BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] (207 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] gi|254040230|gb|ACT57026.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL Sbjct: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI Sbjct: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA Sbjct: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 VVSVLKKEKNIADDSQIIRLALRAISC Sbjct: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 >gi|315122880|ref|YP_004063369.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496282|gb|ADR52881.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 208 Score = 350 bits (899), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 167/208 (80%), Positives = 194/208 (93%), Gaps = 1/208 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKIKGNIEGLYEDYVLIDVQG+CYI+YCPIRTLSCLGKIGDFCTLFVETH+RQDQIRL Sbjct: 1 MIGKIKGNIEGLYEDYVLIDVQGICYIVYCPIRTLSCLGKIGDFCTLFVETHVRQDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLSDL+R+WF+LLQSVQGVGARVAMGVLSRIT ELV+SIILQN+K++AQIPGI K+ Sbjct: 61 FGFLSDLERKWFVLLQSVQGVGARVAMGVLSRITPVELVDSIILQNNKILAQIPGIGAKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179 ++RIM ELKGKA+SLSS ++++SC+N E++++C SM S AI+AISALVNLGYGQDQAT Sbjct: 121 SNRIMIELKGKAVSLSSSEKKEISCLNGEKSNVCESMSSSAIDAISALVNLGYGQDQATV 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AVVS+LKKEKNI DDSQIIRLALR ++C Sbjct: 181 AVVSILKKEKNITDDSQIIRLALREMTC 208 >gi|222086988|ref|YP_002545522.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84] gi|254766935|sp|B9J9J0|RUVA_AGRRK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221724436|gb|ACM27592.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84] Length = 204 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG IE + EDY L+DV GVCY+ YC RTLS LG +G+ C LF+ET++R+DQIRL Sbjct: 1 MIGKLKGTIEEIGEDYALVDVHGVCYVAYCSARTLSRLGSVGEACILFIETYVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQ+VQGVGA+VA+ +LS +T +EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMAVLEREWFNLLQTVQGVGAKVALALLSTLTPSELANAIALQDRTAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K + + + + K++ P+ +A+SAL NLGY +DQA A Sbjct: 121 AMRIVTELKNKVPAFAG---EATNIGFKQELGEGVAPAPVSDAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +K + AD +++IRL L+ +S Sbjct: 178 IAAAMKVAGDEADSAKLIRLGLKELS 203 >gi|163758803|ref|ZP_02165890.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica DFL-43] gi|162284093|gb|EDQ34377.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica DFL-43] Length = 205 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 101/206 (49%), Positives = 141/206 (68%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG IE + ED+VLIDV GVCY+ +C RTLS LG G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIEEIDEDHVLIDVHGVCYVAFCSSRTLSRLGSAGEAAVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+R+WF LLQSVQGVGA+VA+ VLS +T +EL +I LQ+ ++A+ PGI K+ Sbjct: 61 FGFETALEREWFRLLQSVQGVGAKVALAVLSTLTTSELANAIALQDKAMVARAPGIGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +LS M + + S P +A+SAL NLGY +DQA A Sbjct: 121 AQRIVAELKNKAPALSGDAGSTMGLKQELGEGVASAP--IADAVSALCNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K AD +++IRL L+ ++ Sbjct: 179 VAAAMKTAGEDADSAKLIRLGLKELA 204 >gi|332716453|ref|YP_004443919.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium sp. H13-3] gi|325063138|gb|ADY66828.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium sp. H13-3] Length = 205 Score = 197 bits (502), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 140/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG IE + DYVL+DV GVCY+ YC RTLS +G G+ LF+ET++R+DQ+RL Sbjct: 1 MIGKLKGTIEEIGTDYVLVDVHGVCYVAYCSARTLSKIGSAGEAVVLFIETYVREDQLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQSVQGVG++VA+ VLS ++ +EL +I LQ+ +I++ PG+ K+ Sbjct: 61 FGFLSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKVMISRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TEL+ KA + + + + + S P +A+SAL NLGY +DQA A Sbjct: 121 AVRLVTELRNKAPAFAGEASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL LR +S Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLRELS 204 >gi|15891225|ref|NP_356897.1| Holliday junction DNA helicase motor protein [Agrobacterium tumefaciens str. C58] gi|22001979|sp|Q8U9K5|RUVA_AGRT5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15159588|gb|AAK89682.1| Holliday junction DNA helicase RuvA [Agrobacterium tumefaciens str. C58] Length = 205 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG+IE + DYVL+DV GVCY+ YC RTLS +G +G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGSIEEIGADYVLVDVHGVCYVAYCSARTLSKIGSVGEAVVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S L+R+WF LLQSVQGVG++VA+ VLS ++ +EL +I LQ+ +I++ PGI K+ Sbjct: 61 FGFVSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKTMISRAPGIGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TEL+ KA + + + + + S P +A+SAL NLGY +DQA A Sbjct: 121 AVRLVTELRNKAPAFAGDASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL L+ +S Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204 >gi|222149652|ref|YP_002550609.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4] gi|254766936|sp|B9JRI6|RUVA_AGRVS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221736634|gb|ACM37597.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4] Length = 205 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + +D+VL+DV GVCY+ +C RTL+ LG G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGDDHVLVDVHGVCYVAHCSSRTLARLGSPGEAIVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S L+R+WF LLQSVQGVGA+VA+ +L+ +T +EL +I LQ+ IA+ PG+ K+ Sbjct: 61 FGFMSALEREWFNLLQSVQGVGAKVALAILATLTPSELANAIALQDKPAIARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK KA + + + + + S P +A+SAL NLGY +DQA A Sbjct: 121 ALRLVTELKNKAPAFTGDAGSAIGLKQELGEGVASAP--VSDAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + LK AD +++IRL L+ +S Sbjct: 179 IAAALKNGGEGADSAKLIRLGLKELS 204 >gi|150397836|ref|YP_001328303.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419] gi|166200266|sp|A6UCT8|RUVA_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150029351|gb|ABR61468.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419] Length = 205 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 140/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+V++DV GV Y+ +C RTL+ LG+ G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLAKLGRAGEAAVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T EL +I LQ+ I++ PG+ K+ Sbjct: 61 FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + + + + P +A+SAL NLGY +DQA A Sbjct: 121 AVRIVTELKNKAPAFVGEMAPSIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK AD +++IRL L+ +S Sbjct: 179 VAAALKNGGEGADSARLIRLGLKELS 204 >gi|227823320|ref|YP_002827292.1| Holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234] gi|254767382|sp|C3MIH6|RUVA_RHISN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|227342321|gb|ACP26539.1| holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234] Length = 205 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+V++DV GV Y+ YC RTL+ LG G+ LF+ET++R+DQ+RL Sbjct: 1 MIGKLKGTIDEIGEDFVVLDVHGVGYVAYCSARTLAKLGSAGEAAVLFIETYVREDQLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQ+VQGVG++VA+ +L+ +T EL +I LQ+ +A+ PG+ K+ Sbjct: 61 FGFLSALEREWFRLLQTVQGVGSKVALALLTTLTPGELANAIALQDKTSVARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + + + + + P +A+SAL NLGY +DQA A Sbjct: 121 AVRIVTELKNKAPAFAGEMSASIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL L+ ++ Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELA 204 >gi|86359072|ref|YP_470964.1| Holliday junction DNA helicase motor protein [Rhizobium etli CFN 42] gi|123751944|sp|Q2K4J9|RUVA_RHIEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|86283174|gb|ABC92237.1| holliday junction DNA helicase protein [Rhizobium etli CFN 42] Length = 204 Score = 187 bits (476), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 143/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DVQGVCY+ YC RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K + + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGEGADSAKLIRLGLKELA 203 >gi|299134170|ref|ZP_07027363.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2] gi|298590917|gb|EFI51119.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2] Length = 205 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 141/209 (67%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y++ C RTL L G+ L +ET++R+DQIRL Sbjct: 1 MIGKLKGLIDSYGEDYVVLDVQGVGYLVSCSARTLQALPSPGEAAVLSIETYVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VLS + ++L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+TELK KA + +SV V S V+ ++A P +AISALVNLGYGQ QA Sbjct: 121 AERIVTELKDKAPAFASVDPAVVHLASAVDDDRA-----PGPVRDAISALVNLGYGQPQA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ S + A+ +++IRL L+ ++ Sbjct: 176 AAAIASASRDAGEGAETTKLIRLGLKELA 204 >gi|190893294|ref|YP_001979836.1| holliday junction DNA helicase [Rhizobium etli CIAT 652] gi|229560121|sp|B3PYZ4|RUVA_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190698573|gb|ACE92658.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652] Length = 204 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 145/206 (70%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T +EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPSELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203 >gi|241206204|ref|YP_002977300.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860094|gb|ACS57761.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 204 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRTAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDNADSAKLIRLGLKELA 203 >gi|327194147|gb|EGE61017.1| holliday junction DNA helicase protein [Rhizobium etli CNPAF512] Length = 204 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203 >gi|209886413|ref|YP_002290270.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans OM5] gi|226698735|sp|B6JIZ6|RUVA_OLICO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209874609|gb|ACI94405.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans OM5] Length = 205 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 97/209 (46%), Positives = 142/209 (67%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y+++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGVIDSYGEDYVILDVQGVGYLVHCATRTLQALPSSGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VLS + ++L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+TELK KA + ++V V V+ ++A P +AISALVNLGYGQ QA Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDDRA-----PRPVKDAISALVNLGYGQPQA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ SV + A+ +Q+IRL L+ ++ Sbjct: 176 AAAIASVARDAGEGAETAQLIRLGLKELA 204 >gi|218671058|ref|ZP_03520729.1| Holliday junction DNA helicase RuvA [Rhizobium etli GR56] Length = 197 Score = 184 bits (466), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 94/200 (47%), Positives = 139/200 (69%), Gaps = 3/200 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ YC RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRL 200 V + +K AD +++IRL Sbjct: 178 VAAAMKTAGEGADSAKLIRL 197 >gi|115526757|ref|YP_783668.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris BisA53] gi|122294484|sp|Q07H96|RUVA_RHOP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115520704|gb|ABJ08688.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris BisA53] Length = 205 Score = 184 bits (466), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 97/212 (45%), Positives = 140/212 (66%), Gaps = 14/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L + G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDYVILDVQGVGYQVHCASRTLQALPQAGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS + ++L ++I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDLEREWFRLLQTVQGVGAKVALSVLSTLPPSDLADAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC------SMPSFAINAISALVNLGYGQ 174 A RI+TELK KA +S V+ AH+ S P +AISALVNLGYGQ Sbjct: 121 AERIVTELKDKAPGFAS--------VDPAVAHLSGAIEERSAPRPVADAISALVNLGYGQ 172 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 QA A+ + + + A +Q+I+L L+ +S Sbjct: 173 PQAAAAIAAAARSAGDAAQTAQLIKLGLKELS 204 >gi|209550796|ref|YP_002282713.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226698736|sp|B5ZP79|RUVA_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209536552|gb|ACI56487.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 204 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG + C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSADEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDDADSAKLIRLGLKELA 203 >gi|92118982|ref|YP_578711.1| Holliday junction DNA helicase RuvA [Nitrobacter hamburgensis X14] gi|91801876|gb|ABE64251.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter hamburgensis X14] Length = 206 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/207 (44%), Positives = 136/207 (65%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G L +ET++R+DQI+L Sbjct: 2 MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGAAAVLSIETYVREDQIKL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+WF LLQ+VQGVGARVA+ VL ++ +L +I L++ +A+ PG+ K+ Sbjct: 62 YGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLANAIALRDKASVARTPGVGPKV 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A RI+TELK KA + ++V D + V+ A P +AISALVNLGYGQ QAT Sbjct: 122 AERIVTELKDKAPAFANV---DPAVVHLAGAIDDARAPRPVRDAISALVNLGYGQPQATA 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + A+ +Q+IRL L+ ++ Sbjct: 179 AIAVASRSAGDDAETAQLIRLGLKELA 205 >gi|116253728|ref|YP_769566.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. viciae 3841] gi|122988385|sp|Q1MC53|RUVA_RHIL3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115258376|emb|CAK09479.1| putative Holliday junction DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 204 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSTGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS + EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLPPGELANAIALQDRTAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIGLKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +K AD +++IRL L+ ++ Sbjct: 178 IAAAMKTAGEGADSAKLIRLGLKELA 203 >gi|90426276|ref|YP_534646.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris BisB18] gi|122995259|sp|Q20X09|RUVA_RHOPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90108290|gb|ABD90327.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris BisB18] Length = 205 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 98/207 (47%), Positives = 137/207 (66%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L + G L +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDYVILDVQGVGYQVHCSARTLQALPQAGGAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS + +L +I L++ +A+ G+ K+ Sbjct: 61 FGFRSDLEREWFRLLQTVQGVGAKVALAVLSTLPPADLANAIALRDKAAVARTSGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A RI+TELK KA + +SV D + V A S P +AISALVNLGYGQ QA Sbjct: 121 AERIVTELKDKAPAFASV---DPAVVALSGALDERSAPRPVTDAISALVNLGYGQPQAAA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ S + A+ +Q+I+L L+ +S Sbjct: 178 AIASASRSAGEGAETAQLIKLGLKELS 204 >gi|304393330|ref|ZP_07375258.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130] gi|303294337|gb|EFL88709.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130] Length = 205 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 131/208 (62%), Gaps = 4/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DVQGV Y ++C RT+ L G+ L +ETH+R+ +I+L Sbjct: 1 MIGKLKGTVDSFGEDWVILDVQGVGYQVHCSTRTMGTLPAAGEAAQLAIETHVRETEIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +DL+R WF LLQ+VQGVGARVA+ +L +T E+ +I LQ+ +A+ PG+ K+ Sbjct: 61 YGFTADLERNWFRLLQNVQGVGARVALAILGTLTPGEIASAIALQDKATVARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A RI+ ELK KA +LS + +Q S A+ +A+SAL NLGY QA+ Sbjct: 121 AQRIVAELKDKAPALSG---DATGTIGLQQELGAGAASSAVQDAVSALTNLGYSSQQASA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AV L K + A + +IR+ L+ +S Sbjct: 178 AVKLALDKAGDDAPSATLIRMGLKELSS 205 >gi|192289700|ref|YP_001990305.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris TIE-1] gi|229560122|sp|B3QHS2|RUVA_RHOPT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|192283449|gb|ACE99829.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris TIE-1] Length = 205 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 136/207 (65%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A RI+TELK K +LS+V D + V A P +AISALVNLGYGQ QA Sbjct: 121 AERIVTELKDKVPALSAV---DPAVVKLSGAIDDNRAPRAVTDAISALVNLGYGQPQAAA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + + A+ +Q+I+L L+ +S Sbjct: 178 AVATASRTAGEDAETAQLIKLGLKELS 204 >gi|254504698|ref|ZP_05116849.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11] gi|222440769|gb|EEE47448.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11] Length = 205 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQALPRAGEAAVLFIETIVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R+WF +L +VQGVGA+VA+G+L + A+E+ +I L + I++ PG+ ++ Sbjct: 61 YGFAAEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKATISRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK KA L+S+ Q ++ ++ + P A+SAL NLGYGQ QA+ A Sbjct: 121 AERILSELKDKAPGLASIDQDTIAVSQTVADNVAARP--VAEAVSALTNLGYGQPQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ A +IRL L+ ++ Sbjct: 179 VAKAMQSAGEDATTETLIRLGLKELA 204 >gi|39934175|ref|NP_946451.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris CGA009] gi|81563776|sp|Q6NAT0|RUVA_RHOPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|39648023|emb|CAE26543.1| RuvA; Holliday branch migration protein [Rhodopseudomonas palustris CGA009] Length = 205 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 136/207 (65%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A RI+TELK K +LS+V D + V A P +AISALVNLGYGQ QA Sbjct: 121 AERIVTELKDKVPALSAV---DPAVVKLSGAIDDNRAPRAVADAISALVNLGYGQPQAAA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + + A+ +Q+I+L L+ +S Sbjct: 178 AVATASRTAGEDAETAQLIKLGLKELS 204 >gi|15966503|ref|NP_386856.1| Holliday junction DNA helicase motor protein [Sinorhizobium meliloti 1021] gi|307300460|ref|ZP_07580240.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C] gi|307318325|ref|ZP_07597760.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83] gi|20455253|sp|Q92M91|RUVA_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15075774|emb|CAC47329.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti 1021] gi|306896007|gb|EFN26758.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83] gi|306904626|gb|EFN35210.