query: 178 TTAVVSVLKKEKNIADDSQIIR 199
           + A+  +   +       Q I+
Sbjct: 167 SYALSKIKVTDHLEDMVEQSIK 188


>gi|328471586|gb|EGF42464.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus MTCC
           5462]
          Length = 114

 Score = 91.6 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L SV G+G + A+ +L+ +++  L  +I   + K + + PGI  K A++I+ +LKGK  
Sbjct: 2   QLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQIILDLKGKIT 61

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
           + +      +     + A   +    A+ A+      GY Q  A   +   LK       
Sbjct: 62  TDAQPAAATIMPTADQVAPELADALAALVAL------GYTQR-AVDGITDALKAFDATTT 114


>gi|113474072|ref|YP_720133.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum
           IMS101]
 gi|110165120|gb|ABG49660.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum
           IMS101]
          Length = 119

 Score = 91.2 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
           +LS     +LV++I+  N++V+A+ PG+  K A RI  ELK K            S    
Sbjct: 1   MLSLTELPDLVQAIVGGNTRVLAKTPGVGAKTAERITLELKNKLAEWRQDAGLTTSV--- 57

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206
               +  MP+        L+ LGY   +   ++ +V K      +      IR A+  +S
Sbjct: 58  ---PVGVMPAIQEEVEMTLLALGYTGQEVIQSLQAVSKDANMSKNTNAEDWIREAISWLS 114


>gi|308189841|ref|YP_003922772.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER]
 gi|307624583|gb|ADN68888.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER]
          Length = 145

 Score = 90.9 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P      L        +++          L
Sbjct: 1   MVLYRKGKIVYKDGKNLIFESNNVGYYVMFPDNKRIKL---NQELKMYLYEIKNDFTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ ++
Sbjct: 58  YGFKELEERKLFADLVNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRL 116

Query: 121 ASRIMTELKGKAISLSSVVQQ 141
           A  I+ ELK K  S S  V++
Sbjct: 117 ARIIVEELKEKLSSKSKDVKK 137


>gi|13508274|ref|NP_110224.1| Holliday junction DNA helicase motor protein [Mycoplasma pneumoniae
           M129]
 gi|2498870|sp|P75243|RUVA_MYCPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|1673979|gb|AAB95955.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae M129]
 gi|301633407|gb|ADK86961.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae FH]
          Length = 206

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR-QDQIR 59
           MI  I G I  + +  ++++   + Y         S    +     +F +   R      
Sbjct: 1   MIASIFGKITFVGKRKIIVEANCISYWFNVKENH-SFEKNLEKPRQVFCQIIKRMVTNQI 59

Query: 60  L---FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           L   F F +  +++WF     + G+G++ A+ +L+     E+ + I   N   + ++ G 
Sbjct: 60  LEEGFAFNTLEEKEWFSKFIELNGIGSKTALNLLNNN-LEEMRDYIKNSNYHALTKLTGS 118

Query: 117 SMKIASRIM-TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           + K+A  ++  EL  +                K      +M +        L +LGY   
Sbjct: 119 NSKVARALLALELYDR------------DDGGKRIKPNTAMANDYDEMFDTLKSLGYKPQ 166

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
               A+  +  + K   D S++I   ++ +S
Sbjct: 167 DIQNALSKI--EIKPNFDVSEVIAEVIKLMS 195


>gi|269114958|ref|YP_003302721.1| holliday junction DNA helicase ruvA [Mycoplasma hominis]
 gi|268322583|emb|CAX37318.1| Holliday junction DNA helicase ruvA [Mycoplasma hominis ATCC 23114]
          Length = 206

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 82/196 (41%), Gaps = 7/196 (3%)

Query: 4   KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGF 63
            + G I  +  +Y+++D  G   +IY     +    K  D   +F+   + + +   +GF
Sbjct: 4   YLYGKIMHVNTNYLILDHNGEGELIYVAD--IKRFNK-DDLRKIFIYDVVNEYKKTTYGF 60

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            +  +   F  L S+QG+G + A+ +L+ +    L++ I  ++   + +   +S++IA+ 
Sbjct: 61  ENFKELIIFEDLISLQGLGPKTAISLLN-LGWENLIQLIANEDKDKLCEASYVSLRIANN 119

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183
           I+   K K     S +  +     K +    S+       +     LG+ + Q + A+  
Sbjct: 120 IIFAYKQKYAKFLSKLSDEDLLKIKSKNTSDSLREKFEYTM---RMLGFKKQQISYALEK 176

Query: 184 VLKKEKNIADDSQIIR 199
           +   E         I+
Sbjct: 177 MSITENIEESVENAIK 192


>gi|213022656|ref|ZP_03337103.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 87

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R++ E+K +       +      +        +       A++ALV LGY   +
Sbjct: 1   GKKTAERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQE 60

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A+  V  + + +   A    +IR ALRA
Sbjct: 61  ASRMVSKIARPD---ASSETLIRDALRA 85


>gi|256384343|gb|ACU78913.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|256385175|gb|ACU79744.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|296455994|gb|ADH22229.1| holliday junction DNA helicase RuvA [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 186

 Score = 89.3 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  + + Y+ I+     Y        L  L K+     +++  ++  +  + 
Sbjct: 1   MNDYINGLLHKIDDKYLYIESNNSGYRFLYLKSDLKDL-KLNQNNQVYIAINVIDNVFKY 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L R  F LL ++  +G + A  +L      EL++      +  I Q+ GI    
Sbjct: 60  YGFKNQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGSYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++                      +++     +       I++L  LGY        
Sbjct: 120 A-RLII------------------NSVQKELFNNKISDKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++++            + +  L  +S
Sbjct: 161 IINI----DENMSIEDLTKYVLEQLS 182


>gi|331703541|ref|YP_004400228.1| Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328802096|emb|CBW54250.1| Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 186

 Score = 88.9 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  + + Y+ I+     Y        L  L K+     ++V  ++  +  + 
Sbjct: 1   MNDYINGLLHKIDDKYLYIESNNSGYRFLYLKSDLKDL-KLDQNNQVYVAINVIDNVFKY 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF   L R  F LL ++  +G + A  +L      EL++      +  I Q+ GI    
Sbjct: 60  YGFKDQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGSYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++                      +++     +       I++L  LGY        
Sbjct: 120 A-RLII------------------NSVQKELFNNKISDKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++++        +   + +  L  +S
Sbjct: 161 IINI----DEDMNIEDLTKYVLEQLS 182


>gi|42561075|ref|NP_975526.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|81400587|sp|Q6MT68|RUVA_MYCMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|42492572|emb|CAE77168.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320398|gb|ADK69041.1| putative Holliday junction DNA helicase RuvA [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 186

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  + + Y+ I++    Y        L  L K+     ++V  ++  +  + 
Sbjct: 1   MNDYINGLLHKIDDKYLYIELNNSGYRFLYLKTDLKDL-KLNQNNQVYVAINVIDNVFKY 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L R  F LL ++  +G + A  +L      EL++      +  I Q+ GI    
Sbjct: 60  YGFKNQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGNYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++                      +++     +       I++L  LGY        
Sbjct: 120 A-RLII------------------NSVQKELFNNKISDKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++++        +   + +  L  +S
Sbjct: 161 IINI----DEDMNIEDLTKYVLEQLS 182


>gi|255030240|ref|ZP_05302191.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes LO28]
          Length = 85

 Score = 88.6 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K A +I+ +LKGK
Sbjct: 1   FKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGK 60

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMP 157
              L+ VV  ++  V  E   +  + 
Sbjct: 61  ---LADVVASEIVYVAPENDMVAGLS 83


>gi|291084730|ref|ZP_06541669.2| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 102

 Score = 88.2 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           IG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D  
Sbjct: 46  IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQ 102


>gi|254775923|ref|ZP_05217439.1| Holliday junction DNA helicase RuvA [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 68

 Score = 88.2 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI  ++G +  +  D+ +I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1  MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59

Query: 61 FGFLSDLDR 69
          +GF     R
Sbjct: 60 YGFTDAETR 68


>gi|207110462|ref|ZP_03244624.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 102

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141
           G R+A+ +LS  +  E    I  +  K + Q+PGI  K+A +IM +L G  I        
Sbjct: 1   GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQ------- 53

Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201
                                   AL +LG+   +    +  VLK  K        I+ A
Sbjct: 54  ------------DENKPARNEVFLALESLGFKSAE----INKVLKTLKPHLSIEAAIKEA 97

Query: 202 LRAI 205
           L+ +
Sbjct: 98  LQQL 101


>gi|53987370|gb|AAV27571.1| branch migration of holliday structures; repair [Mycoplasma
           hyopneumoniae 232]
          Length = 154

 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ E + 
Sbjct: 1   MFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQK 59

Query: 131 KAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNLGYGQ 174
           K    +   +      N E            A I    S   +  +A     L  LG+  
Sbjct: 60  KYERFNENHKNQTEETNPETQEKELEKEDDLADITIQKSNLEDKTAANLEDTLKMLGFKP 119

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            Q   A+  V   E    +   +I  A++ IS
Sbjct: 120 RQIDYALTKVEPNE----NFENLIENAIKIIS 147


>gi|319776965|ref|YP_004136616.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|319777203|ref|YP_004136854.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|318038040|gb|ADV34239.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
 gi|318038278|gb|ADV34477.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
          Length = 145

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P        K+     + +          L
Sbjct: 1   MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDN---KSIKLNQELKMCLYEIKNDFTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ +I
Sbjct: 58  YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 116

Query: 121 ASRIMTELKGKAISLSSVVQQ 141
           A  I+ ELK K  S S  V++
Sbjct: 117 ARIIVEELKEKLSSKSKDVKK 137


>gi|330936718|gb|EGH40905.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 83

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 2   AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 60

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 61  VSAIKEKDLSSAD---LIRRALKGM 82


>gi|319776838|ref|YP_004136489.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|318037913|gb|ADV34112.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
          Length = 145

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 4/141 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P      L        + +          L
Sbjct: 1   MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDNKRIKL---NQELKMCLYEIKNDFTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ +I
Sbjct: 58  YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 116

Query: 121 ASRIMTELKGKAISLSSVVQQ 141
           A  I+ ELK K  S S  V++
Sbjct: 117 ARIIVEELKEKLSSKSKDVKK 137


>gi|83319351|ref|YP_424403.1| Holliday junction DNA helicase ruvA, putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|123767572|sp|Q2SS60|RUVA_MYCCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83283237|gb|ABC01169.1| Holliday junction DNA helicase ruvA, putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 186

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 80/206 (38%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  + + ++ +++  + Y  Y  +++     K+ +   +++  ++  +  + 
Sbjct: 1   MNDYINGFLYKIDDKFLYLELNYLGYR-YLYLKSDLKNFKLNENNKVYIAINVIDNHFKY 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L R  F +L ++  +G + A  +L   +  EL++      +  I Q+ GI    
Sbjct: 60  YGFFNQLVRDLFEILININTIGEKTAFLILENYSYQELIDIFKNGKTDKILQLKGIGNYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++                      +++     +       I++L  LGY        
Sbjct: 120 A-RLII------------------NSVQKELFNNKISEKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +++V           ++ +  L  +S
Sbjct: 161 IINV----DEDLTIDELTKYVLEKLS 182


>gi|238809746|dbj|BAH69536.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 154

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 4/141 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P      L        + +          L
Sbjct: 10  MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDNKRIKL---NQELKMCLYEIKNDFTWSL 66

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ +I
Sbjct: 67  YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 125

Query: 121 ASRIMTELKGKAISLSSVVQQ 141
           A  I+ ELK K  S S  V++
Sbjct: 126 ARIIVEELKEKLSSKSKDVKK 146


>gi|169836512|ref|ZP_02869700.1| Holliday junction DNA helicase RuvA [candidate division TM7
           single-cell isolate TM7a]
          Length = 76

 Score = 82.0 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 41/70 (58%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105
            +   T++++D I L+GF +  +R+ F  L S+ GVG ++A+ +LS     E++E +   
Sbjct: 5   KIIYFTNVKEDDISLYGFKTQNERELFKALISISGVGPKLAIAILSTFNMREIIEIVTED 64

Query: 106 NSKVIAQIPG 115
            SK++ +  G
Sbjct: 65  ESKILQEFQG 74


>gi|206895983|ref|YP_002247234.1| holliday junction ATP-dependent DNA helicase RuvA, putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738600|gb|ACI17678.1| holliday junction ATP-dependent DNA helicase RuvA, putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 182

 Score = 82.0 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 23/161 (14%)

Query: 48  FVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS 107
           ++      + IR+F F +  +   F +L++V+GVG   A  +LS     +L+  I   + 
Sbjct: 40  YLFFVSFDNDIRVFVFSNKEEFGLFQVLKNVKGVGNIKASRILSLYDVQQLLNMIKAGDE 99

Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167
             +A +PGI  + A RI+ EL G+          D                  +  ++A 
Sbjct: 100 HELALLPGIGERTAKRIVAELSGRLTHTRHDFDNDF-----------------MEVVNAA 142

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206
            +LGY ++     V  +L       D      +R  +R ++
Sbjct: 143 CDLGYERN----VVTELLNGSSEWRDKTLEDALRWVIRELN 179


>gi|313665319|ref|YP_004047190.1| Holliday junction DNA helicase RuvA [Mycoplasma leachii PG50]
 gi|312949212|gb|ADR23808.1| putative Holliday junction DNA helicase RuvA [Mycoplasma leachii
           PG50]
          Length = 186

 Score = 81.6 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 78/206 (37%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I   +  + + ++ +++  + Y      R L    K+ +   +++ T++  +  + 
Sbjct: 1   MNDYINAFLHKIDDKFLYLELNNLGYRYLYLKRDLKNF-KLSENNKIYIATNVIDNLFKC 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L R  F +L ++  +G + A  +L   +  EL++      +  I Q+ GI    
Sbjct: 60  YGFYNQLVRDLFEILININTIGEKTAFLILENYSYEELIDIFKNAKTDKILQLKGIGSYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++                      +++     +       I++L  LGY        
Sbjct: 120 A-RLII------------------NSVQKELFNNKISEKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++++           ++ +  L  +S
Sbjct: 161 IINI----DEDLTIDELTKYVLEKLS 182


>gi|218508888|ref|ZP_03506766.1| Holliday junction DNA helicase RuvA [Rhizobium etli Brasil 5]
          Length = 55

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
          MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+
Sbjct: 1  MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVRE 55


>gi|325973630|ref|YP_004250694.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis
           str. Illinois]
 gi|325990082|ref|YP_004249781.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis
           KI3806]
 gi|323575167|emb|CBZ40829.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis]
 gi|323652232|gb|ADX98314.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis
           str. Illinois]
          Length = 206

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI-- 58
           M   +K  I  ++++Y++ +  G  Y I     T S   K  +   ++V    + D    
Sbjct: 1   MY-YLKCQIISVHKNYLIAESNGKGYKINFAD-TYSI--KEQEEHLIYVFREFKLDTKNQ 56

Query: 59  ---RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
              +LFGFLS+ + + F  L +++G+G + A  +L+      +      +    +A++ G
Sbjct: 57  ITSQLFGFLSEKEFELFNSLLAIKGIGCKTAQAILTN-DWNMMYFLAEREERLKLAELRG 115

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            ++KIA+  +  +K    SL +   +  S    +              IS+L+ +GY  D
Sbjct: 116 FNLKIANLFIYSIKN-MKSLKNSFNKHSSSSYSDSKECK-----EKEVISSLIKIGYKFD 169

Query: 176 QATTAVVSVLKKEKNIADD-SQIIRLALRAIS 206
               A+  + + +  + +D + +I   L+ IS
Sbjct: 170 DIKRALDIIRESDTELKNDFNSLINECLKTIS 201


>gi|331668555|ref|ZP_08369403.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli
           TA271]
 gi|331063749|gb|EGI35660.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli
           TA271]
          Length = 80

 Score = 75.8 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183
           ++ E+K +   L   +    + +        +       A++ALV LGY   +A+  V  
Sbjct: 1   MIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSK 60

Query: 184 VLKKEKNIADDSQIIRLALRA 204
           + + +   A    +IR ALRA
Sbjct: 61  IARPD---ASSETLIREALRA 78


>gi|50365239|ref|YP_053664.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1]
 gi|50363795|gb|AAT75780.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1]
          Length = 182

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 24/185 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVC-YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   +  +I    ++Y+ ++ Q    Y  Y          K      LF+  H  + +  
Sbjct: 1   MKDYLVCDINSKDDNYLYVEYQNKGEYFSYLTKDNF----KNEKNIKLFIVDHNTEFENV 56

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
              F S  +R  F  L  ++ VG + +  +L+  +  E ++ I   + + +A++ GI   
Sbjct: 57  EIVFRSRDERNLFKELVKIKTVGLKTSFYLLNNFSFEEFIKMIEEYDIEKLAKLKGIGNY 116

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I+ EL+                          +       I++LV LG+       
Sbjct: 117 TAKLIIEELQKHFFK-------------------NKITQKKEKIITSLVKLGFSYKTIMK 157

Query: 180 AVVSV 184
            + +V
Sbjct: 158 NIANV 162


>gi|312969901|ref|ZP_07784084.1| holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           1827-70]
 gi|310338186|gb|EFQ03275.1| holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           1827-70]
          Length = 76

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           +K +   L   +    + +        +       A++ALV LGY   +A+  V  + + 
Sbjct: 1   MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARP 60

Query: 188 EKNIADDSQIIRLALRA 204
           +   A    +IR ALRA
Sbjct: 61  D---ASSETLIREALRA 74


>gi|323165016|gb|EFZ50806.1| ruvA, C-terminal domain protein [Shigella sonnei 53G]
          Length = 76

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           +K +   L   +    + +        +       A++ALV LGY   +A+  V  + + 
Sbjct: 1   MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIART 60

Query: 188 EKNIADDSQIIRLALRA 204
           +   A    +IR ALRA
Sbjct: 61  D---ASSETLIREALRA 74


>gi|332756761|gb|EGJ87108.1| ruvA, C-terminal domain protein [Shigella flexneri 4343-70]
          Length = 76

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           +K +   L   +    + +        +       A++ALV LGY   +A+  V  + + 
Sbjct: 1   MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARP 60

Query: 188 EKNIADDSQIIRLALRA 204
           +        +IR ALRA
Sbjct: 61  D---TSSETLIREALRA 74


>gi|289812335|ref|ZP_06542964.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 47

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 24/45 (53%)

Query: 93  ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           ++A + V ++  +    + ++PGI  K A R++ E+K +   L  
Sbjct: 1   MSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHG 45


>gi|145628662|ref|ZP_01784462.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
 gi|144979132|gb|EDJ88818.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
          Length = 81

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 124 IMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           ++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A   V 
Sbjct: 1   MLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEKMVK 60

Query: 183 SVLKKEKNIADDSQIIRLALRA 204
            V K E       Q+IR AL+A
Sbjct: 61  RVAKPE---LTSEQVIREALKA 79


>gi|308187173|ref|YP_003931304.1| hypothetical protein Pvag_1667 [Pantoea vagans C9-1]
 gi|308057683|gb|ADO09855.1| hypothetical protein Pvag_1667 [Pantoea vagans C9-1]
          Length = 36

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL 35
          MIG+++GNI       VL++  GV Y IY P+   
Sbjct: 1  MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCF 35


>gi|330896129|gb|EGH28350.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 43

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 3/45 (6%)

Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +A+SAL++LGY   +A+ AV ++ +K+ + AD   +IR AL+ +
Sbjct: 1   SDAVSALISLGYKPQEASKAVSAIKEKDLSSAD---LIRRALKGM 42


>gi|207110212|ref|ZP_03244374.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 77

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +R+D   L
Sbjct: 1  MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLEAGQKVRLKILQVIREDAHLL 59

Query: 61 FGFLSDLDRQWFMLLQSV 78
          +GFL + ++  F  L  +
Sbjct: 60 YGFLEESEKILFERLLKI 77


>gi|197303404|ref|ZP_03168443.1| hypothetical protein RUMLAC_02126 [Ruminococcus lactaris ATCC
           29176]
 gi|197297402|gb|EDY31963.1| hypothetical protein RUMLAC_02126 [Ruminococcus lactaris ATCC
           29176]
          Length = 513

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  Y P+   + L +IG    L  E  + Q    L  +GF +      ++  F  L  
Sbjct: 337 VFYSAYIPLNEEAVLPQIGTPPPLLREHRLYQADWLLRFYGFQAGELLSPEKPDFNEL-- 394

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
              V  +   A+  L +         +   +  V+ ++PGI  K A RI+
Sbjct: 395 ---VDPKCDWALRHLDQFPVE-----VGTADYAVLLRVPGIGPKSAGRIV 436


>gi|153855718|ref|ZP_01996732.1| hypothetical protein DORLON_02750 [Dorea longicatena DSM 13814]
 gi|149751941|gb|EDM61872.1| hypothetical protein DORLON_02750 [Dorea longicatena DSM 13814]
          Length = 508

 Score = 55.0 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGF----LSDLDRQWFMLLQS 77
           V Y  Y P+     L  +G    L  E  + Q    L  +GF    L   ++  F  L  
Sbjct: 332 VFYSAYIPLNEDDALPGLGTPTPLLREHRLYQADWLLRFYGFQAGELLSEEKPDFNELID 391

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
                 +   A+  L +         I   +   + ++PGI  K ASRI
Sbjct: 392 -----PKCDWALRHLEQFPVE-----IETASYARLLRVPGIGPKSASRI 430


>gi|2160258|dbj|BAA01034.1| RuvA [Escherichia coli]
          Length = 29

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIY 29
          MIG+++G I       VLI+V GV Y ++
Sbjct: 1  MIGRLRGIIIEKQPPLVLIEVGGVGYEVH 29


>gi|2078399|gb|AAB54026.1| unknown [Mycobacterium tuberculosis]
          Length = 94

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPI 32
          MI  ++G +  +  D+V+I+  GV Y +    
Sbjct: 6  MIASVRGEVLEVALDHVVIEAAGVGYRVNATP 37


>gi|331002621|ref|ZP_08326137.1| hypothetical protein HMPREF0491_00999 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408349|gb|EGG87825.1| hypothetical protein HMPREF0491_00999 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 476

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 20/111 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLF--VETHMRQDQIRLFGF-----LSDLDRQWFMLLQ 76
           V Y  Y P+   S L   G    L      +     IR +GF     LS  +   F    
Sbjct: 301 VFYSAYIPVNEDSSLPNPGTAVPLLREHRLYQADWLIRFYGFNARELLSKEEPD-FNTYI 359

Query: 77  SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                  +   A+  L           +   +   + ++PGI  K A RI+
Sbjct: 360 D-----PKCNWAVKHLEYFPVE-----VQTADISRLLRVPGIGPKAAKRIV 400


>gi|218961104|ref|YP_001740879.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729761|emb|CAO80673.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas
           acidaminovorans]
          Length = 601

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 15/105 (14%)

Query: 27  IIYCPIRTLSC-LGKIGDFCTLFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQ 79
            ++ P    S  L +      L +  ++R +  R   F           R     L+S+ 
Sbjct: 498 EVFVPGNEQSIILPRSSSALRLLI--NIRDEAHR---FALSLHRKRRSRRTLESELESIS 552

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           G+G +    +L  + +   VE+I   N + +++I GI  KIA +I
Sbjct: 553 GIGEKNKFLLLKELGS---VENIANANRETLSKIKGIGPKIAEKI 594


>gi|21227489|ref|NP_633411.1| Hef nuclease [Methanosarcina mazei Go1]
 gi|20905864|gb|AAM31083.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
           Go1]
          Length = 864

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTE 127
           L+ S+  +G + A  +LS   +   VE+++  + + + ++  I  K A+RI  + E
Sbjct: 807 LISSISNIGPKAARNLLSYFGS---VEAVMRADIEELKKVKQIGPKTAARIREVLE 859


>gi|149918455|ref|ZP_01906945.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1]
 gi|149820755|gb|EDM80165.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1]
          Length = 715

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 15/111 (13%)

Query: 27  IIYCP-IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQ 79
            ++ P  R    L        L++ T +R +  R   F           R     L  ++
Sbjct: 612 RVFVPGARDAIALAHGSSE--LYLMTRLRDEAHR---FAITHHRKRRGKRALTSTLDGIK 666

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           GVG      +L        V++I   +   +A++ G+  K+A +I   L G
Sbjct: 667 GVGPATKKALLRHFGT---VKAIRAADVDALAEVKGVGPKLAEQIHASLSG 714


>gi|226325056|ref|ZP_03800574.1| hypothetical protein COPCOM_02848 [Coprococcus comes ATCC 27758]
 gi|225206404|gb|EEG88758.1| hypothetical protein COPCOM_02848 [Coprococcus comes ATCC 27758]
          Length = 506

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  Y P+     L +IG    L  E  + Q    L  +GF +D     ++  F  L  
Sbjct: 330 VFYSAYIPLNEDPVLPEIGTPPPLLREHRLYQADWLLRFYGFQADELLTIEKPNFNELLD 389

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           +   +   + ++PG+  K ASRI+
Sbjct: 390 -----PKCDWALRHLELFPVE-----VETASYAELLRVPGVGPKSASRIV 429


>gi|255030452|ref|ZP_05302403.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes LO28]
          Length = 36

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC 37
          M   IKG +  +  +Y++++   + Y I       S 
Sbjct: 1  MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSF 36


>gi|205374297|ref|ZP_03227096.1| hypothetical protein Bcoam_14304 [Bacillus coahuilensis m4-4]
          Length = 55

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 2  IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF 44
             IKG +E +  +YV+++   + Y +Y P    S        
Sbjct: 14 YEYIKGTVEFIGPEYVVVEAGDIGYQLYTP-NPFSFSPHEKSH 55


>gi|291533988|emb|CBL07101.1| RuvA, C-terminal domain [Megamonas hypermegale ART12/1]
          Length = 51

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                A  AL++LGY + +    + SVLKK  N+ +   II+ AL+ +S
Sbjct: 5   DMYEEATQALLSLGYTKPE----INSVLKKAGNMTNTEDIIKFALKELS 49


>gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8]
 gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8]
          Length = 575

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 73  MLLQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           + +  V GVG + A  +   +   +  +L  ++   +   + ++ G   K A RI     
Sbjct: 93  LEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD---LTRLKGFGPKRAERI----- 144

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167
                   +     +   +    + S+    + AI AL
Sbjct: 145 -----REGLALAQAAGKRRPLGAVLSLARSLLEAIRAL 177


>gi|238921830|ref|YP_002935344.1| hypothetical protein EUBELI_20063 [Eubacterium eligens ATCC 27750]
 gi|238873502|gb|ACR73210.1| Hypothetical protein EUBELI_20063 [Eubacterium eligens ATCC 27750]
          Length = 485

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLDRQWFMLLQSVQG- 80
           V Y  Y P+   S L ++     L  E  + Q    L  +GF +D        L S    
Sbjct: 314 VFYSAYIPLNEDSALPELDAEIPLLREHRLYQADWLLRYYGFQADE-------LLSENRP 366

Query: 81  -----VGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                +  +   A+  L +         I   +  ++ +IPG+  K A RI+
Sbjct: 367 NFNEYLDPKCDWAVRHLGQFPVE-----IQTASYDMLLRIPGVGPKSAKRIV 413


>gi|24987362|pdb|1IXS|A Chain A, Structure Of Ruvb Complexed With Ruva Domain Iii
          Length = 62

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A        A  A+ AL  LG+ + QA   V+ +L +    A    +I+ AL+ +
Sbjct: 8   AGEKVESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPK-ARAQDLIKEALKRL 61


>gi|289808763|ref|ZP_06539392.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 36

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIR 199
             A++ALV LGY   +A+  V  + + +   A    +IR
Sbjct: 1   QEAVAALVALGYKPQEASRMVSKIARPD---ASSETLIR 36


>gi|254458423|ref|ZP_05071848.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
 gi|207084731|gb|EDZ62018.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
          Length = 475

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +   F  L SV GVGA+    ++      + V  ++ QN+ ++ ++ GI+ K+AS+I
Sbjct: 409 TKEELSDF--LTSVDGVGAKKVEKIVKHFGNVDEVVGVLHQNTSILTEVKGITKKLASKI 466


>gi|291550966|emb|CBL27228.1| hypothetical protein RTO_27780 [Ruminococcus torques L2-14]
          Length = 509

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  Y P+   + L +IG    L  E  + Q    L  +GF +      ++  F  +  
Sbjct: 333 VFYSAYIPLNEDNVLPEIGTPPPLLREHRLYQADWLLRFYGFQAGELLSSEQPNFNEMLD 392

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
                 +   A+  L +         +   +   + ++PGI  K ASRI
Sbjct: 393 -----PKCDWALRHLEQFPVE-----VEKASYATLLRVPGIGPKSASRI 431


>gi|291533536|emb|CBL06649.1| Putative ATPase (DUF699) [Megamonas hypermegale ART12/1]
          Length = 438

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+   ++ G+G  +A  +++      L   II ++   + ++PGI  K A +I
Sbjct: 84  FLASGAINGIGPAMAKKIVAEFGEKTLE--IIAKSPNKLLKVPGIGKKTAEKI 134


>gi|153811925|ref|ZP_01964593.1| hypothetical protein RUMOBE_02318 [Ruminococcus obeum ATCC 29174]
 gi|149832059|gb|EDM87144.1| hypothetical protein RUMOBE_02318 [Ruminococcus obeum ATCC 29174]
          Length = 513

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 18/109 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  Y P+   S L +IG    L  E  + Q    L  +GF +D      +  F  L  
Sbjct: 337 VFYSAYIPLNDDSILPQIGTPPPLLREHRLYQADWLLRFYGFQADELLSESQPNFNELLD 396

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
                 +   A+  L           +   +   + ++PGI  K ASRI
Sbjct: 397 -----PKCDWALHHLEHFPVE-----VEKASYATLLRVPGIGPKSASRI 435


>gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A]
 gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A]
          Length = 821

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTE 127
           L+ S+  +G + A  +L    +   V++++  +++ + ++  I  K A+RI  + E
Sbjct: 764 LISSISNIGPKAARNLLLHFGS---VKAVLQADTEELKKVKLIGPKTAARIKEVLE 816


>gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
 gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
          Length = 575

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 16/98 (16%)

Query: 73  MLLQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           + +  V GVG + A  +   +   +  +L  ++   +   + ++ G   K A RI     
Sbjct: 93  LEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD---LTRLKGFGPKRAERI----- 144

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167
                   +     +   +    + S+    + AI  L
Sbjct: 145 -----REGLALAQAAGKRRPLGAVLSLARSLLEAIRGL 177


>gi|238926841|ref|ZP_04658601.1| exodeoxyribonuclease V alpha subunit [Selenomonas flueggei ATCC
           43531]
 gi|238885373|gb|EEQ49011.1| exodeoxyribonuclease V alpha subunit [Selenomonas flueggei ATCC
           43531]
          Length = 723

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 73  MLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT---- 126
             L S  ++G+G   A  ++ R     L   +I    + + ++ GI  K A +I      
Sbjct: 95  RFLSSGVIEGIGPATARRIVERFGTDTLK--VIESTPRRLTEVTGIGPKTAEKITASYHR 152

Query: 127 --ELKG 130
             EL+ 
Sbjct: 153 QNELRD 158


>gi|220929146|ref|YP_002506055.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219999474|gb|ACL76075.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 461

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 19/111 (17%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQ--- 79
           V Y  + P  T   L  +     L     +     +R +GF    +     LL       
Sbjct: 249 VYYSAFIPTVTDPRLPALIKPPLLREHRLYQADWLLRFYGF-DADE-----LLSKANPSF 302

Query: 80  --GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
              +  +   A+  L           +     +++ ++PGI +K A RI+T
Sbjct: 303 NPELDPKADWALRNLHLFPVE-----VNTAEYEMLLRVPGIGVKSAQRIIT 348


>gi|293395809|ref|ZP_06640091.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
 gi|291421746|gb|EFE94993.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
          Length = 77

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 128 LKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
           +K +   L+  +  + S ++    A           A SALV LGY   +A+  V  + K
Sbjct: 1   MKDRFKGLNGDLFNNSSEISLPASATQTPEADAEAEAASALVALGYKPQEASRMVSKIAK 60

Query: 187 KEKNIADDSQIIRLALRA 204
                AD   +IR ALRA
Sbjct: 61  ---PGADCETLIRDALRA 75


>gi|163815611|ref|ZP_02206984.1| hypothetical protein COPEUT_01786 [Coprococcus eutactus ATCC 27759]
 gi|158449248|gb|EDP26243.1| hypothetical protein COPEUT_01786 [Coprococcus eutactus ATCC 27759]
          Length = 516

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 20/111 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFL-----SDLDRQWFMLLQ 76
           V Y  Y PI   S L  +G    L  E  + Q    L  +GF      +  +        
Sbjct: 335 VFYSAYIPINDDSALPSLGTEVPLLREHRLYQADWLLRYYGFRADEIVTADEPNL----- 389

Query: 77  SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             Q +  +   A+  L +         +      ++ +IPGI  K A+RI+
Sbjct: 390 -DQRMDPKCNWAVRHLDQFPVE-----VQTAPYDLLLRIPGIGPKSAARIV 434


>gi|304436463|ref|ZP_07396437.1| RecD/TraA family helicase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370509|gb|EFM24160.1| RecD/TraA family helicase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 723

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 73  MLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT---- 126
             L S  ++G+G  +A  ++ R     L   +I    + + ++ GI  K A +I      
Sbjct: 95  RFLSSGVIEGIGPAMARRIVERFGTDTLK--VIESTPRRLTEVTGIGPKTAEKITASYLR 152

Query: 127 --ELKG 130
             EL+ 
Sbjct: 153 QSELRD 158


>gi|313125020|ref|YP_004035284.1| excinuclease ABC subunit c [Halogeometricum borinquense DSM 11551]
 gi|312291385|gb|ADQ65845.1| Excinuclease ABC subunit C [Halogeometricum borinquense DSM 11551]
          Length = 581

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 16/93 (17%)

Query: 47  LFVETHMRQDQIRLFGFL-----SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101
           L V   +R +  R   F      +  D     +L  V GVG +    +L R  + E V +
Sbjct: 498 LHVLQRVRDEAHR---FAVQYHQTLRD-DVRTVLDDVPGVGEKTRRALLRRFGSVENVRA 553

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
               +   +  +PG+  K A    TELK +   
Sbjct: 554 ATTAD---LTDVPGVGEKTA----TELKQRLSG 579


>gi|227498343|ref|ZP_03928493.1| helicase [Acidaminococcus sp. D21]
 gi|226903805|gb|EEH89723.1| helicase [Acidaminococcus sp. D21]
          Length = 722

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           ++GVG  +A  ++           II ++ + + ++PGI  K A  I+
Sbjct: 92  IKGVGPAMAQRIVDCFGEDTFR--IIDEHPERLREVPGIGKKKAEDII 137


>gi|255282586|ref|ZP_05347141.1| radical SAM domain protein [Bryantella formatexigens DSM 14469]
 gi|255266879|gb|EET60084.1| radical SAM domain protein [Bryantella formatexigens DSM 14469]
          Length = 535

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82
           Y P+   S L   G    L  E  + Q    L  +GF +D     +R  F          
Sbjct: 361 YVPLNEDSALPAPGTPAPLLREHRLYQADWLLRFYGFQADELLTIERPNFNEQLD----- 415

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L           I      +I ++PG+  K A RI+
Sbjct: 416 PKCDWALRHLELFPVE-----INRAPYDMILRVPGVGPKSAMRIV 455


>gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23]
 gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23]
          Length = 575

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + +  V GVG + A G+   L   +  +L E++   +   + ++ G   K A RI
Sbjct: 93  LEVMEVPGVGPKTARGLYEALGIDSLEKLKEALERGD---LLRLKGFGAKKAERI 144


>gi|292657114|ref|YP_003537011.1| excinuclease ABC subunit C [Haloferax volcanii DS2]
 gi|291372136|gb|ADE04363.1| excinuclease ABC subunit C [Haloferax volcanii DS2]
          Length = 579

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 19/111 (17%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV----QGVG 82
           ++  P RT        D   L V   +R +  R   F     +     +++V     GVG
Sbjct: 483 LVVTPDRTFDW---PDDAPHLHVLQRVRDEAHR---FAVQYHQTLRDEVKTVLDDVPGVG 536

Query: 83  ARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            +    +L+R  +   + E+  +++   +  +PG+  K A     ELK + 
Sbjct: 537 EKTRRALLTRFGSVEGVREA-SVED---LTDVPGVGEKTAD----ELKRRL 579


>gi|160894385|ref|ZP_02075162.1| hypothetical protein CLOL250_01938 [Clostridium sp. L2-50]
 gi|156864086|gb|EDO57517.1| hypothetical protein CLOL250_01938 [Clostridium sp. L2-50]
          Length = 522

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  Y P+   S L  +     L  E  + Q    L  +GF +D     +R  F +   
Sbjct: 341 VFYSAYIPVNEDSALPSLATPVPLLREHRLYQADWLLRFYGFQADELLSEERPNFNV--- 397

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
              +  +   A+  L +         +   +   + ++PGI  K A RI+
Sbjct: 398 --RMDPKCDWAIRHLEQFPIE-----VQTASYDTLLRVPGIGPKSAGRIV 440


>gi|163782603|ref|ZP_02177600.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882176|gb|EDP75683.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 581

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR--QWFMLLQSVQGVGARV---AMGV 89
           L+ L  IG    L +E  +R   ++ +       R  +  + L  V G+G +    A   
Sbjct: 55  LTKLPGIGSSTLLKIEEFLRTGTVKKY--EDLRKRVPEDLLELMDVPGIGPKTLKVAYEK 112

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TEL 128
           L   +  + + ++       +A++PG   K   +I+   EL
Sbjct: 113 LGVRSKEDFIRALKDG---SLAKLPGFGPKKVEKILKGIEL 150


>gi|269126428|ref|YP_003299798.1| excinuclease ABC subunit C [Thermomonospora curvata DSM 43183]
 gi|268311386|gb|ACY97760.1| excinuclease ABC, C subunit [Thermomonospora curvata DSM 43183]
          Length = 684

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            L  V G+G      +L    +   L E+ + Q    IA++PGI  + A +I   L G A
Sbjct: 592 ELDGVPGLGPARRTALLKHFGSLKRLREATVAQ----IAEVPGIGPRTAEQIAAALHGGA 647

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
                   +  +                 +
Sbjct: 648 PPNGRAAGKAAASRGAPPGDAPGRVPTEED 677


>gi|255027600|ref|ZP_05299586.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-003]
          Length = 60

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           V  E   +  +      A+ AL  LGY   +    +  + K+    +D    I+LAL+ +
Sbjct: 1   VAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPKLAKEADLTSD--AYIKLALQLM 58


>gi|317496898|ref|ZP_07955228.1| helix-hairpin-helix domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895910|gb|EFV18062.1| helix-hairpin-helix domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 497

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  Y P+   S L  +G    L  E  + Q    L  +GF +D     DR  F  +  
Sbjct: 305 VFYSAYVPLNEDSNLPALGTAPPLLREHRLYQADWLLRFYGFKADELLSVDRPNFNTMLD 364

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           I   +  V+ ++PGI  K A RI+
Sbjct: 365 -----PKCDWALRHLDIYPVE-----INRASYDVLLRVPGIGTKSAFRIV 404


>gi|167765785|ref|ZP_02437838.1| hypothetical protein CLOSS21_00276 [Clostridium sp. SS2/1]
 gi|167712502|gb|EDS23081.1| hypothetical protein CLOSS21_00276 [Clostridium sp. SS2/1]
 gi|291559148|emb|CBL37948.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif
           [butyrate-producing bacterium SSC/2]
          Length = 497

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  Y P+   S L  +G    L  E  + Q    L  +GF +D     DR  F  +  
Sbjct: 305 VFYSAYVPLNEDSNLPALGTAPPLLREHRLYQADWLLRFYGFKADELLSVDRPNFNTMLD 364

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           I   +  V+ ++PGI  K A RI+
Sbjct: 365 -----PKCDWALRHLDIYPVE-----INRASYDVLLRVPGIGTKSAFRIV 404


>gi|198284782|ref|YP_002221103.1| PHP domain-containing protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666221|ref|YP_002427466.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198249303|gb|ACH84896.1| PHP domain protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518434|gb|ACK79020.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 576

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQSVQGVGARVAMGV-- 89
           L+ L  IG+     +   +         FL  L++Q       L  V G+G +    +  
Sbjct: 56  LTELPGIGEDLAKKIIEIVTTGHCS---FLEKLEKQTPPALTELLKVPGLGPKRVKALWH 112

Query: 90  -LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
            L   T  +L  +        I  IPG   K  +RI+  L+ +  ++ 
Sbjct: 113 ELDVETVDQLTRAAREG---RIRSIPGFGEKTEARILEALQAQIAAVP 157


>gi|118777731|ref|XP_308240.3| laminin gamma 1 (AGAP007629-PA) [Anopheles gambiae str. PEST]
 gi|158285318|ref|XP_001687877.1| laminin gamma 1 (AGAP007629-PB) [Anopheles gambiae str. PEST]
 gi|116132043|gb|EAA04042.3| laminin gamma 1 (AGAP007629-PA) [Anopheles gambiae str. PEST]
 gi|157019934|gb|EDO64526.1| laminin gamma 1 (AGAP007629-PB) [Anopheles gambiae str. PEST]
          Length = 1624

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 121  ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            A RI  +L  K    + +++   + +   +  +        +A+ AL  L Y ++QA  A
Sbjct: 1308 ADRIAEDLANKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 1367

Query: 181  VVS 183
            V  
Sbjct: 1368 VAE 1370


>gi|6706335|emb|CAB66001.1| laminin gamma 1 precursor [Anopheles gambiae]
          Length = 1623

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 121  ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            A RI  +L  K    + +++   + +   +  +        +A+ AL  L Y ++QA  A
Sbjct: 1307 ADRIAEDLANKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 1366

Query: 181  VVS 183
            V  
Sbjct: 1367 VAE 1369


>gi|1526547|dbj|BAA13425.1| DNA polymerase family X [Thermus aquaticus]
          Length = 320

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + +  V GVG + A G+   L   +  +L E++   +   + ++ G   K A RI
Sbjct: 93  LEVMEVPGVGPKTARGLYEALGIDSLEKLKEALERGD---LLRLKGFGAKKAERI 144


>gi|313115220|ref|ZP_07800703.1| excinuclease ABC subunit C [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622449|gb|EFQ05921.1| excinuclease ABC subunit C [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 631

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
              ++D  G    I     T + +  I D    F   + +Q             + +   
Sbjct: 528 TRAIVDSNGREIAINMNRGTFTFITAIQDETHRFANAYRKQ---------QMKQKSYSST 578

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  + G+G + A  ++++  +   V ++       +   PG+  + A  I
Sbjct: 579 LTEIPGIGPKTAKALMAQFKS---VGAVKEATPDQLENTPGVGKQTAQII 625


>gi|320528995|ref|ZP_08030087.1| helicase, RecD/TraA family [Selenomonas artemidis F0399]
 gi|320138625|gb|EFW30515.1| helicase, RecD/TraA family [Selenomonas artemidis F0399]
          Length = 724

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------TELKG 130
           + GVG  +A  ++ R  A     +II      + ++PGI  K   +I+      +EL+ 
Sbjct: 101 IDGVGPAMARRIVDRFGAKSF--AIIETAPHRLKEVPGIGAKTLEKIVSSYMRQSELRD 157


>gi|298676088|ref|YP_003727838.1| DNA mismatch repair protein MutS domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298289076|gb|ADI75042.1| DNA mismatch repair protein MutS domain protein [Methanohalobium
           evestigatum Z-7303]
          Length = 696

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELV-ESIILQNSKVIAQIPGISMKIASRIMTELKG 130
              LQ V  +G + A   +    + E    +I+  +   I++I GI  K A  ++ E +G
Sbjct: 1   MESLQDVPRIGDKTAQRFIGHFGSEEAALNAILNGDIASISEIEGIGQKFAISLVHETRG 60


>gi|219851698|ref|YP_002466130.1| Hef nuclease [Methanosphaerula palustris E1-9c]
 gi|219545957|gb|ACL16407.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 754

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           F S  ++Q + ++ +   +G + A  +L    +   V ++I  N +V++ I GI  K A 
Sbjct: 687 FKSVKEQQEY-VVAAFPDIGLKNARLLLDYCGS---VRAVINANEEVLSSIRGIGEKTAQ 742

Query: 123 RIMTELKGK 131
           RI+ EL  +
Sbjct: 743 RIV-ELANR 750


>gi|292670819|ref|ZP_06604245.1| RecD/TraA family helicase [Selenomonas noxia ATCC 43541]
 gi|292647440|gb|EFF65412.1| RecD/TraA family helicase [Selenomonas noxia ATCC 43541]
          Length = 722

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM-- 125
           +R  F+   ++ GVG  +A  ++       L   II      + +I GI  K A +I   
Sbjct: 93  ER--FLASGAIDGVGPAMARRIVEHFGTEALR--IIESVPHRLREISGIGPKTAEKIASS 148

Query: 126 ----TELKG 130
               +EL+ 
Sbjct: 149 YMRQSELRD 157


>gi|107102107|ref|ZP_01366025.1| hypothetical protein PaerPA_01003156 [Pseudomonas aeruginosa PACS2]
 gi|116050572|ref|YP_790609.1| excinuclease ABC subunit C [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891335|ref|YP_002440202.1| excinuclease ABC subunit C [Pseudomonas aeruginosa LESB58]
 gi|254235571|ref|ZP_04928894.1| excinuclease ABC subunit C [Pseudomonas aeruginosa C3719]
 gi|254241018|ref|ZP_04934340.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 2192]
 gi|122259695|sp|Q02N77|UVRC_PSEAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226732392|sp|B7V4X6|UVRC_PSEA8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115585793|gb|ABJ11808.1| excinuclease ABC subunit C [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167502|gb|EAZ53013.1| excinuclease ABC subunit C [Pseudomonas aeruginosa C3719]
 gi|126194396|gb|EAZ58459.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 2192]
 gi|218771561|emb|CAW27329.1| excinuclease ABC subunit C [Pseudomonas aeruginosa LESB58]
          Length = 608

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG +    +L       EL  + I +    +A+ PGIS K+A +I
Sbjct: 554 TLEDVPGVGPKRRRDLLKHFGGLQELSRASIDE----LAKAPGISKKLAEQI 601


>gi|312143150|ref|YP_003994596.1| radical SAM domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311903801|gb|ADQ14242.1| radical SAM domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 415

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLDRQWFMLLQSVQGV 81
           V Y  Y P+   S L  +     L  E  + Q    L  +GF +D           ++ +
Sbjct: 251 VYYSAYLPVSNSSLLPALNSSPPLKREHRLYQADWLLRFYGFKADELLNLARENLDLK-L 309

Query: 82  GARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +   A+  L +         +   + +++ ++PGI  + A++I+
Sbjct: 310 DPKADWALNNLDKFPVE-----VNTADYQMLLRVPGIGPRSAAKIV 350


>gi|15597781|ref|NP_251275.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PAO1]
 gi|21264128|sp|Q9I0Q1|UVRC_PSEAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|9948648|gb|AAG05973.1|AE004687_2 excinuclease ABC subunit C [Pseudomonas aeruginosa PAO1]
          Length = 608

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG +    +L       EL  + I +    +A+ PGIS K+A +I
Sbjct: 554 TLEDVPGVGPKRRRDLLKHFGGLQELSRASIDE----LAKAPGISKKLAEQI 601


>gi|152985488|ref|YP_001347977.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PA7]
 gi|189038074|sp|A6V4J2|UVRC_PSEA7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|150960646|gb|ABR82671.1| excinuclease ABC, C subunit [Pseudomonas aeruginosa PA7]
          Length = 608

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG +    +L       EL  + I +    +A+ PGIS K+A +I
Sbjct: 554 TLEDVPGVGPKRRRDLLKHFGGLQELSRASIDE----LAKAPGISKKLAEQI 601


>gi|21220438|ref|NP_626217.1| excinuclease ABC subunit C [Streptomyces coelicolor A3(2)]
 gi|8134800|sp|Q9Z512|UVRC_STRCO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|4468689|emb|CAB38143.1| ABC excision nuclease subunit C [Streptomyces coelicolor A3(2)]
          Length = 728

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L ++ D    F  T+ R              R  F    L  V G+G      ++  
Sbjct: 598 LYLLQRVRDEAHRFAITYQR---------AKRAKR--FRAGPLDDVPGLGETRKQALIKH 646

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
             +  +L  + I Q    I ++PGI  K A  +   L     +  +V       ++ +  
Sbjct: 647 FGSVKKLRSATIDQ----ICEVPGIGRKTAETVAVALARATPAAPAVNTATGEIMDDDDG 702

Query: 152 HICSMPSFAINAISA 166
              +        +SA
Sbjct: 703 APETTADAPGEPVSA 717


>gi|303240875|ref|ZP_07327387.1| radical SAM family protein [Acetivibrio cellulolyticus CD2]
 gi|302591603|gb|EFL61339.1| radical SAM family protein [Acetivibrio cellulolyticus CD2]
          Length = 433

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 19/123 (15%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL---DR--QWFMLLQS 77
           V Y  Y P+ T   L  I     L     +     +R +GF S     ++   +   L  
Sbjct: 250 VYYSAYVPVSTNPKLPLISKPPLLREHRLYQADWLLRFYGFNSSELLDEKYPDFDTELD- 308

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
                 +   A+  +           I   + +++ +IPG+ ++ A +I+   + K +  
Sbjct: 309 -----PKSSWALRNIHLFPVD-----INKADYEMLLRIPGVGVRSAQKIIAARRVKLLDF 358

Query: 136 SSV 138
             +
Sbjct: 359 DDL 361


>gi|256788436|ref|ZP_05526867.1| excinuclease ABC subunit C [Streptomyces lividans TK24]
 gi|289772326|ref|ZP_06531704.1| excinuclease ABC, C subunit [Streptomyces lividans TK24]
 gi|289702525|gb|EFD69954.1| excinuclease ABC, C subunit [Streptomyces lividans TK24]
          Length = 728

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L ++ D    F  T+ R              R  F    L  V G+G      ++  
Sbjct: 598 LYLLQRVRDEAHRFAITYQR---------AKRAKR--FRAGPLDDVPGLGETRKQALIKH 646

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
             +  +L  + I Q    I ++PGI  K A  +   L     +  +V       ++ +  
Sbjct: 647 FGSVKKLRSATIDQ----ICEVPGIGRKTAETVAVALARATPAAPAVNTATGEIMDDDDG 702

Query: 152 HICSMPSFAINAISA 166
              +        +SA
Sbjct: 703 APETTADAPGEPVSA 717


>gi|312880085|ref|ZP_07739885.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260]
 gi|310783376|gb|EFQ23774.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260]
          Length = 488

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL-----SDLDRQW-FMLLQSVQG 80
            ++ P R  + L    +   L +   +R +  R   F      S  DR      L+S+ G
Sbjct: 383 ELFLPGR-ANPLRLPREDLALRLLQQVRDEAHR---FAVTSHRSRRDRLLRASRLESIPG 438

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           +G   A  +LSR  +T   ++I     + +A+ PGI   +A RI+T LK
Sbjct: 439 IGKGKAAQLLSRFGST---KAIARMAPEDLARTPGIGTVLAQRILTALK 484


>gi|329940820|ref|ZP_08290100.1| excinuclease ABC subunit C [Streptomyces griseoaurantiacus M045]
 gi|329300114|gb|EGG44012.1| excinuclease ABC subunit C [Streptomyces griseoaurantiacus M045]
          Length = 681

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 17/135 (12%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML-LQSVQGVGARVAMGVLSRI 93
           L  L +I D    F  T+ R          +   ++     L  V G+G      ++   
Sbjct: 550 LYLLQRIRDEAHRFAITYQR----------TKRAKRLRSGPLDDVPGLGETRKQALIKHF 599

Query: 94  -TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA- 151
            +   L  + + Q    I ++PGI  K A  I   L   A +  +V       + +E+  
Sbjct: 600 GSVKRLRAATLDQ----IQEVPGIGRKTAETIAVALARSAPAAPAVNTATGEIIEEEEPV 655

Query: 152 HICSMPSFAINAISA 166
                       +SA
Sbjct: 656 GPAGTADPPQEPVSA 670


>gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus
           SA-01]
 gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01]
          Length = 575

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRI-----MT 126
           +  V GVG + A  +   L   +  +L E++   +   + ++ G   K A RI     + 
Sbjct: 95  VMEVPGVGPKTARQLYDELGIDSLEKLREALDRGD---LLRLKGFGQKKAERIREGLALV 151

Query: 127 ELKGKAISLSSVVQ 140
           ++ GK   L +V+ 
Sbjct: 152 QVAGKRRPLGAVLS 165



 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQN-----SKVIAQIPGISMKIASRIMTE 127
             L ++ G+G  +A  +L  +   E+ +   L          + ++PG+  K A ++  E
Sbjct: 53  EALLALPGIGPDLAEKILEFLKTGEIKKHRELAERVPKGVLAVMEVPGVGPKTARQLYDE 112

Query: 128 L 128
           L
Sbjct: 113 L 113


>gi|288561345|ref|YP_003424831.1| Hef nuclease [Methanobrevibacter ruminantium M1]
 gi|288544055|gb|ADC47939.1| Hef nuclease [Methanobrevibacter ruminantium M1]
          Length = 842

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++Q F+ ++S+  +G   A  +L    +   V++++  + K + ++ GI  K A  I
Sbjct: 769 EQQLFI-IESLPNIGPVHAKNLLEHFGS---VKAVLQADEKQLQEVDGIGKKTAKSI 821


>gi|225573018|ref|ZP_03781773.1| hypothetical protein RUMHYD_01209 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039615|gb|EEG49861.1| hypothetical protein RUMHYD_01209 [Blautia hydrogenotrophica DSM
           10507]
          Length = 492

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82
           Y P+     L ++G    L  E  + Q    L  +GF ++      R  F +L       
Sbjct: 305 YIPLNEDPLLPELGTAPPLLREHRLYQADWLLRYYGFQAEELLSPQRPNFNVLLD----- 359

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L      E+  +   +    + ++PGI +K A RI+
Sbjct: 360 PKCDWALRHLETFPV-EINRATYEE----LLKVPGIGVKSAMRII 399


>gi|297571562|ref|YP_003697336.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931909|gb|ADH92717.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 284

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ+V G+G   A  ++          ++       + +I GI  K   RI
Sbjct: 231 ELQTVPGIGPATAAAIVQWREKNGKFAAVDD-----LTRISGIGEKTIERI 276


>gi|169830983|ref|YP_001716965.1| RecD/TraA family helicase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637827|gb|ACA59333.1| helicase, RecD/TraA family [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 688

 Score = 44.3 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 68  DRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +      L S  ++GVG  +A  ++S +     V +I L++  V+ ++ GI  K
Sbjct: 71  EEAAADFLSSGLIKGVGPVLAERIVSVLGPNA-VSAI-LEDPDVLKKVKGIGKK 122


>gi|296388947|ref|ZP_06878422.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PAb1]
 gi|313107618|ref|ZP_07793803.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 39016]
 gi|310880305|gb|EFQ38899.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 39016]
          Length = 608

 Score = 44.3 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG +    +L       EL  + I +    +A+ PGIS K+A +I
Sbjct: 554 TLEDVPGVGPKRRRDLLKYFGGLQELSRASIDE----LAKAPGISKKLAEQI 601


>gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192]
 gi|306532232|gb|ADN01766.1| DNA ligase [Spirochaeta thermophila DSM 6192]
          Length = 673

 Score = 44.3 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 76  QSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  VG  V   ++         L+E     +   + ++ GI  K A +++  L+ 
Sbjct: 506 LGIPDVGPSVVETLIRGGITGIDRLLEIADRGDVDALTRLEGIGEKTARQLIETLRD 562


>gi|258645584|ref|ZP_05733053.1| helicase, RecD/TraA family [Dialister invisus DSM 15470]
 gi|260402942|gb|EEW96489.1| helicase, RecD/TraA family [Dialister invisus DSM 15470]
          Length = 709

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 37/133 (27%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
             ++++     L    G+G  +A  ++       L   I  +N   ++++ GI  K   R
Sbjct: 79  ADEVEQFLASGLI--SGIGPSMAKRIVQHFGKKTLE--IFERNIDALSEVSGIGQKTLER 134

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA--- 180
           I    K                         S  S     I  L +LG  +  A      
Sbjct: 135 I----KD----------------------SYSGISAMQEVIMFLQSLGISERFALPMQQL 168

Query: 181 ----VVSVLKKEK 189
               V+ V++++ 
Sbjct: 169 YGDDVMKVVREDP 181


>gi|268317536|ref|YP_003291255.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252]
 gi|262335070|gb|ACY48867.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252]
          Length = 385

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 66  DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             + +  + L  V GVG      +L+R  +    ++ +      + Q+PGI ++ A RI
Sbjct: 24  AEELRALVALTLVPGVGPGRIRALLARFGS---AQAALHAPVAALVQVPGIGLQTARRI 79


>gi|332703906|ref|ZP_08423994.1| helicase, RecD/TraA family [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554055|gb|EGJ51099.1| helicase, RecD/TraA family [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 751

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++GVG + A  +++      L   II    + + ++ GI  K   RI
Sbjct: 109 IKGVGPKTAEALVATFGTAVLD--IIESEPERLLEVDGIGKKTLERI 153


>gi|157364326|ref|YP_001471093.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga lettingae TMO]
 gi|157314930|gb|ABV34029.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga lettingae TMO]
          Length = 180

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTE 127
             +  L  + G+G   A  +L    +    +SI       +  + GI    A ++    +
Sbjct: 55  ATYEELLEIPGIGPAKARSILDYRESNGPFQSIED-----LTNVSGIGRATAEKMASFVD 109

Query: 128 LK 129
           LK
Sbjct: 110 LK 111


>gi|229820663|ref|YP_002882189.1| excinuclease ABC, C subunit [Beutenbergia cavernae DSM 12333]
 gi|259710335|sp|C5BV40|UVRC_BEUC1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229566576|gb|ACQ80427.1| excinuclease ABC, C subunit [Beutenbergia cavernae DSM 12333]
          Length = 693

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
            L  V G+G      +L    +   + +   +       +PG   + A +++  L   A 
Sbjct: 604 TLDDVPGLGPSRQAALLQAFGSVRRIRAATPEEIAA---VPGFGRRTAEQVLAAL---AP 657

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
           S      +  +      A   +      +A+
Sbjct: 658 SPDDATTEPGAVGEPGTADGAAADPDGRDAV 688


>gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
 gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 736

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           + S+  +G  +A  +L      + +E+I   + + + ++P +  K A +I+
Sbjct: 674 VSSISDIGPVIARNLLEHF---QTIENIAKASVEDLMKVPKVGKKTAEKIV 721


>gi|224023312|ref|ZP_03641678.1| hypothetical protein BACCOPRO_00005 [Bacteroides coprophilus DSM
           18228]
 gi|224016534|gb|EEF74546.1| hypothetical protein BACCOPRO_00005 [Bacteroides coprophilus DSM
           18228]
          Length = 753

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 35/159 (22%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI------------- 124
           V+G+G + A  ++ +    E ++ I   + + + ++PGI  K   +I             
Sbjct: 90  VKGIGPKFAQLIVRQFGL-ETIDVIET-DIERLYEVPGIGKKRVEKIRESWEKQKDIKNV 147

Query: 125 MTELKG---------KAISLSSVVQQDMSCVNK--EQAHICSMPSFAINAISALVNLGYG 173
           M  L+G         K          D    N       I  +     + I+A   +GY 
Sbjct: 148 MLFLQGYGVSTAYAAKIYRQYGKESIDKVKENPYRLADDIWGIGFKTADGIAA--KMGYE 205

Query: 174 QDQATT-------AVVSVLKKEKNIADDSQIIRLALRAI 205
           ++            +  +  +    A++ Q+++ AL  +
Sbjct: 206 KNDLRRCKSGIIYTLNQLANEGHVYAEEEQLVKAALELL 244


>gi|169333819|ref|ZP_02861012.1| hypothetical protein ANASTE_00205 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259384|gb|EDS73350.1| hypothetical protein ANASTE_00205 [Anaerofustis stercorihominis DSM
           17244]
          Length = 737

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           V G+G + A  ++       L   I+ ++   ++++ GI  K A  +  E K 
Sbjct: 89  VGGIGPKKAKEIVDHFGDKTLE--ILEKDPMRLSEVKGIGKKTALLVGLEYKN 139


>gi|206901843|ref|YP_002251194.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12]
 gi|226698348|sp|B5YF86|UVRC_DICT6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|206740946|gb|ACI20004.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12]
          Length = 599

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 15/107 (14%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQG 80
            I+ P R+   L        L +   +R +  R   F     R+          L  + G
Sbjct: 495 EIFVPGRSEPILLSYDSPA-LHLLQQVRDEAHR---FAVSYHRKLRSKKLMDSHLDKIPG 550

Query: 81  VGARVAMGVLSRITA-TELVESIILQNSKVIAQIPGISMKIASRIMT 126
           VG +    +L   +    L ++  L++   + ++PGIS KIA +I  
Sbjct: 551 VGEKRMKILLEAFSTLENLKKA-SLED---LKKVPGISEKIAEKIYL 593


>gi|326202131|ref|ZP_08192001.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325987926|gb|EGD48752.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 461

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQG-- 80
           V Y  + P  T   L  +     L     +     +R +GF +D        L S     
Sbjct: 249 VYYSAFVPTVTDPRLPALIKPPLLREHRLYQADWLLRFYGFEADE-------LLSKSNPN 301

Query: 81  ----VGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
               +  +   AM  L           +     +++ ++PGI +K A RI+T
Sbjct: 302 FNPELDPKADWAMRNLHMFPIE-----VNSAEYELLLRVPGIGVKSAQRIIT 348


>gi|302873877|ref|YP_003842510.1| Elongator protein 3/MiaB/NifB [Clostridium cellulovorans 743B]
 gi|307689876|ref|ZP_07632322.1| Elongator protein 3/MiaB/NifB [Clostridium cellulovorans 743B]
 gi|302576734|gb|ADL50746.1| Elongator protein 3/MiaB/NifB [Clostridium cellulovorans 743B]
          Length = 468

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 17/109 (15%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIRLFGFLSDL---DRQW-FMLLQSV 78
           V Y  Y P+ T   L ++    TL      + D  +R++GF ++    ++   F    + 
Sbjct: 250 VYYSAYIPVNTGKNLPELKAPPTLREHRLYQGDWLLRVYGFKAEELLNEKNPNFD--INF 307

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                +   A+  +           I     K + +IPGI ++ A +I+
Sbjct: 308 D---PKTTYALNNMDLFPVE-----INKAPYKTLIRIPGIGIRGAQKIV 348


>gi|260434379|ref|ZP_05788349.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109]
 gi|260412253|gb|EEX05549.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109]
          Length = 661

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           +R     L  + GVG +    +L+   +   +++I L + + +++ PG+   +A     +
Sbjct: 580 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQLASVETLSKAPGVGPALAR----D 632

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSM 156
           +             D     +EQ    S 
Sbjct: 633 IHDFFHPSDDGTDADARAALEEQPQELSA 661


>gi|170742375|ref|YP_001771030.1| RecD/TraA family helicase [Methylobacterium sp. 4-46]
 gi|168196649|gb|ACA18596.1| helicase, RecD/TraA family [Methylobacterium sp. 4-46]
          Length = 736

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G+G ++A  +++   +     ++I  N + + ++PGI    A+R++
Sbjct: 111 GIGPQMAKRIVAAFGSETF--AVIEANPERLTEVPGIGPTRAARLV 154


>gi|331084119|ref|ZP_08333226.1| hypothetical protein HMPREF0992_02150 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402481|gb|EGG82051.1| hypothetical protein HMPREF0992_02150 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 492

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 18/105 (17%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82
           Y P+   S L        L  E  + Q    L  +GF ++     ++  F LL       
Sbjct: 305 YIPLNEDSLLPSPDTPPPLLREHRLYQADWLLRYYGFHAEELLSPEKPNFNLLLD----- 359

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L +         +   +   + ++PGI  K A RI+
Sbjct: 360 PKCEWALRHLDQFPIE-----VSTASYSQLLKVPGIGNKSALRIV 399


>gi|260588713|ref|ZP_05854626.1| radical SAM domain protein [Blautia hansenii DSM 20583]
 gi|260540895|gb|EEX21464.1| radical SAM domain protein [Blautia hansenii DSM 20583]
          Length = 546

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 18/105 (17%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82
           Y P+   S L        L  E  + Q    L  +GF ++     ++  F LL       
Sbjct: 359 YIPLNEDSLLPSPDTPPPLLREHRLYQADWLLRYYGFHAEELLSPEKPNFNLLLD----- 413

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L +         +   +   + ++PGI  K A RI+
Sbjct: 414 PKCEWALRHLDQFPIE-----VSTASYSQLLKVPGIGNKSALRIV 453


>gi|307718783|ref|YP_003874315.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192]
 gi|306532508|gb|ADN02042.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192]
          Length = 800

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           ++G +  + +DYV +D   V Y      PI     L K+GD   + +      D   L
Sbjct: 265 VEGTVIEINKDYVYLD---VGYKSEGQVPISDFDTLPKVGDTVPVVILRKETADGHIL 319


>gi|78212893|ref|YP_381672.1| excinuclease ABC subunit C [Synechococcus sp. CC9605]
 gi|119367855|sp|Q3AJW5|UVRC_SYNSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78197352|gb|ABB35117.1| excinuclease ABC, C subunit [Synechococcus sp. CC9605]
          Length = 661

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           +R     L  + GVG +    +L+   +   +++I L + + +++ PG+   +A     +
Sbjct: 580 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQLASIETLSKAPGVGPALAR----D 632

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSM 156
           +             D     +EQ    S 
Sbjct: 633 IHDFFHPSDEGTDADARAALEEQPQELSA 661


>gi|257052107|ref|YP_003129940.1| DNA mismatch repair protein MutS domain protein [Halorhabdus
           utahensis DSM 12940]
 gi|256690870|gb|ACV11207.1| DNA mismatch repair protein MutS domain protein [Halorhabdus
           utahensis DSM 12940]
          Length = 664

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L ++ GVG + A  +           +I   +   +A+ PGIS   A+RI+
Sbjct: 3   LTAIPGVGEKTAASLAELDDP---AAAIENGDVAAVARAPGISQGRAARIV 50


>gi|325125883|gb|ADY85213.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 407

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 290


>gi|315185614|gb|EFU19382.1| cytidylate kinase [Spirochaeta thermophila DSM 6578]
          Length = 800

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           ++G +  + +DYV +D   V Y      PI     L K+GD   + +      D   L
Sbjct: 265 VEGTVIEINKDYVYLD---VGYKSEGQVPISDFDTLPKVGDTVPVVILRKETADGHIL 319


>gi|313895725|ref|ZP_07829281.1| helicase, RecD/TraA family [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975851|gb|EFR41310.1| helicase, RecD/TraA family [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 724

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------TELKG 130
           + GVG  +A  ++ R  A     +II      + ++PGI  K   +I+      +EL+ 
Sbjct: 101 IDGVGPAMARRIVDRFGAKSF--AIIETAPHRLKEVPGIGAKTLKKIVSSYMRQSELRD 157


>gi|217967867|ref|YP_002353373.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336966|gb|ACK42759.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724]
          Length = 598

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 15/107 (14%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQG 80
            I+ P  + S L        L +   +R +  R   F     R+          L+ + G
Sbjct: 494 EIFVPGNSDSILLPYDSPA-LHLLQQVRDEAHR---FAVSYHRKLRSKKLIDSHLEKIPG 549

Query: 81  VGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           +G +    +L        L ++  L++   + +IPGIS KIA +I  
Sbjct: 550 IGEKRMKILLEAFNDLESLKKA-SLED---LKKIPGISEKIAEKIYL 592


>gi|38196141|gb|AAR13758.1| laminin [Anopheles gambiae]
          Length = 294

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  +L  K    + +++   + +   +  +        +A+ AL  L Y ++QA  A
Sbjct: 168 ADRIAEDLANKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 227

Query: 181 VVS 183
           V  
Sbjct: 228 VAE 230


>gi|38196137|gb|AAR13756.1| laminin [Anopheles gambiae]
 gi|38196139|gb|AAR13757.1| laminin [Anopheles gambiae]
          Length = 294

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  +L  K    + +++   + +   +  +        +A+ AL  L Y ++QA  A
Sbjct: 168 ADRIAEDLANKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 227

Query: 181 VVS 183
           V  
Sbjct: 228 VAE 230


>gi|313901936|ref|ZP_07835353.1| PHP domain protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467782|gb|EFR63279.1| PHP domain protein [Thermaerobacter subterraneus DSM 13965]
          Length = 677

 Score = 43.1 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 75  LQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           L S+ G+G  +A  +             EL   +     + +  +PG+  + A+R+  EL
Sbjct: 106 LLSLPGIGPAIAAKIRDFYATGSTRLLDELRARVPAG-VQALLAVPGLGPRTAARLFHEL 164

Query: 129 K-GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL------VNLGYGQDQATTAV 181
                 +L   ++              +       A+  L      +NLG    +A    
Sbjct: 165 GIDSPAALRDALEDGRVAALPGMGE--ARTRKLREALDRLDREGRWLNLG----EALAVA 218

Query: 182 VSVLKKEKNIADDSQII 198
            +V ++        + +
Sbjct: 219 SAVAEELGRQPGVVEAL 235


>gi|125972928|ref|YP_001036838.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|256005419|ref|ZP_05430383.1| radical SAM domain-containing protein [Clostridium thermocellum DSM
           2360]
 gi|281417123|ref|ZP_06248143.1| radical SAM domain-containing protein [Clostridium thermocellum
           JW20]
 gi|125713153|gb|ABN51645.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|255990645|gb|EEU00763.1| radical SAM domain-containing protein [Clostridium thermocellum DSM
           2360]
 gi|281408525|gb|EFB38783.1| radical SAM domain-containing protein [Clostridium thermocellum
           JW20]
 gi|316940836|gb|ADU74870.1| radical SAM domain-containing protein [Clostridium thermocellum DSM
           1313]
          Length = 435

 Score = 43.1 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 17/122 (13%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL---DRQW-FMLLQSV 78
           V Y  Y P+     L  +     L     +     +R +GF +D    +R   F      
Sbjct: 250 VYYSAYVPVSKNPLLPDLKTPPLLREHRLYQADWLLRFYGFSADELLDERNPDFDPKLD- 308

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
                +   A+  +S          I   + +++ ++PGI ++ A +I+   K K++S  
Sbjct: 309 ----PKTNWAINNMSLFPVE-----INRADYEMLLRVPGIGVRSAKKIIMARKVKSLSFE 359

Query: 137 SV 138
            +
Sbjct: 360 DL 361


>gi|229829629|ref|ZP_04455698.1| hypothetical protein GCWU000342_01726 [Shuttleworthia satelles DSM
           14600]
 gi|229791618|gb|EEP27732.1| hypothetical protein GCWU000342_01726 [Shuttleworthia satelles DSM
           14600]
          Length = 750

 Score = 43.1 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           ++GVG ++A  ++           ++ ++   +++I GIS K+A
Sbjct: 87  IKGVGPKLAARIVKTFKGDTFR--VMEEDPTRLSKIKGISEKMA 128


>gi|160876640|ref|YP_001555956.1| RuvA domain-containing protein [Shewanella baltica OS195]
 gi|160862162|gb|ABX50696.1| RuvA domain protein [Shewanella baltica OS195]
 gi|315268839|gb|ADT95692.1| RuvA domain protein [Shewanella baltica OS678]
          Length = 307

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201
            E   I        +AI AL++LGY   +A   V   LK+        +II+ A
Sbjct: 251 NESKSIIDFKETQNDAIHALISLGYSSSKAKEVV---LKQSNQRLTAEEIIKKA 301


>gi|163750735|ref|ZP_02157971.1| atp-dependent rna helicase, eif-4a family protein [Shewanella
           benthica KT99]
 gi|161329579|gb|EDQ00571.1| atp-dependent rna helicase, eif-4a family protein [Shewanella
           benthica KT99]
          Length = 212

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           RQ F+ LQS+  VG ++A  +LS       +E+I    +  + ++ GI  + A +I
Sbjct: 155 RQLFI-LQSLPQVGPKLAKRLLSHFDN---IEAIFTAPAAELRKVEGIGQEKAQKI 206


>gi|206889916|ref|YP_002248854.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741854|gb|ACI20911.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 400

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 17/122 (13%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL----DRQWFMLLQSV 78
           V Y  Y P+     L +I     L     +     IR +GF ++     ++ +       
Sbjct: 244 VYYSAYIPVNDDPRLPQISKPPLLKEHRLYQADWLIRYYGFHTEEIVSDEKPYLDEKID- 302

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
                ++  A+  ++          I   + + + ++PGI    A RI+ E K   ++L 
Sbjct: 303 ----PKLDWALKNINLFPIE-----IQKASFETLLRVPGIGPTSAKRILKERKNTMLTLD 353

Query: 137 SV 138
            +
Sbjct: 354 GL 355


>gi|313122968|ref|YP_004033227.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279531|gb|ADQ60250.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 424

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 204 LETKEADIIDFLKGLSGIGKKRANDIAQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 263

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  +S + +        + +++  IPGI    A RI++EL  
Sbjct: 264 AEEECQSALQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 307


>gi|271967322|ref|YP_003341518.1| excinuclease ABC subunit C [Streptosporangium roseum DSM 43021]
 gi|270510497|gb|ACZ88775.1| excinuclease ABC, C subunit [Streptosporangium roseum DSM 43021]
          Length = 649

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 31  PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM-LLQSVQGVGARVAMGV 89
               L  L ++ D    F  T+ R          S   +      L  V G+G      +
Sbjct: 559 SSEALYLLQRVRDEAHRFAITYHR----------SKRSKSVKESALDEVPGLGPARRQAL 608

Query: 90  LSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           +    +   L E+   Q    I +IPGI    A  I++ LKG
Sbjct: 609 IKHFGSVKRLREATAAQ----ICEIPGIGPATAETIVSALKG 646


>gi|17230579|ref|NP_487127.1| hypothetical protein all3087 [Nostoc sp. PCC 7120]
 gi|17132181|dbj|BAB74786.1| all3087 [Nostoc sp. PCC 7120]
          Length = 542

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           S +T T++V  I   +   +  +PG+  K+A +I+ 
Sbjct: 475 SELTPTQVVN-INTADLAELETLPGVGKKLAQKIII 509


>gi|269836449|ref|YP_003318677.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269785712|gb|ACZ37855.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 609

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 14/90 (15%)

Query: 46  TLFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQGVGARVAMGVLSRI-TATEL 98
           +LF+   +R +  R   F          +  F   L  ++GVG      +L    +   +
Sbjct: 525 SLFLVQRVRDEAHR---FAVTFHRKRRTKSTFRSALDGLKGVGPARRKALLKTFGSVARI 581

Query: 99  VESIILQNSKVIAQIPGISMKIASRIMTEL 128
            ++ + +    +A +PGI  ++A +I  EL
Sbjct: 582 RQASVEE----LAAVPGIGPRLAEQIKEEL 607


>gi|160944154|ref|ZP_02091384.1| hypothetical protein FAEPRAM212_01661 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444830|gb|EDP21834.1| hypothetical protein FAEPRAM212_01661 [Faecalibacterium prausnitzii
           M21/2]
          Length = 787

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           F+  +S+  +GAR A  ++    A  L   +I  +   + +IPGIS   A RI  E K
Sbjct: 130 FLASRSLPYIGARTADKIIDMFGAEALE--VIANDPARLTKIPGISPDKADRIQQEFK 185


>gi|315187042|gb|EFU20799.1| DNA ligase, NAD-dependent [Spirochaeta thermophila DSM 6578]
          Length = 697

 Score = 42.7 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 76  QSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
             +  VG  V   ++     +   L       + + + ++ GI  K A ++M  L+ 
Sbjct: 506 LGIPEVGPSVVETLIRGGITSIDRLFTIADRGDVEALTRLEGIGEKTARQLMETLRD 562


>gi|217076174|ref|YP_002333890.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B]
 gi|217036027|gb|ACJ74549.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B]
          Length = 191

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 13/78 (16%)

Query: 75  LQSVQGVGARVAMGVLSRITA-----------TELVES-IILQNSKVIAQIPGISMKIAS 122
           L +V G+G      +   +T             EL +  I   + K + ++PGI    A 
Sbjct: 94  LINVTGIGPSTLEKIRDYVTVSKTNEVQINMNNELKKININKADEKQLEKLPGIGPTKAK 153

Query: 123 RIMTELKGKAISLSSVVQ 140
           RI+ E + K    +S+ +
Sbjct: 154 RII-EYREKNGKFNSLNE 170


>gi|313123289|ref|YP_004033548.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279852|gb|ADQ60571.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 343

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 290


>gi|330984243|gb|EGH82346.1| hypothetical protein PLA107_04349 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 613

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 69  RQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           R+    +  S+ G+GA  A  + S   +   + +++  ++K I  + GI  K A RI
Sbjct: 544 REAAEYVVGSLPGIGAGNATKLFSHFGS---IHAVMTASAKEIMGVKGIGPKTAQRI 597


>gi|55379467|ref|YP_137317.1| mismatch repair protein [Haloarcula marismortui ATCC 43049]
 gi|55232192|gb|AAV47611.1| mismatch repair protein [Haloarcula marismortui ATCC 43049]
          Length = 692

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+SV GVGA+ A  +           ++   +   +A+ PGIS   A+RI
Sbjct: 6   ELESVPGVGAKTAAALRELDDPE---AALRDGDVASLARAPGISEGRAARI 53


>gi|331084623|ref|ZP_08333711.1| hypothetical protein HMPREF0987_00014 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410717|gb|EGG90139.1| hypothetical protein HMPREF0987_00014 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 486

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 24/129 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRL--FGFLSDL---DRQW-FMLLQ 76
           V Y  +  +     L   G+    L  E  + Q    L  +GF ++    ++Q  F +L 
Sbjct: 284 VFYSAFVHVNEDKALPAAGEQGPPLLREHRLYQADWLLRYYGFRAEELLDEQQPNFNVLL 343

Query: 77  SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
                  +   A+  L           +   +   + ++PGI  K A RI+     KA  
Sbjct: 344 D-----PKCNWALKHLEYFPVE-----VNQADYFTLLRVPGIGYKSAERIV-----KARR 388

Query: 135 LSSVVQQDM 143
           + S+  +D+
Sbjct: 389 MGSLSFEDL 397


>gi|255994367|ref|ZP_05427502.1| competence protein CelA [Eubacterium saphenum ATCC 49989]
 gi|255993080|gb|EEU03169.1| competence protein CelA [Eubacterium saphenum ATCC 49989]
          Length = 211

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKV---IAQIPGISMKIASRIMTE 127
            LQ+V G+G   A  ++               N K    + ++PGI  K   +++ E
Sbjct: 160 KLQTVNGIGPATAEKIIDYREN--------NGNFKKVEDLVKVPGIGPKTVQKLIKE 208


>gi|89073042|ref|ZP_01159589.1| excinuclease ABC subunit C [Photobacterium sp. SKA34]
 gi|89051260|gb|EAR56716.1| excinuclease ABC subunit C [Photobacterium sp. SKA34]
          Length = 589

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L+ V+G+G +    +L  +    EL ++    N + IA++PGIS  +A +I+
Sbjct: 536 LEDVEGIGPKRRQALLKYMGGMQELKKA----NKEEIAKVPGISPALAEKIV 583


>gi|227538460|ref|ZP_03968509.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241646|gb|EEI91661.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 370

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  V+G+G R++  +LS   A   VE+I   + K +  IPGI+M I  R+
Sbjct: 9   LTKVKGIGPRLSRSLLSHCDA---VEAIFTASKKQLLTIPGINMAIIERL 55


>gi|313114613|ref|ZP_07800121.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623077|gb|EFQ06524.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 468

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 29/137 (21%)

Query: 61  FG-FLSDLDRQWFMLLQSVQGVGARVAMGV-----LSRITATELVES-IILQNSKVIAQI 113
           +G F  D++R  F +L  V G+G + A  +     LS +   EL    ++L+ ++     
Sbjct: 337 YGLFPVDVNRAPFEMLLRVPGIGPKSARRIWHARKLSSLGLDELKRMGVVLKRAQYFITC 396

Query: 114 PGI-----SMKIA--SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            G          A   RI            +++  ++   + EQ  + + P     A+  
Sbjct: 397 KGFAGAHPGRGTAGRERI----------TQALIDPNVFGGSCEQLSLFTPP-----AVDD 441

Query: 167 LVNLGYGQDQATTAVVS 183
           L+  G     A   V  
Sbjct: 442 LITQGVAPRAAMRMVRE 458


>gi|256419940|ref|YP_003120593.1| recombination protein RecR [Chitinophaga pinensis DSM 2588]
 gi|256034848|gb|ACU58392.1| recombination protein RecR [Chitinophaga pinensis DSM 2588]
          Length = 205

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 98  LVESIILQNSKVIAQIPGISMKIASRIMTEL 128
              ++I       A++PGI  K A R++  L
Sbjct: 3   FSSALIENAVNEFARLPGIGKKTALRLVLHL 33


>gi|108803335|ref|YP_643272.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
 gi|108764578|gb|ABG03460.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
          Length = 574

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 7/97 (7%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             L  V G+G R    +   L   +A EL  +      + +   PG   K   R + E  
Sbjct: 94  RGLLGVPGLGPRRVRELHRRLGVESAAELERAAREGRVRRL---PGFGAKT-ERNILEAL 149

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
           G+                +              A+ A
Sbjct: 150 GRKERPQRFRLSAAEPAARALEEHLEGCGAVREAVVA 186


>gi|220903857|ref|YP_002479169.1| excinuclease ABC subunit C [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868156|gb|ACL48491.1| excinuclease ABC, C subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 687

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM------LLQSVQG 80
            I+ P R  +   + G    LF+  ++R    R   F     R+          L  + G
Sbjct: 583 RIFVPNRANALPLREGGQELLFL-QNIRDTTHR---FAIGRHRKARRGAALAGELMRLPG 638

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           VG   A  +     + E + +   ++   + +IPGI    AS ++ +L G
Sbjct: 639 VGPATARLLWDHFGSVEAMCAATQED---LRKIPGIGPAKASMLLEKLSG 685


>gi|325661793|ref|ZP_08150416.1| hypothetical protein HMPREF0490_01151 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472046|gb|EGC75261.1| hypothetical protein HMPREF0490_01151 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 486

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 24/129 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRL--FGFLSDL---DRQW-FMLLQ 76
           V Y  +  +     L   G+    L  E  + Q    L  +GF ++    ++Q  F +L 
Sbjct: 284 VFYSAFVHVNEDKALPAAGEQGPPLLREHRLYQADWLLRYYGFRAEELLDEQQPNFNVLL 343

Query: 77  SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
                  +   A+  L           +   +   + ++PGI  K A RI+     KA  
Sbjct: 344 D-----PKCNWALKHLEYFPVE-----VNRADYFTLLRVPGIGYKSAERIV-----KARR 388

Query: 135 LSSVVQQDM 143
           + S+  +D+
Sbjct: 389 MGSLSFEDL 397


>gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
 gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
          Length = 663

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 52/221 (23%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------- 74
            GV Y  +C   TLSC  ++       V  +  +D + + GF      Q F         
Sbjct: 415 NGVHY--FC-ENTLSCKPQM---VKTIVH-YASRDAMNIEGFSEKTAEQLFEKLDIKSIA 467

Query: 75  ---------LQSVQGVGARVAMGVLSRITAT---ELVESIILQNSKVIAQIPGISMKIAS 122
                    L  +   G + A  +L  +  +   EL   I          IP + +K A 
Sbjct: 468 DLYKLQKEELLQLDKFGPKKAQNLLDAVEKSKDCELYRFIYS------LGIPNVGVKTAK 521

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISA---LVNLGYG 173
               +L  K  SL  +       +   Q     +    +       A++    L+ LG  
Sbjct: 522 ----DLVNKFKSLEGLKSASFDDLVSVQDVGGIVAKCVLEFFKEEKAVNTINELLELGVN 577

Query: 174 QDQATTAVVSVLKKEKNIADDSQI-------IRLALRAISC 207
                  ++S   + K +     +       I+  L  +  
Sbjct: 578 PKFEEKQIISSPFEGKTVVVTGTLQNYSRGEIKAKLELLGA 618


>gi|289581729|ref|YP_003480195.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
 gi|289531282|gb|ADD05633.1| DNA mismatch repair protein MutS domain protein [Natrialba magadii
           ATCC 43099]
          Length = 739

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 40/151 (26%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM-----TE-- 127
           L+S+ GVG + A  +           ++   +   IA  PGI+   A+RI       E  
Sbjct: 25  LESIPGVGEKTARALSDLDDPE---RALRAGDVATIASAPGITQGRAARIARGAIRLEHD 81

Query: 128 ---------------------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
                                LK + ++  +  + +    +  ++ I  + +FA  AIS 
Sbjct: 82  DAGGFLATDRAREIYREILSLLKQRTVTDYAAQRVETFYPSSRRSRIEEVQTFAREAIS- 140

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
                    +A+ AV+  L+  + +     +
Sbjct: 141 --------REASPAVLEALEGVEPLRTPGDV 163


>gi|167769926|ref|ZP_02441979.1| hypothetical protein ANACOL_01267 [Anaerotruncus colihominis DSM
           17241]
 gi|167667917|gb|EDS12047.1| hypothetical protein ANACOL_01267 [Anaerotruncus colihominis DSM
           17241]
          Length = 753

 Score = 41.9 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V+GVG  +A  ++       L  +++ QN   +A+I GIS K A +I  E K K   + S
Sbjct: 106 VKGVGPAIARRLVRAFGDDTL--TVMEQNPAKLAEIQGISPKKAEQISNEYK-KLFGIRS 162

Query: 138 VV 139
           V+
Sbjct: 163 VM 164


>gi|38196143|gb|AAR13759.1| laminin [Anopheles gambiae]
          Length = 294

 Score = 41.9 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  +L  K    + +++   + +   +  +        +A+ AL  L Y ++QA  A
Sbjct: 168 ADRIAEDLATKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 227

Query: 181 VVS 183
           V  
Sbjct: 228 VAE 230


>gi|313887872|ref|ZP_07821551.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846038|gb|EFR33420.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 216

 Score = 41.9 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 102 IILQNSKVIAQIPGISMKIASRIM 125
           I   +   + +IPG+  K A +I+
Sbjct: 158 INSADLSELTKIPGVGEKTAQKII 181


>gi|150005913|ref|YP_001300657.1| exonuclease V subunit alpha [Bacteroides vulgatus ATCC 8482]
 gi|149934337|gb|ABR41035.1| ATP-dependent exonuclease V, alpha subunit - helicase superfamily I
           member [Bacteroides vulgatus ATCC 8482]
          Length = 753

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G + A  ++ +    E ++ I   + + + ++PGI  K   +I
Sbjct: 90  VKGIGPKFAQLIVRQFGL-ETIDVIET-DIERLYEVPGIGKKRVEKI 134


>gi|300812541|ref|ZP_07092959.1| transposase, IS116/IS110/IS902 family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496478|gb|EFK31582.1| transposase, IS116/IS110/IS902 family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 169

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 1   MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 52


>gi|116074853|ref|ZP_01472114.1| excinuclease ABC subunit C [Synechococcus sp. RS9916]
 gi|116068075|gb|EAU73828.1| excinuclease ABC subunit C [Synechococcus sp. RS9916]
          Length = 656

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           +R     L  + G+G +    +L+   +   +++I L +   ++  PG+   +A +I   
Sbjct: 580 ERMKRSRLSDIPGLGPKRIRDLLAHFNS---IDAIQLASVDQLSVAPGVGPSLAQQI--- 633

Query: 128 LKGKAISLSSVVQQDMSCVNKE 149
            +       S      S  + E
Sbjct: 634 -RDYFHPDESEAPALASTSDPE 654


>gi|325957162|ref|YP_004292574.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325333727|gb|ADZ07635.1| transposase [Lactobacillus acidophilus 30SC]
          Length = 365

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
           L   +      L+S+ G+G + A  +  R+    L +    ++ +++  IPGI+   A R
Sbjct: 187 LETKEADIIDFLKSLSGIGEKRANDLAQRL--IRLAKLAPKRDLEILKSIPGIAENTALR 244

Query: 124 IMTELKG 130
           I++EL  
Sbjct: 245 IISELGD 251


>gi|313681124|ref|YP_004058863.1| soluble ligand binding domain [Oceanithermus profundus DSM 14977]
 gi|313153839|gb|ADR37690.1| Soluble ligand binding domain [Oceanithermus profundus DSM 14977]
          Length = 171

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           R     L++V G+G  +A  +++      L E         + ++PGI  +   R+
Sbjct: 119 RASAEELEAVPGIGPALARRIVAYRPYRTLAE---------LVRVPGIGPRTLERL 165


>gi|254786407|ref|YP_003073836.1| excinuclease ABC subunit C [Teredinibacter turnerae T7901]
 gi|237683988|gb|ACR11252.1| excinuclease ABC, C subunit [Teredinibacter turnerae T7901]
          Length = 619

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 47  LFVETHMRQDQIRLFGFL---SDLDRQWFM---LLQSVQGVGARVAMGVLSRIT-ATELV 99
           L +   +R +  R   F        R        L+++ G+G +    +L       E++
Sbjct: 535 LHLIQQVRDEAHR---FAITGHKQRRDQARRTSTLENIPGIGPKRRREMLHYFGGLQEVM 591

Query: 100 ESIILQNSKVIAQIPGISMKIAS 122
            + I      +A++PGIS K+A 
Sbjct: 592 RASIDD----LAKVPGISKKMAE 610


>gi|242279487|ref|YP_002991616.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638]
 gi|242122381|gb|ACS80077.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638]
          Length = 602

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 14/94 (14%)

Query: 38  LGKIGDFCTLFVETHMRQDQIRLFGF------LSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           L   G    L     +R +  R   F       S   +     + S+ G+G + A  +  
Sbjct: 509 LPLKGGSPELLYLQRVRDEAHR---FVIGRQRKSRKKKVLQSEVLSLPGIGPKTARLLWD 565

Query: 92  RI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
              +  ++ E+  +++   ++ + GI  K A +I
Sbjct: 566 EFGSVQKMKEA-SVED---LSNVQGIGKKRAQQI 595


>gi|87124468|ref|ZP_01080317.1| excinuclease ABC, C subunit [Synechococcus sp. RS9917]
 gi|86168040|gb|EAQ69298.1| excinuclease ABC, C subunit [Synechococcus sp. RS9917]
          Length = 659

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R     L  + G+G +    +L    +   +++I L   + +A  PGI   +A +I
Sbjct: 570 ERMKRSRLSDIPGLGPKRVRDLLGHFHS---IDAIQLAPIERLAAAPGIGRSLAEQI 623


>gi|302875860|ref|YP_003844493.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B]
 gi|307689293|ref|ZP_07631739.1| helicase, RecD/TraA family protein [Clostridium cellulovorans 743B]
 gi|302578717|gb|ADL52729.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B]
          Length = 737

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           VQG+G   A  ++       L   I+ ++ + + +I GI  K
Sbjct: 88  VQGIGPVTARKIVQHFGNDALR--IMEEDIERLKEIEGIGAK 127


>gi|313124619|ref|YP_004034878.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312281182|gb|ADQ61901.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 424

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+S+ G+G + A                             M + + ++
Sbjct: 204 LETKEADIIDFLKSLSGIGEKRANDLAQRLIRLAKLACPAVKKSSAHIRGLEMAINNILS 263

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  +S + +        + +++  IPGI    A RI++EL  
Sbjct: 264 AEEECQSALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 307


>gi|104773967|ref|YP_618947.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423048|emb|CAI97739.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSSHIRGLKMAINNTLS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|46204531|ref|ZP_00049860.2| COG0507: ATP-dependent exoDNAse (exonuclease V), alpha subunit -
           helicase superfamily I member [Magnetospirillum
           magnetotacticum MS-1]
          Length = 565

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G+G  +A  +++     E V  II      + ++ GI  K A+RI+
Sbjct: 101 GIGPAMAKRIVATFG--EAVFEIIEAEPARLTEVEGIGPKRAARIV 144


>gi|39998418|ref|NP_954369.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39985365|gb|AAR36719.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
 gi|298507363|gb|ADI86086.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 431

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 26/128 (20%)

Query: 24  VCYIIYCPIRTLSCLGKI------GDFCTLFVETHMRQDQIRLFGFLS----DLDRQWFM 73
           V Y  +  +     L  +           L+         +R +GF +    D +R    
Sbjct: 252 VYYSAFISVNRDERLPAVVGTPPLAREHRLY----QADWLMRYYGFAAGELLDEERPNLD 307

Query: 74  LLQSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           L         +   A+  L           +   + + + ++PGI ++ A RI+   +G 
Sbjct: 308 LSLD-----PKAGWALRNLHLFPVE-----VNRADYEALLRVPGIGVRSAQRIVLARRGS 357

Query: 132 AISLSSVV 139
            +SL  + 
Sbjct: 358 HLSLDDLP 365


>gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 766

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 66  DLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             +R+    + S    +G + A  +L    +   ++ I+  N + +  +PGI  KIA + 
Sbjct: 701 RSERESLEYVISSFPSIGPKNARDLLDHFGS---IQDIMNANIEELKVVPGIGDKIA-KS 756

Query: 125 MTELKGK 131
           + EL  K
Sbjct: 757 VFELSRK 763


>gi|254775922|ref|ZP_05217438.1| Holliday junction DNA helicase RuvA [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 47

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            + ALV LG+   QA  A   VL  E   A  S  +R AL  +
Sbjct: 2   VVEALVGLGFAAKQAEEATDKVLAAEPE-AGTSGALRAALSLL 43


>gi|304317599|ref|YP_003852744.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302779101|gb|ADL69660.1| Radical SAM domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 424

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +V  A+  LS          +   +  ++ ++PGI +K A RI+
Sbjct: 309 PKVDWALKNLSLFPVE-----VNTADYNMLLRVPGIGVKTAKRII 348


>gi|78043654|ref|YP_360397.1| DNA polymerase family X protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995769|gb|ABB14668.1| DNA polymerase, X family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 550

 Score = 41.6 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           L  + G+G + A  +        L E   L  +  + +IPGI  K   +I+ 
Sbjct: 92  LLKIPGIGVKTAKQIYETYRPNTLDEVESLAKAHKLKEIPGIGSKTEQQILV 143


>gi|332970835|gb|EGK09814.1| radical SAM domain protein [Psychrobacter sp. 1501(2011)]
          Length = 422

 Score = 41.6 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL--D-RQWFMLLQSV 78
           V Y  Y P+ + S L  IG    +  E   +     +R +GF +    + +  F+ L+  
Sbjct: 256 VYYSGYVPMLSDSRLPAIGTPVPMVRENRLYQADWLMRFYGFGAHEILEPKDPFLDLEC- 314

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                ++A  +  R        +I     +VI ++PGI +K A +I+
Sbjct: 315 ---DPKLAWAIRHR---EHFPVNIQTAPYEVIVRVPGIGVKTAKKIV 355


>gi|296269731|ref|YP_003652363.1| helicase, RecD/TraA family [Thermobispora bispora DSM 43833]
 gi|296092518|gb|ADG88470.1| helicase, RecD/TraA family [Thermobispora bispora DSM 43833]
          Length = 746

 Score = 41.6 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G ++A  +++      L   +I +  + + ++PG+  K
Sbjct: 105 IKGIGPKMAERIVNHFGTDTLR--VIEEEPERLTEVPGLGPK 144


>gi|328544243|ref|YP_004304352.1| DNA polymerase [polymorphum gilvum SL003B-26A1]
 gi|326413985|gb|ADZ71048.1| DNA polymerase domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 303

 Score = 41.6 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            K+   IPGI  K+A R+  EL          ++   + ++ E A +  +      AI+A
Sbjct: 116 EKLFQTIPGIGPKLAERLAGEL------HLETLEDLEAALHLEAAPLKGLGPRRREAITA 169

Query: 167 LVN--LG 171
           ++   LG
Sbjct: 170 ILAERLG 176


>gi|257387068|ref|YP_003176841.1| DNA mismatch repair protein MutS [Halomicrobium mukohataei DSM
           12286]
 gi|257169375|gb|ACV47134.1| DNA mismatch repair protein MutS domain protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 688

 Score = 41.6 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            L+SV GVG + A  +           ++   +   +AQ PGI
Sbjct: 2   ELESVSGVGEKTAAALAELDDPE---RALREGDVATLAQAPGI 41


>gi|145629081|ref|ZP_01784880.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21]
 gi|144978584|gb|EDJ88307.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21]
          Length = 553

 Score = 41.6 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 500 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 552


>gi|298246013|ref|ZP_06969819.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297553494|gb|EFH87359.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 589

 Score = 41.6 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           + +  + GVG +    +   L   T  EL ++   ++ K +A+IPG   K   +I+
Sbjct: 92  LEMMRIPGVGPKKINAIYDQLHVTTLAELEQAC--KDDK-VAKIPGFGKKTQEKIL 144


>gi|85859218|ref|YP_461420.1| SMF family protein involved in DNA uptake [Syntrophus
           aciditrophicus SB]
 gi|85722309|gb|ABC77252.1| SMF family protein involved in DNA uptake [Syntrophus
           aciditrophicus SB]
          Length = 394

 Score = 41.6 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            +  ++M L+SV G+G      ++       ++  +   Q+   +  +PGI  K ASRI
Sbjct: 4   DELIYWMALRSVNGIGNLGFRSLMDAFKFPHDVFHA-SYQD---LMSVPGIGPKTASRI 58


>gi|260582025|ref|ZP_05849820.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127]
 gi|260094915|gb|EEW78808.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127]
          Length = 609

 Score = 41.6 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608


>gi|311898903|dbj|BAJ31311.1| putative UvrABC system protein C [Kitasatospora setae KM-6054]
          Length = 675

 Score = 41.6 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI- 93
           L  L ++ D    F  T+ R              R     L SV G+G      +L    
Sbjct: 561 LYLLQRVRDEAHRFAITYQR---------AKRAKRLTAGELDSVPGLGETRRRALLKHFG 611

Query: 94  TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153
           +  +L  + + +    + ++PGI  + A  +   L  +  S  +V       ++   A  
Sbjct: 612 SLKKLRAATVDE----LCEVPGIGRRTAETVAAALASRTPSAFAVNTATGEIIDDSTATA 667

Query: 154 CSMPSFA 160
                  
Sbjct: 668 GPRSGEE 674


>gi|319896470|ref|YP_004134663.1| uvrabc system protein c [Haemophilus influenzae F3031]
 gi|317431972|emb|CBY80320.1| UvrABC system protein C [Haemophilus influenzae F3031]
          Length = 609

 Score = 41.6 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608


>gi|257421910|ref|ZP_05598900.1| competence protein comEA [Enterococcus faecalis X98]
 gi|257163734|gb|EEU93694.1| competence protein comEA [Enterococcus faecalis X98]
 gi|315155383|gb|EFT99399.1| comEA protein [Enterococcus faecalis TX0043]
          Length = 225

 Score = 41.6 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|189500701|ref|YP_001960171.1| excinuclease ABC subunit C [Chlorobium phaeobacteroides BS1]
 gi|189496142|gb|ACE04690.1| excinuclease ABC, C subunit [Chlorobium phaeobacteroides BS1]
          Length = 628

 Score = 41.6 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 31  PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
               L  L +I D    F  T+ R     L        R    +L  + G+G + AM +L
Sbjct: 532 TSPALKLLQRIRDEAHRFAITYHR----TL-----RKSRTLTTILTEIPGIGEKSAMKLL 582

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           S   +   +E I   + K + +I     + A  I  
Sbjct: 583 SHFGS---IEQIAKADRKELMKIT--GPRTAEAIAL 613


>gi|289549356|ref|YP_003474344.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182973|gb|ADC90217.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 574

 Score = 41.6 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 73  MLLQSVQGVGARV---AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TE 127
           + L  V G+G +    A   L   +  + V ++      V+A +PG+  K    IM   E
Sbjct: 92  LELLDVPGIGPKTLKLAYDKLGIRSKDDFVRAVRSG---VLASLPGMGEKKLQNIMRGLE 148

Query: 128 LKGKAISLSSVVQQ 141
           L  +A    S+++ 
Sbjct: 149 LYERAKERMSLIEA 162


>gi|229846976|ref|ZP_04467082.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1]
 gi|229810060|gb|EEP45780.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1]
          Length = 609

 Score = 41.6 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608


>gi|332704247|ref|ZP_08424335.1| UvrABC system protein C [Desulfovibrio africanus str. Walvis Bay]
 gi|332554396|gb|EGJ51440.1| UvrABC system protein C [Desulfovibrio africanus str. Walvis Bay]
          Length = 604

 Score = 41.6 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            L S+  +G + A  +  R  + + + +      K    IPG+  K A RI+  L  
Sbjct: 544 ELLSLPSIGPKTARLLWERFDSVDAMLAAAPDEIK---SIPGLGGKRAERILASLND 597


>gi|145636737|ref|ZP_01792403.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH]
 gi|145270035|gb|EDK09972.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH]
          Length = 609

 Score = 41.6 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608


>gi|145635242|ref|ZP_01790946.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA]
 gi|145267521|gb|EDK07521.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA]
          Length = 609

 Score = 41.6 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608


>gi|309972809|gb|ADO96010.1| Excinuclease ABC subunit C [Haemophilus influenzae R2846]
          Length = 609

 Score = 41.6 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608


>gi|300770008|ref|ZP_07079887.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762484|gb|EFK59301.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 370

 Score = 41.6 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  V+G+G R++  +LS       VE+I   + K +  IPGI++ I  R+
Sbjct: 9   LTKVKGIGPRLSRSLLSHCDT---VEAIFTASKKQLLTIPGINIAIIERL 55


>gi|229845394|ref|ZP_04465525.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1]
 gi|229811702|gb|EEP47400.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1]
          Length = 609

 Score = 41.6 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608


>gi|16272031|ref|NP_438230.1| excinuclease ABC subunit C [Haemophilus influenzae Rd KW20]
 gi|260580639|ref|ZP_05848466.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW]
 gi|1174920|sp|P44489|UVRC_HAEIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|1573005|gb|AAC21735.1| excinuclease ABC, subunit C (uvrC) [Haemophilus influenzae Rd KW20]
 gi|260092701|gb|EEW76637.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW]
          Length = 609

 Score = 41.6 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608


>gi|300214767|gb|ADJ79183.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Lactobacillus salivarius CECT 5713]
          Length = 592

 Score = 41.6 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 21/100 (21%)

Query: 35  LSCLGKIGDFCTLFVETHMRQ----DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
              L +I D    F  T  RQ    + +      S L+R        +QGVG +  + +L
Sbjct: 508 FYLLQRIQDEVHRFAITFHRQVRSKNSL-----ASRLER--------IQGVGPKTRIKLL 554

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
               + + + +  +++ + +    GIS K+A  I   LK 
Sbjct: 555 RNYGSLKNISAASVEDLESL----GISKKVAQTIKLSLKN 590


>gi|90962073|ref|YP_535989.1| excinuclease ABC subunit C [Lactobacillus salivarius UCC118]
 gi|119367662|sp|Q1WT45|UVRC_LACS1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|90821267|gb|ABD99906.1| Excinuclease ABC subunit C [Lactobacillus salivarius UCC118]
          Length = 590

 Score = 41.6 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 21/100 (21%)