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C] Length = 205 Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 138/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+V++DV GV Y+ +C RTL LG G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLGKLGSAGEAAVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T EL +I LQ+ I++ PG+ K+ Sbjct: 61 FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + S + + K++ + +A+SAL NLGY +DQA A Sbjct: 121 AVRIVTELKNKAPAFSGEMAPSIGL--KQELGEGVAAAPVADAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL L+ +S Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204 >gi|146338241|ref|YP_001203289.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. ORS278] gi|166230522|sp|A4YMC6|RUVA_BRASO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146191047|emb|CAL75052.1| Holliday junction DNA helicase ruvA [Bradyrhizobium sp. ORS278] Length = 205 Score = 177 bits (450), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 92/207 (44%), Positives = 136/207 (65%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK++G I+ ED+V+IDV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLRGLIDSYAEDFVIIDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VL + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLGNAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A RI+TELK KA + ++V D V A P +AISAL+NLGYGQ QA Sbjct: 121 AERIVTELKDKAPAFANV---DPGVVRLSGAIEESRAPQPVADAISALINLGYGQPQAAA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + + A+ +Q+IRL L+ ++ Sbjct: 178 AIAAASRAAGDKAETAQLIRLGLKELA 204 >gi|148258116|ref|YP_001242701.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. BTAi1] gi|166230521|sp|A5ERK1|RUVA_BRASB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146410289|gb|ABQ38795.1| Holliday junction DNA helicase subunit RuvA [Bradyrhizobium sp. BTAi1] Length = 205 Score = 177 bits (449), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 135/207 (65%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYAEDFVILDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VL + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A RI+TELK KA + + V D + A P +AISAL+NLGYGQ QA Sbjct: 121 AERIVTELKDKAPAFADV---DPGVIRLSGAIEDSRAPQPIADAISALINLGYGQPQAAA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + + A+ +Q+IRL L+ ++ Sbjct: 178 AIAAASRAAGDKAETAQLIRLGLKELA 204 >gi|316932642|ref|YP_004107624.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris DX-1] gi|315600356|gb|ADU42891.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris DX-1] Length = 205 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/207 (45%), Positives = 136/207 (65%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGVIDSYGEDYVILDVHGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A RI+TELK K +LS+V D + V+ A + P +AISALVNLGYGQ QA Sbjct: 121 AERIVTELKDKVPALSNV---DPAVVHLSGAIDDNTAPRAVADAISALVNLGYGQPQAAA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + + A +Q+I+L L+ +S Sbjct: 178 AVAAASRSAGEDAATAQLIKLGLKELS 204 >gi|85714394|ref|ZP_01045382.1| Holliday junction DNA helicase motor protein [Nitrobacter sp. Nb-311A] gi|85698841|gb|EAQ36710.1| Holliday junction DNA helicase motor protein [Nitrobacter sp. Nb-311A] Length = 205 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/209 (45%), Positives = 138/209 (66%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQSVQGVGARVA+ VL ++ +L ++ L++ +A+ PG+ K+ Sbjct: 61 FGFRTDHEREWFRLLQSVQGVGARVALAVLGTLSPADLASAVALRDKASVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+TELK KA S ++V V + V+ +A P +AISALVNLGYGQ QA Sbjct: 121 AERIVTELKDKAPSFANVDPAVVHLVGAVDDRRA-----PGPVTDAISALVNLGYGQPQA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 T A+ + + A+ +Q+IRL L+ ++ Sbjct: 176 TAAIAAAARGAGENAETAQLIRLGLKELA 204 >gi|75676909|ref|YP_319330.1| Holliday junction DNA helicase motor protein [Nitrobacter winogradskyi Nb-255] gi|90135442|sp|Q3SP13|RUVA_NITWN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|74421779|gb|ABA05978.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter winogradskyi Nb-255] Length = 205 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 97/212 (45%), Positives = 136/212 (64%), Gaps = 14/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G L +ET++R+DQI+L Sbjct: 1 MIGKLKGVIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGQAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQGVGARVA+ VL ++ +L +I L++ +A+ PGI K+ Sbjct: 61 FGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLASAIALRDKASVARTPGIGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS------MPSFAINAISALVNLGYGQ 174 A RI+TELK KA S ++V D + V H+ P +AISALVNLGYGQ Sbjct: 121 AERIVTELKDKAPSFANV---DPTVV-----HLAGDLDDQRAPRPVRDAISALVNLGYGQ 172 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 QAT A+ + + A+ +Q+IRL L+ +S Sbjct: 173 PQATAAIAAASRGAGENAETAQLIRLGLKELS 204 >gi|154246996|ref|YP_001417954.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus Py2] gi|229560140|sp|A7IJV4|RUVA_XANP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154161081|gb|ABS68297.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus Py2] Length = 205 Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ L ED+V++DV GV Y+++C RTLS L + G+ LF+ETH+R+DQIRL Sbjct: 1 MIGKLKGVVDTLEEDHVILDVHGVGYLVHCSGRTLSALPRAGEAAALFIETHVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R WF LLQ +QG+G + A+ VLS ++A+EL ++I L + +A+ PG+ ++ Sbjct: 61 FGFSSAAERDWFRLLQGIQGIGTKTALAVLSTLSASELTQAIALGDKTTVARAPGVGPRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+TELK K S+ + ++ + A +A+SALVNLGYG QA A Sbjct: 121 ATRIITELKDKMPGFSA--SEPLAAQLGGGGVASAQGGAAADAVSALVNLGYGVPQANAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + L+ A +IRL L+ ++ Sbjct: 179 IAAALRGAGEGAKTEVLIRLGLKELA 204 >gi|260467057|ref|ZP_05813237.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum WSM2075] gi|259029166|gb|EEW30462.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 135/207 (65%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ L+D+ GV Y+ YC RTL+ L G+ LF+ET++R+D +RL Sbjct: 1 MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60 Query: 61 FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R+WF +L+ +V GVGA+VA+ +LS +T +L +I L++ ++++ PG+ K Sbjct: 61 YGFQSQLEREWFRLLMNNVPGVGAKVALAILSTLTPADLANAIALRDIAMVSRAPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + K++ P+ +A+SALVNLGY +D A Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGL--KQELGDGVAPAPITDAVSALVNLGYSRDTAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD S++IR L+ ++ Sbjct: 179 AVSAALKTAGEDADASKLIRFGLKELA 205 >gi|153008543|ref|YP_001369758.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC 49188] gi|166230577|sp|A6WY75|RUVA_OCHA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151560431|gb|ABS13929.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 140/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG +G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGVGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204 >gi|27376647|ref|NP_768176.1| Holliday junction DNA helicase RuvA [Bradyrhizobium japonicum USDA 110] gi|44888480|sp|Q89U81|RUVA_BRAJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|27349788|dbj|BAC46801.1| holliday junction DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 205 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDFVILDVGGVGYQVHCSTRTLQHLPSPGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQGVGA+VA+ VL + ++L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDQEREWFRLLQTVQGVGAKVALAVLGTLAPSDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+TELK KA + ++V V V+ ++A P +AISALVNLGYGQ QA Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDQRA-----PRPVADAISALVNLGYGQPQA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ S + A+ +Q+IRL L+ ++ Sbjct: 176 AAAIASASRSAGEGAETAQLIRLGLKELA 204 >gi|162138516|ref|YP_487870.2| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris HaA2] Length = 205 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/209 (44%), Positives = 135/209 (64%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA---HICSMPSFAINAISALVNLGYGQDQA 177 A RI+TELK K +L +V D + V+ A H P +AISALVNLGYGQ QA Sbjct: 121 AERIVTELKDKVPALGNV---DPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + + A +Q+I+L L+ +S Sbjct: 176 AAAIAAASRAAGDDAATAQLIKLGLKELS 204 >gi|86574402|gb|ABD08959.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris HaA2] Length = 222 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/209 (44%), Positives = 135/209 (64%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 18 MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 77 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 78 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 137 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA---HICSMPSFAINAISALVNLGYGQDQA 177 A RI+TELK K +L +V D + V+ A H P +AISALVNLGYGQ QA Sbjct: 138 AERIVTELKDKVPALGNV---DPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQA 192 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + + A +Q+I+L L+ +S Sbjct: 193 AAAIAAASRAAGDDAATAQLIKLGLKELS 221 >gi|256370112|ref|YP_003107623.1| Holliday junction DNA helicase motor protein [Brucella microti CCM 4915] gi|306844695|ref|ZP_07477280.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1] gi|256000275|gb|ACU48674.1| Holliday junction DNA helicase motor protein [Brucella microti CCM 4915] gi|306274867|gb|EFM56637.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1] Length = 205 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204 >gi|254719706|ref|ZP_05181517.1| Holliday junction DNA helicase RuvA [Brucella sp. 83/13] gi|265984721|ref|ZP_06097456.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. 83/13] gi|306837835|ref|ZP_07470697.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653] gi|264663313|gb|EEZ33574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. 83/13] gi|306407074|gb|EFM63291.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653] Length = 205 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204 >gi|17986616|ref|NP_539250.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str. 16M] gi|23502561|ref|NP_698688.1| Holliday junction DNA helicase RuvA [Brucella suis 1330] gi|62290575|ref|YP_222368.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 1 str. 9-941] gi|82700491|ref|YP_415065.1| Holliday junction DNA helicase RuvA [Brucella melitensis biovar Abortus 2308] gi|148560383|ref|YP_001259556.1| Holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840] gi|161619632|ref|YP_001593519.1| Holliday junction DNA helicase motor protein [Brucella canis ATCC 23365] gi|163845283|ref|YP_001622938.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445] gi|189024793|ref|YP_001935561.1| Holliday junction DNA helicase RuvA [Brucella abortus S19] gi|225628272|ref|ZP_03786306.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo] gi|225853159|ref|YP_002733392.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC 23457] gi|237816080|ref|ZP_04595076.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A] gi|254689871|ref|ZP_05153125.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 6 str. 870] gi|254694364|ref|ZP_05156192.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 3 str. Tulya] gi|254698022|ref|ZP_05159850.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 2 str. 86/8/59] gi|254700364|ref|ZP_05162192.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 5 str. 513] gi|254703482|ref|ZP_05165310.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 3 str. 686] gi|254708429|ref|ZP_05170257.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis M163/99/10] gi|254708717|ref|ZP_05170528.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis B2/94] gi|254714564|ref|ZP_05176375.1| Holliday junction DNA helicase RuvA [Brucella ceti M644/93/1] gi|254717461|ref|ZP_05179272.1| Holliday junction DNA helicase RuvA [Brucella ceti M13/05/1] gi|254730906|ref|ZP_05189484.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 4 str. 292] gi|256030243|ref|ZP_05443857.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis M292/94/1] gi|256045313|ref|ZP_05448207.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str. Rev.1] gi|256061740|ref|ZP_05451877.1| Holliday junction DNA helicase RuvA [Brucella neotomae 5K33] gi|256114271|ref|ZP_05455016.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 3 str. Ether] gi|256255624|ref|ZP_05461160.1| Holliday junction DNA helicase RuvA [Brucella ceti B1/94] gi|256258125|ref|ZP_05463661.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 9 str. C68] gi|256263350|ref|ZP_05465882.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 2 str. 63/9] gi|260167918|ref|ZP_05754729.1| Holliday junction DNA helicase RuvA [Brucella sp. F5/99] gi|260547181|ref|ZP_05822919.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038] gi|260565796|ref|ZP_05836279.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. 16M] gi|260568788|ref|ZP_05839256.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40] gi|260755403|ref|ZP_05867751.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 6 str. 870] gi|260758625|ref|ZP_05870973.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 4 str. 292] gi|260762457|ref|ZP_05874794.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 2 str. 86/8/59] gi|260884418|ref|ZP_05896032.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 9 str. C68] gi|261214674|ref|ZP_05928955.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 3 str. Tulya] gi|261219293|ref|ZP_05933574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M13/05/1] gi|261222827|ref|ZP_05937108.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti B1/94] gi|261315928|ref|ZP_05955125.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M163/99/10] gi|261316209|ref|ZP_05955406.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis B2/94] gi|261322354|ref|ZP_05961551.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M644/93/1] gi|261325744|ref|ZP_05964941.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella neotomae 5K33] gi|261750859|ref|ZP_05994568.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 5 str. 513] gi|261754112|ref|ZP_05997821.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 3 str. 686] gi|261757357|ref|ZP_06001066.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. F5/99] gi|265987271|ref|ZP_06099828.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M292/94/1] gi|265991738|ref|ZP_06104295.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. Rev.1] gi|265995575|ref|ZP_06108132.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 3 str. Ether] gi|294850954|ref|ZP_06791630.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026] gi|297248974|ref|ZP_06932682.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str. B3196] gi|54039571|sp|P66743|RUVA_BRUSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042200|sp|P66742|RUVA_BRUME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|75496341|sp|Q57BH7|RUVA_BRUAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123740945|sp|Q2YRD1|RUVA_BRUA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230523|sp|A5VS59|RUVA_BRUO2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045743|sp|A9M7K1|RUVA_BRUC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045744|sp|A9WWI0|RUVA_BRUSI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560007|sp|B2S7E0|RUVA_BRUA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766948|sp|C0REW6|RUVA_BRUMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|17982229|gb|AAL51514.1| holliday junction DNA helicase ruva [Brucella melitensis bv. 1 str. 16M] gi|23348562|gb|AAN30603.1| Holliday junction DNA helicase RuvA [Brucella suis 1330] gi|62196707|gb|AAX75007.1| RuvA, Holliday junction DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82616592|emb|CAJ11671.1| Bacterial DNA recombination protein, RuvA:Helix-hairpin-helix DNA-binding, class 1 [Brucella melitensis biovar Abortus 2308] gi|148371640|gb|ABQ61619.1| holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840] gi|161336443|gb|ABX62748.1| Holliday junction DNA helicase RuvA [Brucella canis ATCC 23365] gi|163676006|gb|ABY40116.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445] gi|189020365|gb|ACD73087.1| Bacterial DNA recombination protein, RuvA [Brucella abortus S19] gi|225616118|gb|EEH13166.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo] gi|225641524|gb|ACO01438.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC 23457] gi|237788743|gb|EEP62955.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A] gi|260095546|gb|EEW79424.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038] gi|260151169|gb|EEW86264.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. 16M] gi|260154172|gb|EEW89254.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40] gi|260668943|gb|EEX55883.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 4 str. 292] gi|260672883|gb|EEX59704.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 2 str. 86/8/59] gi|260675511|gb|EEX62332.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 6 str. 870] gi|260873946|gb|EEX81015.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 9 str. C68] gi|260916281|gb|EEX83142.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 3 str. Tulya] gi|260921411|gb|EEX88064.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti B1/94] gi|260924382|gb|EEX90950.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M13/05/1] gi|261295044|gb|EEX98540.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M644/93/1] gi|261295432|gb|EEX98928.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis B2/94] gi|261301724|gb|EEY05221.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella neotomae 5K33] gi|261304954|gb|EEY08451.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M163/99/10] gi|261737341|gb|EEY25337.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. F5/99] gi|261740612|gb|EEY28538.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 5 str. 513] gi|261743865|gb|EEY31791.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 3 str. 686] gi|262766859|gb|EEZ12477.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 3 str. Ether] gi|263002694|gb|EEZ15097.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. Rev.1] gi|263093349|gb|EEZ17418.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 2 str. 63/9] gi|264659468|gb|EEZ29729.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M292/94/1] gi|294821597|gb|EFG38593.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026] gi|297174107|gb|EFH33464.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str. B3196] gi|326409716|gb|ADZ66781.1| Bacterial DNA recombination protein, RuvA [Brucella melitensis M28] gi|326539423|gb|ADZ87638.1| holliday junction DNA helicase RuvA [Brucella melitensis M5-90] Length = 205 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKETGEGADSAKLIRLGLKELS 204 >gi|306841422|ref|ZP_07474124.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2] gi|306288528|gb|EFM59880.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2] Length = 205 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204 >gi|91978630|ref|YP_571289.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris BisB5] gi|123735096|sp|Q130V1|RUVA_RHOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91685086|gb|ABE41388.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris BisB5] Length = 205 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDYVILDVHGVGYQVHCSSRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDHEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSV---VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI++ELK K +LS+V V Q ++ +A P +AISALVNLGYGQ QA Sbjct: 121 AERIVSELKDKVPALSNVDPAVVQLSGALDDNRA-----PRPVTDAISALVNLGYGQPQA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + + A +Q+I+L L+ +S Sbjct: 176 AAAIAAAARAAGDDAATAQLIKLGLKELS 204 >gi|118588334|ref|ZP_01545743.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM 12614] gi|118439040|gb|EAV45672.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM 12614] Length = 205 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQGLPRPGEAAVLFIETIVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+WF +L +VQGVGA+VA+G+L + A+E+ +I L + VI++ PG+ ++ Sbjct: 61 YGFGIEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKAVISRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK KA L++V Q ++ ++ + P A+SAL NLGY Q QA+ A Sbjct: 121 AERIISELKDKAPGLATVDQGTIAVSQTIADNVAARP--VAEAVSALTNLGYAQAQASGA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L+ A +IRL L+ ++ Sbjct: 179 VAKALQSAGEDATTETLIRLGLKELA 204 >gi|182677007|ref|YP_001831153.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp. indica ATCC 9039] gi|229560003|sp|B2IAW4|RUVA_BEII9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|182632890|gb|ACB93664.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 89/208 (42%), Positives = 133/208 (63%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ ED+V++DVQGV YI++C RTL L K G L +E +R+D IRL Sbjct: 1 MIGKLTGLVDSQGEDHVILDVQGVGYIVFCSSRTLRLLPKPGASTALLIEMQVREDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+++R WF LLQSVQGVGA+VA+ + ++ATEL ++I LQ+ + + PG+ K+ Sbjct: 61 FGFPSEVERDWFRLLQSVQGVGAKVALALQGLLSATELAQAIALQDKASLGRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A+R++TELK K +L V + ++ E + P A +AI+ALVNLGYG+ QA Sbjct: 121 AARLITELKDKMPALGPVDSLTAKLTIAEAE----GTAPVAAQDAITALVNLGYGRPQAA 176 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + L+ A + +IR L+ ++ Sbjct: 177 AAVATSLEALGETAPLADLIRRGLKELA 204 >gi|296447311|ref|ZP_06889239.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium OB3b] gi|296255176|gb|EFH02275.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium OB3b] Length = 204 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 133/207 (64%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ +D+V++DVQGV Y+++C RTL L + G+ +L +ET +R+D IRL Sbjct: 1 MIGKLKGVVDSYGDDFVILDVQGVGYVVHCSTRTLQKLPRAGEAASLAIETQVREDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R WF LLQSVQGVGA+VA+ +LS + EL +I Q+ ++A+ G+ K+ Sbjct: 61 FGFSADAERDWFRLLQSVQGVGAKVALAILSILGPGELASAIAGQDKAMVARASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + +++ D + S P A +AISALVNLGYG+ QA A Sbjct: 121 AARIVAELKDKAPAFAAL---DPALARLSGETEASAPQAAQDAISALVNLGYGRPQAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V + LK AD +IR L+ ++ Sbjct: 178 VAASLKALGESADTGALIRRGLKELAS 204 >gi|239832790|ref|ZP_04681119.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG 3301] gi|239825057|gb|EEQ96625.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYAAFCSARTLGNLGGAGEAAVLFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204 >gi|170746561|ref|YP_001752821.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans JCM 2831] gi|229560103|sp|B1M6A3|RUVA_METRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170653083|gb|ACB22138.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans JCM 2831] Length = 205 Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 132/207 (63%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV YI++C RTL + K+G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGVVDSFGEDFVILDVSGVGYIVHCSARTLQRMPKVGEPAELSIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVGARVA+GVLS + L +I + I++ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGARVALGVLSVLEPEALASAIATGDKGSISRAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A+R+ ELK KA + + V D + V A + P +A+SALVNLGY Q QA Sbjct: 121 AARLAAELKDKAPAFAPV---DPALVALAGAVEEGAAPQPVADAVSALVNLGYPQVQAAA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + LK A+ +IRL LR ++ Sbjct: 178 AIAAALKGAGEGAEAKVLIRLGLRELA 204 >gi|323138242|ref|ZP_08073314.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242] gi|322396494|gb|EFX99023.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242] Length = 205 Score = 171 bits (432), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y+++C RTL L + G+ L +ET +R+D IRL Sbjct: 1 MIGKLKGLIDSYGEDFVILDVNGVGYVVHCSSRTLQKLPRAGEAAALAIETQVREDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++++R WF LLQ+VQGVGA+VA+G+LS ++++E+ +I Q+ ++A+ PG+ K+ Sbjct: 61 FGFEAEVERDWFRLLQTVQGVGAKVALGILSILSSSEIASAIATQDKAMVARAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + + V ++ + E A S PS +AISALVNLGYG+ QA A Sbjct: 121 AARIVAELKDKAPAFGA-VDPVVAKLAGEDAD-ASAPSAVRDAISALVNLGYGRPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K A+ +IR LR ++ Sbjct: 179 VAASVKALGEGAETGALIRQGLRELA 204 >gi|220921373|ref|YP_002496674.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS 2060] gi|254767374|sp|B8IM27|RUVA_METNO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219945979|gb|ACL56371.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS 2060] Length = 205 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L +G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGVVDSYGEDFVILDVHGVGYVVHCSARTLQRLPPVGEAADLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+GVLS + +L +I + IA+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPADLATAIATGDKGAIARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + V + + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPVDPALIRLAGAVEERTAPQP--VADAISALVNLGYPQIQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + L+ A+ +IRL LR ++ Sbjct: 179 VAAALQGAGEGAEAKTLIRLGLRELA 204 >gi|13473339|ref|NP_104906.1| Holliday junction DNA helicase RuvA [Mesorhizobium loti MAFF303099] gi|20455256|sp|Q98F75|RUVA_RHILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|14024088|dbj|BAB50692.1| Holliday branch migration protein; RuvA [Mesorhizobium loti MAFF303099] Length = 206 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 134/207 (64%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ L+D+ GV Y+ YC RTL+ L G+ LF+ET++R+D +RL Sbjct: 1 MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60 Query: 61 FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R+WF +LL +V GVGA+VA+ +LS + +L +I L++ ++++ PG+ K Sbjct: 61 YGFQSALEREWFRLLLNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + K++ P+ +A+SALVNLGY +D A Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGL--KQELGEGVAPAPITDAVSALVNLGYSRDTAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD S++IR L+ ++ Sbjct: 179 AVAAALKTAGEDADASKLIRFGLKELA 205 >gi|188580172|ref|YP_001923617.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001] gi|229560102|sp|B1Z924|RUVA_METPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|179343670|gb|ACB79082.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001] Length = 208 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/209 (42%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+GVLS + +L +I + +A+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + V ++ + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPVDPALVALTGAVEDRTAPQP--VADAISALVNLGYPQVQASAA 178 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 + + LK + A+ + +IRL LR ++ Sbjct: 179 IAAALKGLGDGAETVEAKTLIRLGLRELA 207 >gi|158422139|ref|YP_001523431.1| Holliday junction DNA helicase RuvA [Azorhizobium caulinodans ORS 571] gi|172048036|sp|A8IM99|RUVA_AZOC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158329028|dbj|BAF86513.1| DNA recombination protein [Azorhizobium caulinodans ORS 571] Length = 206 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 135/206 (65%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED++++DV GV Y+++C RTL L ++G+ LF+ETH+R+DQIRL Sbjct: 1 MIGKLKGTVDSFGEDHLILDVHGVGYLVHCSGRTLQALPRVGEAAVLFIETHVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+++ +R+WF LLQ +QG+G + A+ +LS + ++L +++ L + +A+ G+ ++ Sbjct: 61 FGFVTEAEREWFRLLQGIQGIGTKTALAILSTLKPSDLAQAVALGDKTALARANGVGPRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+TELK K + ++ +A + + A +A+SALVNLGYGQ QA TA Sbjct: 121 ATRIVTELKDKVPAFTAADPGLARLAADVEATEAAGGALA-DAVSALVNLGYGQAQAHTA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +K A +IRL L+ ++ Sbjct: 180 IAAAGRKAGEDATTETLIRLGLKELA 205 >gi|83308729|emb|CAJ01639.1| holliday junction dna helicase, ruvA [Methylocapsa acidiphila] Length = 204 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 130/206 (63%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK++G ++ ED+V++DV GV YI++C RTL L ++G+ +L +ET MR+D +RL Sbjct: 1 MIGKLRGVVDSFGEDFVILDVNGVGYIVHCSSRTLQRLSRVGELASLAIETQMREDSLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ DR WF LLQSVQGVGA+VA+ V + A+EL +I Q+ IA+ G+ K+ Sbjct: 61 FGFSTEADRDWFKLLQSVQGVGAKVALAVQGILEASELAAAIAFQDKAAIARASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + ++ E A + P+ +AISALV LGYG+ QA A Sbjct: 121 AARIVAELKDKAPAAGGA---EVHLQAAEGASGQAAPTAVTDAISALVTLGYGRPQAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A +++IR L+ +S Sbjct: 178 VAASVAALGEGAATAELIRRGLKELS 203 >gi|307944538|ref|ZP_07659878.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4] gi|307772287|gb|EFO31508.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4] Length = 205 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ D+V+IDV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTIDSYGGDHVIIDVHGVGYQVHCPSRILQSLPRAGEAAVLFIETVVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+WF LL +VQGVGA+VA+G+L + A+E+ +I L + I + PG+ ++ Sbjct: 61 FGFGDEAEREWFRLLTTVQGVGAKVALGILGILKASEIANAIALSDKATITRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK KA S +SV ++ + + P A+SAL NLGYGQ QA A Sbjct: 121 AERILSELKDKAPSYASVDDATVAVSQSVSDDVAARP--VAEAVSALTNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ A +IRL L+ ++ Sbjct: 179 VARAVQSAGEDATTETLIRLGLKELA 204 >gi|254473163|ref|ZP_05086561.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062] gi|211957884|gb|EEA93086.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062] Length = 204 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ +D+VL+DVQGVCY ++CP R L L ++G+ L +ET +R+D I+L Sbjct: 1 MIGKLKGVVDSYGDDFVLLDVQGVCYQVHCPSRVLQQLPRVGEAAVLAIETMVREDMIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R+WF +L +VQGVGA+VA+G+L + A+E+ +I L + I + PG+ ++ Sbjct: 61 FGFAEDSEREWFRILMTVQGVGAKVALGILGIMKASEVANAIALGDKTAITRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + +SV ++ ++ S P +A+SAL NLGY QA+ A Sbjct: 121 AERIVTELKDKAPAFASVEDDTIAVSQSVAENVASRP--VADAVSALSNLGYQPAQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K A ++IRL L+ ++ Sbjct: 179 VAAAVKTAGEDASAEKLIRLGLKELA 204 >gi|319781019|ref|YP_004140495.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166907|gb|ADV10445.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 132/207 (63%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ L+D+ GV Y+ YC RTL+ L G+ LF+ET++R+D +RL Sbjct: 1 MIGKLKGTLDEVDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60 Query: 61 FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R+WF +L+ +V GVGA+VA+ +LS + +L +I L++ ++++ PG+ K Sbjct: 61 YGFQSVLEREWFRLLMNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + + + S P +A+SALVNLGY +D A Sbjct: 121 VAERIVTELKNKAPAYAGTASGTIGLKQELGDGVASAP--ITDAVSALVNLGYSRDTAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD ++IR L+ ++ Sbjct: 179 AVAAALKTAGEDADAPKLIRFGLKELA 205 >gi|328542537|ref|YP_004302646.1| Holliday junction ATP-dependent DNA helicase ruvA [polymorphum gilvum SL003B-26A1] gi|326412283|gb|ADZ69346.1| Holliday junction ATP-dependent DNA helicase ruvA [Polymorphum gilvum SL003B-26A1] Length = 205 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 125/206 (60%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDHVVLDVHGVGYQVHCPSRVLQGLPRTGEAAVLFIETLVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+WF LL +VQGVGA+VA+ VL + A E+ +I L + I++ PG+ ++ Sbjct: 61 YGFAQEAEREWFRLLMTVQGVGAKVALAVLGVLKAGEIANAIALGDKATISRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +S+ ++ + + P A+SAL NLGY Q QA+ A Sbjct: 121 AERILAELKDKAPGYASIDADTLAVAQAVGDDVAARP--VAEAVSALTNLGYAQPQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V LK A +IRL LR ++ Sbjct: 179 VARALKAAGEAATTETLIRLGLRELA 204 >gi|256160418|ref|ZP_05458107.1| Holliday junction DNA helicase RuvA [Brucella ceti M490/95/1] gi|265998786|ref|ZP_06111343.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M490/95/1] gi|262553475|gb|EEZ09244.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M490/95/1] Length = 193 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 130/195 (66%), Gaps = 2/195 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDS 195 V + LK+ AD + Sbjct: 179 VAAALKETGEGADSA 193 >gi|298293003|ref|YP_003694942.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506] gi|296929514|gb|ADH90323.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506] Length = 205 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 136/207 (65%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L G+ TLF+ET +R+D IRL Sbjct: 1 MIGKLKGIVDSYVEDHVILDVHGVGYLVHCSARTLQQLPSPGEAATLFIETFVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ WF LLQ+VQGVGA+VA+ VLS ++ +EL ++ L + ++A+ G+ K+ Sbjct: 61 YGFASPAEKAWFTLLQNVQGVGAKVALSVLSVLSPSELANAVALGDRAMVARANGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK-EQAHICSMPSFAINAISALVNLGYGQDQATT 179 A+RI+ ELK KA + + + E+ H P+ +A+SALVNLGY Q QA+ Sbjct: 121 AARIVAELKDKAPGFADIDPAVAGLAAQIEERH---APAPVADAVSALVNLGYAQIQASA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + +++ AD +++IRL L+ ++ Sbjct: 178 AVAAAMREAGEGADAARLIRLGLKELA 204 >gi|319406256|emb|CBI79893.1| holliday junction DNA helicase RuvA [Bartonella sp. AR 15-3] Length = 214 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/213 (39%), Positives = 142/213 (66%), Gaps = 12/213 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ +EL ++I L ++ +I++ PG+ K+ Sbjct: 61 FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVSELSQAITLNDTAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQD---MSCVN--KEQAHICSMPSFAINAISALVNLGYGQD 175 + RI++ELK K + LS ++ S +N E+ H P+ +A+ AL+ LG+ D Sbjct: 121 SERIVSELKSKTL-LSKEDNKNPALSSSLNFSSEEKH---QPTH--DALLALIKLGFDHD 174 Query: 176 QATTAVVSVLKKEK-NIADDSQIIRLALRAISC 207 +ATTA+ S L K + + ++R +LR +S Sbjct: 175 KATTALASALSALKGEMISSALLVRHSLRLLSS 207 >gi|163850397|ref|YP_001638440.1| Holliday junction DNA helicase motor protein [Methylobacterium extorquens PA1] gi|218528957|ref|YP_002419773.1| Holliday junction DNA helicase RuvA [Methylobacterium chloromethanicum CM4] gi|240137474|ref|YP_002961945.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens AM1] gi|229560101|sp|A9W1B3|RUVA_METEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766970|sp|B7L255|RUVA_METC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163662002|gb|ABY29369.1| Holliday junction DNA helicase RuvA [Methylobacterium extorquens PA1] gi|218521260|gb|ACK81845.1| Holliday junction DNA helicase RuvA [Methylobacterium chloromethanicum CM4] gi|240007442|gb|ACS38668.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens AM1] Length = 208 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R+WF LLQ+VQGVG RVA+GVLS + +L +I + +A+ PG+ ++ Sbjct: 61 YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + + ++ + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTAPQP--VADAISALVNLGYAQIQASAA 178 Query: 181 VVSVLK---KEKNIADDSQIIRLALRAIS 206 + + LK +E + +IRL LR ++ Sbjct: 179 IAAALKGLGEEAGTVEAKTLIRLGLRELA 207 >gi|90418966|ref|ZP_01226877.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas manganoxydans SI85-9A1] gi|90337046|gb|EAS50751.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas manganoxydans SI85-9A1] Length = 206 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 134/206 (65%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+V++DV GV Y+ +C RTL+ L G+ LF++T++R+D +RL Sbjct: 1 MIGKLKGTVDEIGEDHVVVDVHGVGYVAFCGARTLAALPGEGEAVVLFIDTYVREDMLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ WF LLQ VQGVGARVA+ V+ ++A +L ++ LQ+ ++A+ PG+ K+ Sbjct: 61 YGFATRAEQDWFRLLQMVQGVGARVALAVIGTLSAGDLANAVALQDKAMVARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + S D S K + + +A+SALVNLGY +DQA A Sbjct: 121 AARIVAELKDKAPAFSG-AGSDESLGLKRDIGGGTAAAPVADAVSALVNLGYPRDQAAEA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V LK D +++IRL L+A+S Sbjct: 180 VAKALKDAGEAPDSAKLIRLGLKALS 205 >gi|254559651|ref|YP_003066746.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens DM4] gi|254266929|emb|CAX22728.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens DM4] Length = 208 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R+WF LLQ+VQGVG RVA+GVLS + +L +I + +A+ PG+ ++ Sbjct: 61 YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + + ++ + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTAPQP--VADAISALVNLGYAQIQASAA 178 Query: 181 VVSVLK---KEKNIADDSQIIRLALRAIS 206 + + LK +E + +IRL LR ++ Sbjct: 179 IAAALKGLGEEAGAVEAKTLIRLGLRELA 207 >gi|319899376|ref|YP_004159473.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella clarridgeiae 73] gi|319403344|emb|CBI76903.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella clarridgeiae 73] Length = 213 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 137/212 (64%), Gaps = 11/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ +L ++I L + +I++ PG+ K+ Sbjct: 61 FGFTTKSEKEWFCLLQNVPGVGAKVALALLGTLSINDLSQAITLNDIAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM----SCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + RI++ELK KA+ LS + S + E+ H P+ +A+ AL+ LG+ DQ Sbjct: 121 SERIVSELKNKAL-LSKENNKSFAFSSSSLPSEEKH---QPTN--DALLALIKLGFDHDQ 174 Query: 177 ATTAVVSVLKKEK-NIADDSQIIRLALRAISC 207 A TAV S L K + ++R +L+ +S Sbjct: 175 AATAVTSALSSLKGETVSSALLVRHSLKLLSS 206 >gi|319407733|emb|CBI81380.1| holliday junction DNA helicase RuvA [Bartonella sp. 1-1C] Length = 215 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 139/218 (63%), Gaps = 21/218 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E ++ D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + I++ PG+ K+ Sbjct: 61 FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 + RI++ELK K + S ++D NK A S+ +F+ +A+ AL+ LG+ Sbjct: 121 SERIVSELKNKTLQFS---KED----NKNPAFSSSL-TFSSEEEYQPTNDALLALIKLGF 172 Query: 173 GQDQATTAV---VSVLKKEKNIADDSQIIRLALRAISC 207 D+ATTA+ VS LK E + ++R +L+ +S Sbjct: 173 DHDKATTALASAVSALKGE--TVSSALLVRHSLKLLSS 208 >gi|300023944|ref|YP_003756555.