Query: 35  LSCLGKIGDFCTLFVETHMRQ----DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
              L +I D    F  T  RQ    + +      S L+R        +QGVG +  + +L
Sbjct: 508 FYLLQRIQDEVHRFAITFHRQVRSKNSL-----ASRLER--------IQGVGPKTRIKLL 554

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
               + + + +  +++ + +    GIS K+A  I   LK 
Sbjct: 555 RNYGSLKNISAASVEDLESL----GISKKVAQTIKLSLKN 590


>gi|301300877|ref|ZP_07207049.1| excinuclease ABC, C subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851476|gb|EFK79188.1| excinuclease ABC, C subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 592

 Score = 41.6 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 21/100 (21%)

Query: 35  LSCLGKIGDFCTLFVETHMRQ----DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
              L +I D    F  T  RQ    + +      S L+R        +QGVG +  + +L
Sbjct: 508 FYLLQRIQDEVHRFAITFHRQVRSKNSL-----ASRLER--------IQGVGPKTRIKLL 554

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
               + + + +  +++ + +    GIS K+A  I   LK 
Sbjct: 555 RNYGSLKNISAASVEDLESL----GISKKVAQTIKLSLKN 590


>gi|229545130|ref|ZP_04433855.1| competence protein comEA [Enterococcus faecalis TX1322]
 gi|229309675|gb|EEN75662.1| competence protein comEA [Enterococcus faecalis TX1322]
 gi|315144857|gb|EFT88873.1| comEA protein [Enterococcus faecalis TX2141]
          Length = 225

 Score = 41.6 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|227891094|ref|ZP_04008899.1| excinuclease ABC subunit C [Lactobacillus salivarius ATCC 11741]
 gi|227866968|gb|EEJ74389.1| excinuclease ABC subunit C [Lactobacillus salivarius ATCC 11741]
          Length = 592

 Score = 41.6 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 21/100 (21%)

Query: 35  LSCLGKIGDFCTLFVETHMRQ----DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
              L +I D    F  T  RQ    + +      S L+R        +QGVG +  + +L
Sbjct: 508 FYLLQRIQDEVHRFAITFHRQVRSKNSL-----ASRLER--------IQGVGPKTRIKLL 554

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
               + + + +  +++ + +    GIS K+A  I   LK 
Sbjct: 555 RNYGSLKNISAASVEDLESL----GISKKVAQTIKLSLKN 590


>gi|218887930|ref|YP_002437251.1| excinuclease ABC subunit C [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218758884|gb|ACL09783.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 762

 Score = 41.6 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ V+GVG + A  +  R      + +      K +A++PGI  + A +I
Sbjct: 702 ELQRVEGVGPKTARLLWDRFGTLAAMRAASE---KELAEVPGIGPRRARQI 749


>gi|227553982|ref|ZP_03984029.1| competence protein comEA [Enterococcus faecalis HH22]
 gi|227176885|gb|EEI57857.1| competence protein comEA [Enterococcus faecalis HH22]
 gi|315170252|gb|EFU14269.1| comEA protein [Enterococcus faecalis TX1342]
 gi|315574318|gb|EFU86509.1| comEA protein [Enterococcus faecalis TX0309B]
 gi|315580207|gb|EFU92398.1| comEA protein [Enterococcus faecalis TX0309A]
          Length = 225

 Score = 41.6 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|156937657|ref|YP_001435453.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
 gi|156566641|gb|ABU82046.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
          Length = 212

 Score = 41.6 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 96  TELVESIILQNSKVIAQIPGISMKIA 121
            E+ ++I   +  V+ +I GI  K A
Sbjct: 100 EEVKKAIEKGDKGVLTRIKGIGEKTA 125


>gi|327535733|gb|AEA94567.1| competence protein comEA [Enterococcus faecalis OG1RF]
          Length = 114

 Score = 41.6 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 61  ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 106


>gi|315161634|gb|EFU05651.1| comEA protein [Enterococcus faecalis TX0645]
          Length = 225

 Score = 41.6 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|193215119|ref|YP_001996318.1| excinuclease ABC subunit C [Chloroherpeton thalassium ATCC 35110]
 gi|193088596|gb|ACF13871.1| excinuclease ABC, C subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 640

 Score = 41.6 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 32/145 (22%)

Query: 6   KGNIEGLYEDYVLIDVQGVCY----------IIYCPIRTLS-CLGKIGDFCTLFVETHMR 54
           KG +      Y ++   GV             ++ P   L   L K      L     +R
Sbjct: 509 KGQLSS---AYAVLQKSGVGVPVIGLAKRLEEVFFPNEQLPHNLPKTSSSLKLL--QQVR 563

Query: 55  QDQIRLFGFLSDLDRQWFML------LQSVQGVGARVAMGVLSRI-TATELVESIILQNS 107
            +  R   F     R+          L  ++G+G   A  +L    +  E+ ++    ++
Sbjct: 564 DEAHR---FAITFHRELRSKRTLQTELTEIEGIGKTKAEKLLKTFGSVAEVKKA----SA 616

Query: 108 KVIAQIPGISMKIASRIMTELKGKA 132
           + +A+   +  K A RI    +GKA
Sbjct: 617 EALAEA--VGKKAAERIFAHFQGKA 639


>gi|315166355|gb|EFU10372.1| comEA protein [Enterococcus faecalis TX1341]
          Length = 225

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|315025364|gb|EFT37296.1| comEA protein [Enterococcus faecalis TX2137]
          Length = 225

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|256961257|ref|ZP_05565428.1| competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecalis Merz96]
 gi|293383541|ref|ZP_06629451.1| competence protein comEA [Enterococcus faecalis R712]
 gi|293387346|ref|ZP_06631902.1| competence protein comEA [Enterococcus faecalis S613]
 gi|312906091|ref|ZP_07765103.1| comEA protein [Enterococcus faecalis DAPTO 512]
 gi|312909437|ref|ZP_07768292.1| comEA protein [Enterococcus faecalis DAPTO 516]
 gi|256951753|gb|EEU68385.1| competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecalis Merz96]
 gi|291079053|gb|EFE16417.1| competence protein comEA [Enterococcus faecalis R712]
 gi|291083244|gb|EFE20207.1| competence protein comEA [Enterococcus faecalis S613]
 gi|310627737|gb|EFQ11020.1| comEA protein [Enterococcus faecalis DAPTO 512]
 gi|311290110|gb|EFQ68666.1| comEA protein [Enterococcus faecalis DAPTO 516]
          Length = 225

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|317481235|ref|ZP_07940306.1| RecD/TraA family helicase [Bacteroides sp. 4_1_36]
 gi|316902568|gb|EFV24451.1| RecD/TraA family helicase [Bacteroides sp. 4_1_36]
          Length = 748

 Score = 41.6 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G + A  ++++     +   +I  N + + ++PGI  K   +I
Sbjct: 90  VKGIGPKFAKLIVAKFGLETID--VIESNIERLHEVPGIGKKRVEKI 134


>gi|119367854|sp|Q3AXU8|UVRC_SYNS9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 661

 Score = 41.2 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R     L  + G+GA+    +LS   +   +++I L +   +++ PG+   +A  I
Sbjct: 581 ERMKRSRLSDIPGLGAKRVRDLLSHFHS---IDAIQLASVDTLSKAPGVGPVLAQDI 634


>gi|78184688|ref|YP_377123.1| excinuclease ABC subunit C [Synechococcus sp. CC9902]
 gi|78168982|gb|ABB26079.1| Excinuclease ABC subunit C [Synechococcus sp. CC9902]
          Length = 679

 Score = 41.2 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R     L  + G+GA+    +LS   +   +++I L +   +++ PG+   +A  I
Sbjct: 599 ERMKRSRLSDIPGLGAKRVRDLLSHFHS---IDAIQLASVDTLSKAPGVGPVLAQDI 652


>gi|75911053|ref|YP_325349.1| phospholipase D/transphosphatidylase [Anabaena variabilis ATCC
           29413]
 gi|75704778|gb|ABA24454.1| Phospholipase D/Transphosphatidylase [Anabaena variabilis ATCC
           29413]
          Length = 528

 Score = 41.2 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           S +T T++V  I   N   +  +PG+  K+A +I+T
Sbjct: 461 SELTPTQVVN-INTANLAELETLPGVGKKLAQKIIT 495


>gi|332535897|ref|ZP_08411612.1| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034713|gb|EGI71260.1| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis ANT/505]
          Length = 586

 Score = 41.2 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 47  LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99
           L +  H+R +  R   F           ++   LL+ + GVG++    +L  +     + 
Sbjct: 501 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEINGVGSKRRQTLLKYLGGMQGVK 557

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
            +    N + + ++PGIS  +A +I   L  K
Sbjct: 558 AA----NIEQLKKVPGISPDMAEKIFNHLHDK 585


>gi|312899879|ref|ZP_07759197.1| comEA protein [Enterococcus faecalis TX0470]
 gi|311292875|gb|EFQ71431.1| comEA protein [Enterococcus faecalis TX0470]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|71280471|ref|YP_269952.1| excinuclease ABC subunit C [Colwellia psychrerythraea 34H]
 gi|90111063|sp|Q47Z18|UVRC_COLP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71146211|gb|AAZ26684.1| excinuclease ABC, C subunit [Colwellia psychrerythraea 34H]
          Length = 639

 Score = 41.2 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           L+S++G+GA+    +L+ +    E++++    +   +A++PGIS  +A +I   L  K
Sbjct: 586 LESIEGIGAKKRQSLLTFLGGLQEVMQA----DITALAKVPGISHVLAEKIHNALHDK 639


>gi|256763141|ref|ZP_05503721.1| competence protein comEA [Enterococcus faecalis T3]
 gi|256684392|gb|EEU24087.1| competence protein comEA [Enterococcus faecalis T3]
          Length = 211

 Score = 41.2 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203


>gi|225019213|ref|ZP_03708405.1| hypothetical protein CLOSTMETH_03166 [Clostridium methylpentosum
           DSM 5476]
 gi|224948017|gb|EEG29226.1| hypothetical protein CLOSTMETH_03166 [Clostridium methylpentosum
           DSM 5476]
          Length = 737

 Score = 41.2 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 69  RQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           R     L S  ++G+G  +A  ++S      L    I Q+ + + Q+ GIS K+A  ++ 
Sbjct: 83  RAIRKFLSSGAIKGIGPALAERIVSMFGEQTLER--IQQDPECLTQVKGISQKMAENLIC 140

Query: 127 E 127
           E
Sbjct: 141 E 141


>gi|116513882|ref|YP_812788.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093197|gb|ABJ58350.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 335

 Score = 41.2 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 34/101 (33%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ-----NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +     + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTAMAKLAPKRDLEILTSIPGIGENTALRIISELGD 287


>gi|160871757|ref|ZP_02061889.1| excinuclease ABC, C subunit [Rickettsiella grylli]
 gi|159120556|gb|EDP45894.1| excinuclease ABC, C subunit [Rickettsiella grylli]
          Length = 608

 Score = 41.2 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L+ + G+GA+    +L +      L  +   ++   +A++PGIS ++A +I   LK
Sbjct: 556 LEDIPGIGAKRRRELLRQFGGLHALKNA-SAED---LAKVPGISKRLAEQIYFALK 607


>gi|315164894|gb|EFU08911.1| comEA protein [Enterococcus faecalis TX1302]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|302765759|ref|XP_002966300.1| hypothetical protein SELMODRAFT_86216 [Selaginella moellendorffii]
 gi|300165720|gb|EFJ32327.1| hypothetical protein SELMODRAFT_86216 [Selaginella moellendorffii]
          Length = 779

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
           D   ++   +H  S  +   NA+ ALV LG+  D A  A+ +         D ++ I
Sbjct: 636 DDPDIDVPYSHSSSNANVDENAVQALVALGFSADLARKALRA---TGGRTEDAAEWI 689


>gi|313203551|ref|YP_004042208.1| DNA replication and repair protein recr [Paludibacter
           propionicigenes WB4]
 gi|312442867|gb|ADQ79223.1| DNA replication and repair protein RecR [Paludibacter
           propionicigenes WB4]
          Length = 207

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 93  ITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           ++  +   S++       A++PGI  K A R++  L
Sbjct: 1   MSLQQFSSSLLENAVNEFAKLPGIGRKTALRLVLHL 36


>gi|148653584|ref|YP_001280677.1| radical SAM domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148572668|gb|ABQ94727.1| Radical SAM domain protein [Psychrobacter sp. PRwf-1]
          Length = 422

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL--D-RQWFMLLQSV 78
           V Y  Y P+ + S L  IG    L  E   +     +R +GF +    + +  F+ L   
Sbjct: 256 VYYSGYVPMLSDSRLPAIGTPVPLVRENRLYQADWLMRFYGFAAHEIVEPQSPFLDL--- 312

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                ++A  +  R        +I     +VI ++PGI +K A +I+
Sbjct: 313 -DCDPKLAWAIRHR---EHFPVNIQTAPYEVILRVPGIGVKTAKKII 355


>gi|229549378|ref|ZP_04438103.1| competence protein comEA [Enterococcus faecalis ATCC 29200]
 gi|307270791|ref|ZP_07552081.1| comEA protein [Enterococcus faecalis TX4248]
 gi|307287671|ref|ZP_07567714.1| comEA protein [Enterococcus faecalis TX0109]
 gi|312953530|ref|ZP_07772368.1| comEA protein [Enterococcus faecalis TX0102]
 gi|229305615|gb|EEN71611.1| competence protein comEA [Enterococcus faecalis ATCC 29200]
 gi|306501409|gb|EFM70712.1| comEA protein [Enterococcus faecalis TX0109]
 gi|306512905|gb|EFM81547.1| comEA protein [Enterococcus faecalis TX4248]
 gi|310628542|gb|EFQ11825.1| comEA protein [Enterococcus faecalis TX0102]
 gi|315152020|gb|EFT96036.1| comEA protein [Enterococcus faecalis TX0031]
 gi|315159041|gb|EFU03058.1| comEA protein [Enterococcus faecalis TX0312]
 gi|329572336|gb|EGG53993.1| comEA protein [Enterococcus faecalis TX1467]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|29376943|ref|NP_816097.1| competence protein comEA [Enterococcus faecalis V583]
 gi|29344408|gb|AAO82167.1| competence protein comEA [Enterococcus faecalis V583]
          Length = 214

 Score = 41.2 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 206


>gi|193213418|ref|YP_001999371.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327]
 gi|193086895|gb|ACF12171.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327]
          Length = 387

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
           ++L  + G+G   A  +++   +     +++  +++ + QIPGI   +A +
Sbjct: 15  LMLSKLPGIGPARARTMIATFGSG---STLLEADAEALIQIPGIGKTLARQ 62


>gi|116514191|ref|YP_813097.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093506|gb|ABJ58659.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 158

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 93  ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            +  E+ +    ++ +++  IPGI    A RI++EL  
Sbjct: 4   CSLQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 41


>gi|116070556|ref|ZP_01467825.1| excinuclease ABC subunit C [Synechococcus sp. BL107]
 gi|116065961|gb|EAU71718.1| excinuclease ABC subunit C [Synechococcus sp. BL107]
          Length = 661

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R     L  + G+GA+    +LS   +   +++I L +   +A+ PG+   +A  I
Sbjct: 581 ERMKRSRLSDIPGLGAKRVRDLLSHFHS---IDAIQLASVDTLAKAPGVGPVLAQDI 634


>gi|81300178|ref|YP_400386.1| recombination protein RecR [Synechococcus elongatus PCC 7942]
 gi|81169059|gb|ABB57399.1| DNA replication and repair protein RecR [Synechococcus elongatus
           PCC 7942]
          Length = 211

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 88  GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
            ++S  T   L   I       + ++PG+  K A R+   L
Sbjct: 11  AIVSVYTRP-LARLIEH-----LQKLPGVGPKTAQRLALHL 45


>gi|304313782|ref|YP_003848929.1| helicase [Methanothermobacter marburgensis str. Marburg]
 gi|302587241|gb|ADL57616.1| predicted helicase [Methanothermobacter marburgensis str. Marburg]
          Length = 736

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
           L+  ++Q F+ ++S+  +G++ A  +L    +   VE+++  + K + ++ GI  +IAS 
Sbjct: 664 LTLQEKQLFI-VESLPYIGSKYARRLLESFGS---VEAVMNASEKELMEVEGIGKRIASE 719

Query: 124 I 124
           I
Sbjct: 720 I 720


>gi|315032943|gb|EFT44875.1| comEA protein [Enterococcus faecalis TX0017]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|257079680|ref|ZP_05574041.1| competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecalis JH1]
 gi|256987710|gb|EEU75012.1| competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecalis JH1]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|227519833|ref|ZP_03949882.1| competence protein comEA [Enterococcus faecalis TX0104]
 gi|227072723|gb|EEI10686.1| competence protein comEA [Enterococcus faecalis TX0104]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|119471718|ref|ZP_01614078.1| excinuclease ABC subunit C [Alteromonadales bacterium TW-7]
 gi|119445341|gb|EAW26629.1| excinuclease ABC subunit C [Alteromonadales bacterium TW-7]
          Length = 607

 Score = 41.2 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 47  LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99
           L +  H+R +  R   F           ++   LL+ + GVG++    +L  +     + 
Sbjct: 522 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEINGVGSKRRQTLLKYLGGMQGVK 578

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
            +    N + + ++PGIS  +A +I   L  K
Sbjct: 579 AA----NIEQLKKVPGISPDMAEKIFNHLHDK 606


>gi|315174006|gb|EFU18023.1| comEA protein [Enterococcus faecalis TX1346]
          Length = 182

 Score = 41.2 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 129 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 174


>gi|312905173|ref|ZP_07764294.1| comEA protein [Enterococcus faecalis TX0635]
 gi|310631563|gb|EFQ14846.1| comEA protein [Enterococcus faecalis TX0635]
 gi|315579111|gb|EFU91302.1| comEA protein [Enterococcus faecalis TX0630]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|257081973|ref|ZP_05576334.1| competence protein comEA [Enterococcus faecalis E1Sol]
 gi|256990003|gb|EEU77305.1| competence protein comEA [Enterococcus faecalis E1Sol]
          Length = 211

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203


>gi|255972084|ref|ZP_05422670.1| predicted protein [Enterococcus faecalis T1]
 gi|255963102|gb|EET95578.1| predicted protein [Enterococcus faecalis T1]
          Length = 220

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 167 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 212


>gi|93005656|ref|YP_580093.1| radical SAM family protein [Psychrobacter cryohalolentis K5]
 gi|92393334|gb|ABE74609.1| Radical SAM [Psychrobacter cryohalolentis K5]
          Length = 422

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 12/107 (11%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL--DRQW-FMLLQSV 78
           V Y  Y P+ + S L  IG    +  E   +     +R +GF +    +    F+ L   
Sbjct: 256 VYYSGYVPMLSDSRLPAIGTPVPMIRENRLYQADWLMRFYGFGAHEIVEPDSPFLDL--- 312

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                ++A  +  R        +I   + ++I +IPGI  K A +I+
Sbjct: 313 -DCDPKLAWAIRHR---DHFPVNIQTASYEMIVRIPGIGTKTAKKIV 355


>gi|329895078|ref|ZP_08270823.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC3088]
 gi|328922523|gb|EGG29861.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC3088]
          Length = 606

 Score = 41.2 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 25/138 (18%)

Query: 7   GNIEGLY-EDYVLIDVQGV--------CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           G +E L  ED V+I   GV         +       T        D   L +  ++R + 
Sbjct: 475 GVLEALQIEDIVVI---GVAKGTTRKAGFETLINGATGKEWQLQSDDPALHLIQYIRDES 531

Query: 58  IRLFGFL-----SDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIA 111
            R   F      +   +Q    L+S+ GVGA+    +L    +A  +  +    N + + 
Sbjct: 532 HR---FAITGHRARRAKQHQSALESIPGVGAKRRRDLLRHFGSAQGVKGA----NIEELI 584

Query: 112 QIPGISMKIASRIMTELK 129
           ++PGI+  +A +I+  L+
Sbjct: 585 KVPGINRALAEQIVEHLQ 602


>gi|307285768|ref|ZP_07565902.1| comEA protein [Enterococcus faecalis TX0860]
 gi|306502529|gb|EFM71796.1| comEA protein [Enterococcus faecalis TX0860]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|146307397|ref|YP_001187862.1| excinuclease ABC subunit C [Pseudomonas mendocina ymp]
 gi|189038075|sp|A4XUW4|UVRC_PSEMY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|145575598|gb|ABP85130.1| Excinuclease ABC subunit C [Pseudomonas mendocina ymp]
          Length = 607

 Score = 41.2 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V G+G +    +L+      EL  +   +    IA+ PGIS K+A  I
Sbjct: 553 TLEEVAGIGPKRRRELLNHFGGLQELSRASAEE----IAKAPGISKKLAELI 600


>gi|257087479|ref|ZP_05581840.1| competence protein comEA [Enterococcus faecalis D6]
 gi|256995509|gb|EEU82811.1| competence protein comEA [Enterococcus faecalis D6]
          Length = 211

 Score = 41.2 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203


>gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1]
 gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1]
          Length = 750

 Score = 41.2 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           +G + A  +L+   +   +++II    + + Q+PGI  K A  ++ EL
Sbjct: 701 LGPKYARALLTAFGS---LKAIIDAEKEELLQVPGIGAKKAE-MIYEL 744


>gi|327480699|gb|AEA84009.1| excinuclease ABC subunit C [Pseudomonas stutzeri DSM 4166]
          Length = 607

 Score = 41.2 bits (96), Expect = 0.100,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V G+G +    +L+      EL  + + +    IA+ PGIS K+A  I
Sbjct: 553 TLEDVPGIGPKRRRELLTHFGGLQELCRASLDE----IAKAPGISKKLAESI 600


>gi|297545157|ref|YP_003677459.1| excinuclease ABC subunit C [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842932|gb|ADH61448.1| excinuclease ABC, C subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 615

 Score = 41.2 bits (96), Expect = 0.100,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 17/99 (17%)

Query: 27  IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            I  P+ T     + +I +    F  T  ++             +++   L ++ G+G +
Sbjct: 523 EIDIPMTTKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572

Query: 85  VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
            A  +     +  E+  +  +++   + ++ G++ K A 
Sbjct: 573 RAKALYDAFNSIEEIKRA-SVED---LKKVKGMNEKAAQ 607


>gi|330503310|ref|YP_004380179.1| excinuclease ABC subunit C [Pseudomonas mendocina NK-01]
 gi|328917596|gb|AEB58427.1| excinuclease ABC subunit C [Pseudomonas mendocina NK-01]
          Length = 607

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V G+G +    +L+      EL  +   +    IA+ PGIS K+A  I
Sbjct: 553 TLEEVAGIGPKRRRELLNHFGGLQELSRASAEE----IAKAPGISKKLAELI 600


>gi|294780838|ref|ZP_06746193.1| comEA protein [Enterococcus faecalis PC1.1]
 gi|294452083|gb|EFG20530.1| comEA protein [Enterococcus faecalis PC1.1]
          Length = 214

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 206


>gi|269127991|ref|YP_003301361.1| Helix-hairpin-helix DNA-binding class 1 [Thermomonospora curvata
           DSM 43183]
 gi|268312949|gb|ACY99323.1| Helix-hairpin-helix DNA-binding class 1 [Thermomonospora curvata
           DSM 43183]
          Length = 147

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI 120
             L +V G+G + A+ +   L   +   L E+I       +  + G   K 
Sbjct: 89  RNLLAVPGLGPKRALQLHTELGVDSPQALAEAIRQG---RLDGVRGFGPKT 136


>gi|315030172|gb|EFT42104.1| comEA protein [Enterococcus faecalis TX4000]
          Length = 225

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|262373562|ref|ZP_06066840.1| DNA-binding protein [Acinetobacter junii SH205]
 gi|262311315|gb|EEY92401.1| DNA-binding protein [Acinetobacter junii SH205]
          Length = 420

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 29  YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82
           Y PI T +  L  +G    L  E   +     +R +GF  +    ++   + L     + 
Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPHLDL----DID 312

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +++  +       +    +   + ++I ++PGI +K A +I+
Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYRMILRVPGIGVKSAKKIV 352


>gi|225175287|ref|ZP_03729282.1| helicase, RecD/TraA family [Dethiobacter alkaliphilus AHT 1]
 gi|225169039|gb|EEG77838.1| helicase, RecD/TraA family [Dethiobacter alkaliphilus AHT 1]
          Length = 724

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R     L    GVG   A  ++       L   II  +   + ++ GI +K A+ I
Sbjct: 81  ERFLASGLIK--GVGPSTAEKIVEHFGVDALE--IIENDPGRLCEVEGIGVKKAATI 133


>gi|257084525|ref|ZP_05578886.1| competence protein CelA [Enterococcus faecalis Fly1]
 gi|256992555|gb|EEU79857.1| competence protein CelA [Enterococcus faecalis Fly1]
          Length = 225

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|162139923|ref|YP_340422.2| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis TAC125]
 gi|119367818|sp|Q3IIM0|UVRC_PSEHT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 607

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 47  LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99
           L +  H+R +  R   F           ++   LL+ + GVGA+    +L  +     + 
Sbjct: 522 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEINGVGAKRRQTLLKYLGGMQGVK 578

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
            +    N + + ++PGIS  +A +I   L  K
Sbjct: 579 AA----NIEQLKKVPGISPDMADKIFNHLHDK 606


>gi|256853809|ref|ZP_05559174.1| competence protein comEA [Enterococcus faecalis T8]
 gi|307290497|ref|ZP_07570410.1| comEA protein [Enterococcus faecalis TX0411]
 gi|256710752|gb|EEU25795.1| competence protein comEA [Enterococcus faecalis T8]
 gi|306498444|gb|EFM67948.1| comEA protein [Enterococcus faecalis TX0411]
          Length = 225

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217


>gi|269792732|ref|YP_003317636.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100367|gb|ACZ19354.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 235

 Score = 40.8 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             L+S+ GVG + A  ++   TA          + K + ++ GI  K   ++
Sbjct: 181 EELKSLPGVGDKTAQAIIDYRTANGPFR-----DVKDLMKVKGIGPKKLEKM 227


>gi|146282443|ref|YP_001172596.1| excinuclease ABC subunit C [Pseudomonas stutzeri A1501]
 gi|145570648|gb|ABP79754.1| excinuclease ABC subunit C [Pseudomonas stutzeri A1501]
          Length = 585

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V G+G +    +L+      EL  + + +    IA+ PGIS K+A  I
Sbjct: 531 TLEDVPGIGPKRRRELLTHFGGLQELCRASLDE----IAKAPGISKKLAESI 578


>gi|32476472|ref|NP_869466.1| DNA processing chain A [Rhodopirellula baltica SH 1]
 gi|32447017|emb|CAD78923.1| DNA processing chain A [Rhodopirellula baltica SH 1]
          Length = 455

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
             D  R   + L  + G+G R    ++    +     +I+  +   +A + G+  K+A
Sbjct: 85  ADDSTRDL-VQLCLLPGLGPRTLTSLMEAFGS---ARAILNADKNSLASVHGVGPKLA 138


>gi|288917081|ref|ZP_06411451.1| excinuclease ABC, C subunit [Frankia sp. EUN1f]
 gi|288351450|gb|EFC85657.1| excinuclease ABC, C subunit [Frankia sp. EUN1f]
          Length = 758

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
           L  V G+G      +L +  +  ++  +   +    IAQ+PGI  + A  I+  L   A 
Sbjct: 641 LDGVPGLGDTRRKALLRQFGSVAKVRAATAEE----IAQVPGIGPRTAEAIVAALARSAP 696

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
             +      ++ +  E     +  +    A+S
Sbjct: 697 GEAQAPPPAVNPLTGEIIGTGTTGTETTGAMS 728


>gi|257416686|ref|ZP_05593680.1| competence protein comEA [Enterococcus faecalis AR01/DG]
 gi|257158514|gb|EEU88474.1| competence protein comEA [Enterococcus faecalis ARO1/DG]
          Length = 211

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203


>gi|226953824|ref|ZP_03824288.1| radical SAM superfamily protein [Acinetobacter sp. ATCC 27244]
 gi|226835415|gb|EEH67798.1| radical SAM superfamily protein [Acinetobacter sp. ATCC 27244]
          Length = 420

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 29  YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82
           Y PI T +  L  +G    L  E   +     +R +GF  +    ++   + L     V 
Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPHLDL----DVD 312

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +++  +       +    +   + ++I ++PGI +K A +I+
Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYRMILRVPGIGVKSAKKIV 352


>gi|76875758|emb|CAI86979.1| DNA repair enzyme together with UvrAB; incision nuclease subunit C;
           repair of UV damage to DNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 586

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 47  LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99
           L +  H+R +  R   F           ++   LL+ + GVGA+    +L  +     + 
Sbjct: 501 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEINGVGAKRRQTLLKYLGGMQGVK 557

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
            +    N + + ++PGIS  +A +I   L  K
Sbjct: 558 AA----NIEQLKKVPGISPDMADKIFNHLHDK 585


>gi|88800815|ref|ZP_01116371.1| hypothetical protein MED297_06529 [Reinekea sp. MED297]
 gi|88776455|gb|EAR07674.1| hypothetical protein MED297_06529 [Reinekea sp. MED297]
          Length = 2587

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 106 NSKVIAQIPGISMKIASRIM 125
           + K +  + GI  K A RI+
Sbjct: 11  DKKSLQSVKGIGEKTAERII 30


>gi|313113909|ref|ZP_07799467.1| helicase, RecD/TraA family [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623748|gb|EFQ07145.1| helicase, RecD/TraA family [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 740

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 23/143 (16%)

Query: 3   GKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQDQI 58
            +I+G +E      ++ +     Y+++            G    L     +    R +  
Sbjct: 7   EQIEGTVED-----IIYENTDNGYMVFEVSGGGVVTVVCGIVGELHAGESVVCRGRYENH 61

Query: 59  RLFG--FLSDL-DRQW---------FMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106
             +G  F +   +            F+  +S+  +GA+ A  ++    A  L   +I  +
Sbjct: 62  ATYGRQFHAQECETDMPKDLEAVYAFLASRSLPYIGAKTADKIIDLFGAEALE--VIAND 119

Query: 107 SKVIAQIPGISMKIASRIMTELK 129
              + Q+PGIS   A RI  E K
Sbjct: 120 PARLTQVPGISADKADRIQQEFK 142


>gi|308177476|ref|YP_003916882.1| DNA uptake protein [Arthrobacter arilaitensis Re117]
 gi|307744939|emb|CBT75911.1| putative DNA uptake protein [Arthrobacter arilaitensis Re117]
          Length = 215

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDM 143
           I   +S+ + ++PGI   +A RI+ + + K    +SV + D 
Sbjct: 157 INNADSQTLQELPGIGPALAERII-DFRSKNGPFTSVEELDA 197


>gi|262376249|ref|ZP_06069479.1| DNA-binding protein [Acinetobacter lwoffii SH145]
 gi|262308850|gb|EEY89983.1| DNA-binding protein [Acinetobacter lwoffii SH145]
          Length = 419

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 25/109 (22%)

Query: 29  YCPIRTLS-CLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---------DRQWFMLLQ 76
           Y PI      L  IG    L  E   +     +R +GF +D          + +      
Sbjct: 256 YIPINPEEKALPAIGSAPPLLRENRLYQSDWLMRFYGFAADEIVDEQHPNLELE------ 309

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
               +  +++  +            I   + K+I ++PGI ++ A +I+
Sbjct: 310 ----IDPKLSWALRH---PEAFPVDINRADYKMILRVPGIGVRSAQKIV 351


>gi|257090638|ref|ZP_05584999.1| competence protein comEA [Enterococcus faecalis CH188]
 gi|256999450|gb|EEU85970.1| competence protein comEA [Enterococcus faecalis CH188]
          Length = 211

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203


>gi|149195333|ref|ZP_01872420.1| DNA polymerase X family/PHP domain protein [Caminibacter
           mediatlanticus TB-2]
 gi|149134525|gb|EDM23014.1| DNA polymerase X family/PHP domain protein [Caminibacter
           mediatlanticus TB-2]
          Length = 567

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 21/105 (20%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQGVGARVAMG 88
           L+ L  IG   +LF++  +   +     F    + Q         +L S++G+G +    
Sbjct: 55  LTRLPGIGKDLSLFIKEIVETGK-----FHKLEELQKEIPPGLVDML-SIEGLGPKRIRQ 108

Query: 89  VLSRITA---TELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           +          EL +         + ++PG   K+  +I   LKG
Sbjct: 109 IYDAFKVTSLDELKKYAESGE---LDKLPGFGPKLIEKI---LKG 147


>gi|255975151|ref|ZP_05425737.1| competence protein comEA [Enterococcus faecalis T2]
 gi|255968023|gb|EET98645.1| competence protein comEA [Enterococcus faecalis T2]
          Length = 211

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203


>gi|327398818|ref|YP_004339687.1| exodeoxyribonuclease V subunit alpha [Hippea maritima DSM 10411]
 gi|327181447|gb|AEA33628.1| exodeoxyribonuclease V, alpha subunit [Hippea maritima DSM 10411]
          Length = 628

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 71  WFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS-MKIASRIMTE 127
            F  L   V+G+G ++A  +++     +L   I+      + +  GI   K+A   + E
Sbjct: 150 LFFFLTKIVKGIGEKLARELINHYGEQQL-TYILDNEPDTLTEFKGIKEKKLAK--ILE 205


>gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 579

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             +  + GVG + A+ +   L   +  EL ++    ++  +  +PG+  K    I
Sbjct: 92  REVTQIPGVGPKTAVLLYRKLGIKSVDELRKAA---DAGKLKGLPGLGEKTVENI 143


>gi|312373598|gb|EFR21309.1| hypothetical protein AND_17225 [Anopheles darlingi]
          Length = 1682

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 121  ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            A R+  EL  K    S ++   +  +   +A +         A++AL  L Y ++ A  A
Sbjct: 1366 ADRLAEELTSKIDGNSKLLNNVVENIQLAEALLSRAEIQKEEAVTALKQLQYAKELAEKA 1425

Query: 181  VVS 183
            V  
Sbjct: 1426 VAE 1428


>gi|327539302|gb|EGF25923.1| DNA recombination-mediator protein A [Rhodopirellula baltica WH47]
          Length = 424

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
             D  R   + L  + G+G R    ++    +     +I+  +   +A + G+  K+A
Sbjct: 54  ADDSTRDL-VQLCLLPGLGPRTLTSLMEAFGS---ARAILNADKNSLASVHGVGPKLA 107


>gi|329117180|ref|ZP_08245897.1| helicase, RecD/TraA family [Streptococcus parauberis NCFD 2020]
 gi|326907585|gb|EGE54499.1| helicase, RecD/TraA family [Streptococcus parauberis NCFD 2020]
          Length = 800

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 17/102 (16%)

Query: 113 IPGISMKIASRIMTELK-----GKAISLSSVVQQ--DMSCVNKEQ-AHICSMPSFAINAI 164
             GI  K A RI+  L       K +   S ++     S  N+E       +       I
Sbjct: 95  FKGIGKKTAERIV-SLYGDNTIDKILDDPSKLEDINGFSKANREAFVAKLRINYGTEQII 153

Query: 165 SALVNLGYGQDQA--------TTAVVSVLKKEKNIADDSQII 198
           +ALV LG     A          AV  V      + +D Q I
Sbjct: 154 AALVELGLSNRMAFQIYDQYKEEAVERVRTNPYQLVEDIQGI 195


>gi|56750195|ref|YP_170896.1| recombination protein RecR [Synechococcus elongatus PCC 6301]
 gi|73621523|sp|Q5N5P2|RECR_SYNP6 RecName: Full=Recombination protein recR
 gi|172046613|sp|Q31NH0|RECR_SYNE7 RecName: Full=Recombination protein recR
 gi|56685154|dbj|BAD78376.1| recombination protein RecR [Synechococcus elongatus PCC 6301]
          Length = 199

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + + ++PG+  K A R+   L
Sbjct: 12  IEHLQKLPGVGPKTAQRLALHL 33


>gi|104773874|ref|YP_618854.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103422955|emb|CAI97625.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSSHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|189499391|ref|YP_001958861.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
 gi|189494832|gb|ACE03380.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
          Length = 382

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           ++L  V G+G      +  +   +    +I   + + +A IPGI  K+A R +T+
Sbjct: 17  LVLSRVPGLGPARIRALKRQFGTS---NAIFHADERALAVIPGIGRKLA-RTITD 67


>gi|160934042|ref|ZP_02081429.1| hypothetical protein CLOLEP_02904 [Clostridium leptum DSM 753]
 gi|156866715|gb|EDO60087.1| hypothetical protein CLOLEP_02904 [Clostridium leptum DSM 753]
          Length = 453

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 20/112 (17%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGF-----LSDLDRQWFMLLQ 76
           V Y  Y P+   + L  IG    L  E  + Q    L  +GF     L +  + +   L 
Sbjct: 264 VFYSAYLPVNESALLPPIGTKPPLLREHRLYQADWLLRFYGFKAKELLDEQHQSFHPYLD 323

Query: 77  SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
                  +   A+  L           +   + + + ++PGI +K A +I+T
Sbjct: 324 ------PKCNWALNHLDLFPVE-----VNKASYETLLRVPGIGVKGAKKIIT 364


>gi|188579294|ref|YP_001922739.1| helicase, RecD/TraA family [Methylobacterium populi BJ001]
 gi|179342792|gb|ACB78204.1| helicase, RecD/TraA family [Methylobacterium populi BJ001]
          Length = 727

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G+G  +A  +++     E V  II      + ++ GI  K A+RI+
Sbjct: 101 GIGPMMAKRIVAAFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 144


>gi|326792133|ref|YP_004309954.1| elongator protein 3/MiaB/NifB [Clostridium lentocellum DSM 5427]
 gi|326542897|gb|ADZ84756.1| elongator protein 3/MiaB/NifB [Clostridium lentocellum DSM 5427]
          Length = 458

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 17/109 (15%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIRLFGFLSDLDRQ----WFMLLQSV 78
           V Y  Y P+     L ++    TL      + D  +RL+GF +          F      
Sbjct: 250 VYYSAYTPVNKGKNLPELTQPPTLREHRLYQGDWLLRLYGFKATELLDEAHPQFDTHLD- 308

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                +   A+  L +         I     +++ ++PGI ++ A +IM
Sbjct: 309 ----PKTSWALNHLEQFPVE-----INSAPYQMLLRVPGIGIRGAQKIM 348


>gi|104774519|ref|YP_619499.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423600|emb|CAI98533.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LEAKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKENSAHVRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|104774575|ref|YP_619555.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|104774764|ref|YP_619744.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423656|emb|CAI98617.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423845|emb|CAI98877.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LEAKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|11499053|ref|NP_070287.1| Hef nuclease [Archaeoglobus fulgidus DSM 4304]
 gi|2649107|gb|AAB89786.1| ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus DSM
           4304]
          Length = 741

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 66  DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             ++++  ++ ++  VG  +A  +L      + +E+I   + + +A++P +  KIA RI
Sbjct: 669 KDEQEY--IVSAISNVGNVIARNLLDYF---QTIENIATADEEELAKVPKVGKKIAKRI 722


>gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
 gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
          Length = 703

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 25/181 (13%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD------------ 66
           +D+ G+ Y        L   G+I D   +F      +    L GF               
Sbjct: 467 LDIDGLGYE---TATVLLAEGRIHDIGDVF--HLAPESFEGLRGFADKKIEQILRGLEAA 521

Query: 67  LDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            DR  + LL   S++ VG   A G+   + + +   +I    ++ +A + G+  KIA  +
Sbjct: 522 RDRPLWRLLVGLSIRHVGPTAARGLARELRSLD---AIATAPAERLAAVDGVGPKIADAV 578

Query: 125 MTELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATTAVV 182
           +      +   + + +      +  E A     P   +  +     L G+ +D AT AV 
Sbjct: 579 VDWFADPRHRDIVARIASGGVRLADEGAGEGPGPLDGVVVVIT-GTLDGWSRDTATEAVQ 637

Query: 183 S 183
           S
Sbjct: 638 S 638


>gi|259046679|ref|ZP_05737080.1| exodeoxyribonuclease V alpha chain [Granulicatella adiacens ATCC
           49175]
 gi|259036844|gb|EEW38099.1| exodeoxyribonuclease V alpha chain [Granulicatella adiacens ATCC
           49175]
          Length = 800

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 13/96 (13%)

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA------ 166
            PGI  K A +I+ +L   A+     +  D + ++                I+       
Sbjct: 98  FPGIGEKTAEKIVEKLGEDALE---RILNDGNALDGITGLTKKKKEMIREVITQNQGTEK 154

Query: 167 ----LVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
               L NLG+    A   +     K K I D+   +
Sbjct: 155 LMFELTNLGFTPSIAQKIIGMFKDKAKQILDEDPYL 190


>gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6]
          Length = 746

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 69  RQWFMLLQS-VQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++    + S +  +G  +A  +L    T   +  +   +    + ++P I  K A +I
Sbjct: 677 KEMQEYVVSAISDIGPVIARNLLEHFQTIERIATASEEE----LMKVPKIGKKTAEKI 730


>gi|325294733|ref|YP_004281247.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065181|gb|ADY73188.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 574

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 75  LQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  + GVG +    +   +   +  +L  +I       + ++PG  +K   +I
Sbjct: 93  LLDIPGVGPKTVKLLYETLGIRSVEDLKRAIEKGE---LLKLPGFGLKKVEKI 142


>gi|323467391|gb|ADX71078.1| Transposase, IS116/IS110/IS902 family [Lactobacillus helveticus
           H10]
          Length = 315

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 38/99 (38%)

Query: 70  QWFMLLQSVQGVGARVAMGV----------------LSRITATELVESIIL--------- 104
           Q    L  ++G+GA  A  V                   IT   +   I           
Sbjct: 104 QIASQLVKIKGIGASKANQVACSLQSLAQRTWYYDDCDSITVELIKYCIEHLLQIEQRRK 163

Query: 105 -------------QNSKVIAQIPGISMKIASRIMTELKG 130
                        ++ ++   +PGI  K A RI  EL  
Sbjct: 164 HILAYIKQIAPNPKDVQIYLSVPGIGKKTALRIYAELGD 202


>gi|323466829|gb|ADX70516.1| Transposase, IS116/IS110/IS902 family [Lactobacillus helveticus
           H10]
          Length = 404

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 38/99 (38%)

Query: 70  QWFMLLQSVQGVGARVAMGV----------------LSRITATELVESIIL--------- 104
           Q    L  ++G+GA  A  V                   IT   +   I           
Sbjct: 193 QIASQLVKIKGIGASKANQVACSLQSLAQRTWYYDDCDSITVELIKYCIEHLLQIEQRRK 252

Query: 105 -------------QNSKVIAQIPGISMKIASRIMTELKG 130
                        ++ ++   +PGI  K A RI  EL  
Sbjct: 253 HILAYIKQIAPNPKDVQIYLSVPGIGKKTALRIYAELGD 291


>gi|323465869|gb|ADX69556.1| Transposase, IS116/IS110/IS902 family [Lactobacillus helveticus
           H10]
          Length = 255

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 38/99 (38%)

Query: 70  QWFMLLQSVQGVGARVAMGV----------------LSRITATELVESIIL--------- 104
           Q    L  ++G+GA  A  V                   IT   +   I           
Sbjct: 44  QIASQLVKIKGIGASKANQVACSLQSLAQRTWYYDDCDSITVELIKYCIEHLLQIEQRRK 103

Query: 105 -------------QNSKVIAQIPGISMKIASRIMTELKG 130
                        ++ ++   +PGI  K A RI  EL  
Sbjct: 104 HILAYIKQIAPNPKDVQIYLSVPGIGKKTALRIYAELGD 142


>gi|90578923|ref|ZP_01234733.1| excinuclease ABC subunit C [Vibrio angustum S14]
 gi|90439756|gb|EAS64937.1| excinuclease ABC subunit C [Vibrio angustum S14]
          Length = 589

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L+ V+G+G +    +L  +    EL ++   +    IA++PGIS  +A +I+
Sbjct: 536 LEDVEGIGPKRRQALLKYMGGMQELKKASKEE----IAKVPGISPALAEKIV 583


>gi|304313820|ref|YP_003848967.1| DNA-binding protein [Methanothermobacter marburgensis str. Marburg]
 gi|302587279|gb|ADL57654.1| predicted DNA-binding protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 368

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 19/78 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG------VGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +GF  D             G      V  + A  +   I   +L  +   +    I ++P
Sbjct: 267 YGFGVDE--------LRFSGGYLDTSVDPKYAAAMEMDIFPVDLKTAPYHE----IIRVP 314

Query: 115 GISMKIASRIMTELKGKA 132
           GI  + A +I+ EL+GK 
Sbjct: 315 GIGPRSARKII-ELRGKV 331


>gi|290969084|ref|ZP_06560617.1| helicase, RecD/TraA family [Megasphaera genomosp. type_1 str. 28L]
 gi|290780881|gb|EFD93476.1| helicase, RecD/TraA family [Megasphaera genomosp. type_1 str. 28L]
          Length = 721

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 73  MLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS-MKIAS 122
             L S  V G+G  +A  ++       +   I+  +   + QI GI   K+A 
Sbjct: 86  RFLSSGEVTGIGPELAKRMVDAFDLQTMD--IVQNDPDKLLQIQGIGIKKVAQ 136


>gi|116514670|ref|YP_813576.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093985|gb|ABJ59138.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125568|gb|ADY84898.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|15146027|gb|AAK83659.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 386

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 166 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 225

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 226 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 269


>gi|148265405|ref|YP_001232111.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146398905|gb|ABQ27538.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 428

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 24/158 (15%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR--QWFMLLQSVQG 80
           V Y  + P+ + + L  +     L     +     +R +GF S  +   +    L   Q 
Sbjct: 253 VYYSAFIPVASDNRLPALAGPPLLREHRLYQADWLLRFYGF-SAHELLDECRPNLD--QR 309

Query: 81  VGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM----------TEL 128
              +   AM  L           +   + +V+ ++PGI ++ A RI+           EL
Sbjct: 310 FDPKTCWAMRHLHLFPVE-----VNRADYEVLLRVPGIGVRSAQRIVQARRHTRLGEAEL 364

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
           K +   +    +  ++   +  A      +     + A
Sbjct: 365 K-RLGVVLKRARWFLTAGGRSLAGKTLDEARLAEVLLA 401


>gi|116514655|ref|YP_813561.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093970|gb|ABJ59123.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|325125878|gb|ADY85208.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|320352580|ref|YP_004193919.1| Excinuclease ABC subunit C [Desulfobulbus propionicus DSM 2032]
 gi|320121082|gb|ADW16628.1| Excinuclease ABC subunit C [Desulfobulbus propionicus DSM 2032]
          Length = 620

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 11/103 (10%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG--FLSDLDR---QWFMLLQSVQGV 81
            ++ P R    L        L++   +R +  R FG  F   L R   Q    L ++ G+
Sbjct: 512 KLFRPGRKNPVLLPAHSPVLLYL-MRIRDEAHR-FGITFHRRL-RGKAQLRSQLDAIDGI 568

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           G +    +L  + +   V  I     + +A++PGI  ++A +I
Sbjct: 569 GPKRKQMLLHTLGS---VRRIAEAGIEELAEVPGIGPELAKQI 608


>gi|116514784|ref|YP_813690.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116094099|gb|ABJ59252.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|22299747|ref|NP_682994.1| recombination protein RecR [Thermosynechococcus elongatus BP-1]
 gi|34222856|sp|Q8DGV8|RECR_THEEB RecName: Full=Recombination protein recR
 gi|22295931|dbj|BAC09756.1| recombination protein [Thermosynechococcus elongatus BP-1]
          Length = 202

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + + ++PGI  K A R+   L
Sbjct: 13  IEQLQRLPGIGPKTAQRLALHL 34


>gi|313123020|ref|YP_004033279.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279583|gb|ADQ60302.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 424

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 204 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 263

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  +S + +        + +++  IPGI    A RI++EL  
Sbjct: 264 AEEECQSALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 307


>gi|254558662|ref|YP_003065757.1| Helicase [Methylobacterium extorquens DM4]
 gi|254265940|emb|CAX21689.1| Helicase [Methylobacterium extorquens DM4]
          Length = 733

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G+G  +A  +++R    E V  II      + ++ GI  K A+RI+
Sbjct: 107 GIGPMMAKRIVARFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 150


>gi|163849466|ref|YP_001637509.1| RecD/TraA family helicase [Methylobacterium extorquens PA1]
 gi|163661071|gb|ABY28438.1| helicase, RecD/TraA family [Methylobacterium extorquens PA1]
          Length = 733

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G+G  +A  +++     E V  II      + ++ GI  K A+RI+
Sbjct: 107 GIGPMMAKRIVACFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 150


>gi|325125890|gb|ADY85220.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|119478435|ref|ZP_01618420.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143]
 gi|119448521|gb|EAW29768.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143]
          Length = 625

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL--------SDLDRQWFMLLQ 76
            + +     T        D   L +  H+R +  R   F             R+    L+
Sbjct: 519 GFEVLFRADTREEFVMPSDSAGLHLVQHIRDESHR---FAITGHKQRRDKKRRE--SPLE 573

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
            + GVG +    +L      + V++    +   +A IPGIS K+A  I+  L
Sbjct: 574 GIPGVGPKRRRELLRHFGGWQEVKAASADD---LANIPGISDKLARDIVAAL 622


>gi|313123634|ref|YP_004033893.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280197|gb|ADQ60916.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 424

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 204 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 263

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  +S + +        + +++  IPGI    A RI++EL  
Sbjct: 264 AEEECQSALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 307


>gi|325125985|gb|ADY85315.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|238063673|ref|ZP_04608382.1| helicase [Micromonospora sp. ATCC 39149]
 gi|237885484|gb|EEP74312.1| helicase [Micromonospora sp. ATCC 39149]
          Length = 754

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK-IA 121
           +R     L    G+G ++A  +++      L   II + S  + ++ G+  K  A
Sbjct: 104 ERYLGSGLIK--GIGPKMAARIVAAFGVDTLR--IIEEESARLVEVHGLGRKRTA 154


>gi|104774318|ref|YP_619298.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423399|emb|CAI98266.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|104774617|ref|YP_619597.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423698|emb|CAI98672.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|330446241|ref|ZP_08309893.1| excinuclease ABC, C subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490432|dbj|GAA04390.1| excinuclease ABC, C subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 589

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L+ V+G+G +    +L  +    EL ++   +    IA++PGIS  +A +I+
Sbjct: 536 LEDVEGIGPKRRQALLKYMGGMQELKKASKEE----IAKVPGISPALAEKIV 583


>gi|149197777|ref|ZP_01874826.1| recombination protein RecR [Lentisphaera araneosa HTCC2155]
 gi|149138998|gb|EDM27402.1| recombination protein RecR [Lentisphaera araneosa HTCC2155]
          Length = 200

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 5/34 (14%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
             +  ++I       IA +PGI  K A ++   L
Sbjct: 5   PEQFQQAIE-----TIASLPGIGKKGAEKLALAL 33


>gi|21673094|ref|NP_661159.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
           tepidum TLS]
 gi|21646166|gb|AAM71501.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
           tepidum TLS]
          Length = 399

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS----MKIASRI 124
             +++  + G+G   A  +L+R  AT    +++  +   + QIPGI      + A R+
Sbjct: 31  LLLIVSQLPGIGPSRARALLNRFGAT---PALLEADYDALRQIPGIGETTARETAERL 85


>gi|46199538|ref|YP_005205.1| recombination protein recR [Thermus thermophilus HB27]
 gi|73621525|sp|Q72I96|RECR_THET2 RecName: Full=Recombination protein recR
 gi|46197164|gb|AAS81578.1| recombination protein recR [Thermus thermophilus HB27]
          Length = 194

 Score = 40.0 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
           ++ ++++PGI  K A R+   L
Sbjct: 11  TRALSRLPGIGPKTAQRLALHL 32


>gi|210609710|ref|ZP_03288096.1| hypothetical protein CLONEX_00280 [Clostridium nexile DSM 1787]
 gi|210152796|gb|EEA83802.1| hypothetical protein CLONEX_00280 [Clostridium nexile DSM 1787]
          Length = 446

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 24  VCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIRL--FGFLSDL---DRQW-FMLLQ 76
           V Y  +  +     L  + GD   L  E  + Q    L  +GF +     ++   F +L 
Sbjct: 256 VFYSAFIHVNEDEHLPARTGDGPPLLREHRLYQADWLLRYYGFEAKELLSEKNPNFNVL- 314

Query: 77  SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
               V  +   A+  L           +   +  ++ ++PGI  K A RI+
Sbjct: 315 ----VDPKCNWALEHLECFPVE-----VNRADYHMLLRVPGIGYKSAGRIV 356


>gi|70730923|ref|YP_260664.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf-5]
 gi|92058694|sp|Q4KAR9|UVRC_PSEF5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|68345222|gb|AAY92828.1| UvrABC system, C protein [Pseudomonas fluorescens Pf-5]
          Length = 607

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG +    +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPKRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAELI 600


>gi|55981569|ref|YP_144866.1| recombination protein RecR [Thermus thermophilus HB8]
 gi|73621526|sp|Q5SHY0|RECR_THET8 RecName: Full=Recombination protein recR
 gi|55772982|dbj|BAD71423.1| RecR protein [Thermus thermophilus HB8]
          Length = 194

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
           ++ ++++PGI  K A R+   L
Sbjct: 11  TRALSRLPGIGPKTAQRLALHL 32


>gi|300776156|ref|ZP_07086015.1| radical SAM domain protein [Chryseobacterium gleum ATCC 35910]
 gi|300505289|gb|EFK36428.1| radical SAM domain protein [Chryseobacterium gleum ATCC 35910]
          Length = 419

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDLDRQW-----FMLLQ 76
           V Y  Y P+     L  +     +  E   +     +R +GF    +        F+ L+
Sbjct: 253 VYYSGYVPVLEDQRLPSLTTEVPMLRENRLYQSDWLMRFYGF--KAEEILDPNVPFLDLE 310

Query: 77  SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
               +  ++  A+  L +         +     + I ++PGI +K A +I+
Sbjct: 311 ----MDPKLSWALRNLDQFPVN-----LQTAEYRTILRVPGIGVKTAQKII 352


>gi|315126224|ref|YP_004068227.1| excinuclease ABC subunit C [Pseudoalteromonas sp. SM9913]
 gi|315014738|gb|ADT68076.1| excinuclease ABC subunit C [Pseudoalteromonas sp. SM9913]
          Length = 607

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 47  LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99
           L +  H+R +  R   F           ++   LL+ + GVG++    +L  +     + 
Sbjct: 522 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEIDGVGSKRRQTLLKYLGGMQGVK 578

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
            +    N + + ++PGIS  +A +I   L  K
Sbjct: 579 AA----NIEQLKKVPGISPDMAEKIFNHLHDK 606


>gi|110669544|ref|YP_659355.1| excinuclease ABC subunit C [Haloquadratum walsbyi DSM 16790]
 gi|119367657|sp|Q18E52|UVRC_HALWD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|109627291|emb|CAJ53781.1| excinuclease ABC chain C [Haloquadratum walsbyi DSM 16790]
          Length = 585

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 25/122 (20%)

Query: 8   NIEGLYEDYVLIDVQGV-CYIIYCPIRTLSCLGKIGDFCTLFV---ETHMRQDQIRLFGF 63
            I     D +++   GV  +    P   L  L ++ D    F       +R D       
Sbjct: 480 TIALAKADELVVTPNGVHDWDADAPQ--LHLLQRVRDEAHRFAVQYHQSIRDDIHT---- 533

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
                     +L  V GVG +    +L R  +   +  +   ++   +  +PG+  + A 
Sbjct: 534 ----------VLSDVPGVGEQTQQALLRRFGSVENVRSA--SRD--ALCDVPGVGKQTAD 579

Query: 123 RI 124
            I
Sbjct: 580 TI 581


>gi|322368178|ref|ZP_08042747.1| DNA mismatch repair protein MutS domain protein [Haladaptatus
           paucihalophilus DX253]
 gi|320552194|gb|EFW93839.1| DNA mismatch repair protein MutS domain protein [Haladaptatus
           paucihalophilus DX253]
          Length = 657

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           L++V GVGA+ A  +     A     ++   +   +A+ PGI
Sbjct: 3   LEAVPGVGAKTADALAELDDAE---RALETGDVATLARAPGI 41


>gi|240136791|ref|YP_002961258.1| Helicase [Methylobacterium extorquens AM1]
 gi|240006755|gb|ACS37981.1| Helicase [Methylobacterium extorquens AM1]
          Length = 733

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G+G  +A  +++R    E V  II      + ++ GI  K A+RI+
Sbjct: 107 GIGPMMAKRIVARFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 150


>gi|104774644|ref|YP_619624.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423725|emb|CAI98717.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDIAQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|218528092|ref|YP_002418908.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4]
 gi|218520395|gb|ACK80980.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4]
          Length = 733

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G+G  +A  +++R    E V  II      + ++ GI  K A+RI+
Sbjct: 107 GIGPMMAKRIVARFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 150


>gi|104773896|ref|YP_618876.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103422977|emb|CAI97657.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|320159933|ref|YP_004173157.1| uvrABC system protein C [Anaerolinea thermophila UNI-1]
 gi|319993786|dbj|BAJ62557.1| uvrABC system protein C [Anaerolinea thermophila UNI-1]
          Length = 620

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQG 80
            ++ P R+ S L        L++   +R +  R   F     R+         +L S+ G
Sbjct: 519 ELFLPERSESILLPRHSQG-LYLLQRIRDEAHR---FAITAHRKQRTKQGMASVLDSIPG 574

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +G      +L    + E   +I   + + +   PGI+ ++A +I
Sbjct: 575 IGPARRRWLLQHFGSLE---AIRQASLEELTAAPGITKELAQKI 615


>gi|297190382|ref|ZP_06907780.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720406|gb|EDY64314.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 575

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 38/130 (29%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI--------- 120
             L  + G+G R AM +   L   +  +L+++I  +    +  + G   +          
Sbjct: 92  RELIMIPGLGPRKAMVLYEELEVASVDQLLDAIHKE---RLRDLKGFGERTESNLLHGIS 148

Query: 121 ------------------ASRIMTELKG-----KAISLSSVVQQDMSCVNKEQAHICSMP 157
                             A +++ EL       +     S+ +   +  + +        
Sbjct: 149 VLQKAGEGRILVSAAMDVAEQLVAELSDIRGCVRCSYAGSLRRMKETIGDVDILVAARRS 208

Query: 158 SFAINAISAL 167
           +  ++A++AL
Sbjct: 209 APFMDALTAL 218


>gi|254443389|ref|ZP_05056865.1| PHP domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257697|gb|EDY82005.1| PHP domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 585

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 6/55 (10%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           +  + G+GA+    +   L   +   L  +    +   +    G   K   +I+ 
Sbjct: 93  MLEIPGLGAKKIKAMHKELGVDSIDALKAACERGDVAGL---KGFGKKTEEKILL 144


>gi|304315583|ref|YP_003850728.1| recombination protein RecR [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777085|gb|ADL67644.1| recombination protein RecR [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 199

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 4/34 (11%)

Query: 110 IAQIPGISMKIASRI---MTEL-KGKAISLSSVV 139
           ++++PGI  K A R+   + ++ K   I+LS+ +
Sbjct: 15  LSRLPGIGRKTAQRLAFYILDMPKDDVINLSNAI 48


>gi|309388782|gb|ADO76662.1| radical SAM domain protein [Halanaerobium praevalens DSM 2228]
          Length = 424

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 17/109 (15%)

Query: 24  VCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIRLFGFLSDL----DRQWFMLLQSV 78
           V Y  Y P+   S L  + G         +     +R +GF +      DR+ F L    
Sbjct: 250 VYYSAYLPVNKSSLLPTLTGPPLKREHRLYQADWLLRFYGFKAGELLTPDRENFDLKID- 308

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                +   A+  L +         +   + +++ ++PGI  + A++I+
Sbjct: 309 ----PKADWAINNLDQFPIE-----VNQASYQMLLRVPGIGPRSAAKIV 348


>gi|15791082|ref|NP_280906.1| hypothetical protein VNG2270G [Halobacterium sp. NRC-1]
 gi|169236833|ref|YP_001690033.1| DNA mismatch repair protein mutS-like protein [Halobacterium
           salinarum R1]
 gi|10581681|gb|AAG20386.1| mismatch repair protein [Halobacterium sp. NRC-1]
 gi|167727899|emb|CAP14687.1| DNA mismatch repair protein mutS homolog [Halobacterium salinarum
           R1]
          Length = 669

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           LQ++ GVGA+ A  + S         ++   +   +A  PG+S   A+RI+
Sbjct: 3   LQAIPGVGAKTADALGSLDDPEG---ALERGDVAAVAGAPGVSEGRAARIV 50


>gi|1174921|sp|P32966|UVRC_PSEFL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|472402|gb|AAA98758.1| UVR excinuclease subunit C [Pseudomonas fluorescens]
          Length = 607

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG +    +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEDVAGVGPKRRRDLLKHFGGLQELSRASIEE----IAKAPGISKKLAELI 600


>gi|332975385|gb|EGK12279.1| exodeoxyribonuclease V alpha subunit [Desmospora sp. 8437]
          Length = 753

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 15/103 (14%)

Query: 107 SKVIAQ--IPGISMKIASRIMTELKGKAISLSSVVQQDM---SCVNKEQAHICSMPSFAI 161
           +K ++    PG+  K A +I+  L    ++ ++V    +     + + +A+  +      
Sbjct: 99  AKYLSSGLFPGVGKKTAEKIVDFLGPGVLAQAAVDPGILRRVPGITESRANTIAEGLKEH 158

Query: 162 NAIS-ALVNL---GYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
            A+  ALV L   G G   A   V +  +         +IIR 
Sbjct: 159 QALEQALVQLYQFGLGPAIALRVVQTYKEA------TLEIIRQ 195


>gi|325125914|gb|ADY85244.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 407

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|86134136|ref|ZP_01052718.1| radical SAM superfamily protein [Polaribacter sp. MED152]
 gi|85820999|gb|EAQ42146.1| radical SAM superfamily protein [Polaribacter sp. MED152]
          Length = 420

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 24/132 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL-------DRQWFML 74
           V Y  Y PI     L  IG    +  E   +      R +GF ++               
Sbjct: 253 VYYSGYVPISYDDRLPSIGSKVPMLRENRLYQSDWLTRFYGFQTNEIVNQNHQQLDL--- 309

Query: 75  LQSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
                 +  ++  A+  L           +   + +++A+IPG+ MK  S+I+   K + 
Sbjct: 310 -----DIDPKLSWALRNLHEFPVD-----VNKADKRMLARIPGVGMKSVSKILMARKYRR 359

Query: 133 ISLSSVVQQDMS 144
           ++   + +  ++
Sbjct: 360 LNWDHLKKIGIA 371


>gi|319790038|ref|YP_004151671.1| PHP domain protein [Thermovibrio ammonificans HB-1]
 gi|317114540|gb|ADU97030.1| PHP domain protein [Thermovibrio ammonificans HB-1]
          Length = 575

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 18/99 (18%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR------QWFMLLQSVQGVGARVAMG 88
           LS L  IG      +   +R       G + + ++           L  + GVG +    
Sbjct: 53  LSQLPGIGQRLQAKILEFLRT------GKIEEFEKLKQQVPDTIFTLLDIPGVGPKTVKL 106

Query: 89  VLSRI---TATELVESIILQNSKVIAQIPGISMKIASRI 124
           +   +   +  +L  +I       + ++PG   K   +I
Sbjct: 107 LYEELGIRSIEDLKRAIERGE---LLKLPGFGPKRVEKI 142


>gi|300863596|ref|ZP_07108540.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Oscillatoria sp. PCC 6506]
 gi|300338395|emb|CBN53682.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Oscillatoria sp. PCC 6506]
          Length = 498

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            L+++ GVG ++A  +++            L++   + ++PG+  K+  R
Sbjct: 448 ELETLPGVGPKLAQKIIAARKQQPFSS---LED---LDRVPGVGKKMLER 491


>gi|289522347|ref|ZP_06439201.1| late competence protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504183|gb|EFD25347.1| late competence protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 255

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 73  MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRI 124
            +LQS+ G+G + A  +LS R               + + ++ GI  K   +I
Sbjct: 200 EMLQSLPGIGPKTAQAILSYREDKGGFRS------VEELLEVKGIGPKKMEKI 246


>gi|92113642|ref|YP_573570.1| NAD-dependent DNA ligase LigB [Chromohalobacter salexigens DSM
           3043]
 gi|123387489|sp|Q1QXD7|LIGB_CHRSD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|91796732|gb|ABE58871.1| DNA ligase (NAD+) [Chromohalobacter salexigens DSM 3043]
          Length = 629

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
            G+G      ++       L++     ++  +  +PG+  K A
Sbjct: 459 PGIGPATWNQLVDAGLVKGLLDW-RTLDTAALEALPGVGKKTA 500


>gi|86132520|ref|ZP_01051114.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
 gi|85817081|gb|EAQ38265.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
          Length = 428

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLDRQWFMLLQSVQ-- 79
           V Y  Y PI     L  IG    +  E+ + Q    L  +GF          LL      
Sbjct: 253 VYYSGYIPISYDERLPSIGTEVPMMRESRLYQTDWLLRFYGF------DIRELLNKEHPN 306

Query: 80  ---GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
               +  ++  A+  L           I   + +++A+IPGI M+   +I+
Sbjct: 307 LETDIDPKLSWALRNLEHFPVD-----INKADRRMLARIPGIGMQSVHKII 352


>gi|325959641|ref|YP_004291107.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
           sp. AL-21]
 gi|325331073|gb|ADZ10135.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
          Length = 690

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L+ SV+ +G + A  V+      +L         + + +I GI  K A  I+
Sbjct: 638 LVVSVKRLGRKRARAVVKVFG-DDLKHVT----PEKLTRIDGIGPKTAEAII 684


>gi|327482626|gb|AEA85936.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri DSM 4166]
          Length = 553

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE--------LKGK 131
           GVGA     +L      +L+  + L ++  + Q+PGI    A+++           L   
Sbjct: 429 GVGAGSWQALLEAGLLPDLLAWLEL-DAAALEQVPGIGKARANKLAASFARARQRPLAQW 487

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
             +L    +Q     + +      +  +   A
Sbjct: 488 LKALGLPAKQLPPAADWDALAARDLAQWQAEA 519


>gi|284164964|ref|YP_003403243.1| hypothetical protein Htur_1685 [Haloterrigena turkmenica DSM 5511]
 gi|284014619|gb|ADB60570.1| hypothetical protein Htur_1685 [Haloterrigena turkmenica DSM 5511]
          Length = 554

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSK--VIAQIPGISMKIASRI 124
           V+G G   ++ VL  ++A  +   +   +     +  + GI  K A R+
Sbjct: 204 VEGYGRSRSIAVL-TLSADGVER-VETHDVTDFGLEAVSGIGPKTAERL 250


>gi|166226374|sp|A4VRF3|LIGB_PSEU5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 556

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE--------LKGK 131
           GVGA     +L      +L+  + L ++  + Q+PGI    A+++           L   
Sbjct: 432 GVGAGSWQALLEAGLLPDLLAWLEL-DAAALEQVPGIGKARANKLAASFARARQRPLAQW 490

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
             +L    +Q     + +      +  +   A
Sbjct: 491 LKALGLPAKQLPPAADWDALAARDLAQWQAEA 522


>gi|146284243|ref|YP_001174396.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri A1501]
 gi|145572448|gb|ABP81554.1| DNA ligase, NAD-dependent, putative [Pseudomonas stutzeri A1501]
          Length = 597

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE--------LKGK 131
           GVGA     +L      +L+  + L ++  + Q+PGI    A+++           L   
Sbjct: 473 GVGAGSWQALLEAGLLPDLLAWLEL-DAAALEQVPGIGKARANKLAASFARARQRPLAQW 531

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
             +L    +Q     + +      +  +   A
Sbjct: 532 LKALGLPAKQLPPAADWDALAARDLAQWQAEA 563


>gi|104774202|ref|YP_619182.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423283|emb|CAI98121.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|15146037|gb|AAK83664.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 388

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 220 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 271


>gi|104774548|ref|YP_619528.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423629|emb|CAI98576.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|145633382|ref|ZP_01789112.1| excinuclease ABC subunit C [Haemophilus influenzae 3655]
 gi|144985945|gb|EDJ92547.1| excinuclease ABC subunit C [Haemophilus influenzae 3655]
          Length = 609

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVG +    +L  +     + ++ + +    IA +PGIS K+A RI   LK 
Sbjct: 556 LETIEGVGTKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608


>gi|333030036|ref|ZP_08458097.1| Recombination protein recR [Bacteroides coprosuis DSM 18011]
 gi|332740633|gb|EGJ71115.1| Recombination protein recR [Bacteroides coprosuis DSM 18011]
          Length = 205

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 107 SKVIAQIPGISMKIASRIMTEL--KGK 131
               +++PGI  K A R++  L  + K
Sbjct: 14  VDEFSKLPGIGKKTAMRLVLHLLRQDK 40


>gi|329120958|ref|ZP_08249589.1| exodeoxyribonuclease V alpha subunit [Dialister micraerophilus DSM
           19965]
 gi|327471120|gb|EGF16574.1| exodeoxyribonuclease V alpha subunit [Dialister micraerophilus DSM
           19965]
          Length = 710

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 70  QWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + +  L S  ++G+G  VA  +++      L   I   N  ++  I GI  K   +I
Sbjct: 81  EIYNFLSSGLIKGIGPTVARRIVNHFGKKTLE--IFNDNIDMLLTIHGIGNKTLEKI 135


>gi|225028635|ref|ZP_03717827.1| hypothetical protein EUBHAL_02914 [Eubacterium hallii DSM 3353]
 gi|224954021|gb|EEG35230.1| hypothetical protein EUBHAL_02914 [Eubacterium hallii DSM 3353]
          Length = 430

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 18/97 (18%)

Query: 37  CLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVGARV--AMG 88
            L  IG    L  E  + Q    L  +GF +D     DR  F           +   A+ 
Sbjct: 267 ELPAIGTAPPLLREHRLYQADWLLRYYGFQADELLSSDRPNFNTFID-----PKCDWALR 321

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            L           I   + + + ++PGI  K A RI+
Sbjct: 322 HLEYFPVE-----INQASYEQLLRVPGIGNKSAGRIV 353


>gi|313891927|ref|ZP_07825528.1| helicase, RecD/TraA family [Dialister microaerophilus UPII 345-E]
 gi|313119570|gb|EFR42761.1| helicase, RecD/TraA family [Dialister microaerophilus UPII 345-E]
          Length = 710

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 70  QWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + +  L S  ++G+G  VA  +++      L   I   N  ++  I GI  K   +I
Sbjct: 81  EIYNFLSSGLIKGIGPTVARRIVNHFGKKTLE--IFNDNIDMLLTIHGIGNKTLEKI 135


>gi|167771685|ref|ZP_02443738.1| hypothetical protein ANACOL_03057 [Anaerotruncus colihominis DSM
           17241]
 gi|167666325|gb|EDS10455.1| hypothetical protein ANACOL_03057 [Anaerotruncus colihominis DSM
           17241]
          Length = 433

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGF----LSDLDRQWFMLLQSVQGVG 82
           Y P+++ S L  I     L  E  + Q    L  +GF    L D   Q F  L       
Sbjct: 252 YMPVQSDSLLPSIDTKPPLLREHRLYQADWLLRFYGFEASELLDETHQSFNPLID----- 306

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  + +         +     +++ ++PGI +K A RI+
Sbjct: 307 PKCNWALNHMEQFPVE-----VNTAPYELLLRVPGIGVKSAQRIV 346


>gi|325126437|gb|ADY85767.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 407

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|160878976|ref|YP_001557944.1| radical SAM domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160427642|gb|ABX41205.1| Radical SAM domain protein [Clostridium phytofermentans ISDg]
          Length = 539

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 22/121 (18%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDL----DRQWFMLLQSVQGVGARV--A 86
            TL  L             +     +R +GF +      +R  F +         +   A
Sbjct: 371 STLPVLPGGPPLLREH-RLYQADWLLRYYGFEATELLTKERPNFNVFFD-----PKCNWA 424

Query: 87  MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146
           +G L +         +   +   + ++PGI  K A RI+     KA  +S +  +D+  +
Sbjct: 425 IGHLEQFPVE-----VNTADYYTLLRVPGIGPKSAGRIV-----KARQMSKLRFEDLKKI 474

Query: 147 N 147
            
Sbjct: 475 G 475


>gi|158522359|ref|YP_001530229.1| RecD/TraA family helicase [Desulfococcus oleovorans Hxd3]
 gi|158511185|gb|ABW68152.1| helicase, RecD/TraA family [Desulfococcus oleovorans Hxd3]
          Length = 722

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G   A  +  +     L   ++  +   +A++PGI  K
Sbjct: 91  IKGIGPVTAERITKKFGKKTLQ--VLETDISRLAKVPGIGKK 130


>gi|325277353|ref|ZP_08142978.1| excinuclease ABC subunit C [Pseudomonas sp. TJI-51]
 gi|324097543|gb|EGB95764.1| excinuclease ABC subunit C [Pseudomonas sp. TJI-51]
          Length = 607

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94
           GD   L +   +R +  R   F        R     + S   V GVG +    +L     
Sbjct: 518 GDSAALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 574

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRI 124
             EL  + I +    IA+ PGIS K+A  I
Sbjct: 575 LQELNRASIDE----IAKAPGISKKLAESI 600


>gi|289434764|ref|YP_003464636.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171008|emb|CBH27550.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 202

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ+V G+G   A  ++       L ++I       + ++ GI  K   ++
Sbjct: 151 LQTVPGIGESKATAIIEYREKEGLFQTIED-----LQKVTGIGEKTIEKL 195


>gi|104774120|ref|YP_619100.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423201|emb|CAI98008.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 407

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|85860568|ref|YP_462770.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
 gi|85723659|gb|ABC78602.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
          Length = 584

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            L  + G+G + A  +   L   +  EL ++I+      + ++     + A  I+
Sbjct: 97  TLLEIPGIGPKTAYRLATELGISSVDELEQAILEGKVAHLFRL---GDRTAQNIL 148



 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQN-----SKVIAQIPGISMKIASRIMTE 127
             L+++ G+G  +A  +   +    LV    L++        + +IPGI  K A R+ TE
Sbjct: 56  EDLKALPGIGEAIASKMAELVRTGHLVAWETLRDSLPEGLSTLLEIPGIGPKTAYRLATE 115

Query: 128 L 128
           L
Sbjct: 116 L 116


>gi|158313894|ref|YP_001506402.1| excinuclease ABC subunit C [Frankia sp. EAN1pec]
 gi|229558031|sp|A8KYR0|UVRC_FRASN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|158109299|gb|ABW11496.1| excinuclease ABC, C subunit [Frankia sp. EAN1pec]
          Length = 692

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 38  LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQGVGARVAMGVLS 91
           L +  +   L++   +R +  R   F     RQ          L  V G+G      +L 
Sbjct: 574 LPRTSEA--LYLLQRVRDEAHR---FAITYHRQKRSTSMVASALDDVPGLGETRRKALLR 628

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
              +   V +   +      Q+PGI  + A  I+  L   A    +     +  +  E
Sbjct: 629 HFGSVAKVRAAGAEEIA---QVPGIGPRTAEAIVAALARSAPGTDAAPAPAVDPLTGE 683


>gi|281419971|ref|ZP_06250970.1| helicase, RecD/TraA family [Prevotella copri DSM 18205]
 gi|281406098|gb|EFB36778.1| helicase, RecD/TraA family [Prevotella copri DSM 18205]
          Length = 747

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G + A  ++ R     +   +I  + + + ++ GI  K   +I
Sbjct: 90  VKGIGPKYAHLIVERFGTDTIE--VIEDDIERLYEVAGIGKKRVEKI 134


>gi|139437156|ref|ZP_01771316.1| Hypothetical protein COLAER_00295 [Collinsella aerofaciens ATCC
           25986]
 gi|133776803|gb|EBA40623.1| Hypothetical protein COLAER_00295 [Collinsella aerofaciens ATCC
           25986]
          Length = 113

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 13/64 (20%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMG--VLSRITATELVESIILQNSKVIAQIPGISMKIA 121
            +  +R  F        +    A+   + +R+   E                PGI    A
Sbjct: 24  HTRRERAAFKAACKAGNIPPETAIEAPIAARLRVEEFAR-----------SFPGIGPVTA 72

Query: 122 SRIM 125
            +I+
Sbjct: 73  QKIV 76


>gi|187251076|ref|YP_001875558.1| transcription termination factor [Elusimicrobium minutum Pei191]
 gi|186971236|gb|ACC98221.1| Transcription termination factor [Elusimicrobium minutum Pei191]
          Length = 463

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 74  LLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           LL SV+G+G + A  ++ +  ++ E + ++     + +A + GI  K A++I+
Sbjct: 386 LLASVEGIGPKTAETLVKAGFSSVEKIAALE---PEHLATVQGIGEKSAAKII 435


>gi|307822050|ref|ZP_07652282.1| helix-hairpin-helix DNA-binding, class 1 [Methylobacter
           tundripaludum SV96]
 gi|307736616|gb|EFO07461.1| helix-hairpin-helix DNA-binding, class 1 [Methylobacter
           tundripaludum SV96]
          Length = 297

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 17/112 (15%)

Query: 69  RQWFMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIA-QIPGISMKIASRI 124
           R+ F  L  + G+G  +A  +   +     + L       +   +  QIPGI  + A RI
Sbjct: 51  REGFSALLELPGIGEGIARSINEYVMTGRMSRLESLQSGHDPIALFEQIPGIGPRSAHRI 110

Query: 125 M----------TELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
           +           EL    G+   +     + ++ V    AH+         A
Sbjct: 111 IETLHIDTLEALELAAHNGRLNKVPGFSTKKIALVQTWLAHVLGFRRPRFEA 162


>gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 664

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 34/212 (16%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            GV Y  YC   TLSC  ++       V    R+  + + GF      Q F  L  ++ +
Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468

Query: 82  G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127
               ++    L  +       +  L+ +I      +         IP +  K A+ ++ +
Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLINAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182
            K      ++ ++Q +   +  +    S+  F  +      I  L+NLG         + 
Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERID 588

Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207
                +K I     +       I+  L+++  
Sbjct: 589 ENPFMDKTIVVTGSLNNYSRGEIKDKLQSLGA 620


>gi|148239605|ref|YP_001224992.1| excinuclease ABC subunit C [Synechococcus sp. WH 7803]
 gi|147848144|emb|CAK23695.1| Nuclease subunit of the excinuclease complex (Excinuclease ABC
           subunit C) [Synechococcus sp. WH 7803]
          Length = 652

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R     L  + GVG +    +L+   +   +++I L + + +A+ PG+ + +A  I
Sbjct: 575 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQLASVETLAKAPGVGLALARDI 628


>gi|145592796|ref|YP_001157093.1| RecD/TraA family helicase [Salinispora tropica CNB-440]
 gi|145302133|gb|ABP52715.1| helicase, RecD/TraA family [Salinispora tropica CNB-440]
          Length = 741

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK-IA 121
           V+G+G   A  +++      L   II +    + ++PG+  K  A
Sbjct: 101 VKGIGPVFAERIVAHFGLETLR--IIEEEPARLVEVPGLGPKRTA 143


>gi|302386224|ref|YP_003822046.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
 gi|302196852|gb|ADL04423.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
          Length = 442

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGF----LSDLDRQWFMLLQS 77
           V Y  + P+   S L  + G    L     +     +R +GF    L   DR  F +L  
Sbjct: 256 VFYSAFVPVNKDSSLPALPGGPPLLREHRLYQADWLMRFYGFQAGELLSEDRPNFNVLLD 315

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           +   +   + ++PG+ +K   RI+
Sbjct: 316 -----PKCDWALRHLEMFPVE-----VNRADYYTLLRVPGMGVKSVKRII 355


>gi|317472453|ref|ZP_07931776.1| helix-hairpin-helix domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316900071|gb|EFV22062.1| helix-hairpin-helix domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 490

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 18/105 (17%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82
           Y P+   S L  +     L  E  + Q    L  +GF ++     DR  F ++       
Sbjct: 303 YVPLNEDSRLPSLDTAPPLLREHRLYQADWLLRFYGFHAEELLSTDRPNFNIMLD----- 357

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L           I   +   + ++PGI  K A RI+
Sbjct: 358 PKCDWALRHLELFPVE-----INRASYADLLRVPGIGTKSAYRIV 397


>gi|167747956|ref|ZP_02420083.1| hypothetical protein ANACAC_02688 [Anaerostipes caccae DSM 14662]
 gi|167652606|gb|EDR96735.1| hypothetical protein ANACAC_02688 [Anaerostipes caccae DSM 14662]
          Length = 490

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 18/105 (17%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82
           Y P+   S L  +     L  E  + Q    L  +GF ++     DR  F ++       
Sbjct: 303 YVPLNEDSRLPSLDTAPPLLREHRLYQADWLLRFYGFHAEELLSTDRPNFNIMLD----- 357

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L           I   +   + ++PGI  K A RI+
Sbjct: 358 PKCDWALRHLELFPVE-----INRASYADLLRVPGIGTKSAYRIV 397


>gi|294141552|ref|YP_003557530.1| recombination protein RecR [Shewanella violacea DSS12]
 gi|293328021|dbj|BAJ02752.1| recombination protein RecR [Shewanella violacea DSS12]
          Length = 199

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL+++        +  +PG+  K A R+  +L  +       + Q +     +  H  
Sbjct: 7   VDELIQA--------LKCLPGVGPKSAQRMAFQLLERDRKAGQSLGQALEKAMSDVGHCQ 58

Query: 155 SMPSFAINA 163
           S  +F    
Sbjct: 59  SCRTFTEEV 67


>gi|307266005|ref|ZP_07547552.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918967|gb|EFN49194.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 615

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 27  IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            I  P+ T     + +I +    F  T  ++             +++   L ++ G+G +
Sbjct: 523 EIDIPMTTKAFRLIAQIQEEAHRFAITFHKK----------KQSKRFKSELFNIPGIGEK 572

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
            A  +     + E + S  L++   + ++ G++ K A 
Sbjct: 573 RAKALYDAFKSIEEIRSASLED---LKKVKGMNEKAAQ 607


>gi|225019471|ref|ZP_03708663.1| hypothetical protein CLOSTMETH_03424 [Clostridium methylpentosum
           DSM 5476]
 gi|224947800|gb|EEG29009.1| hypothetical protein CLOSTMETH_03424 [Clostridium methylpentosum
           DSM 5476]
          Length = 452

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGF----LSDLDRQWFMLLQS 77
           V Y  Y P+     L  +G    L  E  + Q    L  +GF    L D   Q F  L  
Sbjct: 264 VFYSAYMPVSNNPLLPALGTRPPLLREHRLYQADWLLRFYGFQASELLDEQHQSFNPLID 323

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  +           +      ++ ++PGI ++ A RI+
Sbjct: 324 -----PKCNWAVNHMELFPVE-----VNRAPYDMLLRVPGIGVRSAQRIV 363


>gi|119356148|ref|YP_910792.1| hypothetical protein Cpha266_0306 [Chlorobium phaeobacteroides DSM
           266]
 gi|119353497|gb|ABL64368.1| conserved hypothetical protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 418

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 25/113 (22%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR---------QWFM 73
           V Y  + P+   S L  +     L     +     +R +GF +  +          + F 
Sbjct: 251 VYYSAFIPVNEDSRLPVLASPPLLREHRLYQADWLLRFYGF-TAEEILSDEAPNLDETFD 309

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                     + A  + +      E+  +    +  V+ ++PGI +  A RI+
Sbjct: 310 ---------PKTAWALRNPGFFPVEINRA----DYSVLLRVPGIGVTSARRIV 349


>gi|88808548|ref|ZP_01124058.1| excinuclease ABC subunit C [Synechococcus sp. WH 7805]
 gi|88787536|gb|EAR18693.1| excinuclease ABC subunit C [Synechococcus sp. WH 7805]
          Length = 651

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R     L  + GVG +    +L+   +   +++I L + + + + PG+ + +A  I
Sbjct: 575 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQLASVETLVKAPGVGLALARDI 628


>gi|329667033|gb|AEB92981.1| Transposase [Lactobacillus johnsonii DPC 6026]
          Length = 407

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657]
 gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657]
          Length = 664

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 27/172 (15%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQ 79
            GV Y  YC   TLSC  ++       V    R+  + + GF      Q F  L  +S+ 
Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSGKTAEQLFERLDIKSIS 469

Query: 80  GVGARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127
            +  ++    L  +       +  L+++I      +         IP +  K A+ ++ +
Sbjct: 470 DL-YKIRKEELLTLDKFGDKKSQNLIDAIENSKNCDLASFIYALGIPNVGKKTANDLVMK 528

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQ 174
            K      ++ ++Q +   +  +    S+  F  +      I  L+NLG   
Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKP 580


>gi|332800255|ref|YP_004461754.1| Recombination protein recR [Tepidanaerobacter sp. Re1]
 gi|332697990|gb|AEE92447.1| Recombination protein recR [Tepidanaerobacter sp. Re1]
          Length = 198

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 110 IAQIPGISMKIASRI---MTEL-KGKAISLSSVVQQDMSCVN 147
           ++++PGI  K A R+   + ++ K +  SL+  + Q    + 
Sbjct: 15  LSRLPGIGPKTAQRLAFYILKMSKDRVESLADAILQAKELIT 56


>gi|300709537|ref|YP_003735351.1| excinuclease ABC subunit C [Halalkalicoccus jeotgali B3]
 gi|299123220|gb|ADJ13559.1| excinuclease ABC subunit C [Halalkalicoccus jeotgali B3]
          Length = 577

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           L  V G+G +    +L R  + E + +  +++   +  + GI  K A R +TE
Sbjct: 527 LDDVPGIGPKTRTSLLRRFGSVEGIRTASVED---LRSVEGIGEKTA-RTITE 575


>gi|325955747|ref|YP_004286357.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325955835|ref|YP_004286445.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325955967|ref|YP_004286577.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325956790|ref|YP_004292202.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325957209|ref|YP_004292621.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325332312|gb|ADZ06220.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325332400|gb|ADZ06308.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325332532|gb|ADZ06440.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325333355|gb|ADZ07263.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325333774|gb|ADZ07682.1| transposase [Lactobacillus acidophilus 30SC]
 gi|329666817|gb|AEB92765.1| transposase [Lactobacillus johnsonii DPC 6026]
 gi|329666923|gb|AEB92871.1| putative transposase [Lactobacillus johnsonii DPC 6026]
 gi|329667102|gb|AEB93050.1| transposase [Lactobacillus johnsonii DPC 6026]
 gi|329667105|gb|AEB93053.1| hypothetical protein LJP_0725 [Lactobacillus johnsonii DPC 6026]
 gi|329667329|gb|AEB93277.1| hypothetical protein LJP_0951c [Lactobacillus johnsonii DPC 6026]
 gi|329667674|gb|AEB93622.1| hypothetical protein LJP_1300 [Lactobacillus johnsonii DPC 6026]
 gi|329667826|gb|AEB93774.1| transposase [Lactobacillus johnsonii DPC 6026]
          Length = 407

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 247 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 290


>gi|296270098|ref|YP_003652730.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
 gi|296092885|gb|ADG88837.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
          Length = 562

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 24/144 (16%)

Query: 37  CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF-----MLLQSVQGVGARVAMGV-- 89
            +  +G+     VE  +R+       F    + +         L  +  +G + A+ +  
Sbjct: 53  KIPHVGEAIGKKVEEFLRRGS-----FRQLDELRARIPAGVRALTRIPSLGPKRALLLYN 107

Query: 90  -LSRITATELVESIILQNSKVIAQIPGISMKIASRIM-----TELKGKAISLS---SVVQ 140
            L   +   L E+I       +A + G   K    ++      EL GK   L     + +
Sbjct: 108 ELGIDSPAALAEAIKAG---RLAGVRGFGPKAEENLLRGIEQLELAGKRFHLGIAIDLAE 164

Query: 141 QDMSCVNKEQAHICSMPSFAINAI 164
           + M+ +  E+             +
Sbjct: 165 RIMAALPAERIAYAGSVRRMKETV 188


>gi|91772435|ref|YP_565127.1| DNA repair protein RadC [Methanococcoides burtonii DSM 6242]
 gi|121684487|sp|Q12YU9|Y382_METBU RecName: Full=UPF0758 protein Mbur_0382
 gi|91711450|gb|ABE51377.1| DNA repair protein RadC [Methanococcoides burtonii DSM 6242]
          Length = 229

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 25/153 (16%)

Query: 62  GFLSDLDRQWFMLLQSVQGVGAR------VAMGVLSRITATELVESIILQNSKVIAQIPG 115
           GFLS+ +     LL  +   G++      ++  +LS     +L ++    N   + +I G
Sbjct: 27  GFLSNAE-----LLSVILRTGSKDENVVSMSSRILSEYNLKQLSQA----NISQLTKIRG 77

Query: 116 ISMKIASRI--MTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGY 172
           I    AS+I  + EL  K    +   ++ +   N   + +           ++AL    Y
Sbjct: 78  IGPAKASQIAALFELARKLEIFTDDPKRKIRSANDVYSLLYPRHRELKKEHLTAL----Y 133

Query: 173 ---GQDQATTAVVSVLKKEKNIADDSQIIRLAL 202
                +     V+S+     NI    ++ + AL
Sbjct: 134 LDTKNNIIKEEVISIGSLNANIVHPREVFKSAL 166


>gi|300908660|ref|ZP_07126123.1| transposase [Lactobacillus reuteri SD2112]
 gi|300894067|gb|EFK87425.1| transposase [Lactobacillus reuteri SD2112]
          Length = 416

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 201 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 260

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 261 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 304


>gi|289578945|ref|YP_003477572.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9]
 gi|289528658|gb|ADD03010.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9]
          Length = 615

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 17/99 (17%)

Query: 27  IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            I  P+ T     + +I +    F  T  ++             +++   L ++ G+G +
Sbjct: 523 EIDIPMTTKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572

Query: 85  VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
            A  +     +  E+  +  +++   + ++ G++ K A 
Sbjct: 573 RAKALYDAFNSIEEIKRA-SVED---LKKVEGMNEKAAQ 607


>gi|188586920|ref|YP_001918465.1| helicase, RecD/TraA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351607|gb|ACB85877.1| helicase, RecD/TraA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 726

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++G+G + A  ++       L   +I    + + ++PGI  + A++I
Sbjct: 92  IKGIGPKTAESLVEHFGKEVLQ--VIENTPEKLQEVPGIGKEKAAQI 136



 Score = 37.7 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 62  GFLS-DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMK 119
           GF      +   + LQ   GV    A+ +  R     + +  + +N   +A+ + GI  K
Sbjct: 139 GFQEHKQIKDIMVFLQEF-GVSPAFALKIYRRFGDNTIQK--VSENPYSLAREVFGIGFK 195

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
            A +I  E+ G ++      +  +  + +E++   +        I AL  L
Sbjct: 196 TADKIAREM-GVSVDSEERAKAAVVYLLEEKSQDGNTFLKREELIEALKEL 245


>gi|300814122|ref|ZP_07094405.1| recombination protein RecR [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511779|gb|EFK38996.1| recombination protein RecR [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 201

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 4/29 (13%)

Query: 107 SKVIAQIPGISMKIASRI---MTELKGKA 132
            + + ++PGI  K A R+   + ++  K 
Sbjct: 12  IRNLTRLPGIGPKTAQRLAYHIIDM-DKV 39


>gi|295092039|emb|CBK78146.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif
           [Clostridium cf. saccharolyticum K10]
          Length = 517

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGF-LSD---LDRQWFMLLQS 77
           V Y  + P+   S L  + G    L     +     +R +GF  S+    DR  F +L  
Sbjct: 323 VFYSAFVPVNDDSALPSLPGGPPLLREHRLYQADWLMRYYGFQASELLSEDRPNFNVLLD 382

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           I       + ++PGI +K A RI+
Sbjct: 383 -----PKCDWAVRNLGCFPVE-----INRAPYGELLRVPGIGVKSAMRIV 422


>gi|291087599|ref|ZP_06346894.2| biotin synthase related domain containing protein [Clostridium sp.
           M62/1]
 gi|291074414|gb|EFE11778.1| biotin synthase related domain containing protein [Clostridium sp.
           M62/1]
          Length = 561

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGF-LSD---LDRQWFMLLQS 77
           V Y  + P+   S L  + G    L     +     +R +GF  S+    DR  F +L  
Sbjct: 367 VFYSAFVPVNDDSALPSLPGGPPLLREHRLYQADWLMRYYGFQASELLSEDRPNFNVLLD 426

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           I       + ++PGI +K A RI+
Sbjct: 427 -----PKCDWAVRNLGCFPVE-----INRAPYGELLRVPGIGVKSAMRIV 466


>gi|317052006|ref|YP_004113122.1| radical SAM domain-containing protein [Desulfurispirillum indicum
           S5]
 gi|316947090|gb|ADU66566.1| radical SAM domain-containing protein [Desulfurispirillum indicum
           S5]
          Length = 438

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 72/200 (36%), Gaps = 36/200 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL--DRQWFMLLQSVQ 79
           V Y  Y P+   S L  +     L  E  + Q    L  +GF +     R    L     
Sbjct: 250 VYYSAYVPLNQDSLLPPLTQEPPLLREHRLYQADWLLRFYGFRAAELLSRDLPNLDTRFD 309

Query: 80  GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT----------E 127
               ++  A+  L           +   + + + ++PGI ++ A +++T          +
Sbjct: 310 ---PKLFWALHHLESFPLH-----VESASYEELLRVPGIGVRGARQLVTARRQCRLREED 361

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ----ATTAVVS 183
           LK     L  V+++    +     ++ +       ++  L +L   + Q    A  A   
Sbjct: 362 LK----KLGIVMKRARFFLCLGGRYLGNSADLTRESL--LESL-LSRKQQRTRAKFAGAP 414

Query: 184 VLKKEKNIADDSQIIRL-AL 202
            L  E ++ D S  IRL AL
Sbjct: 415 ALFDEPDLFDPSTDIRLSAL 434


>gi|189182988|ref|YP_001936773.1| exodeoxyribonuclease V alpha subunit [Orientia tsutsugamushi str.
           Ikeda]
 gi|189179759|dbj|BAG39539.1| exodeoxyribonuclease V alpha subunit [Orientia tsutsugamushi str.
           Ikeda]
          Length = 731

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++     L    G+G   A  ++       L   I  Q+   + ++PGI    A +I
Sbjct: 96  EKYLASGLIK--GIGPIYAKKLVQTFGLDVL-TVIENQDP-ALKKVPGIGPIRAKKI 148


>gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
 gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
          Length = 662

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 71/245 (28%), Gaps = 57/245 (23%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149
           +I       +        IP + +K A  ++      E   KA     V  QD+  +   
Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI-------IRLAL 202
                      +  I+ L++LG         V+  L   K +     +       I+  L
Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESLFMGKTVVVTGTLENYSRTSIKEKL 614

Query: 203 RAISC 207
            ++  
Sbjct: 615 ESLGA 619


>gi|159038878|ref|YP_001538131.1| excinuclease ABC subunit C [Salinispora arenicola CNS-205]
 gi|189038084|sp|A8LW31|UVRC_SALAI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157917713|gb|ABV99140.1| excinuclease ABC, C subunit [Salinispora arenicola CNS-205]
          Length = 660

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 17/112 (15%)

Query: 27  IIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQ 79
            ++ P     + L +  +   L++   +R +  R   F          R+     L  V 
Sbjct: 549 EVWLPDDDFPAILPRTSEG--LYLLQRVRDEAHR---FAITFHRQRRSRRMTESALDRVS 603

Query: 80  GVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           G+G      +L    +   L  + + +    I ++PGI  + A  I+  L  
Sbjct: 604 GLGEVRRKALLRHFGSLKRLAAASVEE----ITEVPGIGKRTAEAILAALAD 651


>gi|288574755|ref|ZP_06393112.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570496|gb|EFC92053.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 230

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCP 31
           I  ++  +     D +++ V+GV Y + C 
Sbjct: 198 IKYLRDKLREHKMDSIVVTVRGVGYKVQCS 227


>gi|90413709|ref|ZP_01221698.1| excinuclease ABC subunit C [Photobacterium profundum 3TCK]
 gi|90325330|gb|EAS41824.1| excinuclease ABC subunit C [Photobacterium profundum 3TCK]
          Length = 589

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+ V+G+G +    +L  +    EL  +   +    IA++PGIS  +A +I
Sbjct: 536 LEDVEGIGPKRRQALLKFMGGLHELKRASREE----IAKVPGISKALAEKI 582


>gi|282882934|ref|ZP_06291539.1| recombination protein RecR [Peptoniphilus lacrimalis 315-B]
 gi|281297345|gb|EFA89836.1| recombination protein RecR [Peptoniphilus lacrimalis 315-B]
          Length = 201

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 4/29 (13%)

Query: 107 SKVIAQIPGISMKIASRI---MTELKGKA 132
            + + ++PGI  K A R+   + ++  K 
Sbjct: 12  IRNLTRLPGIGPKTAQRLAYHIIDM-DKV 39


>gi|218779846|ref|YP_002431164.1| recombination protein RecR [Desulfatibacillum alkenivorans AK-01]
 gi|226738997|sp|B8FG16|RECR_DESAA RecName: Full=Recombination protein recR
 gi|218761230|gb|ACL03696.1| recombination protein RecR [Desulfatibacillum alkenivorans AK-01]
          Length = 199

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 107 SKVIAQIPGISMKIASRIMTE-LKGKAISLSSVVQQDMSC 145
            K ++++PGI  K A R+    L+G      ++ +     
Sbjct: 12  IKQLSKLPGIGEKTAERLALHILRGSVKDAQALAESISEA 51


>gi|54309405|ref|YP_130425.1| excinuclease ABC subunit C [Photobacterium profundum SS9]
 gi|81399352|sp|Q6LQ03|UVRC_PHOPR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|46913841|emb|CAG20623.1| putative excinuclease ABC, subunit C [Photobacterium profundum SS9]
          Length = 616

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+ V+G+G +    +L  +    EL  +   +    IA++PGIS  +A +I
Sbjct: 563 LEDVEGIGPKRRQALLKFMGGLHELKRASREE----IAKVPGISKALAEKI 609


>gi|325956729|ref|YP_004292141.1| transposase [Lactobacillus acidophilus 30SC]
 gi|325333294|gb|ADZ07202.1| transposase [Lactobacillus acidophilus 30SC]
          Length = 365

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 145 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 204

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 205 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 248


>gi|148284229|ref|YP_001248319.1| helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V)
           [Orientia tsutsugamushi str. Boryong]
 gi|146739668|emb|CAM79461.1| Helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V)
           [Orientia tsutsugamushi str. Boryong]
          Length = 731

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++     L    G+G   A  ++       L   I  Q+   + ++PGI    A +I
Sbjct: 96  EKYLASGLIK--GIGPIYAKKLVQTFGLDVL-TVIENQDP-ALKKVPGIGPIRAKKI 148


>gi|227545269|ref|ZP_03975318.1| transposase [Lactobacillus reuteri CF48-3A]
 gi|227184751|gb|EEI64822.1| transposase [Lactobacillus reuteri CF48-3A]
          Length = 410

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 201 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 260

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 261 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 304


>gi|317486174|ref|ZP_07945013.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
 gi|316922565|gb|EFV43812.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
          Length = 671

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 21  VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGF------LSDLDRQWFML 74
              V   I+ P R+ + L        L    H+R        F       +         
Sbjct: 560 AGNVGDRIFLPGRS-NPLPLRDGSAELLFLQHIRDTAHH---FVIGRHRRARAGAALSAE 615

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L  + GVG   A  +     A +   +II      +A IPGI  + A  +   LK
Sbjct: 616 LLRIPGVGKATARLLWDHFKALD---AIIAATPAQLAAIPGIGPRKAEALAGSLK 667


>gi|296269970|ref|YP_003652602.1| excinuclease ABC subunit C [Thermobispora bispora DSM 43833]
 gi|296092757|gb|ADG88709.1| excinuclease ABC, C subunit [Thermobispora bispora DSM 43833]
          Length = 644

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM-LLQSVQGVGARVAMGVLSRI 93
           L  L +I D    F  T+ R          S   +      L  + G+G      +L   
Sbjct: 558 LYLLQRIRDEAHRFAITYHR----------SKRSKALKESALDGIPGLGPARRQALLRHF 607

Query: 94  -TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            +   L ++   +    I  +PGI    A  I++ L+G
Sbjct: 608 GSLKRLRDATEEE----IRAVPGIGPATAEAIVSALRG 641


>gi|281200766|gb|EFA74984.1| hypothetical protein PPL_12018 [Polysphondylium pallidum PN500]
          Length = 880

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQ-NSKV-----IAQIPGISMKIASRIMTE 127
           Q + GVGA++A  V   +   +L + I LQ + K+     I+++ GI   IA +++ E
Sbjct: 242 QKLDGVGAKIAKKVQEILDTGKLAKLIKLQSDEKLVAINNISRVSGIGPAIAKKLVEE 299


>gi|116514226|ref|YP_813132.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093541|gb|ABJ58694.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 189

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 21  MAINNILSAEEECQTALQEMAKLTPKRDLEILTSIPGIGENTALRIISELGD 72


>gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052]
 gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052]
          Length = 663

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 33/202 (16%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARV----- 85
            TLSC  ++       V    R+  + + GF      Q F  L  +S+  +  ++     
Sbjct: 423 NTLSCKPQL---VKTIVHYASRE-AMNIAGFSERTAEQLFEKLNIKSISDL-YKLKEEDL 477

Query: 86  -AMGVLSRITATELVESIILQNSKVIAQ------IPGISMKIASRIM-----TE-LKGKA 132
             +   +   A  L+E+I       +        IP + +K A  ++      E LK  A
Sbjct: 478 IGLEKFAAKKAQNLLEAIEKSKDCELYAFIYALGIPNVGVKTAKDLVSRFESIEGLKN-A 536

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
                V  QD+  +  +           +  I  L++LG         V++   + K + 
Sbjct: 537 TFEELVGVQDVGDIVAQGVLAFFKEEKVLQTIEELLSLGVSPKYEEKEVIASAFEGKTVV 596

Query: 193 DDSQI-------IRLALRAISC 207
               +       I+  L ++  
Sbjct: 597 ATGSLKNYSRTEIKDKLESLGA 618


>gi|302343840|ref|YP_003808369.1| recombination protein RecR [Desulfarculus baarsii DSM 2075]
 gi|301640453|gb|ADK85775.1| recombination protein RecR [Desulfarculus baarsii DSM 2075]
          Length = 192

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 109 VIAQIPGISMKIASRIMTEL 128
            + ++PGI  K A R+   L
Sbjct: 3   ALCRLPGIGRKTAERLALHL 22


>gi|315150112|gb|EFT94128.1| comEA protein [Enterococcus faecalis TX0012]
          Length = 225

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVDRL 217


>gi|255994276|ref|ZP_05427411.1| recombination protein RecR [Eubacterium saphenum ATCC 49989]
 gi|255993944|gb|EEU04033.1| recombination protein RecR [Eubacterium saphenum ATCC 49989]
          Length = 198

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 107 SKVIAQIPGISMKIASRI---MTELKG-KAISLSSVVQQDMSCVNK 148
              ++++PGI  K A R+   +T+++  KA+S+S  +++ ++ +  
Sbjct: 11  ITELSRLPGIGRKTAQRLAIFITDMEDNKALSISRAIEEAVNNLKP 56


>gi|331701090|ref|YP_004398049.1| RecD/TraA family helicase [Lactobacillus buchneri NRRL B-30929]
 gi|329128433|gb|AEB72986.1| helicase, RecD/TraA family [Lactobacillus buchneri NRRL B-30929]
          Length = 827