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans ATCC 51888] gi|299525765|gb|ADJ24234.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + E ++++DV GV Y + RTL L K GD TL ++TH+R+D IRL Sbjct: 1 MIGKLKGKVDAIGESFLIVDVHGVGYEVQASSRTLRNL-KPGDDVTLTIDTHVREDAIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ +R WF LQ++QGVGA+VA+ VL + E+ +++L N + + PG+ K+ Sbjct: 60 FGFQSEFERSWFRTLQTIQGVGAKVALSVLGVLGPQEIANAVVLGNWAAVEEAPGVGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA SL S+ + A + + A AISAL NLGY QA A Sbjct: 120 ALRIVAELKDKAPSL-SLAGLPATPGGGPAAAVAPVGLPAAEAISALTNLGYNPAQANQA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ AD + +I+ AL+ ++ Sbjct: 179 VALASRELGEAADTAALIKRALKELA 204 >gi|170739181|ref|YP_001767836.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46] gi|229560104|sp|B0UA56|RUVA_METS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|168193455|gb|ACA15402.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46] Length = 205 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 128/206 (62%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y ++C RTL L G+ L +ET +R+D IRL Sbjct: 1 MIGKLKGVVDSYGEDFVILDVHGVGYEVHCSARTLQRLPPAGEATDLAIETVVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+G+LS + EL +I + +A+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGLLSVLEPAELATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + V + +A P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPVDPALVRLAGAVEARTAPQP--VADAISALVNLGYPQAQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + L+ A+ +IRL LR ++ Sbjct: 179 VAAALQSAGAEAEAKTLIRLGLRELA 204 >gi|240851225|ref|YP_002972628.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup] gi|240268348|gb|ACS51936.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup] Length = 204 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 132/208 (63%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++L+DV GV Y+++ R L +G+ +LFVETH+R+D IRL Sbjct: 1 MIGKLKGTLEHIFDDHILLDVHGVGYVVFVSNRLRPSLPSVGEALSLFVETHVREDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFATRAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI+ ELK K + +Q + V+ Q + + P A +A+SAL+ LG+ ++ A+ A Sbjct: 121 SERIVGELKSKTLPF----EQAVKTVSVPQREMTNQP--AHDALSALMKLGFEREHASRA 174 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207 + + E + +IR +L+ +S Sbjct: 175 LALAMNALEGETVSSALLIRHSLKLLSS 202 >gi|163869137|ref|YP_001610376.1| Holliday junction DNA helicase RuvA [Bartonella tribocorum CIP 105476] gi|189045742|sp|A9IYK7|RUVA_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161018823|emb|CAK02381.1| holliday junction DNA helicase RuvA [Bartonella tribocorum CIP 105476] Length = 204 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 131/208 (62%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E ++EDY+++DV GV Y+++ R L +G+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGTLEHIFEDYIVLDVHGVGYVVFISNRLRPSLPSVGEALSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF +LQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFATRAEQEWFCMLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI+ ELK K + +Q + V+ Q I P A +A+SAL+ LG+ ++QA A Sbjct: 121 SERIVGELKSKTLPF----EQAVKTVSVPQREITHQP--AHDALSALMKLGFEREQAARA 174 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207 + + E + +IR +L+ +S Sbjct: 175 LALAMNALEGEAVSSALLIRHSLKLLSS 202 >gi|49474677|ref|YP_032719.1| Holliday junction DNA helicase motor protein [Bartonella quintana str. Toulouse] gi|81646802|sp|Q6FYP5|RUVA_BARQU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49240181|emb|CAF26647.1| Holliday junction DNA helicase ruvA [Bartonella quintana str. Toulouse] Length = 205 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 132/207 (63%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++++DVQGV Y+++ R L +G+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHVFDDHIIVDVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFVAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK KA+ + D + Q H+ +A+SALV LG+ +DQA A Sbjct: 121 SERIVSELKSKALPFN-----DNALHFTPQPHLEVTHQPTNDALSALVKLGFERDQAARA 175 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + + E + +IR +L+ +S Sbjct: 176 LALAMNALEGETVSSALLIRHSLKLLS 202 >gi|49476147|ref|YP_034188.1| Holliday junction DNA helicase motor protein [Bartonella henselae str. Houston-1] gi|81648457|sp|Q6G5R0|RUVA_BARHE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49238955|emb|CAF28253.1| Holliday junction DNA helicase ruvA [Bartonella henselae str. Houston-1] Length = 205 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 136/207 (65%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D+++++VQGV Y+++ R L +G+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFDDHIIVNVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFIAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK KA+ S V + E + + P+ +A+SAL+ LG+ +DQA A Sbjct: 121 SERIVSELKSKALPFSEKVIHSAPLPHLE---VTNQPTN--DALSALIKLGFERDQAARA 175 Query: 181 V-VSVLKKEKNIADDSQIIRLALRAIS 206 + ++V E + +IR +L+ +S Sbjct: 176 LALAVNALEGETVSSALLIRHSLKLLS 202 >gi|319409331|emb|CBI82975.1| holliday junction DNA helicase RuvA [Bartonella schoenbuchensis R1] Length = 211 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 127/207 (61%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + +D++++DVQGV Y ++ R LS L +G+ LF+ETH+R + IRL Sbjct: 1 MIGKLKGILDSICDDHIILDVQGVGYSVFVSNRLLSSLPTLGEHLNLFIETHVRAEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I + PGI K+ Sbjct: 61 FGFTTKAERDWFCLLQNVPGVGAKVALAILGTLSPGELAQAIALNDVAMIKRAPGIGQKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++E K KA+ + + + QA + P +A+SAL LG+ +DQA A Sbjct: 121 SERIISEFKNKALPFNEESKNTAHLASNLQAQETNQP--VNDALSALTKLGFDRDQAAQA 178 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + L E+ + +IR +L+ +S Sbjct: 179 LSCALSSLEEETVSSALLIRHSLKLLS 205 >gi|319404769|emb|CBI78370.1| holliday junction DNA helicase RuvA [Bartonella rochalimae ATCC BAA-1498] Length = 215 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 80/215 (37%), Positives = 137/215 (63%), Gaps = 15/215 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E ++ D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + I++ PG+ K+ Sbjct: 61 FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRTPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS-----CVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + RI++ELK K + S ++++ + E+ + P+ +A+ AL+ LG+ + Sbjct: 121 SERIVSELKNKTLQFSKEDNKNLAFSSSLTFSSEEEY---QPTN--DALLALIKLGFDHE 175 Query: 176 QATTAV---VSVLKKEKNIADDSQIIRLALRAISC 207 +A TA+ VS LK E + ++R +L+ +S Sbjct: 176 KAATALASAVSALKGE--TISSALLVRHSLKLLSS 208 >gi|154252563|ref|YP_001413387.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans DS-1] gi|171769603|sp|A7HUZ7|RUVA_PARL1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154156513|gb|ABS63730.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans DS-1] Length = 205 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/209 (42%), Positives = 127/209 (60%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK++G ++ ED+ +IDV GV Y + C RTL L G TL +ET + + IRL Sbjct: 1 MIGKLRGIVDSTGEDWAVIDVGGVGYHVTCSSRTLRNLPPAGGAVTLSIETKVSDEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +D +R+WF LL +VQGVG RVA+GVL + +L +I L + K ++ PG+ K+ Sbjct: 61 IGFTTDSEREWFRLLLAVQGVGTRVALGVLGTLAPADLARAIALDDKKAVSAAPGVGPKV 120 Query: 121 ASRIMTELKGK---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A+RI+TELK K ++ LS+ ++ VN E S P A +A+SALVNLGY Q QA Sbjct: 121 AARIVTELKDKVPDSMGLSAALE---VGVNGEAVSSVSAP--ARDAVSALVNLGYPQAQA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + K+ + A Q+IR L+ ++ Sbjct: 176 MGAVAAAAKRLDDAASTEQLIRHGLKELA 204 >gi|114704960|ref|ZP_01437868.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi HTCC2506] gi|114539745|gb|EAU42865.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi HTCC2506] Length = 206 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 138/207 (66%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E + ED+V++DV GV Y+ +C RTL+ L +G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTVEEIGEDHVVVDVHGVGYVAFCGARTLAGLSGVGEAIVLFIETIVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R WF LLQ+VQGVG++VA+ V+ +++ +L ++ LQ+ ++A+ PG+ K+ Sbjct: 61 YGFATAAERDWFRLLQTVQGVGSKVALAVIGTLSSGDLANAVALQDKAMVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK +A + S ++ + ++ S P +A+SAL NLGY +DQA T Sbjct: 121 AQRIVAELKDRAPAFSGAGSEESFGLKRDIGGGTASAP--VADAVSALTNLGYPRDQAAT 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + ++ AD +++IRL L+A+S Sbjct: 179 AVATAVRDAGEDADSAKLIRLGLKALS 205 >gi|110635507|ref|YP_675715.1| Holliday junction DNA helicase motor protein [Mesorhizobium sp. BNC1] gi|123161737|sp|Q11DH5|RUVA_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110286491|gb|ABG64550.1| Holliday junction DNA helicase subunit RuvA [Chelativorans sp. BNC1] Length = 206 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 135/207 (65%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ ++DV GV Y+ +C R+LS LG +G TLF+ET++R+D IRL Sbjct: 1 MIGKLKGVLDEIGEDHCVVDVGGVGYVAHCSARSLSTLGSVGTPVTLFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF + L+R+WF LLQ +VQGVGA+VA+ VLS +T +EL +I L++ +A+ PG+ K Sbjct: 61 YGFRTVLEREWFRLLQNNVQGVGAKVALSVLSTLTPSELANAIALRDIATVARAPGVGRK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + K+ P+ +A+SAL NLGY +D A Sbjct: 121 VAERIVTELKSKAPAFAGEAAGAIGL--KQDLGEGVAPAPVSDAVSALANLGYSRDIAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD +IRL L+ ++ Sbjct: 179 AVAAALKSAGEGADTGTLIRLGLKELA 205 >gi|121601945|ref|YP_988488.1| Holliday junction DNA helicase motor protein [Bartonella bacilliformis KC583] gi|166230519|sp|A1UR85|RUVA_BARBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120614122|gb|ABM44723.1| Holliday junction DNA helicase RuvA [Bartonella bacilliformis KC583] Length = 217 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 133/215 (61%), Gaps = 9/215 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ ++ED++++DVQGV Y+++ R LS L + G +LF+ETH+R+D IRL Sbjct: 1 MIGKLTGILDSVFEDHIILDVQGVGYVVFLSNRLLSSLPERGQAVSLFIETHVREDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ WF LLQ+V+GVGA+VA+ +LS + +L ++I L + +I++ PG+ + Sbjct: 61 FGFETKVEQDWFCLLQNVRGVGAKVALAILSTLPPPQLAQAITLSDIAMISRSPGVGKMV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-------FAINAISALVNLGYG 173 + RI+ ELK KA+ S+ Q M + S +++A++AL LG+ Sbjct: 121 SERIINELKNKALP-SNAPHQSMPHFVSYSSETSSQAGTQHTGHQHSMDALAALTKLGFE 179 Query: 174 QDQATTAVVSVLKK-EKNIADDSQIIRLALRAISC 207 +DQAT A+ +K E + +IR +L+ +S Sbjct: 180 RDQATHALQEAIKAFEGETPSSALLIRHSLKLLSS 214 >gi|217976203|ref|YP_002360350.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2] gi|254767375|sp|B8EJI5|RUVA_METSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|217501579|gb|ACK48988.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2] Length = 209 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ EDYV++DV GV Y+++C RTL L G L ++T MR+D I+L Sbjct: 1 MIGKLKGLVDSQGEDYVILDVNGVGYVVHCSSRTLQNLPPQGQATALAIDTQMREDSIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +R+WF LLQSVQGVGA+VA+ + + E+V +I Q+ A+ G+ K+ Sbjct: 61 YGFASETEREWFRLLQSVQGVGAKVALAIQGVLRPGEIVTAIAAQDRAAFARASGVGAKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQ 176 A+RI+ ELK KA +L + + ++ E A + + S A+ +AIS LVNLG+G+ Q Sbjct: 121 AARILAELKDKAPALGASLHT-LAGAGSEGAGVEAPASGAVSDAISVLVNLGFGRSQ 176 >gi|20455269|sp|Q9L9C4|RUVA_RHIET RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|7110154|gb|AAF36813.1|AF175525_1 RuvA [Rhizobium etli] Length = 206 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DVQGVCY+ YC RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVE--SIILQNSKVIAQIPGISM 118 FGF++ L+R+WF LL A SR I LQ+ +++ PG+ Sbjct: 61 FGFMTALEREWFNLLSKASRASAPRWRSPCSRPLNARPSSPMPIALQDRAAVSRAPGVGP 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+A R++TELK +A + + + ++ K + + +A+SAL NLGY +DQA Sbjct: 121 KVAMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAA 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + +K AD +++IRL L+ ++ Sbjct: 178 NAVAAAMKTAGEGADSAKLIRLGLKELA 205 >gi|83592424|ref|YP_426176.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170] gi|123739581|sp|Q2RVF6|RUVA_RHORT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83575338|gb|ABC21889.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170] Length = 212 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 111/184 (60%), Gaps = 4/184 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ + ED+ +IDV GV Y+++CP R L+ L G L VET +R+D I L Sbjct: 1 MIAKLKGLVDSVAEDHAVIDVGGVGYLVFCPARVLTRLPSPGQAVALVVETQVREDHISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +R WF LL +VQGVG++VA+ VLS ++A ++ ++I + + + PG+ K+ Sbjct: 61 FGFLETAERDWFRLLSTVQGVGSKVALSVLSVLSAGQISQAIAAGDKAALGRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI----NAISALVNLGYGQDQ 176 A+RI +ELK KA++L + + A +A+SALVNLGYG+ + Sbjct: 121 AARIASELKDKAVALGGMPAPPPRGAGTDAAGEGPPGGPTGDVLGDAVSALVNLGYGRSE 180 Query: 177 ATTA 180 A A Sbjct: 181 AVGA 184 >gi|312113736|ref|YP_004011332.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC 17100] gi|311218865|gb|ADP70233.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC 17100] Length = 209 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 127/209 (60%), Gaps = 4/209 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + D+ +IDV GV Y + C RTL L K G+ L +ET++R+D I+L Sbjct: 1 MIGKLKGIVDAVGADHAIIDVGGVGYEVACSPRTLGAL-KPGEPVALSIETYVREDAIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R WF LLQSVQGVGA+VA+ +L+ + + +L ++I +Q+ + + PG+ K+ Sbjct: 60 YGFLSEAERGWFRLLQSVQGVGAKVALSILATLDSAQLAQAIAMQDRVSVTRAPGVGPKV 119 Query: 121 ASRIMTELKGKAISLSSVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ ELK KA L+ V S + PS A A+SALVNLGY QA Sbjct: 120 ALRIVNELKDKAPPLAFSVAAIAAPASGSASAAIPASAAPSPAAEAVSALVNLGYAPLQA 179 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + L K A +IRL L+ ++ Sbjct: 180 NAAISTALGKAGEDARTEDLIRLGLKDLA 208 >gi|239947225|ref|ZP_04698978.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921501|gb|EER21525.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of Ixodes scapularis] Length = 203 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 130/204 (63%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ +I ++ + I G+ K+ Sbjct: 60 YGFLTLEEKSFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A RI+ ELKGK +SS S + K+ +I ++ A N I ALVNLG+ + +A Sbjct: 120 AERIVLELKGKVAKISS-----GSTIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV S++ + I+ D Q+I+ AL+ Sbjct: 175 AVQSIITQNPEISID-QLIKTALK 197 >gi|23010264|ref|ZP_00051013.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Magnetospirillum magnetotacticum MS-1] Length = 182 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 65/138 (47%), Positives = 96/138 (69%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGLVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+GVLS + L +I + IA+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPEALATAIATGDKGAIARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSV 138 A+R++ ELK KA + + + Sbjct: 121 AARLVAELKDKAPAFAPI 138 >gi|144898113|emb|CAM74977.1| Holliday junction ATP-dependent DNA helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG I+ L +D+ ++DV GV Y+++C RTL L ++G L VETH+R+D I L Sbjct: 1 MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +R WF LL +VQGVGA+VA+ +LS T +L+++I Q+ ++ + G+ K+ Sbjct: 60 YGFLEPGERDWFNLLITVQGVGAKVALAILSVATPEQLLQTIAAQDKVMLTRASGVGPKL 119 Query: 121 ASRIMTELKGKA--ISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQ 174 A RI+TELK KA +SL + S P +AISALVNLGY + Sbjct: 120 ALRILTELKDKAGKMSLGGFASSAGTAA-------ISTPVGDGGLMEDAISALVNLGYKR 172 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALR 203 +A AV V K+ AD S +IR AL+ Sbjct: 173 LEAFEAVGIVAKELGEGADSSTLIRHALK 201 >gi|114570973|ref|YP_757653.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10] gi|122315334|sp|Q0ALX8|RUVA_MARMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114341435|gb|ABI66715.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10] Length = 213 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 119/214 (55%), Gaps = 8/214 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L D +++DV GV Y++ RTLS L D L +ETH+R+D +L Sbjct: 1 MIGMLTGRVAALGADELVLDVSGVGYLVGAGARTLSRLEPDQDIV-LHIETHVREDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL D+DR WF+ LQ++QGVGA+ A +L + +E+ + L + A+ G+ K+ Sbjct: 60 YGFLDDIDRAWFVHLQNIQGVGAKAAFAILDTVPVSEIANAAALGDKSTFARAKGVGPKL 119 Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYG 173 A+RI TELK G++ S+ V D S A +A+SALVNLGY Sbjct: 120 ATRIATELKDKAPPTGRSFSIGLPVHSDDGTTGGAPVAPAGGDSLAREDAVSALVNLGYN 179 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 + QA AV +L+ + A +IRL+L+ ++ Sbjct: 180 ESQARQAVAKILRDADSEAPLGDVIRLSLKELAA 213 >gi|157828405|ref|YP_001494647.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933115|ref|YP_001649904.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str. Iowa] gi|166200256|sp|A8GRW4|RUVA_RICRS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045764|sp|B0BXC2|RUVA_RICRO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157800886|gb|ABV76139.1| Holliday junction DNA helicase motor protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908202|gb|ABY72498.1| Holliday junction DNA helicase [Rickettsia rickettsii str. Iowa] Length = 204 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 129/204 (63%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGTLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A RI+ ELKGK +SS S + KE +I ++ A N I ALVNLG+ + +A Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + I+ D ++I+ AL+ Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197 >gi|157964465|ref|YP_001499289.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5] gi|157844241|gb|ABV84742.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5] Length = 212 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 9 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 67 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 68 YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 127 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A R++ ELKGK +SS S + K+ +I ++ A N I ALVNLG+ + +A Sbjct: 128 AERVVLELKGKVAKISS-----GSAIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQN 182 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + I+ D ++I+ AL+ Sbjct: 183 AVQGIITQNPEISID-ELIKTALK 205 >gi|67458996|ref|YP_246620.1| Holliday junction DNA helicase motor protein [Rickettsia felis URRWXCal2] gi|75536568|sp|Q4ULW8|RUVA_RICFE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67004529|gb|AAY61455.1| Holliday junction DNA helicase RuvA [Rickettsia felis URRWXCal2] Length = 203 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 129/204 (63%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DY++IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKIDSQGDDYIIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ +I ++ + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A RI+ ELKGK +SS S + K+ +I ++ A N I ALVNLG+ + +A Sbjct: 120 AERIVLELKGKVAKISS-----GSVIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + I+ D ++I+ AL+ Sbjct: 175 AVQGIIIQNPEISID-ELIKTALK 197 >gi|238650928|ref|YP_002916784.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii str. Rustic] gi|259495655|sp|C4K2D5|RUVA_RICPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|238625026|gb|ACR47732.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii str. Rustic] Length = 203 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ + L Sbjct: 1 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASDKTLGTLAE-GEFYKLFIETHVREEHMHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A RI+ ELKGK +SS S + KE +I ++ A N I ALVNLG+ + +A Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + I+ D ++I+ AL+ Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197 >gi|91205752|ref|YP_538107.1| Holliday junction DNA helicase motor protein [Rickettsia bellii RML369-C] gi|122990902|sp|Q1RHZ6|RUVA_RICBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91069296|gb|ABE05018.1| Holliday junction DNA helicase RuvA [Rickettsia bellii RML369-C] Length = 203 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ Y+DYV+IDV GV Y ++ +TLS L + G+ LF+ETH+R+D I L Sbjct: 1 MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ +F LLQSV G+G R+A+ +LS +T T++ +I ++ + I G+ K+ Sbjct: 60 YGFLSLEEKSFFNLLQSVNGIGTRMALSILSTLTPTDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAINAISALVNLGYGQDQATT 179 A RI+ EL K +SS S K+ +I + P + I AL+N+G+ + +A Sbjct: 120 AERIVRELSDKVAKISS-----SSAAIKDSLNIKGITPVASSEVIKALINMGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ K I+ D ++IR AL+ Sbjct: 175 AVQEIITKNPEISID-ELIRTALK 197 >gi|157827122|ref|YP_001496186.1| Holliday junction DNA helicase RuvA [Rickettsia bellii OSU 85-389] gi|166200254|sp|A8GWC2|RUVA_RICB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157802426|gb|ABV79149.1| Holliday junction DNA helicase motor protein [Rickettsia bellii OSU 85-389] Length = 203 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ Y+DYV+IDV GV Y ++ +TLS L + G+ LF+ETH+R+D I L Sbjct: 1 MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ +F LLQSV G+G R+A+ +LS +T T++ +I ++ + I G+ K+ Sbjct: 60 YGFLSLEEKSFFNLLQSVNGIGTRMALSILSALTPTDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAINAISALVNLGYGQDQATT 179 A RI+ EL K +SS S K+ +I + P + I AL+N+G+ + +A Sbjct: 120 AERIVRELSDKVAKISS-----SSAAIKDSLNIKGITPVASSEVIKALINMGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ K I+ D ++IR AL+ Sbjct: 175 AVQEIITKNPEISID-ELIRTALK 197 >gi|83312317|ref|YP_422581.1| Holliday junction DNA helicase RuvA [Magnetospirillum magneticum AMB-1] gi|123726899|sp|Q2W2A3|RUVA_MAGMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|82947158|dbj|BAE52022.1| Holliday junction resolvasome, DNA-binding subunit [Magnetospirillum magneticum AMB-1] Length = 212 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG I+ L +D+ ++D GV Y++ C +TL+ L + G LFVET +R+D I L Sbjct: 1 MIAKLKGLIDSLGDDWAVVDCNGVGYLVACSSKTLARL-ETGTAAALFVETQVREDAISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +R WF LL +VQGVGA+VA+ +LS + +L++ I Q+ + + G+ K+ Sbjct: 60 FGFLETGERDWFRLLTTVQGVGAKVALAILSVASPDQLLQIIAAQDKAGLTRANGVGPKL 119 Query: 121 ASRIMTELKGKA--ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+TELK KA I+L + A + + +A+SALVNLGY + +A Sbjct: 120 AVRILTELKDKAGKIALGGFSPGGIKDALSASAPLPAASGRMEDAVSALVNLGYKRLEAF 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + AD S +IR AL+ Sbjct: 180 QAVGETARELGDEADSSALIRAALK 204 >gi|34580551|ref|ZP_00142031.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246] gi|28261936|gb|EAA25440.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246] Length = 203 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLALEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A RI+ ELKGK +SS S + KE +I ++ A N I ALVNLG+ + +A Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + I+ D ++I+ AL+ Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197 >gi|15892454|ref|NP_360168.1| Holliday junction DNA helicase motor protein [Rickettsia conorii str. Malish 7] gi|20140118|sp|Q92I89|RUVA_RICCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15619609|gb|AAL03069.1| holliday junction DNA helicase RuvA [Rickettsia conorii str. Malish 7] Length = 203 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGQLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A RI+ ELKGK +SS S + KE +I ++ A N I ALVNLG+ + +A Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + I+ D ++I+ AL+ Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197 >gi|157825657|ref|YP_001493377.1| Holliday junction DNA helicase RuvA [Rickettsia akari str. Hartford] gi|166200253|sp|A8GN94|RUVA_RICAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157799615|gb|ABV74869.1| Holliday junction DNA helicase motor protein [Rickettsia akari str. Hartford] Length = 203 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 129/204 (63%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DY++IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKIDAQGDDYIIIDVNGVGYLVYASGKTLGKLSE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T T++ +I ++ + I G+ K+ Sbjct: 60 YGFLTIEEKNFFNLLQSVNGIGTRMALSILSNLTPTDIQIAINNEDKDIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A RI+ ELKGK +S+ + + + +I ++ S A N I ALVNLG+ + +A Sbjct: 120 AERIVLELKGKVAKIST-----GAAIINDSLNIKNITSVASNEVIKALVNLGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 +V ++ + I+ D ++I+ AL+ Sbjct: 175 SVQGIVIQNPEISID-ELIKTALK 197 >gi|229586656|ref|YP_002845157.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5] gi|259495654|sp|C3PNA4|RUVA_RICAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|228021706|gb|ACP53414.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5] Length = 203 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 128/204 (62%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLNLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A RI+ ELKGK +SS S + KE +I + A N I ALVNLG+ + +A Sbjct: 120 AERIVLELKGKVAKISS-----GSAIIKESLNIKHITPVASNEVIKALVNLGFSRFEAQN 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + I+ D ++I+ AL+ Sbjct: 175 AVQGIITQNPEISID-ELIKTALK 197 >gi|260576656|ref|ZP_05844643.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2] gi|259021141|gb|EEW24450.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2] Length = 224 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 121/219 (55%), Gaps = 17/219 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D+VLIDV+GV YI++ RTL+ L G+ L+ E +R+D ++L Sbjct: 1 MIGKISGRIDYRGADHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+++W LL +VQGVGA+ AM +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTLLEKEWHRLLMTVQGVGAKAAMAILGTLGAEGAARAISLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISL---------------SSVVQQDMSCVNKE-QAHICSMPSFAINAI 164 A R++ ELK KA + + V + + K A S ++ +A+ Sbjct: 121 AQRVVLELKSKAPGVMAMGAALSARAEGNDADAVIEPLPVARKPTPAPTQSRAAYTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 SAL NLGYG A+ AV E AD + +IR+AL+ Sbjct: 181 SALTNLGYGPVDASQAVAQA-AGEAPEADTATLIRIALK 218 >gi|83859806|ref|ZP_00953326.1| Holliday junction DNA helicase motor protein [Oceanicaulis alexandrii HTCC2633] gi|83852165|gb|EAP90019.1| Holliday junction DNA helicase motor protein [Oceanicaulis alexandrii HTCC2633] Length = 216 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 118/216 (54%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + E+ +IDV GV Y++ RTL L + G L +ETH+R+DQ +L Sbjct: 1 MIGKLKGVVDCVGEEEAVIDVNGVGYLVSAGSRTLGRL-EPGKPVALHIETHVREDQFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLSD +R WF+ LQSVQGVGA+ A+ +L I E+ S IL + + G+ K+ Sbjct: 60 FGFLSDSERAWFVRLQSVQGVGAKHALAMLDAIEVGEIESSAILGDPLPFERAKGVGKKL 119 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAI---------NAISALVNL 170 A RI TELK KA L S+ P+ A +A+SALVNL Sbjct: 120 AQRIATELKDKAPPLGRSLGAGVAELAAALAPAGAETPTAAPAPKDNVMRESAVSALVNL 179 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GY + A A L++ A + +I+ AL+ ++ Sbjct: 180 GYSESDARKAAAEALRQLGEDATEGLVIKSALKELA 215 >gi|114327763|ref|YP_744920.1| Holliday junction DNA helicase RuvA [Granulibacter bethesdensis CGDNIH1] gi|114315937|gb|ABI61997.1| holliday junction DNA helicase ruvA [Granulibacter bethesdensis CGDNIH1] Length = 204 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 123/208 (59%), Gaps = 8/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++GL ED LIDV GV Y++Y RTL+ L + + + +ET +R+D I L Sbjct: 1 MIGRLTGLVDGLEEDRCLIDVNGVGYVVYASSRTLAALPRAPEVARVLIETQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R WF LL +VQGVGA+V + +LS ++A +L+ +++ + + + + G+ ++ Sbjct: 61 FGFIDTAERDWFRLLTTVQGVGAKVGLNILSALSAGDLISALMAGDQRALTRASGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A+RI++ELK K ++ S + + S P+ + + +SAL+NLGY + +A Sbjct: 121 AARIVSELKDKVGAMPS------GPMTIGGVGVLSAPAGGVEQDTLSALLNLGYRRPEAL 174 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V + A I+R LR ++ Sbjct: 175 AAIRRVREALGEEAGLDAILRQCLRELA 202 >gi|126725530|ref|ZP_01741372.1| Holliday junction DNA helicase motor protein [Rhodobacterales bacterium HTCC2150] gi|126704734|gb|EBA03825.1| Holliday junction DNA helicase motor protein [Rhodobacterales bacterium HTCC2150] Length = 221 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G + D+VLIDV+GV YI+YC RTLS L G +L+ E +R+D ++L Sbjct: 1 MIGKITGIQDMRGTDHVLIDVRGVGYIVYCSDRTLSALPGKGQAVSLYTELLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQG+GA+ +M +L + A + +I L ++ I PG+ KI Sbjct: 61 FGFTTLFEKEWHKLLISVQGIGAKASMAILGTLGAEGVGRAITLGDATAIKAAPGVGPKI 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHIC-SMPSFA---------INAISAL 167 A R++ ELK KA ++L + + V E I P A +A+SAL Sbjct: 121 AQRVVLELKNKAPAIMALGGSLDEATGSVAAEPDDILIEAPQKAKTSPDAVAQSDALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG A AV V E AD +IR AL+ ++ Sbjct: 181 TNLGYGPSDAAMAVAEV-AGEMADADAGALIRAALQRLA 218 >gi|332559001|ref|ZP_08413323.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N] gi|332276713|gb|EGJ22028.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N] Length = 224 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+Y RTL+ + +G+ L+ E +R+D ++L Sbjct: 1 MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISL------------SSVVQQDMSCVN----KEQAHICSMPSFAINAI 164 A R++ ELK KA +L S + D + K +A PS +A+ Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPDPGTSSGSRRKTRAPEPPRPSHTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 SAL NLGY Q V+ E AD + +IR AL+ Sbjct: 181 SALANLGY-QPTDAAQAVAQAAGESPDADTAALIRAALK 218 >gi|218462458|ref|ZP_03502549.1| Holliday junction DNA helicase RuvA [Rhizobium etli Kim 5] Length = 168 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/169 (42%), Positives = 113/169 (66%), Gaps = 3/169 (1%) Query: 38 LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97 LG G+ C LF+ET++R+DQ++LFGF + L+R+WF LLQSVQGVGA+VA+ VLS +T E Sbjct: 2 LGSAGEACVLFIETYVREDQLKLFGFTTALEREWFNLLQSVQGVGAKVALAVLSTLTPGE 61 Query: 98 LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP 157 L +I LQ+ +++ PG+ K+A R++TELK +A + + + ++ K++ Sbjct: 62 LANAIALQDRAAVSRAPGVGPKVAMRLVTELKNRAPAFAG---EAINIALKQELGEGVAA 118 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + +A+SAL NLGY +DQA AV + +K AD +++IRL L+ ++ Sbjct: 119 APVADAVSALTNLGYSRDQAANAVAAAMKTAGEGADSAKLIRLGLKELA 167 >gi|15604250|ref|NP_220766.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii str. Madrid E] gi|6226115|sp|Q9ZDE6|RUVA_RICPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3860942|emb|CAA14842.1| HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) [Rickettsia prowazekii] gi|292571994|gb|ADE29909.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii Rp22] Length = 199 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 125/206 (60%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DYV+IDV GV Y++Y +TL+ L + G F LF+ETH+R++ I L Sbjct: 1 MIGKLNGKIDSHCDDYVIIDVNGVGYLVYASGKTLAKLVE-GKFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G ++A+ +LS +T T++ +I + + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIQIAINNDDRNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYGQDQA 177 A RIM ELK K + SS + +D ++ S AIN + ALVNLG+ + +A Sbjct: 120 AERIMLELKDKITKIFSSSAIIKD-----------SNISSIAINEVMKALVNLGFTRFEA 168 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 169 QNTVQGIITQNPKISID-ELIKTALK 193 >gi|114771193|ref|ZP_01448613.1| Holliday junction DNA helicase motor protein [alpha proteobacterium HTCC2255] gi|114548118|gb|EAU51005.1| Holliday junction DNA helicase motor protein [alpha proteobacterium HTCC2255] Length = 225 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 121/219 (55%), Gaps = 17/219 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G ++ D+VL+DVQGV Y++YC RTLS L G L+ + +R+D ++L Sbjct: 1 MIGKITGRVDYRGTDHVLVDVQGVGYMVYCSERTLSGLPSRGGIVALYTDLLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + D++W LL +VQGVGA+ A+ + S + + ++I L + I GI KI Sbjct: 61 FGFTTLADKEWHKLLTTVQGVGAKAALAIASTLGTDGVSKAIALGDVNAIKSAQGIGPKI 120 Query: 121 ASRIMTELKGKAISL-------SSVVQQDMSCVNKEQAHI---------CSMPSFAINAI 164 A R++TELK KA + S+VV+ D S V Q + S S +A+ Sbjct: 121 AQRVITELKDKAPKIMAMGGEGSAVVEADESMVIDVQTPVDTPVKNQNRKSEASAQADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 SAL+NLGY A A+ V E + ++II+ AL+ Sbjct: 181 SALINLGYAHGDAAGAIAQV-TSEIPSSISTEIIKAALK 218 >gi|221639992|ref|YP_002526254.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides KD131] gi|254767384|sp|B9KKV6|RUVA_RHOSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221160773|gb|ACM01753.1| Holliday junction ATP-dependent DNA helicase ruvA [Rhodobacter sphaeroides KD131] Length = 224 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 17/219 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+Y RTL+ + +G+ L+ E +R+D ++L Sbjct: 1 MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEAVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSV--------------VQQDMSCVN--KEQAHICSMPSFAINAI 164 A R++ ELK KA +L ++ Q S + K +A PS +A+ Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPQPGTSSGSRRKTRAPEPPRPSHTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 SAL NLGY Q V+ E AD + +IR AL+ Sbjct: 181 SALANLGY-QPTDAAQAVAQAAGESPDADTAALIRAALK 218 >gi|51473576|ref|YP_067333.1| Holliday junction DNA helicase motor protein [Rickettsia typhi str. Wilmington] gi|81390134|sp|Q68WZ1|RUVA_RICTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|51459888|gb|AAU03851.1| Holliday junction DNA helicase RuvA [Rickettsia typhi str. Wilmington] Length = 200 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DYV+IDV GV Y++Y TL+ L + G F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKIDSQCDDYVIIDVNGVGYLVYASGTTLAKLVE-GRFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G ++A+ +LS +T T++ +I + + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIKIAINNDDKNIFKAISGVGDKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 RIM ELKGK + S S + K+ ++I S+ IN I ALVNLG+ + +A Sbjct: 120 TERIMLELKGKIAKIFS-----SSAIIKDSSNISSVE---INEVIKALVNLGFTRFEAQN 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 172 TVQGIITQNTKISID-ELIKTALK 194 >gi|77464125|ref|YP_353629.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides 2.4.1] gi|126462968|ref|YP_001044082.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17029] gi|90135713|sp|Q3J0F6|RUVA_RHOS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200251|sp|A3PLU4|RUVA_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77388543|gb|ABA79728.1| Holliday junction DNA helicase subunit RuvA [Rhodobacter sphaeroides 2.4.1] gi|126104632|gb|ABN77310.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17029] Length = 224 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 17/219 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+Y RTL+ + +G+ L+ E +R+D ++L Sbjct: 1 MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV----------------NKEQAHICSMPSFAINAI 164 A R++ ELK KA +L ++ + K +A PS +A+ Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPEPGTSSGSRRKTRAPEPPRPSHTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 SAL NLGY Q V+ E AD + +IR AL+ Sbjct: 181 SALANLGY-QPTDAAQAVAQAAGESPDADTAALIRAALK 218 >gi|157803866|ref|YP_001492415.1| Holliday junction DNA helicase RuvA [Rickettsia canadensis str. McKiel] gi|166200255|sp|A8EZ47|RUVA_RICCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157785129|gb|ABV73630.1| Holliday junction DNA helicase motor protein [Rickettsia canadensis str. McKiel] Length = 204 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 123/204 (60%), Gaps = 9/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKADSQGDDYVIIDVNGVGYLVYASGKTLDKLVE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T ++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTRMALSILSNLTPDDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYGQDQATT 179 A RI+ ELK K +SS S K+ +I ++ N + AL+NLG+ + +A Sbjct: 120 AERIVLELKDKVTKISS------SSAIKDSLNIKNITPVTSNEVMKALINLGFSRFEAQN 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 174 VVQGIITQNPKISID-ELIKTALK 196 >gi|294678733|ref|YP_003579348.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB 1003] gi|294477553|gb|ADE86941.