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 21/108 (19%)

Query: 107 SKVIA--QIPGISMKIASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAI 161
            K ++  Q PG+  K A R++  L   AI      + V  D+    K ++ I        
Sbjct: 103 VKYLSGDQFPGVGKKTAERVVDVLGDDAIEKITADNRVLDDVPISAKLRSAIIENLDADD 162

Query: 162 NAISALVNL---GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           N    +V L   G+    A+ A+     ++            AL+ IS
Sbjct: 163 NLEKTIVGLNSYGFSSAIAS-AIYQKYHED------------ALKIIS 197


>gi|257438675|ref|ZP_05614430.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165]
 gi|257198904|gb|EEU97188.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165]
          Length = 615

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            L  V GVG + A  ++++  +   V ++       +   PG+  ++A  I
Sbjct: 562 TLTEVPGVGPKTAKALMTQFKS---VGAVREATPDQLENTPGVGPQLAQTI 609


>gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502]
 gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC
           19397]
 gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall]
 gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502]
 gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397]
 gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall]
          Length = 664

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 34/212 (16%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            GV Y  YC   TLSC  ++       V    R+  + + GF      Q F  L  ++ +
Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468

Query: 82  G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127
               ++    L  +       +  L+++I      +         IP +  K A+ ++ +
Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182
            K      ++ ++Q +   +  +    S+  F  +      I  L+NLG         + 
Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKVISNIEELLNLGVKPYYEEERID 588

Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207
                +K I     +       I+  L+++  
Sbjct: 589 ENPFMDKTIVVTGSLNNYSRGEIKDKLQSLGA 620


>gi|146328633|ref|YP_001209842.1| recombination protein RecR [Dichelobacter nodosus VCS1703A]
 gi|166221936|sp|A5EY33|RECR_DICNV RecName: Full=Recombination protein recR
 gi|146232103|gb|ABQ13081.1| recombination protein RecR [Dichelobacter nodosus VCS1703A]
          Length = 201

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 19/40 (47%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146
            + +  + G+  K A R+  +L  K  + ++ + + ++  
Sbjct: 11  VQALTCLSGVGKKTAQRMALDLLLKKNAEAATLAKALTTA 50


>gi|116514767|ref|YP_813673.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116094082|gb|ABJ59235.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 407

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 37/104 (35%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94
           L   +      L+ + G+G + A                             M + + ++
Sbjct: 187 LETKEVDIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246

Query: 95  ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           A E  ++ + +        + +++  +PGI    A RI++EL  
Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSLPGIGENTALRIISELGD 290


>gi|110637455|ref|YP_677662.1| recombination protein RecR [Cytophaga hutchinsonii ATCC 33406]
 gi|122966886|sp|Q11W94|RECR_CYTH3 RecName: Full=Recombination protein recR
 gi|110280136|gb|ABG58322.1| recombination protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 205

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 110 IAQIPGISMKIASRIMTELKGKAISLSSVVQQDM 143
           I+++PGI  K A R++  L  K    S  +   +
Sbjct: 15  ISKLPGIGKKTALRLVLHLLKKESKESESLANAL 48


>gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra]
 gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra]
          Length = 664

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 34/212 (16%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            GV Y  YC   TLSC  ++       V    R+  + + GF      Q F  L  ++ +
Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468

Query: 82  G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127
               ++    L  +       +  L+++I      +         IP +  K A+ ++ +
Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182
            K      ++ ++Q +   +  +    S+  F  +      I  L+NLG         + 
Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERID 588

Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207
                +K I     +       I+  L+++  
Sbjct: 589 ENPFMDKTIVVTGSLNNYSRGEIKDKLQSLGA 620


>gi|186682939|ref|YP_001866135.1| phospholipase D/transphosphatidylase [Nostoc punctiforme PCC 73102]
 gi|186465391|gb|ACC81192.1| phospholipase D/Transphosphatidylase [Nostoc punctiforme PCC 73102]
          Length = 186

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 90  LSRITATELVESIILQNSKV-----IAQIPGISMKIASRIMT 126
           +   +++EL ++I   N  +     +  +PG+  K+A RI+ 
Sbjct: 113 IKSSSSSEL-QAIKQININIASLPELETLPGVGKKLAQRIIL 153


>gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str.
           Langeland]
 gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland]
 gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613]
          Length = 664

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 34/212 (16%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            GV Y  YC   TLSC  ++       V    R+  + + GF      Q F  L  ++ +
Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468

Query: 82  G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127
               ++    L  +       +  L+++I      +         IP +  K A+ ++ +
Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182
            K      ++ ++Q +   +  +    S+  F  +      I  L+NLG         + 
Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERID 588

Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207
                +K I     +       I+  L+++  
Sbjct: 589 ENPFMDKTIVVTGSLNNYSRGEIKDKLQSLGA 620


>gi|220909545|ref|YP_002484856.1| recombination protein RecR [Cyanothece sp. PCC 7425]
 gi|254790763|sp|B8HXF0|RECR_CYAP4 RecName: Full=Recombination protein recR
 gi|219866156|gb|ACL46495.1| recombination protein RecR [Cyanothece sp. PCC 7425]
          Length = 205

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + + ++PG+  K A R+   L
Sbjct: 13  IEQLQRLPGVGPKTAQRLALHL 34


>gi|325126438|gb|ADY85768.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 169

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 87  MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130
           M + + ++A E  ++ + +        + +++  IPGI    A RI++EL  
Sbjct: 1   MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 52


>gi|158520557|ref|YP_001528427.1| recombination protein RecR [Desulfococcus oleovorans Hxd3]
 gi|226738998|sp|A8ZU38|RECR_DESOH RecName: Full=Recombination protein recR
 gi|158509383|gb|ABW66350.1| recombination protein RecR [Desulfococcus oleovorans Hxd3]
          Length = 199

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 5/34 (14%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
              +  +I       ++++PGI  K A R+   L
Sbjct: 5   PPSIRNAISH-----LSRLPGIGQKTAERLAMHL 33


>gi|85712671|ref|ZP_01043717.1| Recombinational DNA repair protein [Idiomarina baltica OS145]
 gi|85693521|gb|EAQ31473.1| Recombinational DNA repair protein [Idiomarina baltica OS145]
          Length = 202

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 18/53 (33%)

Query: 110 IAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
           + ++PG+  K A R+   L  +    +  +   +    +   H     +    
Sbjct: 16  LKRLPGVGKKTAQRMAFHLLERDREGAQRLADSLHNAVERVGHCQQCRTLTEE 68


>gi|323481438|gb|ADX80877.1| competence protein ComEA helix-hairpin-helix repeat region domain
           protein [Enterococcus faecalis 62]
          Length = 214

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  +PGI  K   R+
Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVDRL 206


>gi|313677041|ref|YP_004055037.1| recombination protein recr [Marivirga tractuosa DSM 4126]
 gi|312943739|gb|ADR22929.1| recombination protein RecR [Marivirga tractuosa DSM 4126]
          Length = 202

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 28/68 (41%)

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156
           E    +I       +++PGI  K A R++  L  +  + ++ + Q +  + +   +    
Sbjct: 2   EFSSKLIESAVNEFSKLPGIGKKTALRLVLHLLKQDENFTTDIAQSLVDMRQNIKYCKKC 61

Query: 157 PSFAINAI 164
            + +   +
Sbjct: 62  HNISDEVV 69


>gi|308049925|ref|YP_003913491.1| Excinuclease ABC subunit C [Ferrimonas balearica DSM 9799]
 gi|307632115|gb|ADN76417.1| Excinuclease ABC subunit C [Ferrimonas balearica DSM 9799]
          Length = 612

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+S+ G+GA+    +L  +    EL  + + +    +A++PGIS ++A +I
Sbjct: 560 LESIPGIGAKRRQQLLKFLGGMQELKRASVAE----LAKVPGISPQLAQKI 606


>gi|284166887|ref|YP_003405166.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM
           5511]
 gi|284016542|gb|ADB62493.1| DNA mismatch repair protein MutS domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 694

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+++ GVG + A  + +         ++   +   IA  PGI+   A+RI
Sbjct: 3   LETIPGVGEKTARALEALDEPE---RALRRGDVATIATAPGITQGRAARI 49


>gi|325120871|emb|CBZ56426.1| hypothetical protein NCLIV_068500 [Neospora caninum Liverpool]
          Length = 620

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 21/76 (27%)

Query: 71  WFMLLQSVQGV----GARVAMGVLSRITATELVESIILQNSKVIA--------------- 111
            F  LQS  GV     A  A   ++R+ A  LV++++ ++  ++A               
Sbjct: 182 VFRKLQSSPGVICIAAAYEADAQMARLAADGLVDAVLTEDGDLLAYQARKLICVLAGCDY 241

Query: 112 --QIPGISMKIASRIM 125
              IPG+ ++ A+R++
Sbjct: 242 APNIPGVGVRTAARLV 257


>gi|323698319|ref|ZP_08110231.1| excinuclease ABC, C subunit [Desulfovibrio sp. ND132]
 gi|323458251|gb|EGB14116.1| excinuclease ABC, C subunit [Desulfovibrio desulfuricans ND132]
          Length = 604

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            L S+ G+G R A  +  R  + E   +++  +   I  + GI  + A +I
Sbjct: 544 ELTSLPGIGPRTARILWDRFESLE---AMLEADPGTIGGLSGIGPRRAEKI 591



 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 110 IAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           +  +PGI  + A RI   L  +  SL ++++ D   +                A+ +L +
Sbjct: 545 LTSLPGIGPRTA-RI---LWDRFESLEAMLEADPGTIGGLSGIGPRRAEKIHAALQSLKS 600


>gi|319775000|ref|YP_004137488.1| UvrABC system protein C [Haemophilus influenzae F3047]
 gi|329123098|ref|ZP_08251668.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116]
 gi|317449591|emb|CBY85796.1| UvrABC system protein C [Haemophilus influenzae F3047]
 gi|327471653|gb|EGF17095.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116]
          Length = 609

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS+K+A RI   LK 
Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISLKLAERIFETLKN 608


>gi|21673022|ref|NP_661087.1| hypothetical protein CT0181 [Chlorobium tepidum TLS]
 gi|21646087|gb|AAM71429.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 463

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 13/107 (12%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82
           V Y  + P+   + L  +     L     +     +R +GF ++      +L      + 
Sbjct: 296 VYYSAFVPVNDDNRLPVLAAPPLLREHRLYQADWLLRFYGFSAEE-----ILSDDAPNLD 350

Query: 83  ----ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                + A  +            I   +   + ++PGI +  A RI+
Sbjct: 351 ESFDPKTAWALRH---PEFFPVEINRADYATLLRVPGIGITSAKRII 394


>gi|163847590|ref|YP_001635634.1| excinuclease ABC subunit C [Chloroflexus aurantiacus J-10-fl]
 gi|222525445|ref|YP_002569916.1| excinuclease ABC subunit C [Chloroflexus sp. Y-400-fl]
 gi|163668879|gb|ABY35245.1| excinuclease ABC, C subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222449324|gb|ACM53590.1| excinuclease ABC, C subunit [Chloroflexus sp. Y-400-fl]
          Length = 651

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L+ + G+G +    +L    + +   +I   +   +A +PG++ K A     ELK
Sbjct: 601 LEDIPGIGPKRKRALLKAFGSLD---AIRQASIDELAAVPGMTRKAAE----ELK 648


>gi|82523814|emb|CAI78557.1| exconuclease ABC subunit C [uncultured Chloroflexi bacterium]
          Length = 500

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ----WFMLLQSVQGVG 82
            ++ P ++ S L        L++   +R +  R +   S   R+        L +V G+G
Sbjct: 397 ELFIPGQSESLLLPRHSQA-LYLVQRVRDEAHR-YAITSHRQRRDKAGIASQLDTVPGIG 454

Query: 83  ARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
                 +L+      ++ ++   +    +  IPGI++K+A  I
Sbjct: 455 PMRRKALLAHFGGLQQIRQASTEE----LLTIPGITIKLAQAI 493


>gi|283458163|ref|YP_003362780.1| nuclease subunit of the excinuclease complex [Rothia mucilaginosa
           DY-18]
 gi|283134195|dbj|BAI64960.1| nuclease subunit of the excinuclease complex [Rothia mucilaginosa
           DY-18]
          Length = 646

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 75  LQSVQGVG-ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           L  V G+G  + A  +    +  ++ ++   +    +  +PGI   +A +I+  L
Sbjct: 595 LDEVPGLGEVKRAALIKHFGSVAQIKQASAEE----LTAVPGIGPALAQKILAAL 645


>gi|221632593|ref|YP_002521814.1| PHP domain-containing protein [Thermomicrobium roseum DSM 5159]
 gi|221156427|gb|ACM05554.1| PHP domain protein [Thermomicrobium roseum DSM 5159]
          Length = 581

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 30/156 (19%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQSVQGVGARVAMGV-- 89
           L  +  +G      +E ++R  ++  +     L R+     + L  V G+G   A  +  
Sbjct: 54  LDEIPGVGKAIAAKIEEYLRTGRLEYY---EQLKREVPLQAVDLLEVPGIGPARAHLLYE 110

Query: 90  -LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
            L   T  +L+++        + ++PG   K+  RI  E                     
Sbjct: 111 QLGITTIQDLLQAAQEH---KLRKLPGFGEKLEERIARE-------------AARLMQRS 154

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           ++  +      A   ++AL         A  A+   
Sbjct: 155 KRLLLGIALPVAEEVVAAL-----RPHAAIRAIDPA 185


>gi|168182222|ref|ZP_02616886.1| helicase, RecD/TraA family [Clostridium botulinum Bf]
 gi|237793487|ref|YP_002861039.1| helicase, RecD/TraA family [Clostridium botulinum Ba4 str. 657]
 gi|182674605|gb|EDT86566.1| helicase, RecD/TraA family [Clostridium botulinum Bf]
 gi|229263170|gb|ACQ54203.1| helicase, RecD/TraA family [Clostridium botulinum Ba4 str. 657]
          Length = 744

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + G+G   A  ++ +     L   I+  N + + +I GI  K    I
Sbjct: 88  ISGIGPVTAKKIVKKFGEETLN--ILENNIERLTEIEGIGKKKIEII 132


>gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160]
 gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase
           [Natronomonas pharaonis DSM 2160]
          Length = 845

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            +  ++Q + ++ +V  VG   A  +L    +   VE+++  + + +  + G+    A R
Sbjct: 777 KTLAEKQEY-VVSAVAEVGPVTARALLEHFGS---VEAVMSADEEALQAVDGVGDVTAER 832

Query: 124 I 124
           I
Sbjct: 833 I 833


>gi|326389756|ref|ZP_08211321.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325994238|gb|EGD52665.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 615

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 17/99 (17%)

Query: 27  IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            I  P+ T     + +I +    F  T  ++             +++   L ++ G+G +
Sbjct: 523 EIDIPMTTKAFRLVAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572

Query: 85  VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
            A  +     +  E+  +  +++   + ++ G++ K A 
Sbjct: 573 RAKALYDAFKSIEEIKRA-SVED---LKKVEGMNEKAAQ 607


>gi|293568334|ref|ZP_06679657.1| helicase, RecD/TraA family [Enterococcus faecium E1071]
 gi|291588943|gb|EFF20768.1| helicase, RecD/TraA family [Enterococcus faecium E1071]
          Length = 862

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 88  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171


>gi|257880325|ref|ZP_05659978.1| helicase RecD/TraA [Enterococcus faecium 1,230,933]
 gi|257814553|gb|EEV43311.1| helicase RecD/TraA [Enterococcus faecium 1,230,933]
          Length = 857

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 83  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 141

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 142 TIRLNHGMDQVIMGLNRYGFGSQLA 166


>gi|225418679|ref|ZP_03761868.1| hypothetical protein CLOSTASPAR_05903 [Clostridium asparagiforme
           DSM 15981]
 gi|225041800|gb|EEG52046.1| hypothetical protein CLOSTASPAR_05903 [Clostridium asparagiforme
           DSM 15981]
          Length = 579

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 26/109 (23%)

Query: 29  YCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGFLSDLDR--------QWFMLLQSV 78
           Y P+   S L  + G    L     +     +R +GF S  +           F+     
Sbjct: 392 YVPVNLDSSLPALPGGPPLLREHRLYQADWLLRFYGF-SAEELLSEGQPNFNVFLD---- 446

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                +   A+  L +         +   +   + ++PG+ +K A RI+
Sbjct: 447 ----PKCDWALRHLEQFPVE-----VNRADYASLLRVPGMGVKSARRIV 486


>gi|162448235|ref|YP_001621367.1| recombination DNA repair protein [Acholeplasma laidlawii PG-8A]
 gi|161986342|gb|ABX81991.1| recombination DNA repair protein [Acholeplasma laidlawii PG-8A]
          Length = 195

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128
           IIL+    + ++PGI  K A R+   L
Sbjct: 5   IILELIDDLKKLPGIGEKTAERLALHL 31


>gi|76800945|ref|YP_325953.1| DNA mismatch repair protein MutS-like protein [Natronomonas
           pharaonis DSM 2160]
 gi|76556810|emb|CAI48384.1| DNA mismatch repair protein MutS homolog [Natronomonas pharaonis
           DSM 2160]
          Length = 667

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           F  L+++ GVG + A  +           ++   +   IA+ PGI
Sbjct: 3   FEELEAIPGVGEKTAERLAELDDPE---AALSAGDVATIARAPGI 44


>gi|33865780|ref|NP_897339.1| excinuclease ABC subunit C [Synechococcus sp. WH 8102]
 gi|81574546|sp|Q7U6U0|UVRC_SYNPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|33632950|emb|CAE07761.1| Excinuclease ABC subunit C (UvrC) [Synechococcus sp. WH 8102]
          Length = 652

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R     L  + GVG +    +L+   +   +++I + +  ++++ PG+   +A  I
Sbjct: 575 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQMASVDLLSKAPGVGTALARDI 628


>gi|69249444|ref|ZP_00604980.1| Helicase RecD/TraA [Enterococcus faecium DO]
 gi|293559443|ref|ZP_06675981.1| helicase, RecD/TraA family [Enterococcus faecium E1162]
 gi|294621970|ref|ZP_06701115.1| helicase, RecD/TraA family [Enterococcus faecium U0317]
 gi|314937989|ref|ZP_07845300.1| helicase, RecD/TraA family [Enterococcus faecium TX0133a04]
 gi|314941585|ref|ZP_07848469.1| helicase, RecD/TraA family [Enterococcus faecium TX0133C]
 gi|314948429|ref|ZP_07851817.1| helicase, RecD/TraA family [Enterococcus faecium TX0082]
 gi|314951382|ref|ZP_07854434.1| helicase, RecD/TraA family [Enterococcus faecium TX0133A]
 gi|314991311|ref|ZP_07856790.1| helicase, RecD/TraA family [Enterococcus faecium TX0133B]
 gi|314995350|ref|ZP_07860456.1| helicase, RecD/TraA family [Enterococcus faecium TX0133a01]
 gi|68194155|gb|EAN08688.1| Helicase RecD/TraA [Enterococcus faecium DO]
 gi|291598449|gb|EFF29521.1| helicase, RecD/TraA family [Enterococcus faecium U0317]
 gi|291606598|gb|EFF35994.1| helicase, RecD/TraA family [Enterococcus faecium E1162]
 gi|313590443|gb|EFR69288.1| helicase, RecD/TraA family [Enterococcus faecium TX0133a01]
 gi|313594084|gb|EFR72929.1| helicase, RecD/TraA family [Enterococcus faecium TX0133B]
 gi|313596440|gb|EFR75285.1| helicase, RecD/TraA family [Enterococcus faecium TX0133A]
 gi|313599605|gb|EFR78448.1| helicase, RecD/TraA family [Enterococcus faecium TX0133C]
 gi|313642664|gb|EFS07244.1| helicase, RecD/TraA family [Enterococcus faecium TX0133a04]
 gi|313645154|gb|EFS09734.1| helicase, RecD/TraA family [Enterococcus faecium TX0082]
          Length = 862

 Score = 38.9 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 88  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171


>gi|257882179|ref|ZP_05661832.1| helicase RecD/TraA [Enterococcus faecium 1,231,502]
 gi|257890984|ref|ZP_05670637.1| helicase RecD/TraA [Enterococcus faecium 1,231,410]
 gi|257894239|ref|ZP_05673892.1| helicase RecD/TraA [Enterococcus faecium 1,231,408]
 gi|260562371|ref|ZP_05832885.1| helicase RecD/TraA [Enterococcus faecium C68]
 gi|257817837|gb|EEV45165.1| helicase RecD/TraA [Enterococcus faecium 1,231,502]
 gi|257827344|gb|EEV53970.1| helicase RecD/TraA [Enterococcus faecium 1,231,410]
 gi|257830618|gb|EEV57225.1| helicase RecD/TraA [Enterococcus faecium 1,231,408]
 gi|260073295|gb|EEW61636.1| helicase RecD/TraA [Enterococcus faecium C68]
          Length = 857

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 83  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 141

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 142 TIRLNHGMDQVIMGLNRYGFGSQLA 166


>gi|294618819|ref|ZP_06698345.1| helicase, RecD/TraA family [Enterococcus faecium E1679]
 gi|291594942|gb|EFF26293.1| helicase, RecD/TraA family [Enterococcus faecium E1679]
          Length = 862

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 88  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171


>gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
 gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
          Length = 706

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 22/116 (18%)

Query: 20  DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDL--------D--- 68
           D+ G+ Y     +     +  IGD     +     +    L GF            +   
Sbjct: 464 DIDGLGYETATALLEAGRVRDIGD-----IFHLTPESFEGLRGFAQKKIDQILRGVEAAR 518

Query: 69  -RQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
            R  + LL   S++ VG   A  +   + + E + +   ++   +A + G+  KIA
Sbjct: 519 HRPLWRLLVGLSIRHVGPTAARALARELRSLEAIAATSAED---LAAVEGVGPKIA 571


>gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro]
 gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri
           str. Fusaro]
          Length = 938

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+ ++  +G + A  +L    +   VE+I+  ++K + ++  I  K A++I
Sbjct: 881 LVSAIADIGPKAARNLLLHFGS---VEAIMKADAKELKKVNLIGPKRATKI 928


>gi|320333799|ref|YP_004170510.1| PHP domain-containing protein [Deinococcus maricopensis DSM 21211]
 gi|319755088|gb|ADV66845.1| PHP domain protein [Deinococcus maricopensis DSM 21211]
          Length = 562

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 23/138 (16%)

Query: 73  MLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           + L  V+G+G +    +      +   L E+        +A + G   K A +++     
Sbjct: 90  LTLLRVRGLGPKKVRALWDAGIDSLEALREAARDG---RLAALKGFGAKTAVKLL----- 141

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA---TTAVVSVLKK 187
                      + +   + + H+            AL  L      A     A  ++   
Sbjct: 142 --------EGAEFALAMQARQHLSVGVRIVETLTEALAGL--EPRAAGGVRRAAETIEDA 191

Query: 188 EKNIADDSQIIRLALRAI 205
           +  +   ++ +R  L  +
Sbjct: 192 QVTVTGTAEAVRARLTGL 209


>gi|293553072|ref|ZP_06673714.1| helicase, RecD/TraA family [Enterococcus faecium E1039]
 gi|291602781|gb|EFF32991.1| helicase, RecD/TraA family [Enterococcus faecium E1039]
          Length = 862

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 88  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171


>gi|289566003|ref|ZP_06446441.1| RecD/TraA family helicase [Enterococcus faecium D344SRF]
 gi|294616193|ref|ZP_06695990.1| helicase, RecD/TraA family [Enterococcus faecium E1636]
 gi|289162201|gb|EFD10063.1| RecD/TraA family helicase [Enterococcus faecium D344SRF]
 gi|291590948|gb|EFF22660.1| helicase, RecD/TraA family [Enterococcus faecium E1636]
          Length = 862

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 88  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171


>gi|257885372|ref|ZP_05665025.1| helicase RecD/TraA [Enterococcus faecium 1,231,501]
 gi|257821228|gb|EEV48358.1| helicase RecD/TraA [Enterococcus faecium 1,231,501]
          Length = 857

 Score = 38.9 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 83  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 141

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 142 TIRLNHGMDQVIMGLNRYGFGSQLA 166


>gi|261209254|ref|ZP_05923646.1| helicase RecD/TraA [Enterococcus faecium TC 6]
 gi|260076800|gb|EEW64535.1| helicase RecD/TraA [Enterococcus faecium TC 6]
          Length = 857

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 83  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 141

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 142 TIRLNHGMDQVIMGLNRYGFGSQLA 166


>gi|167758863|ref|ZP_02430990.1| hypothetical protein CLOSCI_01206 [Clostridium scindens ATCC 35704]
 gi|167663603|gb|EDS07733.1| hypothetical protein CLOSCI_01206 [Clostridium scindens ATCC 35704]
          Length = 444

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
            +   A+  L           I   + K++ ++PGI  K A+RI+     KA  L ++  
Sbjct: 319 PKCNWALKHLEYFPVE-----INRADYKMLLRVPGIGYKSATRIV-----KARRLGNLNF 368

Query: 141 QDM 143
           QD+
Sbjct: 369 QDI 371


>gi|163750247|ref|ZP_02157489.1| recombination protein RecR [Shewanella benthica KT99]
 gi|161330103|gb|EDQ01087.1| recombination protein RecR [Shewanella benthica KT99]
          Length = 199

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL++         +  +PG+  K A R+  +L  +       + Q +S    +  H  
Sbjct: 7   VDELIQ--------TLKCLPGVGPKSAQRMAFQLLERDRKAGQSLSQALSKAMSDVGHCQ 58

Query: 155 SMPSFAINA 163
           S  +F    
Sbjct: 59  SCRTFTEEV 67


>gi|307294418|ref|ZP_07574262.1| excinuclease ABC, C subunit [Sphingobium chlorophenolicum L-1]
 gi|306880569|gb|EFN11786.1| excinuclease ABC, C subunit [Sphingobium chlorophenolicum L-1]
          Length = 637

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  V G+G      +L        V+S  L++   + + PG+S  +A +I
Sbjct: 585 LDEVPGIGPSRKKALLMHFGTARAVKSAALED---LLKAPGVSKAVAQQI 631


>gi|20094872|ref|NP_614719.1| topoisomerase V [Methanopyrus kandleri AV19]
 gi|14325803|gb|AAK60014.1| topoisomerase V [Methanopyrus kandleri]
 gi|19888102|gb|AAM02649.1| Topoisomerase V [Methanopyrus kandleri AV19]
          Length = 984

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 52/178 (29%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------ 125
           F  L +++GVG ++A  +L  +    L     L   ++  ++ G+  ++A R++      
Sbjct: 621 FKFLLNIEGVGPKLAERILEAVDYD-LERLASLNPEELAEKVEGLGEELAERVVYAARER 679

Query: 126 TELKGKAIS---------------------------LSSVVQQDMSCVNKEQAHICSMPS 158
            E + K+                               S  +      N E + +  +P 
Sbjct: 680 VESRRKSGRQERSEEEWKEWLERKVGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPG 739

Query: 159 FAINAISALVNLGYG--------QDQATTAVV---SVLKKEKNIADDSQIIRLALRAI 205
               A++ LV  GY           +A   +    SV K ++    D       LR +
Sbjct: 740 IGDEAVARLVP-GYKTLRDAGLTPAEAERVLKRYGSVSKVQEGATPDE------LREL 790


>gi|87302683|ref|ZP_01085494.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701]
 gi|87282566|gb|EAQ74524.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701]
          Length = 687

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R     L  + G+G +    +L+   +   +++I L + + IA  PG+   +A ++
Sbjct: 602 ERMKRSRLSEIPGLGPKRVRDLLAHFRS---IDAIQLASPEQIAAAPGVGPALAQQV 655


>gi|170769376|ref|ZP_02903829.1| excinuclease ABC, C subunit [Escherichia albertii TW07627]
 gi|170121700|gb|EDS90631.1| excinuclease ABC, C subunit [Escherichia albertii TW07627]
          Length = 610

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQALAEKIFWSLK 609


>gi|294629435|ref|ZP_06707995.1| RecD/TraA family helicase [Streptomyces sp. e14]
 gi|292832768|gb|EFF91117.1| RecD/TraA family helicase [Streptomyces sp. e14]
          Length = 754

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  +        L   II +  K + ++PG+  K   +I
Sbjct: 110 VKGIGPVFADRITQHFGTDTLR--IIEEEPKRLIEVPGLGPKRTKKI 154


>gi|237808305|ref|YP_002892745.1| excinuclease ABC, C subunit [Tolumonas auensis DSM 9187]
 gi|237500566|gb|ACQ93159.1| excinuclease ABC, C subunit [Tolumonas auensis DSM 9187]
          Length = 614

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSV 78
                    T   +    D   L +  H+R +  R   F           ++   LL+ V
Sbjct: 510 GLETLIFGNTHEEIHLPADMPALHLIQHIRDESHR---FAITGHRQRRNKKRTESLLEKV 566

Query: 79  QGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
            GVGA+    +L  +    E++ +   +    +A++PGIS  +A R++ +
Sbjct: 567 PGVGAKRRQALLKYLGGMQEIIRATPDE----LAKVPGISPALA-RVIYD 611


>gi|167039707|ref|YP_001662692.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X514]
 gi|300915044|ref|ZP_07132359.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561]
 gi|307724967|ref|YP_003904718.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X513]
 gi|229557872|sp|B0K680|UVRC_THEPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|166853947|gb|ABY92356.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X514]
 gi|300888768|gb|EFK83915.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561]
 gi|307582028|gb|ADN55427.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X513]
          Length = 615

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 17/99 (17%)

Query: 27  IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            I  P+ T     + +I +    F  T  ++             +++   L ++ G+G +
Sbjct: 523 EIDIPMTTKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGKK 572

Query: 85  VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
            A  +     +  E+  +  +++   + ++ G++ K A 
Sbjct: 573 RAKALYDAFKSIEEIKRA-SVED---LKKVEGMNEKAAQ 607


>gi|316939783|gb|ADU73817.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 1313]
          Length = 708

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++G+G   A  ++       +   +I +    + ++PGI  K    I
Sbjct: 90  IKGIGPVNAKRIVKVFKEDTIR--VIEEEPDRLIEVPGIGKKRVEMI 134


>gi|258614725|ref|ZP_05712495.1| RecD/TraA family helicase [Enterococcus faecium DO]
          Length = 797

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 23  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 81

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 82  TIRLNHGMDQVIMGLNRYGFGSQLA 106


>gi|318075147|ref|ZP_07982479.1| excinuclease ABC subunit C [Streptomyces sp. SA3_actF]
          Length = 790

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 19/138 (13%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L ++ D    F  T+ R          S   ++ F    L  V G+G      +L  
Sbjct: 556 LYLLQRVRDEAHRFAITYQR----------SKRAKR-FRAGPLDEVPGLGQARKQALLKH 604

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
             +  +L  + I Q    I ++PGI  K A  I+     ++   +  V      +  + +
Sbjct: 605 FGSVKKLRAATIEQ----ICEVPGIGRKTAETILATFA-RSEPGAPAVNMTTGEILDDGS 659

Query: 152 HICSMPSFAINAISALVN 169
              +      +   A VN
Sbjct: 660 EDTTSEQPEPDTEDATVN 677


>gi|318056352|ref|ZP_07975075.1| excinuclease ABC subunit C [Streptomyces sp. SA3_actG]
          Length = 930

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 19/138 (13%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L ++ D    F  T+ R          S   ++ F    L  V G+G      +L  
Sbjct: 556 LYLLQRVRDEAHRFAITYQR----------SKRAKR-FRAGPLDEVPGLGQARKQALLKH 604

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
             +  +L  + I Q    I ++PGI  K A  I+     ++   +  V      +  + +
Sbjct: 605 FGSVKKLRAATIEQ----ICEVPGIGRKTAETILATFA-RSEPGAPAVNMTTGEILDDGS 659

Query: 152 HICSMPSFAINAISALVN 169
              +      +   A VN
Sbjct: 660 EDTTSEQPEPDTEDATVN 677


>gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
           II euryarchaeote KM3-136-D10]
          Length = 928

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 65  SDLDRQW--FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
            + ++Q     LL+S+  +G   A  +L    + E+   +   +   + Q+ GI    ++
Sbjct: 864 DEQEKQTNKLYLLESLPNIGPTTAKRLLDHFKSIEV---LTQADEAELCQVTGIGP-TSA 919

Query: 123 RIMTE-LKG 130
           R + E L+ 
Sbjct: 920 RAILEVLRD 928


>gi|307726755|ref|YP_003909968.1| PHP domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307587280|gb|ADN60677.1| PHP domain protein [Burkholderia sp. CCGE1003]
          Length = 580

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 74  LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKIASRIM 125
            L  + G+G +    +   +      +L  +      +++   PG   K   RI+
Sbjct: 95  ELLQIPGLGPKRVRALHEALDIQTLEDLDRAARQGRIRLL---PGFGEKTEQRII 146


>gi|187777242|ref|ZP_02993715.1| hypothetical protein CLOSPO_00789 [Clostridium sporogenes ATCC
           15579]
 gi|187774170|gb|EDU37972.1| hypothetical protein CLOSPO_00789 [Clostridium sporogenes ATCC
           15579]
          Length = 744

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + G+G   A  ++ +     L   I+  N + + +I GI  K    I
Sbjct: 88  ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIEII 132


>gi|78044731|ref|YP_359139.1| excinuclease ABC subunit C [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|90111061|sp|Q3AFE5|UVRC_CARHZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77996846|gb|ABB15745.1| excinuclease ABC, C subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 607

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI--M 125
           +    LL+ V+G+G +    +L++  +   L E+ + +    I  +PGI+ +IA R+  +
Sbjct: 548 KTLASLLEQVEGIGPKRRKQLLNKFGSIKNLREATVEE----ITAVPGITREIAERLKEL 603

Query: 126 TEL 128
            E+
Sbjct: 604 LEM 606


>gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund
           17B]
 gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B]
          Length = 667

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 25/175 (14%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90
            TLSC  ++       V  +  +D + + GF      Q F  L  +S+  +  ++    L
Sbjct: 425 NTLSCKPQL---VKTIVH-YASRDAMNIAGFSEKTAEQLFEKLNIKSISDL-YKLKKEDL 479

Query: 91  SRIT------ATELVESIILQNSKVIAQ------IPGISMKIASRIMTELKG----KAIS 134
             +       +  L+ +I       +        IP + +K A  I+ + K     K  +
Sbjct: 480 INLEKFGEKKSENLLNAIEKSKDCKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT 539

Query: 135 LSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD-QATTAVVSVLKK 187
              +V  QD+  +  +           IN I  L+NLG          V S+ K 
Sbjct: 540 FEELVSVQDVGDIVAQDVIEFFKEEKVINTIDELLNLGVNPIFDEVKIVESIFKD 594


>gi|323484316|ref|ZP_08089683.1| hypothetical protein HMPREF9474_01434 [Clostridium symbiosum
           WAL-14163]
 gi|323694684|ref|ZP_08108846.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323402310|gb|EGA94641.1| hypothetical protein HMPREF9474_01434 [Clostridium symbiosum
           WAL-14163]
 gi|323501276|gb|EGB17176.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 524

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  + P+   S L  +     L  E  + Q    L  +GF +      D+  F +   
Sbjct: 332 VFYSAFVPVNHDSLLPALPGGPPLLREHRLYQADWLLRYYGFHASELLSEDKPNFNVFLD 391

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           +       + ++PGI  K A RI+
Sbjct: 392 -----PKCDWALRNLGEFPVE-----VNHAPYASLLRVPGIGTKSAMRIV 431


>gi|160943016|ref|ZP_02090254.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445710|gb|EDP22713.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii
           M21/2]
          Length = 617

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
              ++D  G    I     T + +  I D    F   + +Q             + +   
Sbjct: 512 TRAIVDSDGREIAINMNRGTFTFITAIQDETHRFANAYRKQ---------QMKQKSYSST 562

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  V GVG + A  +L++  +   V ++       +   PG+  ++A  I
Sbjct: 563 LTEVPGVGPKTAKALLAQFKS---VGAVKDATPDQLENTPGVGRQLAQTI 609


>gi|222481008|ref|YP_002567245.1| DNA mismatch repair protein MutS domain protein [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222453910|gb|ACM58175.1| DNA mismatch repair protein MutS domain protein [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 665

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            L+++ GVGA+ A  +       + V ++   +   IA+ PG+
Sbjct: 2   ELEAIPGVGAKTAAAL---HELDDPVATVESGDVAAIARAPGV 41


>gi|330720119|gb|EGG98525.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC2047]
          Length = 608

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 14/91 (15%)

Query: 47  LFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGVGARVAMGVLSRIT-ATELV 99
           L +  H+R +  R   F     RQ          L+S+ GVG +    +L+      E+ 
Sbjct: 524 LHLIQHIRDEAHR---FAITSHRQARGKTRRTSPLESIPGVGPKRRRELLTFFGGIQEVE 580

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            +   +    IA++PGIS  +A  I   L+ 
Sbjct: 581 RASAEE----IAKVPGISKSMAEEIYASLRN 607


>gi|294495750|ref|YP_003542243.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666749|gb|ADE36598.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
          Length = 570

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 75  LQSVQGVGARVAMGVLSRITAT---ELVESIILQNSKVIAQIPGISMKI 120
           +  ++G+G + A  ++  +      +L E+I  Q  +   ++ G   K 
Sbjct: 95  IIKIRGLGPKKAKKLMDELDIQSIPDLKEAINNQEIR---KLEGFGKKT 140


>gi|293571558|ref|ZP_06682580.1| helicase, RecD/TraA family [Enterococcus faecium E980]
 gi|291608364|gb|EFF37664.1| helicase, RecD/TraA family [Enterococcus faecium E980]
          Length = 856

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 88  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQVSGLTKPKREMLAE 146

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171


>gi|257899603|ref|ZP_05679256.1| helicase RecD/TraA [Enterococcus faecium Com15]
 gi|257837515|gb|EEV62589.1| helicase RecD/TraA [Enterococcus faecium Com15]
          Length = 856

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A +I+ EL G     K I+  SV++Q       ++   A 
Sbjct: 88  ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQVSGLTKPKREMLAE 146

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171


>gi|168177501|ref|ZP_02612165.1| helicase, RecD/TraA family [Clostridium botulinum NCTC 2916]
 gi|182671377|gb|EDT83351.1| helicase, RecD/TraA family [Clostridium botulinum NCTC 2916]
          Length = 744

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + G+G   A  ++ +     L   I+  N + + +I GI  K    I
Sbjct: 88  ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIEII 132


>gi|167748267|ref|ZP_02420394.1| hypothetical protein ANACAC_03011 [Anaerostipes caccae DSM 14662]
 gi|317472189|ref|ZP_07931518.1| RecD/TraA family helicase [Anaerostipes sp. 3_2_56FAA]
 gi|167652259|gb|EDR96388.1| hypothetical protein ANACAC_03011 [Anaerostipes caccae DSM 14662]
 gi|316900278|gb|EFV22263.1| RecD/TraA family helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 740

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           ++GVG  +A  ++ +         II +  + +A++ G++ K A  I  E   K
Sbjct: 88  IKGVGPAIAKRIVKKFKMDTFR--IIEEEPERLAEVKGVTEKRARSIAVEFSEK 139


>gi|311747123|ref|ZP_07720908.1| probable secreted glycosyl hydrolase [Algoriphagus sp. PR1]
 gi|311302608|gb|EAZ82996.2| probable secreted glycosyl hydrolase [Algoriphagus sp. PR1]
          Length = 1155

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY---GQDQ 176
            A R++ E + K      VV+     +N ++     +   AINA+  L  LG       Q
Sbjct: 678 TAQRLIVETQNK-----EVVEGLYELINSQEVDEAGINGPAINALWTLKGLGELEGSNSQ 732

Query: 177 ATTAVVSVLKKEKNIADDSQIIR 199
           A   V   L    + A     +R
Sbjct: 733 AQDVVTKAL-SHPSAAVRKNAVR 754


>gi|239931154|ref|ZP_04688107.1| deoxyribonuclease [Streptomyces ghanaensis ATCC 14672]
 gi|291439519|ref|ZP_06578909.1| exodeoxyribonuclease V [Streptomyces ghanaensis ATCC 14672]
 gi|291342414|gb|EFE69370.1| exodeoxyribonuclease V [Streptomyces ghanaensis ATCC 14672]
          Length = 769

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  +        L   II +  + + ++PG+  K   RI
Sbjct: 104 VKGIGPVFADRITQHFGLDTLK--IIEEEPERLVEVPGLGPKRTKRI 148


>gi|153939064|ref|YP_001389532.1| RecD/TraA family helicase [Clostridium botulinum F str. Langeland]
 gi|152934960|gb|ABS40458.1| helicase, RecD/TraA family [Clostridium botulinum F str. Langeland]
          Length = 744

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + G+G   A  ++ +     L   I+  N + + +I GI  K    I
Sbjct: 88  ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIEII 132


>gi|170755250|ref|YP_001779796.1| RecD/TraA family helicase [Clostridium botulinum B1 str. Okra]
 gi|169120462|gb|ACA44298.1| helicase, RecD/TraA family [Clostridium botulinum B1 str. Okra]
          Length = 744

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + G+G   A  ++ +     L   I+  N + + +I GI  K    I
Sbjct: 88  ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIEII 132


>gi|168699142|ref|ZP_02731419.1| helicase, RecD/TraA family protein [Gemmata obscuriglobus UQM 2246]
          Length = 777

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 30/151 (19%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTELKGKAISL 135
           V+G+G   A  ++       L   +I     ++ Q+ GI  K+  +I    E + ++  +
Sbjct: 116 VKGIGPGYARRIVDVFGDRTLE--VIDATPVMLTQVKGIGPKLVEKIRKSWEEQRESQKI 173

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISA----L----------------VNLGYGQD 175
              +Q       +      +    AI  I A    L                V+LG   D
Sbjct: 174 LVFLQSHGIGTARAVRIYKTYGDQAIELIKANPYRLSGDIWGFGFKTADQLAVSLGIPPD 233

Query: 176 ---QATTAVVSVLKKEKNIADD---SQIIRL 200
              +A  AV  VL++E          +++R 
Sbjct: 234 SPFRAQAAVRHVLQEETGNGHVGFPEELLRE 264


>gi|307297547|ref|ZP_07577353.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916807|gb|EFN47189.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 256

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITA--------TELVESIILQNSKVIAQIP 114
           F +  D      L  V G+G  +   +L+ I            L  ++   + +V+  +P
Sbjct: 157 FRTSDD------LLKVPGIGPSILSEILASIVPLVGSEKQSGSLKVNVNTADEEVLCGLP 210

Query: 115 GISMKIASRIM 125
           G+   IA RI+
Sbjct: 211 GVGPVIAKRIV 221


>gi|258593671|emb|CBE70012.1| Recombination protein recR [NC10 bacterium 'Dutch sediment']
          Length = 199

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 18/41 (43%)

Query: 110 IAQIPGISMKIASRI------------------MTELKGKA 132
           + ++PGI  K A R+                  + ELK + 
Sbjct: 15  LVRLPGIGPKTAQRLTFHLLKAGREEAIALAQAIIELKDRI 55


>gi|257453792|ref|ZP_05619070.1| radical SAM [Enhydrobacter aerosaccus SK60]
 gi|257448719|gb|EEV23684.1| radical SAM [Enhydrobacter aerosaccus SK60]
          Length = 418

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 20/111 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDLDRQW-----FMLLQ 76
           V Y  Y P+ + + L  +G    +  E   +     +R +GF  + +        F+ L 
Sbjct: 252 VYYSGYVPMLSDNRLPAMGTPVPMVRENRLYQADWLMRFYGF--EAEEILPDDHPFLDL- 308

Query: 77  SVQGVGARVAMGV--LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                  ++A  +   S          I     K+I +IPGI  + A +I+
Sbjct: 309 ---DCDPKLAWAIRNKSHFPVN-----IQTAPYKMIVRIPGIGTRTAKKIV 351


>gi|256003597|ref|ZP_05428586.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360]
 gi|281416676|ref|ZP_06247696.1| helicase, RecD/TraA family [Clostridium thermocellum JW20]
 gi|255992388|gb|EEU02481.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360]
 gi|281408078|gb|EFB38336.1| helicase, RecD/TraA family [Clostridium thermocellum JW20]
          Length = 713

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++G+G   A  ++       +   +I +    + ++PGI  K    I
Sbjct: 90  IKGIGPVNAKRIVKVFKEDTIR--VIEEEPDRLIEVPGIGKKRVEMI 134


>gi|28572624|ref|NP_789404.1| excinuclease ABC subunit C [Tropheryma whipplei TW08/27]
 gi|81630094|sp|Q83NI9|UVRC_TROW8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28410756|emb|CAD67142.1| excinuclease ABC subunit C [Tropheryma whipplei TW08/27]
          Length = 607

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLD---RQWFML--LQSVQGVGARVAMGVLSRITA-TELV 99
           +LF+   +R +  R   F        R+ ++   L  + G+G +  M +L R ++  E+ 
Sbjct: 520 SLFLLQKIRDESHR---FALKQQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIR 576

Query: 100 ESIILQNSKVIAQIPGISMKIASRI 124
           ++  +++   +   PG  +K A +I
Sbjct: 577 QA-SIEDISAL---PGFGVKTAEKI 597


>gi|28493264|ref|NP_787425.1| excinuclease ABC subunit C [Tropheryma whipplei str. Twist]
 gi|81438052|sp|Q83MY6|UVRC_TROWT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28476305|gb|AAO44394.1| excinuclease ABC subunit C [Tropheryma whipplei str. Twist]
          Length = 607

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLD---RQWFML--LQSVQGVGARVAMGVLSRITA-TELV 99
           +LF+   +R +  R   F        R+ ++   L  + G+G +  M +L R ++  E+ 
Sbjct: 520 SLFLLQKIRDESHR---FALKQQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIR 576

Query: 100 ESIILQNSKVIAQIPGISMKIASRI 124
           ++  +++   +   PG  +K A +I
Sbjct: 577 QA-SIEDISAL---PGFGVKTAEKI 597


>gi|71065354|ref|YP_264081.1| recombination protein RecR [Psychrobacter arcticus 273-4]
 gi|123649110|sp|Q4FTL1|RECR_PSYA2 RecName: Full=Recombination protein recR
 gi|71038339|gb|AAZ18647.1| DNA replication and repair protein RecR [Psychrobacter arcticus
           273-4]
          Length = 197

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            K +  +PG+  K A R+   L  K       + Q +    ++        SF+ +A+
Sbjct: 10  VKQLRILPGVGQKSAQRMALHLLTKKRPQGMALAQALDEAMRDIVECQRCHSFSDDAV 67


>gi|302348186|ref|YP_003815824.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15]
 gi|302328598|gb|ADL18793.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15]
          Length = 252

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
             PGI  K A RI+     K  SL S     ++ +   +    S  +     + A
Sbjct: 173 SFPGIGAKTAERIL----EKFGSLESFFNASLAELASVEGVGESKAARIKELLKA 223


>gi|159035939|ref|YP_001535192.1| RecD/TraA family helicase [Salinispora arenicola CNS-205]
 gi|157914774|gb|ABV96201.1| helicase, RecD/TraA family [Salinispora arenicola CNS-205]
          Length = 742

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK-IA 121
           V+G+G   A  +++      L   II +    + ++PG+  K  A
Sbjct: 101 VKGIGPVFAERIVAHFGLDTLR--IIEEEPGRLVEVPGLGPKRTA 143


>gi|291537812|emb|CBL10923.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif
           [Roseburia intestinalis XB6B4]
          Length = 430

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%)

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L           I   +   + ++PGI  K ASRI+
Sbjct: 320 PKCDWALRHLEYFPVE-----INRADYHTLLRVPGIGAKSASRIV 359


>gi|291537679|emb|CBL10791.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif
           [Roseburia intestinalis M50/1]
          Length = 426

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%)

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L           I   +   + ++PGI  K ASRI+
Sbjct: 316 PKCDWALRHLEYFPVE-----INRADYHTLLRVPGIGAKSASRIV 355


>gi|258591348|emb|CBE67647.1| Transcription elongation protein nusA (N utilization substance
           protein A) (L factor) [NC10 bacterium 'Dutch sediment']
          Length = 433

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           + L  V GVG ++A  ++         +     +   + Q+ GI  K A +++
Sbjct: 370 LRLAEVPGVGEKLADRLIEA-GVDSCRKLADASDE-ALVQVEGIGPKTAQKLI 420


>gi|257413650|ref|ZP_04743697.2| radical SAM domain protein [Roseburia intestinalis L1-82]
 gi|257202768|gb|EEV01053.1| radical SAM domain protein [Roseburia intestinalis L1-82]
          Length = 430

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%)

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L           I   +   + ++PGI  K ASRI+
Sbjct: 320 PKCDWALRHLEYFPVE-----INRADYHTLLRVPGIGAKSASRIV 359


>gi|110803510|ref|YP_699450.1| RecD/TraA family helicase [Clostridium perfringens SM101]
 gi|110684011|gb|ABG87381.1| helicase, RecD/TraA family [Clostridium perfringens SM101]
          Length = 744

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           +QG+G   A  ++++     L   I+  N + + +I GI  K    I+
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133


>gi|225568335|ref|ZP_03777360.1| hypothetical protein CLOHYLEM_04412 [Clostridium hylemonae DSM
           15053]
 gi|225162864|gb|EEG75483.1| hypothetical protein CLOHYLEM_04412 [Clostridium hylemonae DSM
           15053]
          Length = 444

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
            +   A+  L +         I   + K++ ++PGI  K A RI+     KA  L ++  
Sbjct: 317 PKCNWALSHLEQFPVE-----INRADYKMLLRVPGIGYKSAVRIV-----KARRLGTLDF 366

Query: 141 QDMSCVN 147
            D+  + 
Sbjct: 367 HDLKKIG 373


>gi|222100489|ref|YP_002535057.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359]
 gi|221572879|gb|ACM23691.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359]
          Length = 181

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 18/126 (14%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
             L S+ G+G   A  ++          ++       +  + GI  K   +I      K 
Sbjct: 55  EDLMSIPGIGPVKAQRIVEYRRIRGKFSTVEE-----LTNVSGIGEKTLEKI-----SKY 104

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
           +++  V Q   S V K   +  S+          L  L Y  +    A++   ++    +
Sbjct: 105 VTVEGVEQPFRSEVTKLNVNTASLEE--------LETLPYIGEAKARAIIEYREEHGPFS 156

Query: 193 DDSQII 198
               ++
Sbjct: 157 SPEDLL 162


>gi|168215804|ref|ZP_02641429.1| helicase, RecD/TraA family [Clostridium perfringens NCTC 8239]
 gi|182382061|gb|EDT79540.1| helicase, RecD/TraA family [Clostridium perfringens NCTC 8239]
          Length = 744

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           +QG+G   A  ++++     L   I+  N + + +I GI  K    I+
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133


>gi|169344241|ref|ZP_02865223.1| helicase, RecD/TraA family [Clostridium perfringens C str. JGS1495]
 gi|169297700|gb|EDS79800.1| helicase, RecD/TraA family [Clostridium perfringens C str. JGS1495]
          Length = 744

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           +QG+G   A  ++++     L   I+  N + + +I GI  K    I+
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133


>gi|165933332|ref|YP_001650121.1| 30S ribosomal protein S1 [Rickettsia rickettsii str. Iowa]
 gi|165908419|gb|ABY72715.1| SSU ribosomal protein S1P [Rickettsia rickettsii str. Iowa]
          Length = 568

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D +++DV     G       P      L ++GD   +F+ET   ++ 
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIETIEGRNG 93


>gi|218886499|ref|YP_002435820.1| helicase, RecD/TraA family [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218757453|gb|ACL08352.1| helicase, RecD/TraA family [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 728

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++GVG  +A  ++           ++ +    + ++ G+  K   RI
Sbjct: 97  IKGVGESMAARIVDAFGEDTFR--VLDEEPDRLLRVSGVGGKTLERI 141


>gi|297199818|ref|ZP_06917215.1| exodeoxyribonuclease V, alpha subunit [Streptomyces sviceus ATCC
           29083]
 gi|197710282|gb|EDY54316.1| exodeoxyribonuclease V, alpha subunit [Streptomyces sviceus ATCC
           29083]
          Length = 750

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  +        L   II +  K + ++PG+  K   +I
Sbjct: 104 VKGIGPVFADRITQHFGIDTLK--IIEEEPKRLVEVPGLGPKRTKKI 148


>gi|125975668|ref|YP_001039578.1| RecD/TraA family helicase [Clostridium thermocellum ATCC 27405]
 gi|125715893|gb|ABN54385.1| helicase, RecD/TraA family [Clostridium thermocellum ATCC 27405]
          Length = 710

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++G+G   A  ++       +   +I +    + ++PGI  K    I
Sbjct: 87  IKGIGPVNAKRIVKVFKEDTIR--VIEEEPDRLIEVPGIGKKRVEMI 131


>gi|18311157|ref|NP_563091.1| helicase, RecD/TraA family [Clostridium perfringens str. 13]
 gi|168213721|ref|ZP_02639346.1| helicase, RecD/TraA family [Clostridium perfringens CPE str. F4969]
 gi|182623921|ref|ZP_02951709.1| helicase, RecD/TraA family [Clostridium perfringens D str. JGS1721]
 gi|18145840|dbj|BAB81881.1| exodeoxyribonuclease V alpha subunit [Clostridium perfringens str.
           13]
 gi|170714837|gb|EDT27019.1| helicase, RecD/TraA family [Clostridium perfringens CPE str. F4969]
 gi|177910814|gb|EDT73168.1| helicase, RecD/TraA family [Clostridium perfringens D str. JGS1721]
          Length = 744

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           +QG+G   A  ++++     L   I+  N + + +I GI  K    I+
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133


>gi|302343283|ref|YP_003807812.1| helicase, RecD/TraA family [Desulfarculus baarsii DSM 2075]
 gi|301639896|gb|ADK85218.1| helicase, RecD/TraA family [Desulfarculus baarsii DSM 2075]
          Length = 720

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+GVG  +A  ++  +    + + +   + + +  +PG+  K A+ I
Sbjct: 95  VKGVGPVMAGRIVDVLGEGAIEKIV--NDPRSLTAVPGVGAKRAASI 139


>gi|33240404|ref|NP_875346.1| excinuclease ABC subunit C [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|81664511|sp|Q7VBY8|UVRC_PROMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|33237931|gb|AAP99998.1| Nuclease subunit of the excinuclease complex [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 640

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            L  + G+G +    +L    +   V++I +   + IA  PG+  ++A  I
Sbjct: 587 ELTEIPGIGPKRIKALLLHFNS---VQAIKMARKEEIASAPGVGRELAEHI 634


>gi|168205588|ref|ZP_02631593.1| helicase, RecD/TraA family [Clostridium perfringens E str. JGS1987]
 gi|170662877|gb|EDT15560.1| helicase, RecD/TraA family [Clostridium perfringens E str. JGS1987]
          Length = 744

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           +QG+G   A  ++++     L   I+  N + + +I GI  K    I+
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133


>gi|110597593|ref|ZP_01385878.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM
           13031]
 gi|110340713|gb|EAT59190.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM
           13031]
          Length = 375

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 68  DRQWFML-LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++   +L L  + G+G      +++ +    +++++    + + +  IPGI   +A +I
Sbjct: 2   EKSMLLLALTLIPGIGPSRIKALINHLPDINDVLQA----DVEALKTIPGIGEPLARQI 56


>gi|110800894|ref|YP_696854.1| RecD/TraA family helicase [Clostridium perfringens ATCC 13124]
 gi|168210105|ref|ZP_02635730.1| helicase, RecD/TraA family [Clostridium perfringens B str. ATCC
           3626]
 gi|110675541|gb|ABG84528.1| helicase, RecD/TraA family [Clostridium perfringens ATCC 13124]
 gi|170711774|gb|EDT23956.1| helicase, RecD/TraA family [Clostridium perfringens B str. ATCC
           3626]
          Length = 744

 Score = 38.5 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           +QG+G   A  ++++     L   I+  N + + +I GI  K    I+
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133


>gi|89890633|ref|ZP_01202143.1| recombination DNA repair protein RecR [Flavobacteria bacterium
           BBFL7]
 gi|89517548|gb|EAS20205.1| recombination DNA repair protein RecR [Flavobacteria bacterium
           BBFL7]
          Length = 205

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 26/70 (37%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161
           I+ +    ++Q+PGI  + A R++  L                            P+   
Sbjct: 7   ILEEAVNQVSQLPGIGKRTALRLVLHL-------------------------MRQPASQT 41

Query: 162 NAIS-ALVNL 170
           +A+S AL NL
Sbjct: 42  DALSQALTNL 51


>gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 752

 Score = 38.5 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  ++Q F+  +S+ G+G   A  +L        V++I+  +   +  + GI  K A+ I
Sbjct: 687 TLPEQQLFIT-ESLPGIGPVSAKNLLRHFKN---VKNIVNASKNELKDVEGIGEKTATNI 742

Query: 125 M 125
           +
Sbjct: 743 I 743


>gi|320352593|ref|YP_004193932.1| helicase, RecD/TraA family [Desulfobulbus propionicus DSM 2032]
 gi|320121095|gb|ADW16641.1| helicase, RecD/TraA family [Desulfobulbus propionicus DSM 2032]
          Length = 832

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++GVG + A  +++      L  ++     + + ++PGI+ K    I
Sbjct: 103 IKGVGPKTAKRIVAHFGEQTL--AVFEGEKERLLEVPGIARKKLEMI 147


>gi|307323442|ref|ZP_07602652.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306890931|gb|EFN21907.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 345

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 84  RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE-LKGKAIS 134
           R A  VL+ +   E+           +  + G+  K A  ++ E LKG+   
Sbjct: 28  RTAQAVLAGLDPQEVERRAANG---TLRSLKGLGPKTAQ-VVQEALKGQVPG 75


>gi|288572814|ref|ZP_06391171.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568555|gb|EFC90112.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 229

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
             L+++ G+G + A  +LS         S+       + ++ GI  K
Sbjct: 176 EELETLPGIGPKTAAAILSYREKIGPFRSVDE-----LTKVKGIGPK 217


>gi|289522266|ref|ZP_06439120.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504102|gb|EFD25266.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 390

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 13/106 (12%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQG-V 81
           V Y  Y P+     L  + +   L     +     IR +GF  +     F   +++   +
Sbjct: 236 VYYSAYIPVNP-GVLPDVTNPPLLREHRLYQADWLIRFYGFKVE---DIFQGTENLSNEM 291

Query: 82  GARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             ++  A+  +           I     + +  +PGI  K A +I+
Sbjct: 292 DPKMLWALRNMHLFPVD-----IKRAPYESLILVPGIGPKTAKKII 332


>gi|262198238|ref|YP_003269447.1| excinuclease ABC, C subunit [Haliangium ochraceum DSM 14365]
 gi|262081585|gb|ACY17554.1| excinuclease ABC, C subunit [Haliangium ochraceum DSM 14365]
          Length = 689

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 43  DFCTLFVETHMRQDQIRLFGFLSD--LDRQ----WFMLLQSVQGVGARVAMGVLSRITAT 96
           +   L++ + +R +  R   F +    +R+        L  + G+GA+    +L  + + 
Sbjct: 559 NTAELYLLSRVRDEAHR---FANTFHRERRNRTALRSSLDDIPGIGAKRRRALLRELGS- 614

Query: 97  ELVESIILQNSKVIAQIPGISMKIAS 122
             +++I   + + ++ + G+  K A 
Sbjct: 615 --LKAIKQASLEELSAVSGMGRKAAE 638


>gi|93005630|ref|YP_580067.1| recombination protein RecR [Psychrobacter cryohalolentis K5]
 gi|122415701|sp|Q1QCM0|RECR_PSYCK RecName: Full=Recombination protein recR
 gi|92393308|gb|ABE74583.1| DNA replication and repair protein RecR [Psychrobacter
           cryohalolentis K5]
          Length = 197

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            K +  +PG+  K A R+   L  K       + Q +    ++        SF+  A+
Sbjct: 10  VKQLRILPGVGQKSAQRMALHLLTKKRPQGMALAQALDEAMRDIVECQRCHSFSDEAV 67


>gi|297205884|ref|ZP_06923279.1| S1 RNA binding domain protein [Lactobacillus jensenii JV-V16]
 gi|297149010|gb|EFH29308.1| S1 RNA binding domain protein [Lactobacillus jensenii JV-V16]
          Length = 292

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  MIGKI-KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50
          M+G I KG +    ++   + V GV Y +     T   + ++GD    F+ 
Sbjct: 1  MLGTIQKGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIY 51


>gi|194333502|ref|YP_002015362.1| helicase, RecD/TraA family [Prosthecochloris aestuarii DSM 271]
 gi|194311320|gb|ACF45715.1| helicase, RecD/TraA family [Prosthecochloris aestuarii DSM 271]
          Length = 728

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 18/141 (12%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V+G+G+  A  ++        V S+I ++ + + ++PGI  K   +++ E   +  ++  
Sbjct: 99  VRGIGSHFARTLVRAFGPE--VFSVIEKDPERMLELPGIGKKR-MQMVVEAWDEQKAVRD 155

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISA-------LV----NLGYGQDQATTAVVSVLK 186
           ++    S        +    ++   AI         LV     +G+    A   + S L 
Sbjct: 156 IMVFLQSHGVGTARAVRIYKTYGDQAIQIVSRNPYRLVLDIQGIGFRTADA---IASTLG 212

Query: 187 KEKNIADDSQI-IRLALRAIS 206
            E N    +Q  IR  L  +S
Sbjct: 213 IEPNSLVRAQAGIRHVLVELS 233


>gi|315146726|gb|EFT90742.1| comEA protein [Enterococcus faecalis TX4244]
          Length = 225

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  + GI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 217


>gi|37523068|ref|NP_926445.1| recombination protein [Gloeobacter violaceus PCC 7421]
 gi|73621488|sp|Q7NFM5|RECR_GLOVI RecName: Full=Recombination protein recR
 gi|35214071|dbj|BAC91440.1| recombination protein [Gloeobacter violaceus PCC 7421]
          Length = 197

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
            + + ++PGI  K A R+   L  +  S +  + Q +    ++
Sbjct: 10  IEHLQRLPGIGPKTAQRLAFHLLRRPKSEALQLAQALVEATEQ 52


>gi|62185098|ref|YP_219883.1| recombination protein RecR [Chlamydophila abortus S26/3]
 gi|73621477|sp|Q5L609|RECR_CHLAB RecName: Full=Recombination protein recR
 gi|62148165|emb|CAH63922.1| recombination protein [Chlamydophila abortus S26/3]
          Length = 200

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSC 145
             ++ ++PGI  K A ++  EL    K +  S+     +  + 
Sbjct: 12  ISLLRKLPGIGFKTAEKLAFELLDWDKDQLESMGKAFSELSAA 54


>gi|282857765|ref|ZP_06266974.1| excinuclease ABC, C subunit [Pyramidobacter piscolens W5455]
 gi|282584435|gb|EFB89794.1| excinuclease ABC, C subunit [Pyramidobacter piscolens W5455]
          Length = 575

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L+ V G+G   A  +LS   + + + ++  +    + + PGI    A++I+  L      
Sbjct: 432 LEDVPGIGKHKAALLLSTFGSVQRIAALSAEE---LQKAPGIGPVQAAKILGFLTETPEP 488

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFA 160
            +   ++ +  V  E+      P  A
Sbjct: 489 EAPETKKTVELVRAERPPQAVAPETA 514


>gi|269926190|ref|YP_003322813.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789850|gb|ACZ41991.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 584

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             L  V  +G +    +   L   +   L  +I       I ++ G+  K   RI+  LK
Sbjct: 102 RELLQVPDLGPKRVKLLWGELKVGSLDALELAIEDG---RIYKVKGLGPKAIERIIEGLK 158


>gi|26990793|ref|NP_746218.1| excinuclease ABC subunit C [Pseudomonas putida KT2440]
 gi|32130289|sp|Q88FJ7|UVRC_PSEPK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|24985797|gb|AAN69682.1|AE016604_4 excinuclease ABC, C subunit [Pseudomonas putida KT2440]
          Length = 607

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94
           GD   L +   +R +  R   F        R     + S   V GVG +    +L     
Sbjct: 518 GDSSALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 574

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRI 124
             EL  + I +    IA+ PGIS K+A  I
Sbjct: 575 LQELNRASIDE----IAKAPGISKKLAESI 600


>gi|194333788|ref|YP_002015648.1| PHP domain-containing protein [Prosthecochloris aestuarii DSM 271]
 gi|194311606|gb|ACF46001.1| PHP domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 574

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 13/138 (9%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQSVQGVGARVAMGVLS 91
           L+ L  IG   +  +   +    +R   FL  L++     F  L  + G+G R    +  
Sbjct: 56  LTRLPGIGRDLSKKILEIVETGHLR---FLDTLEKNAHASFSELMEIPGLGPRKVKALYD 112

Query: 92  RIT---ATELVESIILQNSKVIAQIPGISMKIASRIMTEL-KGKAISLSSVVQQDMSCVN 147
            +      EL E+       ++A   G   K    I+ E+ + K  S     Q  M    
Sbjct: 113 ALDIRNIEELEEAAEQGRIALVA---GFGKKSQQNILKEIVRRKERSRRITYQAAMFAAE 169

Query: 148 KEQAHICSMPSFAINAIS 165
              +++ +       AI+
Sbjct: 170 PLLSYLRACDDITQVAIA 187


>gi|28493351|ref|NP_787512.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist]
 gi|28572539|ref|NP_789319.1| DNA uptake protein [Tropheryma whipplei TW08/27]
 gi|28410671|emb|CAD67057.1| putative DNA uptake protein [Tropheryma whipplei TW08/27]
 gi|28476392|gb|AAO44481.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist]
          Length = 193

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
           I   +++ +  I GI    A RI+ + + K    
Sbjct: 135 INTADAQRLQSIKGIGKATAKRII-DWRNKHGPF 167


>gi|257419902|ref|ZP_05596896.1| competence protein comEA [Enterococcus faecalis T11]
 gi|257161730|gb|EEU91690.1| competence protein comEA [Enterococcus faecalis T11]
          Length = 225

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  + GI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 217


>gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
 gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
          Length = 662

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149
           +I       +        IP + +K A  ++      E   KA     V  QD+  +   
Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554

Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177
                      +  I+ L++LG    Y + + 
Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586


>gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13]
 gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13]
          Length = 665

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 395 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 446

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 447 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 497

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149
           +I       +        IP + +K A  ++      E   KA     V  QD+  +   
Sbjct: 498 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 557

Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177
                      +  I+ L++LG    Y + + 
Sbjct: 558 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 589


>gi|329942834|ref|ZP_08291613.1| recombination protein RecR [Chlamydophila psittaci Cal10]
 gi|332287427|ref|YP_004422328.1| recombination protein RecR [Chlamydophila psittaci 6BC]
 gi|313848007|emb|CBY17004.1| recombination protein [Chlamydophila psittaci RD1]
 gi|325506466|gb|ADZ18104.1| recombination protein RecR [Chlamydophila psittaci 6BC]
 gi|328815094|gb|EGF85083.1| recombination protein RecR [Chlamydophila psittaci Cal10]
 gi|328914675|gb|AEB55508.1| recombination protein RecR [Chlamydophila psittaci 6BC]
          Length = 200

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSC 145
              + ++PGI  K A ++  EL    K +  S+     +  + 
Sbjct: 12  ISFLRKLPGIGFKTAEKLAFELLDWDKDQLESMGKAFSELSAA 54


>gi|300867805|ref|ZP_07112448.1| recombination protein RecR [Oscillatoria sp. PCC 6506]
 gi|300334222|emb|CBN57620.1| recombination protein RecR [Oscillatoria sp. PCC 6506]
          Length = 197

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PGI  K A R+  
Sbjct: 10  IEQLQRLPGIGPKTAQRLAL 29


>gi|295103457|emb|CBL01001.1| Excinuclease ABC subunit C [Faecalibacterium prausnitzii SL3/3]
          Length = 617

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
              ++D  G    I     T + +  I D    F   + +Q             + +   
Sbjct: 512 TRAIVDSDGREIAINMNRGTFTFITAIQDETHRFANAYRKQ---------QMKQKSYSST 562

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  V GVG + A  +L++  +   V ++       +   PG+  ++A  I
Sbjct: 563 LTEVPGVGPKTAKALLTQFKS---VGAVKDATPDQLENTPGVGRQLAQTI 609


>gi|292492317|ref|YP_003527756.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4]
 gi|291580912|gb|ADE15369.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4]
          Length = 236

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           LLQ + G+G   A  +L+   +   VE+++  + + +  +PGI  ++A
Sbjct: 170 LLQGLPGIGPERARQLLAHFGS---VEAVLNAHLEELMTVPGIGKEVA 214


>gi|254514446|ref|ZP_05126507.1| excinuclease ABC, C subunit [gamma proteobacterium NOR5-3]
 gi|219676689|gb|EED33054.1| excinuclease ABC, C subunit [gamma proteobacterium NOR5-3]
          Length = 615

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 24/122 (19%)

Query: 19  IDVQGV--------CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL------ 64
           I+V GV         +       +   L    D   L +   +R +  R   F       
Sbjct: 493 IEVVGVAKGTTRKAGFETLILGDSGRELQLPSDNPALHLIQQIRDEAHR---FAITGHRN 549

Query: 65  --SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
                 RQ    L+S+ GVGA+    +L    +     ++   + + + +IPGIS  IA 
Sbjct: 550 RRDKQRRQ--SSLESIAGVGAKRRRELLRHFGSAG---AVENASVEELRKIPGISANIAQ 604

Query: 123 RI 124
            I
Sbjct: 605 TI 606


>gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 662

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149
           +I       +        IP + +K A  ++      E   KA     V  QD+  +   
Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554

Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177
                      +  I+ L++LG    Y + + 
Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586


>gi|148378173|ref|YP_001252714.1| helicase, RecD/TraA family [Clostridium botulinum A str. ATCC 3502]
 gi|153932456|ref|YP_001382573.1| RecD/TraA family helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153936042|ref|YP_001386126.1| RecD/TraA family helicase [Clostridium botulinum A str. Hall]
 gi|148287657|emb|CAL81722.1| putative DNA-interacting protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928500|gb|ABS34000.1| helicase, RecD/TraA family [Clostridium botulinum A str. ATCC
           19397]
 gi|152931956|gb|ABS37455.1| helicase, RecD/TraA family [Clostridium botulinum A str. Hall]
          Length = 744

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           + G+G   A  ++ +     L   I+  N + + +I GI  K   
Sbjct: 88  ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIE 130


>gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124]
 gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124]
          Length = 662

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149
           +I       +        IP + +K A  ++      E   KA     V  QD+  +   
Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554

Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177
                      +  I+ L++LG    Y + + 
Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586


>gi|148547004|ref|YP_001267106.1| excinuclease ABC subunit C [Pseudomonas putida F1]
 gi|189038076|sp|A5W1B2|UVRC_PSEP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|148511062|gb|ABQ77922.1| Excinuclease ABC subunit C [Pseudomonas putida F1]
          Length = 607

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94
           GD   L +   +R +  R   F        R     + S   V GVG +    +L     
Sbjct: 518 GDSSALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 574

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRI 124
             EL  + I +    IA+ PGIS K+A  I
Sbjct: 575 LQELNRASIDE----IAKAPGISKKLAESI 600


>gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065]
          Length = 664

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 27/172 (15%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            GV Y  YC   TLSC  ++       V    R+  + + GF      Q F  L  ++ +
Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468

Query: 82  G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127
               ++    L  +       +  L+++I      +         IP +  K A+ ++ +
Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQ 174
            K      ++ ++Q +   +  +    S+  F  +      I  L+NLG   
Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKP 580


>gi|313498052|gb|ADR59418.1| UvrC [Pseudomonas putida BIRD-1]
          Length = 607

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94
           GD   L +   +R +  R   F        R     + S   V GVG +    +L     
Sbjct: 518 GDSSALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 574

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRI 124
             EL  + I +    IA+ PGIS K+A  I
Sbjct: 575 LQELNRASIDE----IAKAPGISKKLAESI 600


>gi|104782488|ref|YP_608986.1| excinuclease ABC subunit C [Pseudomonas entomophila L48]
 gi|122402746|sp|Q1I833|UVRC_PSEE4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|95111475|emb|CAK16195.1| excinuclease ABC subunit C [Pseudomonas entomophila L48]
          Length = 607

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+ V GVG +    +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 554 LEDVAGVGPKRRRDLLKHFGGLQELNRASIDE----IAKAPGISKKLAESI 600


>gi|239979547|ref|ZP_04702071.1| putative exodeoxyribonuclease V [Streptomyces albus J1074]
 gi|291451415|ref|ZP_06590805.1| exodeoxyribonuclease V [Streptomyces albus J1074]
 gi|291354364|gb|EFE81266.1| exodeoxyribonuclease V [Streptomyces albus J1074]
          Length = 752

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G R+A  +        L   +I  ++K + ++PG+  K
Sbjct: 103 IKGIGPRIADRITEHFGVDTLD--VIETDAKRLVEVPGLGPK 142


>gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
 gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
          Length = 664

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 27/172 (15%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            GV Y  YC   TLSC  ++       V    R+  + + GF      Q F  L  ++ +
Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468

Query: 82  G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127
               ++    L  +       +  L+++I      +         IP +  K A+ ++ +
Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQ 174
            K      ++ ++Q +   +  +    S+  F  +      I  L+NLG   
Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKP 580


>gi|218135320|ref|ZP_03464124.1| hypothetical protein BACPEC_03225 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990705|gb|EEC56716.1| hypothetical protein BACPEC_03225 [Bacteroides pectinophilus ATCC
           43243]
          Length = 757

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 66  DLDRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           + ++     L S  ++G+G + A  +++   A      II +  + +A+I GISMK A
Sbjct: 94  EDEKAVLKYLGSGAIRGIGEKTAQNIVNYFGADTFR--IIEEEPERLAEIKGISMKKA 149


>gi|323706335|ref|ZP_08117900.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534297|gb|EGB24083.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 424

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 19/110 (17%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGF-----LSDLDRQWFMLLQS 77
           V Y  Y P+   S + K+     L     +     +R + F     L++ +  +      
Sbjct: 250 VYYSAYIPVSDDSNISKVTSPPLLREHRLYQADWLLRYYNFKADELLTEEEPNF-----D 304

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           V  +  ++  AM  L+          +   +  ++ ++PGI ++ A RI+
Sbjct: 305 VS-LDPKINWAMKNLNLFPVE-----VNTADYNMLLRVPGIGVRTAKRIV 348


>gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
 gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
          Length = 662

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149
           +I       +        IP + +K A  ++      E   KA     V  QD+  +   
Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554

Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177
                      +  I+ L++LG    Y + + 
Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586


>gi|51891153|ref|YP_073844.1| recombination protein RecR [Symbiobacterium thermophilum IAM 14863]
 gi|73621522|sp|Q67TJ3|RECR_SYMTH RecName: Full=Recombination protein recR
 gi|51854842|dbj|BAD39000.1| recombination protein [Symbiobacterium thermophilum IAM 14863]
          Length = 198

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + + ++PGI  K A R+
Sbjct: 11  IEELTKLPGIGPKTAQRL 28


>gi|319941052|ref|ZP_08015388.1| UvrABC system protein C [Sutterella wadsworthensis 3_1_45B]
 gi|319805409|gb|EFW02211.1| UvrABC system protein C [Sutterella wadsworthensis 3_1_45B]
          Length = 686

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ + GVG +    +L       +L  +   ++     Q+PGIS K+A +I
Sbjct: 615 KLEDLSGVGPKRRAKLLGHFGGMKQLKNA-SAEDIA---QVPGISRKLAEQI 662


>gi|157373515|ref|YP_001472115.1| ERCC4 domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157315889|gb|ABV34987.1| ERCC4 domain protein [Shewanella sediminis HAW-EB3]
          Length = 212

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 29  YCP-IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL--SDLDRQWFMLLQSVQGVGARV 85
             P +R+LS             + + R+  ++L G       +RQ F+ LQS+  VG R+
Sbjct: 112 NIPILRSLSQYESAKILYFCATQLNSRETGLKLNGRKPKRRKNRQLFI-LQSLPEVGPRL 170

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           A  +L    +   VE++I  ++  + ++ GI  + A +I
Sbjct: 171 ARRLLKHFDS---VEAVITASTDELIKVEGIGQERARKI 206


>gi|307277117|ref|ZP_07558221.1| comEA protein [Enterococcus faecalis TX2134]
 gi|306506047|gb|EFM75213.1| comEA protein [Enterococcus faecalis TX2134]
          Length = 225

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  + GI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 217


>gi|294055836|ref|YP_003549494.1| excinuclease ABC C subunit domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615169|gb|ADE55324.1| excinuclease ABC C subunit domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 490

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L   +G+G    M +L    +  +L ++    +++ I Q+ GI  K A  ++
Sbjct: 437 LDDFKGLGPTKRMALLKHFGSLDKLRKA----DAEAITQVEGIGPKTAKGLV 484


>gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
 gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
          Length = 664

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 34/212 (16%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            GV Y  YC   TLSC  ++       V    R+  + + GF      Q F  L  ++ +
Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468

Query: 82  G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127
               ++    L  +       +  L+++I      +         IP +  K A+ ++ +
Sbjct: 469 ADLYKIKKEELLTLDKFGDKKSQNLIDAIENSKNCDLPSFIYALGIPNVGKKTANDLVMK 528

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182
            K      S+ +++ +   +  +    S+  F  +      I  L+NLG         + 
Sbjct: 529 FKTLENIESATIEELVEVPDVGEIVAKSVYDFFKDEKIINNIEELLNLGVKPYYEEEIID 588

Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207
                 K I     +       I+  L+++  
Sbjct: 589 ENPFMGKTIVVTGSLNNYSRGEIKDKLQSLGA 620


>gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
 gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
          Length = 662

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149
           +I       +        IP + +K A  ++      E   KA     V  QD+  +   
Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554

Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177
                      +  I+ L++LG    Y + + 
Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586


>gi|218437593|ref|YP_002375922.1| recombination protein RecR [Cyanothece sp. PCC 7424]
 gi|259563689|sp|B7KEM9|RECR_CYAP7 RecName: Full=Recombination protein recR
 gi|218170321|gb|ACK69054.1| recombination protein RecR [Cyanothece sp. PCC 7424]
          Length = 199

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 10  IEQLQRLPGVGPKTAQRLAL 29


>gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
 gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
          Length = 662

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149
           +I       +        IP + +K A  ++      E   KA     V  QD+  +   
Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554

Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177
                      +  I+ L++LG    Y + + 
Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586


>gi|170722539|ref|YP_001750227.1| excinuclease ABC subunit C [Pseudomonas putida W619]
 gi|229557935|sp|B1JB85|UVRC_PSEPW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169760542|gb|ACA73858.1| excinuclease ABC, C subunit [Pseudomonas putida W619]
          Length = 607

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+ V GVG +    +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 554 LEDVAGVGPKRRRDLLKHFGGLQELNRASIDE----IAKAPGISKKLAESI 600


>gi|53804040|ref|YP_114124.1| excinuclease ABC subunit C [Methylococcus capsulatus str. Bath]
 gi|53757801|gb|AAU92092.1| excinuclease ABC, C subunit [Methylococcus capsulatus str. Bath]
          Length = 626

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 49/160 (30%)

Query: 4   KIK-GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG---------------KIGDFCTL 47
           +I+ G +E    D + ID  G    I+   RTL+ LG               K G     
Sbjct: 468 RIRAGEVEA--PDILFID-GGKG-QIHAAARTLAELGVENIRIIGIAKGPDRKPGMETLF 523

Query: 48  FV-----------------ETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQGVGAR 84
                                H+R +  R   F     RQ          LQ++ G+G +
Sbjct: 524 QTGCSDPIVVKPDNPGSLLIQHIRDEAHR---FAITGHRQRRAKTVTRSPLQAIAGLGPK 580

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
               +L +     L + I   + + ++ + GI+ ++A RI
Sbjct: 581 RRQRLLRQFG--GLRQ-ISRADVEALSSVEGINRQLAQRI 617


>gi|86133950|ref|ZP_01052532.1| recombination protein RecR [Polaribacter sp. MED152]
 gi|85820813|gb|EAQ41960.1| recombination protein RecR [Polaribacter sp. MED152]
          Length = 205

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           +    I+      ++++PGI  + A R++  L
Sbjct: 2   DFSSKILENAVNEVSRLPGIGKRTALRLVLHL 33


>gi|78485489|ref|YP_391414.1| excinuclease ABC, C subunit [Thiomicrospira crunogena XCL-2]
 gi|119367857|sp|Q31GI3|UVRC_THICR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78363775|gb|ABB41740.1| Excinuclease ABC subunit C [Thiomicrospira crunogena XCL-2]
          Length = 613

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL-----SDLDR-QWFMLLQSV 78
              I         +    D   L +  ++R +  R   F      S   + Q    L+ +
Sbjct: 506 GLEILYTPFNEEGIDLEADDIALHLLNYIRDEAHR---FAITSHRSRRQKAQTHSRLEDI 562

Query: 79  QGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            GVGA+    +L+     TE+  + + +    + ++PGIS +IA  I
Sbjct: 563 PGVGAKTRHKLLTHFGGLTEVKNAAVSE----LQKVPGISARIAQTI 605


>gi|88855053|ref|ZP_01129718.1| Competence protein ComEA helix-hairpin-helix region [marine
           actinobacterium PHSC20C1]
 gi|88815581|gb|EAR25438.1| Competence protein ComEA helix-hairpin-helix region [marine
           actinobacterium PHSC20C1]
          Length = 196

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 62  GF---LSDLDRQWFMLLQ-----SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           GF    +  +     LL      SV  VGA+ A   +S          +   ++  +  +
Sbjct: 95  GFTESANHDELNLARLLTDGEQFSVPEVGAKSAEAAVSDSRVN-----LNTADAAALDTL 149

Query: 114 PGISMKIASRIM 125
           P I   +A RI+
Sbjct: 150 PRIGPAMAKRIL 161


>gi|295695298|ref|YP_003588536.1| excinuclease ABC, C subunit [Bacillus tusciae DSM 2912]
 gi|295410900|gb|ADG05392.1| excinuclease ABC, C subunit [Bacillus tusciae DSM 2912]
          Length = 591

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
              L +I +    F  T  RQ         +   R    +L  + G+G +    +L    
Sbjct: 510 FYLLQRIQEEVHRFAITFHRQ---------TRGKRVMHSVLDDIPGIGEKRKRKLLQHFG 560

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           +   VE+I   + +   Q  GI  ++A +I+  LK
Sbjct: 561 S---VEAIRQASLEEFRQA-GIGDRLAEQILEALK 591


>gi|78187321|ref|YP_375364.1| helicase RecD/TraA [Chlorobium luteolum DSM 273]
 gi|78167223|gb|ABB24321.1| Helicase RecD/TraA [Chlorobium luteolum DSM 273]
          Length = 739

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           +R     +    GVG  +A  ++S          II  + + +  IPGI  K    ++ E
Sbjct: 102 ERYLASGMLK--GVGPHLASLMMSAWGTDVFQ--IIETDPERLRDIPGIGPKK-QALIVE 156


>gi|310658920|ref|YP_003936641.1| radical sam domain-containing protein [Clostridium sticklandii DSM
           519]
 gi|308825698|emb|CBH21736.1| Radical SAM domain protein [Clostridium sticklandii]
          Length = 428

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 20/110 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQ--- 79
           V Y  Y P+   + L  I +   L     +     +R + F +         L SV    
Sbjct: 249 VYYSSYIPVNEDTLLPAIPEPTFLREHRLYQADWLLRFYDFKASE-------LLSVNQNF 301

Query: 80  --GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
              +  +   A+  ++          I   + K++ ++PGI ++ A RI+
Sbjct: 302 NLALDPKANYALNNMNLFPVN-----IQTASYKLLLRVPGIGVRSAKRIV 346


>gi|295102428|emb|CBK99973.1| Excinuclease ABC subunit C [Faecalibacterium prausnitzii L2-6]
          Length = 617

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            L  V GVG + A  ++++  +   V ++       +   PG+  ++A  I
Sbjct: 562 TLTEVPGVGPKTAKALMTQFKS---VGAVKEATPDQLENTPGVGRQMAQTI 609


>gi|295839538|ref|ZP_06826471.1| excinuclease ABC subunit C [Streptomyces sp. SPB74]
 gi|197696882|gb|EDY43815.1| excinuclease ABC subunit C [Streptomyces sp. SPB74]
          Length = 818

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L ++ D    F  T+ R          S   ++ F    L  V G+G      +L  
Sbjct: 527 LYLLQRVRDEAHRFAITYQR----------SKRAKR-FRAGPLDEVPGLGQSRKQALLKH 575

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +  +L  + I Q    I ++PGI  K A  I+
Sbjct: 576 FGSVKKLRAATIEQ----ICEVPGIGRKTAETIL 605


>gi|167034667|ref|YP_001669898.1| excinuclease ABC subunit C [Pseudomonas putida GB-1]
 gi|166861155|gb|ABY99562.1| excinuclease ABC, C subunit [Pseudomonas putida GB-1]
          Length = 585

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94
           GD   L +   +R +  R   F        R     + S   V GVG +    +L     
Sbjct: 496 GDSSALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 552

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRI 124
             EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 LQELNRASIDE----IAKAPGISKKLAESI 578


>gi|218533192|ref|YP_002424008.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4]
 gi|218525495|gb|ACK86080.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4]
          Length = 750

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G+G  +A  +++    +     II      + ++ GI  K A RI+
Sbjct: 111 GIGPAMAKRIVALFGESTFE--IIEAEPDRLMEVGGIGPKRAERIV 154


>gi|328951740|ref|YP_004369075.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Marinithermus hydrothermalis DSM 14884]
 gi|328452064|gb|AEB12965.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Marinithermus hydrothermalis DSM 14884]
          Length = 163

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           R     L+++ G+G   A  ++      E    + +++   + ++PGI  K   R+
Sbjct: 111 RATLEELEALPGIGPTKARRIM------EYRPYLRVED---LLRVPGIGEKTLERL 157


>gi|126661189|ref|ZP_01732265.1| Helicase RecD/TraA [Cyanothece sp. CCY0110]
 gi|126617525|gb|EAZ88318.1| Helicase RecD/TraA [Cyanothece sp. CCY0110]
          Length = 745

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++GVG   A  +++      L   II    + + ++PGI  K
Sbjct: 103 IRGVGPVTAKRIVAYFQLDTLE--IIENQIERLVEVPGIGKK 142


>gi|312962438|ref|ZP_07776929.1| Recombination protein recR [Pseudomonas fluorescens WH6]
 gi|311283365|gb|EFQ61955.1| Recombination protein recR [Pseudomonas fluorescens WH6]
          Length = 206

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           +S ++       I  Q    +  +PG+  K A R+  +L  +  S  + + Q +S   + 
Sbjct: 1   MSDLSPMSFSPLI-RQLIDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMEG 59

Query: 150 QAHICSMPSFAIN 162
             H     +    
Sbjct: 60  VGHCRQCRTLTEE 72


>gi|307271557|ref|ZP_07552829.1| comEA protein [Enterococcus faecalis TX0855]
 gi|306511829|gb|EFM80827.1| comEA protein [Enterococcus faecalis TX0855]
 gi|315035753|gb|EFT47685.1| comEA protein [Enterococcus faecalis TX0027]
          Length = 225

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  + GI  K   R+
Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 217


>gi|332980767|ref|YP_004462208.1| DNA replication and repair protein RecR [Mahella australiensis 50-1
           BON]
 gi|332698445|gb|AEE95386.1| DNA replication and repair protein RecR [Mahella australiensis 50-1
           BON]
          Length = 199

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
              ++++PGI  K A R+
Sbjct: 12  INELSKLPGIGPKTAQRL 29


>gi|256616994|ref|ZP_05473840.1| competence protein CelA [Enterococcus faecalis ATCC 4200]
 gi|256596521|gb|EEU15697.1| competence protein CelA [Enterococcus faecalis ATCC 4200]
          Length = 214

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  + GI  K   R+
Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 206


>gi|313884718|ref|ZP_07818474.1| comEA protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620086|gb|EFR31519.1| comEA protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 241

 Score = 38.1 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIIL-QNSKVIAQIPGISMKIASRIM 125
           LLQ++  +G + A  +++        + I   Q+ + + Q+PGI  K    ++
Sbjct: 190 LLQTLPNIGPKKAEAIINY------RQEIGSFQSVEELIQVPGIGKKTLEGLI 236


>gi|269215626|ref|ZP_06159480.1| competence protein [Slackia exigua ATCC 700122]
 gi|269131113|gb|EEZ62188.1| competence protein [Slackia exigua ATCC 700122]
          Length = 258

 Score = 38.1 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
           I   +   + +IPG+    A R + E + K+   SSV
Sbjct: 200 INTADEAALDRIPGVGPATA-RAIVEEREKSGPFSSV 235



 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  + GVG   A  ++     +    S+       I ++ GI  K   R+
Sbjct: 208 LDRIPGVGPATARAIVEEREKSGPFSSVDD-----ITRVEGIGKKKLERM 252


>gi|220932909|ref|YP_002509817.1| recombination protein RecR [Halothermothrix orenii H 168]
 gi|254790771|sp|B8CZX0|RECR_HALOH RecName: Full=Recombination protein recR
 gi|219994219|gb|ACL70822.1| recombination protein RecR [Halothermothrix orenii H 168]
          Length = 198

 Score = 38.1 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
              ++++PGI  K A R+
Sbjct: 12  INQLSRLPGIGPKTAQRL 29


>gi|67925673|ref|ZP_00518989.1| Helicase RecD/TraA [Crocosphaera watsonii WH 8501]
 gi|67852481|gb|EAM47924.1| Helicase RecD/TraA [Crocosphaera watsonii WH 8501]
          Length = 748

 Score = 38.1 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++GVG   A  +++      L   II      + ++PGI  K    I
Sbjct: 99  IKGVGPVTAKRIVAHFGLDTLD--IIEYEIGRLVEVPGIGKKRVQMI 143


>gi|221195798|ref|ZP_03568851.1| excinuclease ABC, C subunit [Atopobium rimae ATCC 49626]
 gi|221184272|gb|EEE16666.1| excinuclease ABC, C subunit [Atopobium rimae ATCC 49626]
          Length = 646

 Score = 38.1 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 27  IIYCP-IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQ------ 79
            ++ P   T   L       +L++   +R +  R   F     R+      +V       
Sbjct: 541 EVFVPWDDTPIVLPSG--SASLYLIKQVRDESHR---FAITFHRELRDKAMTVSILDEIP 595

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           GVG +    ++    + + + +    +      + GIS  +A  I  ELK
Sbjct: 596 GVGPKRKKDLMRHFGSFKKLNAASADDIAD---VKGISPALAQTIFDELK 642


>gi|330506342|ref|YP_004382770.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927150|gb|AEB66952.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 395

 Score = 38.1 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 24/117 (20%)

Query: 49  VETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK 108
           +     ++     GFLS+ D               ++A+      +  +   +   +   
Sbjct: 299 IHMAFDEN-----GFLSNSD--------------PKLAIARELLDSPVDPNSAAYRE--- 336

Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
            + ++PGI  + A RI+  L+ +   +S    + +  V K  A    +  +    + 
Sbjct: 337 -LIRVPGIGPRSAKRIIA-LRMRKNIVSKRELEALGVVIKRAAPFLKINGWRDTTLE 391


>gi|225165543|ref|ZP_03727363.1| Exodeoxyribonuclease V [Opitutaceae bacterium TAV2]
 gi|224800216|gb|EEG18626.1| Exodeoxyribonuclease V [Opitutaceae bacterium TAV2]
          Length = 759

 Score = 38.1 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V G+G   A  ++           ++ ++S  +  +PGI  K AS I
Sbjct: 116 VHGIGKAYANKIVDAFGTDTFR--VLSEDSGRLHDVPGIGKKRASAI 160


>gi|327542220|gb|EGF28710.1| DNA polymerase family X protein [Rhodopirellula baltica WH47]
          Length = 329

 Score = 38.1 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +V G+G +++  +   +    L E +   N   + ++PGI  K
Sbjct: 116 TVPGIGPQLSHRIYDHLHIETLPELLRAANDGRLNRVPGIGDK 158


>gi|255658598|ref|ZP_05404007.1| helicase, RecD/TraA family [Mitsuokella multacida DSM 20544]
 gi|260848963|gb|EEX68970.1| helicase, RecD/TraA family [Mitsuokella multacida DSM 20544]
          Length = 740

 Score = 38.1 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT------ELKG 130
           V G+G  +A  ++ +     L  ++I Q    + ++ GI  K   +I        EL+ 
Sbjct: 108 VDGIGPALAKRIVQKFGKKTL--TVIEQTPHRLGEVAGIGKKTIEKITASYAAQSELRD 164


>gi|262280261|ref|ZP_06058045.1| DNA-binding protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258039|gb|EEY76773.1| DNA-binding protein [Acinetobacter calcoaceticus RUH2202]
          Length = 420

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 15/104 (14%)

Query: 29  YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLL-QSVQGV 81
           Y PI T +  L  +G    L  E   +     +R +GF  +    ++  F  L   V   
Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFQVNEIVNEK--FPNLDLDVD-- 312

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +++  +       +    +   + ++I ++PGI +K A +I+
Sbjct: 313 -PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352


>gi|160932696|ref|ZP_02080085.1| hypothetical protein CLOLEP_01537 [Clostridium leptum DSM 753]
 gi|156867770|gb|EDO61142.1| hypothetical protein CLOLEP_01537 [Clostridium leptum DSM 753]
          Length = 738

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 63  FLSDLDRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F    +      L S  V+G+G  +A  ++       L   ++  + + +A + GIS   
Sbjct: 76  FQPAGEGAILRYLSSGAVKGIGPVMAARLVDAFGDQTLE--VLENHPERLASVKGISKAK 133

Query: 121 ASRIMTEL 128
           A +I +EL
Sbjct: 134 AQQIASEL 141


>gi|157375985|ref|YP_001474585.1| recombination protein RecR [Shewanella sediminis HAW-EB3]
 gi|189029376|sp|A8FX84|RECR_SHESH RecName: Full=Recombination protein recR
 gi|157318359|gb|ABV37457.1| recombination protein RecR [Shewanella sediminis HAW-EB3]
          Length = 199

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL++         +  +PG+  K A R+  +L  +       + Q ++    +  H  
Sbjct: 7   VDELIQ--------SLKCLPGVGPKSAQRMAFQLLERDRKAGQTLAQALASAMSDVGHCR 58

Query: 155 SMPSFAIN 162
           S  +F   
Sbjct: 59  SCRTFTEE 66


>gi|87307031|ref|ZP_01089177.1| DNA processing chain A [Blastopirellula marina DSM 3645]
 gi|87290404|gb|EAQ82292.1| DNA processing chain A [Blastopirellula marina DSM 3645]
          Length = 407

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 78  VQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           V GVG R +  +L R  T   ++ +   +    + ++ G+  K++ +I
Sbjct: 53  VSGVGPRTSQVLLERFGTHAGVLAATRSE----LERVSGVGPKLSQKI 96


>gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
 gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
          Length = 675

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 19/116 (16%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI------- 124
           F+    ++ VG   A+ + +   +   +E+I   +   + ++P +   +A  +       
Sbjct: 514 FIFALGIREVGEATALALATYFGS---IEAIRAADLDSLLEVPDVGPVVAQHLRAFFSAQ 570

Query: 125 ----MTE--LKGKAISLSSVVQQDMSCVNKEQAHICS---MPSFAINAISALVNLG 171
               + E  L    +  +    Q+     + Q  + S          A  AL  LG
Sbjct: 571 ANQQVLERLLAAGVVWPAVSPAQNAQGPLEGQTWVVSGKLESQSRDEAEEALRALG 626


>gi|172037739|ref|YP_001804240.1| recombination protein RecR [Cyanothece sp. ATCC 51142]
 gi|171699193|gb|ACB52174.1| recombination protein [Cyanothece sp. ATCC 51142]
          Length = 202

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 15  IEQLQRLPGVGPKTAQRLAL 34


>gi|220932130|ref|YP_002509038.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Halothermothrix orenii H 168]
 gi|219993440|gb|ACL70043.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Halothermothrix orenii H 168]
          Length = 245

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 9/60 (15%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
             LQ + G+G   A  ++               +   +  + GI  K   +    LK K 
Sbjct: 192 EQLQKLPGIGPSKARSIVKYREENGFFT-----DKAQLLNVSGIGEKTYEK----LKDKV 242


>gi|300860782|ref|ZP_07106869.1| putative ComE operon protein 1 [Enterococcus faecalis TUSoD Ef11]
 gi|300849821|gb|EFK77571.1| putative ComE operon protein 1 [Enterococcus faecalis TUSoD Ef11]
          Length = 214

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  + GI  K   R+
Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 206


>gi|156740035|ref|YP_001430164.1| phosphotransferase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156231363|gb|ABU56146.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 580

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM---- 125
             L  V G+G R A  +   L   +  EL  +        +A + G   K    I+    
Sbjct: 95  RELLRVPGIGPRTAGRLYRELGITSLAELKVAAEAG---RLAALKGFGAKTIDSILQGIS 151

Query: 126 -TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA 160
             E + + + L+  +    + +N  +A + ++   A
Sbjct: 152 AAERQERRMLLAHAIDSAEALINALRAAVPALSQAA 187


>gi|116494812|ref|YP_806546.1| DNA uptake protein related DNA-binding protein [Lactobacillus casei
           ATCC 334]
 gi|116104962|gb|ABJ70104.1| DNA uptake protein related DNA-binding protein [Lactobacillus casei
           ATCC 334]
          Length = 223

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120
            LQ++ G+G + A  ++S R +          ++   + ++ GI  K 
Sbjct: 170 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 211


>gi|227535191|ref|ZP_03965240.1| competence protein EA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187236|gb|EEI67303.1| competence protein EA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 227

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120
            LQ++ G+G + A  ++S R +          ++   + ++ GI  K 
Sbjct: 174 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 215


>gi|319891432|ref|YP_004148307.1| Recombination protein RecR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161128|gb|ADV04671.1| Recombination protein RecR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323465398|gb|ADX77551.1| recombination protein RecR [Staphylococcus pseudintermedius ED99]
          Length = 198

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRI---MTELK 129
                ++PGI  K A R+   + ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHVLDMK 36


>gi|297182769|gb|ADI18923.1| recombinational DNA repair protein (recf pathway) [uncultured SAR11
           cluster bacterium HF0010_09O16]
          Length = 203

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 107 SKVIAQIPGISMKIASRIMTEL---KGKAIS 134
            K+I+++PG+  K A RI+ +L   K + + 
Sbjct: 11  IKIISKLPGLGPKSAKRIVLKLINNKDELVK 41


>gi|126660894|ref|ZP_01731986.1| Helicase RecD/TraA [Cyanothece sp. CCY0110]
 gi|126617848|gb|EAZ88625.1| Helicase RecD/TraA [Cyanothece sp. CCY0110]
          Length = 763

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++GVG   A  +++      L   II    + + ++PGI  K
Sbjct: 122 IRGVGPVTAKRIVAYFQLETLE--IIENQIERLVEVPGIGKK 161


>gi|311898810|dbj|BAJ31218.1| putative helicase RecD/TraA family protein [Kitasatospora setae
           KM-6054]
          Length = 732

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G R A  ++ R  A  L   +I    K + ++PG+  K
Sbjct: 93  IKGIGPRFAERIVERFGAETLE--VIENEPKRLIEVPGLGPK 132


>gi|291566399|dbj|BAI88671.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 551

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            L+S+ G+G  +A  ++   +         L +     ++ GI  K   R
Sbjct: 501 ELESLPGIGPALAQRIIEARSQQPFTS---LDDV---TRVSGIGPKTIER 544


>gi|284036517|ref|YP_003386447.1| recombination protein RecR [Spirosoma linguale DSM 74]
 gi|283815810|gb|ADB37648.1| recombination protein RecR [Spirosoma linguale DSM 74]
          Length = 203

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 19/39 (48%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
              ++++PGI  K A R++  L  +    +  + Q ++ 
Sbjct: 12  VNEVSKLPGIGKKTALRLVLHLLKRDEEQTETLAQSLTA 50


>gi|86610315|ref|YP_479077.1| recombination protein RecR [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123500273|sp|Q2JH53|RECR_SYNJB RecName: Full=Recombination protein recR
 gi|86558857|gb|ABD03814.1| recombination protein RecR [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 199

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 21/56 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
            + + ++PGI  K A R+   L  +       + + +    +   H     +++  
Sbjct: 10  IEELQRLPGIGSKTAQRLALHLINRPAGEIEALAKALLEAKQTVRHCSICFNWSAE 65


>gi|73663585|ref|YP_302366.1| recombination protein RecR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123641631|sp|Q49UY9|RECR_STAS1 RecName: Full=Recombination protein recR
 gi|72496100|dbj|BAE19421.1| recombinational DNA repair protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 198

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRI---MTELK 129
                ++PGI  K A R+   + ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHVLDMK 36


>gi|325283190|ref|YP_004255731.1| Histidyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314999|gb|ADY26114.1| Histidyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 430

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 20/139 (14%)

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS-MKIASRIMTELKGKAISLSS 137
           QG+GA+ A+G         L + +  ++      +PGI       RI+  ++ + +S  +
Sbjct: 283 QGIGAKSALG--GGGRYDGLAQELGAKDE-----VPGIGWAFGIERILLAMEDEGLSFPA 335

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLG----YGQDQATTAVVSVLKKEKN--- 190
            V   +     +  H+  + + A  A    V  G    + +  A  A     ++      
Sbjct: 336 AVGPALYLAALDDEHVALVAALARQARQ--VA-GADFSFRRRGAGQAFKEADRRGARWAA 392

Query: 191 --IADDSQIIRLALRAISC 207
              ++++   RL L+ +S 
Sbjct: 393 VIGSNEAAQQRLTLKNLSS 411


>gi|293384504|ref|ZP_06630375.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
 gi|291078160|gb|EFE15524.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
          Length = 59

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + +       A+ AL  LGY   +       +    +   D    +  AL+ +
Sbjct: 6   VTTSNQALAEALEALSALGYSDREIKRITKQLEALGETTTDV--YLSNALKFM 56


>gi|226525323|gb|ACO70921.1| pyridoxal phosphate biosynthetic protein PdxA [uncultured
           Verrucomicrobia bacterium]
          Length = 334

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 20/132 (15%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA-----SRIM--TELKGKA 132
           GVG  V + +L+  +       ++  +++++A+      + A      RI+   E     
Sbjct: 15  GVGPEVCLQLLANESVHAFATPVVFGDARLLARC----ARQAGLTPPRRIISEIEWAEVC 70

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
            +L      D+   + E     ++ +    A       GY   +   ++ + L K+    
Sbjct: 71  GTLDEPCVLDLFGFDAESFEPGTVSAKTGAA-------GYRYVE--KSIEAALAKQVAAV 121

Query: 193 DDSQIIRLALRA 204
             + + + ALRA
Sbjct: 122 ATAPLNKEALRA 133


>gi|257059083|ref|YP_003136971.1| recombination protein RecR [Cyanothece sp. PCC 8802]
 gi|256589249|gb|ACV00136.1| recombination protein RecR [Cyanothece sp. PCC 8802]
          Length = 197

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 10  IEQLQRLPGVGPKTAQRLAL 29


>gi|218246033|ref|YP_002371404.1| recombination protein RecR [Cyanothece sp. PCC 8801]
 gi|254790764|sp|B7K2B2|RECR_CYAP8 RecName: Full=Recombination protein recR
 gi|218166511|gb|ACK65248.1| recombination protein RecR [Cyanothece sp. PCC 8801]
          Length = 197

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 10  IEQLQRLPGVGPKTAQRLAL 29


>gi|193213501|ref|YP_001999454.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086978|gb|ACF12254.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 417

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 13/107 (12%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82
           V Y  + P+   + L  +     L     +     +R +GF S  +    +L      + 
Sbjct: 250 VYYSAFVPVNEDNRLPVLSAPPLLREHRLYQADWLLRFYGF-SPEE----ILSDDAPNLD 304

Query: 83  ----ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                + A  +            I   +   + ++PGI +  A RI+
Sbjct: 305 ESFDPKTAWALRH---PEFFPVEINRADYATLLRVPGIGVVSAKRII 348


>gi|86606039|ref|YP_474802.1| recombination protein RecR [Synechococcus sp. JA-3-3Ab]
 gi|123506557|sp|Q2JUS3|RECR_SYNJA RecName: Full=Recombination protein recR
 gi|86554581|gb|ABC99539.1| recombination protein RecR [Synechococcus sp. JA-3-3Ab]
          Length = 199

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 21/56 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
            + + ++PGI  K A R+   L  +       + + +    +   H     +++  
Sbjct: 10  IEELQRLPGIGSKTAQRLALHLLNRPAGEVEALAKALLEAKQTVKHCSICFNWSAE 65


>gi|291560255|emb|CBL39055.1| helicase, putative, RecD/TraA family [butyrate-producing bacterium
           SSC/2]
          Length = 776

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           ++GVG  +A  +  +         +I +  + +A++ GIS K A  I  E   K
Sbjct: 109 IKGVGPALAKRITKKFKMDTFR--VIEEEPERLAEVKGISEKKARAIAVEFSEK 160


>gi|187918328|ref|YP_001883891.1| recombination protein RecR [Borrelia hermsii DAH]
 gi|119861176|gb|AAX16971.1| recombination protein RecR [Borrelia hermsii DAH]
          Length = 194

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 101 SIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
            II     +++++PGI  K ASR++ ++  K    +  + Q +S ++  
Sbjct: 1   MIIQDLIVLVSKLPGIGKKTASRMVYDILYKGEEYAKNLGQILSNLHSS 49


>gi|294817096|ref|ZP_06775738.1| WD-40 repeat-containing protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294321911|gb|EFG04046.1| WD-40 repeat-containing protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 1178

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 65/209 (31%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P RT   L   G    L V+    ++   L       +R  F+ L +  G G R  + V
Sbjct: 109 APFRTHQALLTPG--ALLLVDQF--EEVFTLC--RDPAERDAFIGLLT--GPGRRAVLAV 160

Query: 90  ------------------------LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                                   +  +T  +L  ++             +    A R++
Sbjct: 161 RADFSGRCAEHPALAAALREAALLVGPMTPEQLRAAV-------------VGPATAERLI 207

Query: 126 T--ELKGKAISLSSVVQQDMSCVNKEQAHI---CSMPSFAINAISAL------------- 167
              EL  + ++ ++     +  ++             +    A  A+             
Sbjct: 208 VERELTARIVADAAGEPGGLPLLSHALLETWRRRRGRTLTAEAYEAIGGMRGAVAHTAEE 267

Query: 168 --VNLGYGQDQATTAVVSVLKKEKNIADD 194
               LG  + QA  A++  L    +  +D
Sbjct: 268 VFTALGPHERQAARALLLRLISPGDATED 296


>gi|261418422|ref|YP_003252104.1| helicase, RecD/TraA family [Geobacillus sp. Y412MC61]
 gi|319767618|ref|YP_004133119.1| helicase, RecD/TraA family [Geobacillus sp. Y412MC52]
 gi|261374879|gb|ACX77622.1| helicase, RecD/TraA family [Geobacillus sp. Y412MC61]
 gi|317112484|gb|ADU94976.1| helicase, RecD/TraA family [Geobacillus sp. Y412MC52]
          Length = 786

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 28/101 (27%)

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
           +G+G + A  ++  +     + +I+  + K + ++P ++ K A ++              
Sbjct: 107 KGIGKKTAAAIVETLG-ENAIAAILR-DPKALERVPKLTKKKAKQL-------------- 150

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
                                    + AL  LG+G   A  
Sbjct: 151 ------------YDALRAHEGLEQTMIALAQLGFGPQLAMK 179


>gi|193213289|ref|YP_001999242.1| excinuclease ABC subunit C [Chlorobaculum parvum NCIB 8327]
 gi|193086766|gb|ACF12042.1| excinuclease ABC, C subunit [Chlorobaculum parvum NCIB 8327]
          Length = 629

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 17/105 (16%)

Query: 27  IIYCPI-RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLS------DLDRQWFMLLQSVQ 79
            I+ P  R    L K      L     +R +  R   F          DR     L  ++
Sbjct: 523 EIFVPNERDPYNLPKTSPALKLL--QQLRDEAHR---FAITYHRKLRSDRTIRTELTGIK 577

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           GVG + A  +LSR  +   VE++   + + ++++     K A  I
Sbjct: 578 GVGEKSAEKLLSRFGS---VETVAKASIEELSEVT--GRKTAESI 617


>gi|167768241|ref|ZP_02440294.1| hypothetical protein CLOSS21_02797 [Clostridium sp. SS2/1]
 gi|167709765|gb|EDS20344.1| hypothetical protein CLOSS21_02797 [Clostridium sp. SS2/1]
          Length = 776

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           ++GVG  +A  +  +         +I +  + +A++ GIS K A  I  E   K
Sbjct: 109 IKGVGPALAKRITKKFKMDTFR--VIEEEPERLAEVKGISEKKARAIAVEFSEK 160


>gi|317497793|ref|ZP_07956105.1| RecD/TraA family helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894906|gb|EFV17076.1| RecD/TraA family helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 755

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           ++GVG  +A  +  +         +I +  + +A++ GIS K A  I  E   K
Sbjct: 88  IKGVGPALAKRITKKFKMDTFR--VIEEEPERLAEVKGISEKKARAIAVEFSEK 139


>gi|149927018|ref|ZP_01915276.1| recombination protein RecR [Limnobacter sp. MED105]
 gi|149824239|gb|EDM83459.1| recombination protein RecR [Limnobacter sp. MED105]
          Length = 211

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 9/46 (19%)

Query: 84  RVAMGVLSRITA-TELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R A      +    +LV++        + ++PG+  K A R+   L
Sbjct: 3   RSAFDAFDGLDPLVDLVQA--------LKRLPGVGPKSAQRLAFHL 40


>gi|83588903|ref|YP_428912.1| DNA replication and repair protein RecR [Moorella thermoacetica
           ATCC 39073]
 gi|123525295|sp|Q2RMH0|RECR_MOOTA RecName: Full=Recombination protein recR
 gi|83571817|gb|ABC18369.1| DNA replication and repair protein RecR [Moorella thermoacetica
           ATCC 39073]
          Length = 199

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
              + ++PGI  K A R+   L
Sbjct: 11  ITALGRLPGIGPKTAQRLAFHL 32


>gi|307150454|ref|YP_003885838.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7822]
 gi|306980682|gb|ADN12563.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7822]
          Length = 742

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 14/83 (16%)

Query: 39  GKIGD--FCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96
            + G       + ET            L+ +++     L    GVG   A  +++     
Sbjct: 73  PQYGQQFEVQQYTETKPAT--------LTGMEKYLGSGLIK--GVGPVTAKRIVAHFGLE 122

Query: 97  ELVESIILQNSKVIAQIPGISMK 119
            L   II   ++ + ++PGI  K
Sbjct: 123 TLE--IIENKTQRLIEVPGIGKK 143


>gi|167629259|ref|YP_001679758.1| recombination protein recr [Heliobacterium modesticaldum Ice1]
 gi|229890152|sp|B0TB20|RECR_HELMI RecName: Full=Recombination protein recR
 gi|167591999|gb|ABZ83747.1| recombination protein recr [Heliobacterium modesticaldum Ice1]
          Length = 199

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + ++++PG+  K A R+   L
Sbjct: 12  IEELSKLPGVGPKTAQRLAFHL 33


>gi|83814168|ref|YP_445312.1| DNA processing protein DprA [Salinibacter ruber DSM 13855]
 gi|83755562|gb|ABC43675.1| DNA processing protein DprA [Salinibacter ruber DSM 13855]
          Length = 388

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           L  V GVG +    +L+         +I   +   + Q+ G+  + A  I+T
Sbjct: 26  LSLVSGVGPQRLRALLAAFETP---TAIFRASRSTLTQVDGVGDQTAEAILT 74


>gi|67921773|ref|ZP_00515290.1| RecR protein [Crocosphaera watsonii WH 8501]
 gi|67856365|gb|EAM51607.1| RecR protein [Crocosphaera watsonii WH 8501]
          Length = 202

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 15  IEQLQRLPGVGPKTAQRLAL 34


>gi|332666194|ref|YP_004448982.1| Recombination protein recR [Haliscomenobacter hydrossis DSM 1100]
 gi|332335008|gb|AEE52109.1| Recombination protein recR [Haliscomenobacter hydrossis DSM 1100]
          Length = 203

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A +PGI  K A R++  L
Sbjct: 12  VNAFASLPGIGKKTALRLVLHL 33


>gi|256956726|ref|ZP_05560897.1| competence protein comEA [Enterococcus faecalis DS5]
 gi|256947222|gb|EEU63854.1| competence protein comEA [Enterococcus faecalis DS5]
          Length = 211

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  + GI  K   R+
Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 203


>gi|226227004|ref|YP_002761110.1| UvrABC system protein C [Gemmatimonas aurantiaca T-27]
 gi|259710341|sp|C1A8T0|UVRC_GEMAT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226090195|dbj|BAH38640.1| UvrABC system protein C [Gemmatimonas aurantiaca T-27]
          Length = 616

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 16/101 (15%)

Query: 28  IYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           +  P R+  L  L +  D    F  T  RQ             R     L  + GVG   
Sbjct: 505 VRLPRRSPALRMLQQARDEAHRFAITFQRQ---------KRAARTITSELLKIPGVGPTK 555

Query: 86  AMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125
              +L    +   + E+ + Q    IA IPG     A R++
Sbjct: 556 RRALLHTFGSVQGVREASVEQ----IAAIPGFGAASARRLL 592


>gi|301066374|ref|YP_003788397.1| DNA uptake protein-like DNA-binding protein [Lactobacillus casei
           str. Zhang]
 gi|300438781|gb|ADK18547.1| DNA uptake protein related DNA-binding protein [Lactobacillus casei
           str. Zhang]
          Length = 227

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120
            LQ++ G+G + A  ++S R +          ++   + ++ GI  K 
Sbjct: 174 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 215


>gi|300709586|ref|YP_003735400.1| DNA mismatch repair protein MutS domain protein [Halalkalicoccus
           jeotgali B3]
 gi|299123269|gb|ADJ13608.1| DNA mismatch repair protein MutS domain protein [Halalkalicoccus
           jeotgali B3]
          Length = 658

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S+ GVGA+ A  +       +   ++   +   +A  PGIS   A+RI
Sbjct: 5   SIPGVGAKTASALA---ELEDAKRALREGDVAALAGAPGISEGRAARI 49


>gi|302533805|ref|ZP_07286147.1| excinuclease ABC, C subunit [Streptomyces sp. C]
 gi|302442700|gb|EFL14516.1| excinuclease ABC, C subunit [Streptomyces sp. C]
          Length = 684

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
           L  V G+G    + ++    +  +L ++ I Q    I ++PGI  K A 
Sbjct: 598 LDDVPGLGESRKLALVKHFGSVKKLRQATIDQ----ICEVPGIGRKTAE 642


>gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101]
 gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101]
          Length = 662

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 444 AMNIAGFSERTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149
           +I       +        IP + +K A  ++      E   KA     V  QD+  +   
Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554

Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177
                      +  I+ L++LG    Y + + 
Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586


>gi|77458035|ref|YP_347540.1| recombination protein RecR [Pseudomonas fluorescens Pf0-1]
 gi|123605283|sp|Q3KFA5|RECR_PSEPF RecName: Full=Recombination protein recR
 gi|77382038|gb|ABA73551.1| recombination protein [Pseudomonas fluorescens Pf0-1]
          Length = 200

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
              +  +PG+  K A R+  +L  +  S  + + Q +S   +   H     +   + +
Sbjct: 11  IDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMEGVGHCRQCRTLTEDDL 68


>gi|255513551|gb|EET89817.1| ERCC4 domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 222

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++  +G ++A  +L    +   +++I     + + ++  I  K A +I
Sbjct: 163 NIPDIGPKIATALLLHFGS---IKAISEATIEELCRVDKIGPKKAEKI 207


>gi|189466061|ref|ZP_03014846.1| hypothetical protein BACINT_02426 [Bacteroides intestinalis DSM
           17393]
 gi|189434325|gb|EDV03310.1| hypothetical protein BACINT_02426 [Bacteroides intestinalis DSM
           17393]
          Length = 205

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           +    ++ +     A++PG+  K A R++  L
Sbjct: 4   QFSSILLEKAVSEFAKLPGVGRKTAMRLVLHL 35


>gi|326446014|ref|ZP_08220748.1| WD-40 repeat protein [Streptomyces clavuligerus ATCC 27064]
          Length = 1245

 Score = 38.1 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 65/209 (31%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P RT   L   G    L V+    ++   L       +R  F+ L +  G G R  + V
Sbjct: 176 APFRTHQALLTPG--ALLLVDQF--EEVFTLC--RDPAERDAFIGLLT--GPGRRAVLAV 227

Query: 90  ------------------------LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                                   +  +T  +L  ++             +    A R++
Sbjct: 228 RADFSGRCAEHPALAAALREAALLVGPMTPEQLRAAV-------------VGPATAERLI 274

Query: 126 T--ELKGKAISLSSVVQQDMSCVNKEQAHI---CSMPSFAINAISAL------------- 167
              EL  + ++ ++     +  ++             +    A  A+             
Sbjct: 275 VERELTARIVADAAGEPGGLPLLSHALLETWRRRRGRTLTAEAYEAIGGMRGAVAHTAEE 334

Query: 168 --VNLGYGQDQATTAVVSVLKKEKNIADD 194
               LG  + QA  A++  L    +  +D
Sbjct: 335 VFTALGPHERQAARALLLRLISPGDATED 363


>gi|293389009|ref|ZP_06633491.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
 gi|291081628|gb|EFE18591.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
          Length = 59

 Score = 38.1 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 2/58 (3%)

Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
                + +       A+ AL  LGY   +       +    +   D    +  AL+ +
Sbjct: 1   PAPEVVTTSNQALAEALEALSALGYSDREIKRITKQLEALGETTTDV--YLSNALKFM 56


>gi|302390204|ref|YP_003826025.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302200832|gb|ADL08402.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 406

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 245 EEDLALLDTIPGVGRRTAEQIIAE 268


>gi|239626524|ref|ZP_04669555.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516670|gb|EEQ56536.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 442

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGFLSDL----DRQWFMLLQS 77
           V Y  Y P+   SCL  + G    L     +     +R +GF ++     DR  F +   
Sbjct: 250 VFYSAYIPVNEDSCLPSLPGGPPLLREHRLYQADWLLRFYGFRAEELLSEDRPNFNVFLD 309

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           + L     + +IPG+ +K ASRI+
Sbjct: 310 -----PKCDWALRHLEGFPVE-----VNLAPYDELLRIPGMGVKSASRIV 349


>gi|126656915|ref|ZP_01728093.1| recombination protein RecR [Cyanothece sp. CCY0110]
 gi|126621753|gb|EAZ92462.1| recombination protein RecR [Cyanothece sp. CCY0110]
          Length = 202

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 15  IEQLQRLPGVGPKTAQRLAL 34


>gi|119370543|sp|Q607S4|UVRC_METCA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 610

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 49/160 (30%)

Query: 4   KIK-GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG---------------KIGDFCTL 47
           +I+ G +E    D + ID  G    I+   RTL+ LG               K G     
Sbjct: 452 RIRAGEVEA--PDILFID-GGKG-QIHAAARTLAELGVENIRIIGIAKGPDRKPGMETLF 507

Query: 48  FV-----------------ETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQGVGAR 84
                                H+R +  R   F     RQ          LQ++ G+G +
Sbjct: 508 QTGCSDPIVVKPDNPGSLLIQHIRDEAHR---FAITGHRQRRAKTVTRSPLQAIAGLGPK 564

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
               +L +     L + I   + + ++ + GI+ ++A RI
Sbjct: 565 RRQRLLRQFG--GLRQ-ISRADVEALSSVEGINRQLAQRI 601


>gi|169830252|ref|YP_001716234.1| recombination protein RecR [Candidatus Desulforudis audaxviator
           MP104C]
 gi|254790796|sp|B1I162|RECR_DESAP RecName: Full=Recombination protein recR
 gi|169637096|gb|ACA58602.1| recombination protein RecR [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 198

 Score = 38.1 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + +A++PGI  K A R+   L
Sbjct: 11  IEELARLPGIGPKTAQRLAFHL 32


>gi|21263932|sp|Q8YMF7|RECR_ANASP RecName: Full=Recombination protein recR
          Length = 197

 Score = 38.1 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 10  IEQLQRLPGVGPKTAQRLAL 29


>gi|317152945|ref|YP_004120993.1| excinuclease ABC subunit C [Desulfovibrio aespoeensis Aspo-2]
 gi|316943196|gb|ADU62247.1| excinuclease ABC, C subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 604

 Score = 38.1 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            L  + G+G + A  +  R  + +   +++  + + I  +PGI  K A  I
Sbjct: 546 ELTLLPGIGPKTARLLWDRFESLD---AMLAADPQAIRALPGIGGKKAELI 593


>gi|237731959|ref|ZP_04562440.1| excinuclease ABC subunit C [Citrobacter sp. 30_2]
 gi|226907498|gb|EEH93416.1| excinuclease ABC subunit C [Citrobacter sp. 30_2]
          Length = 610

 Score = 38.1 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + I +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASIEE----IAKVPGISQALAEKIFYSLK 609


>gi|74317464|ref|YP_315204.1| DNA polymerase X [Thiobacillus denitrificans ATCC 25259]
 gi|74056959|gb|AAZ97399.1| DNA polymerase X [Thiobacillus denitrificans ATCC 25259]
          Length = 574

 Score = 38.1 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 20/96 (20%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            L  + G+G R    +   L   T  +L  +      + +   PG   K       EL  
Sbjct: 95  ELLRIPGLGPRRVRALYHDLQVQTVEQLYRAARDGRIRAL---PGFGEKT------EL-- 143

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
                  +++   +  +K Q    ++ +   +A+SA
Sbjct: 144 ------HIIEAIEAHASKTQRFKLAVAAQYADALSA 173


>gi|330990424|ref|ZP_08314384.1| hypothetical protein SXCC_00337 [Gluconacetobacter sp. SXCC-1]
 gi|329762507|gb|EGG78991.1| hypothetical protein SXCC_00337 [Gluconacetobacter sp. SXCC-1]
          Length = 186

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           ++G+G   A  ++      E V  +I Q  + + ++ GI  K A RI+
Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPERLREVTGIGPKRAERIV 145


>gi|298675853|ref|YP_003727603.1| DNA primase small subunit [Methanohalobium evestigatum Z-7303]
 gi|298288841|gb|ADI74807.1| DNA primase, small subunit [Methanohalobium evestigatum Z-7303]
          Length = 391

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 47/174 (27%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTL-FVE------------THMRQDQ----IRLFGFL 64
            G  Y  +    ++  LG       + ++             +++  D       +F F 
Sbjct: 146 GGRGYHFHISHPSVRSLGSAERREIVDYISGRGLDISQIIGKSYVSGDSGRRDASMFVFP 205

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN--SKVIAQIPGISMKIAS 122
           S+ D           G GA++   ++S I+       I+  N   K +    G+    A 
Sbjct: 206 SEND----------GGWGAKINRYIISYISN------IVNSNKPIKKLTGFSGVGKTTAE 249

Query: 123 RIM--------TEL--KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
           +++          L  KGK   +S+  +     + K+   + ++ +     ++A
Sbjct: 250 KLVNIFNDEKQLALLKKGKIDMVSNTSKNLFEYLGKQA--VDNLIANVDEPVTA 301


>gi|239631592|ref|ZP_04674623.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526057|gb|EEQ65058.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 220

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120
            LQ++ G+G + A  ++S R +          ++   + ++ GI  K 
Sbjct: 167 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 208


>gi|15896108|ref|NP_349457.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD
           [Clostridium acetobutylicum ATCC 824]
 gi|15025899|gb|AAK80797.1|AE007783_4 ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD
           [Clostridium acetobutylicum ATCC 824]
 gi|325510262|gb|ADZ21898.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 739

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + G+G   A  ++++     L   I+  +   +++I GI  K   +I
Sbjct: 89  ISGIGPVTAKKIVNKFGEKTLE--ILDNDIYRLSEIEGIGKKKIDKI 133


>gi|333027927|ref|ZP_08455991.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071]
 gi|332747779|gb|EGJ78220.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071]
          Length = 907

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L ++ D    F  T+ R          S   ++ F    L  V G+G      +L  
Sbjct: 527 LYLLQRVRDEAHRFAITYQR----------SKRAKR-FRAGPLDEVPGLGQTRKQALLKH 575

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +  +L  + I Q    I ++PGI  K A  I+
Sbjct: 576 FGSVKKLRAATIEQ----ICEVPGIGRKTAETIL 605


>gi|254412067|ref|ZP_05025842.1| recombination protein RecR [Microcoleus chthonoplastes PCC 7420]
 gi|196181033|gb|EDX76022.1| recombination protein RecR [Microcoleus chthonoplastes PCC 7420]
          Length = 189

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 2   IEQLQRLPGVGPKTAQRLAL 21


>gi|191638323|ref|YP_001987489.1| ComE operon protein 1 [Lactobacillus casei BL23]
 gi|190712625|emb|CAQ66631.1| ComE operon protein 1 [Lactobacillus casei BL23]
 gi|327382349|gb|AEA53825.1| hypothetical protein LC2W_1492 [Lactobacillus casei LC2W]
 gi|327385550|gb|AEA57024.1| hypothetical protein LCBD_1527 [Lactobacillus casei BD-II]
          Length = 226

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120
            LQ++ G+G + A  ++S R +          ++   + ++ GI  K 
Sbjct: 173 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 214


>gi|158337044|ref|YP_001518219.1| recombination protein RecR [Acaryochloris marina MBIC11017]
 gi|189039775|sp|B0C882|RECR_ACAM1 RecName: Full=Recombination protein recR
 gi|158307285|gb|ABW28902.1| recombination protein RecR [Acaryochloris marina MBIC11017]
          Length = 200

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + + ++PGI  K A R+   L
Sbjct: 13  VEQLQRLPGIGPKSAQRLALHL 34


>gi|320161955|ref|YP_004175180.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1]
 gi|319995809|dbj|BAJ64580.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1]
          Length = 581

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 62  GFLSDLDRQW---FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           GFL  L+++     + L  + GVG R A      +  T LVE         +  +PG+  
Sbjct: 83  GFLERLEQEVPPTLLDLLRIPGVGPRKAALFWKTLHITTLVELEKAAREGRLRSLPGMGE 142

Query: 119 KIASRIMTE 127
           K   + + +
Sbjct: 143 KS-EKAILD 150


>gi|148643247|ref|YP_001273760.1| Hef nuclease [Methanobrevibacter smithii ATCC 35061]
 gi|222445478|ref|ZP_03607993.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349960|ref|ZP_05975377.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
           2374]
 gi|148552264|gb|ABQ87392.1| ERCC4-like helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222435043|gb|EEE42208.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860743|gb|EFC93041.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
           2374]
          Length = 772

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++Q F+ ++S+  +G   A  +L    T   ++ +   Q    + ++ GI  K A+ I
Sbjct: 699 EQQLFI-IESLPNIGPVNAKNLLEHFGTVANIINASESQ----LQEVEGIGKKTAANI 751


>gi|319745670|gb|EFV97969.1| exodeoxyribonuclease V alpha subunit [Streptococcus agalactiae ATCC
           13813]
          Length = 806

 Score = 37.7 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           Q  GI  K A RI+ EL G            +    ++ + I  +      A  A + L 
Sbjct: 94  QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146

Query: 172 YGQDQATTAVVS 183
           YG +Q    +  
Sbjct: 147 YGTEQVLAKLAE 158


>gi|224539567|ref|ZP_03680106.1| hypothetical protein BACCELL_04474 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518801|gb|EEF87906.1| hypothetical protein BACCELL_04474 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 205

 Score = 37.7 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           +    ++ +     A++PG+  K A R++  L
Sbjct: 4   QFSSILLEKAVSEFAKLPGVGRKTAMRLVLHL 35


>gi|224475613|ref|YP_002633219.1| recombination protein RecR [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254790783|sp|B9DLF7|RECR_STACT RecName: Full=Recombination protein recR
 gi|222420220|emb|CAL27034.1| putative recombination protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 198

 Score = 37.7 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRI---MTELK 129
                ++PGI  K A R+   + ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHVLDMK 36


>gi|332710481|ref|ZP_08430428.1| DNA replication and repair protein RecR [Lyngbya majuscula 3L]
 gi|332350812|gb|EGJ30405.1| DNA replication and repair protein RecR [Lyngbya majuscula 3L]
          Length = 198

 Score = 37.7 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 11  IEELQRLPGVGPKTAQRLAL 30


>gi|307209304|gb|EFN86389.1| DNA polymerase beta [Harpegnathos saltator]
          Length = 333

 Score = 37.7 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 76  QSVQGVGARVAMGV---LSRITATELVESIILQNSK-----VIAQIPGISMKIASRIM 125
             + G+G ++A  +   L   T  EL +  + ++ K     ++ +IPGI    A +++
Sbjct: 63  MKLPGIGKKIADHINEFLETGTHKELQQ--VKKDDKQDAIILLMKIPGIGPAKAEQLI 118


>gi|237807578|ref|YP_002892018.1| DNA-directed DNA polymerase [Tolumonas auensis DSM 9187]
 gi|237499839|gb|ACQ92432.1| DNA-directed DNA polymerase [Tolumonas auensis DSM 9187]
          Length = 351

 Score = 37.7 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 109 VIAQIPGISMKIASRIM 125
            +++IPGI  K A R++
Sbjct: 177 ALSKIPGIGGKTAERLV 193


>gi|302389095|ref|YP_003824916.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302199723|gb|ADL07293.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 356

 Score = 37.7 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 195 EEDLALLDTIPGVGRRTAEQIIAE 218


>gi|283832687|ref|ZP_06352428.1| excinuclease ABC subunit C [Citrobacter youngae ATCC 29220]
 gi|291072363|gb|EFE10472.1| excinuclease ABC subunit C [Citrobacter youngae ATCC 29220]
          Length = 610

 Score = 37.7 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + I +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASIEE----IAKVPGISQALAEKIFYSLK 609


>gi|119473243|ref|ZP_01614920.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7]
 gi|119444537|gb|EAW25854.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7]
          Length = 98

 Score = 37.7 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 102 IILQNSKVIAQIPGISMKIASRIM 125
           I   ++K++A++PGI  K A  I+
Sbjct: 40  INSADAKMLAKLPGIGKKKAQAIV 63


>gi|108805770|ref|YP_645707.1| helix-hairpin-helix DNA-binding, class 1 [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767013|gb|ABG05895.1| Helix-hairpin-helix DNA-binding, class 1 [Rubrobacter xylanophilus
           DSM 9941]
          Length = 350

 Score = 37.7 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           L+ V+GV  R A      I   EL E I   + K ++++PG+  + A
Sbjct: 114 LERVRGVDRRAAAKAAEAIGPGELRELIAAGDVKDLSRLPGMGERRA 160


>gi|297529274|ref|YP_003670549.1| helicase, RecD/TraA family [Geobacillus sp. C56-T3]
 gi|297252526|gb|ADI25972.1| helicase, RecD/TraA family [Geobacillus sp. C56-T3]
          Length = 786

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 28/101 (27%)

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
           +G+G + A  ++  +     + +I+  + K + ++P ++ K A ++              
Sbjct: 107 KGIGKKTAAAIVETLG-ENAIAAILR-DPKTLERVPKLTKKKAKQL-------------- 150

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
                                    + AL  LG+G   A  
Sbjct: 151 ------------YDALRAHEGLEQTMIALAQLGFGPQLAMK 179


>gi|224024429|ref|ZP_03642795.1| hypothetical protein BACCOPRO_01154 [Bacteroides coprophilus DSM
           18228]
 gi|224017651|gb|EEF75663.1| hypothetical protein BACCOPRO_01154 [Bacteroides coprophilus DSM
           18228]
          Length = 226

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128
            +++ +     A++PGI  K A R++  L
Sbjct: 28  SALLEKAVGEFAKLPGIGRKTAMRLVLHL 56


>gi|218439363|ref|YP_002377692.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7424]
 gi|218172091|gb|ACK70824.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7424]
          Length = 747

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 14/83 (16%)

Query: 39  GKIGD--FCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96
            + G       + ET            L+ +++     L    G+G  +A  +++     
Sbjct: 73  PQYGQQFEVQQYTETKPAT--------LTGMEKYLGSGLIK--GLGPVMARRIVAHFGLE 122

Query: 97  ELVESIILQNSKVIAQIPGISMK 119
            L   II   ++ + ++PGI  K
Sbjct: 123 TLE--IIENKTERLIEVPGIGKK 143


>gi|77412139|ref|ZP_00788462.1| helicase, RecD/TraA family [Streptococcus agalactiae CJB111]
 gi|77161799|gb|EAO72787.1| helicase, RecD/TraA family [Streptococcus agalactiae CJB111]
          Length = 806

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           Q  GI  K A RI+ EL G            +    ++ + I  +      A  A + L 
Sbjct: 94  QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146

Query: 172 YGQDQATTAVVS 183
           YG +Q    +  
Sbjct: 147 YGTEQVLAKLAE 158


>gi|307565357|ref|ZP_07627850.1| recombination protein RecR [Prevotella amnii CRIS 21A-A]
 gi|307346026|gb|EFN91370.1| recombination protein RecR [Prevotella amnii CRIS 21A-A]
          Length = 202

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 96  TELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
            E    ++ +     +Q PGI  K A R++  L
Sbjct: 2   QEFHSLLLEKAVNEFSQFPGIGRKTALRLVLHL 34


>gi|302551555|ref|ZP_07303897.1| exodeoxyribonuclease V, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469173|gb|EFL32266.1| exodeoxyribonuclease V, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 756

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  V        L   II +  K + ++PG+  K   +I
Sbjct: 102 VKGIGPVFADRVTQHFGLDTLR--IIEEEPKRLIEVPGLGPKRTKKI 146


>gi|256963616|ref|ZP_05567787.1| competence protein comEA [Enterococcus faecalis HIP11704]
 gi|256954112|gb|EEU70744.1| competence protein comEA [Enterococcus faecalis HIP11704]
          Length = 211

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+GA+ A  ++         +++       +  + GI  K   R+
Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 203


>gi|53804488|ref|YP_113677.1| hypothetical protein MCA1213 [Methylococcus capsulatus str. Bath]
 gi|53758249|gb|AAU92540.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 574

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            L  + G+G +    +   L   T  +L  ++     + +A   G   K  SRI   L  
Sbjct: 95  ELLKIPGLGPKRVKALYHELDIHTVEQLQRAVRDHRIRSLA---GFGEKTESRIAEALAT 151

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
                        +   +  A          + + A
Sbjct: 152 HGGGAGRFKLVTAAQYAEPLAAWLRAVPGVDDVVVA 187


>gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1]
 gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1]
 gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1]
 gi|167727974|emb|CAP14762.1| nuclease domain protein / probable ATP-dependent helicase
           [Halobacterium salinarum R1]
          Length = 784

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + S+  VG   A  +L    +   VE+++  +   +    G+    A RI
Sbjct: 727 VSSITDVGPVTARSLLDTFGS---VEAVMTASEDELTAADGVGAVTAERI 773


>gi|22537863|ref|NP_688714.1| helicase [Streptococcus agalactiae 2603V/R]
 gi|76787041|ref|YP_330332.1| RecD/TraA family helicase [Streptococcus agalactiae A909]
 gi|76798404|ref|ZP_00780645.1| helicase, RecD/TraA family [Streptococcus agalactiae 18RS21]
 gi|77405957|ref|ZP_00783036.1| helicase, RecD/TraA family [Streptococcus agalactiae H36B]
 gi|22534759|gb|AAN00587.1|AE014270_5 helicase, putative [Streptococcus agalactiae 2603V/R]
 gi|76562098|gb|ABA44682.1| helicase, RecD/TraA family [Streptococcus agalactiae A909]
 gi|76586236|gb|EAO62753.1| helicase, RecD/TraA family [Streptococcus agalactiae 18RS21]
 gi|77175409|gb|EAO78199.1| helicase, RecD/TraA family [Streptococcus agalactiae H36B]
          Length = 806

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           Q  GI  K A RI+ EL G            +    ++ + I  +      A  A + L 
Sbjct: 94  QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146

Query: 172 YGQDQATTAVVS 183
           YG +Q    +  
Sbjct: 147 YGTEQVLAKLAE 158


>gi|332883359|gb|EGK03642.1| recombination protein recR [Dysgonomonas mossii DSM 22836]
          Length = 207

 Score = 37.7 bits (87), Expect = 0.90,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128
            +++       A++PGI  K A R++  L
Sbjct: 7   SALLENAVNEFAKLPGIGRKTALRLILHL 35


>gi|289579052|ref|YP_003477679.1| Tn7-like transposition protein C [Thermoanaerobacter italicus Ab9]
 gi|289528765|gb|ADD03117.1| Tn7-like transposition protein C [Thermoanaerobacter italicus Ab9]
          Length = 553

 Score = 37.7 bits (87), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 147 NKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +++    ++ S    AI  L+ L     +A  AV  V++ E    D S+++  A++ +S
Sbjct: 437 QRKEEEKEALLSIKEQAIIKLLELNIEAKKAQKAVEQVIEAEGEKIDVSELVVKAIKLLS 496

Query: 207 C 207
            
Sbjct: 497 T 497


>gi|297562768|ref|YP_003681742.1| helicase, RecD/TraA family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847216|gb|ADH69236.1| helicase, RecD/TraA family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 750

 Score = 37.7 bits (87), Expect = 0.90,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           ++G+G ++A  ++       L   +I ++ + + ++PG+  K  +R++ +
Sbjct: 98  IKGIGPKMAERIVDHFGTDALE--VIEEHPERLIEVPGLGPKR-TRLIAD 144


>gi|330808466|ref|YP_004352928.1| Recombination protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376574|gb|AEA67924.1| Recombination protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 200

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152
              +  +PG+  K A R+  +L  +  S  S + Q +S   +   H
Sbjct: 11  IDALRTLPGVGQKTAQRMALQLLERDRSGGSRLAQALSQAMEGVGH 56


>gi|291278576|ref|YP_003495411.1| DNA recombination protein RecR [Deferribacter desulfuricans SSM1]
 gi|290753278|dbj|BAI79655.1| DNA recombination protein RecR [Deferribacter desulfuricans SSM1]
          Length = 199

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 110 IAQIPGISMKIASRIMTEL 128
           ++++PGI  K A+R+   L
Sbjct: 14  LSKLPGIGKKTATRLALHL 32


>gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
 gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
          Length = 664

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 27/172 (15%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            GV Y  YC   TLSC  ++       V    R+  + + GF      Q F  L  ++ +
Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSKKTAEQLFEKL-DIKSI 468

Query: 82  G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127
               ++    L  +       +  L+++I      +         IP +  K A+ ++ +
Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQ 174
            K      ++ ++Q +   +  +    S+  F  +      I  L+NLG   
Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKP 580


>gi|186471701|ref|YP_001863019.1| Tn7-like transposition protein C [Burkholderia phymatum STM815]
 gi|184198010|gb|ACC75973.1| Tn7-like transposition protein C [Burkholderia phymatum STM815]
          Length = 540

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 118 MKIASRIMTELKGKAISL------SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
            K   RI  EL    +          + +Q  S    + A      S  + A+S L+ +G
Sbjct: 405 KK--RRI--ELYDDLLVEMLAGLDEEIRKQTESAKVMQAATQRQRNSVQLIAVSDLIAMG 460

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLA 201
             Q QA TAV++ L ++ ++     ++R A
Sbjct: 461 VPQSQALTAVIAALTEDDSLT-GEDLVRAA 489


>gi|148654262|ref|YP_001274467.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566372|gb|ABQ88517.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 580

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 31/120 (25%), Gaps = 32/120 (26%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMK---------- 119
             L  V GVG R A  +   L   +  EL  +        +A + G   K          
Sbjct: 95  RELLRVPGVGPRTAGRLYRELGITSLAELKRAAEEG---RLATLKGFGAKMIEGILQGIS 151

Query: 120 ----------------IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
                            A  ++  L+  A +L            +       +   A +A
Sbjct: 152 VAERQERRMLLAHALETAEELILALRTAAPTLRQATYAGSLRRGRPTVGDLDILVAADDA 211


>gi|145344073|ref|XP_001416563.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576789|gb|ABO94856.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1843

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 123  RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
            RI+   +    S++S   + +  V    A   S  +  ++AI AL+ L        +AV 
Sbjct: 1753 RIV---RDSKESVASFAVEPLLEVVVAAAGDSSSTALRLDAIEALLALA-SHTPVKSAVE 1808

Query: 183  SVLKKEKNIADDSQIIRLALRA 204
              LK+         ++R A+RA
Sbjct: 1809 DALKQCVTNDKSPDVVRSAMRA 1830


>gi|25011808|ref|NP_736203.1| hypothetical protein gbs1769 [Streptococcus agalactiae NEM316]
 gi|77413668|ref|ZP_00789852.1| helicase, RecD/TraA family [Streptococcus agalactiae 515]
 gi|24413349|emb|CAD47428.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160268|gb|EAO71395.1| helicase, RecD/TraA family [Streptococcus agalactiae 515]
          Length = 806

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           Q  GI  K A RI+ EL G            +    ++ + I  +      A  A + L 
Sbjct: 94  QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146

Query: 172 YGQDQATTAVVS 183
           YG +Q    +  
Sbjct: 147 YGTEQVLAKLAE 158


>gi|325694042|gb|EGD35960.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK150]
          Length = 445

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY--GQDQAT 178
           A + + +LK +  +  ++  +     N   A          + ++ L NLGY   + +  
Sbjct: 182 AEKGLLQLKLEGPASDTLELEAGQAFNVVPAKASYSGDLLESVVAGLKNLGYEFERAEEE 241

Query: 179 TAVVSVLKKEKNIA-DDSQIIRLA--LRAISC 207
             V+ + K  K+ A   + IIRLA  L+ +  
Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQPLDS 273


>gi|310826753|ref|YP_003959110.1| hypothetical protein ELI_1159 [Eubacterium limosum KIST612]
 gi|308738487|gb|ADO36147.1| hypothetical protein ELI_1159 [Eubacterium limosum KIST612]
          Length = 736

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            G+G + A+ +++   A  L   I+  +   ++++ GI  K   +I
Sbjct: 89  PGIGEKTAIEIVNHFGADTLD--ILDNHPDRLSEVHGIGKKTLDKI 132


>gi|225375281|ref|ZP_03752502.1| hypothetical protein ROSEINA2194_00906 [Roseburia inulinivorans DSM
           16841]
 gi|225212948|gb|EEG95302.1| hypothetical protein ROSEINA2194_00906 [Roseburia inulinivorans DSM
           16841]
          Length = 474

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  +  +   S L  +     L  E  + Q    L  + F +D     +R  F +   
Sbjct: 293 VFYSAFVNVTHNSNLPALPGGPPLLREHRLYQADWLLRYYKFKADELLSPERPDFNIFLD 352

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           I   +   + ++PGI  K ASRI+
Sbjct: 353 -----PKCDWAIRHLEYFPVE-----INRADYDTLLRVPGIGYKSASRIV 392


>gi|119713123|gb|ABL97192.1| recombination protein RecR [uncultured marine bacterium EB0_49D07]
          Length = 195

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131
            + +  +PG+  K A R+   L  K
Sbjct: 10  IEALTILPGVGKKSAQRMALFLLDK 34


>gi|29840243|ref|NP_829349.1| recombination protein RecR [Chlamydophila caviae GPIC]
 gi|33301498|sp|Q823D7|RECR_CHLCV RecName: Full=Recombination protein recR
 gi|29834591|gb|AAP05227.1| recombination protein RecR [Chlamydophila caviae GPIC]
          Length = 200

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152
             ++ ++PGI  K A ++  EL          + Q  S V+  ++H
Sbjct: 12  ISLLRKLPGIGFKTAEKLAFELLDWDQDQLEAMGQAFSEVSAARSH 57


>gi|77409449|ref|ZP_00786143.1| helicase, RecD/TraA family [Streptococcus agalactiae COH1]
 gi|77171941|gb|EAO75116.1| helicase, RecD/TraA family [Streptococcus agalactiae COH1]
          Length = 763

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           Q  GI  K A RI+ EL G            +    ++ + I  +      A  A + L 
Sbjct: 94  QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146

Query: 172 YGQDQATTAVVS 183
           YG +Q    +  
Sbjct: 147 YGTEQVLAKLAE 158


>gi|326800491|ref|YP_004318310.1| recombination protein recR [Sphingobacterium sp. 21]
 gi|326551255|gb|ADZ79640.1| Recombination protein recR [Sphingobacterium sp. 21]
          Length = 204

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
               +++PGI  K A R++  L  +     +     ++ +  E  +     + A  AI
Sbjct: 12  VNEFSRLPGIGQKTALRLVLHLLNQPADDVTKFSDALTKLKSEICYCAVCHNIADEAI 69


>gi|50546232|ref|XP_500637.1| YALI0B08338p [Yarrowia lipolytica]
 gi|49646503|emb|CAG82879.1| YALI0B08338p [Yarrowia lipolytica]
          Length = 4696

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 17/147 (11%)

Query: 67   LDRQWFMLLQSVQGVGARVAMGVLSRIT--ATELVESIILQNSKVIAQIPGISMKIASRI 124
             +RQ +    +V GV A  ++ + + +      + E+I  +   ++    G       ++
Sbjct: 1223 DERQLYDH-VTVPGVDANSSVVMTNGLRRLVYLVQEAIKHKEPILLVGETGCGKTTVCQL 1281

Query: 125  MTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL------GYGQ 174
            + E + K      +  ++   D+    +   +   + S   +A+  L  L      G   
Sbjct: 1282 LAEARDKELHIVNAHQNMETGDIIGSFRPVRNRSDLESRFRDAL--LEALGDEDTAGLSN 1339

Query: 175  DQATTAVVSVLKKEKNIADDSQIIRLA 201
             +     +S+LKK+     +   I+ A
Sbjct: 1340 SELDVKYLSLLKKDPESFPEE--IKQA 1364


>gi|307326032|ref|ZP_07605230.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113]
 gi|306888254|gb|EFN19242.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113]
          Length = 736

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
           L SV G+G      +L    +   L  + + Q    I ++PG+  K A 
Sbjct: 651 LDSVPGLGDSRKQALLKHFGSVKRLRAATVEQ----ICEVPGVGRKTAE 695


>gi|53804578|ref|YP_113788.1| recombination protein RecR [Methylococcus capsulatus str. Bath]
 gi|73621498|sp|Q609A9|RECR_METCA RecName: Full=Recombination protein recR
 gi|53758339|gb|AAU92630.1| recombination protein RecR [Methylococcus capsulatus str. Bath]
          Length = 198

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCVN 147
            + +  +PG+  K A R+   L    +  A  LS  ++Q +  V 
Sbjct: 11  IEALRCLPGVGPKTAQRMTLHLLQRDRDAAGRLSEALRQALEKVG 55


>gi|322804437|emb|CBZ01987.1| recd-like DNA helicase YrrC [Clostridium botulinum H04402 065]
          Length = 744

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           + G+G   A  ++ +     L   I+  N + + +I GI  K   
Sbjct: 88  ISGIGPVTAKKIVKKFGEATLN--ILDNNIERLTEIEGIGKKKIE 130


>gi|297195043|ref|ZP_06912441.1| UvrABC system protein C [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721566|gb|EDY65474.1| UvrABC system protein C [Streptomyces pristinaespiralis ATCC 25486]
          Length = 688

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133
           L +V G+G      ++    +   L ++ I Q    I ++PG+  K A  ++  L   A 
Sbjct: 611 LDAVPGLGETRKQALIKHFGSVKRLRQATIEQ----ICEVPGMGRKTAESVVVALAQTAP 666

Query: 134 SLSSVVQQDMSCVNKEQAHICS 155
              +V       + +      +
Sbjct: 667 PAPAVNTATGEIIEESDGGSTT 688


>gi|34497067|ref|NP_901282.1| recombination protein RecR [Chromobacterium violaceum ATCC 12472]
 gi|73621478|sp|Q7NXL4|RECR_CHRVO RecName: Full=Recombination protein recR
 gi|34102924|gb|AAQ59288.1| DNA repair DNA recombination zinc-finger protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 198

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 107 SKVIAQIPGISMKIASRIMTEL--KGKAISLSSVVQQDMSCVN 147
              +  +PG+  K A R+   L  + K  +       D +   
Sbjct: 11  ISALKVLPGVGPKTAQRMAFHLLQRDKQGADKLARALDRALTQ 53


>gi|258510127|ref|YP_003183561.1| recombination protein RecR [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476853|gb|ACV57172.1| recombination protein RecR [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 199

 Score = 37.7 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRI---MTELKGKAISLSSVVQQDMSCVNKEQA 151
              +  +I         ++PG+  K A+R+   + E+    +   +    D+     E A
Sbjct: 5   PEPVARAIEH-----FMKLPGVGPKTAARLAFHVLEMSEADVKAFAKALIDLKTGLTECA 59

Query: 152 HICSMPSFAINAI 164
             C++   +  AI
Sbjct: 60  VCCNITEASPCAI 72


>gi|304411681|ref|ZP_07393293.1| ERCC4 domain protein [Shewanella baltica OS183]
 gi|307306267|ref|ZP_07586012.1| ERCC4 domain protein [Shewanella baltica BA175]
 gi|304349869|gb|EFM14275.1| ERCC4 domain protein [Shewanella baltica OS183]
 gi|306911140|gb|EFN41567.1| ERCC4 domain protein [Shewanella baltica BA175]
          Length = 212

 Score = 37.7 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +Q F+ LQS+  VG ++A  +L    +   VE+++  + + + Q+ GI    AS+I
Sbjct: 155 QQLFI-LQSLPEVGPKLANKLLCHFAS---VEAVVTASEEALMQVGGIGKNKASKI 206


>gi|292493086|ref|YP_003528525.1| excinuclease ABC, C subunit [Nitrosococcus halophilus Nc4]
 gi|291581681|gb|ADE16138.1| excinuclease ABC, C subunit [Nitrosococcus halophilus Nc4]
          Length = 604

 Score = 37.7 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+++ G+G +    +L+++    L E       + +A++PGIS  +A RI
Sbjct: 552 LETIPGLGPKRRQRLLTQLG--GLREVARAG-VEELARVPGISPGLAQRI 598


>gi|167040534|ref|YP_001663519.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X514]
 gi|256751705|ref|ZP_05492579.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914579|ref|ZP_07131895.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
 gi|307724186|ref|YP_003903937.1| transposase IS110 family protein [Thermoanaerobacter sp. X513]
 gi|166854774|gb|ABY93183.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X514]
 gi|256749374|gb|EEU62404.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889514|gb|EFK84660.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
 gi|307581247|gb|ADN54646.1| transposase IS110 family protein [Thermoanaerobacter sp. X513]
          Length = 406

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            Q+  ++  IPG+  + A +I+ E
Sbjct: 245 EQDLALLDTIPGVGRRTAEQIIAE 268


>gi|91792785|ref|YP_562436.1| recombination protein RecR [Shewanella denitrificans OS217]
 gi|123356908|sp|Q12PB3|RECR_SHEDO RecName: Full=Recombination protein recR
 gi|91714787|gb|ABE54713.1| recombination protein RecR [Shewanella denitrificans OS217]
          Length = 199

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL+++        +  +PG+  K A R+   L  +   +   + + +     +  H  
Sbjct: 7   VDELIQA--------LKGLPGVGPKSAQRMAFNLLERDRKVGLKLAESLKNAMTDVGHCQ 58

Query: 155 SMPSFAINAI 164
           S  +F   ++
Sbjct: 59  SCRTFTEQSL 68


>gi|56697474|ref|YP_167842.1| uroporphyrin-III C-methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56679211|gb|AAV95877.1| uroporphyrin-III C-methyltransferase [Ruegeria pomeroyi DSS-3]
          Length = 258

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 18/125 (14%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG------ISMKIAS----RIM 125
           QS+   G   A+  L+              +   +A+ PG      +  K A     R++
Sbjct: 137 QSLTRRGRNSAVRFLTGHDMQGF----ADHDWTALAR-PGAVAAIYMGKKSARFVQGRLI 191

Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS---ALVNLGYGQDQATTAVV 182
                +A  ++ V              +  +P+    A     AL  LG     A TA+ 
Sbjct: 192 MHGADRATPVTLVENASRPDQRVLATTLDRLPADLAAAEMDGPALTFLGLAPRDAATALS 251

Query: 183 SVLKK 187
           ++ K+
Sbjct: 252 TINKE 256


>gi|313665092|ref|YP_004046963.1| glycosyl hydrolase, family 31 [Mycoplasma leachii PG50]
 gi|312950007|gb|ADR24603.1| glycosyl hydrolase, family 31 [Mycoplasma leachii PG50]
          Length = 755

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77
            +++    +T     +IG   T  +   + QD + L+ F +   ++    + LL      
Sbjct: 224 GFLVNTSCKTTF---EIGSPTTDILSFKVDQDFLDLYLFSNQSLKELVSSYTLLTNRISK 280

Query: 78  VQGVGARVAMGVLSRITATELVESI 102
           V  +G  V +  L      EL E+I
Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305


>gi|110597648|ref|ZP_01385933.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110340768|gb|EAT59245.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
          Length = 418

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 23/112 (20%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR---------QWFM 73
           V Y  Y P+   + L  +     L     +     +R +GF S  +          + F 
Sbjct: 251 VYYSAYVPVSDDNRLPVLAAPPLLREHRLYQADWLLRFYGF-SAEEILSDDAPHLDESFD 309

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                     + A  +            I   +   + ++PGI +  A RI+
Sbjct: 310 ---------PKTAWALRH---PEFFPVEINRADYATLLRVPGIGVTSAKRIV 349


>gi|530423|emb|CAA83743.1| similar to isomaltase-sucrase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 316

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77
            +++    +T     +IG   T  +   + QD + L+ F +   ++    + LL      
Sbjct: 224 GFLVNTSCKTTF---EIGSPTTDILSFKVDQDFLDLYLFSNQSLKELVSSYTLLTNRISK 280

Query: 78  VQGVGARVAMGVLSRITATELVESI 102
           V  +G  V +  L      EL E+I
Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305


>gi|83320029|ref|YP_424147.1| isoglycosyl hydrolase family protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283915|gb|ABC01847.1| isoglycosyl hydrolases family 31, putative [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
          Length = 755

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77
            +++    +T     +IG   T  +   + QD + L+ F +   ++    + LL      
Sbjct: 224 GFLVNTSCKTTF---EIGSPTTDILSFKVDQDFLDLYLFSNQSLKELVSSYTLLTNRISK 280

Query: 78  VQGVGARVAMGVLSRITATELVESI 102
           V  +G  V +  L      EL E+I
Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305


>gi|315925751|ref|ZP_07921958.1| recombination protein R [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620860|gb|EFV00834.1| recombination protein R [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 200

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 107 SKVIAQIPGISMKIASRIMTELKG 130
              ++++PGI  K A R+   L  
Sbjct: 12  VAELSKLPGIGEKTAQRLAFHLID 35


>gi|284034556|ref|YP_003384487.1| SNF2-like protein [Kribbella flavida DSM 17836]
 gi|283813849|gb|ADB35688.1| SNF2-related protein [Kribbella flavida DSM 17836]
          Length = 742

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167
             +  +PGI  K A         K       V  D++   + +           + ++ L
Sbjct: 101 AELVALPGIGPKTA--------DKITEAVRAVVGDVARSAQFRFQPDRPDDAQRDLLATL 152

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
             +     +A  AV  ++   + +   +Q
Sbjct: 153 TAI----RRADAAVAGLIGPVRELTGVTQ 177


>gi|199598189|ref|ZP_03211611.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           rhamnosus HN001]
 gi|258508329|ref|YP_003171080.1| DNA uptake protein-like DNA-binding protein [Lactobacillus
           rhamnosus GG]
 gi|199590950|gb|EDY99034.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           rhamnosus HN001]
 gi|257148256|emb|CAR87229.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           rhamnosus GG]
 gi|259649645|dbj|BAI41807.1| DNA uptake protein [Lactobacillus rhamnosus GG]
          Length = 221

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120
            L ++ G+G + A  ++S R +          ++   + ++ GI  K 
Sbjct: 168 QLTTISGIGPKKAADIISYRDSHGGF------KDINELKEVHGIGDKT 209


>gi|149173335|ref|ZP_01851965.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
 gi|148847517|gb|EDL61850.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
          Length = 573

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 75  LQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           +  + G+G +    + S ++     +L  +       VIA+  G   K   +I+ E
Sbjct: 95  MLDIPGIGPKKVAFLFSELSIQSLDDLKAAAENG---VIAEQKGFGKKT-EQIILE 146



 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 19/77 (24%)

Query: 75  LQSVQGVGA------RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT-- 126
           L  +QG         R A   +S +    + + I+  + + +  +PGI   +A +I+T  
Sbjct: 16  LLEIQGANPFRLRAYRNAARTISGL-PDSIQD-IVESDPRELQDLPGIGKDLAEKIVTIV 73

Query: 127 ---------ELKGKAIS 134
                    ELK +  +
Sbjct: 74  ETSTLPQLEELKEQIPA 90


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 63/223 (28%)

Query: 25  CYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFGFLSDLDRQ----WFMLLQSVQ 79
            Y     I TLS  G   G    +       +D ++L G     +R         L  V+
Sbjct: 110 GYEADDLIGTLSRQGAATGLEVLILT---GDRDALQLVG-----ERVKVLLMRRGLSQVE 161

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQ--------IPGISMKIASRIMT----- 126
            +  R A+     +   +L+      + K +          +PG+  K A +++      
Sbjct: 162 VID-REAIKKNYGLEPEQLI------DVKALMGDASDNIPGVPGVGEKTAVQLVRQYGDL 214

Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------------AISA 166
                   E+KG+ ++ + V   D + + +  A I       ++            A+ A
Sbjct: 215 EGVLAHSGEIKGRRVAENLVTFADQARLARRLATIDCQAPVTLDLAGCCNQSPDYEAVLA 274

Query: 167 LVNLGYGQDQATTAVVSVL---KKEKNIADDSQIIRLALRAIS 206
           L    Y + +  + V  VL   ++E   A        A+R +S
Sbjct: 275 L----YKELEFHSLVKDVLRAMEQEGKKASQET---TAVRGLS 310


>gi|260549878|ref|ZP_05824094.1| DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260407128|gb|EEX00605.1| DNA-binding protein [Acinetobacter sp. RUH2624]
          Length = 420

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 13/108 (12%)

Query: 24  VCYIIYCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQS 77
           V Y  Y PI T +  L  +G    L  E   +     +R +GF  +    ++   + L  
Sbjct: 252 VYYSGYIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPNLDL-- 309

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
              V  +++  +       +    +   + ++I ++PGI +K A +I+
Sbjct: 310 --DVDPKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352


>gi|170759254|ref|YP_001785497.1| RecD/TraA family helicase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406243|gb|ACA54654.1| helicase, RecD/TraA family [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 744

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           + G+G   A  ++ +     L   I+  N + +  I GI  K    I
Sbjct: 88  ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTDIEGIGKKKIEII 132


>gi|81428681|ref|YP_395681.1| putative type II secretion/competence system, protein ComEA-like
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610323|emb|CAI55372.1| Putative bacterial type II secretion/competence system, protein
           ComEA-like [Lactobacillus sakei subsp. sakei 23K]
          Length = 234

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+G + A  +++        + I       + ++ GI  K   ++
Sbjct: 182 QLQTLNGIGPKKAEQIIAYRDEQGKFKQIED-----LQKVGGIGPKTFEQL 227


>gi|326391909|ref|ZP_08213418.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992045|gb|EGD50528.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 115

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 5   EKDLALLDTIPGVGRRTAEQIIAE 28


>gi|229552126|ref|ZP_04440851.1| competence protein EA [Lactobacillus rhamnosus LMS2-1]
 gi|258539539|ref|YP_003174038.1| DNA uptake protein-like DNA-binding protein [Lactobacillus
           rhamnosus Lc 705]
 gi|229314559|gb|EEN80532.1| competence protein EA [Lactobacillus rhamnosus LMS2-1]
 gi|257151215|emb|CAR90187.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           rhamnosus Lc 705]
          Length = 221

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120
            L ++ G+G + A  ++S R +          ++   + ++ GI  K 
Sbjct: 168 QLTTISGIGPKKAADIISYRDSHGGF------KDINELKEVHGIGDKT 209


>gi|225848762|ref|YP_002728926.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644290|gb|ACN99340.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 582

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 72  FMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM--T 126
           F+ L  V G G +    +   L   T  EL++++       +A++ G   K    ++   
Sbjct: 92  FLELMDVPGFGPKTLKRIYQELGISTKEELIKALKDG---RVAKLKGFGPKKVENMLKGL 148

Query: 127 ELKGKAIS 134
           EL  K+  
Sbjct: 149 ELYEKSKE 156


>gi|52786737|ref|YP_092566.1| hypothetical protein BLi03006 [Bacillus licheniformis ATCC 14580]
 gi|163119581|ref|YP_080151.2| hypothetical protein BL00334 [Bacillus licheniformis ATCC 14580]
 gi|52349239|gb|AAU41873.1| YshC [Bacillus licheniformis ATCC 14580]
 gi|145903091|gb|AAU24513.2| putative DNA polymerase YshC [Bacillus licheniformis ATCC 14580]
          Length = 571

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 19/138 (13%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           L  + G+G +    +   L    A  L E+   Q  + +A   G   K   +I       
Sbjct: 90  LLKLPGLGGKKIAKLYQELGVCDAASLKEACEQQKVQGLA---GFGKKTEEKI------- 139

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATTAVVSVLKKEK- 189
              L ++ +          A   ++       +  L  L  + +  +       +K    
Sbjct: 140 ---LQALGEAGKRPERYPIAVALAVADIIEEQLEGLPGLIKFSRAGSLRRAKETVKDLDY 196

Query: 190 -NIADDSQIIRLALRAIS 206
                D +++R  L  +S
Sbjct: 197 IMAVTDPELVREGLLKLS 214


>gi|284051767|ref|ZP_06381977.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Arthrospira platensis str. Paraca]
          Length = 551

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            L+S+ G+G  +A  ++   +         L +     ++ GI  K   R
Sbjct: 501 ELESLPGIGPGLAQRIIEARSQQPFTS---LDDV---TRVSGIGPKTIER 544


>gi|257888173|ref|ZP_05667826.1| helicase RecD/TraA [Enterococcus faecium 1,141,733]
 gi|257824227|gb|EEV51159.1| helicase RecD/TraA [Enterococcus faecium 1,141,733]
          Length = 856

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A + + EL G     K I+  SV++Q       ++   A 
Sbjct: 88  ANGIVAYLSSEKFPGIGKKTAEK-VVELLGEDAIEKIIADPSVLKQIAGLTKPKREMLAE 146

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171


>gi|240103390|ref|YP_002959699.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
 gi|239910944|gb|ACS33835.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
          Length = 581

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 102 IILQNSKVIAQIPGISMKIASRIM 125
           +  ++ KV+  IPGI  K A+RI+
Sbjct: 529 VNRESPKVLQLIPGIGKKTATRIL 552


>gi|209525765|ref|ZP_03274301.1| helix-hairpin-helix motif [Arthrospira maxima CS-328]
 gi|209493738|gb|EDZ94057.1| helix-hairpin-helix motif [Arthrospira maxima CS-328]
          Length = 551

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            L+S+ G+G  +A  ++   +         L +     ++ GI  K   R
Sbjct: 501 ELESLPGIGPGLAQRIIEARSQQPFTS---LDDV---TRVSGIGPKTIER 544


>gi|269102847|ref|ZP_06155544.1| excinuclease ABC subunit C [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162745|gb|EEZ41241.1| excinuclease ABC subunit C [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 589

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L+ ++GVG +    +L  +    EL  +   +    IA++PGIS+ +A +I+
Sbjct: 536 LEDIEGVGPKRRQALLKYMGGLQELKRASKEE----IAKVPGISLALAEKIV 583


>gi|227552598|ref|ZP_03982647.1| exodeoxyribonuclease V alpha subunit [Enterococcus faecium TX1330]
 gi|257896936|ref|ZP_05676589.1| helicase RecD/TraA [Enterococcus faecium Com12]
 gi|293379121|ref|ZP_06625272.1| helicase, RecD/TraA family [Enterococcus faecium PC4.1]
 gi|227178224|gb|EEI59196.1| exodeoxyribonuclease V alpha subunit [Enterococcus faecium TX1330]
 gi|257833501|gb|EEV59922.1| helicase RecD/TraA [Enterococcus faecium Com12]
 gi|292642262|gb|EFF60421.1| helicase, RecD/TraA family [Enterococcus faecium PC4.1]
          Length = 856

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152
                  ++  + PGI  K A + + EL G     K I+  SV++Q       ++   A 
Sbjct: 88  ANGIVAYLSSEKFPGIGKKTAEK-VVELLGEDAIEKIIADPSVLKQIAGLTKPKREMLAE 146

Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177
              +       I  L   G+G   A
Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171


>gi|119370545|sp|P57882|UVRC_PASMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 608

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 38  LGKIGDFCTLFVETHMRQDQIR--LFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSRI 93
           L    D   L +  H+R +  +  + G      +Q F+   L+SV+GVGA+    +L  +
Sbjct: 516 LHLPSDHLALHLIQHIRDESHQHAISG-HRKKRQQAFLQSGLESVEGVGAKRRQTLLKYL 574

Query: 94  T-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
                + ++ + +    IA +PGIS  +A RI   L+ 
Sbjct: 575 GGMQGVKKATLDE----IASVPGISKALAERIYDALRD 608


>gi|94500849|ref|ZP_01307375.1| recombination protein RecR [Oceanobacter sp. RED65]
 gi|94426968|gb|EAT11950.1| recombination protein RecR [Oceanobacter sp. RED65]
          Length = 199

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 90  LSRITA--TELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVN 147
           ++ ++    ELVE+        +  +PG+  K A R+   L  K  S +  +   +S   
Sbjct: 1   MASLSPLINELVEA--------LTILPGVGPKSAQRLALHLLEKDQSGAHRLVGMLSKAL 52

Query: 148 KEQAH 152
            E  H
Sbjct: 53  DEVGH 57


>gi|15602722|ref|NP_245794.1| excinuclease ABC subunit C [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721167|gb|AAK02941.1| UvrC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 611

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 38  LGKIGDFCTLFVETHMRQDQIR--LFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSRI 93
           L    D   L +  H+R +  +  + G      +Q F+   L+SV+GVGA+    +L  +
Sbjct: 519 LHLPSDHLALHLIQHIRDESHQHAISG-HRKKRQQAFLQSGLESVEGVGAKRRQTLLKYL 577

Query: 94  T-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
                + ++ + +    IA +PGIS  +A RI   L+ 
Sbjct: 578 GGMQGVKKATLDE----IASVPGISKALAERIYDALRD 611


>gi|332534903|ref|ZP_08410723.1| competence protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035638|gb|EGI72128.1| competence protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 98

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 SI   +++++A++PGI  K A  I+
Sbjct: 33  PQAEAISINNADAEMLAKLPGIGKKKAQAIV 63


>gi|152998915|ref|YP_001364596.1| ERCC4 domain-containing protein [Shewanella baltica OS185]
 gi|160873501|ref|YP_001552817.1| ERCC4 domain-containing protein [Shewanella baltica OS195]
 gi|151363533|gb|ABS06533.1| ERCC4 domain protein [Shewanella baltica OS185]
 gi|160859023|gb|ABX47557.1| ERCC4 domain protein [Shewanella baltica OS195]
 gi|315265730|gb|ADT92583.1| ERCC4 domain protein [Shewanella baltica OS678]
          Length = 212

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +Q F+ LQS+  VG ++A  +L    +   VE+++  + + + Q+ GI    AS+I
Sbjct: 155 QQLFI-LQSLPEVGPKLANKLLCHFAS---VEAVVTASEEALMQVGGIGKNKASKI 206


>gi|317120923|ref|YP_004100926.1| DNA replication and repair protein RecR [Thermaerobacter
           marianensis DSM 12885]
 gi|315590903|gb|ADU50199.1| DNA replication and repair protein RecR [Thermaerobacter
           marianensis DSM 12885]
          Length = 199

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCV 146
              + ++PGI  K A R+   L    + +  +L+  + Q  + V
Sbjct: 11  IAELEKLPGIGPKTAQRLAYHLLFRPQDEVRALAEAMVQARASV 54


>gi|299144371|ref|ZP_07037451.1| competence protein [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518856|gb|EFI42595.1| competence protein [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 196

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 102 IILQNSKVIAQIPGISMKIASRIM 125
           I   + +++  +PG+  K A +I+
Sbjct: 138 INTADMQMLTSLPGVGEKTAKKII 161


>gi|297182625|gb|ADI18783.1| recombinational DNA repair protein (recf pathway) [uncultured SAR11
           cluster bacterium HF4000_37C10]
          Length = 201

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146
            K+I+++PG+  K A RI+ +L      L+  +   ++ V
Sbjct: 13  IKIISKLPGLGPKSAKRIVLKLINNRDELAKPLVNTLAQV 52


>gi|229591980|ref|YP_002874099.1| recombination protein RecR [Pseudomonas fluorescens SBW25]
 gi|259563703|sp|C3JXP7|RECR_PSEFS RecName: Full=Recombination protein recR
 gi|229363846|emb|CAY51305.1| recombination protein [Pseudomonas fluorescens SBW25]
          Length = 200

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 20/56 (35%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
              +  +PG+  K A R+  +L  +  S  + + Q +S       H     +    
Sbjct: 11  IDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMTGVGHCRQCRTLTEE 66


>gi|304385154|ref|ZP_07367500.1| exodeoxyribonuclease V alpha subunit [Pediococcus acidilactici DSM
           20284]
 gi|304329348|gb|EFL96568.1| exodeoxyribonuclease V alpha subunit [Pediococcus acidilactici DSM
           20284]
          Length = 836

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 16/84 (19%)

Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA---- 166
           +Q  GI  K A +I+     K + + ++     +        + S  +  I  + A    
Sbjct: 119 SQFKGIGKKTAEKIV-----KQLGMDAIDVIKDNAQVLRDIGLSSAQADVIETVLAESNG 173

Query: 167 -------LVNLGYGQDQATTAVVS 183
                  L +LG     A   +  
Sbjct: 174 MEKILIKLADLGISGKTADNVIAK 197


>gi|284048802|ref|YP_003399141.1| helicase, RecD/TraA family [Acidaminococcus fermentans DSM 20731]
 gi|283953023|gb|ADB47826.1| helicase, RecD/TraA family [Acidaminococcus fermentans DSM 20731]
          Length = 721

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT---ELK 129
           +GVG  +A  ++ +     L   ++ +  + + ++ GI  K A  I+T   EL+
Sbjct: 93  KGVGPAMAQRIVDQFGEDTLE--VLEKFPERLREVSGIGKKKAEAIITSYGELR 144


>gi|270291441|ref|ZP_06197663.1| RecD/TraA family helicase [Pediococcus acidilactici 7_4]
 gi|270280287|gb|EFA26123.1| RecD/TraA family helicase [Pediococcus acidilactici 7_4]
          Length = 836

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 16/84 (19%)

Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA---- 166
           +Q  GI  K A +I+     K + + ++     +        + S  +  I  + A    
Sbjct: 119 SQFKGIGKKTAEKIV-----KQLGMDAIDVIKDNAQVLRDIGLSSAQADVIETVLAESNG 173

Query: 167 -------LVNLGYGQDQATTAVVS 183
                  L +LG     A   +  
Sbjct: 174 MEKILIKLADLGISGKTADNVIAK 197


>gi|329937887|ref|ZP_08287369.1| deoxyribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329302844|gb|EGG46733.1| deoxyribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 757

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  +        L  +II +  K + ++PG+  K   +I
Sbjct: 104 VKGIGPVFADRITQHFGIDTL--TIIEEEPKRLIEVPGLGPKRTKKI 148


>gi|121997039|ref|YP_001001826.1| recombination protein RecR [Halorhodospira halophila SL1]
 gi|171769498|sp|A1WTL2|RECR_HALHL RecName: Full=Recombination protein recR
 gi|121588444|gb|ABM61024.1| recombination protein RecR [Halorhodospira halophila SL1]
          Length = 201

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCVN 147
            + + ++PG+  K A R+   L    +  A  L+  +Q+ +  V 
Sbjct: 12  VEGLRRLPGVGAKTAQRMALHLLQRDRDGARQLADALQRAVDGVG 56


>gi|295697533|ref|YP_003590771.1| helicase, RecD/TraA family [Bacillus tusciae DSM 2912]
 gi|295413135|gb|ADG07627.1| helicase, RecD/TraA family [Bacillus tusciae DSM 2912]
          Length = 761

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++GVG + A  ++       L   +I      + ++ GI  + A +I
Sbjct: 87  IRGVGPKTAERLVDHFGQDILR--VIEDEPGRLREVEGIGARKAEQI 131


>gi|197121699|ref|YP_002133650.1| PHP domain protein [Anaeromyxobacter sp. K]
 gi|196171548|gb|ACG72521.1| PHP domain protein [Anaeromyxobacter sp. K]
          Length = 592

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 73  MLLQSVQGVGARV--AM-GVLSRITATELVESIILQNSKVIAQIPGISMKIASRI---MT 126
           + L  V  +G +   A+   L   +  EL  +        +  + G   K   RI   + 
Sbjct: 92  LELLRVPDLGPKKIAALHAALGVASVAELEAACREG---RVRGVKGFGEKTEQRILEGIA 148

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
            L  +      ++ + ++      AH+ ++P     A+ 
Sbjct: 149 RLHAREADRRVLLAEALTAAEPLLAHLRAVPG--AEAVE 185


>gi|126172618|ref|YP_001048767.1| ERCC4 domain-containing protein [Shewanella baltica OS155]
 gi|125995823|gb|ABN59898.1| ERCC4 domain protein [Shewanella baltica OS155]
          Length = 212

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +Q F+ LQS+  VG ++A  +L    +   VE+++  + + + Q+ GI    AS+I
Sbjct: 155 QQLFI-LQSLPEVGPKLANKLLCHFAS---VEAVVTASEEALMQVGGIGKNKASKI 206


>gi|315658134|ref|ZP_07911006.1| competence protein comEA [Staphylococcus lugdunensis M23590]
 gi|315496463|gb|EFU84786.1| competence protein comEA [Staphylococcus lugdunensis M23590]
          Length = 226

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  V G+G   A  +L+         S+       + +I GI  K   ++
Sbjct: 176 LTKVPGIGPSKAKEILNYKEQHGQFTSVDE-----LKKIKGIGEKTFEKL 220


>gi|289550639|ref|YP_003471543.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180171|gb|ADC87416.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           lugdunensis HKU09-01]
          Length = 187

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  V G+G   A  +L+         S+       + +I GI  K   ++
Sbjct: 137 LTKVPGIGPSKAKEILNYKEQHGQFTSVDE-----LKKIKGIGEKTFEKL 181


>gi|239610211|gb|EEQ87198.1| DNA repair protein RAD1 [Ajellomyces dermatitidis ER-3]
          Length = 925

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 109 VIAQIPGISMKIASRIMTE 127
           ++  +PG++ K+A R++ E
Sbjct: 865 MLQAVPGVTPKLAERLILE 883


>gi|261192729|ref|XP_002622771.1| DNA repair protein RAD1 [Ajellomyces dermatitidis SLH14081]
 gi|239589253|gb|EEQ71896.1| DNA repair protein RAD1 [Ajellomyces dermatitidis SLH14081]
          Length = 925

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 109 VIAQIPGISMKIASRIMTE 127
           ++  +PG++ K+A R++ E
Sbjct: 865 MLQAVPGVTPKLAERLILE 883


>gi|254456022|ref|ZP_05069451.1| recombination protein RecR [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083024|gb|EDZ60450.1| recombination protein RecR [Candidatus Pelagibacter sp. HTCC7211]
          Length = 203

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            K+I+++PG+  K A RI+ +L
Sbjct: 11  IKLISKLPGLGPKSAKRIVLKL 32


>gi|127513161|ref|YP_001094358.1| recombination protein RecR [Shewanella loihica PV-4]
 gi|166221964|sp|A3QF51|RECR_SHELP RecName: Full=Recombination protein recR
 gi|126638456|gb|ABO24099.1| recombination protein RecR [Shewanella loihica PV-4]
          Length = 199

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL++         +  +PG+  K A R+  +L  +       + Q +S    +  H  
Sbjct: 7   VDELIQ--------SLRCLPGVGPKSAQRMAFQLLERDRKAGHKLAQALSSAMSDVGHCS 58

Query: 155 SMPSFAINAI 164
           S  +F   ++
Sbjct: 59  SCRTFTEESL 68


>gi|37520198|ref|NP_923575.1| exodeoxyribonuclease V alpha chain [Gloeobacter violaceus PCC 7421]
 gi|35211191|dbj|BAC88570.1| exodeoxyribonuclease V alpha chain [Gloeobacter violaceus PCC 7421]
          Length = 745

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++GVG   A  +++      L   II  +   +A++PG+    A RI
Sbjct: 107 IKGVGPVTARRIVAHFGLASLE--IIESDCSRLAEVPGVG---AHRI 148


>gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032]
 gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032]
          Length = 717

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 66  DLDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
             +R  + +L   S++ VG   A  +     +   +E+I   + + ++ + G+   IA+ 
Sbjct: 539 ARERDLWRVLVALSIRHVGPTAAQALARHFRS---IEAIDNASEEELSSVDGVGPTIAAS 595

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL---------GYGQ 174
           I            +V           +A +             L  L         GY +
Sbjct: 596 I--------REWFAVDWHREVVRKWAEAGVRMAEEAVAEGPRPLEGLTVVVTGTLSGYSR 647

Query: 175 DQATTAVVS 183
           DQA  A+ S
Sbjct: 648 DQAAEAIQS 656


>gi|296273464|ref|YP_003656095.1| AAA ATPase [Arcobacter nitrofigilis DSM 7299]
 gi|296097638|gb|ADG93588.1| AAA ATPase [Arcobacter nitrofigilis DSM 7299]
          Length = 760

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 61  FGFLSDL--DRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           F F +    +++ +  L   V+G+G +VA+ +L + T  ELV  ++    + +    GI
Sbjct: 70  FAFDTLELKEQELYFFLTKIVKGIGRKVALELLEKYTEEELVT-VLNDKPEELLNFKGI 127


>gi|255523814|ref|ZP_05390779.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255512517|gb|EET88792.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 448

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIRLFGFLSDL---DRQW-FMLLQSV 78
           V Y  Y P+     L +I    TL      + D  +R++GF +     ++   F +    
Sbjct: 250 VYYSAYVPVNNSKNLPEIKTPPTLREHRLYQGDWLLRVYGFKAKELLNEKNPNFDI---- 305

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +  +   A+  +           I       + +IPGI ++ A +I+
Sbjct: 306 -NLDPKTTYALNNIHLFPVE-----INRAPYNTLIRIPGIGVRGAYKII 348


>gi|91211132|ref|YP_541118.1| excinuclease ABC subunit C [Escherichia coli UTI89]
 gi|237705868|ref|ZP_04536349.1| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA]
 gi|300935887|ref|ZP_07150844.1| excinuclease ABC subunit C [Escherichia coli MS 21-1]
 gi|119367648|sp|Q1RAM7|UVRC_ECOUT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91072706|gb|ABE07587.1| excinuclease ABC subunit C [Escherichia coli UTI89]
 gi|226900625|gb|EEH86884.1| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA]
 gi|294490470|gb|ADE89226.1| excinuclease ABC, C subunit [Escherichia coli IHE3034]
 gi|300458937|gb|EFK22430.1| excinuclease ABC subunit C [Escherichia coli MS 21-1]
 gi|307626610|gb|ADN70914.1| excinuclease ABC subunit C [Escherichia coli UM146]
 gi|315286614|gb|EFU46047.1| excinuclease ABC subunit C [Escherichia coli MS 110-3]
 gi|323956310|gb|EGB52053.1| excinuclease ABC [Escherichia coli H263]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++G+G +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGIGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|257066251|ref|YP_003152507.1| helicase, RecD/TraA family [Anaerococcus prevotii DSM 20548]
 gi|256798131|gb|ACV28786.1| helicase, RecD/TraA family [Anaerococcus prevotii DSM 20548]
          Length = 719

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           F+   +++G+G + A  +        +   I+  +   + ++ GI  K
Sbjct: 81  FLSSGNLKGIGKKTARAIFDVFGKDSVD--IVYNDPDKLLRVDGIGKK 126


>gi|281420173|ref|ZP_06251172.1| recombination protein RecR [Prevotella copri DSM 18205]
 gi|281405668|gb|EFB36348.1| recombination protein RecR [Prevotella copri DSM 18205]
          Length = 203

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 96  TELVESIILQNSKVIAQIPGISMKIASRIMT-ELKGKAISLS 136
            +   +++ +     +++PGI  K A R++   LK K+  + 
Sbjct: 3   QQFSSTLLEKAVAEFSKLPGIGRKTALRLVLFMLKRKSEDVE 44


>gi|218558771|ref|YP_002391684.1| excinuclease ABC subunit C [Escherichia coli S88]
 gi|226695576|sp|B7MCH0|UVRC_ECO45 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|218365540|emb|CAR03267.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli S88]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++G+G +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGIGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|195977787|ref|YP_002123031.1| DNA receptor late competence protein ComEA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974492|gb|ACG62018.1| DNA receptor late competence protein ComEA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 225

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 75  LQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ + G+GA+ A  ++    +         L++   + ++PGI  K   ++
Sbjct: 174 LQRISGIGAKRAQDIIDVRESLGGFKS---LED---LRKVPGIGAKTLEKL 218


>gi|117624056|ref|YP_852969.1| excinuclease ABC subunit C [Escherichia coli APEC O1]
 gi|189038049|sp|A1AC65|UVRC_ECOK1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115513180|gb|ABJ01255.1| excinuclease ABC subunit C [Escherichia coli APEC O1]
 gi|323952408|gb|EGB48281.1| excinuclease ABC [Escherichia coli H252]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++G+G +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGIGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|325104135|ref|YP_004273789.1| recombination protein RecR [Pedobacter saltans DSM 12145]
 gi|324972983|gb|ADY51967.1| recombination protein RecR [Pedobacter saltans DSM 12145]
          Length = 205

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
             ++  L  ++        +++PG+  K A R++  L
Sbjct: 2   NFSSKLLENAVEE-----FSKLPGVGKKTALRLVLHL 33


>gi|283769391|ref|ZP_06342290.1| comEA protein [Bulleidia extructa W1219]
 gi|283104048|gb|EFC05432.1| comEA protein [Bulleidia extructa W1219]
          Length = 151

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 106 NSKVIAQIPGISMKIASRIM 125
           + K + ++ G+  K+A RI+
Sbjct: 97  DLKELMKLKGVGKKMAQRIL 116


>gi|255327538|ref|ZP_05368605.1| excinuclease ABC subunit C [Rothia mucilaginosa ATCC 25296]
 gi|255295432|gb|EET74782.1| excinuclease ABC subunit C [Rothia mucilaginosa ATCC 25296]
          Length = 646

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 75  LQSVQGVG-ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           L  V G+G  + +  +    +  ++ ++   +    +  +PGI   +A +I+  L
Sbjct: 595 LDEVPGLGEVKRSALIKHFGSVAQIKQASAEE----LTAVPGIGPALAQKILAAL 645


>gi|330444498|ref|YP_004377484.1| recombination protein RecR [Chlamydophila pecorum E58]
 gi|328807608|gb|AEB41781.1| recombination protein RecR [Chlamydophila pecorum E58]
          Length = 220

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
              + ++PGI  K A ++  EL
Sbjct: 30  VSFLKRLPGIGFKTAEKLAFEL 51


>gi|115378513|ref|ZP_01465670.1| recombination protein RecR [Stigmatella aurantiaca DW4/3-1]
 gi|115364482|gb|EAU63560.1| recombination protein RecR [Stigmatella aurantiaca DW4/3-1]
          Length = 39

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)

Query: 93  ITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +T   L   +       +A++PGI  K A R+
Sbjct: 1   MTPDPLNRLVAQ-----LAKLPGIGEKTAQRL 27


>gi|302793005|ref|XP_002978268.1| hypothetical protein SELMODRAFT_108210 [Selaginella moellendorffii]
 gi|300154289|gb|EFJ20925.1| hypothetical protein SELMODRAFT_108210 [Selaginella moellendorffii]
          Length = 779

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
           D   ++   +H  S  +   NA+ +LV LG+  D A  A+ +         D ++ I
Sbjct: 636 DDPDIDVPYSHSSSNANVDENAVQSLVALGFSADLARKALRA---TGGRTEDAAEWI 689


>gi|324113631|gb|EGC07606.1| excinuclease ABC [Escherichia fergusonii B253]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|256750641|ref|ZP_05491527.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750481|gb|EEU63499.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1]
          Length = 615

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 17/99 (17%)

Query: 27  IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            I  P+ +     + +I +    F  T  ++             +++   L ++ G+G +
Sbjct: 523 EIDIPMTSKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572

Query: 85  VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
            A  +     +  E+  +  +++   + ++ G++ K A 
Sbjct: 573 RAKALYDAFKSIEEIKRA-SVED---LKKVEGMNEKAAQ 607


>gi|224368755|ref|YP_002602916.1| recombination protein RecR [Desulfobacterium autotrophicum HRM2]
 gi|259563692|sp|C0QAG9|RECR_DESAH RecName: Full=Recombination protein recR
 gi|223691471|gb|ACN14754.1| RecR [Desulfobacterium autotrophicum HRM2]
          Length = 199

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 18/44 (40%)

Query: 107 SKVIAQIPGISMKIASRI------------------MTELKGKA 132
            K ++ +PGI  + A R+                  + ELK K 
Sbjct: 12  IKSLSTLPGIGRRTAERLALHILHAPLHEAQTLANDILELKQKV 55


>gi|218548550|ref|YP_002382341.1| excinuclease ABC subunit C [Escherichia fergusonii ATCC 35469]
 gi|226732391|sp|B7LPF5|UVRC_ESCF3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|218356091|emb|CAQ88708.1| excinuclease UvrABC, endonuclease subunit [Escherichia fergusonii
           ATCC 35469]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|94309674|ref|YP_582884.1| helix-hairpin-helix DNA-binding, class 1 [Cupriavidus metallidurans
           CH34]
 gi|93353526|gb|ABF07615.1| conserved hypothetical protein; putative exported protein
           [Cupriavidus metallidurans CH34]
          Length = 126

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGV-LSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           LS  +      +++ + VGA + + + +  ++       +   +   +A + GI    A 
Sbjct: 7   LSLPEISLHRCMRAARRVGAAIGLSMSILAMSPAYADVDVNSADEVALATVKGIGPATAK 66

Query: 123 RIMTELKGKAISLSSV 138
           RI  E +GK  +    
Sbjct: 67  RIADE-RGKNGAFKDA 81


>gi|327355286|gb|EGE84143.1| DNA repair protein RAD1 [Ajellomyces dermatitidis ATCC 18188]
          Length = 978

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 109 VIAQIPGISMKIASRIMTE 127
           ++  +PG++ K+A R++ E
Sbjct: 918 MLQAVPGVTPKLAERLILE 936


>gi|327404619|ref|YP_004345457.1| Radical SAM domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320127|gb|AEA44619.1| Radical SAM domain protein [Fluviicola taffensis DSM 16823]
          Length = 419

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 16/109 (14%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLS---DLDRQWFMLLQSV 78
           V Y  Y P+   + L  +     L  E   +     +R +GF +     D   F+ L   
Sbjct: 252 VYYSGYVPVLADNRLPSLSSQVPLLRENRLYQADWLMRFYGFGAHEILDDSNPFLDL--- 308

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +  +   A+  L           +   + ++I ++PGI ++ A +I+
Sbjct: 309 -DIDPKFGWALRNLDLFPLD-----VNKADLEMILRVPGIGVRSAQKIV 351


>gi|325496967|gb|EGC94826.1| excinuclease ABC subunit C [Escherichia fergusonii ECD227]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|225573022|ref|ZP_03781777.1| hypothetical protein RUMHYD_01213 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039619|gb|EEG49865.1| hypothetical protein RUMHYD_01213 [Blautia hydrogenotrophica DSM
           10507]
          Length = 742

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 37/155 (23%)

Query: 1   MIGKIKGNIEGL---YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTL---------- 47
           M  KIKG I+ +    ED          Y ++  I+    L  +G F ++          
Sbjct: 1   MQEKIKGYIDHIIFRNEDN--------GYTVFVLIQGKEELTCVGTFQSISPGELIEASG 52

Query: 48  -FVETHMRQDQIRLFGFLSDLD-------RQWFMLLQS--VQGVGARVAMGVLSRITATE 97
            +++ H   DQ +    +   +       +     L S  ++G+G  +A  ++ +     
Sbjct: 53  KYIQHHTYGDQFQ----IDAYEVKVPEDTQAMERYLGSGAIKGIGPALAARIVKKFGEET 108

Query: 98  LVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
           +   I+ +  + ++++ GIS K A  I  ++  KA
Sbjct: 109 VR--IVEEEPERLSEVKGISEKKAQEIAAQITEKA 141


>gi|220935076|ref|YP_002513975.1| excinuclease ABC subunit C [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996386|gb|ACL72988.1| excinuclease ABC subunit C [Thioalkalivibrio sp. HL-EbGR7]
          Length = 609

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 47  LFVETHMRQDQIRLFGFL---SDLDRQWFML---LQSVQGVGARVAMGVLSRITATELVE 100
           L +   +R +  R   F        R        L+ + G+G +    +L        + 
Sbjct: 525 LHLIQQIRDEAHR---FAITGHRQRRAKARTASPLEQIPGMGPKRRQQLLKHFGG---LR 578

Query: 101 SIILQNSKVIAQIPGISMKIASRI 124
            +       ++++PGIS K+A +I
Sbjct: 579 GVSRAGVAELSKVPGISRKLAQQI 602


>gi|220916495|ref|YP_002491799.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954349|gb|ACL64733.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 592

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 73  MLLQSVQGVGARV--AM-GVLSRITATELVESIILQNSKVIAQIPGISMKIASRI---MT 126
           + L  V  +G +   A+   L   +  EL  +        +  + G   K   RI   + 
Sbjct: 92  LELLRVPDLGPKKIAALHAALGVASVAELEAACREG---RVRGVKGFGEKTEQRILEGIA 148

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
            L  +      ++ + ++      AH+ ++P     A+ 
Sbjct: 149 RLHAREADRRVLLAEALTAAEPLLAHLRAVPG--AEAVE 185


>gi|161485798|ref|NP_707800.3| excinuclease ABC subunit C [Shigella flexneri 2a str. 301]
 gi|161486474|ref|NP_837528.2| excinuclease ABC subunit C [Shigella flexneri 2a str. 2457T]
 gi|161984952|ref|YP_407566.2| excinuclease ABC subunit C [Shigella boydii Sb227]
 gi|281601355|gb|ADA74339.1| UvrABC system protein C [Shigella flexneri 2002017]
 gi|313650130|gb|EFS14543.1| excinuclease ABC, C subunit [Shigella flexneri 2a str. 2457T]
 gi|332756062|gb|EGJ86415.1| excinuclease ABC, C subunit [Shigella flexneri 4343-70]
 gi|332757243|gb|EGJ87580.1| excinuclease ABC, C subunit [Shigella flexneri 2747-71]
 gi|332757471|gb|EGJ87806.1| excinuclease ABC, C subunit [Shigella flexneri K-671]
 gi|332766644|gb|EGJ96848.1| excinuclease ABC, C subunit [Shigella flexneri 2930-71]
 gi|333003001|gb|EGK22555.1| excinuclease ABC, C subunit [Shigella flexneri VA-6]
 gi|333003323|gb|EGK22869.1| excinuclease ABC, C subunit [Shigella flexneri K-218]
 gi|333004170|gb|EGK23702.1| excinuclease ABC, C subunit [Shigella flexneri K-272]
 gi|333017660|gb|EGK36972.1| excinuclease ABC, C subunit [Shigella flexneri K-304]
 gi|333017783|gb|EGK37090.1| excinuclease ABC, C subunit [Shigella flexneri K-227]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|72383245|ref|YP_292600.1| hypothetical protein PMN2A_1409 [Prochlorococcus marinus str.
           NATL2A]
 gi|72003095|gb|AAZ58897.1| hypothetical protein PMN2A_1409 [Prochlorococcus marinus str.
           NATL2A]
          Length = 99

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 73  MLLQSVQGVGARVAMGVLSR--ITATELVESIILQNSKVIAQIPGIS-------MKIASR 123
             L S+ G+GA+          +T   ++ +    + +++  IPG+         K   R
Sbjct: 43  ENLTSIPGIGAKNCNNFYEAGYMTPESIISA---SDEELLT-IPGVGISFVKKLRKTLGR 98

Query: 124 I 124
           I
Sbjct: 99  I 99


>gi|70729289|ref|YP_259026.1| recombination protein RecR [Pseudomonas fluorescens Pf-5]
 gi|123656866|sp|Q4KFF7|RECR_PSEF5 RecName: Full=Recombination protein recR
 gi|68343588|gb|AAY91194.1| recombination protein RecR [Pseudomonas fluorescens Pf-5]
          Length = 200

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
              +  +PG+  K A R+  +L  +  S    + Q +S   +   H     +   +
Sbjct: 11  IDALRTLPGVGQKTAQRMALQLLERDRSGGLRLAQALSQAMEGVGHCRQCRTLTED 66


>gi|323948207|gb|EGB44195.1| excinuclease ABC [Escherichia coli H120]
          Length = 513

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 461 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 512


>gi|323174573|gb|EFZ60194.1| excinuclease ABC, C subunit [Escherichia coli LT-68]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|320184741|gb|EFW59533.1| Excinuclease ABC subunit C [Shigella flexneri CDC 796-83]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|315290293|gb|EFU49671.1| excinuclease ABC subunit C [Escherichia coli MS 153-1]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|313203106|ref|YP_004041763.1| radical sam domain protein [Paludibacter propionicigenes WB4]
 gi|312442422|gb|ADQ78778.1| Radical SAM domain protein [Paludibacter propionicigenes WB4]
          Length = 425

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           +  ++A  +            I   +   I +IPGI +K A  I+ 
Sbjct: 310 IDPKLAWALRH---PEHFPVDINKADYTQILRIPGIGVKTAKMIIV 352


>gi|331683464|ref|ZP_08384065.1| excinuclease ABC subunit C [Escherichia coli H299]
 gi|331079679|gb|EGI50876.1| excinuclease ABC subunit C [Escherichia coli H299]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|300818664|ref|ZP_07098872.1| excinuclease ABC subunit C [Escherichia coli MS 107-1]
 gi|300528836|gb|EFK49898.1| excinuclease ABC subunit C [Escherichia coli MS 107-1]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|301029363|ref|ZP_07192460.1| excinuclease ABC subunit C [Escherichia coli MS 196-1]
 gi|299877789|gb|EFI86000.1| excinuclease ABC subunit C [Escherichia coli MS 196-1]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|260448970|gb|ACX39392.1| excinuclease ABC, C subunit [Escherichia coli DH1]
 gi|315136550|dbj|BAJ43709.1| UvrABC system protein C [Escherichia coli DH1]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|260868505|ref|YP_003234907.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O111:H- str. 11128]
 gi|257764861|dbj|BAI36356.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O111:H- str. 11128]
 gi|323180837|gb|EFZ66377.1| excinuclease ABC, C subunit [Escherichia coli 1180]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|194434969|ref|ZP_03067212.1| excinuclease ABC, C subunit [Shigella dysenteriae 1012]
 gi|194416804|gb|EDX32930.1| excinuclease ABC, C subunit [Shigella dysenteriae 1012]
 gi|320178185|gb|EFW53162.1| Excinuclease ABC subunit C [Shigella boydii ATCC 9905]
 gi|332095447|gb|EGJ00468.1| excinuclease ABC, C subunit [Shigella dysenteriae 155-74]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|5353535|gb|AAD42166.1|AF106003_1 unknown [Streptomyces coelicolor A3(2)]
          Length = 71

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 20/60 (33%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
              I ++PGI  K A  +   L     +  +V       ++ +     +        +SA
Sbjct: 1   IDQICEVPGIGRKTAETVAVALARATPAAPAVNTATGEIMDDDDGAPETTADAPGEPVSA 60


>gi|78189535|ref|YP_379873.1| hypothetical protein Cag_1575 [Chlorobium chlorochromatii CaD3]
 gi|78171734|gb|ABB28830.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 420

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 21/111 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL----DR----QWFML 74
           V Y  Y P+   + L  +     L     +     +R +GF ++     +     + F  
Sbjct: 250 VYYSAYVPVSEDNRLPVLAAPPLLREHRLYQADWLLRFYGFSAEEILSEELPHLDEQFD- 308

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                    + A  +            I   +   + ++PGI +  A RI+
Sbjct: 309 --------PKTAWALRH---PEFFPVDINRADYATLLRVPGIGVTSAKRIV 348


>gi|110805886|ref|YP_689406.1| excinuclease ABC subunit C [Shigella flexneri 5 str. 8401]
 gi|30041609|gb|AAP17337.1| excinuclease ABC, subunit C [Shigella flexneri 2a str. 2457T]
 gi|56383551|gb|AAN43507.2| excinuclease ABC, subunit C [Shigella flexneri 2a str. 301]
 gi|81245030|gb|ABB65738.1| excinuclease ABC, subunit C [Shigella boydii Sb227]
 gi|110615434|gb|ABF04101.1| excinuclease ABC, subunit C [Shigella flexneri 5 str. 8401]
          Length = 588

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587


>gi|51891309|ref|YP_074000.1| excinuclease ABC subunit C [Symbiobacterium thermophilum IAM 14863]
 gi|81389794|sp|Q67T37|UVRC_SYMTH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|51854998|dbj|BAD39156.1| excinuclease ABC subunit C [Symbiobacterium thermophilum IAM 14863]
          Length = 629

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 14/94 (14%)

Query: 37  CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGVGARVAMGVL 90
            L +      LF+   +R +  R   F     R+          L  V G+G +    +L
Sbjct: 535 ELPRGSQA--LFLLQRIRDEAHR---FAITYHRKLHRRASTHSRLDDVPGIGPKRKKALL 589

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRI 124
               +   +++I   + + +AQ+PGI++++A R+
Sbjct: 590 QHFGS---LKAIREASVEEVAQVPGITLELAERV 620


>gi|187730924|ref|YP_001879701.1| excinuclease ABC subunit C [Shigella boydii CDC 3083-94]
 gi|229557864|sp|B2TXF7|UVRC_SHIB3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|187427916|gb|ACD07190.1| excinuclease ABC, C subunit [Shigella boydii CDC 3083-94]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|217970707|ref|YP_002355941.1| excinuclease ABC subunit C [Thauera sp. MZ1T]
 gi|217508034|gb|ACK55045.1| excinuclease ABC, C subunit [Thauera sp. MZ1T]
          Length = 605

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFM---LLQSVQGVGARVAMGVLSRITA 95
           G+   L +   +R +  R   F        R        L+ V GVG      +L+    
Sbjct: 518 GESAALHLIVEIRDEAHR---FAITGHRAKRAKARVGSKLEDVPGVGPSRRRNLLAAFGG 574

Query: 96  TELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            + V    +++   + ++ G+S K+A +I   L+
Sbjct: 575 LDGVREATVED---LCRVEGVSRKLAEQIHAALR 605


>gi|153004169|ref|YP_001378494.1| phosphotransferase domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027742|gb|ABS25510.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 589

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 73  MLLQSVQGVGARV--AM-GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE-- 127
           + L  V  +G R   A+   L   T +EL  +        +  + G   K   RI  +  
Sbjct: 91  LELLQVPDLGPRKIAALHAALGVGTVSELEAACRAG---RVRGVKGFGAKTEERI-LDGL 146

Query: 128 --LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
             ++ +A     ++   ++      AH+   P+    A++
Sbjct: 147 RRMRERATERRVLLADALAVGEGIVAHLRGEPAALDVAVA 186


>gi|170019749|ref|YP_001724703.1| excinuclease ABC subunit C [Escherichia coli ATCC 8739]
 gi|193066377|ref|ZP_03047425.1| excinuclease ABC, C subunit [Escherichia coli E22]
 gi|194429932|ref|ZP_03062442.1| excinuclease ABC, C subunit [Escherichia coli B171]
 gi|260844317|ref|YP_003222095.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O103:H2 str. 12009]
 gi|260855893|ref|YP_003229784.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O26:H11 str. 11368]
 gi|297518834|ref|ZP_06937220.1| excinuclease ABC subunit C [Escherichia coli OP50]
 gi|300928943|ref|ZP_07144447.1| excinuclease ABC subunit C [Escherichia coli MS 187-1]
 gi|189038050|sp|B1IZZ1|UVRC_ECOLC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169754677|gb|ACA77376.1| excinuclease ABC, C subunit [Escherichia coli ATCC 8739]
 gi|192925962|gb|EDV80608.1| excinuclease ABC, C subunit [Escherichia coli E22]
 gi|194412021|gb|EDX28333.1| excinuclease ABC, C subunit [Escherichia coli B171]
 gi|195182997|dbj|BAG66563.1| endonuclease subunit of excinuclease UvrABC [Escherichia coli
           O111:H-]
 gi|257754542|dbj|BAI26044.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O26:H11 str. 11368]
 gi|257759464|dbj|BAI30961.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O103:H2 str. 12009]
 gi|300463097|gb|EFK26590.1| excinuclease ABC subunit C [Escherichia coli MS 187-1]
 gi|313848667|emb|CAQ32384.2| excinuclease ABC, subunit C; repair of UV damage to DNA, subunit of
           UvrABC Nucleotide Excision Repair Complex [Escherichia
           coli BL21(DE3)]
 gi|323152756|gb|EFZ39028.1| excinuclease ABC, C subunit [Escherichia coli EPECa14]
 gi|332089646|gb|EGI94748.1| excinuclease ABC, C subunit [Shigella boydii 5216-82]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|331663409|ref|ZP_08364319.1| excinuclease ABC subunit C [Escherichia coli TA143]
 gi|331059208|gb|EGI31185.1| excinuclease ABC subunit C [Escherichia coli TA143]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|218134221|ref|ZP_03463025.1| hypothetical protein BACPEC_02111 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991596|gb|EEC57602.1| hypothetical protein BACPEC_02111 [Bacteroides pectinophilus ATCC
           43243]
          Length = 496

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 20/112 (17%)

Query: 24  VCYIIYCPIRTLSCLGKI--GDFCTLF--VETHMRQDQIRLFGFLS----DLDRQWFMLL 75
           V Y  +  +   S L     G+   L      +     +R +GF S       +  F +L
Sbjct: 310 VFYSAFINVNHDSSLPAQPDGEGVPLLREHRLYQADWLMRYYGFKSYELLSEQKPNFNVL 369

Query: 76  QSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                   +   A+  L           I   +   + ++PGI +  A RI+
Sbjct: 370 LD-----PKCDWAISHLELFPVE-----INRADYYTLLRVPGIGVTSARRIV 411


>gi|209695581|ref|YP_002263510.1| excinuclease ABC subunit C [Aliivibrio salmonicida LFI1238]
 gi|226698343|sp|B6EI86|UVRC_ALISL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|208009533|emb|CAQ79825.1| UvrABC system protein C (excinuclease ABC subunit C) [Aliivibrio
           salmonicida LFI1238]
          Length = 608

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ ++GVG +    +L  +    EL ++ + +    I+++PGIS  +A +I
Sbjct: 554 TLQHIEGVGPKRRQALLQYLGGLQELKKASVEE----ISKVPGISRSLAEKI 601


>gi|188585553|ref|YP_001917098.1| helix-hairpin-helix motif [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350240|gb|ACB84510.1| helix-hairpin-helix motif [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 425

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 4/31 (12%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIM 125
             E+ ++    + K++ +IPGI  K A RI+
Sbjct: 336 PQEINQA----SKKMLLRIPGIGPKSARRIL 362