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB 1003] Length = 222 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 116/217 (53%), Gaps = 15/217 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I D+VLIDV+GV YI++ RT + L +G+ C L+ E +R+D ++L Sbjct: 1 MIGRIAGVILHRAMDHVLIDVRGVGYIVHVSSRTAANLPPVGEACALYTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + + ++ L + I PG+ K+ Sbjct: 61 FGFPTLIEKEWHRLLTSVQGIGAKASLAILGTLGPEGVSRALALGDWNAIKAAPGVGPKL 120 Query: 121 ASRIMTELKGKAISL--------------SSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 A R++ ELK KA ++ ++++ V + +F A+SA Sbjct: 121 AQRVVMELKDKAPTVMAMGGTLTVDTAPSDALIETAPKPVKRPAPAATRQVNFTAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 L NLGY A TAV + D +++IR ALR Sbjct: 181 LTNLGYSPSDAATAVARA-SENPEATDTAKLIRTALR 216 >gi|209965101|ref|YP_002298016.1| Holliday junction DNA helicase RuvA [Rhodospirillum centenum SW] gi|226698737|sp|B6ITI5|RUVA_RHOCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209958567|gb|ACI99203.1| holliday junction DNA helicase RuvA [Rhodospirillum centenum SW] Length = 206 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ ++DV GV Y++ RTL L G+ +L E + +D I+L Sbjct: 1 MIAKLTGLLDSTGLDWAIVDVGGVGYLVSASARTLRRLAAPGEAVSLLTEMWVSEDNIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R WF LL +VQGVGARVA+ +LS ++ EL SI Q+ + Q G+ K+ Sbjct: 61 FGFADTEERDWFRLLTTVQGVGARVALNLLSALSPAELTNSIAAQDRTALCQADGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K S + + A +A+SALVNLGY + +A TA Sbjct: 121 AARILNELKEKVASFGAPAPAAATAGKGGAAPAGPA-GAVADAVSALVNLGYRRVEAFTA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V ++ A S +IR L+ +S Sbjct: 180 VNAVAQRLGPEAGVSDLIRAGLKELS 205 >gi|163796368|ref|ZP_02190329.1| elongation factor P [alpha proteobacterium BAL199] gi|159178510|gb|EDP63052.1| elongation factor P [alpha proteobacterium BAL199] Length = 208 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 126/210 (60%), Gaps = 5/210 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ + +IDV GV Y+++ RTL+ LG+ G ++ V+TH+R+D I L Sbjct: 1 MIAKLKGLLDSTGDGMAVIDVGGVGYLVFASARTLTALGEPGSAVSVLVDTHVREDHIHL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F +LQ+VQGVGA+ A+ +LS ++ ++ +I Q+ ++ + G+ K+ Sbjct: 61 YGFASAAERSCFRMLQTVQGVGAKHALSILSVLSPEDVFTAIAAQDRVMLTRADGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178 RI+ ELK K ++++ + D + + A + P +A+SAL NLGYG+ +A Sbjct: 121 GQRIVNELKDKTVNVALGLGADATGPARAAA-VAGQPGDDTVADAVSALSNLGYGRAEAY 179 Query: 179 TAVVSVLKK-EKNIADDSQIIRLALRAISC 207 AV + + + +A D ++I LAL+ ++ Sbjct: 180 GAVSTARQALGEGVALD-KLITLALKELAA 208 >gi|84516659|ref|ZP_01004018.1| Holliday junction DNA helicase motor protein [Loktanella vestfoldensis SKA53] gi|84509695|gb|EAQ06153.1| Holliday junction DNA helicase motor protein [Loktanella vestfoldensis SKA53] Length = 218 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 118/215 (54%), Gaps = 15/215 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV Y++Y R ++ L + G+ L+ + +R+D ++L Sbjct: 1 MIGKIAGRLEYRSTDHVLIDVRGVGYLVYVSDRVMASLPRNGEAVALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + +I L + +A+ G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKARGVGPKT 120 Query: 121 ASRIMTELKGKAISL------------SSVVQQDMSCVNKEQAHICSMPSFAINAISALV 168 A R++ ELK KA + V++ D + + S + +A+SAL Sbjct: 121 AQRVIIELKDKAPGVMALGAGLSAATGDEVIEADPAPAPRATPQPAS--TAQADAMSALA 178 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 NLGY A +AVV L + AD +IR AL+ Sbjct: 179 NLGYAPGDAASAVVQALGADPQ-ADAGVLIRAALQ 212 >gi|148261887|ref|YP_001236014.1| Holliday junction DNA helicase RuvA [Acidiphilium cryptum JF-5] gi|326405391|ref|YP_004285473.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium multivorum AIU301] gi|166229624|sp|A5G2L3|RUVA_ACICJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146403568|gb|ABQ32095.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum JF-5] gi|325052253|dbj|BAJ82591.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium multivorum AIU301] Length = 204 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 120/207 (57%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G E + + LIDV GV Y+++C R+L+ L TL VET +R+D I L Sbjct: 1 MIGRLCGTAEQIEDGRCLIDVSGVGYVVFCSARSLAALPAPPARATLLVETQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R WF LL ++QGVGA+VA+ +LS + +L +I + I + PG+ K+ Sbjct: 61 FGFIDAAERDWFRLLTTIQGVGAKVALNLLSALPPDQLASAIAASDRGAITRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A+R+++EL+ + ++ + + + A + P + +A+SALVNLGY + +A Sbjct: 121 AARLISELRERIAAMPT----GSAFIPTGTAPPVAPPQGKLADALSALVNLGYRRAEAEA 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ +V + A ++IR LR ++ Sbjct: 177 ALSAVQAEAGEDAALDELIRGGLRRLA 203 >gi|85374915|ref|YP_458977.1| Holliday junction DNA helicase RuvA [Erythrobacter litoralis HTCC2594] gi|123293674|sp|Q2N811|RUVA_ERYLH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84787998|gb|ABC64180.1| probable holliday junction DNA helicase protein [Erythrobacter litoralis HTCC2594] Length = 200 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 118/203 (58%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y+++C ++L+ LG++G+ CT++ + + ++ +RL Sbjct: 1 MIAKLKGLLDETGTDWAVIDVSGVGYLVHCSSKSLAALGEVGEACTVYTDLQVSENDMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG++VA+ +LS ++ E+ + ++ ++A+ G+ K+ Sbjct: 61 LGFAEASERDWFRLLTQVQGVGSKVALAILSALSTEEVQTACANGDAAMVARAQGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +L S N + +A+SAL NLG+ A A Sbjct: 121 AGRIVNELKDKAGALPSAPGGAAMAANPAGGA-------SADAVSALENLGFKPAIAARA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + + A +S++IR+AL+ Sbjct: 174 VATAQGELGEGASESELIRVALK 196 >gi|296535992|ref|ZP_06898136.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas cervicalis ATCC 49957] gi|296263678|gb|EFH10159.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas cervicalis ATCC 49957] Length = 207 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ ++ + DV GV Y++ C RTL+ L +L +ET +R+D I L Sbjct: 1 MIGKLTGKLDSQFDGGCIFDVNGVGYLVACSARTLAALPAPPGIGSLLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R W+ L +QGVG +VA+G+LS ++ +L ++I + I + PG+ K+ Sbjct: 61 YGFADATERDWYRTLTGIQGVGPKVALGLLSTLSPADLARALIAGDKGAINRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ EL+ K +L + V A + +AISAL NLG+ + +A A Sbjct: 121 AARLVAELRDKVGALPTGPGLSAGTVTI-AAQLPPADRAQADAISALTNLGWKRPEAAGA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V +K A +IR AL+ ++ Sbjct: 180 VQRVAEKLGEGAGLESLIREALKELA 205 >gi|84687718|ref|ZP_01015591.1| Holliday junction DNA helicase motor protein [Maritimibacter alkaliphilus HTCC2654] gi|84664301|gb|EAQ10792.1| Holliday junction DNA helicase motor protein [Rhodobacterales bacterium HTCC2654] Length = 222 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 122/217 (56%), Gaps = 15/217 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +D+VLIDV+GV YI++ RTL+ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLSGRIDYKGDDHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTDMIVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S ++++WF LL +VQG+GA+ A +L + A + +I L + + G+ K Sbjct: 61 HGFTSLVEKEWFRLLMTVQGIGAKAATAILGTLGADGVSRAIALGDWNAVKAAKGLGPKT 120 Query: 121 ASRIMTELKGKAISLSS-------------VVQQDMSCVNKEQAHICSMPSFA-INAISA 166 A R++ ELK KA ++ + +V+ D + V + A A+SA Sbjct: 121 AQRVVNELKDKAPTIMAMGAGQTVSAPEDVLVESDATPVAAAPRAAPKPANMAQPEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 L NLGYG +A +AV + L + ++ D +++IR AL+ Sbjct: 181 LANLGYGPGEAASAVATALGDDPDL-DTAKLIRAALK 216 >gi|110679369|ref|YP_682376.1| Holliday junction DNA helicase RuvA [Roseobacter denitrificans OCh 114] gi|122972806|sp|Q168A3|RUVA_ROSDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|109455485|gb|ABG31690.1| Holliday junction DNA helicase RuvA, putative [Roseobacter denitrificans OCh 114] Length = 218 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 121/216 (56%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV Y+++C RTL+ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKITGRLEYRASDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + A + +I L + + G+ KI Sbjct: 61 FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120 Query: 121 ASRIMTELKGKAISL-------SSVVQQDMSCVNKEQA---HICSMPSFAINAISALVNL 170 A R++ +LK KA S+ ++V Q V + +A + PS A+SAL NL Sbjct: 121 AQRVVLDLKDKAPSVMGMSDTQATVAAQSSDAVIETRAAPSPVVQNPSAQAEALSALSNL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GY A AV + + A+ +IR AL+ ++ Sbjct: 181 GYAPGDAAAAVAQAAGELPD-AETPDLIRAALKRLA 215 >gi|146277278|ref|YP_001167437.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17025] gi|166200252|sp|A4WRW8|RUVA_RHOS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145555519|gb|ABP70132.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17025] Length = 224 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 16/197 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G ++ D+VLIDV+GV YI++ RTL+ + G+ L+ E +R+D ++L Sbjct: 1 MIGKISGILDFRGPDHVLIDVRGVGYIVHVSDRTLAAMPAPGEGVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A + +I L +++ I PG+ KI Sbjct: 61 FGFTTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGVARAISLGDARSIQAAPGVGPKI 120 Query: 121 ASRIMTELKGKAISL-----------SSVVQQ-DMSCVNKEQAHICSMPSFAIN----AI 164 A R++ ELK KA +L ++VV++ + + + P A N A+ Sbjct: 121 AQRVVLELKSKAPALMVMGGAAPARAAAVVEETPEEPAPRRKPSTRAAPPPAANHTGDAL 180 Query: 165 SALVNLGYGQDQATTAV 181 SAL NLGY A AV Sbjct: 181 SALTNLGYQPSDAAQAV 197 >gi|288957819|ref|YP_003448160.1| holliday junction DNA helicase [Azospirillum sp. B510] gi|288910127|dbj|BAI71616.1| holliday junction DNA helicase [Azospirillum sp. B510] Length = 208 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 120/209 (57%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+V++DV GV Y++ C RTLS + +G+ +L VET +R+++I L Sbjct: 1 MIAKLTGIVDSTGTDWVVLDVNGVGYLLSCSNRTLSRM-VVGERLSLVVETFIREERIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL ++QGVGAR+A+ +L + +L +I Q+ + + G+ K+ Sbjct: 60 HGFGDQAERDWFKLLTTIQGVGARLALSILGVLDPDQLTRAIAAQDKTALVRADGVGPKV 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A+RI+ ELK G + + A + P+ A +A+SALVNLGYG+ +A Sbjct: 120 AARILNELKDKVGNLALGPAAAAGAPAGKGAPAAVPGASPALA-DAVSALVNLGYGRSEA 178 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AVV+ + + A S +IR L+ +S Sbjct: 179 FGAVVAAGRVLGDDAGVSDLIRQGLKELS 207 >gi|290967870|ref|ZP_06559420.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1 str. 28L] gi|290782009|gb|EFD94587.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1 str. 28L] Length = 200 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + ++ +Y IDV GV Y IY P TL+ L + TLF H+R+D I L Sbjct: 1 MIGYIRGPVTRIFHEYCFIDVHGVGYRIYAPAATLAALVPERE-TTLFTYMHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + FMLL V GVG +VA+G+LS +T E ++ ++ K + ++PGI K+ Sbjct: 60 YGFGTQEEYDVFMLLIGVSGVGPKVALGILSAVTPEEFCAAVQRKDLKTLTRMPGIGKKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RI+ EL K SL + + S A+ AL LGY + +A TA Sbjct: 120 GDRILFELHDKVASLQGRIPD-----GADNGEDIDSGSHTDEAVEALRGLGYSESEAQTA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V SV K+ ++ D IR AL+ + Sbjct: 175 VASVTGKDLSVEDK---IRRALQVLG 197 >gi|163733514|ref|ZP_02140957.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis Och 149] gi|161393302|gb|EDQ17628.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis Och 149] Length = 218 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 118/216 (54%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV Y+++C RTL+ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKITGRLEYRTTDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + A + +I L + + G+ KI Sbjct: 61 FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120 Query: 121 ASRIMTELKGKAISL------SSVVQQDMSC----VNKEQAHICSMPSFAINAISALVNL 170 A R++ +LK KA S+ ++ D + A + PS A+SAL NL Sbjct: 121 AQRVVLDLKDKAPSVMGMRDTQAIASADATDTVIETTATPAPVLQNPSAQAEALSALSNL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GYG A AV + A+ +IR AL+ ++ Sbjct: 181 GYGPGDAAGAVAEAAGEMPE-AETPDLIRAALKRLA 215 >gi|292670920|ref|ZP_06604346.1| crossover junction endoribonuclease subunit A [Selenomonas noxia ATCC 43541] gi|292647541|gb|EFF65513.1| crossover junction endoribonuclease subunit A [Selenomonas noxia ATCC 43541] Length = 200 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + DY +DV V Y ++ +T + L +G+ L++ TH+R+D I L Sbjct: 1 MIGFLRGKVTYTFPDYCFLDVHDVGYRVFVSHQTRNHL-SVGEEVMLYIHTHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L + G+G +VA G+LS ITA E I ++ K I ++PGI K Sbjct: 60 YGFFSQEEYDLFQHLIGISGIGPKVAQGILSAITANEFYRLIHQKDVKAITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K L+S D S + SM A AL+NLG+GQ + Sbjct: 120 AERIILELKDK---LTSSSFDDDSFADHAAGFADSMGDKISEATEALLNLGFGQSE---- 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + SVLKK+ + +IIR AL Sbjct: 173 IQSVLKKKMDWESTEEIIRYAL 194 >gi|126732347|ref|ZP_01748147.1| Holliday junction DNA helicase motor protein [Sagittula stellata E-37] gi|126707216|gb|EBA06282.1| Holliday junction DNA helicase motor protein [Sagittula stellata E-37] Length = 222 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I ED+VLIDV+GV Y++YC R L+ LG+ G+F L+ + +R+D ++L Sbjct: 1 MIGRIAGQIVYRGEDHVLIDVRGVGYVVYCTDRVLASLGRPGEFAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++WF LL SVQGVGA+ ++ +L + A + ++ L + + GI K Sbjct: 61 FGFPTLVEKEWFRLLMSVQGVGAKASLAILGALGADGVSRALALGDWNAVKAAKGIGPKT 120 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKE---------QAHICSMPSFAINAISA 166 A R++ ELK K A+ + + +S E A + S A+SA Sbjct: 121 AQRVVNELKDKAPMVMAMGVGASPPPPLSDAPDEVVETAARPPAAPPAPVASAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG +A AV ++ ++ D + +IR AL+ ++ Sbjct: 181 LGNLGYGPGEAAGAVAQAAGEDGSL-DTAGLIRAALKLLA 219 >gi|254294768|ref|YP_003060791.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814] gi|254043299|gb|ACT60094.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814] Length = 209 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG + + LIDV GV Y+++C RTL+ L IG T+FVET M ++ I+L Sbjct: 1 MIARLKGIVAATGDGQALIDVNGVGYVLFCGGRTLARL-TIGRENTVFVETQMSENAIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + DR WF LQ GVGA+ A+ +L +T +L+++I+L ++ + + G+ K+ Sbjct: 60 YGFETAEDRAWFSRLQDAPGVGAKAALNILDALTPAQLMDAIVLGDAASVQRAHGVGKKL 119 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R+++E K K L SV V + + A SAL NLGY A Sbjct: 120 AERVVSEFKDKPPPAGLFSVSFAPSEGVEGLASTSTASTGSRAAAASALTNLGYQNVDAQ 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV K+ A + +I+ AL+A++ Sbjct: 180 RAVAVAAKELGEDASEGALIKAALKALA 207 >gi|116748437|ref|YP_845124.1| Holliday junction DNA helicase RuvA [Syntrophobacter fumaroxidans MPOB] gi|166231451|sp|A0LGY7|RUVA_SYNFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116697501|gb|ABK16689.1| Holliday junction DNA helicase subunit RuvA [Syntrophobacter fumaroxidans MPOB] Length = 197 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/186 (37%), Positives = 104/186 (55%), Gaps = 9/186 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + DY++IDV GV YI+Y P+ T L GD L + TH+R+D I+L Sbjct: 1 MIGHLEGRLRHKAPDYIVIDVHGVGYIVYVPLSTFYDLPGPGDTVALNIHTHIREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ L +V GVG R+A+ +LS +T +L I+ Q + IPG+ KI Sbjct: 61 YGFRTVAEKDMFLRLITVNGVGPRLAVNILSGLTPDDLHRIILQQEGFRLKSIPGVGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K V++ EQ + S+ +A SALVNLGY +A A Sbjct: 121 AERILLELRDKM-----SVKKGREA---EQPAPAAESSYG-DAYSALVNLGYRPAEAEKA 171 Query: 181 VVSVLK 186 + +K Sbjct: 172 LGKAIK 177 >gi|85703560|ref|ZP_01034664.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217] gi|85672488|gb|EAQ27345.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217] Length = 219 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 116/219 (52%), Gaps = 16/219 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I+ D+VLIDV+GV Y++YC RTLS L +G L+ + +R+D ++L Sbjct: 1 MIGRIAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPGVGGMAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I + + + GI K Sbjct: 61 FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPEGVGRAIAIGDWHSVTAAKGIGAKT 120 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNK------EQAHICSMPSFAINAISALVN 169 A R++ ELK K A+ + QD V + H + P A+SAL N Sbjct: 121 AQRVVNELKDKAPLIMAMGAAPPPAQDAGEVIETGPIQIAPVHAPTDPGAQAEALSALTN 180 Query: 170 LGY--GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 LGY G+ A V+ E AD +IR ALR ++ Sbjct: 181 LGYSPGEAAGAVAQVAGEMPEAATAD---LIRAALRRLA 216 >gi|85709397|ref|ZP_01040462.1| Holliday junction DNA helicase motor protein [Erythrobacter sp. NAP1] gi|85688107|gb|EAQ28111.1| Holliday junction DNA helicase motor protein [Erythrobacter sp. NAP1] Length = 228 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 115/203 (56%), Gaps = 5/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ + ED+ ++DVQGV Y+++C RTLS LG+ G+ CT+ + + ++ +RL Sbjct: 27 MIAKLSGRLDEIGEDWAIVDVQGVGYLVHCSARTLSALGEKGEACTVHTDLQVSENDMRL 86 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG++V + +LS ++ EL ++ ++ +A+ G+ K+ Sbjct: 87 LGFAESAERDWFRLLTQVQGVGSKVGLAILSALSTGELRDACAAGDAASVARANGVGPKL 146 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +L M+ V S + +A+SAL NLG+ A A Sbjct: 147 AGRIVNELKDKVGALPG---GGMAGV--PMGAAAPAGSASADAVSALENLGFKPAIAAQA 201 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + A + +IR+AL+ Sbjct: 202 VARATAELGEDAPEGDLIRVALK 224 >gi|254487107|ref|ZP_05100312.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101] gi|214043976|gb|EEB84614.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101] Length = 221 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D+VLIDV+GV Y++YC RTL+ L +G+ LF + +R+D ++L Sbjct: 1 MIGKITGRIDYRAPDHVLIDVRGVGYLVYCSDRTLAALPGVGEAVALFTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + + +I L + + G+ KI Sbjct: 61 FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK-------EQAHICSMPSFAIN------AISAL 167 A R++ +LK KA + ++ Q + E P+ A N A+SAL Sbjct: 121 AQRVVLDLKDKAPGVMAMTQTLAEAHGEVEAVQVIEAPEAKRRPATAPNHSAQSEALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG A AV + AD +IR AL+ ++ Sbjct: 181 GNLGYGPGDAAGAVAQAAGDMPD-ADTPTLIRAALKLLA 218 >gi|296283076|ref|ZP_06861074.1| Holliday junction DNA helicase RuvA [Citromicrobium bathyomarinum JL354] Length = 209 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 8/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ +IDV GV Y+++C RTL LG G LF + + ++ +RL Sbjct: 11 MIAKLTGTLDATGPDWAVIDVGGVGYLVHCSTRTLDALGSEGGEARLFTDLQVSENDMRL 70 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL SVQGVG++VA+ +LS ++A E+ + ++ ++A+ G+ K+ Sbjct: 71 LGFAEAAERDWFRLLTSVQGVGSKVALAILSVLSAGEVQAACASGDAAMVARANGVGPKL 130 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ KA +L K A + +A+SAL NLG+ A A Sbjct: 131 AGRIVNELQDKAGALPVAPGGVAVAAPKGGA--------SADAVSALENLGFKPAIAAKA 182 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + + A + ++IR+AL+ Sbjct: 183 VAEAMGELGEGASEGELIRVALK 205 >gi|307294738|ref|ZP_07574580.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum L-1] gi|306879212|gb|EFN10430.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum L-1] Length = 202 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y++ RTL+ LG +G+ T+ E + +D IRL Sbjct: 1 MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSEDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL SVQGVG+RVA+ +LS + EL S+ + +IA+ G+ K+ Sbjct: 61 VGFARAEERDWFRLLTSVQGVGSRVALAILSALEPAELHRSVATGDKAMIARANGVGPKL 120 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI ELK K A+ + H + +AISAL NLG+ +A+ Sbjct: 121 AQRIANELKDKIGAVPTPAGGVGGGFAAVSGGGH-------SADAISALQNLGFKPAEAS 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 +AV + + A ++RLALR Sbjct: 174 SAVAAAEGELGEDASLDALVRLALR 198 >gi|159043653|ref|YP_001532447.1| Holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12] gi|189045752|sp|A8LHP9|RUVA_DINSH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157911413|gb|ABV92846.1| holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12] Length = 224 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 19/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + D++++DV+GV Y++ C RTL+ + G LF E +R+D ++L Sbjct: 1 MIGRLSGVLVYRGRDHIVLDVRGVGYVVQCSERTLAGMPAPGGPVALFTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+++W LL SVQGVGA+ +M +LS + + +I L + + + G+ KI Sbjct: 61 YGFPTLLEKEWHRLLTSVQGVGAKASMSILSTLGVDGVGRAIALGDWGALRKAQGVGPKI 120 Query: 121 ASRIMTELKGKA-----------ISLSSVVQQDMSC---VNKEQAHICSMPSFA---INA 163 A R++ ELK K +L V++ M+ + A ++PS A A Sbjct: 121 AQRVVNELKDKGPEVMAMGGTLEAALDGVIEDGMAASEGIEPPSAARPAVPSAASDQAGA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SALVNLGYGQ +A +AV + + ++ IIR ALR ++ Sbjct: 181 LSALVNLGYGQGEAASAVATAAG--EGAVGETDIIRAALRLLA 221 >gi|148555055|ref|YP_001262637.