>gi|170680797|ref|YP_001743331.1| excinuclease ABC subunit C [Escherichia coli SMS-3-5]
 gi|226732184|sp|B1LQU4|UVRC_ECOSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|170518515|gb|ACB16693.1| excinuclease ABC, C subunit [Escherichia coli SMS-3-5]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|26248178|ref|NP_754218.1| excinuclease ABC subunit C [Escherichia coli CFT073]
 gi|38704033|ref|NP_310678.2| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai]
 gi|89108748|ref|AP_002528.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. W3110]
 gi|90111354|ref|NP_416423.4| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157155145|ref|YP_001463216.1| excinuclease ABC subunit C [Escherichia coli E24377A]
 gi|157161384|ref|YP_001458702.1| excinuclease ABC subunit C [Escherichia coli HS]
 gi|161367590|ref|NP_288374.2| excinuclease ABC subunit C [Escherichia coli O157:H7 EDL933]
 gi|161986542|ref|YP_310160.2| excinuclease ABC subunit C [Shigella sonnei Ss046]
 gi|168790333|ref|ZP_02815340.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869]
 gi|168802973|ref|ZP_02827980.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508]
 gi|170081561|ref|YP_001730881.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188495148|ref|ZP_03002418.1| excinuclease ABC, C subunit [Escherichia coli 53638]
 gi|191173286|ref|ZP_03034816.1| excinuclease ABC, C subunit [Escherichia coli F11]
 gi|193071134|ref|ZP_03052058.1| excinuclease ABC, C subunit [Escherichia coli E110019]
 gi|194439599|ref|ZP_03071672.1| excinuclease ABC, C subunit [Escherichia coli 101-1]
 gi|208816990|ref|ZP_03258110.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045]
 gi|209400940|ref|YP_002271025.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209919334|ref|YP_002293418.1| excinuclease ABC subunit C [Escherichia coli SE11]
 gi|215487118|ref|YP_002329549.1| excinuclease ABC subunit C [Escherichia coli O127:H6 str. E2348/69]
 gi|217328731|ref|ZP_03444812.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218554496|ref|YP_002387409.1| excinuclease ABC subunit C [Escherichia coli IAI1]
 gi|218689906|ref|YP_002398118.1| excinuclease ABC subunit C [Escherichia coli ED1a]
 gi|218695519|ref|YP_002403186.1| excinuclease ABC subunit C [Escherichia coli 55989]
 gi|218699523|ref|YP_002407152.1| excinuclease ABC subunit C [Escherichia coli IAI39]
 gi|218705408|ref|YP_002412927.1| excinuclease ABC subunit C [Escherichia coli UMN026]
 gi|227885661|ref|ZP_04003466.1| excinuclease ABC subunit C [Escherichia coli 83972]
 gi|238901122|ref|YP_002926918.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli BW2952]
 gi|253773135|ref|YP_003035966.1| excinuclease ABC subunit C [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254793563|ref|YP_003078400.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. TW14359]
 gi|256017890|ref|ZP_05431755.1| excinuclease ABC subunit C [Shigella sp. D9]
 gi|256022429|ref|ZP_05436294.1| excinuclease ABC subunit C [Escherichia sp. 4_1_40B]
 gi|261227593|ref|ZP_05941874.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255823|ref|ZP_05948356.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283090|ref|YP_003499908.1| UvrABC system protein C [Escherichia coli O55:H7 str. CB9615]
 gi|293405399|ref|ZP_06649391.1| UvrABC system protein C [Escherichia coli FVEC1412]
 gi|293410272|ref|ZP_06653848.1| excinuclease ABC [Escherichia coli B354]
 gi|293415222|ref|ZP_06657865.1| excinuclease ABC [Escherichia coli B185]
 gi|293446295|ref|ZP_06662717.1| excinuclease ABC [Escherichia coli B088]
 gi|298381043|ref|ZP_06990642.1| UvrABC system protein C [Escherichia coli FVEC1302]
 gi|300822316|ref|ZP_07102457.1| excinuclease ABC subunit C [Escherichia coli MS 119-7]
 gi|300899165|ref|ZP_07117444.1| excinuclease ABC subunit C [Escherichia coli MS 198-1]
 gi|300904798|ref|ZP_07122626.1| excinuclease ABC subunit C [Escherichia coli MS 84-1]
 gi|300917354|ref|ZP_07134023.1| excinuclease ABC subunit C [Escherichia coli MS 115-1]
 gi|300925004|ref|ZP_07140928.1| excinuclease ABC subunit C [Escherichia coli MS 182-1]
 gi|300951536|ref|ZP_07165370.1| excinuclease ABC subunit C [Escherichia coli MS 116-1]
 gi|300956573|ref|ZP_07168853.1| excinuclease ABC subunit C [Escherichia coli MS 175-1]
 gi|300982240|ref|ZP_07175952.1| excinuclease ABC subunit C [Escherichia coli MS 200-1]
 gi|300993977|ref|ZP_07180624.1| excinuclease ABC subunit C [Escherichia coli MS 45-1]
 gi|301018238|ref|ZP_07182753.1| excinuclease ABC subunit C [Escherichia coli MS 69-1]
 gi|301050734|ref|ZP_07197592.1| excinuclease ABC subunit C [Escherichia coli MS 185-1]
 gi|301305253|ref|ZP_07211350.1| excinuclease ABC subunit C [Escherichia coli MS 124-1]
 gi|301327702|ref|ZP_07220908.1| excinuclease ABC subunit C [Escherichia coli MS 78-1]
 gi|301645570|ref|ZP_07245499.1| excinuclease ABC subunit C [Escherichia coli MS 146-1]
 gi|306814263|ref|ZP_07448429.1| excinuclease ABC subunit C [Escherichia coli NC101]
 gi|307138579|ref|ZP_07497935.1| excinuclease ABC subunit C [Escherichia coli H736]
 gi|307314181|ref|ZP_07593791.1| excinuclease ABC, C subunit [Escherichia coli W]
 gi|309795978|ref|ZP_07690391.1| excinuclease ABC subunit C [Escherichia coli MS 145-7]
 gi|312967114|ref|ZP_07781332.1| excinuclease ABC, C subunit [Escherichia coli 2362-75]
 gi|312973877|ref|ZP_07788049.1| excinuclease ABC, C subunit [Escherichia coli 1827-70]
 gi|331642534|ref|ZP_08343669.1| excinuclease ABC subunit C [Escherichia coli H736]
 gi|331647505|ref|ZP_08348597.1| excinuclease ABC subunit C [Escherichia coli M605]
 gi|331653319|ref|ZP_08354324.1| excinuclease ABC subunit C [Escherichia coli M718]
 gi|331657958|ref|ZP_08358920.1| excinuclease ABC subunit C [Escherichia coli TA206]
 gi|331668606|ref|ZP_08369454.1| excinuclease ABC subunit C [Escherichia coli TA271]
 gi|331677797|ref|ZP_08378472.1| excinuclease ABC subunit C [Escherichia coli H591]
 gi|332278917|ref|ZP_08391330.1| excinuclease UvrABC [Shigella sp. D9]
 gi|67474772|sp|P0A8G0|UVRC_ECOLI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|67474775|sp|P0A8G1|UVRC_ECOL6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|67474776|sp|P0A8G2|UVRC_ECO57 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367838|sp|Q3Z2T7|UVRC_SHISS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038047|sp|A7ZN37|UVRC_ECO24 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038048|sp|A8A1B5|UVRC_ECOHS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226695577|sp|B7NS11|UVRC_ECO7I RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226695578|sp|B7M356|UVRC_ECO8A RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226695579|sp|B7NBQ8|UVRC_ECOLU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226698349|sp|B5YRT7|UVRC_ECO5E RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226698350|sp|B6I0W0|UVRC_ECOSE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229558027|sp|B1X671|UVRC_ECODH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764931|sp|B7UST2|UVRC_ECO27 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764932|sp|B7L8S5|UVRC_ECO55 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764933|sp|B7MWA0|UVRC_ECO81 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|259710338|sp|C4ZQJ1|UVRC_ECOBW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|26108582|gb|AAN80785.1|AE016762_38 Excinuclease ABC subunit C [Escherichia coli CFT073]
 gi|1736572|dbj|BAA15733.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K12 substr. W3110]
 gi|87081999|gb|AAC74980.2| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157067064|gb|ABV06319.1| excinuclease ABC, C subunit [Escherichia coli HS]
 gi|157077175|gb|ABV16883.1| excinuclease ABC, C subunit [Escherichia coli E24377A]
 gi|169889396|gb|ACB03103.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188490347|gb|EDU65450.1| excinuclease ABC, C subunit [Escherichia coli 53638]
 gi|189370222|gb|EDU88638.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869]
 gi|189375231|gb|EDU93647.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508]
 gi|190906403|gb|EDV66012.1| excinuclease ABC, C subunit [Escherichia coli F11]
 gi|192955529|gb|EDV86008.1| excinuclease ABC, C subunit [Escherichia coli E110019]
 gi|194421508|gb|EDX37522.1| excinuclease ABC, C subunit [Escherichia coli 101-1]
 gi|208731333|gb|EDZ80022.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045]
 gi|209162340|gb|ACI39773.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209912593|dbj|BAG77667.1| excinuclease ABC subunit C [Escherichia coli SE11]
 gi|215265190|emb|CAS09579.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O127:H6
           str. E2348/69]
 gi|217318078|gb|EEC26505.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218352251|emb|CAU98007.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli 55989]
 gi|218361264|emb|CAQ98848.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli IAI1]
 gi|218369509|emb|CAR17276.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli IAI39]
 gi|218427470|emb|CAR08366.2| excinuclease UvrABC, endonuclease subunit [Escherichia coli ED1a]
 gi|218432505|emb|CAR13398.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli UMN026]
 gi|222033654|emb|CAP76395.1| UvrABC system protein C [Escherichia coli LF82]
 gi|227837234|gb|EEJ47700.1| excinuclease ABC subunit C [Escherichia coli 83972]
 gi|238861047|gb|ACR63045.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli BW2952]
 gi|253324179|gb|ACT28781.1| excinuclease ABC, C subunit [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254592963|gb|ACT72324.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7
           str. TW14359]
 gi|284921826|emb|CBG34899.1| UvrABC system protein C [Escherichia coli 042]
 gi|290762963|gb|ADD56924.1| UvrABC system protein C [Escherichia coli O55:H7 str. CB9615]
 gi|291323125|gb|EFE62553.1| excinuclease ABC [Escherichia coli B088]
 gi|291427607|gb|EFF00634.1| UvrABC system protein C [Escherichia coli FVEC1412]
 gi|291432870|gb|EFF05849.1| excinuclease ABC [Escherichia coli B185]
 gi|291470740|gb|EFF13224.1| excinuclease ABC [Escherichia coli B354]
 gi|298278485|gb|EFI19999.1| UvrABC system protein C [Escherichia coli FVEC1302]
 gi|300297551|gb|EFJ53936.1| excinuclease ABC subunit C [Escherichia coli MS 185-1]
 gi|300307310|gb|EFJ61830.1| excinuclease ABC subunit C [Escherichia coli MS 200-1]
 gi|300316620|gb|EFJ66404.1| excinuclease ABC subunit C [Escherichia coli MS 175-1]
 gi|300357224|gb|EFJ73094.1| excinuclease ABC subunit C [Escherichia coli MS 198-1]
 gi|300399825|gb|EFJ83363.1| excinuclease ABC subunit C [Escherichia coli MS 69-1]
 gi|300403312|gb|EFJ86850.1| excinuclease ABC subunit C [Escherichia coli MS 84-1]
 gi|300406423|gb|EFJ89961.1| excinuclease ABC subunit C [Escherichia coli MS 45-1]
 gi|300415400|gb|EFJ98710.1| excinuclease ABC subunit C [Escherichia coli MS 115-1]
 gi|300418839|gb|EFK02150.1| excinuclease ABC subunit C [Escherichia coli MS 182-1]
 gi|300449211|gb|EFK12831.1| excinuclease ABC subunit C [Escherichia coli MS 116-1]
 gi|300525199|gb|EFK46268.1| excinuclease ABC subunit C [Escherichia coli MS 119-7]
 gi|300839459|gb|EFK67219.1| excinuclease ABC subunit C [Escherichia coli MS 124-1]
 gi|300845746|gb|EFK73506.1| excinuclease ABC subunit C [Escherichia coli MS 78-1]
 gi|301076102|gb|EFK90908.1| excinuclease ABC subunit C [Escherichia coli MS 146-1]
 gi|305852422|gb|EFM52873.1| excinuclease ABC subunit C [Escherichia coli NC101]
 gi|306906150|gb|EFN36668.1| excinuclease ABC, C subunit [Escherichia coli W]
 gi|307553926|gb|ADN46701.1| excinuclease ABC subunit C [Escherichia coli ABU 83972]
 gi|308120428|gb|EFO57690.1| excinuclease ABC subunit C [Escherichia coli MS 145-7]
 gi|309702208|emb|CBJ01524.1| UvrABC system protein C [Escherichia coli ETEC H10407]
 gi|310332472|gb|EFP99707.1| excinuclease ABC, C subunit [Escherichia coli 1827-70]
 gi|312288578|gb|EFR16480.1| excinuclease ABC, C subunit [Escherichia coli 2362-75]
 gi|312946505|gb|ADR27332.1| excinuclease ABC subunit C [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061213|gb|ADT75540.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli W]
 gi|315257257|gb|EFU37225.1| excinuclease ABC subunit C [Escherichia coli MS 85-1]
 gi|315296528|gb|EFU55825.1| excinuclease ABC subunit C [Escherichia coli MS 16-3]
 gi|315617865|gb|EFU98463.1| excinuclease ABC, C subunit [Escherichia coli 3431]
 gi|320176084|gb|EFW51152.1| Excinuclease ABC subunit C [Shigella dysenteriae CDC 74-1112]
 gi|320191886|gb|EFW66533.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. EC1212]
 gi|320194375|gb|EFW69006.1| Excinuclease ABC subunit C [Escherichia coli WV_060327]
 gi|320198606|gb|EFW73206.1| Excinuclease ABC subunit C [Escherichia coli EC4100B]
 gi|320641760|gb|EFX11148.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. G5101]
 gi|320647120|gb|EFX15953.1| excinuclease ABC subunit C [Escherichia coli O157:H- str. 493-89]
 gi|320652403|gb|EFX20701.1| excinuclease ABC subunit C [Escherichia coli O157:H- str. H 2687]
 gi|320658005|gb|EFX25767.1| excinuclease ABC subunit C [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658577|gb|EFX26271.1| excinuclease ABC subunit C [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668475|gb|EFX35302.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. LSU-61]
 gi|323378210|gb|ADX50478.1| excinuclease ABC, C subunit [Escherichia coli KO11]
 gi|323937188|gb|EGB33468.1| excinuclease ABC [Escherichia coli E1520]
 gi|323940424|gb|EGB36615.1| excinuclease ABC [Escherichia coli E482]
 gi|323961962|gb|EGB57561.1| excinuclease ABC [Escherichia coli H489]
 gi|323972724|gb|EGB67925.1| excinuclease ABC [Escherichia coli TA007]
 gi|323977907|gb|EGB72993.1| excinuclease ABC [Escherichia coli TW10509]
 gi|324007283|gb|EGB76502.1| excinuclease ABC subunit C [Escherichia coli MS 57-2]
 gi|324013556|gb|EGB82775.1| excinuclease ABC subunit C [Escherichia coli MS 60-1]
 gi|324017948|gb|EGB87167.1| excinuclease ABC subunit C [Escherichia coli MS 117-3]
 gi|324118967|gb|EGC12856.1| excinuclease ABC [Escherichia coli E1167]
 gi|326342319|gb|EGD66100.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. 1044]
 gi|326344826|gb|EGD68573.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. 1125]
 gi|330911720|gb|EGH40230.1| excinuclease ABC subunit C [Escherichia coli AA86]
 gi|331039332|gb|EGI11552.1| excinuclease ABC subunit C [Escherichia coli H736]
 gi|331043229|gb|EGI15367.1| excinuclease ABC subunit C [Escherichia coli M605]
 gi|331049417|gb|EGI21489.1| excinuclease ABC subunit C [Escherichia coli M718]
 gi|331056206|gb|EGI28215.1| excinuclease ABC subunit C [Escherichia coli TA206]
 gi|331063800|gb|EGI35711.1| excinuclease ABC subunit C [Escherichia coli TA271]
 gi|331074257|gb|EGI45577.1| excinuclease ABC subunit C [Escherichia coli H591]
 gi|332101269|gb|EGJ04615.1| excinuclease UvrABC [Shigella sp. D9]
 gi|332343638|gb|AEE56972.1| excinuclease ABC, C subunit UvrC [Escherichia coli UMNK88]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|291514455|emb|CBK63665.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif
           [Alistipes shahii WAL 8301]
          Length = 419

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 17/110 (15%)

Query: 24  VCYIIYCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQS 77
           V Y  + P+      L  + D   L  E   +     +R +GF ++    ++   + L  
Sbjct: 252 VYYSGFIPVNPYDKRLPAL-DKAPLVRENRLYQADWLMRFYGFRAEEIADEQTPRLDL-- 308

Query: 78  VQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
              +  ++A  + +      ++  +    + + + ++PGI +K A R++ 
Sbjct: 309 --DIDPKLAWALRNPAFFPVDVNRA----DYEALLRVPGIGVKSA-RLIV 351


>gi|253746350|gb|EET01702.1| Hypothetical protein GL50581_1058 [Giardia intestinalis ATCC 50581]
          Length = 1500

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           A+G+   ++  +L ++I   N  ++  + G+  K A
Sbjct: 373 AVGIFQALSRDDLADAIEQGNKAILDNLKGVGSKAA 408


>gi|43290|emb|CAA27329.1| unnamed protein product [Escherichia coli]
          Length = 588

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587


>gi|25300658|pir||C90960 excinuclease ABC subunit C [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|25300671|pir||D85808 excinuclease ABC, chain C - Escherichia coli (strain O157:H7,
           substrain EDL933)
 gi|12516011|gb|AAG56928.1|AE005414_5 excinuclease ABC, subunit C; repair of UV damage to DNA
           [Escherichia coli O157:H7 str. EDL933]
 gi|13362119|dbj|BAB36074.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai]
 gi|73855218|gb|AAZ87925.1| excinuclease ABC, subunit C [Shigella sonnei Ss046]
 gi|209767058|gb|ACI81841.1| excinuclease ABC subunit C [Escherichia coli]
 gi|209767060|gb|ACI81842.1| excinuclease ABC subunit C [Escherichia coli]
 gi|209767062|gb|ACI81843.1| excinuclease ABC subunit C [Escherichia coli]
 gi|209767064|gb|ACI81844.1| excinuclease ABC subunit C [Escherichia coli]
 gi|209767066|gb|ACI81845.1| excinuclease ABC subunit C [Escherichia coli]
 gi|281178975|dbj|BAI55305.1| excinuclease ABC subunit C [Escherichia coli SE15]
          Length = 588

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587


>gi|254161967|ref|YP_003045075.1| excinuclease ABC subunit C [Escherichia coli B str. REL606]
 gi|253973868|gb|ACT39539.1| excinuclease ABC subunit C [Escherichia coli B str. REL606]
 gi|253978062|gb|ACT43732.1| excinuclease ABC subunit C [Escherichia coli BL21(DE3)]
 gi|323158604|gb|EFZ44618.1| excinuclease ABC, C subunit [Escherichia coli E128010]
          Length = 588

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587


>gi|124027693|ref|YP_001013013.1| hypothetical protein Hbut_0815 [Hyperthermus butylicus DSM 5456]
 gi|123978387|gb|ABM80668.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 273

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 110 IAQIPGISMKIASRIMTELKGK 131
           + ++PGI  + A RI+ E + K
Sbjct: 218 LLRVPGIGPRTARRIV-EFREK 238


>gi|298249593|ref|ZP_06973397.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963]
 gi|297547597|gb|EFH81464.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963]
          Length = 757

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++G+G   A  +++      L   II Q S  + ++PGI    A +I
Sbjct: 110 IKGIGPVTAKRIVAHFQLDTLE--IIEQASARLVEVPGIGASRAQKI 154


>gi|258591953|emb|CBE68258.1| exported protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 134

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 102 IILQNSKVIAQIPGISMKIASRIM 125
           I   +   +  +PGI   +A RI+
Sbjct: 75  INHADIAALQTLPGIGPTLAQRII 98


>gi|283785658|ref|YP_003365523.1| UvrABC system protein C [Citrobacter rodentium ICC168]
 gi|282949112|emb|CBG88719.1| UvrABC system protein C [Citrobacter rodentium ICC168]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|226947391|ref|YP_002802482.1| helicase, RecD/TraA family [Clostridium botulinum A2 str. Kyoto]
 gi|226841096|gb|ACO83762.1| helicase, RecD/TraA family [Clostridium botulinum A2 str. Kyoto]
          Length = 744

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           + G+G   A  ++ +     L   I+  N + + +I GI  K   
Sbjct: 88  ISGIGPVTAKKIVKKFGEETLN--ILDSNIERLTEIEGIGKKKIE 130


>gi|161502932|ref|YP_001570044.1| excinuclease ABC subunit C [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864279|gb|ABX20902.1| hypothetical protein SARI_00991 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 554 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 606


>gi|114565608|ref|YP_752762.1| recombination protein RecR [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122319210|sp|Q0B0W3|RECR_SYNWW RecName: Full=Recombination protein recR
 gi|114336543|gb|ABI67391.1| DNA replication and repair protein RecR [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 197

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
              + ++PGI  K A R+  
Sbjct: 11  IDQLLKLPGIGPKTAQRLAL 30


>gi|325125542|gb|ADY84872.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 150

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 106 NSKVIAQIPGISMKIASRIMTELKG 130
           + +++  IPGI    A RI++EL  
Sbjct: 9   DLEILTSIPGIGENTALRIISELGD 33


>gi|212634564|ref|YP_002311089.1| recombination protein RecR [Shewanella piezotolerans WP3]
 gi|226739008|sp|B8CN00|RECR_SHEPW RecName: Full=Recombination protein recR
 gi|212556048|gb|ACJ28502.1| Recombination protein RecR [Shewanella piezotolerans WP3]
          Length = 199

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL++         +  +PG+  K A R+  +L  +     S +   +     E  H  
Sbjct: 7   VDELIQ--------SLKCLPGVGPKSAQRMAFQLLERDRKAGSKLADSLGKAMSEVGHCQ 58

Query: 155 SMPSFAIN 162
           S  +F   
Sbjct: 59  SCRTFTEE 66


>gi|167041264|gb|ABZ06020.1| putative Toprim domain protein [uncultured marine microorganism
           HF4000_005D21]
 gi|167045769|gb|ABZ10415.1| putative Toprim domain protein [uncultured marine bacterium
           HF4000_APKG3108]
          Length = 201

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146
            K+IA++PG+  K A RI+ +L      L+  +   ++ V
Sbjct: 13  IKIIAKLPGLGPKSAKRIVLKLINNREELAKPLVNTLAQV 52


>gi|330980421|gb|EGH78524.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|319956177|ref|YP_004167440.1| excinuclease ABC subunit c [Nitratifractor salsuginis DSM 16511]
 gi|319418581|gb|ADV45691.1| Excinuclease ABC subunit C [Nitratifractor salsuginis DSM 16511]
          Length = 600

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 14/94 (14%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           L  L ++ D    +  T+ R             DRQ    L   +G+G      +L    
Sbjct: 520 LQWLQRLRDEAHRYAITYHRNK-------KRREDRQVA--LLQTKGIGPATLKKLLDCFG 570

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
                ++I   +   + ++  +   +A R++  L
Sbjct: 571 T---FKAIEKADFNTLQKV--VGPTMAKRLIESL 599


>gi|182414624|ref|YP_001819690.1| phosphotransferase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177841838|gb|ACB76090.1| PHP domain protein [Opitutus terrae PB90-1]
          Length = 621

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            L  + GVG +    +   L  +    L  +        +A   G   K   +I+  +K 
Sbjct: 93  ELLQIPGVGPKKIKVLHEQLGVVDIASLAAACADGRVAALA---GFGAKTQEKIVAGIKN 149

Query: 131 K 131
           +
Sbjct: 150 R 150


>gi|170726148|ref|YP_001760174.1| recombination protein RecR [Shewanella woodyi ATCC 51908]
 gi|238688704|sp|B1KNK2|RECR_SHEWM RecName: Full=Recombination protein recR
 gi|169811495|gb|ACA86079.1| recombination protein RecR [Shewanella woodyi ATCC 51908]
          Length = 199

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL++         +  +PG+  K A R+  +L  +       +   +S    +  H  
Sbjct: 7   VDELIQ--------SLKCLPGVGPKSAQRMAFQLLERDRKAGQSLASALSSAMSDVGHCQ 58

Query: 155 SMPSFAINAI 164
           +  +F    +
Sbjct: 59  ACRTFTEETL 68


>gi|330970024|gb|EGH70090.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|302189905|ref|ZP_07266578.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae 642]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|296284355|ref|ZP_06862353.1| excinuclease ABC subunit C [Citromicrobium bathyomarinum JL354]
          Length = 651

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  + G+G      +L        V +  L +   + + PGIS  +A +I
Sbjct: 598 LDEIPGIGPARKRALLLHFGTAGKVRAAALDD---LKRAPGISDAVAQQI 644


>gi|59712233|ref|YP_205009.1| excinuclease ABC subunit C [Vibrio fischeri ES114]
 gi|75353751|sp|Q5E4C5|UVRC_VIBF1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|59480334|gb|AAW86121.1| excinuclease UvrABC, endonuclease subunit [Vibrio fischeri ES114]
          Length = 608

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ GVG +    +L  +    EL  + + +    IA++PGIS  +A +I
Sbjct: 554 TLQNIDGVGPKRRQALLQYLGGLQELKSASVEE----IAKVPGISHSLAEKI 601


>gi|330808751|ref|YP_004353213.1| uvrABC system protein C [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376859|gb|AEA68209.1| uvrABC system protein C [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIEE----IAKAPGISKKLAESI 600


>gi|146296053|ref|YP_001179824.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409629|gb|ABP66633.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 415

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL--DRQWFMLLQSVQG 80
           V Y  Y P+     + K+     L     +     IR++ F +D   ++   + L+    
Sbjct: 239 VYYSAYTPVNEDPRILKVEKPPLLREHRLYQADWLIRVYNFSADELFEKDENLDLE---- 294

Query: 81  VGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           V  +V  A+  L +         +   N + + ++PGI +K A RI+
Sbjct: 295 VDPKVMWALRHLDKFPVE-----VNKANYEELIRVPGIGIKSARRII 336


>gi|317121677|ref|YP_004101680.1| PHP domain protein [Thermaerobacter marianensis DSM 12885]
 gi|315591657|gb|ADU50953.1| PHP domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 675

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 31/132 (23%)

Query: 75  LQSVQGVGARVA------MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           LQ++ G+G  +A          S     EL   +     + +  IPG+  + A+R+  EL
Sbjct: 74  LQTLPGIGPAIAGKIRDFYATGSTRLLDELRRRVPAG-VQNLLAIPGLGPRTAARLYHEL 132

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT---AVVSVL 185
                            ++   A   ++       ++AL  LG  + +A     A+  + 
Sbjct: 133 ----------------GIDSPAALRDALDDGR---VAALPGLG--EARARKLREALDRLD 171

Query: 186 KKEKNIADDSQI 197
           ++   +     +
Sbjct: 172 REGPRLTLGEAL 183


>gi|167036996|ref|YP_001664574.1| excinuclease ABC subunit C [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320115414|ref|YP_004185573.1| excinuclease ABC subunit C [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|229557871|sp|B0K791|UVRC_THEP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|166855830|gb|ABY94238.1| excinuclease ABC, C subunit [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928505|gb|ADV79190.1| excinuclease ABC, C subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 615

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 17/99 (17%)

Query: 27  IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            I  P+ +     + +I +    F  T  ++             +++   L ++ G+G +
Sbjct: 523 EIDIPMTSKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572

Query: 85  VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
            A  +     +  E+  +  +++   + ++ G++ K A 
Sbjct: 573 RAKALYDAFKSIEEIKRA-SVED---LKKVEGMNEKAAQ 607


>gi|66046127|ref|YP_235968.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae
           B728a]
 gi|76803829|sp|Q52377|UVRC_PSEU2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|63256834|gb|AAY37930.1| Excinuclease ABC, C subunit [Pseudomonas syringae pv. syringae
           B728a]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|313902765|ref|ZP_07836162.1| DNA replication and repair protein RecR [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466885|gb|EFR62402.1| DNA replication and repair protein RecR [Thermaerobacter
           subterraneus DSM 13965]
          Length = 199

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 107 SKVIAQIPGISMKIASRI 124
              + ++PGI  K A R+
Sbjct: 11  IAELEKLPGIGPKTAQRL 28


>gi|281358694|ref|ZP_06245171.1| helicase, RecD/TraA family [Victivallis vadensis ATCC BAA-548]
 gi|281314820|gb|EFA98856.1| helicase, RecD/TraA family [Victivallis vadensis ATCC BAA-548]
          Length = 734

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           + G+G + A  ++       LV  ++   +K + ++PGI  K A
Sbjct: 97  IPGIGKKTASLIVDYFGDQTLV--VLDNFAKRLEEVPGIGKKKA 138


>gi|206895531|ref|YP_002246756.1| endonuclease III [Coprothermobacter proteolyticus DSM 5265]
 gi|206738148|gb|ACI17226.1| endonuclease III [Coprothermobacter proteolyticus DSM 5265]
          Length = 209

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 23/82 (28%)

Query: 105 QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            N + + ++PG+  K AS ++               Q    V++    + +         
Sbjct: 98  NNVEDLTELPGVGKKTASMVVL----------GAFGQPAVVVDRHVLRVLNR-------- 139

Query: 165 SALVNLGYGQDQATTAVVSVLK 186
                LG+    A  A   + K
Sbjct: 140 -----LGFSFKDADVAEEEIRK 156


>gi|255034995|ref|YP_003085616.1| Radical SAM domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254947751|gb|ACT92451.1| Radical SAM domain protein [Dyadobacter fermentans DSM 18053]
          Length = 418

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDLDRQWFMLLQSVQ-- 79
           V Y  Y PI   S L  IG    L  E   +     +R +GF          +L  V   
Sbjct: 252 VYYSGYIPISNDSRLPVIGSQPPLIRENRLYQADWLMRFYGFKVQE------ILNDVHPN 305

Query: 80  ---GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
               V  ++  A+  L +         I   +  +I ++PGI +  A +I+
Sbjct: 306 LEADVDPKLSWALRNLDQFPVD-----INTADYYMILRVPGIGVASALKIV 351


>gi|289581743|ref|YP_003480209.1| excinuclease ABC, C subunit [Natrialba magadii ATCC 43099]
 gi|289531296|gb|ADD05647.1| excinuclease ABC, C subunit [Natrialba magadii ATCC 43099]
          Length = 604

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 21/107 (19%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL-----SDLDRQWFMLLQSVQGVG 82
           +  P R LS      D   L +   +R +  R   F      +  D     +L  V G+G
Sbjct: 509 VIIPDRQLSW---PSDAPHLHLLQRVRDESHR---FAVQYHQTLRD-DVRTVLDDVPGIG 561

Query: 83  ARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIA----SRI 124
                 +L R  +   + E+  +++   +  + G+  K A     R+
Sbjct: 562 PETRKRLLGRFGSVENVREA-SVED---LQSVSGVGEKTARTVKERL 604


>gi|200390430|ref|ZP_03217041.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199602875|gb|EDZ01421.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|254168497|ref|ZP_04875341.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|197622552|gb|EDY35123.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
          Length = 221

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           SD + + +  L S+  +G ++A  +L    +   +E I   N   + ++ GI  K A +I
Sbjct: 161 SDEEWKIY-ALSSLPYIGEKIAKALLEHFGS---IEKIARANIVELKKVEGIGNKKARQI 216


>gi|116514410|ref|YP_813316.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093725|gb|ABJ58878.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 150

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 106 NSKVIAQIPGISMKIASRIMTELKG 130
           + +++  IPGI    A RI++EL  
Sbjct: 9   DLEILTSIPGIGENTALRIISELGD 33


>gi|71083215|ref|YP_265934.1| recR-like protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762355|ref|ZP_01264320.1| recR-like protein [Candidatus Pelagibacter ubique HTCC1002]
 gi|123647013|sp|Q4FNA8|RECR_PELUB RecName: Full=Recombination protein recR
 gi|71062328|gb|AAZ21331.1| recR-like protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718157|gb|EAS84807.1| recR-like protein [Candidatus Pelagibacter ubique HTCC1002]
          Length = 203

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            K+I+++PG+  K A RI+ +L
Sbjct: 11  IKLISKLPGLGPKSAKRIVLKL 32


>gi|330988831|gb|EGH86934.1| excinuclease ABC subunit C [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331008144|gb|EGH88201.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|325000598|ref|ZP_08121710.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 325

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 23/125 (18%)

Query: 62  GF---LSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVE------------SIILQ 105
           GF   ++  DR  F L+   V  +  +  +  L RI   E+ +            + +  
Sbjct: 153 GFQVLITTGDRDAFQLVTEDVTVLYPKRGVSDLGRIDPAEVDKRYGLTPTQYPDFAALRG 212

Query: 106 NSK-VIAQIPGISMKIASRIM------TELKGKAISLSSVVQQDMSCVNKEQAHICSMPS 158
           +    +  IPG+  K A++ +       EL  +   +      ++            +  
Sbjct: 213 DPSDNLPSIPGVGEKTAAKWVREFGSLAELTDRVDEVKGKAGDNLRANLANVLLNRQLTE 272

Query: 159 FAINA 163
              + 
Sbjct: 273 LVRDV 277


>gi|320324326|gb|EFW80405.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320328551|gb|EFW84553.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|294496288|ref|YP_003542781.1| DNA mismatch repair protein MutS [Methanohalophilus mahii DSM 5219]
 gi|292667287|gb|ADE37136.1| DNA mismatch repair protein MutS domain protein [Methanohalophilus
           mahii DSM 5219]
          Length = 700

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATE-LVESIILQNSKVIAQIPGISMKIASRIMTELK 129
              L     +G ++A   +S     E  + +I+  +   I++I G+  + A  ++ +++
Sbjct: 1   MQSLVDAPRIGEKMAQRFISHFGCEEDAMAAILRGDIASISEIEGVGRRYAISLVHDVR 59


>gi|289650302|ref|ZP_06481645.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330867008|gb|EGH01717.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330890124|gb|EGH22785.1| excinuclease ABC subunit C [Pseudomonas syringae pv. mori str.
           301020]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|89889524|ref|ZP_01201035.1| radical SAM domain protein [Flavobacteria bacterium BBFL7]
 gi|89517797|gb|EAS20453.1| radical SAM domain protein [Flavobacteria bacterium BBFL7]
          Length = 420

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 26/114 (22%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLD--------RQWFM 73
           V Y  Y P+   S L  IG    +  E  + Q    L  +GF +  +             
Sbjct: 253 VYYSGYIPVANDSRLPAIGTEVPMMRENRLYQTDWLLRFYGF-NVQEILNDKHQNLDM-- 309

Query: 74  LLQSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                  +  ++  A+  L +         I   + ++IA++PGI M+  S+I+
Sbjct: 310 ------DIDPKLSWALRNLDQFPVD-----INKADKRMIARVPGIGMRSVSKII 352


>gi|56413139|ref|YP_150214.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362065|ref|YP_002141702.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81360622|sp|Q5PI10|UVRC_SALPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229557862|sp|B5BGC1|UVRC_SALPK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56127396|gb|AAV76902.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093542|emb|CAR59004.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|16760892|ref|NP_456509.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141416|ref|NP_804758.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053517|ref|ZP_03346395.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426360|ref|ZP_03359110.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580419|ref|ZP_03362245.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650332|ref|ZP_03380385.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289824068|ref|ZP_06543666.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|21264111|sp|Q8Z5T3|UVRC_SALTI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|25300672|pir||AD0749 excinuclease ABC chain C STY2154 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503189|emb|CAD05695.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137043|gb|AAO68607.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|298486859|ref|ZP_07004915.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158726|gb|EFH99790.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|71733411|ref|YP_274534.1| excinuclease ABC subunit C [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|92058693|sp|Q48J96|UVRC_PSE14 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71553964|gb|AAZ33175.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 607

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|322616940|gb|EFY13848.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618180|gb|EFY15072.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625850|gb|EFY22669.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626302|gb|EFY23112.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632717|gb|EFY29462.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639059|gb|EFY35752.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640500|gb|EFY37153.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645991|gb|EFY42508.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649888|gb|EFY46309.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655496|gb|EFY51804.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660274|gb|EFY56512.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662955|gb|EFY59162.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668140|gb|EFY64299.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674100|gb|EFY70194.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675547|gb|EFY71621.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683041|gb|EFY79057.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686735|gb|EFY82713.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195376|gb|EFZ80556.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199267|gb|EFZ84362.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204432|gb|EFZ89438.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207522|gb|EFZ92470.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211847|gb|EFZ96678.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217507|gb|EGA02226.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223585|gb|EGA07900.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231529|gb|EGA15642.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235972|gb|EGA20051.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240542|gb|EGA24585.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245434|gb|EGA29434.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250204|gb|EGA34096.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323255488|gb|EGA39249.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262085|gb|EGA45648.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266208|gb|EGA49698.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270683|gb|EGA54124.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|168239181|ref|ZP_02664239.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194738201|ref|YP_002114979.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|229557863|sp|B4TYW7|UVRC_SALSV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194713703|gb|ACF92924.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288075|gb|EDY27462.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|161613493|ref|YP_001587458.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|189038085|sp|A9MU69|UVRC_SALPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|161362857|gb|ABX66625.1| hypothetical protein SPAB_01210 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|29831872|ref|NP_826506.1| exodeoxyribonuclease V [Streptomyces avermitilis MA-4680]
 gi|29608989|dbj|BAC73041.1| putative exodeoxyribonuclease V [Streptomyces avermitilis MA-4680]
          Length = 758

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  +        L   II +  K + ++PG+  K   +I
Sbjct: 108 VKGIGPVFADRITQHFGLDTLQ--IIEEEPKRLIEVPGLGPKRTKKI 152


>gi|327473326|gb|EGF18746.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK408]
          Length = 445

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179
           A + + +LK +     ++  +     N   A          + ++ L  LGY  +  A  
Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241

Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207
             V+ + K  K+ A   + IIRLA  L+++  
Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQSLDS 273


>gi|282162751|ref|YP_003355136.1| family X DNA polymerase [Methanocella paludicola SANAE]
 gi|282155065|dbj|BAI60153.1| family X DNA polymerase [Methanocella paludicola SANAE]
          Length = 568

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 70  QWFMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           + F ++  V G+G + A+ V   L   T  E   +  +     I ++ G+  K A R + 
Sbjct: 89  ELFEIM-GVPGIGRKTAIKVHKALGVTTVEEFERAARMH---RIRKLKGMGEK-AERRVL 143

Query: 127 E 127
           +
Sbjct: 144 D 144


>gi|193214870|ref|YP_001996069.1| recombination protein RecR [Chloroherpeton thalassium ATCC 35110]
 gi|229890141|sp|B3QYJ4|RECR_CHLT3 RecName: Full=Recombination protein recR
 gi|193088347|gb|ACF13622.1| recombination protein RecR [Chloroherpeton thalassium ATCC 35110]
          Length = 205

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 110 IAQIPGISMKIASR----IMTELKGKAISLSSVV 139
            A++PGI  K A R    I+ E K K  SL+  +
Sbjct: 15  FAKLPGIGRKTAQRLTMFILHEEKEKVESLAQAL 48


>gi|204931075|ref|ZP_03221901.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320119|gb|EDZ05324.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|197248145|ref|YP_002146077.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|226698355|sp|B5F2U1|UVRC_SALA4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|197211848|gb|ACH49245.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|108758594|ref|YP_630174.1| recombination protein RecR [Myxococcus xanthus DK 1622]
 gi|123247980|sp|Q1DAZ9|RECR_MYXXD RecName: Full=Recombination protein recR
 gi|108462474|gb|ABF87659.1| recombination protein RecR [Myxococcus xanthus DK 1622]
          Length = 197

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)

Query: 93  ITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +T   L   +       +A++PGI  K A R+
Sbjct: 1   MTPDPLNRLVAQ-----LAKLPGIGEKTAQRL 27


>gi|197334859|ref|YP_002156447.1| excinuclease ABC, C subunit [Vibrio fischeri MJ11]
 gi|197316349|gb|ACH65796.1| excinuclease ABC, C subunit [Vibrio fischeri MJ11]
          Length = 587

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ GVG +    +L  +    EL  + + +    IA++PGIS  +A +I
Sbjct: 533 TLQNIDGVGPKRRQALLQYLGGLQELKSASVEE----IAKVPGISHSLAEKI 580


>gi|149198118|ref|ZP_01875165.1| excinuclease ABC subunit C [Lentisphaera araneosa HTCC2155]
 gi|149138720|gb|EDM27126.1| excinuclease ABC subunit C [Lentisphaera araneosa HTCC2155]
          Length = 486

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 15/87 (17%)

Query: 51  THMRQDQIRLFGFLSDLDRQWFM------LLQSVQGVGARVAMGVLSRI-TATELVESII 103
            H+R +  R   F  +  RQ         LL  + G+G +  M +L+   +  E+ ++  
Sbjct: 405 QHLRDESHR---FAINFHRQLRRKQVANSLLDDIPGIGKKRKMTLLNHFGSVREIRKA-S 460

Query: 104 LQNSKVIAQIPGISMKIASRIMTE-LK 129
            Q+      +PG+  K A  ++ E LK
Sbjct: 461 PQDIA--EAVPGLGEKSA-HMILEYLK 484


>gi|313158744|gb|EFR58131.1| putative DNA modification/repair radical SAM protein [Alistipes sp.
           HGB5]
          Length = 419

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 24  VCYIIYCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQS 77
           V Y  + P+      L  + D   L  E   +     +R +GF ++    ++   + L+ 
Sbjct: 252 VYYSGFIPVNPYDKRLPAL-DKAPLVRENRLYQADWLMRFYGFRAEEIADEQTPRLDLE- 309

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
              +  ++A  +            +   + + + ++PG+ +K A R++ 
Sbjct: 310 ---IDPKLAWALRH---PEFFPVDVNRADYEALLRVPGVGVKSA-RLIV 351


>gi|256851001|ref|ZP_05556390.1| RNA-binding protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661213|ref|ZP_05862127.1| RNA-binding protein [Lactobacillus jensenii 115-3-CHN]
 gi|282932046|ref|ZP_06337504.1| conserved virulence factor B [Lactobacillus jensenii 208-1]
 gi|256616063|gb|EEU21251.1| RNA-binding protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548150|gb|EEX24126.1| RNA-binding protein [Lactobacillus jensenii 115-3-CHN]
 gi|281303813|gb|EFA95957.1| conserved virulence factor B [Lactobacillus jensenii 208-1]
          Length = 292

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  MIGKIK-GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50
          M+G I+ G +    ++   + V GV Y +     T   + ++GD    F+ 
Sbjct: 1  MLGTIQEGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIY 51


>gi|326622889|gb|EGE29234.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 588

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 535 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587


>gi|320085436|emb|CBY95217.1| UvrABC system protein C Protein uvrC; Excinuclease ABC subunit C
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|198244405|ref|YP_002215140.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|226698792|sp|B5FRY5|UVRC_SALDC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|197938921|gb|ACH76254.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|167552827|ref|ZP_02346578.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322660|gb|EDZ10499.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 610

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|56961821|ref|YP_173543.1| recombination protein RecR [Bacillus clausii KSM-K16]
 gi|73621463|sp|Q5WLZ3|RECR_BACSK RecName: Full=Recombination protein recR
 gi|56908055|dbj|BAD62582.1| recombinational DNA repair protein RecR [Bacillus clausii KSM-K16]
          Length = 199

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRI---MTELK 129
            +   ++PGI  K ASR+   + ++K
Sbjct: 11  IEGFTRLPGIGPKTASRLAFHVLDMK 36


>gi|288928336|ref|ZP_06422183.1| recombination protein RecR [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331170|gb|EFC69754.1| recombination protein RecR [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 204

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128
            +++ +     +++PGI  K A R++  L
Sbjct: 7   SALLEKAVAEFSRLPGIGRKTALRLVLHL 35


>gi|77359784|ref|YP_339359.1| competence protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874695|emb|CAI85916.1| conserved protein of unknown function; putative competence protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 99

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 96  TELVES---IILQNSKVIAQIPGISMKIASRIM 125
            ++ ++   I   +   ++++PGI  K A  I+
Sbjct: 32  QQVKQAALNINTADVSQLSKLPGIGKKKAQAII 64


>gi|62180519|ref|YP_216936.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224583553|ref|YP_002637351.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912481|ref|ZP_04656318.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|75482712|sp|Q57N56|UVRC_SALCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764942|sp|C0Q2A7|UVRC_SALPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|62128152|gb|AAX65855.1| UvrC with UvrAB is a DNA excision repair enzyme [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224468080|gb|ACN45910.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714995|gb|EFZ06566.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 610

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|327461606|gb|EGF07937.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK1]
          Length = 445

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179
           A + + +LK +     ++  +     N   A          + ++ L  LGY  +  A  
Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241

Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207
             V+ + K  K+ A   + IIRLA  L+++  
Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQSLDS 273


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 48/176 (27%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62
           I G +    E           Y +YC  P +  + L  + D   ++    M  D   L  
Sbjct: 114 IIGTLAKKAEQK--------GYKVYCMTPDKDFAQL--VSDNIFIYKPARMGNDMEIL-- 161

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL-QN-SKVIAQIPGISMKI 120
                              G +  +         ++++ + L  +    I  IPG+  K 
Sbjct: 162 -------------------GVKEVLAKWEVERVEQVIDILGLWGDAVDNIPGIPGVGEKT 202

Query: 121 ASRIM-------------TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
           A  ++              ELKGK         Q      K    I   P     A
Sbjct: 203 AKSLIKQYGSMENIIAHSHELKGKLRENIETHAQQGLISKKLATIILDAPVELDEA 258


>gi|297183474|gb|ADI19605.1| recombinational DNA repair protein (recf pathway) [uncultured SAR11
           cluster bacterium HF0770_37D02]
          Length = 201

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            K+I+++PG+  K A RI+ +L
Sbjct: 13  IKLISKLPGLGPKSAKRIVLKL 34


>gi|288870968|ref|ZP_06115949.2| radical SAM domain protein [Clostridium hathewayi DSM 13479]
 gi|288865226|gb|EFC97524.1| radical SAM domain protein [Clostridium hathewayi DSM 13479]
          Length = 472

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGFLS----DLDRQWFMLLQS 77
           V Y  + P+   + L  + G    L     +     +R +GF +      DR  F +   
Sbjct: 280 VFYSAFVPVNQDTSLPALPGGPPLLREHRLYQADWLLRFYGFKASELLTEDRPNFNVFLD 339

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L +         I   +   + ++PG+ +K   RI+
Sbjct: 340 -----PKCDWALRHLEQFPVE-----INRADYYTLLRVPGMGVKSVKRII 379


>gi|167993514|ref|ZP_02574608.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168462516|ref|ZP_02696447.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194445436|ref|YP_002041212.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194471853|ref|ZP_03077837.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197265516|ref|ZP_03165590.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|229557861|sp|B4SW54|UVRC_SALNS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194404099|gb|ACF64321.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194458217|gb|EDX47056.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195634256|gb|EDX52608.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197243771|gb|EDY26391.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205328434|gb|EDZ15198.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247111|emb|CBG24934.1| Excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993932|gb|ACY88817.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158461|emb|CBW17971.1| UvrABC system protein C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321224588|gb|EFX49651.1| Excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130225|gb|ADX17655.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332988835|gb|AEF07818.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 610

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|67459163|ref|YP_246787.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
 gi|75536405|sp|Q4ULF1|RS1_RICFE RecName: Full=30S ribosomal protein S1
 gi|67004696|gb|AAY61622.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
          Length = 568

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D V++DV     G       P      L ++GD   +F+E    ++ 
Sbjct: 42 VKGQVIEIKNDMVIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93


>gi|16765284|ref|NP_460899.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|20141853|sp|O66041|UVRC_SALTY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|16420480|gb|AAL20858.1| UvrC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           LT2]
 gi|312912936|dbj|BAJ36910.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 610

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|168244792|ref|ZP_02669724.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451638|ref|YP_002045997.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|229557860|sp|B4T842|UVRC_SALHS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194409942|gb|ACF70161.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205336371|gb|EDZ23135.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 610

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|330501400|ref|YP_004378269.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
 gi|328915686|gb|AEB56517.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
          Length = 564

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            ++ G+G      +L+      L++ +   +S+ + Q+PGI  + AS++
Sbjct: 426 LNLNGLGPGTWSTLLASEQLDGLLDWLEF-DSQRLQQLPGIGPRRASQL 473


>gi|315655489|ref|ZP_07908388.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333]
 gi|315490144|gb|EFU79770.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333]
          Length = 693

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 47  LFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQGVGARVAMGVLSRI-TATELV 99
           L++  ++R +  R   F          R     +L +  GVG      +L    +   L 
Sbjct: 603 LYLLQYLRDESHR---FAISAHRQKRARAMTRSILDAAPGVGPAKQKALLKHFGSVKRLR 659

Query: 100 ESIILQNSKVIAQIPGISMKIASRIM 125
           E+   +    IA++PG  +K A  ++
Sbjct: 660 EASAAE----IAEVPGFGLKTAENLV 681


>gi|258574873|ref|XP_002541618.1| hypothetical protein UREG_01134 [Uncinocarpus reesii 1704]
 gi|237901884|gb|EEP76285.1| hypothetical protein UREG_01134 [Uncinocarpus reesii 1704]
          Length = 631

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 75  LQSVQ-GVGARVAMGVLS-------RITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           L   + G G   ++G  S        I  + +  +I  Q     A + G +    SR + 
Sbjct: 432 LIKFKAGTGPVPSLGACSLGEIAASGIQPSNITSAIRSQMISSTAPVSG-AKAGTSREIH 490

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
           ELK K +  ++ +  + +  N   A    +P+   +   AL NLG   +     V S+ K
Sbjct: 491 ELKRKVLEKNNGILLNQNPSNSTTAVGTRVPTTRASKAKALENLGMIPED--RKVQSISK 548

Query: 187 KE 188
             
Sbjct: 549 AN 550


>gi|207856539|ref|YP_002243190.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|226698793|sp|B5R110|UVRC_SALEP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|206708342|emb|CAR32645.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 610

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|15679455|ref|NP_276572.1| hypothetical protein MTH1458 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622572|gb|AAB85933.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 392

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 19/77 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG------VGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +GF S  + ++        G      +  + A  +   I   +L  +   +    I ++P
Sbjct: 289 YGF-SPDELRF-------SGGYLDTDLDPKYAAAMDMDIFPVDLESAPYHE----IIRVP 336

Query: 115 GISMKIASRIMTELKGK 131
           GI  K A RI+ E++ +
Sbjct: 337 GIGPKSARRII-EMRSR 352


>gi|330958463|gb|EGH58723.1| excinuclease ABC subunit C [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 607

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600


>gi|325114003|emb|CBZ49561.1| putative transcription elongation factor TFIIS [Neospora caninum
           Liverpool]
          Length = 418

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 122 SRI--MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
            RI  + ELK K I  +   Q D        A +  +     + + AL  L
Sbjct: 69  ERIERILELK-KIIDRAKPTQDDGQQAGDSGAAVTPLSGVREDVVEALTIL 118


>gi|213024849|ref|ZP_03339296.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 89

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 36  TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 88


>gi|205352358|ref|YP_002226159.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|226698794|sp|B5R896|UVRC_SALG2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|205272139|emb|CAR36992.1| UvrABC system protein C [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627409|gb|EGE33752.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 610

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609


>gi|310819968|ref|YP_003952326.1| Recombination protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393040|gb|ADO70499.1| Recombination protein [Stigmatella aurantiaca DW4/3-1]
          Length = 197

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)

Query: 93  ITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +T   L   +       +A++PGI  K A R+
Sbjct: 1   MTPDPLNRLVAQ-----LAKLPGIGEKTAQRL 27


>gi|290960256|ref|YP_003491438.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260649782|emb|CBG72898.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 753

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  +        L   II +  K + ++PG+  K   +I
Sbjct: 105 VKGIGPVFADRITQHFGLDTLQ--IIEEEPKRLIEVPGLGPKRTRKI 149


>gi|168823338|ref|ZP_02835338.1| anaerobic glycerol-3-phosphate dehydrogenase subunit A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205340448|gb|EDZ27212.1| anaerobic glycerol-3-phosphate dehydrogenase subunit A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 364

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 311 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 363


>gi|167762859|ref|ZP_02434986.1| hypothetical protein BACSTE_01222 [Bacteroides stercoris ATCC
           43183]
 gi|167699199|gb|EDS15778.1| hypothetical protein BACSTE_01222 [Bacteroides stercoris ATCC
           43183]
          Length = 205

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PGI  K A R++  L
Sbjct: 14  VNEFAKLPGIGRKTAMRLVLHL 35


>gi|163753972|ref|ZP_02161095.1| hypothetical protein KAOT1_20157 [Kordia algicida OT-1]
 gi|161326186|gb|EDP97512.1| hypothetical protein KAOT1_20157 [Kordia algicida OT-1]
          Length = 420

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSV 78
           V Y  Y PI   S L +IG    +  E   +     +R +GF  +    +    + L   
Sbjct: 253 VYYSGYVPISYDSRLPQIGTEVPMLRENRLYQTDWLMRFYGFHVNEIVNETHQHLDL--- 309

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +  ++  A+  +           +   + +++A++PG+ MK   +I+
Sbjct: 310 -DIDPKLSWALRNIHEFPVD-----VNRADKRMLARVPGLGMKSVYKIL 352


>gi|189345791|ref|YP_001942320.1| hypothetical protein Clim_0246 [Chlorobium limicola DSM 245]
 gi|189339938|gb|ACD89341.1| conserved hypothetical protein [Chlorobium limicola DSM 245]
          Length = 420

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 23/112 (20%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR---------QWFM 73
           V Y  + P+   + L  +     L     +     +R +GF S  +          + F 
Sbjct: 250 VYYSAFVPVNEDNRLPVLASPPLLREHRLYQADWLLRFYGF-SAEEILSDDAPNLDETFD 308

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                     + +  +            I   +  V+ ++PGI +  A RI+
Sbjct: 309 ---------PKTSWALRH---PEFFPVEINRADYAVLLRVPGIGVTSARRIV 348


>gi|46204773|ref|ZP_00049515.2| COG0322: Nuclease subunit of the excinuclease complex
           [Magnetospirillum magnetotacticum MS-1]
          Length = 234

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML----LQSVQGVGAR 84
           + P RT   L    D    FV   +R +  R F   +   R+   +    L  + G+G  
Sbjct: 133 FVPGRTPFKLPPR-DPVLYFV-QRLRDEAHR-FAIGTHRARRKREMTRNPLDEIAGIGPT 189

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
               +L        V++I     + +A+ PG++   A
Sbjct: 190 RKRALLHHFGT---VKAIQRAALEDLAKAPGVNAATA 223


>gi|255036664|ref|YP_003087285.1| recombination protein RecR [Dyadobacter fermentans DSM 18053]
 gi|254949420|gb|ACT94120.1| recombination protein RecR [Dyadobacter fermentans DSM 18053]
          Length = 204

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128
           +I +    I+++PGI  K A R+   L
Sbjct: 7   LIEEAVAEISRLPGIGKKTALRLALHL 33


>gi|210620507|ref|ZP_03292083.1| hypothetical protein CLOHIR_00026 [Clostridium hiranonis DSM 13275]
 gi|210155317|gb|EEA86323.1| hypothetical protein CLOHIR_00026 [Clostridium hiranonis DSM 13275]
          Length = 739

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 15/64 (23%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS-MKIAS------------RI 124
           ++G+G ++A  ++ +     L   +I    + + +I GI   K+A             +I
Sbjct: 88  IKGIGEKMANKIIDKFGVDTLD--VIQNAPERLQEIDGIGKKKVAQIVESYEEDRELRKI 145

Query: 125 MTEL 128
           + EL
Sbjct: 146 ILEL 149


>gi|167537660|ref|XP_001750498.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771038|gb|EDQ84712.1| predicted protein [Monosiga brevicollis MX1]
          Length = 2254

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 107 SKVIAQIPGISMK--IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
           ++ ++++P  + K     R M +L  +   L     +  +          +    A    
Sbjct: 506 AETLSKVPSYTTKLTTLKREMLQLHDRVKKLKKRATKAYTVQQDRLDQHAAKQEQAKKKE 565

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
            AL        +   AVV   K+ K +AD+S ++   L  ++ 
Sbjct: 566 EALKA---QPTEEAVAVVQKFKQHKKMADESALLERVLLRLAS 605


>gi|90021698|ref|YP_527525.1| excinuclease ABC subunit C [Saccharophagus degradans 2-40]
 gi|119367831|sp|Q21J16|UVRC_SACD2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|89951298|gb|ABD81313.1| Excinuclease ABC subunit C [Saccharophagus degradans 2-40]
          Length = 612

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 18/91 (19%)

Query: 43  DFCTLFVETHMRQDQIRLFGFL--------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94
           D   L +   +R +  R   F             R    +L+ + GVG +    +L    
Sbjct: 524 DSAALHLIQQIRDEAHR---FAITGHKQRRDKKRRT--SVLEGIPGVGPKRRKELLVHFG 578

Query: 95  -ATELVESIILQNSKVIAQIPGISMKIASRI 124
              E++ +    N   +A+ P IS K+A  I
Sbjct: 579 GLQEVLRA----NVDDLAKAPSISKKMAQEI 605


>gi|332365998|gb|EGJ43754.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK1059]
          Length = 445

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179
           A + + +LK +     ++  +     N   A          + ++ L  LGY  +  A  
Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241

Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207
             V+ + K  K+ A   + IIRLA  L+++  
Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQSLDS 273


>gi|325287800|ref|YP_004263590.1| Radical SAM domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324323254|gb|ADY30719.1| Radical SAM domain protein [Cellulophaga lytica DSM 7489]
          Length = 439

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL---DRQWFMLLQSV 78
           V Y  Y PI   + L +IG    +  E  + Q    L  +GF  +    ++   + L   
Sbjct: 272 VYYSGYVPISYDTRLPQIGTPVPMLRENRLYQTDWLLRFYGFNIEEILNEQHQHLDL--- 328

Query: 79  QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +  ++  A+  +           +   +  ++A+IPG+ MK   +I+
Sbjct: 329 -DIDPKLGWALRNMHEFPVD-----VNKADKHMLARIPGLGMKSVYKIL 371


>gi|304389347|ref|ZP_07371312.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327465|gb|EFL94698.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 693

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 47  LFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQGVGARVAMGVLSRI-TATELV 99
           L++  ++R +  R   F          R     +L +  GVG      +L    +   L 
Sbjct: 603 LYLLQYLRDESHR---FAISAHRQKRARAMTRSILDAAPGVGPAKQKALLRHFGSVKRLR 659

Query: 100 ESIILQNSKVIAQIPGISMKIASRIM 125
           E+   +    IA++PG  +K A  ++
Sbjct: 660 EASAAE----IAEVPGFGLKTAENLV 681


>gi|295398769|ref|ZP_06808778.1| competence protein comEA [Aerococcus viridans ATCC 11563]
 gi|294972983|gb|EFG48801.1| competence protein comEA [Aerococcus viridans ATCC 11563]
          Length = 281

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +LQ++ G+G + A  +++      L E+I       + Q+ GI  K   ++
Sbjct: 229 MLQTLSGIGEKRAADIINYRETNGLFETIDD-----LDQVSGIGEKTMEKL 274


>gi|218289070|ref|ZP_03493307.1| recombination protein RecR [Alicyclobacillus acidocaldarius LAA1]
 gi|218240895|gb|EED08073.1| recombination protein RecR [Alicyclobacillus acidocaldarius LAA1]
          Length = 199

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRI---MTELKGKAISLSSVVQQDMSCVNKEQA 151
              +  +I         ++PG+  K A+R+   + E+    +   +    D+     E A
Sbjct: 5   PEPVARAIEH-----FMKLPGVGPKTAARLAFHVLEMSEADVRAFAKALIDLKTGLTECA 59

Query: 152 HICSMPSFAINAI 164
             C++   +  AI
Sbjct: 60  VCCNITEASPCAI 72


>gi|219849482|ref|YP_002463915.1| excinuclease ABC subunit C [Chloroflexus aggregans DSM 9485]
 gi|219543741|gb|ACL25479.1| excinuclease ABC, C subunit [Chloroflexus aggregans DSM 9485]
          Length = 653

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L  + G+G +    +L    +   +  + I +    +A +PG++ K A     ELK
Sbjct: 603 LDEIPGIGPKRKRALLKAFGSIDGIRRASIDE----LAAVPGMTRKAAE----ELK 650


>gi|148656915|ref|YP_001277120.1| von Willebrand factor, type A [Roseiflexus sp. RS-1]
 gi|148569025|gb|ABQ91170.1| von Willebrand factor, type A [Roseiflexus sp. RS-1]
          Length = 561

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 14/81 (17%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
            ++DV G        +   + L +      +F+E     D   L  F          +L 
Sbjct: 384 AVLDVSG-------SMADEARLEQAKTALRIFIEQLQDDDGFGLTIFSDSA-----TVLT 431

Query: 77  SVQGVGARVA--MGVLSRITA 95
            V  +G + A  +  ++ +T 
Sbjct: 432 PVSPIGPKRAEILNRIAGLTP 452


>gi|297171241|gb|ADI22248.1| nuclease subunit of the excinuclease complex [uncultured
           Gemmatimonadales bacterium HF0200_36I24]
          Length = 551

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 47  LFVETHMRQDQIRLFGFLSDLDRQWFM------LLQSVQGVGA-RVAMGVLSRITATELV 99
           L V   +R +  R   F    +R+          L  + G+G  +  + +L   +    V
Sbjct: 469 LHVLQRIRDEAHR---FAVTYNRKLRRNRTVSSDLSEIPGIGPEKQKLLLLRFGS----V 521

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128
            +I   N + IA+I G+ + +A RI+T L
Sbjct: 522 RAIKSANVEEIAEISGLGLVLADRIITYL 550


>gi|157964625|ref|YP_001499449.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
 gi|157844401|gb|ABV84902.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
          Length = 568

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++ 
Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93


>gi|77459288|ref|YP_348795.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf0-1]
 gi|92058695|sp|Q3KBQ0|UVRC_PSEPF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77383291|gb|ABA74804.1| excinuclease uvrABC system protein C [Pseudomonas fluorescens
           Pf0-1]
          Length = 607

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIEE----IAKAPGISKKLAESI 600


>gi|89070852|ref|ZP_01158097.1| Predicted DNA-binding protein [Oceanicola granulosus HTCC2516]
 gi|89043590|gb|EAR49799.1| Predicted DNA-binding protein [Oceanicola granulosus HTCC2516]
          Length = 413

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 27/97 (27%)

Query: 39  GKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG----------VGARVAMG 88
             +     L+         +R +GF  D           + G          +  ++A  
Sbjct: 277 PPLQREHRLY----QADWLMRFYGFGVDE----------ITGSRADGNLDLEIDPKLAWA 322

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           +  R    E    +   +  ++ ++PG   K   RI+
Sbjct: 323 LAHR---EEFPLDVQRADKAMLLRVPGFGTKTVDRIL 356


>gi|293610787|ref|ZP_06693087.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827131|gb|EFF85496.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 420

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 29  YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82
           Y PI T +  L  +G    L  E   +     +R +GF  +    ++   + L     V 
Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFQVNEIVNEKHPNLDL----DVD 312

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +++  +       +    +   + ++I ++PGI +K A +I+
Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352


>gi|239948027|ref|ZP_04699780.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes
          scapularis]
 gi|239922303|gb|EER22327.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes
          scapularis]
          Length = 568

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++ 
Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93


>gi|54401351|gb|AAV34445.1| predicted endonuclease [uncultured proteobacterium RedeBAC7D11]
          Length = 217

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 20/93 (21%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL- 104
            LF +    +D ++L       ++  +       G+  + A  +++        + I   
Sbjct: 54  ELFKKAQSAKDMLKL------GEQNVYQF-IKTCGLAPKKAKAIIAT------SKIIEEK 100

Query: 105 ------QNSKVIAQIPGISMKIASRIMTELKGK 131
                  +  ++ ++PG+  K AS +++E   K
Sbjct: 101 HNGKVPNDLAMLEELPGVGHKTASVVVSEFFNK 133


>gi|256787631|ref|ZP_05526062.1| deoxyribonuclease [Streptomyces lividans TK24]
 gi|289771523|ref|ZP_06530901.1| RecD/TraA family helicase [Streptomyces lividans TK24]
 gi|289701722|gb|EFD69151.1| RecD/TraA family helicase [Streptomyces lividans TK24]
          Length = 753

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  +        L  +II +  K + ++PG+  K   +I
Sbjct: 104 VKGIGPIFADRITQHFGLDTL--TIIEEEPKRLIEVPGLGPKRTKKI 148


>gi|29832833|ref|NP_827467.1| excinuclease ABC subunit C [Streptomyces avermitilis MA-4680]
 gi|81716929|sp|Q829W8|UVRC_STRAW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|29609954|dbj|BAC74002.1| putative excinuclease ABC subunit C [Streptomyces avermitilis
           MA-4680]
          Length = 681

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 23/102 (22%)

Query: 38  LGKIGDFCTL-------FVETHMRQDQIRLFGFL-----SDLDRQWFML--LQSVQGVGA 83
           L   GD   L       ++   +R +  R   F      +   ++ F    L  V G+G 
Sbjct: 537 LPDDGDPVVLPRTSEGLYLLQRVRDEAHR---FAITYQRTKRAKR-FRASPLDDVAGLGE 592

Query: 84  RVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
                ++    +  +L  + I Q    I ++PGI  K A  I
Sbjct: 593 TRKQALIKHFGSVKKLRSATIDQ----ICEVPGIGRKTAETI 630


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 92  RITATELV--ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
            +T  ++V  ++++  +   +  +PGI  K A++++ E       L S++    S   K 
Sbjct: 166 GVTPEQMVDAQALMGDSVDNVPGVPGIGPKGAAQLIAE----FGDLESILAAAASGTMKP 221

Query: 150 QAHICSMPSFAINA 163
                S+ ++A  A
Sbjct: 222 SKRRESLVAYAEEA 235


>gi|307266863|ref|ZP_07548384.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918110|gb|EFN48363.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 303

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 142 EKDLALLDTIPGVGRRTAEQIIAE 165


>gi|21221190|ref|NP_626969.1| deoxyribonuclease [Streptomyces coelicolor A3(2)]
 gi|6714785|emb|CAB66276.1| putative deoxyribonuclease [Streptomyces coelicolor A3(2)]
          Length = 753

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  +        L  +II +  K + ++PG+  K   +I
Sbjct: 104 VKGIGPIFADRITQHFGLDTL--TIIEEEPKRLIEVPGLGPKRTKKI 148


>gi|297566359|ref|YP_003685331.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
 gi|296850808|gb|ADH63823.1| PHP domain protein [Meiothermus silvanus DSM 9946]
          Length = 576

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 74  LLQSVQGVGARVAMGVLSRIT------ATELVESIILQNSKVIAQIPGISMKIAS 122
            L+ + G+G  +A  +   +         EL   +       + +IPG+  K A 
Sbjct: 54  TLEGIPGIGPDLAAKIQEYLQSGKIAAHEELARKVPAG-VLEVMRIPGVGPKTAQ 107


>gi|313835779|gb|EFS73493.1| recombination protein RecR [Propionibacterium acnes HL037PA2]
 gi|314928454|gb|EFS92285.1| recombination protein RecR [Propionibacterium acnes HL044PA1]
 gi|314970148|gb|EFT14246.1| recombination protein RecR [Propionibacterium acnes HL037PA3]
 gi|328906729|gb|EGG26501.1| putative recombination protein RecR [Propionibacterium sp. P08]
          Length = 201

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
              ++++PGI  K A RI
Sbjct: 10  IDALSRLPGIGPKGAQRI 27


>gi|294464565|gb|ADE77792.1| unknown [Picea sitchensis]
          Length = 292

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
           +    + +  AISALV++G+ +  A  A+          AD
Sbjct: 244 VAPTMAESEEAISALVSMGFDRSSAIRALAQARNDINAAAD 284


>gi|294460509|gb|ADE75831.1| unknown [Picea sitchensis]
          Length = 292

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193
           +    + +  AISALV++G+ +  A  A+          AD
Sbjct: 244 VAPTMAESEEAISALVSMGFDRSSAIRALAQARNDINAAAD 284


>gi|289579427|ref|YP_003478054.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           italicus Ab9]
 gi|289579501|ref|YP_003478128.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           italicus Ab9]
 gi|289529140|gb|ADD03492.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           italicus Ab9]
 gi|289529214|gb|ADD03566.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           italicus Ab9]
          Length = 406

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268


>gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
 gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
          Length = 696

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 20/130 (15%)

Query: 64  LSDLDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
               D+  + +L   S++ VG   A  +  R  + E +E+   ++        G+   IA
Sbjct: 514 HDRKDQPLWRVLVGLSIRHVGPTAARALADRFGSMEAIEAATAEDIA---SAEGVGPTIA 570

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALV-----NL-GYG 173
              + E       L+    +D+    +E                +  L      +L G+ 
Sbjct: 571 E-AVVEW------LAVDWHRDVVRKWREAGVRMADERDESTPRTLEGLTIVVTGSLSGFS 623

Query: 174 QDQATTAVVS 183
           +D+A  AV+S
Sbjct: 624 RDEAKEAVLS 633


>gi|288931017|ref|YP_003435077.1| helicase [Ferroglobus placidus DSM 10642]
 gi|288893265|gb|ADC64802.1| helicase domain protein [Ferroglobus placidus DSM 10642]
          Length = 761

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  VG  +A  +L      + +E I   + + + ++  +  K A RI
Sbjct: 687 ISNVGPVIAKNLLKEF---QTIERIATASVEELMKVKNVGRKTAERI 730


>gi|229820774|ref|YP_002882300.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
 gi|229566687|gb|ACQ80538.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
          Length = 1194

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 14/71 (19%)

Query: 110  IAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS---A 166
            +A I GI  K A RI+TE + +A               ++ A    + +  + A++   A
Sbjct: 957  LAPIRGIGEKTAERIVTE-RDRAP----------FADAQDLARRVRLTAAQLEALATAGA 1005

Query: 167  LVNLGYGQDQA 177
            L   G  + +A
Sbjct: 1006 LRCFGTSRREA 1016


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 84  RVAMGVLSRITATELVESI-ILQNSK-VIAQIPGISMKIASRIMTE 127
           + A+     +T  ++++ + +  ++   I  +PG+  K A +++ E
Sbjct: 158 KRAISDKLGLTPIQVIDMLGLAGDTADNIPGVPGVGPKTAQKLIAE 203


>gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs]
 gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs]
          Length = 661

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 36/116 (31%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------------- 74
           I+CP  +LSC  ++       +  +  +D + + GF      Q F               
Sbjct: 412 IFCP-NSLSCKPQLVSR----IVHYASRDAMDIVGFSEKTAEQLFEELNLRDLADLYEIK 466

Query: 75  ---LQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGISMKIA 121
              L  +   G + A  +L  I           V ++          IP +  K A
Sbjct: 467 YEDLIKLPRFGDKKARNLLEAIENSKNCKLDSFVYAL---------GIPNVGRKTA 513


>gi|28209847|ref|NP_780791.1| recombination protein RecR [Clostridium tetani E88]
 gi|73621479|sp|Q899U3|RECR_CLOTE RecName: Full=Recombination protein recR
 gi|28202282|gb|AAO34728.1| recombination protein recR [Clostridium tetani E88]
          Length = 198

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            +  A++PGI  K A R+  
Sbjct: 12  IEEFAKLPGIGKKTAQRLTL 31


>gi|158316686|ref|YP_001509194.1| RecD/TraA family helicase [Frankia sp. EAN1pec]
 gi|158112091|gb|ABW14288.1| helicase, RecD/TraA family [Frankia sp. EAN1pec]
          Length = 744

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           V+G+G R A  ++       L + I  +    + ++PG+  K
Sbjct: 100 VKGIGPRFAERIVEHFGVDAL-DVIETE-PARLIEVPGLGPK 139


>gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046]
 gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046]
          Length = 679

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 19/115 (16%)

Query: 72  FMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM----- 125
           F+    ++GVG   A  + +   T   L  +    +   + + P +    A  I+     
Sbjct: 517 FIYALGIRGVGETTARMLANTFQTLDALRVA----DIDALKKTPDVGDITAEWIVDFFQA 572

Query: 126 ---TELKGKAIS----LSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLG 171
               E+  + ++      + V      +N E   +    S      A   L  LG
Sbjct: 573 PHNLEVLDRLLAAGIHWDAPVAPSRQPLNGESWVVTGTLSTMGRDEATQLLQALG 627


>gi|198283701|ref|YP_002220022.1| recombination protein RecR [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667448|ref|YP_002426330.1| recombination protein RecR [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|226726300|sp|B5EJE1|RECR_ACIF5 RecName: Full=Recombination protein recR
 gi|226737869|sp|B7JC18|RECR_ACIF2 RecName: Full=Recombination protein recR
 gi|198248222|gb|ACH83815.1| recombination protein RecR [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519661|gb|ACK80247.1| recombination protein RecR [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 199

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCV 146
             ++ ++PGI  + A RI  EL    +     L++  QQ  + V
Sbjct: 11  VALLRRLPGIGPRSAQRISYELLVRKRDLMPQLAAAFQQAHAVV 54


>gi|167835380|ref|ZP_02462263.1| TPR domain protein [Burkholderia thailandensis MSMB43]
          Length = 606

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 163

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +    +    II  AL+A+
Sbjct: 164 QPMLAQELARATGDSRGQAII--ALQAL 189


>gi|289578553|ref|YP_003477180.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           italicus Ab9]
 gi|289528266|gb|ADD02618.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           italicus Ab9]
          Length = 406

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268


>gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
 gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
          Length = 713

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 33/185 (17%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD------------ 66
           +D+ G  Y     +     +  +GD   L  E+        L GF               
Sbjct: 469 LDIDGFGYETATALLEAGRVRDVGDVFHLTAESFAE-----LRGFAKKKIDQILRGVEAA 523

Query: 67  LDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             +  + LL   S++ VG   A  +   + +   V++I   +++ +A + G+   IA+ +
Sbjct: 524 RQQPLWRLLVGLSIRHVGPSAARALAREMRS---VDAIAAASTETLAAVDGVGPTIAASV 580

Query: 125 MTELKGKAIS------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           +               L  +        +          +     I+  +  G+ +D AT
Sbjct: 581 V----DWFADPRHQDILERIRSGGARFADAGADDGPGPLTGVTVVITGTLA-GWSRDSAT 635

Query: 179 TAVVS 183
            AV +
Sbjct: 636 EAVQA 640


>gi|212703816|ref|ZP_03311944.1| hypothetical protein DESPIG_01864 [Desulfovibrio piger ATCC 29098]
 gi|212672784|gb|EEB33267.1| hypothetical protein DESPIG_01864 [Desulfovibrio piger ATCC 29098]
          Length = 765

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++GVG  +A  +++      +   ++ +  + + +I G+  K   +I
Sbjct: 118 IKGVGEEMAGRIVAAFGTDTIR--VLDEEPERLLKIKGVGKKSFEKI 162


>gi|326389952|ref|ZP_08211515.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994012|gb|EGD52441.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 406

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268


>gi|325123642|gb|ADY83165.1| hypothetical protein BDGL_002579 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 420

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 29  YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82
           Y PI T +  L  +G    L  E   +     +R +GF  +    ++   + L     V 
Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPNLDL----DVD 312

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +++  +       +    +   + ++I ++PGI +K A +I+
Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352


>gi|323705218|ref|ZP_08116794.1| recombination protein RecR [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535644|gb|EGB25419.1| recombination protein RecR [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 199

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 14/22 (63%), Gaps = 3/22 (13%)

Query: 110 IAQIPGISMKIASRI---MTEL 128
           ++++PGI  K A R+   + ++
Sbjct: 15  LSRLPGIGRKTAQRLAFYILDM 36


>gi|300312972|ref|YP_003777064.1| recombinational DNA repair protein [Herbaspirillum seropedicae
           SmR1]
 gi|300075757|gb|ADJ65156.1| rocombinational DNA repair protein [Herbaspirillum seropedicae
           SmR1]
          Length = 198

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 109 VIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCV 146
            + ++PGI  K A R+   L    +  A  LS  + + +  +
Sbjct: 13  SLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTI 54


>gi|239503272|ref|ZP_04662582.1| DNA-binding protein [Acinetobacter baumannii AB900]
          Length = 420

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 29  YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82
           Y PI T +  L  +G    L  E   +     +R +GF  +    ++   + L     V 
Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPNLDL----DVD 312

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +++  +       +    +   + ++I ++PGI +K A +I+
Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352


>gi|284991267|ref|YP_003409821.1| helicase, RecD/TraA family [Geodermatophilus obscurus DSM 43160]
 gi|284064512|gb|ADB75450.1| helicase, RecD/TraA family [Geodermatophilus obscurus DSM 43160]
          Length = 754

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           V+G+G R+A  ++       L   +I +    +A++P +  K
Sbjct: 96  VKGIGPRLAERIVDHFGTDALR--VIEEEPGRLAEVPNLGPK 135


>gi|184159635|ref|YP_001847974.1| DNA-binding protein [Acinetobacter baumannii ACICU]
 gi|332876120|ref|ZP_08443904.1| putative DNA modification/repair radical SAM protein [Acinetobacter
           baumannii 6014059]
 gi|183211229|gb|ACC58627.1| predicted DNA-binding protein with the Helix-hairpin-helix motif
           [Acinetobacter baumannii ACICU]
 gi|322509545|gb|ADX04999.1| DNA-binding protein [Acinetobacter baumannii 1656-2]
 gi|323519565|gb|ADX93946.1| DNA-binding protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332735738|gb|EGJ66781.1| putative DNA modification/repair radical SAM protein [Acinetobacter
           baumannii 6014059]
          Length = 420

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 29  YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82
           Y PI T +  L  +G    L  E   +     +R +GF  +    ++   + L     V 
Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPNLDL----DVD 312

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +++  +       +    +   + ++I ++PGI +K A +I+
Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352


>gi|295101169|emb|CBK98714.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif
           [Faecalibacterium prausnitzii L2-6]
          Length = 452

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 38/130 (29%)

Query: 72  FMLLQSVQGVGARVAMGV-----LSRITATELVESIILQNSKVIAQI------------- 113
           F +L  V G+G + A  +     LS +   EL          V+ +              
Sbjct: 333 FEMLLRVPGIGPKSARRIRDARRLSALGLDELKRI-----GVVLKRAQYFITCRGFSGAH 387

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG       RI            +++  ++     EQ  + + P     A+  LV  G  
Sbjct: 388 PGRGSAGRERI----------TRALIDPNVFSAGAEQLSMFAPP-----AVDRLVEQGVP 432

Query: 174 QDQATTAVVS 183
              A   V  
Sbjct: 433 PRAAQRMVRE 442


>gi|195941240|ref|ZP_03086622.1| UvrC excinuclease ABC subunit C [Escherichia coli O157:H7 str.
           EC4024]
          Length = 318

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 266 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 317


>gi|187734950|ref|YP_001877062.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835]
 gi|187425002|gb|ACD04281.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835]
          Length = 375

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 14/86 (16%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM--- 125
           R+  + L  + G+G    M +L    + EL   I+   S ++ +IPG+  ++A RI    
Sbjct: 4   REAAIALNLIPGLGPVRIMRLLQVFASPEL---ILESPSSLLMEIPGVGAQLACRISSWR 60

Query: 126 --------TELKGKAISLSSVVQQDM 143
                    EL   A +  + V  D 
Sbjct: 61  STVNPYRELELADNAGAAVTTVFDDS 86


>gi|300913858|ref|ZP_07131175.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
 gi|300890543|gb|EFK85688.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
          Length = 301

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 140 EKDLALLDTIPGVGRRTAEQIIAE 163


>gi|149185958|ref|ZP_01864273.1| excinuclease ABC subunit C [Erythrobacter sp. SD-21]
 gi|148830519|gb|EDL48955.1| excinuclease ABC subunit C [Erythrobacter sp. SD-21]
          Length = 655

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  + G+G      +L        V +  L +   + + PGIS  +A +I
Sbjct: 601 LDEIPGIGPARKRALLLHFGTAGKVRAAALDD---LKRAPGISAGVAQQI 647


>gi|323253652|gb|EGA37480.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
          Length = 83

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 30  TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 82


>gi|307267693|ref|ZP_07549146.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306917287|gb|EFN47608.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 406

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268


>gi|217964370|ref|YP_002350048.1| ComE operon protein 1 [Listeria monocytogenes HCC23]
 gi|217333640|gb|ACK39434.1| ComE operon protein 1 [Listeria monocytogenes HCC23]
 gi|307571065|emb|CAR84244.1| DNA-binding protein, ComEA family [Listeria monocytogenes L99]
          Length = 200

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 149 LQQVPGIGESKATAIIEHREKEGLFQTIED-----LKNVSGIGEKTVEKL 193


>gi|152992646|ref|YP_001358367.1| hypothetical protein SUN_1053 [Sulfurovum sp. NBC37-1]
 gi|151424507|dbj|BAF72010.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 476

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104
           +++   LL SV+G+G + A  ++ +   TELV ++  
Sbjct: 409 EKKVEKLLTSVEGIGKKKAEKIMDKFDTTELVHALET 445


>gi|51473703|ref|YP_067460.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
 gi|81390060|sp|Q68WL4|RS1_RICTY RecName: Full=30S ribosomal protein S1
 gi|51460015|gb|AAU03978.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
          Length = 568

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++ 
Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLSLPEVGDVVEVFIEKIEGRNG 93


>gi|42525063|ref|NP_970443.1| DNA repair and genetic recombination protein [Bdellovibrio
           bacteriovorus HD100]
 gi|73621467|sp|Q6MH30|RECR_BDEBA RecName: Full=Recombination protein recR
 gi|39577274|emb|CAE81097.1| DNA repair and genetic recombination protein [Bdellovibrio
           bacteriovorus HD100]
          Length = 204

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 110 IAQIPGISMKIASRI 124
           ++++PGI  K A R+
Sbjct: 14  LSRLPGIGPKTAQRL 28


>gi|15604379|ref|NP_220895.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Madrid E]
 gi|6226091|sp|Q9ZD28|RS1_RICPR RecName: Full=30S ribosomal protein S1
 gi|3861071|emb|CAA14971.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Rickettsia prowazekii]
 gi|292572134|gb|ADE30049.1| 30S ribosomal protein S1 [Rickettsia prowazekii Rp22]
          Length = 568

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++ 
Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLSLPEVGDVVEVFIEKIEGRNG 93


>gi|332829165|gb|EGK01829.1| recombination protein recR [Dysgonomonas gadei ATCC BAA-286]
          Length = 207

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 102 IILQN-SKVIAQIPGISMKIASRIMTEL 128
           I+L+N     A++PGI  K A R++  L
Sbjct: 8   ILLENAVNEFARLPGIGRKTALRLILHL 35


>gi|260912246|ref|ZP_05918798.1| recombination protein R [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633680|gb|EEX51818.1| recombination protein R [Prevotella sp. oral taxon 472 str. F0295]
          Length = 204

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTE-LKGKAISLSSVVQQ 141
            +++ +     +++PGI  K A R++   LK +   + S    
Sbjct: 7   SALLEKAVSEFSRLPGIGRKTALRLVLHLLKTRVEDVESFSSS 49


>gi|213854703|ref|ZP_03382943.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 331

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 278 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 330


>gi|171913023|ref|ZP_02928493.1| endonuclease III [Verrucomicrobium spinosum DSM 4136]
          Length = 217

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 13/50 (26%)

Query: 80  GVGARVAMGVLSRITATELVESIILQ------NS-KVIAQIPGISMKIAS 122
           G+G + A  +      +EL + I+ +      ++   + ++PG+  K A 
Sbjct: 81  GLGPQKAKAI------SELSKIIVREHSGKVPDTLDALEKLPGVGHKTAQ 124


>gi|167036557|ref|YP_001664135.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167036558|ref|YP_001664136.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167036559|ref|YP_001664137.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167036560|ref|YP_001664138.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167036561|ref|YP_001664139.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167037327|ref|YP_001664905.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038866|ref|YP_001661851.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X514]
 gi|167040932|ref|YP_001663917.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X514]
 gi|167040933|ref|YP_001663918.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X514]
 gi|300913548|ref|ZP_07130865.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
 gi|300913856|ref|ZP_07131173.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
 gi|300913857|ref|ZP_07131174.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
 gi|307723437|ref|YP_003903188.1| transposase IS110 family protein [Thermoanaerobacter sp. X513]
 gi|307725457|ref|YP_003905208.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X513]
 gi|307725458|ref|YP_003905209.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X513]
 gi|320114988|ref|YP_004185147.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|320114989|ref|YP_004185148.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|320115743|ref|YP_004185902.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|326390289|ref|ZP_08211849.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|166853106|gb|ABY91515.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X514]
 gi|166855172|gb|ABY93581.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X514]
 gi|166855173|gb|ABY93582.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X514]
 gi|166855391|gb|ABY93799.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166855392|gb|ABY93800.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166855393|gb|ABY93801.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166855394|gb|ABY93802.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166855395|gb|ABY93803.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166856161|gb|ABY94569.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300890233|gb|EFK85378.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
 gi|300890541|gb|EFK85686.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
 gi|300890542|gb|EFK85687.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X561]
 gi|307580498|gb|ADN53897.1| transposase IS110 family protein [Thermoanaerobacter sp. X513]
 gi|307582518|gb|ADN55917.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X513]
 gi|307582519|gb|ADN55918.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           sp. X513]
 gi|319928079|gb|ADV78764.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|319928080|gb|ADV78765.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|319928834|gb|ADV79519.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|325993734|gb|EGD52166.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 406

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268


>gi|330942152|gb|EGH44804.1| excinuclease ABC subunit C [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 379

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 325 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 372


>gi|291514310|emb|CBK63520.1| helicase, putative, RecD/TraA family [Alistipes shahii WAL 8301]
          Length = 723

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           V+G+G R A  ++ R    E ++ I  +  + + ++P I  K
Sbjct: 95  VKGIGPRFARAIVQRFGT-ETIDIIETE-IERLYEVPNIGRK 134


>gi|20806579|ref|NP_621750.1| recombinational DNA repair protein [Thermoanaerobacter
           tengcongensis MB4]
 gi|24212232|sp|Q8RDI4|RECR_THETN RecName: Full=Recombination protein recR
 gi|20515021|gb|AAM23354.1| Recombinational DNA repair protein [Thermoanaerobacter
           tengcongensis MB4]
          Length = 199

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + ++++PGI  K A R+
Sbjct: 12  IEELSKLPGIGPKTAQRL 29


>gi|327334776|gb|EGE76487.1| recombination protein RecR [Propionibacterium acnes HL097PA1]
          Length = 201

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
              ++++PGI  K A RI
Sbjct: 10  IDALSRLPGIGPKGAQRI 27


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 92  RITATELV--ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
            +T  ++V  ++++  +   +  +PGI  K A++++ E       L S++    S   K 
Sbjct: 143 GVTPEQMVDAQALMGDSVDNVPGVPGIGPKGAAQLIAE----FGDLESILAAAASGTMKP 198

Query: 150 QAHICSMPSFAINA 163
                S+ ++A  A
Sbjct: 199 SKRRESLVAYAEEA 212


>gi|257440048|ref|ZP_05615803.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257197400|gb|EEU95684.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 465

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 39/142 (27%)

Query: 61  FG-FLSDLDRQWFMLLQSVQGVGARVAMGV-----LSRITATELVESIILQNSKVIAQI- 113
           +G F  D++R  F +L  V G+G + A  +      + +   EL          V+ +  
Sbjct: 334 YGLFPVDVNRAPFEMLLRVPGIGPKSARRIWHARKQAALGLDELKRM-----GVVLKRAQ 388

Query: 114 ------------PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161
                       PG       RI            +++  ++     EQ  + S P    
Sbjct: 389 YFITCRGFAGAHPGRGSAGRERI----------TRALIDPNVFSGGVEQLSMFSPP---- 434

Query: 162 NAISALVNLGYGQDQATTAVVS 183
            A+  LV  G     A   V  
Sbjct: 435 -AVDRLVEQGVPPRTAQKMVRE 455


>gi|237800462|ref|ZP_04588923.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023321|gb|EGI03378.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 218

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 164 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 211


>gi|160939770|ref|ZP_02087117.1| hypothetical protein CLOBOL_04661 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437204|gb|EDP14969.1| hypothetical protein CLOBOL_04661 [Clostridium bolteae ATCC
           BAA-613]
          Length = 541

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77
           V Y  Y P+   SCL  +     L  E  + Q    L  +GF ++     ++  F +   
Sbjct: 349 VFYSAYVPVNDDSCLPSVTARPPLLREHRLYQADWLLRFYGFKAEELLSEEQPNFNVFLD 408

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           I   +   + ++PG+ +K   RI+
Sbjct: 409 -----PKCDWALRHLELFPVE-----INRASYGELLRVPGMGVKSVQRIV 448


>gi|328953957|ref|YP_004371291.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109]
 gi|328454281|gb|AEB10110.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109]
          Length = 442

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 13/106 (12%)

Query: 26  YIIYCPI-RTLSCLGKIGDFCTL---FVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
             I  P  +    +GK G    L        +       +   S   ++ ++ L  + GV
Sbjct: 305 MEIIVPDDQLFLAIGKRGQNVRLAAKLTGWKIDVKSESKY---SKSMKEGYLSLLKIPGV 361

Query: 82  GARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G   A  +      +A E+ E+    N   + Q+PGI+ K A++I+
Sbjct: 362 GEMTASALYEAGFTSAKEVAEA----NLAELMQVPGINEKKATQIL 403


>gi|254496162|ref|ZP_05109059.1| recombinational DNA repair protein RecR [Legionella drancourtii
           LLAP12]
 gi|254354618|gb|EET13256.1| recombinational DNA repair protein RecR [Legionella drancourtii
           LLAP12]
          Length = 197

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCVN 147
            + +  +PG+  K A R++  L    + + + L+S ++Q MS +N
Sbjct: 8   VEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLASCLEQAMSQIN 52


>gi|171778643|ref|ZP_02919739.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282600|gb|EDT48024.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 226

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 29/122 (23%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ------IRLFG 62
           +     D  ++ V  +   +  P  T S              + ++ D            
Sbjct: 121 LAEKLADEAVVYVAKIGEEV-TPASTPSQ-------AKATTASGVQGDDSAQINLNT--- 169

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
             +  +      LQ++ G+GA+ A  ++    A     S+       +  I GI  K   
Sbjct: 170 -ATTEE------LQTISGIGAKRAQDIIDYRDANGGFSSVDD-----LKNISGIGEKTLE 217

Query: 123 RI 124
           ++
Sbjct: 218 KL 219


>gi|114776451|ref|ZP_01451496.1| excinuclease ABC subunit C [Mariprofundus ferrooxydans PV-1]
 gi|114553281|gb|EAU55679.1| excinuclease ABC subunit C [Mariprofundus ferrooxydans PV-1]
          Length = 611

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           L +V+G+G    + +L        +E +     K +AQ PGIS K+A +I   L
Sbjct: 559 LDTVEGIGPAKRISLLKHFGG---IEGVKKAGRKQLAQAPGISDKLAEKIFLSL 609


>gi|167036562|ref|YP_001664140.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320114990|ref|YP_004185149.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855396|gb|ABY93804.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928081|gb|ADV78766.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 406

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268


>gi|289577926|ref|YP_003476553.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           italicus Ab9]
 gi|289527639|gb|ADD01991.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           italicus Ab9]
          Length = 406

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268


>gi|317132690|ref|YP_004092004.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315470669|gb|ADU27273.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 447

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 36/190 (18%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLDRQWFMLLQSV--- 78
           V Y  Y P+   + L        L  E  + Q    L  +GF S  +     LL      
Sbjct: 252 VFYSAYMPMNEDTLLPARDVKPPLLREHRLYQADWLLRFYGF-SADE-----LLDDAHPD 305

Query: 79  --QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM-------TE 127
               +  +   A+  L +         +   +   + ++PGI +  A RI+        +
Sbjct: 306 FNPYLDPKCNWALHHLEQFPVE-----VNRADYATLLRVPGIGVTSAKRILRVRRAGSLD 360

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
                  L  V+++    +         +      AI AL++          A+  + + 
Sbjct: 361 F-DALKKLGVVLKRAQYFITCRDRQRQGLMQTKDAAIRALLS--------EQALARLQED 411

Query: 188 EKNIADDSQI 197
             ++    Q+
Sbjct: 412 APSVLRPRQL 421


>gi|56478596|ref|YP_160185.1| excinuclease ABC subunit C [Aromatoleum aromaticum EbN1]
 gi|81356713|sp|Q5P080|UVRC_AZOSE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56314639|emb|CAI09284.1| Excinuclease ABC subunit C [Aromatoleum aromaticum EbN1]
          Length = 602

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+ + G+G      +L+     + V +  +++   + ++ G+S K A  I
Sbjct: 551 LEDIPGIGPMRRRNLLASFGGLDGVRAATVED---LCRVGGVSRKTAEAI 597


>gi|326391563|ref|ZP_08213094.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992393|gb|EGD50854.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 325

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 189 EKDLALLDTIPGVGRRTAEQIIAE 212


>gi|170722748|ref|YP_001750436.1| recombination protein RecR [Pseudomonas putida W619]
 gi|229470339|sp|B1JBZ1|RECR_PSEPW RecName: Full=Recombination protein recR
 gi|169760751|gb|ACA74067.1| recombination protein RecR [Pseudomonas putida W619]
          Length = 200

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152
              +  +PG+  K A R+  +L  +  S    + Q +S   +   H
Sbjct: 11  IDALRTLPGVGQKTAQRMALQLLERDRSGGVRLAQALSLAMEGVGH 56


>gi|49482705|ref|YP_039929.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903063|ref|ZP_06310956.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           C160]
 gi|282907452|ref|ZP_06315300.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282907800|ref|ZP_06315640.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283959908|ref|ZP_06377349.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295427011|ref|ZP_06819650.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297588777|ref|ZP_06947418.1| recombination protein R [Staphylococcus aureus subsp. aureus MN8]
 gi|56749587|sp|Q6GJJ3|RECR_STAAR RecName: Full=Recombination protein recR
 gi|49240834|emb|CAG39501.1| putative recombination protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282328364|gb|EFB58637.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330351|gb|EFB59872.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282597522|gb|EFC02481.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           C160]
 gi|283789500|gb|EFC28327.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295129463|gb|EFG59090.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297577288|gb|EFH96001.1| recombination protein R [Staphylococcus aureus subsp. aureus MN8]
 gi|315193218|gb|EFU23617.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 198

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK 129
                ++PGI  K A R+     ++K
Sbjct: 11  INSFMKLPGIGPKTAQRLAFHTLDMK 36


>gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J]
 gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J]
          Length = 652

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 23/125 (18%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGIS----- 117
            +  D+  F L   ++ VGA+ +  +L    +   L+++    + + IAQI G+      
Sbjct: 491 SNSADKLLFGL--GIRHVGAKASRLLLETFGSVENLMKA----DDQSIAQIDGLGHVIAN 544

Query: 118 -------MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI----NAISA 166
                   + A +++ ELK K ++L  + ++  +        +             A   
Sbjct: 545 SIKNYFAKEEAKQLIFELKDKGVNLDYLGKKVDTSAQLFGLTVVLTGKLEEMTRQEAKEK 604

Query: 167 LVNLG 171
           L N+G
Sbjct: 605 LENMG 609


>gi|327329178|gb|EGE70938.1| recombination protein RecR [Propionibacterium acnes HL103PA1]
          Length = 201

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
              ++++PGI  K A RI
Sbjct: 10  IDALSRLPGIGPKGAQRI 27


>gi|314965632|gb|EFT09731.1| recombination protein RecR [Propionibacterium acnes HL082PA2]
          Length = 201

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
              ++++PGI  K A RI
Sbjct: 10  IDALSRLPGIGPKGAQRI 27


>gi|313764792|gb|EFS36156.1| recombination protein RecR [Propionibacterium acnes HL013PA1]
 gi|313815377|gb|EFS53091.1| recombination protein RecR [Propionibacterium acnes HL059PA1]
 gi|314916441|gb|EFS80272.1| recombination protein RecR [Propionibacterium acnes HL005PA4]
 gi|314917282|gb|EFS81113.1| recombination protein RecR [Propionibacterium acnes HL050PA1]
 gi|314921657|gb|EFS85488.1| recombination protein RecR [Propionibacterium acnes HL050PA3]
 gi|314930697|gb|EFS94528.1| recombination protein RecR [Propionibacterium acnes HL067PA1]
 gi|314955186|gb|EFS99591.1| recombination protein RecR [Propionibacterium acnes HL027PA1]
 gi|314959379|gb|EFT03481.1| recombination protein RecR [Propionibacterium acnes HL002PA1]
 gi|315099546|gb|EFT71522.1| recombination protein RecR [Propionibacterium acnes HL059PA2]
 gi|315102224|gb|EFT74200.1| recombination protein RecR [Propionibacterium acnes HL046PA1]
 gi|327454473|gb|EGF01128.1| recombination protein RecR [Propionibacterium acnes HL087PA3]
 gi|327456542|gb|EGF03197.1| recombination protein RecR [Propionibacterium acnes HL083PA2]
 gi|328756236|gb|EGF69852.1| recombination protein RecR [Propionibacterium acnes HL087PA1]
 gi|328759441|gb|EGF73057.1| recombination protein RecR [Propionibacterium acnes HL025PA2]
          Length = 201

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
              ++++PGI  K A RI
Sbjct: 10  IDALSRLPGIGPKGAQRI 27


>gi|50841698|ref|YP_054925.1| putative recombination protein RecR [Propionibacterium acnes
           KPA171202]
 gi|282853261|ref|ZP_06262598.1| recombination protein RecR [Propionibacterium acnes J139]
 gi|289424537|ref|ZP_06426320.1| recombination protein RecR [Propionibacterium acnes SK187]
 gi|289428817|ref|ZP_06430497.1| recombination protein RecR [Propionibacterium acnes J165]
 gi|295129773|ref|YP_003580436.1| recombination protein RecR [Propionibacterium acnes SK137]
 gi|73621506|sp|Q6AB99|RECR_PROAC RecName: Full=Recombination protein recR
 gi|50839300|gb|AAT81967.1| putative recombination protein RecR [Propionibacterium acnes
           KPA171202]
 gi|282582714|gb|EFB88094.1| recombination protein RecR [Propionibacterium acnes J139]
 gi|289155234|gb|EFD03916.1| recombination protein RecR [Propionibacterium acnes SK187]
 gi|289157818|gb|EFD06041.1| recombination protein RecR [Propionibacterium acnes J165]
 gi|291375135|gb|ADD98989.1| recombination protein RecR [Propionibacterium acnes SK137]
 gi|313772742|gb|EFS38708.1| recombination protein RecR [Propionibacterium acnes HL074PA1]
 gi|313793233|gb|EFS41300.1| recombination protein RecR [Propionibacterium acnes HL110PA1]
 gi|313802803|gb|EFS44019.1| recombination protein RecR [Propionibacterium acnes HL110PA2]
 gi|313806719|gb|EFS45224.1| recombination protein RecR [Propionibacterium acnes HL087PA2]
 gi|313811223|gb|EFS48937.1| recombination protein RecR [Propionibacterium acnes HL083PA1]
 gi|313813995|gb|EFS51709.1| recombination protein RecR [Propionibacterium acnes HL025PA1]
 gi|313817486|gb|EFS55200.1| recombination protein RecR [Propionibacterium acnes HL046PA2]
 gi|313821298|gb|EFS59012.1| recombination protein RecR [Propionibacterium acnes HL036PA1]
 gi|313824760|gb|EFS62474.1| recombination protein RecR [Propionibacterium acnes HL036PA2]
 gi|313826422|gb|EFS64136.1| recombination protein RecR [Propionibacterium acnes HL063PA1]
 gi|313828819|gb|EFS66533.1| recombination protein RecR [Propionibacterium acnes HL063PA2]
 gi|313832226|gb|EFS69940.1| recombination protein RecR [Propionibacterium acnes HL007PA1]
 gi|313834282|gb|EFS71996.1| recombination protein RecR [Propionibacterium acnes HL056PA1]
 gi|313840339|gb|EFS78053.1| recombination protein RecR [Propionibacterium acnes HL086PA1]
 gi|314922446|gb|EFS86277.1| recombination protein RecR [Propionibacterium acnes HL001PA1]
 gi|314926532|gb|EFS90363.1| recombination protein RecR [Propionibacterium acnes HL036PA3]
 gi|314961564|gb|EFT05665.1| recombination protein RecR [Propionibacterium acnes HL002PA2]
 gi|314964644|gb|EFT08744.1| recombination protein RecR [Propionibacterium acnes HL082PA1]
 gi|314969352|gb|EFT13450.1| recombination protein RecR [Propionibacterium acnes HL037PA1]
 gi|314974377|gb|EFT18472.1| recombination protein RecR [Propionibacterium acnes HL053PA1]
 gi|314976989|gb|EFT21084.1| recombination protein RecR [Propionibacterium acnes HL045PA1]
 gi|314980019|gb|EFT24113.1| recombination protein RecR [Propionibacterium acnes HL072PA2]
 gi|314982795|gb|EFT26887.1| recombination protein RecR [Propionibacterium acnes HL110PA3]
 gi|314985373|gb|EFT29465.1| recombination protein RecR [Propionibacterium acnes HL005PA1]
 gi|314987436|gb|EFT31527.1| recombination protein RecR [Propionibacterium acnes HL005PA2]
 gi|314989200|gb|EFT33291.1| recombination protein RecR [Propionibacterium acnes HL005PA3]
 gi|315078846|gb|EFT50868.1| recombination protein RecR [Propionibacterium acnes HL053PA2]
 gi|315081811|gb|EFT53787.1| recombination protein RecR [Propionibacterium acnes HL078PA1]
 gi|315082835|gb|EFT54811.1| recombination protein RecR [Propionibacterium acnes HL027PA2]
 gi|315086410|gb|EFT58386.1| recombination protein RecR [Propionibacterium acnes HL002PA3]
 gi|315087897|gb|EFT59873.1| recombination protein RecR [Propionibacterium acnes HL072PA1]
 gi|315091448|gb|EFT63424.1| recombination protein RecR [Propionibacterium acnes HL110PA4]
 gi|315094386|gb|EFT66362.1| recombination protein RecR [Propionibacterium acnes HL060PA1]
 gi|315097212|gb|EFT69188.1| recombination protein RecR [Propionibacterium acnes HL038PA1]
 gi|315105108|gb|EFT77084.1| recombination protein RecR [Propionibacterium acnes HL050PA2]
 gi|315107697|gb|EFT79673.1| recombination protein RecR [Propionibacterium acnes HL030PA1]
 gi|315109894|gb|EFT81870.1| recombination protein RecR [Propionibacterium acnes HL030PA2]
 gi|327331272|gb|EGE73011.1| recombination protein RecR [Propionibacterium acnes HL096PA2]
 gi|327333905|gb|EGE75622.1| recombination protein RecR [Propionibacterium acnes HL096PA3]
 gi|327444626|gb|EGE91280.1| recombination protein RecR [Propionibacterium acnes HL013PA2]
 gi|327447350|gb|EGE94004.1| recombination protein RecR [Propionibacterium acnes HL043PA1]
 gi|327450462|gb|EGE97116.1| recombination protein RecR [Propionibacterium acnes HL043PA2]
 gi|327457182|gb|EGF03837.1| recombination protein RecR [Propionibacterium acnes HL092PA1]
 gi|328758130|gb|EGF71746.1| recombination protein RecR [Propionibacterium acnes HL020PA1]
 gi|328761181|gb|EGF74723.1| recombination protein RecR [Propionibacterium acnes HL099PA1]
 gi|332674612|gb|AEE71428.1| recombination protein RecR [Propionibacterium acnes 266]
          Length = 201

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
              ++++PGI  K A RI
Sbjct: 10  IDALSRLPGIGPKGAQRI 27


>gi|289626299|ref|ZP_06459253.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
          Length = 261

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 207 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 254


>gi|189459398|ref|ZP_03008183.1| hypothetical protein BACCOP_00019 [Bacteroides coprocola DSM 17136]
 gi|189433855|gb|EDV02840.1| hypothetical protein BACCOP_00019 [Bacteroides coprocola DSM 17136]
          Length = 222

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            A++PGI  K A R++  L
Sbjct: 34  FAKLPGIGRKTAMRLVLHL 52


>gi|110642025|ref|YP_669755.1| UvrC excinuclease ABC subunit C [Escherichia coli 536]
 gi|110343617|gb|ABG69854.1| UvrC excinuclease ABC subunit C [Escherichia coli 536]
          Length = 441

 Score = 36.5 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 389 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 440


>gi|329964827|ref|ZP_08301835.1| recombination protein RecR [Bacteroides fluxus YIT 12057]
 gi|328524468|gb|EGF51536.1| recombination protein RecR [Bacteroides fluxus YIT 12057]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PGI  K A R++  L
Sbjct: 14  VSEFAKLPGIGRKTAMRLVLHL 35


>gi|319744775|gb|EFV97115.1| competence protein CelA [Streptococcus agalactiae ATCC 13813]
          Length = 217

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ++ GVGA+ A  +L    +    ++I       +  + GI  K   ++
Sbjct: 166 LQTISGVGAKRAQDILDYRDSQGGFKTIDD-----LKNVSGIGEKTLEKL 210


>gi|254478345|ref|ZP_05091724.1| recombination protein RecR [Carboxydibrachium pacificum DSM 12653]
 gi|214035703|gb|EEB76398.1| recombination protein RecR [Carboxydibrachium pacificum DSM 12653]
          Length = 199

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + ++++PGI  K A R+
Sbjct: 12  IEELSKLPGIGPKTAQRL 29


>gi|34581621|ref|ZP_00143101.1| 30S ribosomal protein S1 [Rickettsia sibirica 246]
 gi|28263006|gb|EAA26510.1| 30S ribosomal protein S1 [Rickettsia sibirica 246]
          Length = 568

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++ 
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93