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1] gi|166200267|sp|A5V883|RUVA_SPHWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148500245|gb|ABQ68499.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1] Length = 199 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 117/203 (57%), Gaps = 8/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + D+ ++DV GV Y+++C RTLS +G+ G LF E +R+D I L Sbjct: 1 MIARLRGVLAETSADHAVLDVGGVGYLVWCSARTLSAIGETGGDVLLFTEMQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F LL SVQGVG RVA+ +LS + A EL ++ + +IA+ G+ K+ Sbjct: 61 YGFGSAGERDSFRLLTSVQGVGGRVALAILSVLDAGELSRAVAGGDKAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ + + + + + +A+SAL NLG+ +A+ A Sbjct: 121 AMRIVNELKDKMGGVA--LGPGLGAAPAAKGGVST------DALSALANLGFRPAEASAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + +++ + A ++RLALR Sbjct: 173 VGAAIEELGDGATLDAVVRLALR 195 >gi|329113836|ref|ZP_08242607.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter pomorum DM001] gi|326696846|gb|EGE48516.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter pomorum DM001] Length = 203 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 106/189 (56%), Gaps = 4/189 (2%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 +IDV GV Y++ RTL+ L + L +ET +R+D I L+GF+ +R+WF LL S Sbjct: 18 VIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILLYGFMESAEREWFRLLTS 77 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 VQGVGA+VA+G+LS ++ ELV +++ + + + PG+ ++A RI+TEL+ KA + Sbjct: 78 VQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRLAERILTELRDKAGKMPG 137 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 ++ A S +A+ AL LG+ + +A V V+ +A + Sbjct: 138 GGSGGITI----PAMATPAGSIEADALMALAGLGFRRAEAAPVVRKVMDTHGAVATLDMV 193 Query: 198 IRLALRAIS 206 IR +L+ ++ Sbjct: 194 IRDSLKDLA 202 >gi|83943911|ref|ZP_00956368.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. EE-36] gi|83845158|gb|EAP83038.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. EE-36] Length = 222 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 118/220 (53%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D++LIDV+GV Y++YC RT++ L +G+ LF + +R+D ++L Sbjct: 1 MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + + +I L + + G+ KI Sbjct: 61 FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNK-----EQAHICSMPSFAIN------AISA 166 A R++ +LK KA ++++ + + V E A P N A+SA Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEATAEVIETAAPKRRPVAPPNQSAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG V+ E AD Q+IR AL+ ++ Sbjct: 181 LGNLGYGP-GDAAGAVAQAAGEMPEADTPQLIRAALKLLA 219 >gi|87198447|ref|YP_495704.1| Holliday junction DNA helicase RuvA [Novosphingobium aromaticivorans DSM 12444] gi|123722701|sp|Q2GBA3|RUVA_NOVAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|87134128|gb|ABD24870.1| Holliday junction DNA helicase RuvA [Novosphingobium aromaticivorans DSM 12444] Length = 204 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 117/204 (57%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ +IDV GV Y+++C +TL+ LG GD + E + + RL Sbjct: 1 MIAKLTGILDDTGPDWAVIDVNGVGYLVHCSAKTLTHLGLRGDKVVVHTEMQVSETDQRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R WF LL +VQGVG++VA+ +LS ++ EL + +S ++A+ G+ K+ Sbjct: 61 IGFTSAGERAWFRLLTAVQGVGSKVALAILSALSVEELQRACAHGDSAMVARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179 ASRI+ ELK KA L+ S V + P A +A+SAL NLG+ A++ Sbjct: 121 ASRIVNELKDKAGGLAGYA----SPVGPGGEAFVAPPGNASADAVSALQNLGFKPAVASS 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV + +K+ A + ++R+AL+ Sbjct: 177 AVAAAVKELGEDAGLNDLVRVALK 200 >gi|254460781|ref|ZP_05074197.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium HTCC2083] gi|206677370|gb|EDZ41857.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium HTCC2083] Length = 222 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 120/217 (55%), Gaps = 15/217 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ D+V++DV+GV Y++YC RTL+ L + G+ +L+ + +R+D ++L Sbjct: 1 MIGKLSGRIDYRAADHVMMDVRGVGYMVYCSDRTLAGLPRAGEVVSLYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + +I L + I G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALADVTAIKAAKGVGPKT 120 Query: 121 ASRIMTELKGK------------AISLSSVVQQDMSCVNKEQAHICSMPSFA--INAISA 166 A R++ ELK K A ++ V D V + A S+PS + A+SA Sbjct: 121 AQRVVIELKDKAPGVMAMGGGTPATAMGEVPAADDFDVIETSAVKVSVPSASAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 L NLGY +A +AV + A S +IR AL+ Sbjct: 181 LSNLGYAPSEAASAVAEAAGADPE-ATTSALIRAALK 216 >gi|149915610|ref|ZP_01904136.1| Holliday junction DNA helicase motor protein [Roseobacter sp. AzwK-3b] gi|149810502|gb|EDM70345.1| Holliday junction DNA helicase motor protein [Roseobacter sp. AzwK-3b] Length = 223 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 30/225 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I+ D+VLIDV+GV Y++YC RTL L ++G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRIDYRASDHVLIDVRGVGYLVYCSDRTLQSLPRVGEHTALYTDLVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I L + + GI K Sbjct: 61 FGFPTLIEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIALGDWNAVKAARGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI---------------- 164 A R++ ELK K L M+ A + PS A +A+ Sbjct: 121 AQRVVNELKDKLPEL-------MAMGTTPTASAPAPPSDAEDAVIEPASLAAAPPPPRSD 173 Query: 165 ------SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 SAL NLGY +A AV + + A+ + +IR ALR Sbjct: 174 AQAEALSALTNLGYAPGEAARAVAQAAESDPQ-AETAAMIRAALR 217 >gi|89053456|ref|YP_508907.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1] gi|123094354|sp|Q28TT0|RUVA_JANSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|88863005|gb|ABD53882.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1] Length = 223 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 20/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+ LIDV GV Y+++C RTL+ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYKGSDHALIDVGGVGYVVHCSDRTLAALPARGEVVALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS +++W LL SVQGVGA+ +M +L + +I L ++ I PG+ K+ Sbjct: 61 FGFLSPYEKEWHRLLTSVQGVGAKASMAILGTLGVEGAARAITLGDATAIKAAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSV---------------VQQDMSCVNKEQAHICSMPS--FAINA 163 A R++ ELK KA ++ ++ + + Q P+ A Sbjct: 121 AQRVVMELKDKAPAVMAMGGTLDDAMDDVVDDMPGESAAPAPAPQPRAPKRPASNAQAEA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A AV + N ++IR ALR ++ Sbjct: 181 LSALQNLGYGPSDAAQAVAQAAESASNT---PELIRAALRLLA 220 >gi|220935403|ref|YP_002514302.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7] gi|254767396|sp|B8GUJ5|RUVA_THISH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219996713|gb|ACL73315.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7] Length = 201 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L+DVQGV Y I P+ T L + G TL H+R+D L Sbjct: 1 MIGRLRGELVSKQPPFLLLDVQGVGYEIEAPLSTFYDLPEPGGQVTLHTHLHVREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +R F L V GVGA++A+ +LS +TA+E ++ + + ++PGI K Sbjct: 61 YGFASESERALFRSLIKVTGVGAKMALAILSGMTASEFSRCVMDGDVASLVRLPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + SL + V K A P +A+SALV+LGY + Q + Sbjct: 121 AERLVVEMRDRLGSLPAAVTL---TGGKPAAAAARAPDPVSDAVSALVSLGY-KPQEASR 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 ++S ++ E ++D +IRLAL+A Sbjct: 177 LISAVEGEAERSED--LIRLALKA 198 >gi|83954484|ref|ZP_00963195.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. NAS-14.1] gi|83840768|gb|EAP79939.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. NAS-14.1] Length = 222 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D++LIDV+GV Y++YC RT++ L +G+ LF + +R+D ++L Sbjct: 1 MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + + +I L + + G+ KI Sbjct: 61 FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNK-----EQAHICSMPSFAIN------AISA 166 A R++ +LK KA ++++ + + V E A P N A+SA Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEAAAEVIETAAPKRRPVAPPNQSAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG V+ E A+ Q+IR AL+ ++ Sbjct: 181 LGNLGYGP-GDAAGAVAQAAGEMPEAETPQLIRAALKLLA 219 >gi|326386113|ref|ZP_08207737.1| Holliday junction DNA helicase RuvA [Novosphingobium nitrogenifigens DSM 19370] gi|326209338|gb|EGD60131.1| Holliday junction DNA helicase RuvA [Novosphingobium nitrogenifigens DSM 19370] Length = 206 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 115/203 (56%), Gaps = 1/203 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ +IDV GV Y+++ RTL+ LG GD + E + + +RL Sbjct: 1 MIAKLTGLLDDTGPDWAVIDVNGVGYLVHASARTLAHLGNRGDRVVIHTELQVSETDMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R WF LL VQGVG++VA+ +LS +T EL + +S ++A+ G+ K+ Sbjct: 61 IGFASAGERAWFRLLTVVQGVGSKVALAILSALTVDELQRACAGGDSAMVARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK KA L+ + +A + S S + +A+SAL NLG+ A TA Sbjct: 121 ASRIVNELKDKAGGLAGLSGGAGITAEPGEAPVVS-GSASADAVSALQNLGFKPAVAATA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V +++ A ++R+AL+ Sbjct: 180 VTKAIEELGEDASLGDLVRVALK 202 >gi|302384291|ref|YP_003820114.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides ATCC 15264] gi|302194919|gb|ADL02491.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides ATCC 15264] Length = 205 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E + LID GV Y++ C RTL L GD TL V + +D R Sbjct: 1 MIGRLRGVVAEIEEGHCLIDCAGVGYVVACGARTLGRLPAPGDEATLHVHSQWSEDAGPR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ +R+ F L +QGVG + A+ VL + EL ++ + I + G+ K Sbjct: 61 LYGFLARDERRAFTTLLGIQGVGPKAALSVLDVLPPGELAGAVARDDKAAIGRANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELKGK + S ++ V+ E A +PS A+SAL+ LG + A Sbjct: 121 LALRIVTELKGKPLGDVSFTPS-VAGVHAEVA--PPVPSVTGEAVSALLGLGVAEVNARR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV L + + A+ S +IR AL+ + Sbjct: 178 AVDQALIRLGDAAELSAVIRAALQELG 204 >gi|260426467|ref|ZP_05780446.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45] gi|260420959|gb|EEX14210.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45] Length = 221 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G IE ED+VLIDV+GV YI+YC R L+ L + G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRIEYKGEDHVLIDVRGVGYIVYCSDRVLASLPRPGEAAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++WF LL +VQGVGA+ ++ +L + + +I L ++ I GI K Sbjct: 61 YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDANAIKAARGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHI----------CSMPSFAINAISAL 167 R++ ELK KA + ++ ++ E A I S A+SAL Sbjct: 121 GLRVVNELKDKAPMVMAMGAGTIASAGPEVIDDAPIPSAPAQAQAAPSSAPAQSEALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGY +A AV + A +++IR ALR ++ Sbjct: 181 SNLGYAPGEAAAAVAQAAGEAPT-ATTAELIRAALRLLA 218 >gi|84501645|ref|ZP_00999817.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis HTCC2597] gi|84390266|gb|EAQ02825.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis HTCC2597] Length = 220 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I+ D+VLIDV+GV Y+++ RTL+ L G+ L+ E +R+D ++L Sbjct: 1 MIGRLAGRIDMRGPDHVLIDVRGVGYVVFVSDRTLATLPGAGEAAALYTELIVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++WF LL SVQGVGA+ A+ +L + A L +I L + + GI K Sbjct: 61 YGFPTLVEKEWFRLLTSVQGVGAKGALAILGALGAEGLGRAIALGDQASVKAAKGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------------MPSFAINAISAL 167 A RI+ ELK KA ++ ++ + + + S A+SAL Sbjct: 121 AQRIVLELKDKAPAVMAMGGAAPTSAAPAETEVVEPVPAPAATAAPASTASAQAEALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG +A AV + AD + +IR ALR ++ Sbjct: 181 GNLGYGPSEAAAAVAEAAGETPR-ADTAALIRSALRRLA 218 >gi|114798884|ref|YP_758880.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC 15444] gi|114739058|gb|ABI77183.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC 15444] Length = 207 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 3/178 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG++KG + + D+VLIDV GV Y+ R L+ L + GD T +ET + + I L Sbjct: 2 IIGRLKGEVAAIGLDHVLIDVNGVGYVALAGTRLLARL-QTGDAITAHIETRVTESSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F +D +R WF+ LQ V GV + A+ +L ++ +++++I L ++ + GI K+ Sbjct: 61 FAFATDEERAWFVRLQDVPGVAGKSALAILDGLSPADIMDAIALGDAGAFTRAKGIGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK-EQAHICSMPSFAIN-AISALVNLGYGQDQ 176 RI+TEL GKA L + +++ V A S + A A+SALVNLGY Q + Sbjct: 121 GERIVTELAGKAPPLGRFGKFEVAAVAGLASAQPASAATGARGEAVSALVNLGYSQSE 178 >gi|163745818|ref|ZP_02153177.1| Holliday junction DNA helicase motor protein [Oceanibulbus indolifex HEL-45] gi|161380563|gb|EDQ04973.1| Holliday junction DNA helicase motor protein [Oceanibulbus indolifex HEL-45] Length = 225 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 18/220 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ D+VLIDV+GV Y++Y RT++ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKLSGRIDYRAADHVLIDVRGVGYLVYVSDRTMAALPSVGEVVALYTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I L + + GI KI Sbjct: 61 FGFQTLVEKEWHRLLTSVQGVGAKASLAILGTLGPDGVSRAIALGDWNAVKAAKGIGPKI 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMS------------CVNKEQAHICSMPSFAI--NA 163 A R++ +LK KA ++++ V M +A + P+ + A Sbjct: 121 AQRVVLDLKDKAPGVMAMTGTVADAMGEAEAAADESVIEAATPRRAPKPAAPNASAQSEA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 +SAL NLGYG V+ E AD +IR AL+ Sbjct: 181 LSALGNLGYGP-GDAAGAVAQAAGEMPDADTPTLIRAALK 219 >gi|149185526|ref|ZP_01863842.1| probable holliday junction DNA helicase protein [Erythrobacter sp. SD-21] gi|148830746|gb|EDL49181.1| probable holliday junction DNA helicase protein [Erythrobacter sp. SD-21] Length = 201 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 114/203 (56%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y+++C +TLS LG+ G+ CT++ + + ++ +RL Sbjct: 1 MIAKLKGLLDETGADWAVIDVSGVGYLVHCSTKTLSKLGEKGEACTVYTDLQVSENDMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG++VA+ +LS ++ E+ ++ ++ +A+ G+ K+ Sbjct: 61 LGFAEAAERDWFRLLTQVQGVGSKVALAILSALSTGEVQQACSNGDAATVARAQGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +L + + +A+SAL NLG+ A A Sbjct: 121 AGRIVNELKDKAGALPGGGVGGGTAPATPAGGASA------DAVSALENLGFKPAVAARA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + + A + +IR+AL+ Sbjct: 175 VAAAQGELGEGASEGDLIRVALK 197 >gi|259417974|ref|ZP_05741893.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B] gi|259346880|gb|EEW58694.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B] Length = 229 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 87/135 (64%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+V+IDV+GV YI+YC RTL+ L +G+ L+ E +R+D ++L Sbjct: 1 MIGKLTGRLEYRAPDHVMIDVRGVGYIVYCSDRTLASLPSVGEAVQLYTELLVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++++W LL SVQGVGA+V++ +LS + + +I L + + G+ K Sbjct: 61 FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISL 135 A RI+ +LK KA S+ Sbjct: 121 AQRIVLDLKDKAPSV 135 >gi|189183542|ref|YP_001937327.1| Holliday junction DNA helicase RuvA [Orientia tsutsugamushi str. Ikeda] gi|229560111|sp|B3CRA9|RUVA_ORITI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189180313|dbj|BAG40093.1| holliday junction DNA helicase RuvA [Orientia tsutsugamushi str. Ikeda] Length = 205 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 122/208 (58%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 MI K+KG ++ + + Y++ID+ GV Y +Y +TL L K G +LF+ETH+R+D+I Sbjct: 1 MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL + ++ F +LQSV G+G ++A+ +LS +T +L +I QN + I G+ K Sbjct: 61 LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + R+M EL+ K +++++ +S + +I S +AI+AL+ LG + Sbjct: 121 LIDRLMIELRDKVANINTIANNTSLATLSTDSNTHDNILS------DAITALIALGISRA 174 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 +AT + + +I+ + +++R AL+ Sbjct: 175 EATQILSDIYALSPSISVN-ELVRTALQ 201 >gi|148284809|ref|YP_001248899.1| Holliday junction DNA helicase motor protein [Orientia tsutsugamushi str. Boryong] gi|166230578|sp|A5CEJ4|RUVA_ORITB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146740248|emb|CAM80579.1| Holliday junction DNA helicase [Orientia tsutsugamushi str. Boryong] Length = 205 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 109/183 (59%), Gaps = 11/183 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 MI K+KG ++ + + Y++ID+ GV Y +Y +TL L K G +LF+ETH+R+D+I Sbjct: 1 MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL + ++ F +LQSV G+G ++A+ +LS +T +L +I QN + I G+ K Sbjct: 61 LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + R+M EL+ K +++++ +S + +I S +AI+AL+ LG + Sbjct: 121 LIDRLMIELRDKVANINTIANNTSLAILSTDSNTHDNILS------DAITALIALGISRA 174 Query: 176 QAT 178 +AT Sbjct: 175 EAT 177 >gi|241761371|ref|ZP_04759459.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374278|gb|EER63775.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 213 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D +IDV GV Y++ R L +I T+ +ET +R+D I L Sbjct: 1 MIARLVGFLVEKNSDSAIIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S L+R WF LL SVQGVG + A+ +L+ +T + +I + +I + GI KI Sbjct: 61 FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ ELK K AI+L S + D V ++ A +F +A+SAL+NLG+ Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 +A V ++ + A ++RLALR Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR 208 >gi|331016439|gb|EGH96495.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 202 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHVDPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|56551051|ref|YP_161890.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ZM4] gi|81355594|sp|Q5NR75|RUVA_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56542625|gb|AAV88779.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ZM4] Length = 213 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D +IDV GV Y++ R L +I T+ +ET +R+D I L Sbjct: 1 MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S L+R WF LL SVQGVG + A+ +L+ +T + +I + +I + GI KI Sbjct: 61 FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ ELK K AI+L S + D V ++ A +F +A+SAL+NLG+ Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFMADAVSALLNLGFKPA 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 +A V ++ + A ++RLALR Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR 208 >gi|330872653|gb|EGH06802.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 202 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V +K+ + AD +IR AL+ + Sbjct: 180 VSAVKEKDLSSAD---LIRRALKGM 201 >gi|260753286|ref|YP_003226179.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552649|gb|ACV75595.