>gi|22536945|ref|NP_687796.1| competence protein CelA [Streptococcus agalactiae 2603V/R]
 gi|25010856|ref|NP_735251.1| hypothetical protein gbs0801 [Streptococcus agalactiae NEM316]
 gi|77411344|ref|ZP_00787692.1| competence protein CelA [Streptococcus agalactiae CJB111]
 gi|77413586|ref|ZP_00789773.1| competence protein CelA [Streptococcus agalactiae 515]
 gi|22533798|gb|AAM99668.1|AE014227_12 competence protein CelA [Streptococcus agalactiae 2603V/R]
 gi|23095235|emb|CAD46445.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160352|gb|EAO71476.1| competence protein CelA [Streptococcus agalactiae 515]
 gi|77162604|gb|EAO73567.1| competence protein CelA [Streptococcus agalactiae CJB111]
          Length = 217

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ++ GVGA+ A  +L    +    ++I       +  + GI  K   ++
Sbjct: 166 LQTISGVGAKRAQDILDYRDSQGGFKTIDD-----LKNVSGIGEKTLEKL 210


>gi|330960851|gb|EGH61111.1| radical SAM family protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 406

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L  +    +  +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNNA----DPALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|330950408|gb|EGH50668.1| excinuclease ABC subunit C [Pseudomonas syringae Cit 7]
          Length = 336

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 282 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 329


>gi|330995009|ref|ZP_08318929.1| hypothetical protein SXCC_04894 [Gluconacetobacter sp. SXCC-1]
 gi|329757922|gb|EGG74446.1| hypothetical protein SXCC_04894 [Gluconacetobacter sp. SXCC-1]
          Length = 677

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           ++G+G   A  ++      E V  +I Q  + + ++ GI  K A RI+
Sbjct: 49  IRGIGPVYAKKLVKAFG--EAVFDLIEQEPERLREVTGIGPKRAERIV 94


>gi|312880191|ref|ZP_07739991.1| flagellin domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783482|gb|EFQ23880.1| flagellin domain protein [Aminomonas paucivorans DSM 12260]
          Length = 1932

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 27   IIYCPIRTLSCLGKIGDFC--TLFVETHMR-------QDQIRLFGFL-----SDLDRQWF 72
             I+ P+ +LS +GK+G+     +++   M+       +D I  +G+          R+ F
Sbjct: 1613 EIHVPLGSLSEMGKLGEQISEQIWLHLLMQHDGVLRGEDDILPYGYNPDLMEEKDKREIF 1672

Query: 73   MLLQSVQG 80
              + +V G
Sbjct: 1673 QFVNNVPG 1680


>gi|326792661|ref|YP_004310482.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427]
 gi|326543425|gb|ADZ85284.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427]
          Length = 749

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++G+GA+ A  ++           II +   V+AQ+ GIS K A  I
Sbjct: 87  IKGIGAKTAKKIVKHFGLDTFR--IIEEEPLVLAQVSGISEKKAQEI 131


>gi|238650580|ref|YP_002916432.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic]
 gi|238624678|gb|ACR47384.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic]
          Length = 568

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++ 
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93


>gi|238895471|ref|YP_002920206.1| excinuclease ABC subunit C [Klebsiella pneumoniae NTUH-K2044]
 gi|330001010|ref|ZP_08303870.1| excinuclease ABC, C subunit [Klebsiella sp. MS 92-3]
 gi|238547788|dbj|BAH64139.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537814|gb|EGF64009.1| excinuclease ABC, C subunit [Klebsiella sp. MS 92-3]
          Length = 610

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L ++ + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLQQASVEE----IAKVPGISHALAEKIFYSLK 609


>gi|229586799|ref|YP_002845300.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
 gi|228021849|gb|ACP53557.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
          Length = 568

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++ 
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93


>gi|15892670|ref|NP_360384.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
 gi|81528161|sp|Q92HM4|RS1_RICCN RecName: Full=30S ribosomal protein S1
 gi|15619842|gb|AAL03285.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
          Length = 568

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++ 
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93


>gi|25026767|ref|NP_736821.1| recombination protein RecR [Corynebacterium efficiens YS-314]
 gi|259508096|ref|ZP_05750996.1| RecR protein [Corynebacterium efficiens YS-314]
 gi|73621481|sp|Q8FU10|RECR_COREF RecName: Full=Recombination protein recR
 gi|23492046|dbj|BAC17021.1| putative recombination protein [Corynebacterium efficiens YS-314]
 gi|259164319|gb|EEW48873.1| RecR protein [Corynebacterium efficiens YS-314]
          Length = 218

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
           ++++PG+  K A RI   L
Sbjct: 13  LSRLPGVGPKSAQRIAFHL 31


>gi|89899639|ref|YP_522110.1| PHP-like protein [Rhodoferax ferrireducens T118]
 gi|89344376|gb|ABD68579.1| PHP-like [Rhodoferax ferrireducens T118]
          Length = 580

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            L  + G+G +    +   L   T  +L ++        +  + G   K   R + E  G
Sbjct: 95  ELLKIPGLGPKRVRTLHRELGIETLAQLRQAAEQG---RVQSVHGFGAKS-ERQILEATG 150

Query: 131 KAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISA 166
           + +      +  DM  V +              A++A
Sbjct: 151 RLLQQERRYKWADMEPVAQALLADLHATPGVHRAVAA 187


>gi|313146708|ref|ZP_07808901.1| recombination protein recR [Bacteroides fragilis 3_1_12]
 gi|313135475|gb|EFR52835.1| recombination protein recR [Bacteroides fragilis 3_1_12]
          Length = 207

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 19  FSKLPGIGRKTAMRLVLHL 37


>gi|270294151|ref|ZP_06200353.1| recombination protein RecR [Bacteroides sp. D20]
 gi|270275618|gb|EFA21478.1| recombination protein RecR [Bacteroides sp. D20]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PG+  K A R++  L
Sbjct: 14  VNEFAKLPGVGRKTAMRLVLHL 35


>gi|229495545|ref|ZP_04389278.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317528|gb|EEN83428.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 235

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 81  VGARVA-MGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125
           +G   +     S       +   +   +S  + Q+PGI    A RI+
Sbjct: 87  IGPPTSDRSYTSSRKLPEGITLPLNQADSATLTQVPGIGATFAQRIV 133


>gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Bifidobacterium longum DJO10A]
 gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
 gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
          Length = 920

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 70  QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126
             + +L   S++ +G   A  + S + +   + +I     + +  I G+  +IA  ++  
Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807

Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177
                   + +G   +L +     +     E + +    +     ++   +L GY +D A
Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863

Query: 178 TTAVVS 183
             A++ 
Sbjct: 864 KEAIIE 869


>gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 920

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 70  QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126
             + +L   S++ +G   A  + S + +   + +I     + +  I G+  +IA  ++  
Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807

Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177
                   + +G   +L +     +     E + +    +     ++   +L GY +D A
Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863

Query: 178 TTAVVS 183
             A++ 
Sbjct: 864 KEAIIE 869


>gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8]
 gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
          Length = 920

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 70  QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126
             + +L   S++ +G   A  + S + +   + +I     + +  I G+  +IA  ++  
Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807

Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177
                   + +G   +L +     +     E + +    +     ++   +L GY +D A
Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863

Query: 178 TTAVVS 183
             A++ 
Sbjct: 864 KEAIIE 869


>gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68]
 gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68]
          Length = 920

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 70  QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126
             + +L   S++ +G   A  + S + +   + +I     + +  I G+  +IA  ++  
Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807

Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177
                   + +G   +L +     +     E + +    +     ++   +L GY +D A
Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863

Query: 178 TTAVVS 183
             A++ 
Sbjct: 864 KEAIIE 869


>gi|203284372|ref|YP_002222112.1| recombination protein RecR [Borrelia duttonii Ly]
 gi|201083815|gb|ACH93406.1| recombination protein RecR [Borrelia duttonii Ly]
          Length = 194

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 101 SIILQNSKVIAQIPGISMKIASRIMTE 127
            II    ++++++PGI  K A+R++ +
Sbjct: 1   MIIQDLIELVSKLPGIGKKTAARMVYD 27


>gi|15613826|ref|NP_242129.1| hypothetical protein BH1263 [Bacillus halodurans C-125]
 gi|10173879|dbj|BAB04982.1| BH1263 [Bacillus halodurans C-125]
          Length = 391

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 33/80 (41%), Gaps = 25/80 (31%)

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD 142
            + + G++  +++                + PGI  K A +I+           ++ +Q 
Sbjct: 95  PKTSQGIIRYLSSD---------------RFPGIGKKTAQQIV----------DTLGEQA 129

Query: 143 MSCVNKEQAHICSMPSFAIN 162
           +S + ++++ + ++P  +  
Sbjct: 130 LSRIVEDESALDAVPKLSKE 149


>gi|302561257|ref|ZP_07313599.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000]
 gi|302478875|gb|EFL41968.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000]
          Length = 139

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 18/94 (19%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L ++ D    F  T+ R              R  F    L  V G+G      ++  
Sbjct: 10  LYLLQRVRDEAHRFAITYQR---------AKRAKR--FRSGPLDDVPGLGETRKQALIKH 58

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +  +L  + I Q    I  +PGI  K A  I+
Sbjct: 59  FGSVKKLRSATIDQ----ICDVPGIGRKTAETIV 88


>gi|149278408|ref|ZP_01884545.1| recombination protein [Pedobacter sp. BAL39]
 gi|149230778|gb|EDM36160.1| recombination protein [Pedobacter sp. BAL39]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131
               +++PG+  K A R++  L GK
Sbjct: 12  VNEFSRLPGVGQKTALRLVLHLLGK 36


>gi|160872916|ref|ZP_02063048.1| recombination protein RecR [Rickettsiella grylli]
 gi|159121715|gb|EDP47053.1| recombination protein RecR [Rickettsiella grylli]
          Length = 198

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
           +PG+  K A R++  L  KA   +  + + ++   +E  +     + +   I AL +
Sbjct: 17  LPGVGPKSAQRMVFHLLEKARGDALTLAKMITQTVQEIGNCEHCRNLSETPICALCS 73


>gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705]
 gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705]
          Length = 920

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 70  QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126
             + +L   S++ +G   A  + S + +   + +I     + +  I G+  +IA  ++  
Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807

Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177
                   + +G   +L +     +     E + +    +     ++   +L GY +D A
Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863

Query: 178 TTAVVS 183
             A++ 
Sbjct: 864 KEAIIE 869


>gi|89898331|ref|YP_515441.1| recombination protein RecR [Chlamydophila felis Fe/C-56]
 gi|123483333|sp|Q254J2|RECR_CHLFF RecName: Full=Recombination protein recR
 gi|89331703|dbj|BAE81296.1| recombination and repair [Chlamydophila felis Fe/C-56]
          Length = 200

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQ 141
              + ++PGI  K A ++  EL    + +  +L     +
Sbjct: 12  ISFLRKLPGIGFKTAEKLAFELLDWEQDQLEALGKAFSE 50


>gi|257869742|ref|ZP_05649395.1| helicase RecD/TraA [Enterococcus gallinarum EG2]
 gi|257803906|gb|EEV32728.1| helicase RecD/TraA [Enterococcus gallinarum EG2]
          Length = 858

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 112 QIPGISMKIASRIM 125
           + PGI  K A +I+
Sbjct: 98  KFPGIGKKTAEKIV 111


>gi|154499874|ref|ZP_02037912.1| hypothetical protein BACCAP_03531 [Bacteroides capillosus ATCC
           29799]
 gi|150271472|gb|EDM98729.1| hypothetical protein BACCAP_03531 [Bacteroides capillosus ATCC
           29799]
          Length = 738

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 68  DRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           +R  F  L S  V+G+GA  A  ++       L  +++ ++ + + +I GI+ K A
Sbjct: 82  ERAIFDYLASGAVRGIGAATARKIVEEFGGEAL--TVLEEHPEQLTKIHGITRKRA 135


>gi|145298808|ref|YP_001141649.1| recombination protein RecR [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166221920|sp|A4SLX9|RECR_AERS4 RecName: Full=Recombination protein recR
 gi|142851580|gb|ABO89901.1| recombination protein RecR [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 200

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
           K +  +PG+  K A R+   L  +  S    + Q ++    E  H     +F  NA+
Sbjct: 12  KALQVLPGVGPKSAQRMAFTLLERERSGGLRLAQLLNRALTEIGHCSHCRTFTENAL 68


>gi|304314106|ref|YP_003849253.1| DNA mismatch recognition protein MutS [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587565|gb|ADL57940.1| predicted DNA mismatch recognition protein MutS
           [Methanothermobacter marburgensis str. Marburg]
          Length = 642

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 73  MLLQSVQGVGARVAMGVLSRITAT-ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
             L  V G+G R+A  ++  +    EL++++       IA I GIS + A  I +EL
Sbjct: 10  EALTDVSGIGERLAQKIIDELGGEKELLKAVENLEIDRIASIEGISQRKAIEITSEL 66


>gi|302768505|ref|XP_002967672.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
 gi|300164410|gb|EFJ31019.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
          Length = 717

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM EL+ K   +S +V  D   +    +       +++  +  ++ LGY        
Sbjct: 127 AQQIMVELRQK-RKVSELVDCDAMGLLVMASARVGTAHYSLGVLRTMLELGYHPP--VKV 183

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
             +V+ K     DD+Q+   AL+
Sbjct: 184 WSAVVSKLGKNVDDAQL---ALK 203


>gi|297565936|ref|YP_003684908.1| excinuclease ABC subunit C [Meiothermus silvanus DSM 9946]
 gi|296850385|gb|ADH63400.1| excinuclease ABC, C subunit [Meiothermus silvanus DSM 9946]
          Length = 594

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           ++ G+G +    +L++ +  E ++++   +++ +A++PG+  + A 
Sbjct: 542 NIPGIGPKRKEALLAQFSTLEELKAM---DAERLAKLPGMDKRSAE 584


>gi|218130919|ref|ZP_03459723.1| hypothetical protein BACEGG_02520 [Bacteroides eggerthii DSM 20697]
 gi|217987263|gb|EEC53594.1| hypothetical protein BACEGG_02520 [Bacteroides eggerthii DSM 20697]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PG+  K A R++  L
Sbjct: 14  VNEFAKLPGVGRKTAMRLVLHL 35


>gi|206901227|ref|YP_002251790.1| recombination protein RecR [Dictyoglomus thermophilum H-6-12]
 gi|206740330|gb|ACI19388.1| recombination protein RecR [Dictyoglomus thermophilum H-6-12]
          Length = 200

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 110 IAQIPGISMKIASRI 124
           + +IPGI  K A RI
Sbjct: 14  LTKIPGIGPKSAQRI 28


>gi|147676388|ref|YP_001210603.1| recombinational DNA repair protein [Pelotomaculum thermopropionicum
           SI]
 gi|229470332|sp|A5D6B3|RECR_PELTS RecName: Full=Recombination protein recR
 gi|146272485|dbj|BAF58234.1| recombinational DNA repair protein [Pelotomaculum thermopropionicum
           SI]
          Length = 200

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + +A++PGI  K A R+
Sbjct: 12  IEQLARLPGIGPKTAQRL 29


>gi|119485345|ref|ZP_01619673.1| recombination protein RecR [Lyngbya sp. PCC 8106]
 gi|119457101|gb|EAW38227.1| recombination protein RecR [Lyngbya sp. PCC 8106]
          Length = 189

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + + ++PG+  K A R+
Sbjct: 2   IEQLQRLPGVGPKTAQRL 19


>gi|53713342|ref|YP_099334.1| recombination protein RecR [Bacteroides fragilis YCH46]
 gi|60681587|ref|YP_211731.1| recombination protein RecR [Bacteroides fragilis NCTC 9343]
 gi|253565320|ref|ZP_04842775.1| recombination protein recR [Bacteroides sp. 3_2_5]
 gi|255008967|ref|ZP_05281093.1| recombination protein RecR [Bacteroides fragilis 3_1_12]
 gi|265763415|ref|ZP_06091983.1| recombination protein RecR [Bacteroides sp. 2_1_16]
 gi|73621459|sp|Q5LDK8|RECR_BACFN RecName: Full=Recombination protein recR
 gi|73621460|sp|Q64UM9|RECR_BACFR RecName: Full=Recombination protein recR
 gi|52216207|dbj|BAD48800.1| recombination protein RecR [Bacteroides fragilis YCH46]
 gi|60493021|emb|CAH07801.1| putative RecR-family recombination protein [Bacteroides fragilis
           NCTC 9343]
 gi|251945599|gb|EES86006.1| recombination protein recR [Bacteroides sp. 3_2_5]
 gi|263256023|gb|EEZ27369.1| recombination protein RecR [Bacteroides sp. 2_1_16]
 gi|301163145|emb|CBW22694.1| putative RecR-family recombination protein [Bacteroides fragilis
           638R]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 17  FSKLPGIGRKTAMRLVLHL 35


>gi|325570817|ref|ZP_08146500.1| exodeoxyribonuclease V alpha subunit [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156327|gb|EGC68509.1| exodeoxyribonuclease V alpha subunit [Enterococcus casseliflavus
           ATCC 12755]
          Length = 886

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 107 SKVIA--QIPGISMKIASRIM 125
              ++  + PGI  K A +I+
Sbjct: 91  IAYLSGEKFPGIGKKTAEKIV 111


>gi|172058084|ref|YP_001814544.1| RecD/TraA family helicase [Exiguobacterium sibiricum 255-15]
 gi|171990605|gb|ACB61527.1| helicase, RecD/TraA family [Exiguobacterium sibiricum 255-15]
          Length = 741

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           S  G+G + A  ++  +    +   IIL++SK + ++PG+  K A
Sbjct: 97  SFTGIGPKTAKNIVDALGEDAID--IILKDSKALDRVPGLKQKQA 139


>gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 920

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 70  QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126
             + +L   S++ +G   A  + S + +   + +I     + +  I G+  +IA  ++  
Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807

Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177
                   + +G   +L +     +     E + +    +     ++   +L GY +D A
Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863

Query: 178 TTAVVS 183
             A++ 
Sbjct: 864 KEAIIE 869


>gi|209522777|ref|ZP_03271335.1| recombination protein RecR [Arthrospira maxima CS-328]
 gi|209496826|gb|EDZ97123.1| recombination protein RecR [Arthrospira maxima CS-328]
          Length = 208

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            +   ++PGI  K A R+  
Sbjct: 21  IEQFQRLPGIGPKTAQRLAL 40


>gi|160887705|ref|ZP_02068708.1| hypothetical protein BACUNI_00106 [Bacteroides uniformis ATCC 8492]
 gi|317478909|ref|ZP_07938056.1| recombination protein RecR [Bacteroides sp. 4_1_36]
 gi|156862836|gb|EDO56267.1| hypothetical protein BACUNI_00106 [Bacteroides uniformis ATCC 8492]
 gi|316904886|gb|EFV26693.1| recombination protein RecR [Bacteroides sp. 4_1_36]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PG+  K A R++  L
Sbjct: 14  VNEFAKLPGVGRKTAMRLVLHL 35


>gi|262043445|ref|ZP_06016568.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039187|gb|EEW40335.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 610

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L ++ + +    IA++PGIS  +A +I   LK
Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLQQASVEE----IAKVPGISHALAEKIFYSLK 609


>gi|227529029|ref|ZP_03959078.1| exodeoxyribonuclease V alpha subunit [Lactobacillus vaginalis ATCC
           49540]
 gi|227351041|gb|EEJ41332.1| exodeoxyribonuclease V alpha subunit [Lactobacillus vaginalis ATCC
           49540]
          Length = 827

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 111 AQIPGISMKIASRIMTELK----GKAISLSSVVQ--QDMSCVNKEQAHICSMPSFAINAI 164
            Q PG+  K A +I+ +L      K  +   ++   +    +        +        I
Sbjct: 109 KQFPGVGKKTAEKIVDQLGIHAIDKITADPHILDGLKLREAIRTSLVENLNANQGMDQII 168

Query: 165 SALVNLGY 172
             L +LG+
Sbjct: 169 IGLNDLGF 176


>gi|170078503|ref|YP_001735141.1| hypothetical protein SYNPCC7002_A1898 [Synechococcus sp. PCC 7002]
 gi|169886172|gb|ACA99885.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 520

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 13/60 (21%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
           + L+++ G+G  +A G++     + L +         + ++ GI  K A     +L GK 
Sbjct: 472 IELETLPGIGPSLAQGIIEGRPYSGLTD---------LQRVSGIGEKKA----ADLAGKV 518


>gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT]
 gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
          Length = 749

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 65  SDLDRQWFMLLQSV-QGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
           +  ++Q    L S   GVG  VA  +L    +   ++ +   +    +  +  +  K A+
Sbjct: 684 TLKEQQ--EYLISALPGVGPSVARNLLRHFGSVERIMTASEGE----LMSVDKVGPKTAA 737

Query: 123 RI 124
           RI
Sbjct: 738 RI 739


>gi|167038578|ref|YP_001666156.1| recombination protein RecR [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116973|ref|YP_004187132.1| recombination protein RecR [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|326390314|ref|ZP_08211873.1| recombination protein RecR [Thermoanaerobacter ethanolicus JW 200]
 gi|229470344|sp|B0K800|RECR_THEP3 RecName: Full=Recombination protein recR
 gi|166857412|gb|ABY95820.1| recombination protein RecR [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319930064|gb|ADV80749.1| recombination protein RecR [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|325993591|gb|EGD52024.1| recombination protein RecR [Thermoanaerobacter ethanolicus JW 200]
          Length = 199

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + ++++PGI  K A R+
Sbjct: 12  IEELSKLPGIGPKTAQRL 29


>gi|271965900|ref|YP_003340096.1| exodeoxyribonuclease V [Streptosporangium roseum DSM 43021]
 gi|270509075|gb|ACZ87353.1| Exodeoxyribonuclease V [Streptosporangium roseum DSM 43021]
          Length = 738

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G ++A  ++    A  L   II    + + ++PG+  K
Sbjct: 100 IKGIGPKMAERIVDHFGADTLQ--IIETAPERLVEVPGLGPK 139


>gi|167561490|ref|ZP_02354406.1| TPR domain protein [Burkholderia oklahomensis EO147]
          Length = 606

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG     A
Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPSSPRAAQVDAALLVLGGKPADA 163

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 164 QPMLAQELARATGENRGEAII--ALQAL 189


>gi|152970955|ref|YP_001336064.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150955804|gb|ABR77834.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 588

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L ++ + +    IA++PGIS  +A +I   LK
Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLQQASVEE----IAKVPGISHALAEKIFYSLK 587


>gi|329955111|ref|ZP_08296092.1| recombination protein RecR [Bacteroides clarus YIT 12056]
 gi|328526401|gb|EGF53416.1| recombination protein RecR [Bacteroides clarus YIT 12056]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PG+  K A R++  L
Sbjct: 14  VNEFAKLPGVGRKTAMRLVLHL 35


>gi|228985620|ref|ZP_04145773.1| cell wall hydrolase/autolysin [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774015|gb|EEM22428.1| cell wall hydrolase/autolysin [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 548

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 4   KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLF 48
           KIKGN+ G  ++ +L+    + Y +      L  +  IGD   ++
Sbjct: 478 KIKGNVTGKSDNSILVSSNNITYEVETSTEVLQDII-IGDTVNVY 521


>gi|295103877|emb|CBL01421.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif
           [Faecalibacterium prausnitzii SL3/3]
          Length = 452

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 61  FG-FLSDLDRQWFMLLQSVQGVGARVAMGV-----LSRITATELVES 101
           +G F  D++R  F +L  V G+G + A  +      + +   EL   
Sbjct: 321 YGLFPVDVNRAPFEMLLRVPGIGPKSARRIWRARKQAALGLDELKRM 367


>gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
 gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
          Length = 679

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 19/115 (16%)

Query: 72  FMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM----- 125
           F+    ++GVG   A  + +   T   L ++    + + + + P +    A  I+     
Sbjct: 517 FIYALGIRGVGETTARMLANTFQTLDALRQA----DLEALKKTPDVGDITAEWILDFFQA 572

Query: 126 ---TELKGKAIS----LSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLG 171
               E+  + ++      + +      +N E   +    S     +A   L  LG
Sbjct: 573 PHNLEVLDRLLAAGIHWDAPIAPTRQPLNGESWVVTGTLSSMGRDDATQLLQALG 627


>gi|257867867|ref|ZP_05647520.1| helicase RecD/TraA [Enterococcus casseliflavus EC30]
 gi|257874196|ref|ZP_05653849.1| helicase RecD/TraA [Enterococcus casseliflavus EC10]
 gi|257801950|gb|EEV30853.1| helicase RecD/TraA [Enterococcus casseliflavus EC30]
 gi|257808360|gb|EEV37182.1| helicase RecD/TraA [Enterococcus casseliflavus EC10]
          Length = 884

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 107 SKVIA--QIPGISMKIASRIM 125
              ++  + PGI  K A +I+
Sbjct: 91  IAYLSGEKFPGIGKKTAEKIV 111


>gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska
           E43]
 gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 667

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 25/181 (13%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90
            TLSC  ++       V  +  +D + + GF      Q F  L  +S+  +  ++    L
Sbjct: 425 NTLSCKPQL---VKTIVH-YASRDAMNIAGFSEKTAEQLFEKLNIKSISDL-YKLKKEDL 479

Query: 91  SRIT------ATELVESIILQNSKVIAQ------IPGISMKIASRIMTELKG----KAIS 134
             +       A  L+ ++       +        IP + +K A  I+ + K     K  +
Sbjct: 480 INLEKFGDKKAENLLNAVEGSKECKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT 539

Query: 135 LSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD-QATTAVVSVLKKEKNIA 192
              +V  QD+  +  +           I+ I  L++LG          V S+ K +  +A
Sbjct: 540 FEELVSVQDVGDIVAQDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVA 599

Query: 193 D 193
            
Sbjct: 600 T 600


>gi|160942796|ref|ZP_02090037.1| hypothetical protein FAEPRAM212_00273 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445961|gb|EDP22964.1| hypothetical protein FAEPRAM212_00273 [Faecalibacterium prausnitzii
           M21/2]
          Length = 452

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 61  FG-FLSDLDRQWFMLLQSVQGVGARVAMGV-----LSRITATELVES 101
           +G F  D++R  F +L  V G+G + A  +      + +   EL   
Sbjct: 321 YGLFPVDVNRAPFEMLLRVPGIGPKSARRIWRARKQAALGLDELKRM 367


>gi|313608726|gb|EFR84551.1| ComE operon protein 1 [Listeria monocytogenes FSL F2-208]
          Length = 155

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 104 LQQVPGIGESKATAIIEHREKEGLFQTIED-----LKNVSGIGEKTVEKL 148


>gi|302389951|ref|YP_003825772.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200579|gb|ADL08149.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 572

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 74  LLQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKIASRIMTE--- 127
            +  + G+GA+    +   +   T  EL ++        +  +PGI +K   + + +   
Sbjct: 92  EMLKIPGLGAKRIKTIYDALNITTIDELEQAAKSH---KLRGLPGIGVKT-EQAILKGIQ 147

Query: 128 -LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
            LKGKA  +       ++   K+             A
Sbjct: 148 MLKGKAGKMLLSTALYLAEEIKDMLKFLPAVEKVEEA 184


>gi|269958956|ref|YP_003328745.1| excinuclease ABC subunit C [Anaplasma centrale str. Israel]
 gi|269848787|gb|ACZ49431.1| excinuclease ABC subunit C [Anaplasma centrale str. Israel]
          Length = 613

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L  + GVG+     +++   +   +  +   +    I+++PGIS+K+A RI   LK
Sbjct: 556 LCDIPGVGSARRRALITYFGSIDGVKRARTDE----ISKVPGISIKLAQRIYAYLK 607


>gi|219670324|ref|YP_002460759.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540584|gb|ACL22323.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 216

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 102 IILQNSKVIAQIPGISMKIASRIM 125
           I   ++  + ++PGI   +A RI+
Sbjct: 156 INTADAAELDKLPGIGPALAERII 179


>gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
 gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 797

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 33/145 (22%)

Query: 56  DQIRLFGFLSDLDRQ----WFMLL--QSVQGVGARVAMGVLSRI-TATELVESIILQNSK 108
           + +RLF    +L++      +  L   S++ VG   A  + +   + T L  +    +  
Sbjct: 593 NTLRLF---DELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRAAAEAGDRD 649

Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA--- 163
            +A+I G+       I+ +      +L     +D     V++  A   +M      +   
Sbjct: 650 RLAEIDGVGP-----IIAD------ALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPR 698

Query: 164 -ISALV-----NL-GYGQDQATTAV 181
            +  L      +L G+ +D A  A+
Sbjct: 699 TLEGLTVVVTGSLEGFSRDSAKEAI 723


>gi|56416629|ref|YP_153703.1| excinuclease ABC subunit C [Anaplasma marginale str. St. Maries]
 gi|81359188|sp|Q5PB81|UVRC_ANAMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56387861|gb|AAV86448.1| excinuclease ABC subunit C [Anaplasma marginale str. St. Maries]
          Length = 613

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L  + GVG+     +++   +   +  +   +    I+++PGIS+K+A RI   LK
Sbjct: 556 LCDIPGVGSARRRALITYFGSIDGVKRARTDE----ISKVPGISIKLAQRIYAYLK 607


>gi|56421096|ref|YP_148414.1| ATP-dependent exonuclease V [Geobacillus kaustophilus HTA426]
 gi|56380938|dbj|BAD76846.1| ATP-dependent exonuclease V [Geobacillus kaustophilus HTA426]
          Length = 786

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 28/101 (27%)

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
           +G+G + A  ++  +     + +I+  + + + ++P ++ K A ++              
Sbjct: 107 KGIGKKTAAAIVETLG-ENAIAAILR-DPRALERVPKLTKKKAKQL-------------- 150

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
                                    + AL  LG+G   A  
Sbjct: 151 ------------YDALRAHEGLEQTMIALAQLGFGPQLAMK 179


>gi|194335563|ref|YP_002017357.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308040|gb|ACF42740.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1]
          Length = 383

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            +R   + L  + G+G    +  ++      L + ++  +   + Q+ GI   +A ++
Sbjct: 8   EERILLLALTLIPGIGPAR-IKAITTFLHNRLAD-VLHCDVGELIQVSGIGESLARQM 63


>gi|317476230|ref|ZP_07935481.1| recombination protein RecR [Bacteroides eggerthii 1_2_48FAA]
 gi|316907641|gb|EFV29344.1| recombination protein RecR [Bacteroides eggerthii 1_2_48FAA]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PG+  K A R++  L
Sbjct: 14  VNEFAKLPGVGRKTAMRLVLHL 35


>gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 920

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 70  QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126
             + +L   S++ +G   A  + S + +   + +I     + +  I G+  +IA  ++  
Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807

Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177
                   + +G   +L +     +     E + +    +     ++   +L GY +D A
Sbjct: 808 FAAAREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863

Query: 178 TTAVVS 183
             A++ 
Sbjct: 864 KEAIIE 869


>gi|145294361|ref|YP_001137182.1| recombination protein RecR [Corynebacterium glutamicum R]
 gi|172044393|sp|A4QAN3|RECR_CORGB RecName: Full=Recombination protein recR
 gi|140844281|dbj|BAF53280.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 218

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
           ++++PG+  K A RI   L
Sbjct: 13  LSRLPGVGPKSAQRIAFHL 31


>gi|89895894|ref|YP_519381.1| hypothetical protein DSY3148 [Desulfitobacterium hafniense Y51]
 gi|89335342|dbj|BAE84937.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 219

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 102 IILQNSKVIAQIPGISMKIASRIM 125
           I   ++  + ++PGI   +A RI+
Sbjct: 159 INTADAAELDKLPGIGPALAERII 182


>gi|226944590|ref|YP_002799663.1| excinuclease ABC subunit C [Azotobacter vinelandii DJ]
 gi|259710334|sp|C1DIK7|UVRC_AZOVD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226719517|gb|ACO78688.1| excinuclease ABC, C subunit [Azotobacter vinelandii DJ]
          Length = 607

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+ V GVG +    +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 554 LEEVAGVGPKRRRELLKFFGGLQELSRASIDE----IAKAPGISKKLADSI 600


>gi|313637785|gb|EFS03136.1| ComE operon protein 1 [Listeria seeligeri FSL S4-171]
          Length = 201

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ+V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 150 LQTVPGIGESKATAIIEYREKEGLFQTIED-----LQNVTGIGEKTIEKL 194


>gi|325106521|ref|YP_004276175.1| endonuclease III [Pedobacter saltans DSM 12145]
 gi|324975369|gb|ADY54353.1| endonuclease III [Pedobacter saltans DSM 12145]
          Length = 239

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 102 IILQNSKVIAQIPGISMKIA 121
           I+ ++ K + ++PG+  K A
Sbjct: 104 IVPEDVKDLQKMPGVGRKTA 123


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 28/118 (23%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            Y     + TLS L    +   +++ T   +D I+L    SD  R    +L + +GVG  
Sbjct: 108 GYEADDILGTLS-LDAEKEGYEVYIVTG-DRDAIQL---ASDNTR----VLITKKGVGEV 158

Query: 85  V---AMGVLS--RITATELVESIILQNSKVIAQ--------IPGISMKIASRIMTELK 129
               A  V+    +T  + +      + K +          IPGI  K   +++ E K
Sbjct: 159 EEYDAQAVMDRYSLTPDQFI------DLKGLMGDKSDNIPGIPGIGEKTGIKLLLEYK 210


>gi|297543596|ref|YP_003675898.1| recombination protein RecR [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841371|gb|ADH59887.1| recombination protein RecR [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 199

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + ++++PGI  K A R+
Sbjct: 12  IEELSKLPGIGPKTAQRL 29


>gi|257876760|ref|ZP_05656413.1| helicase RecD/TraA [Enterococcus casseliflavus EC20]
 gi|257810926|gb|EEV39746.1| helicase RecD/TraA [Enterococcus casseliflavus EC20]
          Length = 884

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 107 SKVIA--QIPGISMKIASRIM 125
              ++  + PGI  K A +I+
Sbjct: 91  IAYLSGEKFPGIGKKTAEKIV 111


>gi|303324063|ref|XP_003072019.1| BTB/POZ domain containing protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|240111729|gb|EER29874.1| BTB/POZ domain containing protein [Coccidioides posadasii C735
           delta SOWgp]
          Length = 672

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I TEL+ K   + +   Q  S +        S+ S +          G+   +    
Sbjct: 567 AQKIATELQDKMTIMPADAPQSGSDLGTSPYLSDSLGSSSQ---------GFTTPEEDEG 617

Query: 181 VVSVLKKEKNIADDSQIIR 199
           V ++  +    +    IIR
Sbjct: 618 VDALTNRLPKDSPTGPIIR 636


>gi|222474994|ref|YP_002563409.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str.
           Florida]
 gi|255002974|ref|ZP_05277938.1| excinuclease ABC subunit C [Anaplasma marginale str. Puerto Rico]
 gi|222419130|gb|ACM49153.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str.
           Florida]
          Length = 613

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L  + GVG+     +++   +   +  +   +    I+++PGIS+K+A RI   LK
Sbjct: 556 LCDIPGVGSARRRALITYFGSIDGVKRARTDE----ISKVPGISIKLAQRIYAYLK 607


>gi|254430840|ref|ZP_05044543.1| excinuclease ABC, C subunit [Cyanobium sp. PCC 7001]
 gi|197625293|gb|EDY37852.1| excinuclease ABC, C subunit [Cyanobium sp. PCC 7001]
          Length = 667

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 17/106 (16%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQIRLFGFL------SDLDRQWFMLLQSV 78
            ++ P    +      +   L V+    +R +  R   F          +R     L  +
Sbjct: 541 EVFVPG---ARQPLESEAEQLGVQLLRRLRDEAHR---FAVSFHRQQRGERMKRSRLSDI 594

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            G+G +    +L+   +   +++I L +   IA+ PG+   +A ++
Sbjct: 595 PGLGPKRVKDLLAHFRS---IDAIQLASPAQIAEAPGVGPALARQV 637


>gi|284053205|ref|ZP_06383415.1| recombination protein RecR [Arthrospira platensis str. Paraca]
 gi|291567039|dbj|BAI89311.1| recombination protein RecR [Arthrospira platensis NIES-39]
          Length = 208

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            +   ++PGI  K A R+  
Sbjct: 21  IEQFQRLPGIGPKTAQRLAL 40


>gi|203287906|ref|YP_002222921.1| recombination protein RecR [Borrelia recurrentis A1]
 gi|201085126|gb|ACH94700.1| recombination protein RecR [Borrelia recurrentis A1]
          Length = 194

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 101 SIILQNSKVIAQIPGISMKIASRIMTE 127
            II    ++++++PGI  K A+R++ +
Sbjct: 1   MIIQDLIELVSKLPGIGKKTAARMVYD 27


>gi|157737623|ref|YP_001490306.1| exodeoxyribonuclease V, alpha subunit [Arcobacter butzleri RM4018]
 gi|157699477|gb|ABV67637.1| exodeoxyribonuclease V, alpha subunit [Arcobacter butzleri RM4018]
          Length = 775

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 61  FG----FLSDL--DRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           +G    F +    + + F  L   V+GVG + A  +L + +  EL+E I+      +   
Sbjct: 66  YGVQFEFDTLELKEAEMFFFLTKIVKGVGKKFASELLEKYSENELIE-ILNDRPNELLNF 124

Query: 114 PGISMKIASRIM 125
            GI  K    I+
Sbjct: 125 KGIKDKKLETIV 136


>gi|297171377|gb|ADI22381.1| nuclease subunit of the excinuclease complex [uncultured nuHF2
           cluster bacterium HF0500_02A10]
          Length = 418

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 47  LFVETHMRQDQIRLFGFLSDLDRQWFM------LLQSVQGVGA-RVAMGVLSRITATELV 99
           L V   +R +  R   F    +R+          L  + G+G  +  + +L   +    V
Sbjct: 336 LHVLQRIRDEAHR---FAVTYNRKLRRNRTVSSDLSEIPGIGPEKQKLLLLRFGS----V 388

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128
            +I   N + IA+I G+ + +A RI+T L
Sbjct: 389 RAIKSANVEEIAEISGLGLVLADRIITYL 417


>gi|313633203|gb|EFS00081.1| ComE operon protein 1 [Listeria seeligeri FSL N1-067]
          Length = 202

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ+V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 151 LQTVPGIGESKATAIIEYREKEGLFQTIED-----LQNVTGIGEKTIEKL 195


>gi|308048622|ref|YP_003912188.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
 gi|307630812|gb|ADN75114.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
          Length = 356

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 110 IAQIPGISMKIASRI 124
           + +IPG+  K A R+
Sbjct: 184 LRKIPGVGPKTAERL 198


>gi|291557374|emb|CBL34491.1| endonuclease III [Eubacterium siraeum V10Sc8a]
          Length = 212

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131
            + + ++PG+  K A+ I+ +L GK
Sbjct: 109 IEQLVKLPGVGRKTANLIVGDLYGK 133


>gi|317126956|ref|YP_004093238.1| RuvA domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315471904|gb|ADU28507.1| RuvA domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 536

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI  + K           Q M+ + +             +A   L  LG+  D A  AV
Sbjct: 415 ERITVDQK-----------QVMNSLQEGAKRKNEQLQLIDDATFRLGMLGFNNDVAVKAV 463

Query: 182 VSVLKKEKNIADDSQIIRLA 201
              + +   + + SQI++ A
Sbjct: 464 QKAISENNQLEEVSQIVKDA 483


>gi|289809921|ref|ZP_06540550.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 147

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 94  TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 146


>gi|198275302|ref|ZP_03207833.1| hypothetical protein BACPLE_01461 [Bacteroides plebeius DSM 17135]
 gi|198271885|gb|EDY96155.1| hypothetical protein BACPLE_01461 [Bacteroides plebeius DSM 17135]
          Length = 236

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            A++PGI  K A R++  L
Sbjct: 48  FAKLPGIGRKTAMRLVLHL 66


>gi|167750867|ref|ZP_02422994.1| hypothetical protein EUBSIR_01851 [Eubacterium siraeum DSM 15702]
 gi|167656046|gb|EDS00176.1| hypothetical protein EUBSIR_01851 [Eubacterium siraeum DSM 15702]
          Length = 212

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131
            + + ++PG+  K A+ I+ +L GK
Sbjct: 109 IEQLVKLPGVGRKTANLIVGDLYGK 133


>gi|167568720|ref|ZP_02361594.1| TPR domain protein [Burkholderia oklahomensis C6786]
          Length = 606

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG     A
Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPSSPRAAQVDAALLVLGGKPADA 163

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 164 QPMLAQELARATGENRGEAII--ALQAL 189


>gi|19551495|ref|NP_599497.1| recombination protein RecR [Corynebacterium glutamicum ATCC 13032]
 gi|62389142|ref|YP_224544.1| recombination protein RecR [Corynebacterium glutamicum ATCC 13032]
 gi|24212182|sp|Q8NTQ8|RECR_CORGL RecName: Full=Recombination protein recR
 gi|21323008|dbj|BAB97637.1| Recombinational DNA repair protein [Corynebacterium glutamicum ATCC
           13032]
 gi|41324475|emb|CAF18815.1| DNA repair protein (RecF pathway) [Corynebacterium glutamicum ATCC
           13032]
          Length = 218

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
           ++++PG+  K A RI   L
Sbjct: 13  LSRLPGVGPKSAQRIAFHL 31


>gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1]
 gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1]
 gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8]
          Length = 691

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+    ++GVG   A+ +  +    EL   I   + + +  +P I    A  I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578


>gi|320537739|ref|ZP_08037664.1| ribosomal protein S1 [Treponema phagedenis F0421]
 gi|320145418|gb|EFW37109.1| ribosomal protein S1 [Treponema phagedenis F0421]
          Length = 803

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 6   KGNIEGLYEDYVLIDVQGV--CYIIYCPIRTLSCLGKIGDFCTLFVE 50
           +G I  + +D V +DV G       + P+       K GD   +++E
Sbjct: 266 EGIIIQVTDDTVFVDVGGKSEG---HVPLTEFETAPKKGDAVRVYIE 309


>gi|300857564|ref|YP_003782547.1| recombination protein [Corynebacterium pseudotuberculosis FRC41]
 gi|300685018|gb|ADK27940.1| recombination protein [Corynebacterium pseudotuberculosis FRC41]
 gi|302205304|gb|ADL09646.1| Recombination protein RecR [Corynebacterium pseudotuberculosis
           C231]
 gi|302329858|gb|ADL20052.1| Recombination protein RecR [Corynebacterium pseudotuberculosis
           1002]
 gi|308275544|gb|ADO25443.1| Recombination protein RecR [Corynebacterium pseudotuberculosis I19]
          Length = 218

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
           ++++PG+  K A RI   L
Sbjct: 13  LSRLPGVGPKSAQRIAFHL 31


>gi|291333596|gb|ADD93289.1| excinuclease ABC subunit C [uncultured archaeon MedDCM-OCT-S09-C13]
          Length = 575

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+ V G+GA+    +L         + I   + + +  +PGI   +A RI
Sbjct: 523 LEDVLGLGAKKLQSLLRHFGG---RQGINNASIEDLKTVPGIGPSLAERI 569


>gi|262199755|ref|YP_003270964.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
 gi|262083102|gb|ACY19071.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
          Length = 586

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 17/102 (16%)

Query: 72  FMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           F+ L  + G+G +  M +   L   +  +L +++    +K +  + G   K         
Sbjct: 99  FVELSRIPGLGPKTLMRLRGELDVHSVDDLRKALE---AKKLRTLSGFGAKS-------- 147

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
                +L   +++        +  I      A    +AL  L
Sbjct: 148 ---EDNLRRAIERLGMSGKDRRTPIADALPIAQRITAALEAL 186


>gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E]
          Length = 691

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+    ++GVG   A+ +  +    EL   I   + + +  +P I    A  I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578


>gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1]
          Length = 691

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+    ++GVG   A+ +  +    EL   I   + + +  +P I    A  I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578


>gi|312878631|ref|ZP_07738484.1| transposase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794593|gb|EFR11069.1| transposase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 83

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 31  EEDLERLDTIPGVGRRTAEHIIAE 54


>gi|289577300|ref|YP_003475927.1| recombination protein RecR [Thermoanaerobacter italicus Ab9]
 gi|289527013|gb|ADD01365.1| recombination protein RecR [Thermoanaerobacter italicus Ab9]
          Length = 199

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + ++++PGI  K A R+
Sbjct: 12  IEELSKLPGIGPKTAQRL 29


>gi|86748302|ref|YP_484798.1| excinuclease ABC subunit C [Rhodopseudomonas palustris HaA2]
 gi|119367824|sp|Q2J0X3|UVRC_RHOP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|86571330|gb|ABD05887.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris HaA2]
          Length = 695

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81
           ++ P R    L +  D    F+   +R +  R   F+    R+          LQ + G+
Sbjct: 592 LFMPEREAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 646

Query: 82  GARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           G      +L    T  E+  +  L +   + ++PGIS + A RI
Sbjct: 647 GPSRKRALLHHFGTLKEIERA-SLGD---LGKVPGISAESARRI 686


>gi|289422277|ref|ZP_06424131.1| excinuclease ABC, C subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157328|gb|EFD05939.1| excinuclease ABC, C subunit [Peptostreptococcus anaerobius 653-L]
          Length = 607

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L  V G+G +  + ++S+     ++  + I +    I ++ GIS KIA  I+
Sbjct: 550 LDDVPGIGPKRKLALISKFKDIDKIRSASIDE----IMEVDGISKKIAEDIV 597


>gi|254468692|ref|ZP_05082098.1| A/G-specific adenine glycosylase [beta proteobacterium KB13]
 gi|207087502|gb|EDZ64785.1| A/G-specific adenine glycosylase [beta proteobacterium KB13]
          Length = 294

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGI 116
             F  L  + G+G   A  +LS     +   +I+  N K  + +  GI
Sbjct: 68  DTFESLIQLPGIGRSTAGAILSFCFKKKF--AILDGNVKRVLTRFFGI 113


>gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 663

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 34/167 (20%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL----------------Q 76
            TLSC  ++       V    R+  + + GF      Q F  L                 
Sbjct: 423 NTLSCKPQM---VKSIVHYACRE-AMNIAGFSERTAEQLFEKLNIKSISDLYKLKEEELI 478

Query: 77  SVQGVGARVAMGVLSRITAT---ELVESIILQNSKVIAQIPGISMKIASRIMTELKG--- 130
            ++  G + A  +L  I  +   EL   I          IP + +K A  +++  K    
Sbjct: 479 DLEKFGPKKAQNLLEAIENSKECELHAFI------YALGIPNVGVKTAKDLVSRFKSIEG 532

Query: 131 -KAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            K  +   +V   D+  +  +           +  I  L+ LG    
Sbjct: 533 LKNATFEELVSVPDVGDIVAQDVMSFFKEEKVLETIDELLALGVNPK 579


>gi|157961351|ref|YP_001501385.1| recombination protein RecR [Shewanella pealeana ATCC 700345]
 gi|189029375|sp|A8H2R3|RECR_SHEPA RecName: Full=Recombination protein recR
 gi|157846351|gb|ABV86850.1| recombination protein RecR [Shewanella pealeana ATCC 700345]
          Length = 199

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL++         +  +PG+  K A R+  +L  +     + +   ++    E  H  
Sbjct: 7   VDELIQ--------SLRCLPGVGPKSAQRMAFQLLERDRKAGAKLADSLAKAMSEVGHCQ 58

Query: 155 SMPSFAIN 162
           S  +F   
Sbjct: 59  SCRTFTEE 66


>gi|71278497|ref|YP_270358.1| recombination protein RecR [Colwellia psychrerythraea 34H]
 gi|123631494|sp|Q47XW2|RECR_COLP3 RecName: Full=Recombination protein recR
 gi|71144237|gb|AAZ24710.1| recombination protein RecR [Colwellia psychrerythraea 34H]
          Length = 201

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 22/58 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
              +  +PG+  K A R+  +L  +     S +   ++    +  H     +F   A+
Sbjct: 11  IDSLKCLPGVGAKSAQRMAFQLLERNRRGGSKLANTLAKAMTDIGHCQQCRNFTEEAL 68


>gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72]
          Length = 691

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+    ++GVG   A+ +  +    EL   I   + + +  +P I    A  I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578


>gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169]
          Length = 691

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+    ++GVG   A+ +  +    EL   I   + + +  +P I    A  I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578


>gi|323223339|gb|EGA07675.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
          Length = 297

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 244 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 296


>gi|313673334|ref|YP_004051445.1| DNA replication and repair protein recr [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940090|gb|ADR19282.1| DNA replication and repair protein RecR [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 200

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            K ++++PGI  K A R+  +L
Sbjct: 11  IKELSKLPGIGKKTALRLSMQL 32


>gi|309790483|ref|ZP_07685043.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6]
 gi|308227470|gb|EFO81138.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6]
          Length = 625

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           L+ + G+G +    +L    +   + ++ I +    IA +PG++ + A ++
Sbjct: 575 LEEIPGIGPKRKKALLKAFGSLDGIRQATIDE----IAAVPGMTKRAAEQL 621


>gi|282877375|ref|ZP_06286198.1| recombination protein RecR [Prevotella buccalis ATCC 35310]
 gi|281300427|gb|EFA92773.1| recombination protein RecR [Prevotella buccalis ATCC 35310]
          Length = 203

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               +++PGI  K A R++  L
Sbjct: 14  VNEFSKLPGIGRKTALRLVLHL 35


>gi|270684462|ref|ZP_06222837.1| UvrABC system, protein C [Haemophilus influenzae HK1212]
 gi|270316201|gb|EFA28168.1| UvrABC system, protein C [Haemophilus influenzae HK1212]
          Length = 118

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L++++GVGA+    +L  +     + ++ + +    IA +PGIS+K+A RI   LK 
Sbjct: 65  LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISLKLAERIFETLKN 117


>gi|290961316|ref|YP_003492498.1| ABC excision nuclease subunit C [Streptomyces scabiei 87.22]
 gi|260650842|emb|CBG73959.1| ABC excision nuclease subunit C [Streptomyces scabiei 87.22]
          Length = 676

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L ++ D    F  T+ R          +   ++ F    L  V G+G      +L  
Sbjct: 548 LYLLQRVRDEAHRFAITYQR----------TKRAKR-FRASPLDDVPGLGEARKQALLKH 596

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRI 124
             +  +L  + I Q    I ++PGI  K A  I
Sbjct: 597 FGSLKKLRSATIDQ----ICEVPGIGRKTAETI 625


>gi|260438631|ref|ZP_05792447.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292809225|gb|EFF68430.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 450

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSD----LDRQWFMLLQS 77
           V Y  +  +   S L     G         +     +R +GF +       R  F +L  
Sbjct: 257 VFYSAFVNVNNDSTLPSALNGPPLLREHRLYQADWLMRFYGFKAQDILSEARPDFNVL-- 314

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
              V  +   A+  L           I   +   + ++PGI +  A RI+
Sbjct: 315 ---VDPKCDWALRHLEYFPVE-----INRADYYSLLKVPGIGVNSAKRII 356


>gi|257053376|ref|YP_003131209.1| 50S ribosomal protein L32e [Halorhabdus utahensis DSM 12940]
 gi|256692139|gb|ACV12476.1| Ribosomal protein L32e [Halorhabdus utahensis DSM 12940]
          Length = 335

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 74  LLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124
            L  V G+G   A  +      T  +L E+    +   + ++ GI   +A+RI
Sbjct: 8   ELTDVSGIGEETAGALRESGFETIDDLREA----DEDALTEVTGIGNALAARI 56


>gi|163755946|ref|ZP_02163063.1| recombination protein recR [Kordia algicida OT-1]
 gi|161324117|gb|EDP95449.1| recombination protein recR [Kordia algicida OT-1]
          Length = 206

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           E    ++      I+Q+PGI  + A R++  L
Sbjct: 2   EFSSKLLENAVNEISQLPGIGKRTALRLVLHL 33


>gi|16332099|ref|NP_442827.1| recombination protein RecR [Synechocystis sp. PCC 6803]
 gi|3024523|sp|P74533|RECR_SYNY3 RecName: Full=Recombination protein recR
 gi|1653728|dbj|BAA18639.1| recombination protein [Synechocystis sp. PCC 6803]
          Length = 232

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 8/45 (17%)

Query: 84  RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           +  +G +       L+E         + ++P +  K A R+   L
Sbjct: 31  KRGLGTIYTPPLARLIE--------QLQRLPSVGPKTAQRLALHL 67


>gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1]
          Length = 691

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+    ++GVG   A+ +  +    EL   I   + + +  +P I    A  I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578


>gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7]
          Length = 691

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+    ++GVG   A+ +  +    EL   I   + + +  +P I    A  I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578


>gi|313889750|ref|ZP_07823392.1| helicase, RecD/TraA family [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121795|gb|EFR44892.1| helicase, RecD/TraA family [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 805

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 113 IPGISMKIASRIMTELK-----GKAISLSSVVQQDMSCVNKEQAHICS---MPSFAINAI 164
             GI  K A +I+ +L       K +   S ++         +    +   +       I
Sbjct: 95  FKGIGKKTAEKIV-QLYGENTIDKILEDPSQLETISGLSKANRQAFITKLKLNYGTEQII 153

Query: 165 SALVNLG 171
           + LV LG
Sbjct: 154 AGLVALG 160


>gi|260888483|ref|ZP_05899746.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185]
 gi|330838208|ref|YP_004412788.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185]
 gi|260861680|gb|EEX76180.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185]
 gi|329745972|gb|AEB99328.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185]
          Length = 727

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +R  F+   ++ GVG  +A  ++ +     L   II +    + ++ G+  K A++I
Sbjct: 82  ER--FLASGAIAGVGEAMAHRLVQKFGKETLE--IIEKKPSRLTEVAGVGKKTAAKI 134


>gi|206581932|pdb|3CMA|Y Chain Y, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|206581965|pdb|3CME|Y Chain Y, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
           Ribosomal Subunit Of Haloarcula Marismortui
          Length = 240

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 72  FMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  L  + GVG   A  +      +  ++  +    +   +A + GI   +A+RI
Sbjct: 14  YTELTDISGVGPSKAESLREAGFESVEDVRGA----DQSALADVSGIGNALAARI 64


>gi|254384741|ref|ZP_05000079.1| exodeoxyribonuclease V [Streptomyces sp. Mg1]
 gi|194343624|gb|EDX24590.1| exodeoxyribonuclease V [Streptomyces sp. Mg1]
          Length = 748

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G ++A  ++       L   +I    K + ++PG+  K
Sbjct: 99  IKGIGPKIADRIVEHFGLDTLE--VIESEPKRLIEVPGLGPK 138


>gi|3925822|dbj|BAA34648.1| RecR protein [Deinococcus radiodurans]
          Length = 220

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
              LV  I       ++++PGI  K A R+   L
Sbjct: 4   PPSLVSLIRE-----LSRLPGIGPKSAQRLAFHL 32


>gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1]
          Length = 691

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+    ++GVG   A+ +  +    EL   I   + + +  +P I    A  I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578


>gi|322835054|ref|YP_004215081.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
 gi|321170255|gb|ADW75954.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
          Length = 565

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           G G      +L    A  L+  +   N K +A +PGI +K A ++M
Sbjct: 437 GFGGATWQKLLDASPADSLISWLSF-NEKELAAVPGIGVKQAQKLM 481


>gi|319892647|ref|YP_004149522.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162343|gb|ADV05886.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464315|gb|ADX76468.1| ComE operon protein 1, putative [Staphylococcus pseudintermedius
           ED99]
          Length = 222

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  +++    L  + G+G   A  ++         +S+       +  + GI  K   ++
Sbjct: 166 TADEKE----LTQIPGIGPSKAQTIIKHREENGPFQSVED-----LKNVKGIGEKTFEKL 216


>gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
 gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
          Length = 691

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           F+    ++GVG   A+ +  +    EL   I   + + +  +P I    A  I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578


>gi|293373050|ref|ZP_06619419.1| recombination protein RecR [Bacteroides ovatus SD CMC 3f]
 gi|292632118|gb|EFF50727.1| recombination protein RecR [Bacteroides ovatus SD CMC 3f]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 17  FSKLPGIGRKTAMRLVLHL 35


>gi|262407940|ref|ZP_06084488.1| recombination protein RecR [Bacteroides sp. 2_1_22]
 gi|294644003|ref|ZP_06721785.1| recombination protein RecR [Bacteroides ovatus SD CC 2a]
 gi|294807757|ref|ZP_06766550.1| recombination protein RecR [Bacteroides xylanisolvens SD CC 1b]
 gi|262354748|gb|EEZ03840.1| recombination protein RecR [Bacteroides sp. 2_1_22]
 gi|292640656|gb|EFF58892.1| recombination protein RecR [Bacteroides ovatus SD CC 2a]
 gi|294445193|gb|EFG13867.1| recombination protein RecR [Bacteroides xylanisolvens SD CC 1b]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 17  FSKLPGIGRKTAMRLVLHL 35


>gi|260170498|ref|ZP_05756910.1| recombination protein RecR [Bacteroides sp. D2]
 gi|315918842|ref|ZP_07915082.1| recombination protein recR [Bacteroides sp. D2]
 gi|313692717|gb|EFS29552.1| recombination protein recR [Bacteroides sp. D2]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 17  FSKLPGIGRKTAMRLVLHL 35


>gi|237720984|ref|ZP_04551465.1| recombination protein recR [Bacteroides sp. 2_2_4]
 gi|229449819|gb|EEO55610.1| recombination protein recR [Bacteroides sp. 2_2_4]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 17  FSKLPGIGRKTAMRLVLHL 35


>gi|255691811|ref|ZP_05415486.1| recombination protein RecR [Bacteroides finegoldii DSM 17565]
 gi|260622529|gb|EEX45400.1| recombination protein RecR [Bacteroides finegoldii DSM 17565]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 17  FSKLPGIGRKTAMRLVLHL 35


>gi|169237523|ref|YP_001690727.1| hypothetical protein OE5289R [Halobacterium salinarum R1]
 gi|167728750|emb|CAP15609.1| hypothetical protein OE5289R [Halobacterium salinarum R1]
          Length = 478

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 14/85 (16%)

Query: 75  LQSVQGVGARVA--MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
           L++V GVG R A  +      +  +L ++        IAQ+ GI  K A R + E     
Sbjct: 199 LETVTGVGHRRAELLNNAEIRSRADLAQA----EVYEIAQLDGIGKKTA-RTIVE----- 248

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMP 157
              + VV+Q  + V  +++     P
Sbjct: 249 --SAEVVEQREARVAPDESLPSREP 271


>gi|29346491|ref|NP_809994.1| recombination protein RecR [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568105|ref|ZP_04845516.1| recombination protein recR [Bacteroides sp. 1_1_6]
 gi|298387732|ref|ZP_06997283.1| recombination protein RecR [Bacteroides sp. 1_1_14]
 gi|73621464|sp|Q8A8T6|RECR_BACTN RecName: Full=Recombination protein recR
 gi|29338387|gb|AAO76188.1| recombination protein recR [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842178|gb|EES70258.1| recombination protein recR [Bacteroides sp. 1_1_6]
 gi|298259588|gb|EFI02461.1| recombination protein RecR [Bacteroides sp. 1_1_14]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 17  FSKLPGIGRKTAMRLVLHL 35


>gi|91790880|ref|YP_551831.1| ERCC4 [Polaromonas sp. JS666]
 gi|91700760|gb|ABE46933.1| ERCC4 [Polaromonas sp. JS666]
          Length = 217

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            G G   A  +L    + E V +        +  + GI  K A +I
Sbjct: 164 PGCGPGTAKKLLGHFGSAERVFAAS---VDELCAVKGIGRKTADQI 206


>gi|332882336|ref|ZP_08449964.1| recombination protein RecR [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679720|gb|EGJ52689.1| recombination protein RecR [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PGI  K A R++  L
Sbjct: 14  VNEFAKLPGIGSKTAMRLVLHL 35


>gi|330996287|ref|ZP_08320172.1| recombination protein RecR [Paraprevotella xylaniphila YIT 11841]
 gi|329573479|gb|EGG55086.1| recombination protein RecR [Paraprevotella xylaniphila YIT 11841]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PGI  K A R++  L
Sbjct: 14  VNEFAKLPGIGSKTAMRLVLHL 35


>gi|322373724|ref|ZP_08048260.1| helicase, RecD/TraA family [Streptococcus sp. C150]
 gi|321278766|gb|EFX55835.1| helicase, RecD/TraA family [Streptococcus sp. C150]
          Length = 834

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK-----GKAISLSSVVQQ--DM 143
           S+ +A+ L++     N        GI  K A RI+ +L       K +   S ++Q  ++
Sbjct: 80  SKPSASGLIKYFSSDN------FKGIGKKTAERIV-DLYGEDPIDKILKDPSKLEQIPNL 132

Query: 144 SCVNKEQ-AHICSMPSFAINAISALVNLGYGQDQATT 179
           S VN+E       +       +S L + G     A+ 
Sbjct: 133 SKVNREAFVAKLKINYGTEQILSKLSSYGLTPKAASQ 169


>gi|298484196|ref|ZP_07002361.1| recombination protein RecR [Bacteroides sp. D22]
 gi|299145431|ref|ZP_07038499.1| recombination protein RecR [Bacteroides sp. 3_1_23]
 gi|298269609|gb|EFI11205.1| recombination protein RecR [Bacteroides sp. D22]
 gi|298515922|gb|EFI39803.1| recombination protein RecR [Bacteroides sp. 3_1_23]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 17  FSKLPGIGRKTAMRLVLHL 35


>gi|237716337|ref|ZP_04546818.1| recombination protein recR [Bacteroides sp. D1]
 gi|229443984|gb|EEO49775.1| recombination protein recR [Bacteroides sp. D1]
          Length = 220

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 32  FSKLPGIGRKTAMRLVLHL 50


>gi|220918862|ref|YP_002494166.1| recombination protein RecR [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956716|gb|ACL67100.1| recombination protein RecR [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 198

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            K +A++PGI  K A R+
Sbjct: 11  VKELARLPGIGEKTAQRL 28


>gi|197124083|ref|YP_002136034.1| recombination protein RecR [Anaeromyxobacter sp. K]
 gi|196173932|gb|ACG74905.1| recombination protein RecR [Anaeromyxobacter sp. K]
          Length = 198

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            K +A++PGI  K A R+
Sbjct: 11  VKELARLPGIGEKTAQRL 28


>gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT]
 gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT]
          Length = 664

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 63/213 (29%), Gaps = 55/213 (25%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL----------------Q 76
            TLSC  ++       V    R+  + + GF      Q F  L                 
Sbjct: 425 NTLSCKPQL---VKSIVHFGSRE-AMNIAGFSEKTAEQLFEELEIKSISDLYRIKKEDLL 480

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVI------AQIPGISMKIASRIMTELKG 130
            +   G + A           L+++I       +        IP +  K +    T+L  
Sbjct: 481 KLNRFGEKKA---------QNLIDAIESSKECDLPSFIYALGIPNVGKKTS----TDLCK 527

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---------AISALVNLGYGQDQATTAV 181
           K  +L ++ +     +   +     +    ++         +I  L++LG         +
Sbjct: 528 KFKTLDNLKKAKFEELVSVEDIGDIVAQSVLDFFNDETILKSIDELLSLGVTPKFKEEEI 587

Query: 182 VSVLKKEKNIADDSQI-------IRLALRAISC 207
              +   K +     +       I+  L+++  
Sbjct: 588 KENIFNGKTVVVTGSLSSFSRNEIKEKLQSLGA 620


>gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242]
 gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242]
          Length = 769

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTELKGK 131
           + S+  +G   A  +L        VE+++      + ++  I  K A ++  +   K K
Sbjct: 713 VSSISNIGPNAAKNLLDHFGT---VENVMKAELDELKEVKNIGPKTAGKMREILSSKYK 768


>gi|15805234|ref|NP_293922.1| recombination protein RecR [Deinococcus radiodurans R1]
 gi|7388065|sp|Q9ZNA2|RECR_DEIRA RecName: Full=Recombination protein recR
 gi|151568115|pdb|2V1C|A Chain A, Crystal Structure And Mutational Study Of Recor Provide
           Insight Into Its Role In Dna Repair
 gi|151568116|pdb|2V1C|B Chain B, Crystal Structure And Mutational Study Of Recor Provide
           Insight Into Its Role In Dna Repair
 gi|6457868|gb|AAF09785.1|AE001882_3 recR protein [Deinococcus radiodurans R1]
          Length = 220

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
              LV  I       ++++PGI  K A R+   L
Sbjct: 4   PPSLVSLIRE-----LSRLPGIGPKSAQRLAFHL 32


>gi|194336096|ref|YP_002017890.1| helicase, RecD/TraA family [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308573|gb|ACF43273.1| helicase, RecD/TraA family [Pelodictyon phaeoclathratiforme BU-1]
          Length = 738

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           V+GVG R+A  ++        V ++I  + + +  +PG+  K   +I+
Sbjct: 100 VKGVGHRLAKVLVRTYGME--VFTVIEDHPEQLLGLPGVGKKKLQQIV 145


>gi|325263748|ref|ZP_08130481.1| radical SAM domain protein [Clostridium sp. D5]
 gi|324030786|gb|EGB92068.1| radical SAM domain protein [Clostridium sp. D5]
          Length = 443

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 24/129 (18%)

Query: 24  VCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIRL--FGFLSDL---DRQW-FMLLQ 76
           V Y  +  +   S L  + G+   L  E  + Q    L  + F +     ++   F +  
Sbjct: 258 VFYSAFVSVNEDSALPARTGEGPPLLREHRLYQADWLLRYYQFEAAELLDEKNPNFNIFL 317

Query: 77  SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
                  +   A+  L           +   +  ++ ++PGI +K A+RI+     KA  
Sbjct: 318 D-----PKCDWALKHLEYFPVE-----VNRADYSMLLRVPGIGVKSATRIV-----KARR 362

Query: 135 LSSVVQQDM 143
           + ++  +D+
Sbjct: 363 MGTLQFEDL 371


>gi|299144508|ref|ZP_07037587.1| recombination protein RecR [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298517596|gb|EFI41336.1| recombination protein RecR [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 199

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 107 SKVIAQIPGISMKIASRI---MTELK-GKAISLSSVVQQDMSCV 146
              + ++PG+  K A R+   + ++   K  +LS  +      V
Sbjct: 12  INQLNKLPGVGNKTAQRLAYHIIDMDFEKVKALSDAITSAKENV 55


>gi|164686924|ref|ZP_02210952.1| hypothetical protein CLOBAR_00524 [Clostridium bartlettii DSM
           16795]
 gi|164604027|gb|EDQ97492.1| hypothetical protein CLOBAR_00524 [Clostridium bartlettii DSM
           16795]
          Length = 199

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
            +  +++PGI  K A R+
Sbjct: 12  IEEFSKLPGIGKKTAQRL 29


>gi|258611456|ref|ZP_05232459.2| comE operon protein 1 [Listeria monocytogenes FSL N3-165]
 gi|258600152|gb|EEW13477.1| comE operon protein 1 [Listeria monocytogenes FSL N3-165]
          Length = 203

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 152 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 196


>gi|153806693|ref|ZP_01959361.1| hypothetical protein BACCAC_00964 [Bacteroides caccae ATCC 43185]
 gi|149131370|gb|EDM22576.1| hypothetical protein BACCAC_00964 [Bacteroides caccae ATCC 43185]
          Length = 205

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 17  FSKLPGIGRKTAMRLVLHL 35


>gi|86160053|ref|YP_466838.1| recombination protein RecR [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496736|sp|Q2IFP4|RECR_ANADE RecName: Full=Recombination protein recR
 gi|85776564|gb|ABC83401.1| recombination protein RecR [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 198

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            K +A++PGI  K A R+
Sbjct: 11  VKELAKLPGIGEKTAQRL 28


>gi|15827213|ref|NP_301476.1| excinuclease ABC subunit C [Mycobacterium leprae TN]
 gi|221229691|ref|YP_002503107.1| excinuclease ABC subunit C [Mycobacterium leprae Br4923]
 gi|21264123|sp|Q9CCP1|UVRC_MYCLE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764939|sp|B8ZUN5|UVRC_MYCLB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|13092761|emb|CAC30070.1| putative excinuclease ABC subunit C [Mycobacterium leprae]
 gi|219932798|emb|CAR70655.1| putative excinuclease ABC subunit C [Mycobacterium leprae Br4923]
          Length = 647

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 22/117 (18%)

Query: 18  LIDVQGVCY-----IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL------SD 66
           +IDV  +        ++ P      +        LF+   +R +  R   F         
Sbjct: 524 IIDVAVIGLAKRLEEVWVPFEPYPVIMPRNSEA-LFLLQRVRDEAHR---FAITYHRSKR 579

Query: 67  LDRQWFMLLQSVQGVGA--RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
             R     L SV G+GA  R A+ V    +   L ++ + Q    I  +PGI +  A
Sbjct: 580 SKRMTASALDSVPGLGAHRRKAL-VTHFGSIARLKDATVEQ----ITAVPGIGVATA 631


>gi|55378369|ref|YP_136219.1| 50S ribosomal protein L32e [Haloarcula marismortui ATCC 43049]
 gi|132885|sp|P12736|RL32_HALMA RecName: Full=50S ribosomal protein L32e; AltName: Full=Hl5
 gi|50513494|pdb|1S72|Y Chain Y, Refined Crystal Structure Of The Haloarcula Marismortui
           Large Ribosomal Subunit At 2.4 Angstrom Resolution
 gi|66360808|pdb|1YHQ|Y Chain Y, Crystal Structure Of Azithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360841|pdb|1YI2|Y Chain Y, Crystal Structure Of Erythromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360874|pdb|1YIJ|Y Chain Y, Crystal Structure Of Telithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360907|pdb|1YIT|Y Chain Y, Crystal Structure Of Virginiamycin M And S Bound To The
           50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360940|pdb|1YJ9|Y Chain Y, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
           Haloarcula Marismortui Containing A Three Residue
           Deletion In L22
 gi|66360973|pdb|1YJN|Y Chain Y, Crystal Structure Of Clindamycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66361006|pdb|1YJW|Y Chain Y, Crystal Structure Of Quinupristin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753149|pdb|1VQ4|Y Chain Y, The Structure Of The Transition State Analogue "daa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753181|pdb|1VQ5|Y Chain Y, The Structure Of The Transition State Analogue "raa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753213|pdb|1VQ6|Y Chain Y, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753245|pdb|1VQ7|Y Chain Y, The Structure Of The Transition State Analogue "dca" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753276|pdb|1VQ8|Y Chain Y, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 gi|83753308|pdb|1VQ9|Y Chain Y, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 gi|83753339|pdb|1VQK|Y Chain Y, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
           The Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753370|pdb|1VQL|Y Chain Y, The Structure Of The Transition State Analogue "dcsn"
           Bound To The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|83753401|pdb|1VQM|Y Chain Y, The Structure Of The Transition State Analogue "dan" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753433|pdb|1VQN|Y Chain Y, The Structure Of Cc-Hpmn And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753464|pdb|1VQO|Y Chain Y, The Structure Of Ccpmn Bound To The Large Ribosomal
           Subunit Haloarcula Marismortui
 gi|83753496|pdb|1VQP|Y Chain Y, The Structure Of The Transition State Analogue "rap" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|145580196|pdb|2OTJ|Y Chain Y, 13-Deoxytedanolide Bound To The Large Subunit Of
           Haloarcula Marismortui
 gi|145580227|pdb|2OTL|Y Chain Y, Girodazole Bound To The Large Subunit Of Haloarcula
           Marismortui
 gi|171848861|pdb|2QA4|Y Chain Y, A More Complete Structure Of The The L7L12 STALK OF THE
           Haloarcula Marismortui 50s Large Ribosomal Subunit
 gi|188596026|pdb|3CC2|Y Chain Y, The Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution With Rrna Sequence For The 23s Rrna And
           Genome-Derived Sequences For R-Proteins
 gi|188596057|pdb|3CC4|Y Chain Y, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 gi|188596088|pdb|3CC7|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2487u
 gi|188596119|pdb|3CCE|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535a
 gi|188596150|pdb|3CCJ|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2534u
 gi|188596181|pdb|3CCL|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535c. Density For Anisomycin Is
           Visible But Not Included In Model.
 gi|188596212|pdb|3CCM|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2611u
 gi|188596243|pdb|3CCQ|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488u
 gi|188596274|pdb|3CCR|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488c. Density For Anisomycin Is
           Visible But Not Included In The Model.
 gi|188596305|pdb|3CCS|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482a
 gi|188596336|pdb|3CCU|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482c
 gi|188596367|pdb|3CCV|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2616a
 gi|188596398|pdb|3CD6|Y Chain Y, Co-Cystal Of Large Ribosomal Subunit Mutant G2616a With
           Cc- Puromycin
 gi|194368728|pdb|3CPW|X Chain X, The Structure Of The Antibiotic Linezolid Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|208435518|pdb|2QEX|Y Chain Y, Negamycin Binds To The Wall Of The Nascent Chain Exit
           Tunnel Of The 50s Ribosomal Subunit
 gi|290790060|pdb|3I55|Y Chain Y, Co-Crystal Structure Of Mycalamide A Bound To The Large
           Ribosomal Subunit
 gi|290790091|pdb|3I56|Y Chain Y, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
           Large Ribosomal Subunit
 gi|48865|emb|CAA41288.1| ribosomal protein [Haloarcula marismortui]
 gi|55231094|gb|AAV46513.1| 50S ribosomal protein L32E [Haloarcula marismortui ATCC 43049]
 gi|228188|prf||1718307E ribosomal protein HL5
          Length = 241

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 72  FMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  L  + GVG   A  +      +  ++  +    +   +A + GI   +A+RI
Sbjct: 14  YTELTDISGVGPSKAESLREAGFESVEDVRGA----DQSALADVSGIGNALAARI 64


>gi|47095437|ref|ZP_00233047.1| comE operon protein 1 [Listeria monocytogenes str. 1/2a F6854]
 gi|258612162|ref|ZP_05268183.2| comE operon protein 1 [Listeria monocytogenes F6900]
 gi|293596550|ref|ZP_05262170.2| comE operon protein 1 [Listeria monocytogenes J2818]
 gi|47016258|gb|EAL07181.1| comE operon protein 1 [Listeria monocytogenes str. 1/2a F6854]
 gi|258609079|gb|EEW21687.1| comE operon protein 1 [Listeria monocytogenes F6900]
 gi|293590130|gb|EFF98464.1| comE operon protein 1 [Listeria monocytogenes J2818]
          Length = 211

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 160 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 204


>gi|297526558|ref|YP_003668582.1| glycerophosphoryl diester phosphodiesterase [Staphylothermus
           hellenicus DSM 12710]
 gi|297255474|gb|ADI31683.1| glycerophosphoryl diester phosphodiesterase [Staphylothermus
           hellenicus DSM 12710]
          Length = 231

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 21/98 (21%)

Query: 24  VCY---IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           + Y    +   +       K+ +   L+   +     ++L GF    +      L +V+ 
Sbjct: 145 IGYNIGSVEAAMNAF----KLHEKLKLY-SINPPIQGLQLLGFEKFRE-----YLVNVRR 194

Query: 81  VGARVAM------GVLSRITATELVESIILQNSKVIAQ 112
           VGA+  +      G+L  +   ELV+++I  N + + +
Sbjct: 195 VGAKTVLWTVDDPGLLKGL--EELVDAVITNNVEALIK 230


>gi|294812739|ref|ZP_06771382.1| Exodeoxyribonuclease V [Streptomyces clavuligerus ATCC 27064]
 gi|326441110|ref|ZP_08215844.1| putative exodeoxyribonuclease V [Streptomyces clavuligerus ATCC
           27064]
 gi|294325338|gb|EFG06981.1| Exodeoxyribonuclease V [Streptomyces clavuligerus ATCC 27064]
          Length = 735

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G R+A  ++       L   +I +  K + ++PG+  K
Sbjct: 94  IKGIGPRIAERIVDHFGVDTLD--VIEREPKRLIEVPGLGPK 133


>gi|225020186|ref|ZP_03709378.1| hypothetical protein CORMATOL_00188 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680112|ref|ZP_07402922.1| recombination protein RecR [Corynebacterium matruchotii ATCC 14266]
 gi|224946930|gb|EEG28139.1| hypothetical protein CORMATOL_00188 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660732|gb|EFM50229.1| recombination protein RecR [Corynebacterium matruchotii ATCC 14266]
          Length = 218

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
           ++++PG+  K A RI   L
Sbjct: 13  LSRLPGVGPKSAQRIAFHL 31


>gi|254166800|ref|ZP_04873654.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|289596077|ref|YP_003482773.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|197624410|gb|EDY36971.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|289533864|gb|ADD08211.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
          Length = 221

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           SD + + +  L S+  +G ++A  +L    +   +E I   N   + ++ GI  K A +I
Sbjct: 161 SDEEWKIY-ALSSLPYIGEKIAKALLEHFGS---IEKIARANIVELKKVEGIGDKKARQI 216


>gi|119367679|sp|Q3SPL2|UVRC_NITWN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 689

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81
           ++ P R    L +  D    F+   +R +  R   F+    R+          LQ V G+
Sbjct: 586 LFLPDRPAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRRKDIREAGLQEVPGI 640

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           G      +L       L E I   +   + ++PGIS + A RI
Sbjct: 641 GPARKRALLHHFGT--LKE-IERASLADLGKVPGISAESARRI 680


>gi|90415789|ref|ZP_01223722.1| endonuclease III [marine gamma proteobacterium HTCC2207]
 gi|90332163|gb|EAS47360.1| endonuclease III [marine gamma proteobacterium HTCC2207]
          Length = 217

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 80  GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           G+  +   A+ VLS++   +  + ++  + K +  +PG+  K A
Sbjct: 81  GLAPQKSSAISVLSKMLVEQ-YDGVVPDDWKALESLPGVGHKTA 123


>gi|15825966|pdb|1JJ2|X Chain X, Fully Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution
 gi|20151011|pdb|1KQS|X Chain X, The Haloarcula Marismortui 50s Complexed With A
           Pretranslocational Intermediate In Protein Synthesis
 gi|22218945|pdb|1K8A|Z Chain Z, Co-Crystal Structure Of Carbomycin A Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|22218979|pdb|1K9M|Z Chain Z, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
           Subunit Of Haloarcula Marismortui
 gi|22219022|pdb|1KD1|Z Chain Z, Co-Crystal Structure Of Spiramycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|22219349|pdb|1M1K|Z Chain Z, Co-Crystal Structure Of Azithromycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|24159044|pdb|1M90|Z Chain Z, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
           Sparsomycin Bound To The 50s Ribosomal Subunit
 gi|34811141|pdb|1K73|Z Chain Z, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 gi|34811171|pdb|1KC8|Z Chain Z, Co-Crystal Structure Of Blasticidin S Bound To The 50s
           Ribosomal Subunit
 gi|34811210|pdb|1N8R|Z Chain Z, Structure Of Large Ribosomal Subunit In Complex With
           Virginiamycin M
 gi|34811240|pdb|1NJI|Z Chain Z, Structure Of Chloramphenicol Bound To The 50s Ribosomal
           Subunit
 gi|37927924|pdb|1Q7Y|Z Chain Z, Crystal Structure Of Ccdap-Puromycin Bound At The Peptidyl
           Transferase Center Of The 50s Ribosomal Subunit
 gi|37927959|pdb|1Q81|Z Chain Z, Crystal Structure Of Minihelix With 3' Puromycin Bound To
           A- Site Of The 50s Ribosomal Subunit.
 gi|37927995|pdb|1Q82|Z Chain Z, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
           The 50s Ribosomal Subunit
 gi|37928031|pdb|1Q86|Z Chain Z, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
           Simultaneously At Half Occupancy To Both The A-Site And
           P- Site Of The The 50s Ribosomal Subunit.
 gi|39654696|pdb|1QVF|X Chain X, Structure Of A Deacylated Trna Minihelix Bound To The E
           Site Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|39654729|pdb|1QVG|X Chain X, Structure Of Cca Oligonucleotide Bound To The Trna Binding
           Sites Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|55670559|pdb|1W2B|X Chain X, Trigger Factor Ribosome Binding Domain In Complex With 50s
 gi|228311935|pdb|3CXC|X Chain X, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
           To The 50s Ribosomal Subunit Of H. Marismortui
          Length = 240

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 72  FMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124
           +  L  + GVG   A  +      +  ++  +    +   +A + GI   +A+RI
Sbjct: 13  YTELTDISGVGPSKAESLREAGFESVEDVRGA----DQSALADVSGIGNALAARI 63


>gi|305663906|ref|YP_003860194.1| ERCC4 domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378475|gb|ADM28314.1| ERCC4 domain protein [Ignisphaera aggregans DSM 17230]
          Length = 239

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
            +  + Q ++ LQ    +G ++A+ +L  + +      + + +    + +I G+  K AS
Sbjct: 149 STVEEWQIYI-LQCFPNIGPKIALRILEELGSIHRFCNASLSE----LMRIEGLGEKKAS 203

Query: 123 ---RIMTEL-KGKAISLSSVVQQDMSCVNKEQAH 152
              +I+  L K +    +S    D      E A+
Sbjct: 204 EIYQIIHALYKDRKEKSTSKTIVDYMKNENEDAN 237


>gi|254390680|ref|ZP_05005893.1| exodeoxyribonuclease V [Streptomyces clavuligerus ATCC 27064]
 gi|197704380|gb|EDY50192.1| exodeoxyribonuclease V [Streptomyces clavuligerus ATCC 27064]
          Length = 745

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G R+A  ++       L   +I +  K + ++PG+  K
Sbjct: 104 IKGIGPRIAERIVDHFGVDTLD--VIEREPKRLIEVPGLGPK 143


>gi|218294871|ref|ZP_03495725.1| recombination protein RecR [Thermus aquaticus Y51MC23]
 gi|218244779|gb|EED11303.1| recombination protein RecR [Thermus aquaticus Y51MC23]
          Length = 194

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 10/42 (23%)

Query: 107 SKVIAQIPGISMKIASRIMT----------ELKGKAISLSSV 138
           ++ ++++PGI  K A ++            ELK    +L  +
Sbjct: 11  ARALSRLPGIGPKTAQKLALFLAFHKEVAEELKEGLAALRDL 52


>gi|209543162|ref|YP_002275391.1| helicase, RecD/TraA family [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530839|gb|ACI50776.1| helicase, RecD/TraA family [Gluconacetobacter diazotrophicus PAl 5]
          Length = 728

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           ++G+G   A  ++      E V  +I Q    + ++ GI  K A RI+
Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERIV 145


>gi|330979500|gb|EGH78103.1| radical SAM family protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 406

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L    G     +  ++A  + +R +   +L ++    +  +IA++P
Sbjct: 286 YGF-TASE------LLDGPGDLALDIDPKLAWALGNRQVFPLDLNQA----DPALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|330943879|gb|EGH46116.1| radical SAM family protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 127

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L    G     +  ++A  + +R +   +L ++    +  +IA++P
Sbjct: 7   YGF-TASE------LLDGPGDLALDIDPKLAWALGNRQVFPLDLNQA----DPALIARVP 55

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 56  GIGIRTTQRLV-ELR 69


>gi|330901031|gb|EGH32450.1| radical SAM family protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 406

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L    G     +  ++A  + +R +   +L ++    +  +IA++P
Sbjct: 286 YGF-TASE------LLDGPGDLALDIDPKLAWALGNRQVFPLDLNQA----DPALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|315637400|ref|ZP_07892613.1| exodeoxyribonuclease V alpha subunit [Arcobacter butzleri JV22]
 gi|315478292|gb|EFU69012.1| exodeoxyribonuclease V alpha subunit [Arcobacter butzleri JV22]
          Length = 565

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 61  FG----FLSDL--DRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           +G    F +    + + F  L   V+GVG + A  +L + +  EL+E I+      +   
Sbjct: 66  YGVQFEFDTLELKEAEMFFFLTKIVKGVGKKFASELLEKYSENELIE-ILNDRPNELLNF 124

Query: 114 PGISMKIASRIM 125
            GI  K    I+
Sbjct: 125 KGIKDKKLETIV 136


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 23/125 (18%)

Query: 62  GF---LSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVE------------SIILQ 105
           GF   ++  DR  F L+  +V  +  +  +  L RI   E+              + +  
Sbjct: 158 GFQVLITTGDRDAFQLVTENVTVLYPKRGVSDLGRIDPAEVDNRYGLTPEQYPDFAALRG 217

Query: 106 NSK-VIAQIPGISMKIASRIM------TELKGKAISLSSVVQQDMSCVNKEQAHICSMPS 158
           +    +  IPG+  K A++ +       EL  +   +       +            +  
Sbjct: 218 DPSDNLPSIPGVGEKTAAKWVREFGSLAELTDRVDEVKGKAGDALRANLANVLLNRQLTE 277

Query: 159 FAINA 163
              + 
Sbjct: 278 LVRDV 282


>gi|320354018|ref|YP_004195357.1| recombination protein RecR [Desulfobulbus propionicus DSM 2032]
 gi|320122520|gb|ADW18066.1| recombination protein RecR [Desulfobulbus propionicus DSM 2032]
          Length = 203

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMT 126
              L   I       + ++PGI  K A+R+  
Sbjct: 5   PPALERLIAD-----LTRLPGIGRKTATRLAL 31


>gi|294012246|ref|YP_003545706.1| excinuclease ABC subunit C [Sphingobium japonicum UT26S]
 gi|292675576|dbj|BAI97094.1| excinuclease ABC subunit C [Sphingobium japonicum UT26S]
          Length = 637

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  V G+G      +L      + V+S  L++   + + PG+S  +A ++
Sbjct: 585 LDEVPGIGPSRKKALLMHFGTAKAVKSAALED---LLKAPGVSKAVAQQV 631


>gi|213615666|ref|ZP_03371492.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 155

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 102 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 154


>gi|170289532|ref|YP_001739770.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga sp. RQ2]
 gi|170177035|gb|ACB10087.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga sp. RQ2]
          Length = 181

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 20/127 (15%)

Query: 73  MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
             L S+ G+G   A  ++  R +             + +  + GI  K   +I      +
Sbjct: 55  EDLMSIPGIGPVKAQRIIDYRESHGGFSS------VEELKNVSGIGEKTLEKI-----SR 103

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
            +++  V Q     V K   +  S+          L  L Y  +    A+V   +K    
Sbjct: 104 YVTVEGVEQHIKREVTKLNVNTASVEE--------LETLPYIGEVKAKAIVEYREKNGPF 155

Query: 192 ADDSQII 198
                ++
Sbjct: 156 RSPEDLL 162


>gi|153006598|ref|YP_001380923.1| recombination protein RecR [Anaeromyxobacter sp. Fw109-5]
 gi|171769313|sp|A7HGU3|RECR_ANADF RecName: Full=Recombination protein recR
 gi|152030171|gb|ABS27939.1| recombination protein RecR [Anaeromyxobacter sp. Fw109-5]
          Length = 198

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            K +A++PGI  K A R+
Sbjct: 11  VKELAKLPGIGEKTAQRL 28


>gi|72162420|ref|YP_290077.1| excinuclease ABC subunit C [Thermobifida fusca YX]
 gi|90111761|sp|Q47NB5|UVRC_THEFY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71916152|gb|AAZ56054.1| Excinuclease ABC subunit C [Thermobifida fusca YX]
          Length = 656

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  + G+G      +L    +   L ++   +    IA++PGI  + A  I
Sbjct: 588 LDDIPGLGPVRRAALLKHFGSVRRLAQATAAE----IAEVPGIGERTAQTI 634


>gi|330836582|ref|YP_004411223.1| RNA binding S1 domain-containing protein [Spirochaeta coccoides
          DSM 17374]
 gi|329748485|gb|AEC01841.1| RNA binding S1 domain protein [Spirochaeta coccoides DSM 17374]
          Length = 571

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 5  IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVET 51
          + G +  +  +YV +D   V Y      P+     + + G+   +F+ T
Sbjct: 37 VTGTVIQVNNEYVFVD---VGYKSEGRIPLDEFDVIPEDGEKVKVFIIT 82


>gi|307544647|ref|YP_003897126.1| recombination protein RecR [Halomonas elongata DSM 2581]
 gi|307216671|emb|CBV41941.1| recombination protein RecR [Halomonas elongata DSM 2581]
          Length = 201

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%)

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167
           +PG+  K A R+   L  +       + + +    ++  +     +     I AL
Sbjct: 17  LPGVGPKTAQRMAMHLLERDREGGQRLAEVLGVALEQVGYCQRCRTLTEETICAL 71


>gi|205374269|ref|ZP_03227068.1| ComE operon protein 1 [Bacillus coahuilensis m4-4]
          Length = 199

 Score = 36.2 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 17/90 (18%)

Query: 40  KIGDFCTLFVETHMRQDQIRLFGFLSDLD-RQWF--------MLLQSVQGVGARVAMGVL 90
           KI D   +++      +    +G     + R+ F          L+++ G+G   A  ++
Sbjct: 107 KIQDEMVIYIPEKGEVEFQ--YGVSQTEEKRELFINLNTATKEELETLPGIGPAKAEAII 164

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKI 120
                  L  SI       I  +PGI  K 
Sbjct: 165 -TYRDETLFSSIEE-----IENVPGIGTKT 188


>gi|329117808|ref|ZP_08246525.1| comEA protein [Streptococcus parauberis NCFD 2020]
 gi|326908213|gb|EGE55127.1| comEA protein [Streptococcus parauberis NCFD 2020]
          Length = 225

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 74  LLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            L  + G+G + A  ++ +R           L++   + +I GI  K   ++
Sbjct: 173 QLTKIPGIGEKRAHEIIEARDKMGGFKS---LED---LTKISGIGKKTLEKM 218


>gi|297561956|ref|YP_003680930.1| excinuclease ABC, C subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846404|gb|ADH68424.1| excinuclease ABC, C subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 675

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 16/90 (17%)

Query: 35  LSCLGKIGDFCTLF-VETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI 93
           L  L ++ D    F ++ H  +    L G  S  +           G+G      ++   
Sbjct: 568 LYLLQRVRDEAHRFAIQYHRHKRAKALTG-SSLDEL---------PGLGPSRRTALIKAF 617

Query: 94  -TATELVESIILQNSKVIAQIPGISMKIAS 122
            +   L  +   +    IA +PGI  K+A 
Sbjct: 618 GSVRRLASATAEE----IAAVPGIGPKLAE 643


>gi|271967572|ref|YP_003341768.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270510747|gb|ACZ89025.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 560

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 6/51 (11%)

Query: 73  MLLQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKI 120
             L  +  +G + A+ +   +   +   L E+I       +  + G   K 
Sbjct: 89  RRLTRIASLGPKKAVFLFQELGIDSPEALAEAIGQG---RLKGLKGFGPKT 136


>gi|225181515|ref|ZP_03734957.1| recombination protein RecR [Dethiobacter alkaliphilus AHT 1]
 gi|225167763|gb|EEG76572.1| recombination protein RecR [Dethiobacter alkaliphilus AHT 1]
          Length = 198

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 107 SKVIAQIPGISMKIASR 123
            + + ++PG+  K A R
Sbjct: 11  IESLQKLPGVGPKTAQR 27


>gi|188997418|ref|YP_001931669.1| hypothetical protein SYO3AOP1_1513 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932485|gb|ACD67115.1| hypothetical protein SYO3AOP1_1513 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 106

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
            L+S+  +  +       + T  +L   I   +   + +IP I  K A  I+   K +
Sbjct: 24  TLKSIN-INPK------PKFTENDLKIDINTADIITLQRIPYIGEKTAELII---KDR 71


>gi|75676710|ref|YP_319131.1| excinuclease ABC subunit C [Nitrobacter winogradskyi Nb-255]
 gi|74421580|gb|ABA05779.1| Excinuclease ABC subunit C [Nitrobacter winogradskyi Nb-255]
          Length = 666

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81
           ++ P R    L +  D    F+   +R +  R   F+    R+          LQ V G+
Sbjct: 563 LFLPDRPAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRRKDIREAGLQEVPGI 617

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           G      +L       L E I   +   + ++PGIS + A RI
Sbjct: 618 GPARKRALLHHFGT--LKE-IERASLADLGKVPGISAESARRI 657


>gi|49259537|pdb|1VDD|A Chain A, Crystal Structure Of Recombinational Repair Protein Recr
 gi|49259538|pdb|1VDD|B Chain B, Crystal Structure Of Recombinational Repair Protein Recr
 gi|49259539|pdb|1VDD|C Chain C, Crystal Structure Of Recombinational Repair Protein Recr
 gi|49259540|pdb|1VDD|D Chain D, Crystal Structure Of Recombinational Repair Protein Recr
          Length = 228

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
              LV  I       ++++PGI  K A R+   L
Sbjct: 4   PPSLVSLIRE-----LSRLPGIGPKSAQRLAFHL 32


>gi|16803524|ref|NP_465009.1| hypothetical protein lmo1484 [Listeria monocytogenes EGD-e]
 gi|16410913|emb|CAC99562.1| comEA [Listeria monocytogenes EGD-e]
          Length = 200

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 149 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 193


>gi|46907712|ref|YP_014101.1| DNA-binding protein ComEA [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094098|ref|ZP_00231823.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858]
 gi|258611690|ref|ZP_05241456.2| comE operon protein [Listeria monocytogenes FSL R2-503]
 gi|293596847|ref|ZP_05264778.2| comE operon protein [Listeria monocytogenes HPB2262]
 gi|300764851|ref|ZP_07074841.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017]
 gi|11991257|gb|AAG42266.1|AF320589_1 competence protein 1 [Listeria monocytogenes]
 gi|46880981|gb|AAT04278.1| DNA-binding protein, ComEA family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017528|gb|EAL08336.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858]
 gi|258605410|gb|EEW18018.1| comE operon protein [Listeria monocytogenes FSL R2-503]
 gi|293582969|gb|EFF95001.1| comE operon protein [Listeria monocytogenes HPB2262]
 gi|300514527|gb|EFK41584.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017]
          Length = 211

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 160 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 204


>gi|331008691|gb|EGH88747.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|330985965|gb|EGH84068.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|330963669|gb|EGH63929.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|330891098|gb|EGH23759.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|330876229|gb|EGH10378.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|320328395|gb|EFW84398.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 403

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 283 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 331

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 332 GIGIRTTQRLV-ELR 345


>gi|319902361|ref|YP_004162089.1| DNA replication and repair protein RecR [Bacteroides helcogenes P
           36-108]
 gi|319417392|gb|ADV44503.1| DNA replication and repair protein RecR [Bacteroides helcogenes P
           36-108]
          Length = 205

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
               A++PG+  K A R++  L
Sbjct: 14  VSEFAKLPGVGRKTAMRLVLHL 35


>gi|313888962|ref|ZP_07822622.1| recombination protein RecR [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845135|gb|EFR32536.1| recombination protein RecR [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 200

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
            K + ++PGI  K A R+
Sbjct: 12  IKRLNRLPGIGSKTAQRL 29


>gi|298487074|ref|ZP_07005125.1| Radical SAM domain protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158427|gb|EFH99496.1| Radical SAM domain protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|289626330|ref|ZP_06459284.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646592|ref|ZP_06477935.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868288|gb|EGH02997.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|269792359|ref|YP_003317263.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099994|gb|ACZ18981.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 653

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 32/118 (27%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLF----VETHMRQDQIRLFGFLSDLD----- 68
           ++++QG  Y     ++ ++ L ++     L+    +E  +    IR  GF    +     
Sbjct: 336 ILELQGEGYA----LKDMAILYRVNALSRLYEQRLIEAGIPYRVIRGLGFYDRKEIKDVL 391

Query: 69  ---------RQW--FMLLQSVQ--GVGAR------VAMGVLSRITATELVESIILQNS 107
                    R    F  + +V   G+GA+        MG L      E   S++  ++
Sbjct: 392 ALMRLAIQPRDLVSFERMVNVPQRGIGAKSTEALWAWMGQLEAQDPGEFWRSVLEGDA 449


>gi|257488019|ref|ZP_05642060.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 131

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 11  YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 59

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 60  GIGIRTTQRLV-ELR 73


>gi|255030876|ref|ZP_05302827.1| hypothetical protein LmonL_20341 [Listeria monocytogenes LO28]
          Length = 199

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 148 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 192


>gi|229823581|ref|ZP_04449650.1| hypothetical protein GCWU000282_00879 [Catonella morbi ATCC 51271]
 gi|229787025|gb|EEP23139.1| hypothetical protein GCWU000282_00879 [Catonella morbi ATCC 51271]
          Length = 198

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRI---MTELK 129
                ++PGI  K A+R+   + ++K
Sbjct: 11  INSFTKLPGIGAKTAARLAFYVLDMK 36


>gi|219990739|gb|ACL68743.1| MIP02859p [Drosophila melanogaster]
          Length = 153

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +  M   ++     L+  +   N K + +IPGI  K AS +  
Sbjct: 78  PKAWMANNTKC----LLGHLNNGNVKQLQEIPGIGSKTASILAL 117


>gi|213969947|ref|ZP_03398080.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301382220|ref|ZP_07230638.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061323|ref|ZP_07252864.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302134262|ref|ZP_07260252.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925272|gb|EEB58834.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1]
 gi|331014467|gb|EGH94523.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|170078351|ref|YP_001734989.1| recombination protein [Synechococcus sp. PCC 7002]
 gi|169886020|gb|ACA99733.1| recombination protein [Synechococcus sp. PCC 7002]
          Length = 189

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            +   ++PGI  K A R+  
Sbjct: 2   IEQFQRLPGIGPKTAQRLAL 21


>gi|71733960|ref|YP_274696.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554513|gb|AAZ33724.1| radical SAM domain protein [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 61  FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114
           +GF +  +      L S  G     +  ++A  + +R +   +L ++    ++ +IA++P
Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334

Query: 115 GISMKIASRIMTELK 129
           GI ++   R++ EL+
Sbjct: 335 GIGIRTTQRLV-ELR 348


>gi|114567594|ref|YP_754748.1| exodeoxyribonuclease V [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338529|gb|ABI69377.1| Exodeoxyribonuclease V [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 732

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++G+G  +A  ++ R     L   II      + ++ GI  K    I
Sbjct: 90  IKGIGPVMAKRIVQRFGVEALD--IIENQPDRLQEVNGIGPKRVEMI 134


>gi|162146783|ref|YP_001601244.1| exodeoxyribonuclease V alpha chain [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785360|emb|CAP54908.1| putative exodeoxyribonuclease V alpha chain [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 728

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           ++G+G   A  ++      E V  +I Q    + ++ GI  K A RI+
Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERIV 145



 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMKIASRI 124
           R+  + L S  GVG   A+ +        +   +I +N   +A+ I GI  K A +I
Sbjct: 155 REIMLFLHS-NGVGTSRAVRIFKTYGQDAVR--LISENPYRLAKDIRGIGFKTADQI 208


>gi|76801124|ref|YP_326132.1| carboxypeptidase [Natronomonas pharaonis DSM 2160]
 gi|76556989|emb|CAI48563.1| predicted carboxypeptidase [Natronomonas pharaonis DSM 2160]
          Length = 506

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 120 IASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            A R++ EL+   + L  ++   D      E             A  AL  LGY 
Sbjct: 179 TAERVLEELRDGLVPLIDAIGASDTELYALEGTFPEDDQFAVTEA--ALETLGYD 231


>gi|324993816|gb|EGC25735.1| endopeptidase O [Streptococcus sanguinis SK405]
 gi|324994863|gb|EGC26776.1| endopeptidase O [Streptococcus sanguinis SK678]
          Length = 689

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
            AL  LGY + ++   V   L+ +  +A  +Q
Sbjct: 226 EALKKLGYSEKESEKIVKEALEFDGELAKYAQ 257


>gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1]
          Length = 724

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 562 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 609

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 610 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 667


>gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1]
 gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2]
 gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|312897986|ref|ZP_07757395.1| helicase, RecD/TraA family [Megasphaera micronuciformis F0359]
 gi|310620911|gb|EFQ04462.1| helicase, RecD/TraA family [Megasphaera micronuciformis F0359]
          Length = 720

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI---------AS 122
           F+   +V G+G  +A  +++   +  +   I++   + + ++ GI  K          A 
Sbjct: 86  FLASGAVDGIGPALAKRLVNAFGSETMK--IMMNEPERLKEVEGIGPKKLTALTASLQAE 143

Query: 123 RIMTEL 128
           + + EL
Sbjct: 144 KDVNEL 149


>gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
 gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
          Length = 753

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 591 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 638

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 639 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 696


>gi|254478030|ref|ZP_05091414.1| Transposase domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036034|gb|EEB76724.1| Transposase domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 287

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 248 EEDLERLDTIPGVGRRTAEHIIAE 271


>gi|147920405|ref|YP_685820.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon
           RC-I]
 gi|110621216|emb|CAJ36494.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon
           RC-I]
          Length = 574

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 25/152 (16%)

Query: 3   GKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62
             ++G+IE  Y++  L D+ GV   I      +  L + G    L  ET  ++  + L+ 
Sbjct: 39  SSLEGDIEEYYKEGRLRDIPGVGPSI---GSVIEELLRTGRSGLL--ETLKKETPLELY- 92

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMK 119
                       +  V G+G + A+ V   L   T  E  ++        I +I G+  K
Sbjct: 93  -----------EVIEVPGIGRKTALKVHRALGVATIEEFRDAARSH---RIRRIKGLGDK 138

Query: 120 IASRIM--TELKGKAISLSSVVQQDMSCVNKE 149
           +  +I+   +   KA+S + +     S +  E
Sbjct: 139 VEKKILDALDRHNKALSETRIPVFRASAIAAE 170


>gi|15643810|ref|NP_228858.1| comEA protein-related protein [Thermotoga maritima MSB8]
 gi|4981594|gb|AAD36129.1|AE001765_8 comEA protein-related protein [Thermotoga maritima MSB8]
          Length = 181

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 20/127 (15%)

Query: 73  MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
             L S+ G+G   A  ++  R +             + +  + GI  K   +I      +
Sbjct: 55  EDLMSIPGIGPVKAQRIIDYRESHGGFSS------VEELKNVSGIGEKTLEKI-----SR 103

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
            +++  V Q     V K   +  S+          L  L Y  +    A+V   +K    
Sbjct: 104 YVTVEGVEQHIKREVTKLNVNTASVEE--------LETLPYIGEVKAKAIVEYREKNGPF 155

Query: 192 ADDSQII 198
                ++
Sbjct: 156 RSPEDLL 162


>gi|27065203|pdb|1KFT|A Chain A, Solution Structure Of The C-Terminal Domain Of Uvrc From
           E- Coli
          Length = 78

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 75  LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 26  LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 77


>gi|293596227|ref|ZP_05229458.2| comE operon protein [Listeria monocytogenes FSL J1-194]
 gi|293593694|gb|EFG01455.1| comE operon protein [Listeria monocytogenes FSL J1-194]
          Length = 211

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 160 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 204


>gi|224500497|ref|ZP_03668846.1| hypothetical protein LmonF1_12841 [Listeria monocytogenes Finland
           1988]
 gi|224501576|ref|ZP_03669883.1| hypothetical protein LmonFR_03497 [Listeria monocytogenes FSL
           R2-561]
 gi|254829757|ref|ZP_05234412.1| hypothetical protein Lmon1_00310 [Listeria monocytogenes 10403S]
 gi|254898350|ref|ZP_05258274.1| hypothetical protein LmonJ_01005 [Listeria monocytogenes J0161]
 gi|284801871|ref|YP_003413736.1| hypothetical protein LM5578_1626 [Listeria monocytogenes 08-5578]
 gi|284995013|ref|YP_003416781.1| hypothetical protein LM5923_1578 [Listeria monocytogenes 08-5923]
 gi|284057433|gb|ADB68374.1| hypothetical protein LM5578_1626 [Listeria monocytogenes 08-5578]
 gi|284060480|gb|ADB71419.1| hypothetical protein LM5923_1578 [Listeria monocytogenes 08-5923]
          Length = 200

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 149 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 193


>gi|257440779|ref|ZP_05616534.1| helicase, RecD/TraA family [Faecalibacterium prausnitzii A2-165]
 gi|257196753|gb|EEU95037.1| helicase, RecD/TraA family [Faecalibacterium prausnitzii A2-165]
          Length = 737

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           F+   S+  +GAR A  ++ +  A  L   +I  +   +  IPGIS   A RI  E K
Sbjct: 84  FLASGSLPYIGARTANKIIDKFGAAALE--VIANDPAQLTLIPGISADKADRIQQEFK 139


>gi|258513085|ref|YP_003189342.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01]
 gi|256634988|dbj|BAI00963.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01]
 gi|256638043|dbj|BAI04011.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-03]
 gi|256641097|dbj|BAI07058.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-07]
 gi|256644152|dbj|BAI10106.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-22]
 gi|256647207|dbj|BAI13154.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-26]
 gi|256650260|dbj|BAI16200.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-32]
 gi|256653251|dbj|BAI19184.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656304|dbj|BAI22230.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-12]
          Length = 739

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMKIASRI 124
           R+  + L S  GVG   A+ +        +   +I +N   +A+ I GI  K A +I
Sbjct: 156 REIMLFLHS-NGVGTSRAVRIFKTYGQDAVR--LISENPYRLAKDIRGIGFKTADQI 209



 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           ++G+G   A  ++      E V  +I Q    + ++ GI  K A RI+
Sbjct: 101 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPHRLREVTGIGPKRAERIV 146


>gi|15612599|ref|NP_240902.1| recombination protein RecR [Bacillus halodurans C-125]
 gi|20139779|sp|Q9KGM3|RECR_BACHD RecName: Full=Recombination protein recR
 gi|10172648|dbj|BAB03755.1| DNA repair and genetic recombination [Bacillus halodurans C-125]
          Length = 198

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRI---MTELK 129
            +   ++PGI  K ASR+   + E+K
Sbjct: 11  IEGFMRLPGIGPKTASRLAFFVLEMK 36


>gi|309811791|ref|ZP_07705565.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185]
 gi|308434212|gb|EFP58070.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185]
          Length = 667

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           L  + G+G      +L+   +  L   I   ++  + ++ GI   +A  I+  L+
Sbjct: 599 LDGIAGLGPAKQKALLAHFGS--LKR-IRAADADALCEVKGIGPTLAETIVRSLR 650


>gi|302545283|ref|ZP_07297625.1| RecD/TraA family helicase [Streptomyces hygroscopicus ATCC 53653]
 gi|302462901|gb|EFL25994.1| RecD/TraA family helicase [Streptomyces himastatinicus ATCC 53653]
          Length = 760

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G R+A  +        L   +I +  K + ++PG+  K
Sbjct: 119 IKGIGPRIADRITEHFGVDTLD--VIEEQPKRLIEVPGLGPK 158


>gi|322419014|ref|YP_004198237.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320125401|gb|ADW12961.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 396

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 54/227 (23%)

Query: 6   KGNIEGLYEDYVLIDVQGV-----CYIIYCPIRTLSCLGKIGD---FCTLFVETHMRQDQ 57
           +G +  + ++ V++D+ G+      Y ++  +  L  L  I        L        D 
Sbjct: 9   RGRVLIIDDEKVILDLTGIILKNRGYQVFTALSALEGLETIEIERPELVLLDYMMPNMDG 68

Query: 58  IR-------LFG------FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV----- 99
           +        L+       F      +  + L       A  +  +L      +LV     
Sbjct: 69  LTALKEIKRLYPDTYVIMFTGKGSEEIAVELMK-----AGASDYILKPFNNQDLVERIES 123

Query: 100 ----ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS 155
                 I LQN  ++++          R++ E++     L + V +    +++ QA +  
Sbjct: 124 VLKLRGIELQNKALLSER--------ERLLAEIEDWNRELEARVHEKSEALSRAQAEVVQ 175

Query: 156 MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLAL 202
                      L +LGY    +      +     +IA   Q+I+  L
Sbjct: 176 SEK--------LASLGYL---SAGMAHEIRNPLNSIALFVQLIKGGL 211


>gi|255027258|ref|ZP_05299244.1| hypothetical protein LmonocytFSL_14638 [Listeria monocytogenes FSL
           J2-003]
          Length = 200

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 149 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 193


>gi|291531143|emb|CBK96728.1| endonuclease III [Eubacterium siraeum 70/3]
          Length = 212

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131
            + + ++PG+  K A+ I+ +L GK
Sbjct: 109 IEELVKLPGVGRKTANLIVGDLYGK 133


>gi|158522683|ref|YP_001530553.1| RecD/TraA family helicase [Desulfococcus oleovorans Hxd3]
 gi|158511509|gb|ABW68476.1| helicase, RecD/TraA family [Desulfococcus oleovorans Hxd3]
          Length = 736

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           VQGVG  +A  +            +I    + +A++PGI    A  I
Sbjct: 90  VQGVGTAMARKITRHFGKETFS--VIENQPERLAEVPGIGAATALMI 134


>gi|149197730|ref|ZP_01874780.1| RNA binding domain protein, S1 [Lentisphaera araneosa HTCC2155]
 gi|149139300|gb|EDM27703.1| RNA binding domain protein, S1 [Lentisphaera araneosa HTCC2155]
          Length = 705

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            LL  V G+G ++A  +L+  ++  L      +N   + ++P +  K+  +
Sbjct: 488 ELLSYVSGIGPKLAEAILNYRSSEGLF-----KNRNELKKVPRLGDKVFEQ 533


>gi|53757751|gb|AAU92042.1| polyphosphate kinase [Methylococcus capsulatus str. Bath]
          Length = 785

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 65  SDLDRQWFMLLQS-VQGVGARVAMGVLSR---ITATELVESIILQNSKVIAQIPGISMKI 120
           +  +++   L+ S V+G+  +    +L+     +  EL ++    +   + +IPG+S + 
Sbjct: 7   NRTEKEGGRLVISKVKGIS-KSTRIMLAEHGIFSVEELADA----DVGRLTKIPGLSRQK 61

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
           A R++   K     +     +  +     +    S     ++
Sbjct: 62  ALRMVRAAKFMVGDMEKGRDEVSAGTGSAETAEISSADVGLD 103


>gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|226224085|ref|YP_002758192.1| integral membrane protein ComEA [Listeria monocytogenes Clip81459]
 gi|254992214|ref|ZP_05274404.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL
           J2-064]
 gi|255520858|ref|ZP_05388095.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL
           J1-175]
 gi|225876547|emb|CAS05256.1| Putative integral membrane protein ComEA [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465525|gb|EGF36754.1| ComEA family DNA-binding protein [Listeria monocytogenes 1816]
 gi|332311926|gb|EGJ25021.1| DNA-binding protein, ComEA family [Listeria monocytogenes str.
           Scott A]
          Length = 200

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 149 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 193


>gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266]
          Length = 753

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 591 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 638

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 639 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 696


>gi|302390661|ref|YP_003826482.1| DNA replication and repair protein RecR [Thermosediminibacter
           oceani DSM 16646]
 gi|302201289|gb|ADL08859.1| DNA replication and repair protein RecR [Thermosediminibacter
           oceani DSM 16646]
          Length = 198

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + ++++PGI  K A R+
Sbjct: 12  IEELSRLPGIGPKTAQRL 29


>gi|284166895|ref|YP_003405174.1| excinuclease ABC subunit C [Haloterrigena turkmenica DSM 5511]
 gi|284016550|gb|ADB62501.1| excinuclease ABC, C subunit [Haloterrigena turkmenica DSM 5511]
          Length = 597

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 27  IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV----QGVG 82
            +  P RT S      D   L +   +R +  R   F     +     +++V     GVG
Sbjct: 501 RVVTPDRTFSW---PSDAPHLHLLQRVRDEAHR---FAVQYHQTVRDEVKTVLDDVPGVG 554

Query: 83  ARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
                 +L R  +   + E+  + + +    + GI  K A  I
Sbjct: 555 PETRKRLLGRFGSVENVREA-SVDDIE---SVEGIGEKTAETI 593


>gi|224825434|ref|ZP_03698539.1| PHP domain protein [Lutiella nitroferrum 2002]
 gi|224602355|gb|EEG08533.1| PHP  domain protein [Lutiella nitroferrum 2002]
          Length = 573

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L S+ G+G +    +   L+  + + L  +       ++ Q+PG   K+  +++
Sbjct: 96  LLSIPGLGPKRVRTLYHELAITSPSHLQHAAEQG---LVRQLPGFGPKLEQQLL 146


>gi|206890014|ref|YP_002248896.1| recombination protein RecR [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741952|gb|ACI21009.1| recombination protein RecR [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 197

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + + ++PGI  K A R+
Sbjct: 9   IENLCKLPGIGRKTAQRL 26


>gi|330885591|gb|EGH19740.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 138

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 84  TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 131


>gi|163790362|ref|ZP_02184794.1| helicase, putative, RecD/TraA family protein [Carnobacterium sp.
           AT7]
 gi|159874433|gb|EDP68505.1| helicase, putative, RecD/TraA family protein [Carnobacterium sp.
           AT7]
          Length = 834

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 9/60 (15%)

Query: 107 SKVIA--QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
              ++  + PGI  K A  I+ EL      L       +S      A I  +       I
Sbjct: 98  IAYLSSDKFPGIGKKTAETIV-EL------LGDDAIDQISADETVLAKIPGLNDKKKEVI 150


>gi|94496331|ref|ZP_01302908.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58]
 gi|94424077|gb|EAT09101.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58]
          Length = 637

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  V G+G      +L        V    L++   +A+ PG+S  +A ++
Sbjct: 585 LDEVPGIGPARKKALLMHFGTARAVRDAALED---LAKAPGVSKAVAQQV 631


>gi|15673722|ref|NP_267896.1| exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12724760|gb|AAK05838.1|AE006404_5 exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp.
           lactis Il1403]
 gi|326407225|gb|ADZ64296.1| exodeoxyribonuclease V alpha subunit [Lactococcus lactis subsp.
           lactis CV56]
          Length = 834

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 112 QIPGISMKIASRIM 125
           + PGI  K A +I+
Sbjct: 97  KFPGIGKKTAEKIV 110


>gi|77406947|ref|ZP_00783967.1| competence protein CelA [Streptococcus agalactiae H36B]
 gi|77174444|gb|EAO77293.1| competence protein CelA [Streptococcus agalactiae H36B]
          Length = 178

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ++ GVGA+ A  +L    +    ++I       +  + GI  K   ++
Sbjct: 127 LQTISGVGAKRAQDILDYRDSQGGFKTIDD-----LKNVSGIGEKTLEKL 171


>gi|331703165|ref|YP_004399852.1| alpha xylosidase or glucosidase [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328801720|emb|CBW53873.1| Alpha xylosidase or glucosidase [Mycoplasma mycoides subsp. capri
           LC str. 95010]
          Length = 756

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77
            ++I    +T     +IG   T  +   + QD + L+ F ++  ++    + LL      
Sbjct: 224 GFLINTSCKTTF---EIGSPTTDILSFKVDQDYLDLYLFSNNNLKELVSSYTLLTNRISK 280

Query: 78  VQGVGARVAMGVLSRITATELVESI 102
           V  +G  V +  L      EL E+I
Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305


>gi|327468947|gb|EGF14419.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK330]
          Length = 445

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179
           A + + +LK +     ++  +     N              + ++ L  LGY  +  A  
Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPDKASYSGDLLESVVAGLEGLGYEYERTAEE 241

Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207
             V+ + K  K+ A   + IIRLA  L+++  
Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQSLDS 273


>gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|308270886|emb|CBX27496.1| Recombination protein recR [uncultured Desulfobacterium sp.]
          Length = 198

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 107 SKVIAQIPGISMKIASR 123
            K + ++PG+  K A R
Sbjct: 11  IKNLTKLPGVGEKTAER 27


>gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
 gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
          Length = 690

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 23/126 (18%)

Query: 69  RQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           R  + +L   S++ VG   A  + +R  +   V++I   + + +A++ G+   IA+ ++ 
Sbjct: 526 RDLWRVLVALSIRHVGPTAARALATRFGS---VDAIFSADEQTLAEVDGVGPTIAASVI- 581

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL---------GYGQDQA 177
                       V    S + +  A    M          L  L         G+ ++  
Sbjct: 582 --------EWFQVDWHRSILARWAAAGVKMAEEREELPQTLAGLTIVVTGSLEGFTRESV 633

Query: 178 TTAVVS 183
             A+++
Sbjct: 634 QEAIIA 639


>gi|281492331|ref|YP_003354311.1| exodeoxyribonuclease V subunit alpha [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375995|gb|ADA65486.1| Exodeoxyribonuclease V, alpha chain [Lactococcus lactis subsp.
           lactis KF147]
          Length = 834

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 112 QIPGISMKIASRIM 125
           + PGI  K A +I+
Sbjct: 97  KFPGIGKKTAEKIV 110


>gi|256384164|gb|ACU78734.1| glycosyl hydrolase, family 31 [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384996|gb|ACU79565.1| glycosyl hydrolase, family 31 [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455936|gb|ADH22171.1| glycosyl hydrolase, family 31 [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 756

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77
            ++I    +T     +IG   T  +   + QD + L+ F ++  ++    + LL      
Sbjct: 224 GFLINTSCKTTF---EIGSPTTDILSFKVDQDYLDLYLFSNNNLKELVSSYTLLTNRISK 280

Query: 78  VQGVGARVAMGVLSRITATELVESI 102
           V  +G  V +  L      EL E+I
Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305


>gi|206901108|ref|YP_002251308.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12]
 gi|206740211|gb|ACI19269.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12]
          Length = 580

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 70  QWFM--LLQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGISMKIA 121
           + F    L  ++G+G  +   +   +T        EL   I  +    + +IPGI  K+A
Sbjct: 46  KLFKQGKLYQIKGIGESIGQKIKEYLTTGKVTYLEELRREIPPE-ILELLKIPGIGPKLA 104

Query: 122 SRIMTEL 128
            R+ TEL
Sbjct: 105 YRLYTEL 111


>gi|160886051|ref|ZP_02067054.1| hypothetical protein BACOVA_04057 [Bacteroides ovatus ATCC 8483]
 gi|156108864|gb|EDO10609.1| hypothetical protein BACOVA_04057 [Bacteroides ovatus ATCC 8483]
          Length = 241

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A R++  L
Sbjct: 53  FSKLPGIGRKTAMRLVLHL 71


>gi|167038709|ref|YP_001661694.1| recombination protein RecR [Thermoanaerobacter sp. X514]
 gi|256751421|ref|ZP_05492299.1| recombination protein RecR [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913732|ref|ZP_07131049.1| recombination protein RecR [Thermoanaerobacter sp. X561]
 gi|307723252|ref|YP_003903003.1| recombination protein RecR [Thermoanaerobacter sp. X513]
 gi|229470345|sp|B0K101|RECR_THEPX RecName: Full=Recombination protein recR
 gi|166852949|gb|ABY91358.1| recombination protein RecR [Thermoanaerobacter sp. X514]
 gi|256749640|gb|EEU62666.1| recombination protein RecR [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890417|gb|EFK85562.1| recombination protein RecR [Thermoanaerobacter sp. X561]
 gi|307580313|gb|ADN53712.1| recombination protein RecR [Thermoanaerobacter sp. X513]
          Length = 199

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 5/18 (27%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + ++++PG+  K A R+
Sbjct: 12  IEELSKLPGVGPKTAQRL 29


>gi|42560714|ref|NP_975165.1| alpha-xylosidase or alpha-glucosidase [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492210|emb|CAE76807.1| alpha-xylosidase or alpha-glucosidase [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320443|gb|ADK69086.1| glycosyl hydrolase, family 31 [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 756

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77
            ++I    +T     +IG   T  +   + QD + L+ F ++  ++    + LL      
Sbjct: 224 GFLINTSCKTTF---EIGSPTTDILSFKVDQDYLDLYLFSNNNLKELVSSYTLLTNRISK 280

Query: 78  VQGVGARVAMGVLSRITATELVESI 102
           V  +G  V +  L      EL E+I
Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305


>gi|332367345|gb|EGJ45080.1| endopeptidase O [Streptococcus sanguinis SK1059]
          Length = 689

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
            AL  LGY + ++   V   L+ +  +A  +Q
Sbjct: 226 EALKKLGYSEKESEKIVKEALEFDGELAKYAQ 257


>gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1]
 gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|313678923|ref|YP_004056662.1| php domain protein [Oceanithermus profundus DSM 14977]
 gi|313151638|gb|ADR35489.1| PHP domain protein [Oceanithermus profundus DSM 14977]
          Length = 535

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 35/126 (27%)

Query: 74  LLQSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKI----------- 120
            L  VQG+G +   A+      +  ELV +        +   PG   K            
Sbjct: 91  ELFMVQGLGPKRIRALWQAGIDSLEELVRAAEEGRVAAM---PGFGKKTQQALAEAARFA 147

Query: 121 --------------ASRIMT-ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
                         A+R++  +L+  A  + + +   +    +   ++  +   A  A+ 
Sbjct: 148 LANLRRVHLPVGLEAARLLLADLE--AAGIHAALAGSLRRRLETAGNVDLVARAAPEAVL 205

Query: 166 ALVNLG 171
           A   LG
Sbjct: 206 A--ALG 209


>gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3]
 gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|323341650|ref|ZP_08081883.1| DNA topoisomerase TopA [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464075|gb|EFY09268.1| DNA topoisomerase TopA [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 147

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 31/139 (22%)

Query: 3   GKIKGNIEGLYEDYVLIDVQGVCYIIYCPI---------------RTLSCLGKIGDFCT- 46
           G I G +E   +  + ++V    Y +                    +L  +  I  F   
Sbjct: 17  GFI-GRLEYKKKTEITVEVDSKSYHVSVEHDDTIQKILTRVGIQVSSLKEIPDINSFYEG 75

Query: 47  LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS-RITATELVESIILQ 105
             +    R+  I L    +   +     L  ++G+G R A  +L  RI   + +      
Sbjct: 76  QVIHLESRKQCISL---NTSSAQD----LTQIKGIGPRKADAILKYRIEHEKFIS----- 123

Query: 106 NSKVIAQIPGISMKIASRI 124
             + +  I GI  K+  RI
Sbjct: 124 -VEELLNIKGIGPKLLDRI 141


>gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202]
          Length = 772

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 610 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 657

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 658 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 715


>gi|121603731|ref|YP_981060.1| phosphotransferase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120592700|gb|ABM36139.1| PHP C-terminal domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 575

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
            L  V G+G +    +   +    L +  +      +  I G   K   + + E
Sbjct: 95  ELLKVPGLGPKRVRALYHDLGVQTLAQLHLAAQEGRVQAIAGFGPKT-QQALLE 147


>gi|332652776|ref|ZP_08418521.1| radical SAM domain protein [Ruminococcaceae bacterium D16]
 gi|332517922|gb|EGJ47525.1| radical SAM domain protein [Ruminococcaceae bacterium D16]
          Length = 423

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 83  ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            +   A+  L           +   + + + ++PGI +K A RI+
Sbjct: 311 PKCGWALRHLEHFPVE-----VNRADYETLLRVPGIGVKSARRIL 350


>gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1]
 gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1]
 gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2]
 gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2]
 gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1]
 gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1]
 gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1]
 gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2]
 gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1]
 gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2]
 gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1]
 gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1]
 gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4]
 gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3]
 gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1]
 gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1]
 gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2]
 gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1]
 gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1]
 gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1]
 gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1]
 gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2]
 gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1]
 gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2]
 gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3]
 gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2]
 gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1]
 gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3]
 gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1]
 gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1]
 gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2]
 gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1]
 gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2]
 gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2]
 gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3]
 gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1]
 gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2]
 gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1]
 gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2]
 gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1]
 gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3]
 gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2]
 gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1]
 gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1]
 gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2]
 gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
 gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
          Length = 696

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK-----IASRI 124
           + F  L  V+G G  ++  +     + +   +I   +++ I  + GI  K     +A   
Sbjct: 517 RVFCAL-GVRGTGRSMSRRIARHFGSMD---AIRAADAEAIEAVEGIGPKKAPGVVAE-- 570

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
           + EL      L               A   +       A
Sbjct: 571 LVELADLIDKLVKAGVTMTEPGWTPPAEPGADAQADPEA 609


>gi|167579766|ref|ZP_02372640.1| TPR domain protein [Burkholderia thailandensis TXDOH]
          Length = 573

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 77  PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPDSQRAAQVDAALLVLGGKPAEA 130

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 131 QPMLAQELARATGDNRGQAII--ALQAL 156


>gi|11499994|ref|NP_071240.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
 gi|2650671|gb|AAB91244.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 208

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +L ++ G+G + A  +L    +   ++ I   +   + ++ GI  K A  I
Sbjct: 156 MLTAIPGIGEKKAEKLLDYFGS---IQRIANASIAELKRVDGIGEKKAREI 203


>gi|27469223|ref|NP_765860.1| recombination protein RecR [Staphylococcus epidermidis ATCC 12228]
 gi|57866112|ref|YP_187712.1| recombination protein RecR [Staphylococcus epidermidis RP62A]
 gi|242243367|ref|ZP_04797812.1| recombination protein RecR [Staphylococcus epidermidis W23144]
 gi|251811245|ref|ZP_04825718.1| recombination protein RecR [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874601|ref|ZP_06283483.1| recombination protein RecR [Staphylococcus epidermidis SK135]
 gi|293367697|ref|ZP_06614349.1| recombination protein R [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|33301520|sp|Q8CMS3|RECR_STAES RecName: Full=Recombination protein recR
 gi|71152040|sp|Q5HRS7|RECR_STAEQ RecName: Full=Recombination protein recR
 gi|27316772|gb|AAO05947.1|AE016751_242 recombination protein [Staphylococcus epidermidis ATCC 12228]
 gi|57636770|gb|AAW53558.1| recombination protein RecR [Staphylococcus epidermidis RP62A]
 gi|242233316|gb|EES35628.1| recombination protein RecR [Staphylococcus epidermidis W23144]
 gi|251805206|gb|EES57863.1| recombination protein RecR [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296525|gb|EFA89037.1| recombination protein RecR [Staphylococcus epidermidis SK135]
 gi|291318267|gb|EFE58661.1| recombination protein R [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399735|gb|EFV87983.1| recombination protein RecR [Staphylococcus epidermidis FRI909]
 gi|329727986|gb|EGG64433.1| recombination protein RecR [Staphylococcus epidermidis VCU144]
 gi|329734389|gb|EGG70703.1| recombination protein RecR [Staphylococcus epidermidis VCU028]
 gi|329736120|gb|EGG72393.1| recombination protein RecR [Staphylococcus epidermidis VCU045]
          Length = 198

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK-GKAISLSSVV 139
                ++PGI  K A R+     ++K    +  +  +
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVKFAKAL 47


>gi|116512593|ref|YP_811500.1| ATP-dependent RecD/TraA family DNA helicase [Lactococcus lactis
           subsp. cremoris SK11]
 gi|116108247|gb|ABJ73387.1| ATP-dependent DNA helicase, RecD/TraA family [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 833

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 112 QIPGISMKIASRIM 125
           + PGI  K A +I+
Sbjct: 97  KFPGIGKKTAEKIV 110


>gi|325298171|ref|YP_004258088.1| Recombination protein recR [Bacteroides salanitronis DSM 18170]
 gi|324317724|gb|ADY35615.1| Recombination protein recR [Bacteroides salanitronis DSM 18170]
          Length = 206

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128
            +++ +     A++PGI  K A R++  L
Sbjct: 7   SALLEKAVDEFAKLPGIGRKTAMRLVLYL 35


>gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1]
 gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|281414408|ref|ZP_06246150.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 549

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 33/145 (22%)

Query: 56  DQIRLFGFLSDLDRQ----WFMLL--QSVQGVGARVAMGVLSRI-TATELVESIILQNSK 108
           + +RLF    +L++      +  L   S++ VG   A  + +   + T L  +    +  
Sbjct: 345 NTLRLF---DELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRAAAEAGDRD 401

Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA--- 163
            +A+I G+       I+ +      +L     +D     V++  A   +M      +   
Sbjct: 402 RLAEIDGVGP-----IIAD------ALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPR 450

Query: 164 -ISALV-----NL-GYGQDQATTAV 181
            +  L      +L G+ +D A  A+
Sbjct: 451 TLEGLTVVVTGSLEGFSRDSAKEAI 475


>gi|281413115|ref|YP_003347194.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga naphthophila RKU-10]
 gi|281374218|gb|ADA67780.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga naphthophila RKU-10]
          Length = 181

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 20/127 (15%)

Query: 73  MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
             L S+ G+G   A  ++  R +             + +  + GI  K   +I      +
Sbjct: 55  EDLMSIPGIGPVKAQRIIDYRESHGGFSS------VEELKNVSGIGEKTLEKI-----SR 103

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
            +++  V Q     V K   +  S+          L  L Y  +    A+V   +K    
Sbjct: 104 YVTVEGVEQHIKREVTKLNVNTASVEE--------LETLPYIGEVKAKAIVEYREKNGPF 155

Query: 192 ADDSQII 198
                ++
Sbjct: 156 RSPEDLL 162


>gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202]
 gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1]
          Length = 740

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
            S++ VG   A  + +   +   VE+I   + + +A + G+       I+ E    ++  
Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183
              V      +++  A    M      A    L  L         G+ +D+A  A+VS
Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683


>gi|311745661|ref|ZP_07719446.1| recombination protein RecR [Algoriphagus sp. PR1]
 gi|126575099|gb|EAZ79449.1| recombination protein RecR [Algoriphagus sp. PR1]
          Length = 205

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
              I+++PGI  K A R+   L
Sbjct: 12  VTEISRLPGIGKKTALRLALHL 33


>gi|83720331|ref|YP_441035.1| TPR domain-containing protein [Burkholderia thailandensis E264]
 gi|83654156|gb|ABC38219.1| TPR domain protein [Burkholderia thailandensis E264]
          Length = 606

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPDSQRAAQVDAALLVLGGKPAEA 163

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 164 QPMLAQELARATGDNRGQAII--ALQAL 189


>gi|78042767|ref|YP_361462.1| recombination protein RecR [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123575269|sp|Q3A8S2|RECR_CARHZ RecName: Full=Recombination protein recR
 gi|77994882|gb|ABB13781.1| recombination protein RecR [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 199

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + +A++PGI  K A ++   L
Sbjct: 11  IEHLAKLPGIGPKTAQKLALYL 32


>gi|115522949|ref|YP_779860.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisA53]
 gi|115516896|gb|ABJ04880.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisA53]
          Length = 680

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81
           ++ P R    L +  D    F+   +R +  R   F+    R+          LQ + G+
Sbjct: 577 LFMPGREAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 631

Query: 82  GARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           G      +L    T  E+  +  L +   + ++PGIS + A RI
Sbjct: 632 GPSRKRALLHHFGTLKEIERA-SLGD---LGKVPGISAESARRI 671


>gi|257140312|ref|ZP_05588574.1| TPR domain-containing protein [Burkholderia thailandensis E264]
          Length = 604

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 108 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPDSQRAAQVDAALLVLGGKPAEA 161

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 162 QPMLAQELARATGDNRGQAII--ALQAL 187


>gi|166711625|ref|ZP_02242832.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 357

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGIS 117
           F  L ++ G+G   A  +LS+        +I+  N K  + +  GI 
Sbjct: 115 FDALLALPGIGRSTAGAILSQAWNDPF--AIMDGNVKRVLTRFHGIG 159


>gi|161527945|ref|YP_001581771.1| ERCC4 domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160339246|gb|ABX12333.1| ERCC4 domain protein [Nitrosopumilus maritimus SCM1]
          Length = 228

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
            SDL+RQ    L S+ G+G + A+ +L +  T  ++  +   +    ++++ G+    A 
Sbjct: 149 SSDLERQQLSSLCSLPGIGEKFAIRMLEKFGTPLKVFTATTAE----LSKVEGLGDARAK 204

Query: 123 RI--MTELKGKAISLSS 137
           +I  + + K K +  S+
Sbjct: 205 KIKKVLDTKSKHLKKSN 221


>gi|86741639|ref|YP_482039.1| serine/threonine protein kinase [Frankia sp. CcI3]
 gi|86568501|gb|ABD12310.1| serine/threonine protein kinase [Frankia sp. CcI3]
          Length = 1406

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 113 IPGISMKIASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVN 169
           +PGI  K   ++  +L  +      SS  ++       ++     +P     A+  AL+ 
Sbjct: 821 LPGIGTKTRQQLRADL-DRLAGQVTSSPAERPTEPTLLDRVAAGLIPRATDRAVAEALLG 879

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201
           LG   +Q   A  SV    K +  + + +R A
Sbjct: 880 LG---EQGGNAWTSVRDAAKALDREQRTVRQA 908


>gi|58582767|ref|YP_201783.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624643|ref|YP_452015.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188577554|ref|YP_001914483.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58427361|gb|AAW76398.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368583|dbj|BAE69741.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188522006|gb|ACD59951.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 357

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGIS 117
           F  L ++ G+G   A  +LS+        +I+  N K  + +  GI 
Sbjct: 115 FDALLALPGIGRSTAGAILSQAWNDPF--AIMDGNVKRVLTRFHGIG 159


>gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6]
 gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6]
          Length = 885

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 94  TATELVE--SIILQNSKVIAQIPGISMKIASRIMT-------------ELKGKAISLSSV 138
           T  +++E  +++   +  I  +PG+  K A++I+              ELK K    S  
Sbjct: 174 TPAQIIELKALMGDTADNIPGLPGVGPKTATKILLDYGTIENAHDHVEELKPKKAMESMR 233

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISA 166
              D++ ++K+ A I +     +    A
Sbjct: 234 DHWDLAVLSKQLATINTDSPVELELSEA 261


>gi|225710744|gb|ACO11218.1| Deoxyhypusine hydroxylase [Caligus rogercresseyi]
          Length = 304

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 29/139 (20%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           ++ F  + +++G+G + A+ ++       L    I +++  +                 L
Sbjct: 18  KERFRAVFTLRGLGGKTALDIM-------LKT--IQEDTSEL-----------------L 51

Query: 129 KGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
           K +   +   +Q   +              P     A  AL  LG   D    ++   L 
Sbjct: 52  KHEIAYVMGQMQDPAAIEGLIDIPNGPKMEPIVRHEAAEALGALG-KDDNIRASLAKALA 110

Query: 187 KEKNIADDSQIIRLALRAI 205
            ++   +  +   LALR +
Sbjct: 111 SKELPVEVEETCSLALRKL 129


>gi|325479360|gb|EGC82456.1| helicase, RecD/TraA family [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 719

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           F+   +++G+G + A  +  +     +   I+  N   + ++ GI  K    I+ 
Sbjct: 81  FLSSGNLKGIGKKTAKAIYDKFGKESID--IVYNNPNQLLEVEGIGKKKLEDIIL 133


>gi|257484568|ref|ZP_05638609.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 166

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124
            L+ V GVG      +L       EL  + I +    IA+ PGIS K+A  I
Sbjct: 112 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 159


>gi|213422191|ref|ZP_03355257.1| UvrC excinuclease ABC subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 76

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
            L++++GVG +    +L  +     L  + + +    IA++PGIS  +A +I   LK
Sbjct: 23  TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 75


>gi|125624704|ref|YP_001033187.1| exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493512|emb|CAL98491.1| exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071499|gb|ADJ60899.1| exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 833

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 112 QIPGISMKIASRIM 125
           + PGI  K A +I+
Sbjct: 97  KFPGIGKKTAEKIV 110


>gi|294055445|ref|YP_003549103.1| helicase, RecD/TraA family [Coraliomargarita akajimensis DSM 45221]
 gi|293614778|gb|ADE54933.1| helicase, RecD/TraA family [Coraliomargarita akajimensis DSM 45221]
          Length = 773

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           V+G+G   A  ++    A  L   +I ++S  + ++PGI    A  I
Sbjct: 97  VKGIGRSYAKKIVDFFGADTLR--VISEDSGRLHEVPGIGKARAKSI 141


>gi|226355493|ref|YP_002785233.1| recombination protein RecR [Deinococcus deserti VCD115]
 gi|259563690|sp|C1D0V5|RECR_DEIDV RecName: Full=Recombination protein recR
 gi|226317483|gb|ACO45479.1| putative recombination protein RecR [Deinococcus deserti VCD115]
          Length = 198

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
              LV  I       ++++PGI  K A R+   L
Sbjct: 4   PPSLVSLIRE-----LSRLPGIGPKSAQRLAFHL 32


>gi|218288650|ref|ZP_03492927.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241307|gb|EED08482.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 314

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
             L+++ GVG + A  +L+   A          + + +  + GI  K 
Sbjct: 248 ETLETLPGVGPKRAAAILAYRQAHGPFR-----DLESLRHVKGIGEKT 290


>gi|330502979|ref|YP_004379848.1| recombination protein RecR [Pseudomonas mendocina NK-01]
 gi|328917265|gb|AEB58096.1| recombination protein RecR [Pseudomonas mendocina NK-01]
          Length = 199

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
              +  +PG+  K A R+  +L  +  S    + Q ++   +   H     S + + +
Sbjct: 11  IDSLRILPGVGQKTAQRMALQLLERDRSGGQRLAQALNAAMEGVGHCKRCRSLSEDEV 68


>gi|290967950|ref|ZP_06559500.1| excinuclease ABC, C subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782089|gb|EFD94667.1| excinuclease ABC, C subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 612

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITA-TELVESIILQNSKVIAQIPGISMKIAS----- 122
           R    +L  ++G+G +    +        E+ ++    + + +A +PG++ ++A      
Sbjct: 539 RALVSILDHIEGIGPKRRRALWQAFKNLEEMKQA----DVETLAAVPGMNRQVAENVYQF 594

Query: 123 -RIMTELKGKAISLSSVV 139
            R+ T+ K K   ++  V
Sbjct: 595 FRLGTDEKRKLTGVAKSV 612


>gi|258511977|ref|YP_003185411.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478703|gb|ACV59022.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 301

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
             L+++ GVG + A  +L+   A          + + +  + GI  K 
Sbjct: 235 ETLETLPGVGPKRAAAILAYRQAHGPFR-----DLESLRHVKGIGEKT 277


>gi|217966693|ref|YP_002352199.1| recombination protein RecR [Dictyoglomus turgidum DSM 6724]
 gi|217335792|gb|ACK41585.1| recombination protein RecR [Dictyoglomus turgidum DSM 6724]
          Length = 200

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 110 IAQIPGISMKIASRI 124
           + ++PGI  K+A RI
Sbjct: 14  LTKLPGIGPKLAQRI 28


>gi|15923470|ref|NP_371004.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156978808|ref|YP_001441067.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255005273|ref|ZP_05143874.2| recombination protein RecR [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|20139575|sp|Q932G3|RECR_STAAM RecName: Full=Recombination protein recR
 gi|166221970|sp|A7WYM0|RECR_STAA1 RecName: Full=Recombination protein recR
 gi|14246248|dbj|BAB56642.1| recombination protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720943|dbj|BAF77360.1| recombination protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 198

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK 129
                ++PGI  K A R+     ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHTLDMK 36


>gi|120600544|ref|YP_965118.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560637|gb|ABM26564.1| helix-hairpin-helix motif [Shewanella sp. W3-18-1]
          Length = 175

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 24  VCYIIYCPIRT----LSCLGKIGDFCTLFV---ETHMRQDQIRLFGFLSDLDR--QWFML 74
           +  +    I      L  L +      L+    + + R++++ L G      +  Q F+ 
Sbjct: 64  IGTLCSISINFHIPILRSLSQTETAKILYFCASQLNRRENELTLTGRKPKRKKNQQLFI- 122

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQS+  V  ++A  +L        +E+I     + + ++ GI  + A +I
Sbjct: 123 LQSLPEVDPKLASRLLYHFKN---IEAIFTAPEEALIRVEGIGKEKARKI 169


>gi|297160410|gb|ADI10122.1| exodeoxyribonuclease V [Streptomyces bingchenggensis BCW-1]
          Length = 736

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           ++G+G   A  +        L   II +  K + ++PG+  K   +I
Sbjct: 94  IKGIGPVFADRITEHFGLDTLQ--IIEEEPKRLIEVPGLGPKRTKKI 138


>gi|294628456|ref|ZP_06707016.1| 5'-3' exonuclease [Streptomyces sp. e14]
 gi|292831789|gb|EFF90138.1| 5'-3' exonuclease [Streptomyces sp. e14]
          Length = 306

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 21/113 (18%)

Query: 101 SIILQNSK-VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159
           +++  +    +  +PG+  K A++++ E    A  L++V          ++  +     +
Sbjct: 192 ALLRGDPSDGLPGVPGVGEKTAAKLLAEFGDLAGILAAVDDPKAKLTPAQRKRLDEARPY 251

Query: 160 AINA-----ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
              A     ++A V L     +  TA+    +              ALR ++ 
Sbjct: 252 LAVAPKVVRVAADVPL----PEVATALPRAPRDA-----------EALRELAA 289


>gi|282882711|ref|ZP_06291318.1| late competence protein [Peptoniphilus lacrimalis 315-B]
 gi|281297372|gb|EFA89861.1| late competence protein [Peptoniphilus lacrimalis 315-B]
          Length = 204

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 103 ILQNSKVIAQIPGISMKIASRIMTELKGKA 132
             ++   + +IPG+  K A +I+ + + K 
Sbjct: 149 ASKDE--LMKIPGVGPKTADKII-DYREKF 175


>gi|288942008|ref|YP_003444248.1| ADP-ribosylation/Crystallin J1 [Allochromatium vinosum DSM 180]
 gi|288897380|gb|ADC63216.1| ADP-ribosylation/Crystallin J1 [Allochromatium vinosum DSM 180]
          Length = 534

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 164 ISA--LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           ++A  LV LG+    A  AV +V       AD    +R ALR +
Sbjct: 140 VAARLLVELGFEPPLALAAVRAVRPGSVETADQEAYVR-ALRPL 182


>gi|317506737|ref|ZP_07964519.1| recombination protein RecR [Segniliparus rugosus ATCC BAA-974]
 gi|316254956|gb|EFV14244.1| recombination protein RecR [Segniliparus rugosus ATCC BAA-974]
          Length = 203

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
           ++++PG+  K A RI   L
Sbjct: 13  LSRLPGVGPKSAQRIAFHL 31


>gi|312792794|ref|YP_004025717.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179934|gb|ADQ40104.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 405

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 245 EEDLERLDTIPGVGRRTAEHIIAE 268


>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
 gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
          Length = 886

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 22/135 (16%)

Query: 62  GFLSDL---DRQWFMLLQSVQGV-GARVAMGVLSRITATELVE------------SIILQ 105
           GF + +   DR  F L+ +   V      + VL R T   + E            + +  
Sbjct: 130 GFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGLTPAQYPDFAALRG 189

Query: 106 NSK-VIAQIPGISMKIASRIMTE---LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161
           +    +  IPG+  K A++ + E   L  + +  +  V+       +E+     M     
Sbjct: 190 DPSDNLPNIPGVGPKTATKWIVEYGSL-DELLERADEVKGKAGTSLRERLEQVRMNRTLT 248

Query: 162 NAISALVNLGYGQDQ 176
             I  L  L Y  DQ
Sbjct: 249 EMIKDLE-LPYSPDQ 262


>gi|317128232|ref|YP_004094514.1| helicase, RecD/TraA family [Bacillus cellulosilyticus DSM 2522]
 gi|315473180|gb|ADU29783.1| helicase, RecD/TraA family [Bacillus cellulosilyticus DSM 2522]
          Length = 763

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 112 QIPGISMKIASRIM 125
           + PGI  K A +I+
Sbjct: 100 RFPGIGKKTAEKIV 113


>gi|116872913|ref|YP_849694.1| ComEA family DNA-binding competence protein [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741791|emb|CAK20915.1| DNA-binding competence protein 1, ComEA family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 201

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 150 LQQVPGIGDSKATAIIEYREKEGLYQTIED-----LKNVSGIGEKTVEKL 194


>gi|21282164|ref|NP_645252.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485344|ref|YP_042565.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651361|ref|YP_185410.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           COL]
 gi|82750187|ref|YP_415928.1| recombination protein RecR [Staphylococcus aureus RF122]
 gi|87159968|ref|YP_493166.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194235|ref|YP_499027.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151220656|ref|YP_001331478.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508725|ref|YP_001574384.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142545|ref|ZP_03567038.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253730828|ref|ZP_04864993.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253735212|ref|ZP_04869377.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257424590|ref|ZP_05601019.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427256|ref|ZP_05603658.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429892|ref|ZP_05606279.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432595|ref|ZP_05608958.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435500|ref|ZP_05611551.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           M876]
 gi|258424487|ref|ZP_05687364.1| recombination protein RecR [Staphylococcus aureus A9635]
 gi|258452486|ref|ZP_05700494.1| recombination protein recR [Staphylococcus aureus A5948]
 gi|262049734|ref|ZP_06022600.1| recombination protein RecR [Staphylococcus aureus D30]
 gi|262051992|ref|ZP_06024204.1| recombination protein RecR [Staphylococcus aureus 930918-3]
 gi|282912685|ref|ZP_06320481.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913305|ref|ZP_06321097.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           M899]
 gi|282915796|ref|ZP_06323565.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           D139]
 gi|282918259|ref|ZP_06326000.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           C427]
 gi|282922933|ref|ZP_06330623.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           C101]
 gi|282924530|ref|ZP_06332200.1| recombination protein RecR [Staphylococcus aureus A9765]
 gi|283768196|ref|ZP_06341110.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           H19]
 gi|284023489|ref|ZP_06377887.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           132]
 gi|293498352|ref|ZP_06666206.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509293|ref|ZP_06668010.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           M809]
 gi|293550560|ref|ZP_06673232.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294850660|ref|ZP_06791383.1| recombination protein RecR [Staphylococcus aureus A9754]
 gi|297209023|ref|ZP_06925423.1| recombination protein R [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300911026|ref|ZP_07128475.1| recombination protein R [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380494|ref|ZP_07363172.1| recombination protein R [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|24212225|sp|Q8NY07|RECR_STAAW RecName: Full=Recombination protein recR
 gi|56749540|sp|Q6GC08|RECR_STAAS RecName: Full=Recombination protein recR
 gi|71152039|sp|Q5HIJ7|RECR_STAAC RecName: Full=Recombination protein recR
 gi|122540160|sp|Q2G0T3|RECR_STAA8 RecName: Full=Recombination protein recR
 gi|123487161|sp|Q2FJG2|RECR_STAA3 RecName: Full=Recombination protein recR
 gi|123548602|sp|Q2YVW5|RECR_STAAB RecName: Full=Recombination protein recR
 gi|172048764|sp|A6QED4|RECR_STAAE RecName: Full=Recombination protein recR
 gi|189029379|sp|A8Z0X4|RECR_STAAT RecName: Full=Recombination protein recR
 gi|21203600|dbj|BAB94300.1| recombination protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49243787|emb|CAG42212.1| putative recombination protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285547|gb|AAW37641.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           COL]
 gi|82655718|emb|CAI80117.1| recombination protein [Staphylococcus aureus RF122]
 gi|87125942|gb|ABD20456.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201793|gb|ABD29603.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150373456|dbj|BAF66716.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367534|gb|ABX28505.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725440|gb|EES94169.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726876|gb|EES95605.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257273608|gb|EEV05710.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276887|gb|EEV08338.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257280373|gb|EEV10960.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283474|gb|EEV13606.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257286096|gb|EEV16212.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           M876]
 gi|257845082|gb|EEV69119.1| recombination protein RecR [Staphylococcus aureus A9635]
 gi|257859886|gb|EEV82726.1| recombination protein recR [Staphylococcus aureus A5948]
 gi|259160121|gb|EEW45153.1| recombination protein RecR [Staphylococcus aureus 930918-3]
 gi|259162196|gb|EEW46772.1| recombination protein RecR [Staphylococcus aureus D30]
 gi|269940051|emb|CBI48427.1| putative recombination protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282315154|gb|EFB45540.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317956|gb|EFB48324.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           C427]
 gi|282320334|gb|EFB50675.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           D139]
 gi|282323405|gb|EFB53724.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324381|gb|EFB54697.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282592839|gb|EFB97844.1| recombination protein RecR [Staphylococcus aureus A9765]
 gi|283461141|gb|EFC08226.1| recombination protein recR [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469772|emb|CAQ48983.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           ST398]
 gi|290919607|gb|EFD96683.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291097283|gb|EFE27541.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467932|gb|EFF10441.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           M809]
 gi|294822497|gb|EFG38943.1| recombination protein RecR [Staphylococcus aureus A9754]
 gi|296886294|gb|EFH25227.1| recombination protein R [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|298693809|gb|ADI97031.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300887205|gb|EFK82401.1| recombination protein R [Staphylococcus aureus subsp. aureus TCH70]
 gi|302332193|gb|ADL22386.1| putative recombination protein [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302750370|gb|ADL64547.1| putative recombination protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304341012|gb|EFM06934.1| recombination protein R [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436433|gb|ADQ75504.1| recombination protein R [Staphylococcus aureus subsp. aureus TCH60]
 gi|315196726|gb|EFU27072.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139231|gb|EFW31110.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142045|gb|EFW33870.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323438497|gb|EGA96248.1| recombination protein RecR [Staphylococcus aureus O11]
 gi|323441333|gb|EGA98996.1| recombination protein RecR [Staphylococcus aureus O46]
 gi|329313198|gb|AEB87611.1| Recombination protein recR [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725116|gb|EGG61609.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           21189]
          Length = 198

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK 129
                ++PGI  K A R+     ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHTLDMK 36


>gi|85716039|ref|ZP_01047016.1| excinuclease ABC subunit C [Nitrobacter sp. Nb-311A]
 gi|85697237|gb|EAQ35118.1| excinuclease ABC subunit C [Nitrobacter sp. Nb-311A]
          Length = 693

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G      +L        ++ I   +   + ++PGIS + A RI
Sbjct: 638 LQEVPGIGPARKRALLHHFGT---IKEIERASVADLGKVPGISAESARRI 684


>gi|315303231|ref|ZP_07873880.1| ComE operon protein 1 [Listeria ivanovii FSL F6-596]
 gi|313628401|gb|EFR96885.1| ComE operon protein 1 [Listeria ivanovii FSL F6-596]
          Length = 202

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ+V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 151 LQTVPGIGESKATAIIEYREKEGLFQTIED-----LQNVTGIGEKTIEKL 195


>gi|297565571|ref|YP_003684543.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
 gi|296850020|gb|ADH63035.1| PHP domain protein [Meiothermus silvanus DSM 9946]
          Length = 532

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 19/122 (15%)

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI------ASR 123
           + F     V+G+G +    +        L E I       +  IPG   K       A+R
Sbjct: 89  EMFR----VRGLGPKRIRALWDNH-VDSLEELIRHAEEGKLRGIPGFGAKTEQNLLEAAR 143

Query: 124 IMTE-LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-----LVNLGYGQDQA 177
              E L+   + +     Q +            +       +       L+ L   + +A
Sbjct: 144 FALENLRRVLLPVGLGAAQLLLTDLAGAGIQAELTGSLRRGLETVGNVDLIAL--AEPEA 201

Query: 178 TT 179
             
Sbjct: 202 AA 203


>gi|168700666|ref|ZP_02732943.1| recombinant protein RecR [Gemmata obscuriglobus UQM 2246]
          Length = 201

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 110 IAQIPGISMKIASRI 124
           + ++PG+  K A RI
Sbjct: 17  LTKLPGVGPKSAERI 31


>gi|156937851|ref|YP_001435647.1| ERCC4 domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156566835|gb|ABU82240.1| ERCC4 domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 246

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           Q F L+Q + GVG ++A  +L R  +   V ++   +   ++++ G+    A  I+
Sbjct: 170 QLF-LVQCLPGVGPKLAEKLLERFGS---VRAVFNASVAELSKVEGLGTNKAQEIV 221


>gi|150021611|ref|YP_001306965.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermosipho melanesiensis BI429]
 gi|149794132|gb|ABR31580.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermosipho melanesiensis BI429]
          Length = 184

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 14/77 (18%)

Query: 75  LQSVQGVGARV------------AMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIA 121
           L +V G+G               A  + +  + + ++  +I   + + + ++PGI    A
Sbjct: 86  LLNVSGIGPSTLKKIKPFIKIKTANVITNSPSGSEDVKININNASVEELMKLPGIGKVKA 145

Query: 122 SRIMTELKGKAISLSSV 138
             I+ E + K  ++ S 
Sbjct: 146 QEII-EFRKKFGNVQSF 161


>gi|146307667|ref|YP_001188132.1| recombination protein RecR [Pseudomonas mendocina ymp]
 gi|166221955|sp|A4XVN4|RECR_PSEMY RecName: Full=Recombination protein recR
 gi|145575868|gb|ABP85400.1| recombination protein RecR [Pseudomonas mendocina ymp]
          Length = 199

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
              +  +PG+  K A R+  +L  +  S    + Q ++   +   H     S + + +
Sbjct: 11  IDSLRILPGVGQKTAQRMALQLLERDRSGGQRLAQALNAAMEGVGHCKRCRSLSEDEV 68


>gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
 gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824]
          Length = 669

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 31/201 (15%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90
            TLSC  ++       V    R+  + + GF      Q F  L  +S+  +  R+    L
Sbjct: 428 NTLSCKPQM---VKSIVHFASRE-AMNIEGFSEKTAEQLFEKLNIKSISDL-YRITKEEL 482

Query: 91  SRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTELKG-----KAI 133
             +       A+ L+ +I      +         IP +  K A+ +  + K      KA 
Sbjct: 483 MSLDKFKDKKASNLINAIEKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKKAS 542

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ-DQATTAVVSVLKKEKNIA 192
               ++ QD+  +  E             +++ L  LG     + +  V +    +  +A
Sbjct: 543 YDELILVQDIGSIVAESIVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVA 602

Query: 193 DDS------QIIRLALRAISC 207
             +        I+  L ++  
Sbjct: 603 TGTLQNYSRTAIKEKLESLGA 623


>gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium pseudotuberculosis I19]
          Length = 886

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 22/135 (16%)

Query: 62  GFLSDL---DRQWFMLLQSVQGV-GARVAMGVLSRITATELVE------------SIILQ 105
           GF + +   DR  F L+ +   V      + VL R T   + E            + +  
Sbjct: 130 GFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGLTPAQYPDFAALRG 189

Query: 106 NSK-VIAQIPGISMKIASRIMTE---LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161
           +    +  IPG+  K A++ + E   L  + +  +  V+       +E+     M     
Sbjct: 190 DPSDNLPNIPGVGPKTATKWIVEYGSL-DELLERADEVKGKAGTSLRERLEQVRMNRTLT 248

Query: 162 NAISALVNLGYGQDQ 176
             I  L  L Y  DQ
Sbjct: 249 EMIKDLE-LPYSPDQ 262


>gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 667

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 25/181 (13%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90
            TLSC  ++       V  +  +D + + GF      Q F  L  +S+  +  ++    L
Sbjct: 425 NTLSCKPQL---VKTIVH-YASRDAMNIAGFSEKTAEQLFEKLNIKSISDL-YKLKKEDL 479

Query: 91  SRIT------ATELVESIILQNSKVIAQ------IPGISMKIASRIMTELKG----KAIS 134
             +       A  L+ ++       +        IP + +K A  I+ + K     K  +
Sbjct: 480 INLEKFGDKKAENLLNAVEGSKECKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT 539

Query: 135 LSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD-QATTAVVSVLKKEKNIA 192
              +V  QD+  +  +           I+ I  L++LG          V S+ K +  +A
Sbjct: 540 FEELVSVQDVGDIVAKDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVA 599

Query: 193 D 193
            
Sbjct: 600 T 600


>gi|256825143|ref|YP_003149103.1| Excinuclease ABC subunit C [Kytococcus sedentarius DSM 20547]
 gi|256688536|gb|ACV06338.1| Excinuclease ABC subunit C [Kytococcus sedentarius DSM 20547]
          Length = 651

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
            L +V G+G      +L        V +I     + +A +PGI   +A
Sbjct: 582 ELDTVPGLGPARRRALLEAFGT---VRAIRAATPEELAAVPGIGPGLA 626


>gi|254446646|ref|ZP_05060122.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
 gi|198260954|gb|EDY85262.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
          Length = 549

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 5  IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK--IGDFCTLFVETHMRQDQIRLFG 62
          +KG I  + ++ V++D+ G       P +  S LG+  IG+   +F+E    ++   L  
Sbjct: 19 VKGTITEIRQNEVVVDIGGKS-EGLVPGQEFSDLGELQIGEEIEVFLEKLEDKEGNPLLS 77

Query: 63 FLSDLDRQ 70
          F     ++
Sbjct: 78 FDKAEQKK 85


>gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
 gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
          Length = 669

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 76  QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135
             ++ VG R A  +     +   + +  +++   +  IP I  KIA  I+ +   +  + 
Sbjct: 514 LGIRHVGERAAKILARHFGSMSALMAATVED---LTVIPEIGPKIAESIV-DYFARPENK 569

Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALV---NL-GYGQDQATTAVVSV 184
           + + + D + VN E+A+  + P     A    V    L G+ + +A  A+  +
Sbjct: 570 TLIQRLDRAGVNMEEANQQAEPGQQPLAGKTFVITGTLEGFSRQEAQRAIEEL 622


>gi|312794524|ref|YP_004027447.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312794549|ref|YP_004027472.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181664|gb|ADQ41834.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181689|gb|ADQ41859.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 405

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 245 EEDLERLDTIPGVGRRTAEHIIAE 268


>gi|312794480|ref|YP_004027403.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181620|gb|ADQ41790.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 405

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 245 EEDLERLDTIPGVGRRTAEHIIAE 268


>gi|312794023|ref|YP_004026946.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181163|gb|ADQ41333.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 405

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 245 EEDLERLDTIPGVGRRTAEHIIAE 268


>gi|242372723|ref|ZP_04818297.1| recombination protein RecR [Staphylococcus epidermidis M23864:W1]
 gi|242349640|gb|EES41241.1| recombination protein RecR [Staphylococcus epidermidis M23864:W1]
          Length = 198

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK 129
                ++PGI  K A R+     ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHTLDMK 36


>gi|195566235|ref|XP_002106692.1| GD17033 [Drosophila simulans]
 gi|194204078|gb|EDX17654.1| GD17033 [Drosophila simulans]
          Length = 213

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
            +  M   +R      ++ +   N K + +IPGI  K A
Sbjct: 138 PKAWMANNTRC----FLDLLNNGNVKQLQEIPGIGPKSA 172


>gi|304440575|ref|ZP_07400461.1| recombination protein R [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370951|gb|EFM24571.1| recombination protein R [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 196

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 110 IAQIPGISMKIASRI---MTELKGKAISLSSVVQQDMSCVNKEQ 150
           + ++PG+  K A RI   + E + K  +         +  N E+
Sbjct: 12  LTKLPGVGDKSAERILYYILE-QDKEEARGLAKAIVDAAENIEE 54


>gi|295100614|emb|CBK98159.1| helicase, putative, RecD/TraA family [Faecalibacterium prausnitzii
           L2-6]
          Length = 739

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           F+  +S+  +GAR A  ++ +  A  L   +I  +   +  IPGIS   A RI  E K
Sbjct: 86  FLASRSLPYIGARTADKIIDKFGAAALE--VIANDPAQLTLIPGISADKADRIQQEFK 141


>gi|162148589|ref|YP_001603050.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787166|emb|CAP56758.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 728

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           ++G+G   A  ++      E V  +I Q    + ++ GI  K A RI+
Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPHRLREVTGIGPKRAERIV 145


>gi|78184972|ref|YP_377407.1| recombination protein RecR [Synechococcus sp. CC9902]
 gi|123581335|sp|Q3AX77|RECR_SYNS9 RecName: Full=Recombination protein recR
 gi|78169266|gb|ABB26363.1| DNA replication and repair protein RecR [Synechococcus sp. CC9902]
          Length = 192

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
                ++PGI  + A R+   L
Sbjct: 5   IDQFQRLPGIGPRTAQRLALHL 26


>gi|194337622|ref|YP_002019416.1| hypothetical protein Ppha_2639 [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310099|gb|ACF44799.1| conserved hypothetical protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 417

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 23/112 (20%)

Query: 24  VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR---------QWFM 73
           V Y  Y P+   + L  +     L     +     +R +GF S  +          + F 
Sbjct: 250 VYYSAYVPVSDDNRLPVLAAPPLLREHRLYQADWLLRFYGF-SAEEILSDEAPNLDESFD 308

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                     + A  +            I   +   + ++PGI +  A RI+
Sbjct: 309 ---------PKTAWALRH---PEFFPIEINRADYGTLLRVPGIGVVSARRII 348


>gi|296393612|ref|YP_003658496.1| recombination protein RecR [Segniliparus rotundus DSM 44985]
 gi|296180759|gb|ADG97665.1| recombination protein RecR [Segniliparus rotundus DSM 44985]
          Length = 212

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
           ++++PG+  K A RI   L
Sbjct: 13  LSRLPGVGPKGAQRIAFHL 31


>gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
          Length = 669

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 31/201 (15%)

Query: 33  RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90
            TLSC  ++       V    R+  + + GF      Q F  L  +S+  +  R+    L
Sbjct: 428 NTLSCKPQM---VKSIVHFASRE-AMNIEGFSEKTAEQLFEKLNIKSISDL-YRITKEEL 482

Query: 91  SRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTELKG-----KAI 133
             +       A+ L+ +I      +         IP +  K A+ +  + K      KA 
Sbjct: 483 MSLDKFKDKKASNLINAIEKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKKAS 542

Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ-DQATTAVVSVLKKEKNIA 192
               ++ QD+  +  E             +++ L  LG     + +  V +    +  +A
Sbjct: 543 YDELILVQDIGSIVAESIVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVA 602

Query: 193 DDS------QIIRLALRAISC 207
             +        I+  L ++  
Sbjct: 603 TGTLQNYSRTAIKEKLESLGA 623


>gi|307327194|ref|ZP_07606382.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306887085|gb|EFN18083.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 581

 Score = 35.8 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 19/98 (19%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             L ++  +G + AM +   L   +  +L ++I       +  + G   K    I+    
Sbjct: 92  RELTAIPALGPKKAMILYEELEISSVDQLAQAIEEH---QLRDLKGFGPKSEENIL---- 144

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167
                        +     ++  +      A + ++AL
Sbjct: 145 ---------HGIALMRAAGDRIPLDEAMDVADDIVAAL 173


>gi|255532916|ref|YP_003093288.1| recombination protein RecR [Pedobacter heparinus DSM 2366]
 gi|255345900|gb|ACU05226.1| recombination protein RecR [Pedobacter heparinus DSM 2366]
          Length = 205

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131
               +++PG+  K A R++  L  K
Sbjct: 12  VNEFSKLPGVGQKTALRLVLHLLNK 36


>gi|167848580|ref|ZP_02474088.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei B7210]
          Length = 707

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|15926157|ref|NP_373690.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           N315]
 gi|148266938|ref|YP_001245881.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392984|ref|YP_001315659.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           JH1]
 gi|253315724|ref|ZP_04838937.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|257795399|ref|ZP_05644378.1| recombination protein RecR [Staphylococcus aureus A9781]
 gi|258413425|ref|ZP_05681700.1| recombination protein RecR [Staphylococcus aureus A9763]
 gi|258421453|ref|ZP_05684380.1| recombination protein RecR [Staphylococcus aureus A9719]
 gi|258436848|ref|ZP_05689188.1| recombination protein recR [Staphylococcus aureus A9299]
 gi|258444433|ref|ZP_05692767.1| recombination protein recR [Staphylococcus aureus A8115]
 gi|258445645|ref|ZP_05693825.1| recombination protein recR [Staphylococcus aureus A6300]
 gi|258448177|ref|ZP_05696306.1| recombination protein recR [Staphylococcus aureus A6224]
 gi|258456011|ref|ZP_05703966.1| recombination protein recR [Staphylococcus aureus A5937]
 gi|269202099|ref|YP_003281368.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893619|ref|ZP_06301852.1| recombination protein RecR [Staphylococcus aureus A8117]
 gi|282927513|ref|ZP_06335131.1| recombination protein RecR [Staphylococcus aureus A10102]
 gi|295405728|ref|ZP_06815538.1| recombination protein RecR [Staphylococcus aureus A8819]
 gi|296276915|ref|ZP_06859422.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297245637|ref|ZP_06929505.1| recombination protein RecR [Staphylococcus aureus A8796]
 gi|20139661|sp|Q99WC3|RECR_STAAN RecName: Full=Recombination protein recR
 gi|189029377|sp|A6TYV4|RECR_STAA2 RecName: Full=Recombination protein recR
 gi|189029378|sp|A5IQ32|RECR_STAA9 RecName: Full=Recombination protein recR
 gi|13700370|dbj|BAB41668.1| recombination protein [Staphylococcus aureus subsp. aureus N315]
 gi|147740007|gb|ABQ48305.1| DNA replication and repair protein RecR [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945436|gb|ABR51372.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257789371|gb|EEV27711.1| recombination protein RecR [Staphylococcus aureus A9781]
 gi|257839672|gb|EEV64141.1| recombination protein RecR [Staphylococcus aureus A9763]
 gi|257842877|gb|EEV67299.1| recombination protein RecR [Staphylococcus aureus A9719]
 gi|257848639|gb|EEV72626.1| recombination protein recR [Staphylococcus aureus A9299]
 gi|257850692|gb|EEV74640.1| recombination protein recR [Staphylococcus aureus A8115]
 gi|257855595|gb|EEV78530.1| recombination protein recR [Staphylococcus aureus A6300]
 gi|257858692|gb|EEV81566.1| recombination protein recR [Staphylococcus aureus A6224]
 gi|257862223|gb|EEV84996.1| recombination protein recR [Staphylococcus aureus A5937]
 gi|262074389|gb|ACY10362.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590837|gb|EFB95913.1| recombination protein RecR [Staphylococcus aureus A10102]
 gi|282764305|gb|EFC04432.1| recombination protein RecR [Staphylococcus aureus A8117]
 gi|285816179|gb|ADC36666.1| Recombination protein RecR [Staphylococcus aureus 04-02981]
 gi|294969803|gb|EFG45822.1| recombination protein RecR [Staphylococcus aureus A8819]
 gi|297177623|gb|EFH36874.1| recombination protein RecR [Staphylococcus aureus A8796]
 gi|312828975|emb|CBX33817.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315130110|gb|EFT86099.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329725651|gb|EGG62130.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           21172]
 gi|329730673|gb|EGG67054.1| recombination protein RecR [Staphylococcus aureus subsp. aureus
           21193]
          Length = 198

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK 129
                ++PGI  K A R+     ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHTLDMK 36


>gi|312878731|ref|ZP_07738543.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794492|gb|EFR11009.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 211

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 51  EEDLERLDTIPGVGRRTAEHIIAE 74


>gi|258545553|ref|ZP_05705787.1| recombination protein RecR [Cardiobacterium hominis ATCC 15826]
 gi|258519253|gb|EEV88112.1| recombination protein RecR [Cardiobacterium hominis ATCC 15826]
          Length = 201

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + +  +PG+  K A R+   L
Sbjct: 11  VQALTCLPGVGNKTAQRMALRL 32


>gi|257389025|ref|YP_003178798.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
 gi|257171332|gb|ACV49091.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 577

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           + SV+GVG + A  +   L   T  +L  +    +   I  + G   K   + + +
Sbjct: 95  ITSVEGVGPKTAGTLYEELGIETLDDLESAAEAGD---IQTVKGFGAKT-EQNILD 146


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 113 IPGISMKIASRIMTE------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---A 163
           +PGI  K A++++ +      L  +A  +    +++M   ++E A +             
Sbjct: 213 VPGIGPKTAAQLLEDYGSLDALLDRADEIKQKKRREMLIAHREDALLSRQLVTLDRHVPV 272

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201
             A  +LG        A+V  L+ E       + IR A
Sbjct: 273 EEAPEDLGLSPFD-HAALVRFLEDEMEFNTLPKRIREA 309


>gi|329119770|ref|ZP_08248447.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464115|gb|EGF10423.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200]
          Length = 647

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  + GVG +    +L+R      V +   ++   +AQ+ GIS  +A +I
Sbjct: 596 LSDIPGVGGKRRQALLTRFGGLRGVTAASKED---LAQVEGISKALAEKI 642


>gi|239941328|ref|ZP_04693265.1| putative exodeoxyribonuclease V [Streptomyces roseosporus NRRL
           15998]
 gi|239987790|ref|ZP_04708454.1| putative exodeoxyribonuclease V [Streptomyces roseosporus NRRL
           11379]
 gi|291444769|ref|ZP_06584159.1| deoxyribonuclease [Streptomyces roseosporus NRRL 15998]
 gi|291347716|gb|EFE74620.1| deoxyribonuclease [Streptomyces roseosporus NRRL 15998]
          Length = 741

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G  +A  + +      L   +I Q  K + ++PG+  K
Sbjct: 94  IKGIGPVMADRITTHFGVDTLD--VIEQEPKRLVEVPGLGPK 133


>gi|70727531|ref|YP_254447.1| recombination protein RecR [Staphylococcus haemolyticus JCSC1435]
 gi|123659170|sp|Q4L3D6|RECR_STAHJ RecName: Full=Recombination protein recR
 gi|68448257|dbj|BAE05841.1| recombination protein [Staphylococcus haemolyticus JCSC1435]
          Length = 198

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK 129
                ++PGI  K A R+     ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHTLDMK 36


>gi|90422420|ref|YP_530790.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisB18]
 gi|119367825|sp|Q21AW5|UVRC_RHOPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|90104434|gb|ABD86471.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisB18]
          Length = 699

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81
           ++ P R    L +  D    F+   +R +  R   F+    R+          LQ + G+
Sbjct: 596 LFMPDRLPIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 650

Query: 82  GARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           G      +L    T  E+  +  L +   + ++PGIS + A RI
Sbjct: 651 GPSRKRALLHHFGTLKEIERA-SLGD---LGKVPGISAESAKRI 690


>gi|228474164|ref|ZP_04058901.1| recombination protein RecR [Staphylococcus hominis SK119]
 gi|228271859|gb|EEK13196.1| recombination protein RecR [Staphylococcus hominis SK119]
          Length = 198

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK-GKAISLSSVV 139
                ++PGI  K A R+     ++K    +  +  +
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFYTLDMKEDDVVKFAKAL 47


>gi|116072458|ref|ZP_01469725.1| RecR protein [Synechococcus sp. BL107]
 gi|116064980|gb|EAU70739.1| RecR protein [Synechococcus sp. BL107]
          Length = 192

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
                ++PGI  + A R+   L
Sbjct: 5   IDQFQRLPGIGPRTAQRLALHL 26


>gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 931

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            V GVG + A  + +     E   +I  +N K +   PG+  K A +
Sbjct: 264 GVPGVGPKTAAQIFAEFPTLE---AI-QENEKALK--PGVQKKFAGQ 304


>gi|330953815|gb|EGH54075.1| recombination protein RecR [Pseudomonas syringae Cit 7]
          Length = 200

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
           +PG+  K A R+  +L  +  S  S + Q +        H  S  +    
Sbjct: 17  LPGVGQKTAQRMALQLLERDRSGGSRLAQALGQAMDGVGHCRSCRTLTEE 66


>gi|330899494|gb|EGH30913.1| recombination protein RecR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 200

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
           +PG+  K A R+  +L  +  S  S + Q +        H  S  +    
Sbjct: 17  LPGVGQKTAQRMALQLLERDRSGGSRLAQALGQAMDGVGHCRSCRTLTEE 66


>gi|223043449|ref|ZP_03613495.1| recombination protein RecR [Staphylococcus capitis SK14]
 gi|314935110|ref|ZP_07842469.1| recombination protein RecR [Staphylococcus caprae C87]
 gi|222443238|gb|EEE49337.1| recombination protein RecR [Staphylococcus capitis SK14]
 gi|313653040|gb|EFS16803.1| recombination protein RecR [Staphylococcus caprae C87]
          Length = 198

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK 129
                ++PGI  K A R+     ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHTLDMK 36


>gi|167617842|ref|ZP_02386473.1| TPR domain protein [Burkholderia thailandensis Bt4]
          Length = 396

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPDSQRAAQVDAALLVLGGKPAEA 163

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 164 QPMLAQELARATGDNRGQAII--ALQAL 189


>gi|314935125|ref|ZP_07842478.1| recombination protein RecR [Staphylococcus hominis subsp. hominis
           C80]
 gi|313656460|gb|EFS20199.1| recombination protein RecR [Staphylococcus hominis subsp. hominis
           C80]
          Length = 198

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK-GKAISLSSVV 139
                ++PGI  K A R+     ++K    +  +  +
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFYTLDMKEDDVVKFAKAL 47


>gi|312136909|ref|YP_004004246.1| dead/deah box helicase domain protein [Methanothermus fervidus DSM
           2088]
 gi|311224628|gb|ADP77484.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM
           2088]
          Length = 668

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
               L+  V+G+G R A  + +          I   + K + ++ GI  K+AS I
Sbjct: 614 DILHLVVRVKGLGRRRARKIFNMFGDD-----IASVSEKELQKVEGIGPKLASAI 663


>gi|222152176|ref|YP_002561336.1| recombination protein RecR [Macrococcus caseolyticus JCSC5402]
 gi|254790774|sp|B9E8X2|RECR_MACCJ RecName: Full=Recombination protein recR
 gi|222121305|dbj|BAH18640.1| recombination protein RecR [Macrococcus caseolyticus JCSC5402]
          Length = 198

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRI---MTELK 129
                ++PGI  K ASR+   + ++K
Sbjct: 11  IDSFMKLPGIGPKTASRLAFHVLDMK 36


>gi|330684677|gb|EGG96379.1| recombination protein RecR [Staphylococcus epidermidis VCU121]
          Length = 198

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 107 SKVIAQIPGISMKIASRIM---TELK 129
                ++PGI  K A R+     ++K
Sbjct: 11  IDSFMKLPGIGPKTAQRLAFHTLDMK 36


>gi|319948952|ref|ZP_08023057.1| excinuclease ABC subunit C [Dietzia cinnamea P4]
 gi|319437390|gb|EFV92405.1| excinuclease ABC subunit C [Dietzia cinnamea P4]
          Length = 709

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R    +L  V G+G      ++ +      + +  +++   +  +PGI   +A+ I+  L
Sbjct: 603 RMTASVLDDVPGLGPARRAALVEKFPTVSALRAASVED---LCTVPGIGPGVAASILATL 659

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
            G   S  +          +         +   + 
Sbjct: 660 -GSGGSADTGPGDATGSAGESATDTDPGDADGTDV 693


>gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
          Length = 698

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 70  QWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           + F  L  V+G G  ++  +     +   +  +    + + + Q+ GI  + A+ ++ EL
Sbjct: 515 RVFCAL-GVRGTGRSMSRRIARHFASMDRIAAA----DVEALQQVDGIGKEKAAAVVREL 569

Query: 129 K------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167
           +      GK ++ + V   +       +           +A S L
Sbjct: 570 QELAPLIGKLVA-AGVNMTEPGATPPPEPGAAQEGEAEESATSGL 613


>gi|159040904|ref|YP_001540156.1| DEAD/DEAH box helicase domain-containing protein [Caldivirga
           maquilingensis IC-167]
 gi|226740604|sp|A8MB76|HELS_CALMQ RecName: Full=Putative ski2-type helicase
 gi|157919739|gb|ABW01166.1| DEAD/DEAH box helicase domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 756

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 70  QWFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIM 125
           +   L+ +++GVG   A  + +    +  +L ++    N   + +I GI  KIA  I+
Sbjct: 667 ELLELVVNLEGVGRVRARALYAAGYRSIEDLAKA----NVSDLTRIRGIGDKIAGSII 720


>gi|145300090|ref|YP_001142931.1| DNA polymerase IV [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852862|gb|ABO91183.1| DNA polymerase IV [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 361

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 110 IAQIPGISMKIASRI 124
           +A++PGI  K A R+
Sbjct: 189 LAKLPGIGRKTAERL 203


>gi|66046625|ref|YP_236466.1| recombination protein RecR [Pseudomonas syringae pv. syringae
           B728a]
 gi|302188651|ref|ZP_07265324.1| recombination protein RecR [Pseudomonas syringae pv. syringae 642]
 gi|75501355|sp|Q4ZQZ4|RECR_PSEU2 RecName: Full=Recombination protein recR
 gi|63257332|gb|AAY38428.1| RecR protein [Pseudomonas syringae pv. syringae B728a]
 gi|330972503|gb|EGH72569.1| recombination protein RecR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 200

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
           +PG+  K A R+  +L  +  S  S + Q +        H  S  +    
Sbjct: 17  LPGVGQKTAQRMALQLLERDRSGGSRLAQALGQAMDGVGHCRSCRTLTEE 66


>gi|288919113|ref|ZP_06413452.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
 gi|288349457|gb|EFC83695.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
          Length = 715

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 27/182 (14%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD------------ 66
           +D+ G+ Y     +     +  IGD     +     +    L GF S             
Sbjct: 479 LDIDGLGYETATVLLAEGRIRDIGD-----IFHLAPESFEGLRGFASKKVDQILRGIEAA 533

Query: 67  LDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            DR  + LL   S++ VG   A  +   + + +   +I    ++ +A + G+  KIA  +
Sbjct: 534 RDRPLWRLLVGLSIRHVGPTAARALARELRSLD---AIAAAPAERLAAVDGVGPKIAEAV 590

Query: 125 M---TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           +    + + + +                      +    +     L   G+ +D AT AV
Sbjct: 591 VDWFADPRHRDVVARIAAGGARLADEGAGEGPGLLDGVVVVITGTLQ--GWSRDTATEAV 648

Query: 182 VS 183
            +
Sbjct: 649 QA 650


>gi|238544546|dbj|BAH60898.1| putative excinuclease ABC subunit C [Desulfotignum balticum]
          Length = 588

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 78  VQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125
           + GVG +    +L +      L  + + +    +  +PGI+ K+A +I+
Sbjct: 536 IPGVGPKRKKLLLQQFKGLENLKAASVDE----LTSLPGITEKLAEQIL 580


>gi|24641330|ref|NP_511125.2| no distributive disjunction [Drosophila melanogaster]
 gi|128497|sp|P18105|NOD_DROME RecName: Full=Kinesin-like protein Nod
 gi|157780|gb|AAA28653.1| kinesin-like protein (nod) [Drosophila melanogaster]
 gi|157974|gb|AAC14452.1| kinesin-like protein [Drosophila melanogaster]
 gi|15150427|gb|AAK84937.1| SD02282p [Drosophila melanogaster]
 gi|22833096|gb|AAF48064.2| no distributive disjunction [Drosophila melanogaster]
          Length = 666

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
            +  M   ++      ++ +   N K + +IPGI  K A
Sbjct: 591 PKAWMANNTKC----FLDLLNNGNVKQLQEIPGIGPKSA 625


>gi|113474139|ref|YP_720200.1| RNA-directed DNA polymerase [Trichodesmium erythraeum IMS101]
 gi|110165187|gb|ABG49727.1| RNA-directed DNA polymerase [Trichodesmium erythraeum IMS101]
          Length = 634

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 117 SMKIA-----------SRI-MTE-LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
             K A            R+ + E LK + +  S   +  +    +E+     +P+    A
Sbjct: 97  GKKTAGIDGIKSLPPMQRLNLVEMLKSQYLKASPTRRVWIPKPGREEKRPLGIPTMYDRA 156

Query: 164 ISALVNLG 171
           + ALV LG
Sbjct: 157 LQALVKLG 164


>gi|313123458|ref|YP_004033717.1| ATP-dependent DNA helicase, recd/traa family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280021|gb|ADQ60740.1| ATP-dependent DNA helicase, RecD/TraA family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 796

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 107 SKVIA--QIPGISMKIASRIM 125
            K ++  + PGI  K A +I+
Sbjct: 87  VKYLSSDKFPGIGPKTAEKIV 107


>gi|167838923|ref|ZP_02465700.1| PHP domain N-terminal region family protein [Burkholderia
           thailandensis MSMB43]
          Length = 616

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALHVETLEQLKGAAENGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPCVSEAVAA 188


>gi|104782578|ref|YP_609076.1| hypothetical protein PSEEN3550 [Pseudomonas entomophila L48]
 gi|95111565|emb|CAK16285.1| Hypothetical protein; putative leucine-rich repeat domain protein
           [Pseudomonas entomophila L48]
          Length = 1517

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 68  DRQ------WFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104
           +R+       F  L +V GVG + A+ +     A +L E++I 
Sbjct: 832 EREVEAPGGLFQALIAVLGVGGKQALELSGAAPAEQLREAVIA 874


>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
 gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
          Length = 392

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
            + +SL S    D        AH  S+     +AI  L  LG+ QDQA  A  +  K E+
Sbjct: 314 DQFLSLLSESGGDDDAPLPPGAHQISVTEEERDAIERLTRLGFTQDQAIQAYFACDKNEE 373

Query: 190 NIAD 193
             A+
Sbjct: 374 LAAN 377


>gi|116513849|ref|YP_812755.1| exonuclease V subunit alpha [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093164|gb|ABJ58317.1| ATP-dependent DNA helicase, RecD/TraA family [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 796

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 107 SKVIA--QIPGISMKIASRIM 125
            K ++  + PGI  K A +I+
Sbjct: 87  VKYLSSEKFPGIGPKTAEKIV 107


>gi|330992004|ref|ZP_08315953.1| hypothetical protein SXCC_01910 [Gluconacetobacter sp. SXCC-1]
 gi|329761025|gb|EGG77520.1| hypothetical protein SXCC_01910 [Gluconacetobacter sp. SXCC-1]
          Length = 451

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           ++G+G   A  ++      E V  +I Q    + ++ GI  K A RI+
Sbjct: 97  IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERIV 142



 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMKIASRI 124
           R+  + L S  GVG   A+ +        +   +I +N   +A+ I GI  K A +I
Sbjct: 152 REIMLFLHS-NGVGTSRAVRIFKTYGQDAVK--LISENPYRLAKDIRGIGFKTADQI 205


>gi|325684368|gb|EGD26537.1| exodeoxyribonuclease V alpha subunit [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 796

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 107 SKVIA--QIPGISMKIASRIM 125
            K ++  + PGI  K A +I+
Sbjct: 87  VKYLSSDKFPGIGPKTAEKIV 107


>gi|300933816|ref|ZP_07149072.1| recombination protein RecR [Corynebacterium resistens DSM 45100]
          Length = 218

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A RI   L
Sbjct: 13  FSRLPGIGPKSAQRIALHL 31


>gi|269793189|ref|YP_003318093.1| methyl-accepting chemotaxis sensory transducer [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100824|gb|ACZ19811.1| methyl-accepting chemotaxis sensory transducer [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 433

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 33/75 (44%)

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
             S+++  ++  +   +    I       +  +S L  + +  ++   A  SV ++ + +
Sbjct: 343 MESVAATSEEQAAASQEIAKSIDEAARSTVEVVSGLGVIQHSAEETAKAAESVAREAEKL 402

Query: 192 ADDSQIIRLALRAIS 206
              ++ ++ AL++ S
Sbjct: 403 TSGAEALKEALKSFS 417


>gi|126456341|ref|YP_001074654.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia pseudomallei 1106a]
 gi|242312600|ref|ZP_04811617.1| hypothetical protein BURPS1106B_1379 [Burkholderia pseudomallei
           1106b]
 gi|126230109|gb|ABN93522.1| hypothetical protein BURPS1106A_A0618 [Burkholderia pseudomallei
           1106a]
 gi|242135839|gb|EES22242.1| hypothetical protein BURPS1106B_1379 [Burkholderia pseudomallei
           1106b]
          Length = 740

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|325125506|gb|ADY84836.1| exodeoxyribonuclease V alpha chain [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 796

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 107 SKVIA--QIPGISMKIASRIM 125
            K ++  + PGI  K A +I+
Sbjct: 87  VKYLSSEKFPGIGPKTAEKIV 107


>gi|300311698|ref|YP_003775790.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
 gi|300074483|gb|ADJ63882.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQSVQGVGARVAMGV-- 89
              L  IG      V   +   +  L   L  L R +   F  L ++ G+G +    +  
Sbjct: 55  FPKLPGIGQDLEEKVREIIATGRCLL---LEALRRNFPPHFNDLLAIPGLGPKRVQRLNH 111

Query: 90  -LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
            L   +  +L E+ I    +    IPG   K    I+
Sbjct: 112 ALGISSIKQLREAAIAGKVRD---IPGFGPKTEQSIL 145


>gi|296139879|ref|YP_003647122.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Tsukamurella paurometabola DSM 20162]
 gi|296028013|gb|ADG78783.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Tsukamurella paurometabola DSM 20162]
          Length = 320

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 101 SIILQNSK-VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159
           +++  +    +  +PGI  K AS+++ +  G   ++     Q  S +    A      S 
Sbjct: 205 ALLRGDPSDGLPGVPGIGEKTASKLLLQ-YGSLAAIRDAAAQQPSPLPARAAASIVNSSD 263

Query: 160 AINA 163
            ++A
Sbjct: 264 YLDA 267


>gi|289596778|ref|YP_003483474.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289534565|gb|ADD08912.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 756

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASR 123
           S  +RQ ++ ++S+  V A+++  +L    +  +++ +        + Q+ GI  K A  
Sbjct: 686 STEERQRYI-IESLPNVSAKLSQRLLEHFGSVKDVINA----EVGELIQVKGIGRKTAEE 740

Query: 124 I 124
           I
Sbjct: 741 I 741


>gi|322417835|ref|YP_004197058.1| PHP domain-containing protein [Geobacter sp. M18]
 gi|320124222|gb|ADW11782.1| PHP domain protein [Geobacter sp. M18]
          Length = 576

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ-----WFMLLQSVQGVGA 83
               + L  +  +G      +E +++   +  +    +  +Q      F  L SV  +G 
Sbjct: 46  QMSHKELLEIPGVGADLAARIEEYLQTGTMAYY----EQLKQEVPAGVF-ALLSVPDLGP 100

Query: 84  RVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           + A  +   L   +  EL ++ +      +  I GI  K    I   LKG          
Sbjct: 101 KTAKAIYEALQVTSLEELEKAALEH---RLIGIKGIKEKTEENI---LKG---------- 144

Query: 141 QDMSCVNKEQAHICSMPSFAINAISAL 167
                  +E+  +  M   A   + AL
Sbjct: 145 IQAVKRGRERQPLGRMLPAAEELVEAL 171


>gi|104773842|ref|YP_618822.1| exodeoxyribonuclease V alpha chain [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422923|emb|CAI97585.1| Exodeoxyribonuclease V alpha chain [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 796

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 107 SKVIA--QIPGISMKIASRIM 125
            K ++  + PGI  K A +I+
Sbjct: 87  VKYLSSEKFPGIGPKTAEKIV 107


>gi|68537105|ref|YP_251810.1| recombination protein RecR [Corynebacterium jeikeium K411]
 gi|260579450|ref|ZP_05847331.1| recombination protein RecR [Corynebacterium jeikeium ATCC 43734]
 gi|123650055|sp|Q4JSL5|RECR_CORJK RecName: Full=Recombination protein recR
 gi|68264704|emb|CAI38192.1| recombination protein [Corynebacterium jeikeium K411]
 gi|258602420|gb|EEW15716.1| recombination protein RecR [Corynebacterium jeikeium ATCC 43734]
          Length = 250

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            +++PGI  K A RI   L
Sbjct: 13  FSRLPGIGPKSAQRIALHL 31


>gi|300811360|ref|ZP_07091857.1| helicase, RecD/TraA family [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497724|gb|EFK32749.1| helicase, RecD/TraA family [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 796

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 107 SKVIA--QIPGISMKIASRIM 125
            K ++  + PGI  K A +I+
Sbjct: 87  VKYLSSEKFPGIGPKTAEKIV 107


>gi|317052105|ref|YP_004113221.1| Zinc finger C4-type protein RecR [Desulfurispirillum indicum S5]
 gi|316947189|gb|ADU66665.1| Zinc finger C4-type, RecR [Desulfurispirillum indicum S5]
          Length = 208

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 110 IAQIPGISMKIASRIMTE 127
           +AQIPGI  K A R   E
Sbjct: 14  LAQIPGIGQKTAERFALE 31


>gi|312878615|ref|ZP_07738472.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794606|gb|EFR11078.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 276

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 116 EEDLERLDTIPGVGRRTAEHIIAE 139


>gi|306836196|ref|ZP_07469180.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49726]
 gi|304567917|gb|EFM43498.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49726]
          Length = 986

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
            Y++Y P   L+ L    +    ++   + ++   L+
Sbjct: 451 GYLVYIPQNFLNQLSSQPEQVNEYIVPAIEKNNQELY 487


>gi|256370923|ref|YP_003108747.1| recombination protein RecR [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007507|gb|ACU53074.1| recombination protein RecR [Acidimicrobium ferrooxidans DSM 10331]
          Length = 205

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + + ++PGI  K A RI   L
Sbjct: 12  IEELGRLPGIGPKSAQRIALAL 33


>gi|312878670|ref|ZP_07738509.1| transposase IS111A/IS1328/IS1533 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794553|gb|EFR11043.1| transposase IS111A/IS1328/IS1533 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 277

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 245 EEDMERLDTIPGVGRRTAEHIIAE 268


>gi|157816803|gb|ABV82393.1| RE24179p [Drosophila melanogaster]
 gi|254750759|gb|ACT80132.1| RE24835p [Drosophila melanogaster]
          Length = 153

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
            +  M   ++     L+  +   N K + +IPGI  K A
Sbjct: 78  PKAWMANNTKC----LLGHLNNGNVKQLQEIPGIGSKTA 112


>gi|220931411|ref|YP_002508319.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
 gi|219992721|gb|ACL69324.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
          Length = 573

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 73  MLLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           + +  + G+G + A  + + +      EL  ++    ++   ++ G  +K        LK
Sbjct: 94  LEIIKIPGLGPKRAYQLFNELGVTNLEELKSALNTGKAR---KLKGFGVKTEE----NLK 146

Query: 130 GKAISLSSV 138
            K     S 
Sbjct: 147 NKIEKYESF 155


>gi|254478007|ref|ZP_05091391.1| Transposase IS116/IS110/IS902 family protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214036011|gb|EEB76701.1| Transposase IS116/IS110/IS902 family protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 327

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 167 EEDLERLDTIPGVGRRTAEHIIAE 190


>gi|282865905|ref|ZP_06274954.1| helicase, RecD/TraA family [Streptomyces sp. ACTE]
 gi|282559229|gb|EFB64782.1| helicase, RecD/TraA family [Streptomyces sp. ACTE]
          Length = 751

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G  +A  + +      L   II Q+ K + ++PG+  K
Sbjct: 102 IKGIGPVMADRITTHFGVDTLD--IIEQHPKRLVEVPGLGPK 141


>gi|332975720|gb|EGK12604.1| competence protein ComEA [Desmospora sp. 8437]
          Length = 204

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             LQ + G+G   A  ++          S+       + ++PGI  K   ++
Sbjct: 151 EELQQLSGIGPSKAEAIIRHREENGPFTSVDQ-----LTEVPGIGEKTLDQL 197


>gi|254884038|ref|ZP_05256748.1| recombination protein recR [Bacteroides sp. 4_3_47FAA]
 gi|254836831|gb|EET17140.1| recombination protein recR [Bacteroides sp. 4_3_47FAA]
          Length = 206

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            A++PG+  K A R++  L
Sbjct: 18  FAKLPGVGRKTAMRLVLHL 36


>gi|300361475|ref|ZP_07057652.1| exodeoxyribonuclease V alpha subunit [Lactobacillus gasseri JV-V03]
 gi|300354094|gb|EFJ69965.1| exodeoxyribonuclease V alpha subunit [Lactobacillus gasseri JV-V03]
          Length = 792

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 107 SKVIA--QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
           +K ++  + PGI  K A RI+  L   A+ L      ++  ++  Q    S+ S    
Sbjct: 89  AKYLSSDKFPGIGKKAAERIIDSLGTNALDLIKANPTEIDDLDLTQKQKDSLLSGINQ 146


>gi|150005488|ref|YP_001300232.1| recombination protein RecR [Bacteroides vulgatus ATCC 8482]
 gi|237710673|ref|ZP_04541154.1| recombination protein recR [Bacteroides sp. 9_1_42FAA]
 gi|237727063|ref|ZP_04557544.1| recombination protein recR [Bacteroides sp. D4]
 gi|265750346|ref|ZP_06086409.1| recombination protein RecR [Bacteroides sp. 3_1_33FAA]
 gi|294778690|ref|ZP_06744109.1| recombination protein RecR [Bacteroides vulgatus PC510]
 gi|319640712|ref|ZP_07995426.1| recombination protein recR [Bacteroides sp. 3_1_40A]
 gi|166221923|sp|A6L4J6|RECR_BACV8 RecName: Full=Recombination protein recR
 gi|149933912|gb|ABR40610.1| recombination protein recR [Bacteroides vulgatus ATCC 8482]
 gi|229433919|gb|EEO43996.1| recombination protein recR [Bacteroides dorei 5_1_36/D4]
 gi|229455395|gb|EEO61116.1| recombination protein recR [Bacteroides sp. 9_1_42FAA]
 gi|263237242|gb|EEZ22692.1| recombination protein RecR [Bacteroides sp. 3_1_33FAA]
 gi|294447346|gb|EFG15927.1| recombination protein RecR [Bacteroides vulgatus PC510]
 gi|317387674|gb|EFV68539.1| recombination protein recR [Bacteroides sp. 3_1_40A]
          Length = 205

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            A++PG+  K A R++  L
Sbjct: 17  FAKLPGVGRKTAMRLVLHL 35


>gi|104780941|ref|YP_607439.1| recombination protein RecR [Pseudomonas entomophila L48]
 gi|122403933|sp|Q1ICI0|RECR_PSEE4 RecName: Full=Recombination protein recR
 gi|95109928|emb|CAK14633.1| recombination protein recR [Pseudomonas entomophila L48]
          Length = 200

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152
              +  +PG+  K A R+  +L  +  S  + + Q +S   +   H
Sbjct: 11  IDALRILPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMEGVGH 56


>gi|37650594|emb|CAD69018.1| ComEA protein [Bacillus megaterium]
          Length = 214

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+G   A  ++S      L +++       + Q+ GI  K   +I
Sbjct: 162 ELQTLNGIGPSKASAIVSYREENGLFQTVED-----LGQVSGIGEKSLEKI 207


>gi|323704752|ref|ZP_08116329.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535678|gb|EGB25452.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 419

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           GF +      F+ L SV G+G  +A G++S     E+       N   +A+  GI
Sbjct: 279 GFKNQ-----FLCLTSVNGIGPTIAAGLIS-----EIGGISRFDNDNALAKFSGI 323


>gi|304316180|ref|YP_003851325.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777682|gb|ADL68241.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 419

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           GF +      F+ L SV G+G  +A G++S     E+       N   +A+  GI
Sbjct: 279 GFKNQ-----FLCLTSVNGIGPTIAAGLIS-----EIGGISRFDNDNALAKFSGI 323


>gi|325981779|ref|YP_004294181.1| DNA-directed DNA polymerase [Nitrosomonas sp. AL212]
 gi|325531298|gb|ADZ26019.1| DNA-directed DNA polymerase [Nitrosomonas sp. AL212]
          Length = 384

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVA--MGVLSRITATELVES 101
           D + + G      R W + +  + G+G + A  + +L   T  EL  +
Sbjct: 180 DGLTIIGMSDIPQRIWPLSVHKINGIGPKAANKLALLGITTIAELARA 227


>gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
 gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
          Length = 664

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           +R  F L   +  VG + A  +  R    E +++II    + +  I GI  K+A  I+ 
Sbjct: 500 ERVLFALGIRL--VGQKAASLIAERF---ETMDAIIAATVEELTSIDGIGTKMAESIVL 553


>gi|167578728|ref|ZP_02371602.1| PHP domain N-terminal region family protein [Burkholderia
           thailandensis TXDOH]
          Length = 614

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   +      +L E+      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALRVETLEQLKEAAEKGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|167574903|ref|ZP_02367777.1| PHP domain N-terminal region family protein [Burkholderia
           oklahomensis C6786]
          Length = 680

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 16/103 (15%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L E+      + +   PG   K     A  I  
Sbjct: 159 ELLGVPGLGAKRVRALHDALHVETLEQLKEAAESGKIRGL---PGFGEKTEAHIAEAIGA 215

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
            L+ K+          +S   +    + +          ALV 
Sbjct: 216 RLRRKSQRF------LLSFATQYLTPLLTYLRETPGVSEALVA 252


>gi|220928256|ref|YP_002505165.1| excinuclease ABC subunit C [Clostridium cellulolyticum H10]
 gi|254764928|sp|B8I8F2|UVRC_CLOCE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219998584|gb|ACL75185.1| excinuclease ABC, C subunit [Clostridium cellulolyticum H10]
          Length = 613

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y +   +  L  + +I D           +   +L        R     L  ++G+G   
Sbjct: 522 YELATNMPLLRFITEIQDE----THRVAVEYNRKL-----REKRYVRSELDEIEGIGQTR 572

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
              ++    +   V +I   +   + ++ GIS KIA  I
Sbjct: 573 KKALIKHFKS---VAAIRKADIAQLQEVNGISEKIAKNI 608


>gi|83716502|ref|YP_440157.1| phosphotransferase domain-containing protein [Burkholderia
           thailandensis E264]
 gi|167616864|ref|ZP_02385495.1| PHP domain N-terminal region family protein [Burkholderia
           thailandensis Bt4]
 gi|257140786|ref|ZP_05589048.1| phosphotransferase domain-containing protein [Burkholderia
           thailandensis E264]
 gi|83650327|gb|ABC34391.1| PHP domain N-terminal region family [Burkholderia thailandensis
           E264]
          Length = 614

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   +      +L E+      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALRVETLEQLKEAAEKGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|226196621|ref|ZP_03792202.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|225931497|gb|EEH27503.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei Pakistan 9]
          Length = 646

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|217424656|ref|ZP_03456154.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 576]
 gi|217392580|gb|EEC32604.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 576]
          Length = 640

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|53721489|ref|YP_110474.1| phosphoesterase [Burkholderia pseudomallei K96243]
 gi|52211903|emb|CAH37908.1| putative phosphoesterase [Burkholderia pseudomallei K96243]
          Length = 646

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|27382581|ref|NP_774110.1| excinuclease ABC subunit C [Bradyrhizobium japonicum USDA 110]
 gi|81734657|sp|Q89DG9|UVRC_BRAJA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|27355753|dbj|BAC52735.1| excinuclease ABC chain C [Bradyrhizobium japonicum USDA 110]
          Length = 686

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81
           ++ P R    L +  D    F+   +R +  R   F+    R+          LQ + G+
Sbjct: 583 LFMPEREAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 637

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           G      +L       L E I   +   + ++PG+S + A RI
Sbjct: 638 GPSRKRALLHHFGT--LKE-IERASIADLGKVPGVSAESARRI 677


>gi|114562713|ref|YP_750226.1| recombination protein RecR [Shewanella frigidimarina NCIMB 400]
 gi|122300117|sp|Q084C7|RECR_SHEFN RecName: Full=Recombination protein recR
 gi|114334006|gb|ABI71388.1| recombination protein RecR [Shewanella frigidimarina NCIMB 400]
          Length = 199

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL++         +  +PG+  K A R+  +L  +   +   +   +     E  H  
Sbjct: 7   VDELIQ--------SLRALPGVGPKSAQRMAFQLLERERKVGLKLADSLQKAMSEVGHCQ 58

Query: 155 SMPSFAINAI 164
           S  +F    +
Sbjct: 59  SCRTFTEQDL 68


>gi|254187261|ref|ZP_04893775.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934943|gb|EDO90613.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 654

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|76817244|ref|YP_337156.1| DNA polymerase X family/PHP domain-containing protein [Burkholderia
           pseudomallei 1710b]
 gi|254262450|ref|ZP_04953315.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 1710a]
 gi|76581717|gb|ABA51191.1| DNA polymerase X family/PHP domain protein [Burkholderia
           pseudomallei 1710b]
 gi|254213452|gb|EET02837.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 1710a]
          Length = 650

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|254185379|ref|ZP_04891967.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 1655]
 gi|184209614|gb|EDU06657.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 1655]
          Length = 650

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|315127276|ref|YP_004069279.1| competence protein [Pseudoalteromonas sp. SM9913]
 gi|315015790|gb|ADT69128.1| competence protein [Pseudoalteromonas sp. SM9913]
          Length = 97

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 102 IILQNSKVIAQIPGISMKIASRIM 125
           I   + K + ++PG+  K A  I+
Sbjct: 39  INTADLKQLIKLPGVGKKKAQAII 62


>gi|295706662|ref|YP_003599737.1| ComE operon protein [Bacillus megaterium DSM 319]
 gi|294804321|gb|ADF41387.1| ComE operon protein [Bacillus megaterium DSM 319]
          Length = 211

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+G   A  ++S      L +++       + Q+ GI  K   +I
Sbjct: 159 ELQTLNGIGPSKASAIVSYREENGLFQTVED-----LGQVSGIGEKSLEKI 204


>gi|86738985|ref|YP_479385.1| recombination protein RecR [Frankia sp. CcI3]
 gi|123751565|sp|Q2JGD6|RECR_FRASC RecName: Full=Recombination protein recR
 gi|86565847|gb|ABD09656.1| DNA replication and repair protein RecR [Frankia sp. CcI3]
          Length = 199

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128
           I+      + ++PGI  K A RI   L
Sbjct: 5   IVQDLIDELGRLPGIGPKSAQRIAFHL 31


>gi|212212866|ref|YP_002303802.1| recombination protein RecR [Coxiella burnetii CbuG_Q212]
 gi|212011276|gb|ACJ18657.1| recombination protein [Coxiella burnetii CbuG_Q212]
          Length = 201

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 18/56 (32%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
            + +  +PGI  K A R+   L  K+     +   D       Q   C +      
Sbjct: 10  IEALQCLPGIGPKSAQRMAFHLLAKSGQAKGLALSDALQSAIRQVGECKLCQIYTE 65


>gi|260886383|ref|ZP_05897646.1| competence protein [Selenomonas sputigena ATCC 35185]
 gi|330838849|ref|YP_004413429.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Selenomonas sputigena ATCC 35185]
 gi|260863904|gb|EEX78404.1| competence protein [Selenomonas sputigena ATCC 35185]
 gi|329746613|gb|AEB99969.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Selenomonas sputigena ATCC 35185]
          Length = 198

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIM 125
              +V  I   + K + ++PGI   +A RI+
Sbjct: 134 PEGMVN-INTADEKELDKLPGIGPAMAKRII 163


>gi|320010734|gb|ADW05584.1| helicase, RecD/TraA family [Streptomyces flavogriseus ATCC 33331]
          Length = 743

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G  +A  + +      L   II Q+ K + ++PG+  K
Sbjct: 94  IKGIGPVMADRITTHFGVDTLD--IIEQHPKRLVEVPGLGPK 133


>gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
 gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
          Length = 662

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 62/216 (28%)

Query: 3   GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
             ++G  + + E  V           GV   IYC   TL C  ++       V    R+ 
Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443

Query: 57  QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100
            + + GF      Q F  L                  +   G + A  +L          
Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494

Query: 101 SIILQNSKVIAQ------IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
           +I       +        IP + +K A     +L  +  SL ++       +   Q    
Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAK----DLVKRFESLENLENATFEELVSVQDVGD 550

Query: 155 SMPSFAIN---------AISALVNLG----YGQDQA 177
            +    I           I+ L++LG    Y + + 
Sbjct: 551 IVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586


>gi|254198905|ref|ZP_04905323.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei S13]
 gi|169657077|gb|EDS88471.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei S13]
          Length = 648

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|167905529|ref|ZP_02492734.1| DNA polymerase X family/PHP domain protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 658

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|147678282|ref|YP_001212497.1| DNA polymerase IV, histidinol phosphatase and related hydrolases
           [Pelotomaculum thermopropionicum SI]
 gi|146274379|dbj|BAF60128.1| DNA polymerase IV, histidinol phosphatase and related hydrolases
           [Pelotomaculum thermopropionicum SI]
          Length = 567

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 24/115 (20%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI--------- 120
           + + S+ G+G + A  +   L   +  EL  +      + +   PG+  K          
Sbjct: 91  LEIMSLPGIGPKRAGLIYRKLGVASLEELARAAREGRVRSL---PGMGSKTESDIIRNIE 147

Query: 121 -----ASRIMT----ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
                A R++     EL G+      ++                     I+ + A
Sbjct: 148 MREDRAGRVLLATARELAGELAGFLKILPGVSRVEAGGSLRRWQETVGDIDLVVA 202


>gi|254296742|ref|ZP_04964196.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 406e]
 gi|157806601|gb|EDO83771.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 406e]
          Length = 640

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|126444286|ref|YP_001061709.1| DNA polymerase X family protein [Burkholderia pseudomallei 668]
 gi|126223777|gb|ABN87282.1| DNA polymerase X family protein [Burkholderia pseudomallei 668]
          Length = 642

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
 gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
          Length = 921

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 14/50 (28%)

Query: 80  GVGARVAMGVLSRITATEL--VESIILQNSKVIAQIPGISMKIASRIMTE 127
           GVG +            +L  V +++  +   +  +PG+  K AS+++ E
Sbjct: 170 GVGPK------------QLGDVLALMGDSVDNVPGVPGVGPKTASKLIVE 207


>gi|289643262|ref|ZP_06475387.1| recombination protein RecR [Frankia symbiont of Datisca glomerata]
 gi|289506902|gb|EFD27876.1| recombination protein RecR [Frankia symbiont of Datisca glomerata]
          Length = 200

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128
           I+      + ++PGI  K A RI   L
Sbjct: 7   IVQDLIDELGRLPGIGPKSAQRIAFHL 33


>gi|224373470|ref|YP_002607842.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
           AmH]
 gi|223589333|gb|ACM93069.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
           AmH]
          Length = 546

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 38/159 (23%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM-----LLQSVQGVGARVAMGV 89
           L+ L  IG   + +++  +   +     F    + Q  +      L S++G+G +    +
Sbjct: 55  LTKLPGIGHDLSEYIKEIVNTGK-----FHKLEELQKEIPKGVVELLSIEGLGPKRVKQL 109

Query: 90  LSRI---TATELVESIILQNSKVIAQIPGISMKIASRIM--------------------- 125
                     +L +         + ++PG   K+  +I+                     
Sbjct: 110 YETFGIKNMDDLKKYAYSGE---LDKLPGFGPKLIEKILKGVKQLKKAGIRFLWAEVEDT 166

Query: 126 -TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163
             ELK   +    V   D++   + +          + A
Sbjct: 167 ANELKDYLLEFEGVETVDIAGSFRRKKESVGDLDILVIA 205


>gi|167741515|ref|ZP_02414289.1| phosphoesterase [Burkholderia pseudomallei 14]
          Length = 646

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|167623526|ref|YP_001673820.1| recombination protein RecR [Shewanella halifaxensis HAW-EB4]
 gi|189029374|sp|B0TP04|RECR_SHEHH RecName: Full=Recombination protein recR
 gi|167353548|gb|ABZ76161.1| recombination protein RecR [Shewanella halifaxensis HAW-EB4]
          Length = 199

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 95  ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154
             EL++         +  +PG+  K A R+  +L  +     + +   ++    +  H  
Sbjct: 7   VDELIQ--------SLRCLPGVGPKSAQRMAFQLLERDRKAGAKLADSLAKAMSDVGHCQ 58

Query: 155 SMPSFAIN 162
           S  +F   
Sbjct: 59  SCRTFTEE 66


>gi|111220097|ref|YP_710891.1| recombination protein RecR [Frankia alni ACN14a]
 gi|122954652|sp|Q0RT19|RECR_FRAAA RecName: Full=Recombination protein recR
 gi|111147629|emb|CAJ59284.1| recombination and repair protein [Frankia alni ACN14a]
          Length = 199

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128
           I+      + ++PGI  K A RI   L
Sbjct: 5   IVQDLIDELGRLPGIGPKSAQRIAFHL 31


>gi|76799924|ref|ZP_00781928.1| competence protein CelA [Streptococcus agalactiae 18RS21]
 gi|76584724|gb|EAO61478.1| competence protein CelA [Streptococcus agalactiae 18RS21]
          Length = 94

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ++ GVGA+ A  +L    +    ++I       +  + GI  K   ++
Sbjct: 43  LQTISGVGAKRAQDILDYRDSQGGFKTIDD-----LKNVSGIGEKTLEKL 87


>gi|237507761|ref|ZP_04520476.1| DNA polymerase X family protein [Burkholderia pseudomallei MSHR346]
 gi|234999966|gb|EEP49390.1| DNA polymerase X family protein [Burkholderia pseudomallei MSHR346]
          Length = 638

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   +      +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|167913839|ref|ZP_02500930.1| DNA polymerase X family/PHP domain protein [Burkholderia
           pseudomallei 112]
          Length = 650

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   +      +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|167897154|ref|ZP_02484556.1| DNA polymerase X family protein [Burkholderia pseudomallei 7894]
 gi|167921751|ref|ZP_02508842.1| DNA polymerase X family protein [Burkholderia pseudomallei BCC215]
          Length = 642

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   +      +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|167818707|ref|ZP_02450387.1| phosphoesterase [Burkholderia pseudomallei 91]
          Length = 648

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   +      +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|134282990|ref|ZP_01769692.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 305]
 gi|134245638|gb|EBA45730.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia
           pseudomallei 305]
          Length = 640

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   +      +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|120598525|ref|YP_963099.1| recombination protein RecR [Shewanella sp. W3-18-1]
 gi|146293396|ref|YP_001183820.1| recombination protein RecR [Shewanella putrefaciens CN-32]
 gi|166221965|sp|A4Y7T8|RECR_SHEPC RecName: Full=Recombination protein recR
 gi|166221967|sp|A1RIQ0|RECR_SHESW RecName: Full=Recombination protein recR
 gi|120558618|gb|ABM24545.1| DNA replication and repair protein RecR [Shewanella sp. W3-18-1]
 gi|145565086|gb|ABP76021.1| recombination protein RecR [Shewanella putrefaciens CN-32]
 gi|319426699|gb|ADV54773.1| recombination protein RecR [Shewanella putrefaciens 200]
          Length = 199

 Score = 35.4 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 22/58 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            + +  +PG+  K A R+  +L  +       +   +S    +  H  S  ++    +
Sbjct: 11  IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDVGHCQSCRTYTEETL 68


>gi|315639715|ref|ZP_07894854.1| exodeoxyribonuclease V alpha subunit [Enterococcus italicus DSM
           15952]
 gi|315484492|gb|EFU74949.1| exodeoxyribonuclease V alpha subunit [Enterococcus italicus DSM
           15952]
          Length = 824

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 112 QIPGISMKIASRIMTELKGKAIS 134
           + PGI  K A  I+  L   AI 
Sbjct: 97  KFPGIGKKTAETIVNALGDDAIE 119


>gi|126174785|ref|YP_001050934.1| recombination protein RecR [Shewanella baltica OS155]
 gi|166221962|sp|A3D5Q2|RECR_SHEB5 RecName: Full=Recombination protein recR
 gi|125997990|gb|ABN62065.1| recombination protein RecR [Shewanella baltica OS155]
          Length = 199

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 22/58 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            + +  +PG+  K A R+  +L  +       +   +S    +  H  S  ++    +
Sbjct: 11  IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDVGHCQSCRTYTEETL 68


>gi|29653995|ref|NP_819687.1| recombination protein RecR [Coxiella burnetii RSA 493]
 gi|153209000|ref|ZP_01947194.1| recombination protein RecR [Coxiella burnetii 'MSU Goat Q177']
 gi|154706620|ref|YP_001424073.1| recombination protein RecR [Coxiella burnetii Dugway 5J108-111]
 gi|161831096|ref|YP_001596583.1| recombination protein RecR [Coxiella burnetii RSA 331]
 gi|165920274|ref|ZP_02219546.1| recombination protein RecR [Coxiella burnetii RSA 334]
 gi|212219111|ref|YP_002305898.1| recombination protein RecR [Coxiella burnetii CbuK_Q154]
 gi|73621482|sp|Q83DP0|RECR_COXBU RecName: Full=Recombination protein recR
 gi|29541258|gb|AAO90201.1| recombination protein [Coxiella burnetii RSA 493]
 gi|120575537|gb|EAX32161.1| recombination protein RecR [Coxiella burnetii 'MSU Goat Q177']
 gi|154355906|gb|ABS77368.1| recombination protein [Coxiella burnetii Dugway 5J108-111]
 gi|161762963|gb|ABX78605.1| recombination protein RecR [Coxiella burnetii RSA 331]
 gi|165916830|gb|EDR35434.1| recombination protein RecR [Coxiella burnetii RSA 334]
 gi|212013373|gb|ACJ20753.1| recombination protein [Coxiella burnetii CbuK_Q154]
          Length = 201

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 18/56 (32%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162
            + +  +PGI  K A R+   L  K+     +   D       Q   C +      
Sbjct: 10  IEALQCLPGIGPKSAQRMAFHLLAKSGQAKGLALSDALQSAIRQVGECKLCQIYTE 65


>gi|75908470|ref|YP_322766.1| recombination protein RecR [Anabaena variabilis ATCC 29413]
 gi|123609556|sp|Q3MAW5|RECR_ANAVT RecName: Full=Recombination protein recR
 gi|75702195|gb|ABA21871.1| DNA replication and repair protein RecR [Anabaena variabilis ATCC
           29413]
          Length = 185

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 111 AQIPGISMKIASRIMT 126
            ++PG+  K A R+  
Sbjct: 2   QRLPGVGPKTAQRLAL 17


>gi|312136000|ref|YP_004003338.1| tn7-like transposition protein c [Caldicellulosiruptor owensensis
           OL]
 gi|311776051|gb|ADQ05538.1| Tn7-like transposition protein C [Caldicellulosiruptor owensensis
           OL]
          Length = 553

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207
           S    AI  L+ L     +A  AV  V++ E   ++ S+++  A++ +S 
Sbjct: 448 SVKEQAIIKLLELNIEAKKAQKAVEQVIEAEGEKSNVSELVVKAIQLLSS 497


>gi|229824042|ref|ZP_04450111.1| hypothetical protein GCWU000282_01346 [Catonella morbi ATCC 51271]
 gi|229786396|gb|EEP22510.1| hypothetical protein GCWU000282_01346 [Catonella morbi ATCC 51271]
          Length = 222

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           DQ  L+   +  + Q         G G++ A  ++S  +A+    +I   +   +  +PG
Sbjct: 120 DQQSLYV-PTIEEWQAESQGPQANGTGSQAA--IVSSPSASSGKVNINQADLSQLETLPG 176

Query: 116 ISMKIASRIM 125
           I  K A  I+
Sbjct: 177 IGAKKAQAII 186


>gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286]
 gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 851

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
           SV  VG   A  +L    +   VE+++  +   +  + G+    A R
Sbjct: 797 SVAEVGPVTARALLEHFGS---VEAVMTADEDELMDVDGVGEVTAER 840


>gi|322412122|gb|EFY03030.1| putative competence protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 220

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 73  MLLQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
             LQ + G+G + A  +L    +         L +   + Q+ GI  K   ++  EL
Sbjct: 167 EELQRISGIGVKRAQDILETRDSLGGFKT---LDD---LRQVSGIGEKTLEKLKHEL 217


>gi|325283369|ref|YP_004255910.1| Recombination protein recR [Deinococcus proteolyticus MRP]
 gi|324315178|gb|ADY26293.1| Recombination protein recR [Deinococcus proteolyticus MRP]
          Length = 198

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            + ++++PGI  K A R+   L
Sbjct: 11  IRELSRLPGIGPKSAQRLAFHL 32


>gi|293374917|ref|ZP_06621215.1| recombination protein RecR [Turicibacter sanguinis PC909]
 gi|325844363|ref|ZP_08168118.1| recombination protein RecR [Turicibacter sp. HGF1]
 gi|292646466|gb|EFF64478.1| recombination protein RecR [Turicibacter sanguinis PC909]
 gi|325489168|gb|EGC91551.1| recombination protein RecR [Turicibacter sp. HGF1]
          Length = 200

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + ++++PGI  K A R+
Sbjct: 11  IESLSKLPGIGNKTAERL 28


>gi|222480840|ref|YP_002567077.1| Ribosomal protein L32e [Halorubrum lacusprofundi ATCC 49239]
 gi|222453742|gb|ACM58007.1| Ribosomal protein L32e [Halorubrum lacusprofundi ATCC 49239]
          Length = 236

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 71  WFMLLQSVQGVGARVA--MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
               L+ + GVG   A  +      T  ++  +   +    ++Q+ G+   +A+RI
Sbjct: 1   MAEELEDISGVGPSKADPLRAAGYETVEDVKAASQSE----LSQVDGVGNALAARI 52


>gi|302390829|ref|YP_003826649.1| DNA replication and repair protein RecR [Acetohalobium arabaticum
           DSM 5501]
 gi|302202906|gb|ADL11584.1| DNA replication and repair protein RecR [Acetohalobium arabaticum
           DSM 5501]
          Length = 201

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 107 SKVIAQIPGISMKIASRI 124
              + ++PGI  K A R+
Sbjct: 12  IGKLTKLPGIGPKSAQRL 29


>gi|294501315|ref|YP_003565015.1| ComE operon protein [Bacillus megaterium QM B1551]
 gi|294351252|gb|ADE71581.1| ComE operon protein [Bacillus megaterium QM B1551]
          Length = 211

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
            LQ++ G+G   A  ++S      L +++       + Q+ GI  K   +I
Sbjct: 159 ELQTLNGIGPSKASAIVSYREENGLFQTVED-----LGQVSGIGEKSLEKI 204


>gi|251782856|ref|YP_002997159.1| putative competence protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391486|dbj|BAH81945.1| putative competence protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 220

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 73  MLLQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
             LQ + G+G + A  +L    +         L +   + Q+ GI  K   ++  EL
Sbjct: 167 EELQRISGIGVKRAQDILETRDSLGGFKT---LDD---LRQVSGIGEKTLEKLKHEL 217


>gi|153001130|ref|YP_001366811.1| recombination protein RecR [Shewanella baltica OS185]
 gi|160875800|ref|YP_001555116.1| recombination protein RecR [Shewanella baltica OS195]
 gi|217972948|ref|YP_002357699.1| recombination protein RecR [Shewanella baltica OS223]
 gi|304409213|ref|ZP_07390834.1| recombination protein RecR [Shewanella baltica OS183]
 gi|307303216|ref|ZP_07582971.1| recombination protein RecR [Shewanella baltica BA175]
 gi|166221963|sp|A6WPK9|RECR_SHEB8 RecName: Full=Recombination protein recR
 gi|189029373|sp|A9L594|RECR_SHEB9 RecName: Full=Recombination protein recR
 gi|254790782|sp|B8E703|RECR_SHEB2 RecName: Full=Recombination protein recR
 gi|151365748|gb|ABS08748.1| recombination protein RecR [Shewanella baltica OS185]
 gi|160861322|gb|ABX49856.1| recombination protein RecR [Shewanella baltica OS195]
 gi|217498083|gb|ACK46276.1| recombination protein RecR [Shewanella baltica OS223]
 gi|304353034|gb|EFM17431.1| recombination protein RecR [Shewanella baltica OS183]
 gi|306913576|gb|EFN43998.1| recombination protein RecR [Shewanella baltica BA175]
 gi|315267990|gb|ADT94843.1| recombination protein RecR [Shewanella baltica OS678]
          Length = 199

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 22/58 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            + +  +PG+  K A R+  +L  +       +   +S    +  H  S  ++    +
Sbjct: 11  IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDVGHCQSCRTYTEETL 68


>gi|310826416|ref|YP_003958773.1| recombination protein RecR [Eubacterium limosum KIST612]
 gi|308738150|gb|ADO35810.1| recombination protein RecR [Eubacterium limosum KIST612]
          Length = 199

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 107 SKVIAQIPGISMKIASRIMTELKG 130
              + ++PGI  K A R+   L  
Sbjct: 12  VTELGKLPGIGEKTAQRLAFHLID 35


>gi|182438618|ref|YP_001826337.1| putative exodeoxyribonuclease V [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326779267|ref|ZP_08238532.1| helicase, RecD/TraA family [Streptomyces cf. griseus XylebKG-1]
 gi|178467134|dbj|BAG21654.1| putative exodeoxyribonuclease V [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326659600|gb|EGE44446.1| helicase, RecD/TraA family [Streptomyces cf. griseus XylebKG-1]
          Length = 741

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++G+G  +A  + +      L   II +  K + ++PG+  K
Sbjct: 94  IKGIGPVMADRITTHFGVDTLD--IIEREPKRLVEVPGLGPK 133


>gi|282852795|ref|ZP_06262137.1| RuvA, C-terminal domain protein [Lactobacillus gasseri 224-1]
 gi|282556537|gb|EFB62157.1| RuvA, C-terminal domain protein [Lactobacillus gasseri 224-1]
          Length = 43

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + ALV LGY Q +       + K  +N AD    I+ AL  +
Sbjct: 1   MLALVALGYTQKEVDRITPKLAKLPENTADG--YIKEALALL 40


>gi|212694992|ref|ZP_03303120.1| hypothetical protein BACDOR_04529 [Bacteroides dorei DSM 17855]
 gi|212662445|gb|EEB23019.1| hypothetical protein BACDOR_04529 [Bacteroides dorei DSM 17855]
          Length = 198

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 110 IAQIPGISMKIASRIMTEL 128
            A++PG+  K A R++  L
Sbjct: 10  FAKLPGVGRKTAMRLVLHL 28


>gi|217967981|ref|YP_002353487.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217337080|gb|ACK42873.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 580

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 65  SDLDRQWFM--LLQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGI 116
            D++R  F    L  ++G+G  +   +   +T        EL + I  +    + +IPGI
Sbjct: 42  EDIER-LFKQGKLYQIKGIGESIGQKIKEYLTTGKVSYLEELRKEIPPE-ILELLKIPGI 99

Query: 117 SMKIASRIMTEL 128
             K+A R+  EL
Sbjct: 100 GPKLAYRLYAEL 111


>gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 13/54 (24%)

Query: 83  ARVAMGVLSRITATELVE------------SIILQNSK-VIAQIPGISMKIASR 123
            +  +  LSR+T   +              + ++ ++   +  +PG+  K A++
Sbjct: 154 PKKGVSELSRMTPEAVEAKYGVSPTHYPELAALVGDTSDNLTGVPGVGPKTAAK 207


>gi|294010026|ref|YP_003543486.1| DNA polymerase III delta subunit [Sphingobium japonicum UT26S]
 gi|292673356|dbj|BAI94874.1| DNA polymerase III delta subunit [Sphingobium japonicum UT26S]
          Length = 345

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 121 ASRIMTE---LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI  +   L+     L+          ++    +  M   ++ A++AL+       +A
Sbjct: 51  AERIDLDPSTLRDDPARLADEAASFSMFGDRRWIRVTGMGEESVPALNALL-------EA 103

Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202
             A   V+     +   S++++LAL
Sbjct: 104 EAAGNPVIAVAGALKGTSKLLKLAL 128


>gi|167722536|ref|ZP_02405772.1| DNA polymerase X family protein [Burkholderia pseudomallei DM98]
          Length = 600

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|167565137|ref|ZP_02358053.1| PHP domain N-terminal region family protein [Burkholderia
           oklahomensis EO147]
          Length = 643

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 16/103 (15%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L E+      + +   PG   K     A  I  
Sbjct: 122 ELLGVPGLGAKRVRALHDALHVETLEQLKEAAESGKIRGL---PGFGEKTEAHIAEAIGA 178

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169
            L+ K+          +S   +    + +          ALV 
Sbjct: 179 RLRRKSQRF------LLSFATQYLTPLLTYLRETPGVSEALVA 215


>gi|20088979|ref|NP_615054.1| hypothetical protein MA0080 [Methanosarcina acetivorans C2A]
 gi|19913829|gb|AAM03534.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 707

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 75  LQSVQGVGARVAMGVLSRITATELV-ESIILQNSKVIAQIPGI 116
           LQ + G+G RVA  ++    + E   ++I+  +   ++++ G+
Sbjct: 10  LQELNGIGERVACRLVEHFGSEEAALQAILEGDIASLSEVNGV 52


>gi|323127660|gb|ADX24957.1| putative competence protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 220

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 73  MLLQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
             LQ + G+G + A  +L    +         L +   + Q+ GI  K   ++  EL
Sbjct: 167 EELQRISGIGVKRAQDILETRDSLGGFKT---LDD---LRQVSGIGEKTLEKLKHEL 217


>gi|225016312|ref|ZP_03705504.1| hypothetical protein CLOSTMETH_00215 [Clostridium methylpentosum
           DSM 5476]
 gi|224950917|gb|EEG32126.1| hypothetical protein CLOSTMETH_00215 [Clostridium methylpentosum
           DSM 5476]
          Length = 151

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQN-SKVIAQIPGISMKIASRIM 125
           +  L  + G+G   A  +LS        + I   +  + + Q+ GI  K   +++
Sbjct: 97  YEQLVLINGIGDTKANAILS------FRDQIGQFDSLEQLQQVKGIGEKTYQKLI 145


>gi|87199082|ref|YP_496339.1| excinuclease ABC subunit C [Novosphingobium aromaticivorans DSM
           12444]
 gi|119367680|sp|Q2G9G8|UVRC_NOVAD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|87134763|gb|ABD25505.1| Excinuclease ABC subunit C [Novosphingobium aromaticivorans DSM
           12444]
          Length = 658

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  + G+G      +L        V +  L++   + + PG+S  +A  I
Sbjct: 604 LDEIPGIGPARKRALLLHFGTAGKVRAASLED---LQRAPGVSAAVAQTI 650


>gi|20807407|ref|NP_622578.1| DNA uptake protein and related DNA-binding proteins
           [Thermoanaerobacter tengcongensis MB4]
 gi|20515928|gb|AAM24182.1| DNA uptake protein and related DNA-binding proteins
           [Thermoanaerobacter tengcongensis MB4]
          Length = 196

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
             +  V   G +V     S I   + V  I     + +  +PGI    A RI+
Sbjct: 109 EQMIKVPKKGEKVDTSFASGIDGAKKVN-INTATKEELQTLPGIGPVTAERII 160


>gi|307297020|ref|ZP_07576836.1| DNA polymerase III, delta subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306877546|gb|EFN08774.1| DNA polymerase III, delta subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 345

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 121 ASRIMTE---LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI  +   L+     L+          +K    I  M   ++ A++AL+       +A
Sbjct: 51  AERIDLDGPTLRDDPARLADEAAAFSMFGDKRWIRINGMGEESLPALTALL-------EA 103

Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202
             A   V+     +   S++++LAL
Sbjct: 104 EAAGNPVIAVAGALKPTSKLLKLAL 128


>gi|322391100|ref|ZP_08064597.1| cobalt ABC superfamily ATP binding cassette transporter, ABC
           protein [Streptococcus parasanguinis ATCC 903]
 gi|321142200|gb|EFX37681.1| cobalt ABC superfamily ATP binding cassette transporter, ABC
           protein [Streptococcus parasanguinis ATCC 903]
          Length = 277

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            +++   + K   L S  +Q+++ V +             +   AL NLGY +++    V
Sbjct: 68  QQLI---QDKKKDLFS-YRQEVNMVFQNPEQQLFYTIAKDDIGMALENLGYSKEECEKRV 123

Query: 182 VSVLKKEKNIADDSQI 197
              +     + D  ++
Sbjct: 124 QEAI----ELMDIEEL 135


>gi|283778801|ref|YP_003369556.1| PHP domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283437254|gb|ADB15696.1| PHP domain protein [Pirellula staleyi DSM 6068]
          Length = 578

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           L  + GVG + A  +   L   +  EL  +      + +    G + K   +++ 
Sbjct: 95  LLRIPGVGPKKAAALYKELGVKSLEELKSACEQGKVREL---KGFAAKT-EQLIL 145


>gi|147679038|ref|YP_001213253.1| transposase and inactivated derivatives [Pelotomaculum
           thermopropionicum SI]
 gi|146275135|dbj|BAF60884.1| transposase and inactivated derivatives [Pelotomaculum
           thermopropionicum SI]
          Length = 405

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++  ++  IPG+  + A +I+ E
Sbjct: 245 EEDLGLLDTIPGVGRRTAEQILAE 268


>gi|119476223|ref|ZP_01616574.1| recombination protein RecR [marine gamma proteobacterium HTCC2143]
 gi|119450087|gb|EAW31322.1| recombination protein RecR [marine gamma proteobacterium HTCC2143]
          Length = 199

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 107 SKVIAQIPGISMKIASRIMTEL--KGKAISLSSVVQQDMS 144
            + +  +PG+  K A R+   L  + +   L    Q D +
Sbjct: 11  VEALRCLPGVGPKSAQRMAFHLLERDREGGLKLAEQLDTA 50


>gi|306821329|ref|ZP_07454938.1| recombination protein R [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550616|gb|EFM38598.1| recombination protein R [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 200

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 107 SKVIAQIPGISMKIASRI 124
            + ++++PGI  K A R+
Sbjct: 12  IRQLSKLPGIGQKTAQRL 29


>gi|326388848|ref|ZP_08210430.1| excinuclease ABC subunit C [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206448|gb|EGD57283.1| excinuclease ABC subunit C [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 671

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L  + G+G      +L        V +  L++   + + PG+S  +A  I
Sbjct: 619 LDEIPGIGPARKRALLLHFGTAGKVRAASLED---LQRAPGVSAAVAQTI 665


>gi|119897250|ref|YP_932463.1| recombination protein RecR [Azoarcus sp. BH72]
 gi|171704428|sp|A1K421|RECR_AZOSB RecName: Full=Recombination protein recR
 gi|119669663|emb|CAL93576.1| recombination protein RecR [Azoarcus sp. BH72]
          Length = 199

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 22/58 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
              +  +PG+  K A R+   L  +    ++ +   +    +   H     +F+  A+
Sbjct: 12  IAALRCLPGVGPKSAQRMAYHLLQRDQRGAARLAGALGHALEVLRHCQRCNNFSEEAV 69


>gi|298492185|ref|YP_003722362.1| recombination protein RecR ['Nostoc azollae' 0708]
 gi|298234103|gb|ADI65239.1| recombination protein RecR ['Nostoc azollae' 0708]
          Length = 189

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 2   IEQLQRLPGVGPKSAQRLAL 21


>gi|159030384|emb|CAO91280.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 203

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 6/40 (15%)

Query: 87  MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            G+ +  T   L   I       + ++PG+  K A R+  
Sbjct: 3   RGLTAIYTPP-LARLIEQ-----LQKLPGVGPKSAQRLAL 36


>gi|323352667|ref|ZP_08087637.1| M20/M25/M40 family peptidase [Streptococcus sanguinis VMC66]
 gi|322121703|gb|EFX93449.1| M20/M25/M40 family peptidase [Streptococcus sanguinis VMC66]
          Length = 445

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179
           A + + +LK +     ++  +     N   A          + ++ L  LGY  +  A  
Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241

Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207
             V+ + K  K+ A   + IIRLA  L+ +  
Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQPLDS 273


>gi|288553661|ref|YP_003425596.1| hypothetical protein BpOF4_03190 [Bacillus pseudofirmus OF4]
 gi|288544821|gb|ADC48704.1| hypothetical protein BpOF4_03190 [Bacillus pseudofirmus OF4]
          Length = 571

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           L  VQG+G +    +   L  + A  L ++   +  + +A   G   K   +I+  L
Sbjct: 90  LLKVQGLGGKKIGKLYQELGVVDAATLKQACEDKKVQALA---GFGKKTEEKILVAL 143


>gi|219856583|ref|YP_002473705.1| hypothetical protein CKR_3240 [Clostridium kluyveri NBRC 12016]
 gi|219570307|dbj|BAH08291.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 753

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           + G+G   A  ++ +     L   I+  N + + +I GI  K
Sbjct: 91  ISGIGPVTAKKIVEKFGKDTLH--ILDNNIERLKEIEGIGSK 130


>gi|91773310|ref|YP_566002.1| DNA mismatch repair protein MutS-like protein [Methanococcoides
           burtonii DSM 6242]
 gi|91712325|gb|ABE52252.1| MutS domain protein [Methanococcoides burtonii DSM 6242]
          Length = 700

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 75  LQSVQGVGARVAMGVLSRITATELV-ESIILQNSKVIAQIPGISMKIASRIMTELK 129
           LQ +  +G ++A          +   ++I+  +   I+++ G+  + A  ++ E++
Sbjct: 4   LQDIPRIGEKMAKRFQEHFGGEDRAMDAILSGDIASISEVEGVGQRYAISLVHEVR 59


>gi|146298126|ref|YP_001192717.1| recombination protein RecR [Flavobacterium johnsoniae UW101]
 gi|189029362|sp|A5FN24|RECR_FLAJO RecName: Full=Recombination protein recR
 gi|146152544|gb|ABQ03398.1| recombination protein RecR [Flavobacterium johnsoniae UW101]
          Length = 206

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           E    +I +    ++Q+PGI  + A R++  L
Sbjct: 2   EFSSKLIEKAVNEMSQLPGIGKRTALRLVLHL 33


>gi|220932457|ref|YP_002509365.1| excinuclease ABC, C subunit [Halothermothrix orenii H 168]
 gi|219993767|gb|ACL70370.1| excinuclease ABC, C subunit [Halothermothrix orenii H 168]
          Length = 607

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           R    +L  + GVG +    +LS   +     +I       + ++ GIS K A R++ +
Sbjct: 545 RLTHTMLDEIPGVGPKRRKALLSHFGSLG---AIRKATIGQLKEVDGISNKTA-RVIYD 599


>gi|254445015|ref|ZP_05058491.1| hypothetical protein VDG1235_3258 [Verrucomicrobiae bacterium
           DG1235]
 gi|198259323|gb|EDY83631.1| hypothetical protein VDG1235_3258 [Verrucomicrobiae bacterium
           DG1235]
          Length = 154

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L ++ G+G   A  +L++      VE I   + + + ++PG     A  ++
Sbjct: 5   LITIAGIGPSAA-AILAKNGYA-CVEDIAKSDVETLCEVPGFGPVRAENVI 53


>gi|119774745|ref|YP_927485.1| excinuclease ABC subunit C [Shewanella amazonensis SB2B]
 gi|119767245|gb|ABL99815.1| Excinuclease ABC subunit C [Shewanella amazonensis SB2B]
          Length = 606

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 74  LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            L+S+ G+G +    +L  +    ++  + + +    +A++PGIS ++A  I   L+G
Sbjct: 553 TLESIPGIGPKRRKALLQYLGGLQQVKNASVAE----LAKVPGISAEMAQTIHDALRG 606


>gi|255994735|ref|ZP_05427870.1| helicase, RecD/TraA family [Eubacterium saphenum ATCC 49989]
 gi|255993448|gb|EEU03537.1| helicase, RecD/TraA family [Eubacterium saphenum ATCC 49989]
          Length = 741

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 65  SDLDRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
              + +   +L S  ++GVG + A  ++       L   II  + K + ++ GIS K+A 
Sbjct: 80  EKNEDEIRAVLLSGIIKGVGEKRADIIIEAFGEKTLD--IIENDYKKLEKLGGISKKLAK 137

Query: 123 RI 124
            I
Sbjct: 138 EI 139


>gi|254482872|ref|ZP_05096109.1| endonuclease III [marine gamma proteobacterium HTCC2148]
 gi|214036953|gb|EEB77623.1| endonuclease III [marine gamma proteobacterium HTCC2148]
          Length = 217

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 73  MLLQSVQGVGARVAMGV--LSRITATELVESIILQNSKVIAQIPGISMKIA 121
            L+    G+  + +  +  LS I   E  ++++  + + + ++PG+  K A
Sbjct: 74  RLIIRPCGLSPQKSKAIKRLSEILLDE-HDAVVPADMEALERLPGVGHKTA 123


>gi|153956266|ref|YP_001397031.1| exodeoxyribonuclease [Clostridium kluyveri DSM 555]
 gi|146349124|gb|EDK35660.1| Predicted exodeoxyribonuclease [Clostridium kluyveri DSM 555]
          Length = 750

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           + G+G   A  ++ +     L   I+  N + + +I GI  K
Sbjct: 88  ISGIGPVTAKKIVEKFGKDTLH--ILDNNIERLKEIEGIGSK 127


>gi|92118613|ref|YP_578342.1| excinuclease ABC subunit C [Nitrobacter hamburgensis X14]
 gi|119367677|sp|Q1QIR5|UVRC_NITHX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91801507|gb|ABE63882.1| Excinuclease ABC subunit C [Nitrobacter hamburgensis X14]
          Length = 690

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81
           ++ P R    L +  D    F+   +R +  R   F+    R+          LQ V G+
Sbjct: 587 LFLPDRPAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRRKDIREAGLQEVPGI 641

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           G      +L       L E I   +   + ++PGIS + A +I
Sbjct: 642 GPARKRALLHHFGT--LKE-IERASVADLGKVPGISAESARKI 681


>gi|221324008|ref|ZP_03605302.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. subtilis str. SMY]
          Length = 205

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             LQ + GVG   A  +++        ++I       I ++ GI  K   +I
Sbjct: 152 EELQGISGVGPSKAEAIIAYREENGRFQTIED-----ITKVSGIGEKSFEKI 198


>gi|167718020|ref|ZP_02401256.1| tetratricopeptide repeat protein [Burkholderia pseudomallei DM98]
          Length = 579

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 83  PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 136

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 137 QPMLSQELARATGENRGQAII--ALQAL 162


>gi|78221351|ref|YP_383098.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78192606|gb|ABB30373.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 431

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 18/110 (16%)

Query: 24  VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGFLS----DLDRQWFMLLQS 77
           V Y  + P+ T + L  + G    +     +     +R +GF +    D +     L   
Sbjct: 252 VYYSAFIPVNTDTRLPSVVGTPPLVREHRLYQADWLMRYYGFAAGELLDEEHPNLDLSLD 311

Query: 78  VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
                 +   A+  L           +     +++ ++PGI ++ A RI+
Sbjct: 312 -----PKAGWALRNLHLFPVE-----VNRAPLELLLRVPGIGVRSAQRIV 351


>gi|91975761|ref|YP_568420.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisB5]
 gi|119367826|sp|Q13BM0|UVRC_RHOPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91682217|gb|ABE38519.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisB5]
          Length = 695

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 28  IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81
           ++ P R    L +  D    F+   +R +  R   F+    R+          LQ + G+
Sbjct: 592 LFMPEREAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 646

Query: 82  GARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           G      +L    T  E+  +  + +   + ++PGIS + A RI
Sbjct: 647 GPTRKRALLHHFGTLKEIERA-SIGD---LGKVPGISAESARRI 686


>gi|332971117|gb|EGK10084.1| recombination protein R [Psychrobacter sp. 1501(2011)]
          Length = 195

 Score = 35.0 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            K +  +PG+  K A R+   L
Sbjct: 10  VKQLRVLPGVGQKTAQRMALHL 31


>gi|332670249|ref|YP_004453257.1| DNA polymerase III subunit alpha [Cellulomonas fimi ATCC 484]
 gi|332339287|gb|AEE45870.1| DNA polymerase III, alpha subunit [Cellulomonas fimi ATCC 484]
          Length = 1192

 Score = 35.0 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 18/117 (15%)

Query: 79   QGVGARVAMGVLSRITATELVE-SIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
             G G  VA+GV +   A      ++ L     +A +  +   +A R++ E +        
Sbjct: 938  SGTGPAVAVGVRTGTDAPVPRSLAVRLG----LASVRSVGEDVAQRLVDERR-------- 985

Query: 138  VVQQDMSCVNKEQAHICSMPSFAINAIS---ALVNLGYGQDQATTAVVSVLKKEKNI 191
                      ++      + +  + A++   AL +LG  + +A  A  ++ ++  + 
Sbjct: 986  --AHGPFADLRDLVRRVRLSTAQLEALATAGALDSLGGTRREALWAAGALAQEGPDT 1040


>gi|116668972|ref|YP_829905.1| levanase [Arthrobacter sp. FB24]
 gi|116609081|gb|ABK01805.1| Levanase [Arthrobacter sp. FB24]
          Length = 1267

 Score = 35.0 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            +  IPG+  ++A   +TEL G   S        ++  +       S  SF + A  A
Sbjct: 852 SLKDIPGVGPRLAQEPITELAGLRTSTWQASDVTVTPTSANPLSAASGRSFELEAEVA 909


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score = 35.0 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 25  CYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFGFLSDLDR--QWFMLLQSVQGV 81
            Y     I TL+C  + +G   T+       +D ++L G    ++        L  V+GV
Sbjct: 116 GYEADDIIATLACQARDLGGRVTII---SSDKDLMQLVG--DGVEMLDAMKNRLIDVEGV 170

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
             +  +     +     V+++   +   +   PGI +K A+ ++ E
Sbjct: 171 REKFGVSPDRVVD----VQALAGDSVDNVPGAPGIGIKTAALLINE 212


>gi|329767200|ref|ZP_08258727.1| hypothetical protein HMPREF0428_00424 [Gemella haemolysans M341]
 gi|328836867|gb|EGF86514.1| hypothetical protein HMPREF0428_00424 [Gemella haemolysans M341]
          Length = 209

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 15/63 (23%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV---IAQIPGISMKIASRIMTELK 129
             L  + GVG   A  ++S              + K    I ++ GI      +I    K
Sbjct: 157 EQLMKISGVGKTKAEAIISYREK--------NGDFKKKEDITKVKGIGKATFEKI----K 204

Query: 130 GKA 132
            K 
Sbjct: 205 DKI 207


>gi|297198890|ref|ZP_06916287.1| excinuclease ABC, C subunit [Streptomyces sviceus ATCC 29083]
 gi|297147230|gb|EDY55222.2| excinuclease ABC, C subunit [Streptomyces sviceus ATCC 29083]
          Length = 684

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L ++ D    F  T+ R              R  F    L  V G+G      +L  
Sbjct: 557 LYLLQRVRDEAHRFAITYQRT---------KRAQR--FRSSPLDDVPGLGDTRKQALLKH 605

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRI 124
             +  +L  + I Q    I ++PGI  K A  I
Sbjct: 606 FGSLKKLRSATIDQ----ICEVPGIGRKTAETI 634


>gi|238855203|ref|ZP_04645522.1| conserved virulence factor B [Lactobacillus jensenii 269-3]
 gi|260664566|ref|ZP_05865418.1| RNA-binding protein [Lactobacillus jensenii SJ-7A-US]
 gi|282932503|ref|ZP_06337928.1| conserved virulence factor B [Lactobacillus jensenii 208-1]
 gi|313471968|ref|ZP_07812460.1| S1 RNA binding domain protein [Lactobacillus jensenii 1153]
 gi|238832095|gb|EEQ24413.1| conserved virulence factor B [Lactobacillus jensenii 269-3]
 gi|260561631|gb|EEX27603.1| RNA-binding protein [Lactobacillus jensenii SJ-7A-US]
 gi|281303452|gb|EFA95629.1| conserved virulence factor B [Lactobacillus jensenii 208-1]
 gi|313449039|gb|EFR61307.1| S1 RNA binding domain protein [Lactobacillus jensenii 1153]
          Length = 292

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  MIGKI-KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50
          M+G I KG +    ++   + V GV Y +     T   + ++GD    F+ 
Sbjct: 1  MLGTIQKGKVIDKNDEAYYVQVDGVTYELNKLEVTQEQMPQLGDIVQGFIY 51


>gi|167909465|ref|ZP_02496556.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 112]
          Length = 581

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 85  PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 138

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 139 QPMLSQELARATGENRGQAII--ALQAL 164


>gi|167901247|ref|ZP_02488452.1| tetratricopeptide repeat protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 526

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 30  PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 83

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 84  QPMLSQELARATGENRGQAII--ALQAL 109


>gi|117920887|ref|YP_870079.1| recombination protein RecR [Shewanella sp. ANA-3]
 gi|166221966|sp|A0KY04|RECR_SHESA RecName: Full=Recombination protein recR
 gi|117613219|gb|ABK48673.1| DNA replication and repair protein RecR [Shewanella sp. ANA-3]
          Length = 199

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 23/58 (39%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            + +  +PG+  K A R+  +L  +       +   +S    +  H  S  ++   ++
Sbjct: 11  IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDIGHCQSCRTYTEESL 68


>gi|315282388|ref|ZP_07870810.1| ComE operon protein 1 [Listeria marthii FSL S4-120]
 gi|313613970|gb|EFR87692.1| ComE operon protein 1 [Listeria marthii FSL S4-120]
          Length = 200

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I   +   +  + GI  K   ++
Sbjct: 149 LQQVPGIGDSKATAIIEYREKEGLFQTI--GD---LKNVSGIGEKTVEKL 193


>gi|53718164|ref|YP_107150.1| hypothetical protein BPSL0525 [Burkholderia pseudomallei K96243]
 gi|53724081|ref|YP_104601.1| TPR domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|76810361|ref|YP_332170.1| hypothetical protein BURPS1710b_0757 [Burkholderia pseudomallei
           1710b]
 gi|121600080|ref|YP_991436.1| TPR domain-containing protein [Burkholderia mallei SAVP1]
 gi|124385353|ref|YP_001027488.1| TPR domain-containing protein [Burkholderia mallei NCTC 10229]
 gi|126439979|ref|YP_001057625.1| TPR repeat-containing protein [Burkholderia pseudomallei 668]
 gi|126448388|ref|YP_001082454.1| TPR domain-containing protein [Burkholderia mallei NCTC 10247]
 gi|126452823|ref|YP_001064871.1| TPR repeat-containing protein [Burkholderia pseudomallei 1106a]
 gi|134279447|ref|ZP_01766159.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 305]
 gi|237810775|ref|YP_002895226.1| TPR domain protein [Burkholderia pseudomallei MSHR346]
 gi|238561327|ref|ZP_00442181.2| TPR domain protein [Burkholderia mallei GB8 horse 4]
 gi|242314624|ref|ZP_04813640.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1106b]
 gi|251767334|ref|ZP_04820068.1| tetratricopeptide repeat protein [Burkholderia mallei PRL-20]
 gi|254174735|ref|ZP_04881396.1| TPR domain protein [Burkholderia mallei ATCC 10399]
 gi|254181863|ref|ZP_04888460.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1655]
 gi|254207022|ref|ZP_04913373.1| tetratricopeptide repeat protein [Burkholderia mallei JHU]
 gi|254258660|ref|ZP_04949714.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1710a]
 gi|254357501|ref|ZP_04973775.1| tetratricopeptide repeat protein [Burkholderia mallei 2002721280]
 gi|52208578|emb|CAH34514.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|52427504|gb|AAU48097.1| TPR domain protein [Burkholderia mallei ATCC 23344]
 gi|76579814|gb|ABA49289.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|121228890|gb|ABM51408.1| TPR domain protein [Burkholderia mallei SAVP1]
 gi|124293373|gb|ABN02642.1| TPR domain protein [Burkholderia mallei NCTC 10229]
 gi|126219472|gb|ABN82978.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 668]
 gi|126226465|gb|ABN90005.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1106a]
 gi|126241258|gb|ABO04351.1| TPR domain protein [Burkholderia mallei NCTC 10247]
 gi|134248647|gb|EBA48729.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 305]
 gi|147752564|gb|EDK59630.1| tetratricopeptide repeat protein [Burkholderia mallei JHU]
 gi|148026565|gb|EDK84650.1| tetratricopeptide repeat protein [Burkholderia mallei 2002721280]
 gi|160695780|gb|EDP85750.1| TPR domain protein [Burkholderia mallei ATCC 10399]
 gi|184212401|gb|EDU09444.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1655]
 gi|237504659|gb|ACQ96977.1| TPR domain protein [Burkholderia pseudomallei MSHR346]
 gi|238524787|gb|EEP88218.1| TPR domain protein [Burkholderia mallei GB8 horse 4]
 gi|242137863|gb|EES24265.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1106b]
 gi|243063113|gb|EES45299.1| tetratricopeptide repeat protein [Burkholderia mallei PRL-20]
 gi|254217349|gb|EET06733.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1710a]
          Length = 606

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 163

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 164 QPMLSQELARATGENRGQAII--ALQAL 189


>gi|87306911|ref|ZP_01089057.1| transcriptional regulator [Blastopirellula marina DSM 3645]
 gi|87290284|gb|EAQ82172.1| transcriptional regulator [Blastopirellula marina DSM 3645]
          Length = 216

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  +L+ K +S   +  +    +        S  +    AI AL   G  + +   A
Sbjct: 13  AQRIFLDLRSKILS-GDIESETRLTLRPLANEYESGINAVSEAIKALAAEGLVKLE-GQA 70

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
              V+ ++        I+R+A
Sbjct: 71  GARVIARDLKQIRGEYILRIA 91


>gi|257454438|ref|ZP_05619700.1| recombination protein RecR [Enhydrobacter aerosaccus SK60]
 gi|257448204|gb|EEV23185.1| recombination protein RecR [Enhydrobacter aerosaccus SK60]
          Length = 202

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 107 SKVIAQIPGISMKIASRIMTEL 128
            K +  +PG+  K A R+   L
Sbjct: 10  VKQLKVLPGVGPKSAQRMALHL 31


>gi|167737036|ref|ZP_02409810.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 14]
 gi|167822669|ref|ZP_02454140.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 9]
 gi|167917494|ref|ZP_02504585.1| tetratricopeptide repeat protein [Burkholderia pseudomallei BCC215]
          Length = 602

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 106 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 159

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 160 QPMLSQELARATGENRGQAII--ALQAL 185


>gi|217419730|ref|ZP_03451236.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 576]
 gi|226199577|ref|ZP_03795134.1| tetratricopeptide repeat protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254187796|ref|ZP_04894308.1| tetratricopeptide repeat protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254296086|ref|ZP_04963543.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 406e]
 gi|157805914|gb|EDO83084.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 406e]
 gi|157935476|gb|EDO91146.1| tetratricopeptide repeat protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|217397034|gb|EEC37050.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 576]
 gi|225928458|gb|EEH24488.1| tetratricopeptide repeat protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 606

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 163

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 164 QPMLSQELARATGENRGQAII--ALQAL 189


>gi|167814145|ref|ZP_02445825.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 91]
 gi|167844241|ref|ZP_02469749.1| tetratricopeptide repeat protein [Burkholderia pseudomallei B7210]
 gi|254196773|ref|ZP_04903197.1| tetratricopeptide repeat protein [Burkholderia pseudomallei S13]
 gi|169653516|gb|EDS86209.1| tetratricopeptide repeat protein [Burkholderia pseudomallei S13]
          Length = 602

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            ++A R  TE     I+L++    D                 A    +AL+ LG    +A
Sbjct: 106 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 159

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   L +         II  AL+A+
Sbjct: 160 QPMLSQELARATGENRGQAII--ALQAL 185


>gi|39934692|ref|NP_946968.1| hypothetical protein RPA1622 [Rhodopseudomonas palustris CGA009]
 gi|39648542|emb|CAE27063.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 426

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 93  ITATELVESIILQNSKVIAQIPGISMKI--ASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150
           ++  +L         K  +Q   I  K    +R+  EL  K  ++ ++  ++ +   + Q
Sbjct: 69  MSVDQLKN-------KTTSQFAEIGKKTDAINRLKLELTEKIAAIETLEAREKALQEQLQ 121

Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTA-VVSVLKKEKNIADDSQI 197
               +  +      SA   L   + QA  A + + L +   +AD  Q+
Sbjct: 122 TTEQNFAARTEELRSAEAAL--AEKQAELARINAELNERSTLADTRQV 167


>gi|16079613|ref|NP_390437.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221310484|ref|ZP_03592331.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221314808|ref|ZP_03596613.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221319730|ref|ZP_03601024.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|321312044|ref|YP_004204331.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis BSn5]
 gi|729154|sp|P39694|COMEA_BACSU RecName: Full=ComE operon protein 1
 gi|289260|gb|AAC36905.1| comE ORF1 [Bacillus subtilis]
 gi|1303796|dbj|BAA12452.1| ComEA [Bacillus subtilis]
 gi|2635005|emb|CAB14501.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|320018318|gb|ADV93304.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis BSn5]
          Length = 205

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             LQ + GVG   A  +++        ++I       I ++ GI  K   +I
Sbjct: 152 EELQGISGVGPSKAEAIIAYREENGRFQTIED-----ITKVSGIGEKSFEKI 198


>gi|312878707|ref|ZP_07738530.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794516|gb|EFR11022.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 242

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 82  EEDMERLDTIPGVGRRTAEHIIAE 105


>gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
 gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
          Length = 684

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS----- 122
           +R  F L   ++ VG + A  +         +++++  + + +  +P I  K+A      
Sbjct: 513 ERLLFGL--GIRHVGEKAAKTLAEHFGT---IDALMSASEEELMAVPDIGPKVAQSIRQY 567

Query: 123 -------RIMTELKGKAISLSSVVQQDMS 144
                  +++ ELK   ++++ +  Q +S
Sbjct: 568 FDTPRVRQLIQELKDLGVNMTYLGPQKVS 596


>gi|146282185|ref|YP_001172338.1| recombination protein RecR [Pseudomonas stutzeri A1501]
 gi|166221957|sp|A4VKJ5|RECR_PSEU5 RecName: Full=Recombination protein recR
 gi|145570390|gb|ABP79496.1| recombination protein RecR [Pseudomonas stutzeri A1501]
          Length = 199

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 107 SKVIAQIPGISMKIASRIMTEL--KGKAISL 135
              +  +PG+  K A R+  +L  + ++  L
Sbjct: 11  IDALRILPGVGQKTAQRMALQLLERDRSGGL 41


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 25  CYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL-QSVQGVG 82
            Y     I TLSC   + G   T+       +D ++L G            L   V+GV 
Sbjct: 118 GYEADDIIATLSCQAREAGGRVTII---SSDKDLMQLVG-GGVEMLDAMKNLRIDVEGVE 173

Query: 83  ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           A+  +G    +     V+++   +   +   PGI +K A+ ++ E
Sbjct: 174 AKFGVGPDRVVD----VQALAGDSVDNVPGAPGIGIKTAALLINE 214


>gi|189499727|ref|YP_001959197.1| helicase, RecD/TraA family [Chlorobium phaeobacteroides BS1]
 gi|189495168|gb|ACE03716.1| helicase, RecD/TraA family [Chlorobium phaeobacteroides BS1]
          Length = 728

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           V+GVG   A  ++      E V SII +  + +  +PGI  K    I+
Sbjct: 100 VKGVGQHFAKELVRAFG--EEVFSIIEKEPETLLTLPGIGKKRMEMIV 145


>gi|157693060|ref|YP_001487522.1| competence protein EA [Bacillus pumilus SAFR-032]
 gi|157681818|gb|ABV62962.1| competence protein EA [Bacillus pumilus SAFR-032]
          Length = 209

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
            LQ++ G+G   A  +++ R    E  +    ++   +  I G   K   R+  EL
Sbjct: 157 ELQTINGIGPAKAEAIITYREEHGEFQQI---ED---LRNISGFGEKTIERLKNEL 206


>gi|294628736|ref|ZP_06707296.1| excinuclease ABC, C subunit [Streptomyces sp. e14]
 gi|292832069|gb|EFF90418.1| excinuclease ABC, C subunit [Streptomyces sp. e14]
          Length = 697

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L +I D    F  T+ R          +   ++ F    L  V G+G      ++  
Sbjct: 572 LYLLQRIRDEAHRFAITYQR----------TKRAKR-FRAGPLDEVPGLGETRKRALIKH 620

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRI 124
             +   L  + I Q    I ++PGI +K A  I
Sbjct: 621 FGSVKRLRSATIDQ----IREVPGIGLKTAETI 649


>gi|291485009|dbj|BAI86084.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. natto BEST195]
          Length = 205

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             LQ + GVG   A  +++        ++I       I ++ GI  K   +I
Sbjct: 152 EELQGISGVGPSKAEAIIAYREENGRFQTIED-----ITKVSGIGEKSFEKI 198


>gi|166367420|ref|YP_001659693.1| recombination protein RecR [Microcystis aeruginosa NIES-843]
 gi|166089793|dbj|BAG04501.1| recombination protein [Microcystis aeruginosa NIES-843]
          Length = 188

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 2   IEQLQKLPGVGPKSAQRLAL 21


>gi|311742584|ref|ZP_07716393.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM
           15272]
 gi|311314212|gb|EFQ84120.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM
           15272]
          Length = 648

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125
           L  V G+G      ++ +  +   L  + + +    +AQ+PGI    A  I+
Sbjct: 579 LDDVAGLGPTRRKALMRQFGSLKRLRAATVEE----VAQVPGIGPATAQSIV 626


>gi|209364102|ref|YP_001424875.2| COME operon protein 1 [Coxiella burnetii Dugway 5J108-111]
 gi|212212970|ref|YP_002303906.1| COME operon protein 1 [Coxiella burnetii CbuG_Q212]
 gi|212218843|ref|YP_002305630.1| COME operon protein 1 [Coxiella burnetii CbuK_Q154]
 gi|215918990|ref|NP_819564.2| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii RSA 493]
 gi|206583875|gb|AAO90078.2| COME operon protein 1 [Coxiella burnetii RSA 493]
 gi|207082035|gb|ABS77203.2| COME operon protein 1 [Coxiella burnetii Dugway 5J108-111]
 gi|212011380|gb|ACJ18761.1| COME operon protein 1 [Coxiella burnetii CbuG_Q212]
 gi|212013105|gb|ACJ20485.1| COME operon protein 1 [Coxiella burnetii CbuK_Q154]
          Length = 123

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           LL +++G+G + A  +++        +SI       ++ +PGIS K  +R++
Sbjct: 66  LLTTLKGIGVKKAKAIIAYRKKEGNFKSIE-----ALSSVPGISQKTVARLI 112


>gi|113970587|ref|YP_734380.1| recombination protein RecR [Shewanella sp. MR-4]
 gi|114047818|ref|YP_738368.1| recombination protein RecR [Shewanella sp. MR-7]
 gi|123130341|sp|Q0HHZ4|RECR_SHESM RecName: Full=Recombination protein recR
 gi|123326453|sp|Q0HU94|RECR_SHESR RecName: Full=Recombination protein recR
 gi|113885271|gb|ABI39323.1| DNA replication and repair protein RecR [Shewanella sp. MR-4]
 gi|113889260|gb|ABI43311.1| DNA replication and repair protein RecR [Shewanella sp. MR-7]
          Length = 199

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 23/58 (39%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            + +  +PG+  K A R+  +L  +       +   +S    +  H  S  ++   ++
Sbjct: 11  IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDIGHCQSCRTYTEESL 68


>gi|327401381|ref|YP_004342220.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6]
 gi|327316889|gb|AEA47505.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6]
          Length = 210

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124
           +L ++ G+G   A  +L +  +   +V + I +    + ++ GI  K A RI
Sbjct: 153 MLTAIPGIGVEKAKRLLEKFGSVYRVVNATIPE----LMRVEGIGEKQAKRI 200


>gi|321272286|gb|ADW80171.1| tail tape measure [Wolbachia endosymbiont wVitA of Nasonia
           vitripennis phage WOVitA1]
          Length = 806

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 17/131 (12%)

Query: 81  VGARVAMGVLSR---ITATELVESIILQN-SKVIAQIPGISMKIA--SR---IMTELKGK 131
           +G    +  +S    ++A E        +    +A I GI  K+A   R   I+  L   
Sbjct: 252 IGFTTTVAKMSTAFDMSAEE------AGDSIAKLANIYGI--KVADMERAGNIINHLSDN 303

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
           + + +  + + ++ V               + ++A ++LG    +A TA+ ++L K +  
Sbjct: 304 SAAKAGDMVKALAVVGGSAKQFGLDIKETSSLVNAFISLGKQPAKAATAINALLSKLQTA 363

Query: 192 ADDSQIIRLAL 202
               +  + AL
Sbjct: 364 EGQGKEFKAAL 374


>gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
 gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
          Length = 858

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +G   A  +L    +   VE+++  N + + ++ G+    A RI
Sbjct: 809 IGPVTARTLLEAFGS---VEAVMTANEEDLKEVRGVGQVTAERI 849


>gi|239940412|ref|ZP_04692349.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998]
 gi|239986893|ref|ZP_04707557.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 11379]
 gi|291443843|ref|ZP_06583233.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998]
 gi|291346790|gb|EFE73694.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998]
          Length = 686

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
           L  V G+G      ++    +  +L ++ I +    I ++PGI  + A 
Sbjct: 610 LDDVSGLGETRKQALIKHFGSVKKLRQATIDE----ICEVPGIGRRTAE 654


>gi|257069943|ref|YP_003156198.1| DNA replication and repair protein RecR [Brachybacterium faecium
           DSM 4810]
 gi|256560761|gb|ACU86608.1| DNA replication and repair protein RecR [Brachybacterium faecium
           DSM 4810]
          Length = 197

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKG 130
           I+      + ++PGI  K A RI   L  
Sbjct: 5   IVQDLIDELGRLPGIGPKSAQRIAFHLLD 33


>gi|186684245|ref|YP_001867441.1| recombination protein RecR [Nostoc punctiforme PCC 73102]
 gi|186466697|gb|ACC82498.1| recombination protein RecR [Nostoc punctiforme PCC 73102]
          Length = 247

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 107 SKVIAQIPGISMKIASRIMT 126
            + + ++PG+  K A R+  
Sbjct: 60  IEQLQRLPGVGPKSAQRLAL 79


>gi|327480434|gb|AEA83744.1| recombination protein RecR [Pseudomonas stutzeri DSM 4166]
          Length = 199

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 107 SKVIAQIPGISMKIASRIMTEL--KGKAISL 135
              +  +PG+  K A R+  +L  + ++  L
Sbjct: 11  IDALRILPGVGQKTAQRMALQLLERDRSGGL 41


>gi|312878652|ref|ZP_07738499.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794572|gb|EFR11054.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 243

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127
            ++ + +  IPG+  + A  I+ E
Sbjct: 83  EEDMERLDTIPGVGRRTAEHIIAE 106


>gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
 gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
          Length = 670

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 25/140 (17%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA---------- 121
           F+    ++ VG   A  + +     +   ++I   S+ + ++P +   +A          
Sbjct: 512 FIYALGIREVGEATANALANHFKNLD---ALIAAESEQLQEVPDVGAVVAKHIVAFFHEA 568

Query: 122 --SRIMTELKGKA----ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
              +++ EL+          +S VQ D    N               A SAL  LG    
Sbjct: 569 HNQQVVAELREFISWPEGEEASSVQSDRLSGNTYVITGTLSTMTRDEAKSALEALG---- 624

Query: 176 QATTAVVSVLKKEKNIADDS 195
                  SV KK   +    
Sbjct: 625 --AKVASSVSKKTTALVAGE 642


>gi|325119489|emb|CBZ55042.1| putative nucleoporin FG repeat-containing protein [Neospora caninum
           Liverpool]
          Length = 410

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 96  TELVESIILQNSKVIAQIPGI--SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153
             L E I+    + + Q  G+     +A R+  E    A   S    +     N      
Sbjct: 289 PGLAEQIVTSQLQQLQQFHGLVREKAVAERLAFE----APPPSVDFLRPFLAANSLSLQS 344

Query: 154 CSMPSFAINAISALVNLG 171
             + +  ++A+ AL +LG
Sbjct: 345 APVVAPQLDAVQALSSLG 362


>gi|330815904|ref|YP_004359609.1| hypothetical protein bgla_1g09710 [Burkholderia gladioli BSR3]
 gi|327368297|gb|AEA59653.1| hypothetical protein bgla_1g09710 [Burkholderia gladioli BSR3]
          Length = 111

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMKIASRIMTE 127
             L+ ++G+G   A  ++    A         +++  +A+ + GI  K   R++ E
Sbjct: 30  EALRGIKGIGPAKARAIVEEREAHGPY-----KDTADLARRVSGIGEKSVERLVAE 80


>gi|153207802|ref|ZP_01946402.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii 'MSU Goat Q177']
 gi|161830444|ref|YP_001596464.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Coxiella burnetii RSA 331]
 gi|165923887|ref|ZP_02219719.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii RSA 334]
 gi|120576354|gb|EAX32978.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii 'MSU Goat Q177']
 gi|161762311|gb|ABX77953.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii RSA 331]
 gi|165916672|gb|EDR35276.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii RSA 334]
          Length = 113

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           LL +++G+G + A  +++        +SI       ++ +PGIS K  +R++
Sbjct: 56  LLTTLKGIGVKKAKAIIAYRKKEGNFKSIE-----ALSSVPGISQKTVARLI 102


>gi|225868912|ref|YP_002744860.1| competence protein [Streptococcus equi subsp. zooepidemicus]
 gi|225702188|emb|CAW99904.1| putative competence protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 226

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 75  LQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQS+ G+GA+ A  ++    +         L++   + ++ GI  K   ++
Sbjct: 175 LQSIPGIGAKRAQDIIDVRESLGGFKS---LED---LRKVSGIGAKTLEKL 219


>gi|319790154|ref|YP_004151787.1| excinuclease ABC, C subunit [Thermovibrio ammonificans HB-1]
 gi|317114656|gb|ADU97146.1| excinuclease ABC, C subunit [Thermovibrio ammonificans HB-1]
          Length = 586

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 40/151 (26%)

Query: 6   KGNIEGLYEDYVLIDVQGVCYIIYCPIRT-------LSCLGKIGDFCTLFVETHMRQDQI 58
           +G +     D V++D  G+   +   ++                    ++ +     +  
Sbjct: 438 RGEV--KEPDLVIVD-GGIG-QLNVALKVRDTFGLGFRVFSIAKREEVVYTDLGEVVETK 493

Query: 59  R---LFGFLS-----------------DLDRQWFMLLQSVQGVGARVAMGVLSRITAT-- 96
           R   LF F +                   D+     L SV+G+G +    ++ ++     
Sbjct: 494 RFPHLFRFFTSIRDEAHRFALSYNRKLRTDKMLHSFLSSVKGIGPKR-RALIEKLYPDLS 552

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           EL  ++       +    GI +K+A R + E
Sbjct: 553 ELA-AVSPSELAKL----GIPLKVA-REVVE 577


>gi|307243483|ref|ZP_07525634.1| comEA protein [Peptostreptococcus stomatis DSM 17678]
 gi|306493127|gb|EFM65129.1| comEA protein [Peptostreptococcus stomatis DSM 17678]
          Length = 261

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
           I L + K +  IPG+    A +I+ + + K    +++
Sbjct: 202 INLADEKSLESIPGVGPATAKKIV-DYRTKQGKFNAI 237


>gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
          Length = 577

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 9/59 (15%)

Query: 75  LQSVQGVGARVAMGVL---SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
           L +V G+G + A  +       +  +L  +        +A IPGI  K    I   LKG
Sbjct: 92  LLAVPGLGPKTARQIFEQRHIASIDDLERAAREH---KLAGIPGIQKKTEENI---LKG 144


>gi|296333282|ref|ZP_06875735.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675214|ref|YP_003866886.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149480|gb|EFG90376.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413458|gb|ADM38577.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 205

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             LQ + GVG   A  +++        ++I       I ++ GI  K   +I
Sbjct: 152 EELQGISGVGPSKAEAIIAYREENGRFQTIED-----ITKVSGIGEKSFEKI 198


>gi|120603218|ref|YP_967618.1| excinuclease ABC subunit C [Desulfovibrio vulgaris DP4]
 gi|120563447|gb|ABM29191.1| Excinuclease ABC subunit C [Desulfovibrio vulgaris DP4]
          Length = 688

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            LQ V+G+G   A  +  R  +   ++++     + +A +PG+ 
Sbjct: 616 ELQRVEGIGPATARALWERFDS---LQAMAEAGVEGLAAVPGVG 656


>gi|24373578|ref|NP_717621.1| recombination protein RecR [Shewanella oneidensis MR-1]
 gi|38372488|sp|Q8EFF8|RECR_SHEON RecName: Full=Recombination protein recR
 gi|24347900|gb|AAN55065.1|AE015643_12 recombination protein RecR [Shewanella oneidensis MR-1]
          Length = 199

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 22/58 (37%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            + +  +PG+  K A R+  +L  +       +   +S    +  H  S  ++    +
Sbjct: 11  IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLAAALSSAMSDIGHCQSCRTYTEETL 68


>gi|126725231|ref|ZP_01741074.1| 5-oxoprolinase (ATP-hydrolyzing) [Rhodobacterales bacterium
           HTCC2150]
 gi|126706395|gb|EBA05485.1| 5-oxoprolinase (ATP-hydrolyzing) [Rhodobacterales bacterium
           HTCC2150]
          Length = 1207

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMG 88
           FGF+S  +R  F+ L SV+G+G   A  
Sbjct: 587 FGFVSP-ERGLFIDLISVEGIGGSGAAA 613


>gi|159900526|ref|YP_001546773.1| phosphotransferase domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893565|gb|ABX06645.1| PHP domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 578

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           + +  V  +G + A  +       +L           +A+I G   K A+++++ L
Sbjct: 92  LQILRVPEIGPKTAARLFRDEGIQDLEALFAAAQDGRLAKIKGFGAKSAAKVLSAL 147


>gi|262199205|ref|YP_003270414.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
 gi|262082552|gb|ACY18521.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
          Length = 751

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 76  QSVQGVGARVAMGVLSRITATELVE--SIILQNSKVIAQIPGISMKIASRI---MTELKG 130
            ++ G+G +VA  +L     + + +  ++  ++   + +      + A  +   +   + 
Sbjct: 447 MNIDGLGEKVAQALLDTGLVSNVADLFALSKEDLLTLERF---GEQSAQNLVDAIARARD 503

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-NLGYGQDQATTAVVSVLKKEK 189
            A     +    ++ +    A   +     ++A+ ALV +       A  A + V  ++ 
Sbjct: 504 SATFSRLLAALGVAHIGGVAARAIAAHYPDMDALLALVDS---TAPSAEAAALEVTAEDG 560

Query: 190 NIADDS 195
              D S
Sbjct: 561 AGEDAS 566


>gi|126465173|ref|YP_001040282.1| glycerophosphoryl diester phosphodiesterase [Staphylothermus
           marinus F1]
 gi|126013996|gb|ABN69374.1| glycerophosphoryl diester phosphodiesterase [Staphylothermus
           marinus F1]
          Length = 231

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 21/98 (21%)

Query: 24  VCYII---YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80
           + Y I      +       K+ +   L+   +     ++L GF    +      L +V+ 
Sbjct: 145 IGYNIGSLEAAMNAF----KLHEKLKLY-SINPPIQGLQLIGFEKFRE-----YLVNVKN 194

Query: 81  VGARVAM------GVLSRITATELVESIILQNSKVIAQ 112
           VGA+  +       +L  +   EL++ +I  N +   +
Sbjct: 195 VGAKTVLWTVDDPSLLKGL--EELIDVVITNNVEAFTK 230


>gi|158522386|ref|YP_001530256.1| excinuclease ABC, C subunit [Desulfococcus oleovorans Hxd3]
 gi|158511212|gb|ABW68179.1| excinuclease ABC, C subunit [Desulfococcus oleovorans Hxd3]
          Length = 626

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 47  LFVETHMRQDQIRLFGFL---SDLDRQ---WFMLLQSVQGVGARVAMGVLSRITATELVE 100
           LF+   +R +  R   F       +R+       L  + G+G +    +L R    E V 
Sbjct: 535 LFLLEEIRDEAHR---FAIDYQRKERKRISLRSALDDIPGIGPQRKRMLLDRFGTVEGVR 591

Query: 101 SIILQNSKVIAQIPGISMKIASRI 124
           +  +++   +   PGI+  +A +I
Sbjct: 592 AASVEDLAAL---PGITGSMAGQI 612


>gi|110669531|ref|YP_659342.1| DNA mismatch repair protein MutS homolog, MutS3 [Haloquadratum
           walsbyi DSM 16790]
 gi|109627278|emb|CAJ53768.1| DNA mismatch repair protein MutS homolog, MutS3 [Haloquadratum
           walsbyi DSM 16790]
          Length = 704

 Score = 35.0 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI--SMKIA 121
           + GVG + A  +     A     ++   +   +++ P I      A
Sbjct: 6   IPGVGPKTAAALEELDDAE---RALKDGDVAALSRSPEISDGRATA 48


>gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
 gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
          Length = 688

 Score = 35.0 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 24/121 (19%)

Query: 20  DVQGVCYIIYCPIRTLSCLGKIGD----------FCTLFVE--THMRQDQIRLFGFLSDL 67
           D++G+ Y     +     L   GD             LF      +  +  RL   L++L
Sbjct: 457 DIEGLGYEAATALTASPVLHNEGDVFSLTEADLTQVPLFTNDGGALSANAQRL---LTNL 513

Query: 68  D----RQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           D    +  + +L   S++ VG   A  +   + + E   +I   +   +A++ G+   IA
Sbjct: 514 DVAKTKPLWRVLVALSIRHVGPSAARALAQELGSLE---AIAAADVDQLAEVDGVGRVIA 570

Query: 122 S 122
            
Sbjct: 571 E 571


>gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171]
          Length = 900

 Score = 35.0 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 70  QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126
             + +L   S++ +G   A  + S   + E   +I       ++ I GI  +IA  ++  
Sbjct: 730 DLWRVLVALSIRRLGPPTARLIASAFGSLE---AIEQAGVDELSAIDGIGPEIAESVVNW 786

Query: 127 -----ELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATT 179
                E +  +  +L +     +     E + +    +     ++   +L G+ +D A  
Sbjct: 787 FAAAREPRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTG--SLEGFSRDSAKE 844

Query: 180 AVVS 183
           A++ 
Sbjct: 845 AIIE 848


>gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
 gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
          Length = 896

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 70  QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126
             + +L   S++ +G   A  + S   + E   +I       ++ I GI  +IA  ++  
Sbjct: 726 DLWRVLVALSIRRLGPPTARLIASAFGSLE---AIEQAGVDELSAIDGIGPEIAESVVNW 782

Query: 127 -----ELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATT 179
                E +  +  +L +     +     E + +    +     ++   +L G+ +D A  
Sbjct: 783 FAAAREPRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTG--SLEGFSRDSAKE 840

Query: 180 AVVS 183
           A++ 
Sbjct: 841 AIIE 844


>gi|239905341|ref|YP_002952080.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239795205|dbj|BAH74194.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 739

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167
           +V+A +PGI  K A+RI            ++   D + + K  A      +  I  + AL
Sbjct: 414 RVLAFVPGIGPKTATRI----------FEAIRAGDRAMLGKMAAKSGEFKAL-IEFLDAL 462

Query: 168 VNLGYGQDQATTAVVSVLKK 187
             L     +  + V+     
Sbjct: 463 RALPPSPQELLSKVIEAYAP 482


>gi|299822871|ref|ZP_07054757.1| competence protein CelA [Listeria grayi DSM 20601]
 gi|299816400|gb|EFI83638.1| competence protein CelA [Listeria grayi DSM 20601]
          Length = 198

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             LQ + GVG   A  +L    +T L + +       +  I G   K   R+
Sbjct: 145 QELQGIPGVGPAKAQAILEYRESTGLFQKVED-----LKNISGFGEKTIERL 191


>gi|225165705|ref|ZP_03727504.1| PHP domain protein [Opitutaceae bacterium TAV2]
 gi|224800055|gb|EEG18485.1| PHP domain protein [Opitutaceae bacterium TAV2]
          Length = 615

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 6/97 (6%)

Query: 73  MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           + +  V G+G +    +   L       L  +        +   PG   K   +I   ++
Sbjct: 100 ITMLEVPGLGPKKIKAIHDQLGIDNLDTLAAACADGRVAAL---PGFGEKSQQKIAEGIR 156

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            +A      +  D   + +              A +A
Sbjct: 157 NRAAYARRHLWWDAHAIAQPIVAHLRTLPHVERAEAA 193


>gi|13541687|ref|NP_111375.1| family X DNA polymerase [Thermoplasma volcanium GSS1]
 gi|14325087|dbj|BAB60012.1| DNA-dependent DNA polymerase family X [Thermoplasma volcanium GSS1]
          Length = 516

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 72  FMLLQSVQGVGARVAMGV----LSRITATELVESIILQNSKVIAQIPGISMKIASRIM-- 125
           F+ L  ++G+G +  + V    L      EL  +I+    +    IPG   K  ++++  
Sbjct: 95  FISLMKIEGLGPKK-LAVLYQALGITNVEELRNAILNHKVRG---IPGFGEKSENQLLKN 150

Query: 126 TELKGKAIS 134
            E+  +   
Sbjct: 151 IEMAERVSE 159


>gi|320546389|ref|ZP_08040704.1| competence protein CelA [Streptococcus equinus ATCC 9812]
 gi|320448774|gb|EFW89502.1| competence protein CelA [Streptococcus equinus ATCC 9812]
          Length = 226

 Score = 35.0 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
             LQ++ G+GA+ A  ++          S+       +  + GI  K   ++  E
Sbjct: 173 EELQTISGIGAKRAQDIIDYRDNNGGFSSVDD-----LKNVSGIGEKTLEKLKAE 222


>gi|224823841|ref|ZP_03696950.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lutiella nitroferrum 2002]
 gi|224604296|gb|EEG10470.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lutiella nitroferrum 2002]
          Length = 119

 Score = 35.0 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
             L+S+ G+G   A  ++   T     +++       +  +PGI  K   ++
Sbjct: 30  QELESLNGIGPAKAKAIMDYRTKQGPFKTVDE-----LKNVPGIGDKTLEKL 76


>gi|313680568|ref|YP_004058307.1| php domain protein [Oceanithermus profundus DSM 14977]
 gi|313153283|gb|ADR37134.1| PHP domain protein [Oceanithermus profundus DSM 14977]
          Length = 579

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELV---ESIILQNSKVIAQIPGISMKIASRIM--TE 127
           + +  V GVG + A  +   +    L    E++       + ++PG   K  +R++   E
Sbjct: 97  LEVMRVPGVGPKTAKLLYDELGVDSLAAFKEALESG---RVLELPGFGEKKRARLLHNLE 153

Query: 128 L 128
           L
Sbjct: 154 L 154


>gi|313124830|ref|YP_004035094.1| DNA mismatch repair protein, muts family [Halogeometricum
           borinquense DSM 11551]
 gi|312291195|gb|ADQ65655.1| DNA mismatch repair protein, MutS family [Halogeometricum
           borinquense DSM 11551]
          Length = 662

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           + GVG + A   LS +   E   ++   +   +A+ PG
Sbjct: 6   IPGVGEKTAEA-LSELDDAE--RALADGDVAALARAPG 40


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 95  ATEL--VESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152
             +L  V +++  +   +  IPGI  K A++++TE  G   +L +      S + +    
Sbjct: 174 PEQLGDVLALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALDAAPSMKKSKMQENLIA 233

Query: 153 ICSMPSFAINAISALVNL 170
              M   +      LV L
Sbjct: 234 HADMARLSRR----LVAL 247


>gi|83589125|ref|YP_429134.1| excinuclease ABC subunit C [Moorella thermoacetica ATCC 39073]
 gi|119367672|sp|Q2RLU8|UVRC_MOOTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|83572039|gb|ABC18591.1| Excinuclease ABC subunit C [Moorella thermoacetica ATCC 39073]
          Length = 613

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 42/145 (28%)

Query: 14  EDYVLID--------------VQGVCYIIYCPIRTLSC----LGKIG---------DFCT 46
            D+VLID                GV Y    P   L+     L ++G         +   
Sbjct: 462 PDFVLIDGGLGQLHAARETMEAMGVGY---IPTFGLAKEEELLFRVGTSEPIRLPRESKA 518

Query: 47  LFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQGVGARVAMGVLSRITATELVE 100
           L +  H+R +  R   F         ++  +  +L  + GVG +    +L    +   V 
Sbjct: 519 LQILQHLRDEVHR---FAITYHRQKREKTAYRSVLDDIPGVGPKRKKALLRHFGS---VA 572

Query: 101 SIILQNSKVIAQIPGISMKIASRIM 125
           +I     + +  + G++  +A+RI+
Sbjct: 573 AISKATLEDLLAVEGMNRTVAARIL 597


>gi|46201468|ref|ZP_00208112.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 221

 Score = 34.6 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 2   IGKIKGNIE-GLYEDYVLIDVQGVCYIIYC 30
           I +++G +E       +++ VQGV Y I  
Sbjct: 192 ISRLRGKLERSRKTPTLILTVQGVGYRINL 221


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 95  ATEL--VESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152
             +L  V +++  +   +  IPGI  K A++++TE  G   +L +      S + +    
Sbjct: 174 PEQLGDVLALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALEAAPSMKKSKMQENLIA 233

Query: 153 ICSMPSFAINAISALVNL 170
              M   +      LV L
Sbjct: 234 HADMARLSRR----LVAL 247


>gi|260429825|ref|ZP_05783801.1| aliphatic sulfonates import ATP-binding protein SsuB 2 [Citreicella
           sp. SE45]
 gi|260419308|gb|EEX12562.1| aliphatic sulfonates import ATP-binding protein SsuB 2 [Citreicella
           sp. SE45]
          Length = 197

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156
           ++  S+    +  +    GI      RI+  L  +    S    ++M+ V +E   +   
Sbjct: 16  DVHFSVSRGETVALLGPSGIGKSTLLRIVAGL-DRDFDGSVQRPEEMAMVFQEPTLLPWR 74

Query: 157 PSFAINAISALVNL-----GYGQDQATTAVVSVLKKEKNIA-----DDSQIIRLAL 202
                   SAL NL     G    +A  A+  V  K +  A        Q  RLAL
Sbjct: 75  --------SALQNLLLVHPGLTPREARAALDRVGLKGREDAFPRALSLGQQRRLAL 122


>gi|256422507|ref|YP_003123160.1| ABC transporter [Chitinophaga pinensis DSM 2588]
 gi|256037415|gb|ACU60959.1| ABC transporter related [Chitinophaga pinensis DSM 2588]
          Length = 529

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 22/117 (18%)

Query: 96  TELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS 155
            +L   +   +   +  I G+      RI+    GK    +  +  +       Q     
Sbjct: 20  QDLNLILNDGDKAALVGINGVGKSTLLRII---SGKLQPTAGEIISEEQPWYVPQHLGDY 76

Query: 156 MPSFAINAISALVNLGYGQDQAT-TAVVSVLKKEKNIA---------DDSQIIRLAL 202
                  A+ A         +A   A+ ++L  + +           D    ++ AL
Sbjct: 77  DTWSVARALGA---------EARLKALQAILAGDTDPEHFTVLGDNWDIENRVKQAL 124


>gi|160902691|ref|YP_001568272.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Petrotoga mobilis SJ95]
 gi|160360335|gb|ABX31949.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Petrotoga mobilis SJ95]
          Length = 171

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-------IAQIP 114
           GF    D      + +V G+G +    +   I  +E++  I+ +   +       +  +P
Sbjct: 74  GFREIED------IMNVSGIGEKTFSNIKDYIYLSEVIYEIVDEKININEASSEELESLP 127

Query: 115 GISMKIASRIM 125
           GI    A +I+
Sbjct: 128 GIGKVSAQKII 138


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 16/108 (14%)

Query: 25  CYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL----QSVQ 79
            Y     I TL+C  + +G   T+       +D ++L G       + F  +      V+
Sbjct: 119 GYEADDIIATLACQARDLGGRVTII---SSDKDLMQLVG----DGVEMFDAMKNRRIDVE 171

Query: 80  GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           GV  +  +G    +     V+++   +   +   PGI +K A+ ++ E
Sbjct: 172 GVEEKFGVGPDRVVD----VQALAGDSVDNVPGAPGIGIKTAALLINE 215


>gi|86158982|ref|YP_465767.1| PHP-like phosphoesterase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775493|gb|ABC82330.1| phosphoesterase, PHP-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 592

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 6/56 (10%)

Query: 73  MLLQSVQGVGARV--AM-GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
           + L  V  +G +   A+   L   +  EL  +        +  + G   K   RI+
Sbjct: 92  LELLRVPDLGPKKIAALHAALGVASVAELEAACREG---RVRGVKGFGEKTEQRIL 144


>gi|46579214|ref|YP_010022.1| excinuclease ABC subunit C [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448627|gb|AAS95281.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 702

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            LQ V+G+G   A  +  R  +   ++++     + +A +PG+ 
Sbjct: 630 ELQRVEGIGPATARALWERFDS---LQAMADAGVEGLAAVPGVG 670


>gi|84502540|ref|ZP_01000676.1| probable iron uptake ABC transporter periplasmic solute-binding
           protein [Oceanicola batsensis HTCC2597]
 gi|84389352|gb|EAQ02149.1| probable iron uptake ABC transporter periplasmic solute-binding
           protein [Oceanicola batsensis HTCC2597]
          Length = 335

 Score = 34.6 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 17/93 (18%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            GV Y +      L       +    F++  M  D I L+        Q +  L ++ GV
Sbjct: 242 GGVGYELEASG--LMASSDNKEAAKAFLDWTMSDDAIDLY--------QQYKALITIPGV 291

Query: 82  GARVAM------GVLSRITAT-ELVESIILQNS 107
            A  A         +S I A  + VE+   Q++
Sbjct: 292 DASQAAEDAGLPADISTILADIDFVEAAGNQDA 324


>gi|223044134|ref|ZP_03614173.1| preprotein translocase, YajC subunit [Staphylococcus capitis
          SK14]
 gi|314933802|ref|ZP_07841167.1| preprotein translocase, YajC subunit [Staphylococcus caprae C87]
 gi|222442528|gb|EEE48634.1| preprotein translocase, YajC subunit [Staphylococcus capitis
          SK14]
 gi|313653952|gb|EFS17709.1| preprotein translocase, YajC subunit [Staphylococcus caprae C87]
          Length = 87

 Score = 34.6 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 2  IGKIKGNIEGLYEDYVLIDVQG 23
          IG IKG ++ + E  V+I V G
Sbjct: 48 IGGIKGTVKSVDETTVVITVNG 69


>gi|194017660|ref|ZP_03056270.1| ComE operon protein 1 [Bacillus pumilus ATCC 7061]
 gi|194010560|gb|EDW20132.1| ComE operon protein 1 [Bacillus pumilus ATCC 7061]
          Length = 209

 Score = 34.6 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 74  LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
            LQ++ G+G   A  +++ R    E  +    ++   +  I G   K   R+  EL
Sbjct: 157 ELQTINGIGPAKAEAIITYREEHGEFQQI---ED---LRNISGFGEKTIERLKNEL 206


>gi|77407217|ref|ZP_00784185.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B]
 gi|77174172|gb|EAO77073.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B]
          Length = 46

 Score = 34.6 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           ++ +L GK +  S          +++ +++         A+ AL+ LGY   +
Sbjct: 1   MIPDLSGKFVEASGESATSRKVSSEQNSNL-------EEAMEALLALGYKATE 46


>gi|269795321|ref|YP_003314776.1| multidrug ABC transporter ATPase/permease [Sanguibacter keddieii
           DSM 10542]
 gi|269097506|gb|ACZ21942.1| ABC-type multidrug transport system, ATPase and permease component
           [Sanguibacter keddieii DSM 10542]
          Length = 634

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 32/148 (21%)

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGV----LSRITATELVESIILQNSKVIAQIPGI 116
           +G   D  R++       + +G ++AM      +   T   L  +I+      ++ I G 
Sbjct: 240 YGRPDDESRRFARDASRARDIGVKLAMYSTYFRVGLTTVAALAVAIVYG-VGGLSAISG- 297

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
                                VV    + + +    + ++ +  ++ ++ALV+  + +  
Sbjct: 298 ----------------GLTVGVVVALTAYLGRLYGPLTALSNVQVDVMTALVS--FER-- 337

Query: 177 ATTAVVSVLKKEKNIADDSQI--IRLAL 202
               V+ VL  E ++ D      +R AL
Sbjct: 338 ----VLEVLDLEPSVTDAEDATDLRDAL 361


>gi|325283672|ref|YP_004256213.1| PHP domain-containing protein [Deinococcus proteolyticus MRP]
 gi|324315481|gb|ADY26596.1| PHP domain protein [Deinococcus proteolyticus MRP]
          Length = 511

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 75  LQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI------MT 126
           L +V+G+G +    +      +   L ++       ++A + G   K A  +      + 
Sbjct: 97  LFAVRGLGPKKVRALWDAGIDSVPALRDAAQSG---ILAAVKGFGAKGAQTLGQAAQFVL 153

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPS 158
           + + + +   + +  +       QA   +  S
Sbjct: 154 DAQDRFLLSQATLAAEAVAGALAQAGFGTEFS 185


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 17/79 (21%)

Query: 62  GF---LSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATEL-------------VESIIL 104
           GF   +S  DR  F L+  +V  +  +  +  ++R+    +             + +++ 
Sbjct: 138 GFEVLISSGDRDAFQLVSDNVTVLYPKRGVSEIARMDPAAVEEKYGVTPRLYPDLAALVG 197

Query: 105 QNSKVIAQIPGISMKIASR 123
           + S  +  +PG+  K A++
Sbjct: 198 EQSDNLPGVPGVGPKTAAK 216


>gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
 gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
          Length = 682

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 17/114 (14%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------ 125
           F+    ++GVG   A  + +     E   ++   +   + ++P +    A  I       
Sbjct: 521 FIYALGIRGVGETTARMLANSFQTLE---ALQQADVDSLKKVPDVGDITAEWIYDFFRAE 577

Query: 126 --TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVNLG 171
              E+  + ++        ++   +       + +  +       A   L  LG
Sbjct: 578 HNLEVIDRLLAAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQMLQALG 631


>gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
 gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
          Length = 678

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 17/114 (14%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------ 125
           F+    ++GVG   A  + +     E   ++   +   + ++P +    A  I       
Sbjct: 517 FIYALGIRGVGETTARMLANSFQTLE---ALQQADVDSLKKVPDVGDITAEWIYDFFRAE 573

Query: 126 --TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVNLG 171
              E+  + ++        ++   +       + +  +       A   L  LG
Sbjct: 574 HNLEVIDRLLAAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQMLQALG 627


>gi|289580814|ref|YP_003479280.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
 gi|289530367|gb|ADD04718.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
          Length = 586

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           +  ++GVG + A  +   L   T  +L ++        I ++ G   K    I    +  
Sbjct: 99  ITRIEGVGPKTAGKLYRELGIETLDDLEDAAEAGE---IQEVKGFGPKTEENI----RDN 151

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
                 V Q+ +    +  A        +++A+ 
Sbjct: 152 IEFAREVGQRQLLGEARPLADDVLAFLESLDAVE 185


>gi|55379328|ref|YP_137178.1| Hef nuclease [Haloarcula marismortui ATCC 43049]
 gi|55232053|gb|AAV47472.1| ATP-dependent RNA helicase homolog eIF-4A [Haloarcula marismortui
           ATCC 43049]
          Length = 852

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           VG   A  +L    +   VE+++  +   + ++ GI    A RI
Sbjct: 802 VGPVTARTLLESFGS---VEAVMTADKDDLLEVSGIGDVTADRI 842


>gi|308048900|ref|YP_003912466.1| recombination protein RecR [Ferrimonas balearica DSM 9799]
 gi|307631090|gb|ADN75392.1| recombination protein RecR [Ferrimonas balearica DSM 9799]
          Length = 199

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152
            K +  +PG+  + A R+  +L  +     + + + +S    +  H
Sbjct: 11  IKALQCLPGVGPRSAQRMTFQLLERDRVAGTRLGEALSRAMSDVGH 56


>gi|119370542|sp|Q72DX8|UVRC_DESVH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|311233046|gb|ADP85900.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris RCH1]
          Length = 688

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            LQ V+G+G   A  +  R  +   ++++     + +A +PG+ 
Sbjct: 616 ELQRVEGIGPATARALWERFDS---LQAMADAGVEGLAAVPGVG 656


>gi|300711869|ref|YP_003737683.1| PHP domain protein [Halalkalicoccus jeotgali B3]
 gi|299125552|gb|ADJ15891.1| PHP domain protein [Halalkalicoccus jeotgali B3]
          Length = 580

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELV--ESIILQNSKVIAQIPGISMKIASRIM--TE 127
              L SV+GVG +    +   +    L   E++    +  I +I G   K    I+   E
Sbjct: 92  MDELTSVEGVGPKTVGTLYEALGVENLADLETVAS--AGEIQEIKGFGPKTEQNILSGLE 149

Query: 128 LKGKAIS 134
              KA  
Sbjct: 150 FARKASE 156


>gi|324990586|gb|EGC22522.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK353]
          Length = 445

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179
           A + + +LK +     ++  +     N   A          + ++ L  LGY  +  A  
Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241

Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207
             V+ + K  K+ A   + IIRLA  L+ +  
Sbjct: 242 VTVIGLPKHAKDAAQGVNGIIRLAKVLQPLDS 273


>gi|307151592|ref|YP_003886976.1| recombination protein RecR [Cyanothece sp. PCC 7822]
 gi|306981820|gb|ADN13701.1| recombination protein RecR [Cyanothece sp. PCC 7822]
          Length = 185

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 111 AQIPGISMKIASRIMT 126
            ++PG+  K A R+  
Sbjct: 2   QRLPGVGPKTAQRLAL 17


>gi|254500672|ref|ZP_05112823.1| Glycosyl hydrolase family 9 [Labrenzia alexandrii DFL-11]
 gi|222436743|gb|EEE43422.1| Glycosyl hydrolase family 9 [Labrenzia alexandrii DFL-11]
          Length = 557

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%)

Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVL 185
            E  GK    +  +       +  +A +  + +F  +A++ LV  GY   +    +   L
Sbjct: 242 LETYGKPDLAAVYLGSAFRAWDAAEAGLSDIDAFYTDAVAGLVAGGYSNSEGWPEIRLKL 301

Query: 186 KKEKNI 191
           K+E   
Sbjct: 302 KEEAET 307


>gi|258593484|emb|CBE69823.1| PHP C-terminal domain protein [NC10 bacterium 'Dutch sediment']
          Length = 577

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 20/88 (22%)

Query: 75  LQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGISMKIA------- 121
           L  + G+G  +A  +   I         EL  +I       +  IPG+  K         
Sbjct: 53  LAEIAGIGKDLAAKIQQAIETGRIEYLEELRTAIPRG-VVELMAIPGVGPKTTKLLFQQL 111

Query: 122 -----SRI-MTELKGKAISLSSVVQQDM 143
                 R+    L+GK + L  + Q+ +
Sbjct: 112 QVDSVERLETLALQGKLLGLPGIKQKTV 139


>gi|169831315|ref|YP_001717297.1| phosphotransferase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638159|gb|ACA59665.1| PHP C-terminal domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 578

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TEL 128
            L +V G+G R A  +   +  + L E   L  +  +A++ G+  K  ++I+   EL
Sbjct: 92  QLLTVPGIGPRTARILYEELQISGLDELERLGRAGRLAELRGLGEKTQNKILSGLEL 148


>gi|111225216|ref|YP_716010.1| DNA ligase [Frankia alni ACN14a]
 gi|122953782|sp|Q0RDH8|DNLJ_FRAAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|111152748|emb|CAJ64491.1| DNA ligase [Frankia alni ACN14a]
          Length = 771

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 33/184 (17%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDL--------D-- 68
           +D+ G+ Y     +     +G IGD     +     +    L GF            +  
Sbjct: 500 LDIDGLGYETAIALLEADRVGDIGD-----IFHLTPESFEGLRGFGQKKIDQILRGVEAA 554

Query: 69  --RQWFMLL--QSVQGVGARVAMGVLSRITATELVE--SIILQNSKVIAQIPGISMKIAS 122
             R  + LL   S++ VG   A  +     A EL    +I    ++ +A + G+  KIAS
Sbjct: 555 RHRPLWRLLVGLSIRHVGPTAARAL-----ARELRSLDAIAAAPAEQLAAVEGVGPKIAS 609

Query: 123 RIM---TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQAT 178
            ++    + + + I ++ +     S  +   A            I+    L G+ +D AT
Sbjct: 610 AVVDWFADARHRDI-VARIAAGGASLADAGAAEGPRPLDGVAVVITG--TLDGWSRDSAT 666

Query: 179 TAVV 182
            AV 
Sbjct: 667 EAVQ 670


>gi|15679414|ref|NP_276531.1| Hef nuclease [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622527|gb|AAB85892.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 738

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA-- 121
           L+  ++Q F+ ++S+  +G++ A  +L    +   VE ++  + K +  + GI  K A  
Sbjct: 662 LTLREKQLFI-VESLPNIGSKYAERLLEAFGS---VEGVMNASEKELRSVEGIGAKRASE 717

Query: 122 -SRIM-TELKG 130
             R++  E KG
Sbjct: 718 IRRVIEAEFKG 728


>gi|332523820|ref|ZP_08400072.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176]
 gi|332315084|gb|EGJ28069.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATE-LVESIILQNSKVIAQIPGISMKIASRI 124
             L  + G+G + A  ++    +     +   L++   + +I GI  K   ++
Sbjct: 175 EDLTKIPGIGEKRAKEIIDVRESQGGFKK---LED---LLKISGIGKKTLEKL 221


>gi|111223984|ref|YP_714778.1| excinuclease ABC subunit C [Frankia alni ACN14a]
 gi|111151516|emb|CAJ63235.1| DNA excision repair enzyme UvrABC; UvrC subunit [Frankia alni
           ACN14a]
          Length = 802

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 38  LGKIGDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFML---LQSVQGVGARVAMGVLS 91
           L +  +   L++   +R +  R   F        R   M+   L  V G+G      +L 
Sbjct: 650 LPRTSEA--LYLLQRVRDEAHR---FAITYHRQKRSAAMVTSALDDVPGLGETRRKALLR 704

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           +  +   V +   +      Q+PGI  + A+ I+T L
Sbjct: 705 QFGSVAKVRAASAEEIA---QVPGIGPRTAAAILTAL 738


>gi|212550836|ref|YP_002309153.1| 30S ribosomal protein S1 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549074|dbj|BAG83742.1| 30S ribosomal protein S1 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 612

 Score = 34.6 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 15/70 (21%)

Query: 2   IGKIK------GNIEGLYEDYVLIDVQGVCYI---IYCPIRTLSCLG--KIGDFCTLFVE 50
           IGK+K      G +  + +  V ID   + Y    +             K+GD   +++E
Sbjct: 58  IGKVKNNEVVVGKVTAITKKEVFID---IGYKSDGV-VSASEFRYCPDLKVGDEVEVYIE 113

Query: 51  THMRQDQIRL 60
               ++   L
Sbjct: 114 NQEDKNGQLL 123


>gi|307105332|gb|EFN53582.1| hypothetical protein CHLNCDRAFT_53763 [Chlorella variabilis]
          Length = 403

 Score = 34.6 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 21/145 (14%)

Query: 59  RLFG--FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           +L+G  F S         L SV+  GA  A          EL  +         AQ+P  
Sbjct: 154 QLYGSGFYSQEVAALAYDLLSVRVRGAEAATNF-----PLELYHA----ELAAGAQVP-- 202

Query: 117 SMKIASRIMTELK--GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG-YG 173
                 +++T L+  GKA++     Q   + +   +       +    AIS   +LG + 
Sbjct: 203 ----LEQLVTHLRAQGKALARIDACQGAAASLEPWELQARGCAAGLSEAISGQPSLGLFA 258

Query: 174 -QDQATTAVVSVLKKEKNIADDSQI 197
            + +A  AV   L     +A    +
Sbjct: 259 CEAEAARAVDRGLLARDGLATAPLL 283


>gi|258652974|ref|YP_003202130.1| excinuclease ABCsubunit C [Nakamurella multipartita DSM 44233]
 gi|258556199|gb|ACV79141.1| excinuclease ABC, C subunit [Nakamurella multipartita DSM 44233]
          Length = 679

 Score = 34.6 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
           L +V G+G      ++    +   L  +    + + I Q+PG+  + A 
Sbjct: 615 LDNVPGLGEVRRKALVRHFGSVAALRRA----DVEQILQVPGVGRRTAE 659


>gi|302550647|ref|ZP_07302989.1| excinuclease ABC, C subunit [Streptomyces viridochromogenes DSM
           40736]
 gi|302468265|gb|EFL31358.1| excinuclease ABC, C subunit [Streptomyces viridochromogenes DSM
           40736]
          Length = 496

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92
           L  L +I D    F  T+ R          +   ++ F    L  V G+G      +L  
Sbjct: 370 LYLLQRIRDEAHRFAITYQR----------TKRSKR-FRSSPLDDVPGLGDTRKQALLKH 418

Query: 93  I-TATELVESIILQNSKVIAQIPGISMKIASRI 124
             +  +L  + I Q    I ++PGI  K A  I
Sbjct: 419 FGSLKKLRSATIDQ----ICEVPGIGRKTAETI 447


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score = 34.6 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 19/82 (23%)

Query: 83  ARVAMGVLSRITATELVE------------SIILQNSK-VIAQIPGISMKIASRIMT--- 126
            R  +  L+R T   +VE            + +  +    +  IPG+  K AS+ +    
Sbjct: 162 PRKGVSDLTRFTPEAVVEKYGLTPSQYPDFAALRGDPSDNLPGIPGVGEKTASKWILEYG 221

Query: 127 ---ELKGKAISLSSVVQQDMSC 145
              EL  KA ++   V   +  
Sbjct: 222 SLQELVDKADTVRGKVGDSLRA 243


>gi|302838945|ref|XP_002951030.1| hypothetical protein VOLCADRAFT_117717 [Volvox carteri f.
           nagariensis]
 gi|300263725|gb|EFJ47924.1| hypothetical protein VOLCADRAFT_117717 [Volvox carteri f.
           nagariensis]
          Length = 455

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 16/111 (14%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  V G+G + A+ +L+              N   I +   +      R    L+    +
Sbjct: 333 LPGVNGIGPKTAVSLLASY-----------GNLAGIYRA--VGEMTPKRRAA-LQSALPA 378

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATTAVVSV 184
            S         +    A        +   + A + L GY  D    AV+ +
Sbjct: 379 -SQYTLTLARVLGTPGAPALPAGVLSEELLQARLKLNGYDNDAVQKAVLEL 428


>gi|194017065|ref|ZP_03055677.1| DNA polymerase beta [Bacillus pumilus ATCC 7061]
 gi|194010933|gb|EDW20503.1| DNA polymerase beta [Bacillus pumilus ATCC 7061]
          Length = 570

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TELK 129
           L  + G+G +    +   L    A  L E+   +  + +A   G   K   +I+   E  
Sbjct: 90  LLKLPGLGGKKIAKLYQELGVHDAQSLKEACEAEKVQALA---GFGKKTEEKILAALEEA 146

Query: 130 GKAIS 134
           GK   
Sbjct: 147 GKQPE 151


>gi|157693277|ref|YP_001487739.1| hypothetical protein BPUM_2517 [Bacillus pumilus SAFR-032]
 gi|157682035|gb|ABV63179.1| DNA polymerase beta [Bacillus pumilus SAFR-032]
          Length = 570

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 75  LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TELK 129
           L  + G+G +    +   L    A  L E+   +  + +A   G   K   +I+   E  
Sbjct: 90  LLKLPGLGGKKIAKLYQELGVHDAQSLKEACEAEKVQALA---GFGKKTEEKILAALEEA 146

Query: 130 GKAIS 134
           GK   
Sbjct: 147 GKQPE 151


>gi|126740462|ref|ZP_01756150.1| uroporphyrin-III C-methyltransferase [Roseobacter sp. SK209-2-6]
 gi|126718598|gb|EBA15312.1| uroporphyrin-III C-methyltransferase [Roseobacter sp. SK209-2-6]
          Length = 272

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 18/116 (15%)

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPG------ISMKIAS----RIMTELKGK 131
           G   ++  L+              +   +A+ PG      +  K A     R++     +
Sbjct: 157 GRNTSVRFLTGHDMKGF----ADHDWAALAR-PGEVAAIYMGKKSARFVQGRLIMHGADR 211

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINA-IS--ALVNLGYGQDQATTAVVSV 184
              ++ +     +     +  +  +P+   +A +S  AL  LG    Q+  A+  +
Sbjct: 212 FTPVTVIENASRADERVLETTLDRLPADLADADLSGPALTFLGLAPRQSRAALADL 267


>gi|269837329|ref|YP_003319557.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269786592|gb|ACZ38735.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 554

 Score = 34.6 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 13/78 (16%)

Query: 64  LSDLDRQ--------WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK-----VI 110
              ++R+            L +++G+G  +A  +   +       +  L +        +
Sbjct: 34  ADAVEREPEPLEAIIAREELTAIEGIGPGLAAAITEIVQTGRYSATEELLDEVPGTLLTL 93

Query: 111 AQIPGISMKIASRIMTEL 128
             IPG+  K   R+  EL
Sbjct: 94  LGIPGVGPKTVGRLYREL 111


>gi|220915380|ref|YP_002490684.1| Tetratricopeptide TPR_2 repeat protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953234|gb|ACL63618.1| Tetratricopeptide TPR_2 repeat protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 1256

 Score = 34.6 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----LVNLGYGQDQATTAV 181
            E +G  ++ ++             A   +         SA    LV L +   Q   A+
Sbjct: 439 LEARGALLAEATASAFATVPSAVRAAARSARRLGRTEEASARSRTLVALRFDDAQTRAAL 498

Query: 182 VSVLKKEKNIADDSQIIRLALR 203
             +L    ++A    ++  ALR
Sbjct: 499 AQILADRGDVAGARALLEEALR 520


>gi|121533599|ref|ZP_01665426.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307590|gb|EAX48505.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
          Length = 576

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 16/99 (16%)

Query: 35  LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ-----WFMLLQSVQGVGARVAMGV 89
           L  +  IG   T  ++ ++   ++  +    +  R+      F  L  + G+G + A+ +
Sbjct: 54  LQGIKGIGKTMTQHIKEYIETGRVTYY----EELREQVPPVLFE-LVKIPGLGPKKALLL 108

Query: 90  ---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125
              L   +  EL  +      K ++   G   K   +I+
Sbjct: 109 HEQLGINSVGELEYACRENRLKTLS---GFGDKSQDKIL 144


>gi|322388003|ref|ZP_08061610.1| competence protein CelA [Streptococcus infantis ATCC 700779]
 gi|321141276|gb|EFX36774.1| competence protein CelA [Streptococcus infantis ATCC 700779]
          Length = 213

 Score = 34.2 bits (78), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 73  MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRI 124
             L+ V+G+GA+ A  ++  R +  +            + ++ GI  K   ++
Sbjct: 160 EELKQVKGLGAKRAQDIIDHRESNGKFKS------VDELKKVSGIGAKTIEKL 206


>gi|226225942|ref|YP_002760048.1| DNA polymerase X family protein [Gemmatimonas aurantiaca T-27]
 gi|226089133|dbj|BAH37578.1| DNA polymerase X family protein [Gemmatimonas aurantiaca T-27]
          Length = 592

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 73  MLLQSVQGVGARVAMGVLSRITAT---ELVESIILQNSKVIAQIPGISMKIASRI---MT 126
           + +  + G+G      +   +      EL E         +A +P    + A RI   + 
Sbjct: 101 LEMLRIPGLGPARIRAIHDGLDIDSVMELEEVARNG---RLAALPRFGERTAERILKGIA 157

Query: 127 ELK 129
           +L+
Sbjct: 158 DLR 160


>gi|197120668|ref|YP_002132619.1| hypothetical protein AnaeK_0248 [Anaeromyxobacter sp. K]
 gi|196170517|gb|ACG71490.1| Tetratricopeptide TPR_2 repeat protein [Anaeromyxobacter sp. K]
          Length = 1256

 Score = 34.2 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----LVNLGYGQDQATTAV 181
            E +G  ++ ++             A   +         SA    LV L +   Q   A+
Sbjct: 439 LEARGALLAEATASAFATVPSAVRAAARSARRLGRTEEASARSRTLVALRFDDAQTRAAL 498

Query: 182 VSVLKKEKNIADDSQIIRLALR 203
             +L    ++A    ++  ALR
Sbjct: 499 AQILADRGDVAGARALLEEALR 520


>gi|167827081|ref|ZP_02458552.1| DNA polymerase X family/PHP domain protein [Burkholderia
           pseudomallei 9]
          Length = 253

 Score = 34.2 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 74  LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126
            L  V G+GA+    +   L   T  +L  +      + +   PG   K     A  I  
Sbjct: 95  ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
            L+ K+      +    +                  A++A
Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188


>gi|16800587|ref|NP_470855.1| hypothetical protein lin1519 [Listeria innocua Clip11262]
 gi|16413992|emb|CAC96750.1| comEA [Listeria innocua Clip11262]
          Length = 200

 Score = 34.2 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 149 LQQVPGIGDSKATAIIEYREKEGLFQTIED-----LKNVTGIGEKTVEKL 193


>gi|302546283|ref|ZP_07298625.1| excinuclease ABC subunit C [Streptomyces hygroscopicus ATCC 53653]
 gi|302463901|gb|EFL26994.1| excinuclease ABC subunit C [Streptomyces himastatinicus ATCC 53653]
          Length = 700

 Score = 34.2 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 75  LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122
           L +V G+G      +L    +   L  + + Q    I ++PG+  K A 
Sbjct: 615 LDAVPGLGDSRKHALLKHFGSVKRLRAATVEQ----ICEVPGVGRKTAE 659


>gi|313623714|gb|EFR93861.1| ComEA family DNA-binding protein [Listeria innocua FSL J1-023]
          Length = 200

 Score = 34.2 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           LQ V G+G   A  ++       L ++I       +  + GI  K   ++
Sbjct: 149 LQQVPGIGDSKATAIIEYREKEGLFQTIED-----LKNVTGIGEKTVEKL 193


>gi|124262836|ref|YP_001023306.1| helicase-associated endonuclease for fork-structured DNA
           [Methylibium petroleiphilum PM1]
 gi|124262082|gb|ABM97071.1| helicase-associated endonuclease for fork-structured DNA
           [Methylibium petroleiphilum PM1]
          Length = 216

 Score = 34.2 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 74  LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           L++ + GVG   A  +++   +   V + ++   + +A +PG+  K A ++
Sbjct: 161 LVEGLPGVGPGRAQAIIAHFGS---VHAALVATEQELAGVPGLGAKTAKKV 208


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.179    0.583 

Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,528,462,426
Number of Sequences: 14124377
Number of extensions: 212931570
Number of successful extensions: 924676
Number of sequences better than 10.0: 3789
Number of HSP's better than 10.0 without gapping: 4458
Number of HSP's successfully gapped in prelim test: 1359
Number of HSP's that attempted gapping in prelim test: 909004
Number of HSP's gapped (non-prelim): 7337
length of query: 207
length of database: 4,842,793,630
effective HSP length: 133
effective length of query: 74
effective length of database: 2,964,251,489
effective search space: 219354610186
effective search space used: 219354610186
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.4 bits)
S2: 79 (34.6 bits)