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 213 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D +IDV GV Y++ R L +I T+ +ET +R+D I L Sbjct: 1 MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S L+R WF LL SVQGVG + A+ +L+ +T + +I + +I + GI KI Sbjct: 61 FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRSNGIGPKI 120 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ ELK K AI+L S + D V ++ A +F +A+SAL+NLG+ Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 +A V ++ + A ++RLALR Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR 208 >gi|294010085|ref|YP_003543545.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium japonicum UT26S] gi|292673415|dbj|BAI94933.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium japonicum UT26S] Length = 202 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y++ RTL+ LG +G+ T+ E + D IRL Sbjct: 1 MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSDDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG+RVA+ +LS + EL ++ + +IA+ G+ K+ Sbjct: 61 VGFARAEERDWFRLLTGVQGVGSRVALAILSALEPVELHRAVAAGDKAMIARANGVGPKL 120 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI ELK K A + + H + +AISAL NLG+ +A+ Sbjct: 121 AQRIANELKDKIGAAPMPAGAVGAGFAALPTGGH-------SADAISALQNLGFKPAEAS 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 AV + ++ A ++RLALR Sbjct: 174 IAVAAAEEELGEDASLDALVRLALR 198 >gi|258543669|ref|YP_003189102.1| Holliday junction DNA helicase RuvA [Acetobacter pasteurianus IFO 3283-01] gi|256634747|dbj|BAI00723.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-01] gi|256637803|dbj|BAI03772.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-03] gi|256640857|dbj|BAI06819.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-07] gi|256643912|dbj|BAI09867.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-22] gi|256646967|dbj|BAI12915.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-26] gi|256650020|dbj|BAI15961.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-32] gi|256653010|dbj|BAI18944.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656064|dbj|BAI21991.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-12] Length = 202 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 5/186 (2%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 +IDV GV Y++ RTL+ L + L +ET +R+D I L+GF+ +R+WF LL S Sbjct: 18 VIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILLYGFMESAEREWFRLLTS 77 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 VQGVGA+VA+G+LS ++ ELV +++ + + + PG+ ++A RI+TEL+ KA + Sbjct: 78 VQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRLAERILTELRDKAGKMPG 137 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 A S +A+ AL LG+ + +A V V+ A + Sbjct: 138 GGGGITIPAMATPAG-----SIEADALMALAGLGFRRAEAAPVVRKVMDAHGAAATLDLV 192 Query: 198 IRLALR 203 IR +L+ Sbjct: 193 IRDSLK 198 >gi|330964824|gb|EGH65084.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 202 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|229592301|ref|YP_002874420.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens SBW25] gi|312962759|ref|ZP_07777247.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] gi|259495652|sp|C3JYS8|RUVA_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229364167|emb|CAY51821.1| holliday junction helicase subunit B [Pseudomonas fluorescens SBW25] gi|311282976|gb|EFQ61569.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] Length = 203 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 115/205 (56%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPITLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR +F L + GVG ++A+ ++S + ELV ++ Q++ + ++PG+ K Sbjct: 61 YGFIGKRDRDFFRELIRLNGVGPKLALALMSSLEVDELVRAVSAQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + V N+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEVVPSMFALVPNQPDMPAGQVASAESDAVSALISLGYKPQEASKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K+KN++ + +IR AL+ + Sbjct: 181 VSAI--KDKNLSSED-MIRRALKGM 202 >gi|28871123|ref|NP_793742.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato str. DC3000] gi|213969185|ref|ZP_03397324.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato T1] gi|301384820|ref|ZP_07233238.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato Max13] gi|302063526|ref|ZP_07255067.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato K40] gi|302130610|ref|ZP_07256600.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999572|sp|Q87Y34|RUVA_PSESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28854373|gb|AAO57437.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato str. DC3000] gi|213926183|gb|EEB59739.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato T1] Length = 202 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHADPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|99082212|ref|YP_614366.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040] gi|99038492|gb|ABF65104.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040] Length = 229 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 55/135 (40%), Positives = 87/135 (64%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+V+IDV+GV YI+YC RTL+ L +G+ L+ E +R+D ++L Sbjct: 1 MIGKLTGRLDYKTPDHVMIDVRGVGYIVYCSDRTLASLPAVGEAVQLYTELLVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++++W LL SVQGVGA+V++ +LS + + +I L + + G+ K Sbjct: 61 FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISL 135 A RI+ +LK KA S+ Sbjct: 121 AQRIVLDLKDKAPSV 135 >gi|282164971|ref|YP_003357356.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella paludicola SANAE] gi|282157285|dbj|BAI62373.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella paludicola SANAE] Length = 196 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 116/204 (56%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQIR 59 MI ++G +E + ++IDV GV Y + P + G+ C +F+ T+ R+ D Sbjct: 1 MIAHLEGRLEYKGHERIVIDVGGVGYDVRVPTHLYDLIPAEGERCKVFIHTYFREEDGTS 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + DR++F LL +V G+G +VA+G++S ITA++L E+I+++++K + ++ G+ K Sbjct: 61 LYGFTTWQDREFFKLLMTVSGIGPKVALGIMSSITASDLAEAIVVEDAKALTRVNGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A R++ ELK K +MS N+ + M S +A SALV LGY + A+ Sbjct: 121 MAQRLILELKDKV--------AEMSIENRAKKPGADMTSE--DATSALVALGYSRQAASA 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ ++I+ +LR Sbjct: 171 AVARARDASPGLSKVEELIKTSLR 194 >gi|299135919|ref|ZP_07029103.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8] gi|298602043|gb|EFI58197.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8] Length = 198 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + V++D GV Y + I T + LG G L V TH+R+D + L Sbjct: 1 MIAYLRGRILSKASNAVIVDCNGVGYELAISITTFTELGAEGAEAKLHVHTHVREDALAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L ++ G+G ++A+ VLS I+A LV +I + + +IPGI K Sbjct: 61 FGFAELTEKRLFEKLLTISGIGPKLAITVLSGISAERLVGAIRAGDHATLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K DM E S+ + A + +SALVNLGY + A A Sbjct: 121 AERVVLELKDK--------LDDMVGSTPETGARFSLGTVADDVLSALVNLGYARPVAQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K D Q+ R A+ A+ Sbjct: 173 VETAAKDAAVAGDFEQLFRAAMSAV 197 >gi|254451002|ref|ZP_05064439.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 238] gi|198265408|gb|EDY89678.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 238] Length = 231 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 24/226 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G +E D+VLIDV+GV YI++ R ++ L ++G+ +L+ + +R+D ++L Sbjct: 1 MIGRIAGRLEYRAIDHVLIDVKGVGYIVFVSDRVMATLPRVGEGVSLYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + SI + + +A G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWAAVATAKGVGPKT 120 Query: 121 ASRIMTELKGKA----------------------ISLSSVVQQDM-SCVNKEQAHICSMP 157 A +++ +LK KA +S + DM + V++ Sbjct: 121 AKKVILDLKDKAHGVMAMAGTAAGAAPAAGGGASVSADAETDTDMHAVVDRYDGTAAGNG 180 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +SAL NLGYG A AV E + AD + +IR AL+ Sbjct: 181 AAQSETLSALSNLGYGPSDAAGAVAQA-AVENDGADTATLIRAALK 225 >gi|145590058|ref|YP_001156655.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189045760|sp|A4T027|RUVA_POLSQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145048464|gb|ABP35091.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 193 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + ++ +L+D QGV Y I P+ TL L ++ TL +R+D +L Sbjct: 1 MIGRIQGTLVSVHPPRLLVDCQGVGYEIDVPMSTLYQLPEVNQKITLLTHFQVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++++R+ F L + GVG+R A+ VLS ++ EL ++I LQ + + Q+PGI K Sbjct: 61 FGFATEIEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELKGK + D+ + I + + AL++LGY + +A A Sbjct: 121 AERLCLELKGK-------LAPDLGITGGKPQAIEA----TSEVLQALLSLGYSEKEALLA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + E +++D IR+ L+ +S Sbjct: 170 LKQI-PPETSVSDG---IRMGLKYLS 191 >gi|159899035|ref|YP_001545282.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC 23779] gi|229560066|sp|A9AZL0|RUVA_HERA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|159892074|gb|ABX05154.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC 23779] Length = 197 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ + +D V+IDV GV I P L+ +G IGD L+ H+R+D + L Sbjct: 1 MIASVRGVVQLIGQDQVVIDVHGVGLAIAVPRTVLATIGAIGDTAQLYTHLHVREDMLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S R F LL V G+G +VA+ +LS T EL +I ++ +++++PGI K Sbjct: 61 FGFSSPAQRALFELLLGVSGIGPKVALALLSAATPEELQHAIAREDITMLSKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINA--ISALVNLGYGQDQA 177 A+R++ ELKGK ++++ Q + + P A+N I L +LGY +A Sbjct: 121 AARLVLELKGK-FGVATISPQ-----------LSTNPGLLALNTELIDILTSLGYSTTEA 168 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 A+ ++ AD + +RLAL+ Sbjct: 169 QAALNALPADAP--ADTEERLRLALQ 192 >gi|225410073|ref|ZP_03761262.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme DSM 15981] gi|225042421|gb|EEG52667.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme DSM 15981] Length = 207 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 114/209 (54%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + ED ++++ GV I+ P+ L L IG T++ +R+D + L Sbjct: 1 MISYIKGPLTAIEEDVIVVEAGGVGMGIHVPLSVLDRLPGIGREVTVYTYFQVREDAMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ DR F L V GVG + A+G+LS +T +L +I+ ++K I++ PGI K Sbjct: 61 YGFLNRQDRDMFRQLIGVNGVGPKAALGILSTMTPDDLRMAIVTGDAKAISRAPGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHI--CSMPSFAINAISALVNLGYGQDQA 177 A R++ +LK K IS+ ++ + C A + SM A A+ ALV LGY +A Sbjct: 121 AQRLILDLKDK-ISMEEMLGNLALPCDGGASAALGTASMGEAAKEAVQALVALGYSNMEA 179 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V E A+D +++ +LR +S Sbjct: 180 NKAVKQVEVTETMTAED--VLKASLRYLS 206 >gi|310816584|ref|YP_003964548.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium vulgare Y25] gi|308755319|gb|ADO43248.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium vulgare Y25] Length = 218 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 10/182 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G I D +L+DV+GV YII+ R ++ L +G+ L+ + +R+D ++L Sbjct: 1 MIGWLSGRIIEKSGDQILLDVRGVGYIIHVSDRVMASLPGVGEAVALYTDLLVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +++W LL VQGVGA+ A+ ++ + L ++ L + IA+ GI K Sbjct: 61 FGFTSRTEKEWHKLLMGVQGVGAKAALAIMGALGGDGLSRALALGDWSSIAKAKGIGPKT 120 Query: 121 ASRIMTELKGKAI----------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 A R++ ELKGKA SL +V++ D + + +A+SAL NL Sbjct: 121 AQRVVMELKGKAPTVMAMSGGAESLDAVIEDDGPAPKPAARRARPVSNAQPDALSALGNL 180 Query: 171 GY 172 GY Sbjct: 181 GY 182 >gi|119383447|ref|YP_914503.1| Holliday junction DNA helicase motor protein [Paracoccus denitrificans PD1222] gi|166230580|sp|A1AZW3|RUVA_PARDP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119373214|gb|ABL68807.1| Holliday junction DNA helicase RuvA [Paracoccus denitrificans PD1222] Length = 223 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 102/187 (54%), Gaps = 15/187 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I +D+VLIDV+GV YI++ RT + L G L+ E +R+D ++L Sbjct: 1 MIGRIAGVILHRAQDHVLIDVRGVGYIVHVSERTAANLPPAGQATALYTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+++W LL SVQGVGA+VA+ +L + L ++ L + + + PG+ K+ Sbjct: 61 FGFPTLLEKEWHRLLTSVQGVGAKVALAILGTLGPDGLSRALALGDWSALRKAPGVGPKL 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQ------------AHICSMPSFAINAIS 165 A R++ ELK KA ++L + D + + + S +A+S Sbjct: 121 AQRVVMELKDKAPAVMALGGALTVDPGPLPEVELVEAAVPAPVPAKAAPSSAQATADALS 180 Query: 166 ALVNLGY 172 AL NLGY Sbjct: 181 ALGNLGY 187 >gi|257487010|ref|ZP_05641051.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009348|gb|EGH89404.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 202 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ S+ S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAESVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|104783073|ref|YP_609571.1| Holliday junction DNA helicase RuvA [Pseudomonas entomophila L48] gi|123079106|sp|Q1I6E8|RUVA_PSEE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|95112060|emb|CAK16787.1| holliday junction helicase subunit A [Pseudomonas entomophila L48] Length = 205 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEPVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ V+ ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASVLVRVPGVGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK KA S + + V+ + S S +A+SALV+LGY +A+ Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEAS 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ ++ K+K ++IR +L+ + Sbjct: 178 KAIAAI--KDKAGLSSEELIRRSLKGM 202 >gi|145636553|ref|ZP_01792221.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittHH] gi|145270378|gb|EDK10313.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittHH] Length = 204 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 106/211 (50%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-------AISALVNLGYG 173 A R++ ELKGK + Q D E HI S+PS + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGIKQSDFFV---ESTHIRSVPSIEPHTENSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V K E Q+IR AL+A Sbjct: 175 PSEAEKMVKRVAKPE---LTSEQVIREALKA 202 >gi|114765389|ref|ZP_01444504.1| Holliday junction DNA helicase motor protein [Pelagibaca bermudensis HTCC2601] gi|114542232|gb|EAU45262.1| Holliday junction DNA helicase motor protein [Roseovarius sp. HTCC2601] Length = 224 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 83/132 (62%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G IE ED++LIDV+GV Y++YC R L+ L G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRIEYKGEDHLLIDVRGVGYVVYCSDRVLAGLPGPGEAAALYTDLMVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++WF LL +VQGVGA+ ++ +L + + +I L + I GI K Sbjct: 61 YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDGTAIKAAKGIGPKT 120 Query: 121 ASRIMTELKGKA 132 A R++ ELK KA Sbjct: 121 AQRVVNELKDKA 132 >gi|237800218|ref|ZP_04588679.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023075|gb|EGI03132.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 202 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G+I ++++DV GV Y + P+ TL L +G+ TL+ +R+D L Sbjct: 1 MIGRLRGSIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLYTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEA-LPGTFALVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|149203738|ref|ZP_01880707.1| Holliday junction DNA helicase motor protein [Roseovarius sp. TM1035] gi|149142855|gb|EDM30897.1| Holliday junction DNA helicase motor protein [Roseovarius sp. TM1035] Length = 220 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 13/218 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I+ D+VLIDV+GV Y++YC RTLS L +G L+ + +R+D ++L Sbjct: 1 MIGRVAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPAVGGMAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I + + + GI K Sbjct: 61 FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIAIGDWNSVTAAKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSV------------VQQDMSCVNKEQAHICSMPSFAINAISALV 168 A R++ ELK KA + ++ + + + + P A+SAL Sbjct: 121 AQRVVNELKDKAPLVMAMGAAPAPMPAAPDTDEVIETASVPTPPVPPSPGAQAEALSALT 180 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGY +A AV V E A +++IR ALR ++ Sbjct: 181 NLGYTPGEAAGAVAQV-AGETPEATTAELIRAALRRLA 217 >gi|110801789|ref|YP_699225.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101] gi|122956588|sp|Q0SRN2|RUVA_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110682290|gb|ABG85660.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101] Length = 201 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 8/189 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+GD L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYRIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K Sbjct: 61 YGFTTKEELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQA 177 A RI+ ELK K L+S +Q + +N + SF IN +SAL+ LGY + +A Sbjct: 121 AQRIILELKDKLKPDELTSEEEQLIEGINDNSDY-----SFNINETLSALMALGYTEKEA 175 Query: 178 TTAVVSVLK 186 A+ V K Sbjct: 176 QKALEKVDK 184 >gi|197106547|ref|YP_002131924.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum HLK1] gi|229560113|sp|B4R9Z1|RUVA_PHEZH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|196479967|gb|ACG79495.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum HLK1] Length = 204 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 109/204 (53%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVET-HMRQDQIR 59 MIG+++G + + E+ LIDV GV Y++ C RTLS L +G+ + VE+ Q + Sbjct: 1 MIGRLRGLVAEVGEEDALIDVMGVGYVVRCGSRTLSRLPAVGEETVIHVESVFGEQTGVT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R+ F+ L+++QGVG + A+ VL + EL ++ ++ +A+ G+ K Sbjct: 61 LYGFLGRDERRAFVTLRTIQGVGPKAALAVLDVLAPPELAAAVAREDKAAVARANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+ ELK K IS V + + S A A++AL+ LG + QA Sbjct: 121 LAQRIVVELKDKPISDGPVAAFHAQATTPQPIKV----SAAGEAVAALMGLGIAEPQARR 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V S + A+ +I+ AL+ Sbjct: 177 VVESAALRLGEEAEPPALIKAALQ 200 >gi|254360614|ref|ZP_04976763.1| crossover junction endonuclease RuvA [Mannheimia haemolytica PHL213] gi|153091154|gb|EDN73159.1| crossover junction endonuclease RuvA [Mannheimia haemolytica PHL213] Length = 201 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ +I + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + Q D V+ EQ + P A A+ AL+ LGY A Sbjct: 121 AERLLVELKGK---FKGMAQSDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + V K+ A Q+IR AL+ Sbjct: 178 MIKKV---NKSGATSEQLIREALK 198 >gi|33594301|ref|NP_881945.1| Holliday junction DNA helicase motor protein [Bordetella pertussis Tohama I] gi|33602977|ref|NP_890537.1| Holliday junction DNA helicase motor protein [Bordetella bronchiseptica RB50] gi|44888431|sp|Q7VTT9|RUVA_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|44888438|sp|Q7WGB6|RUVA_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33564376|emb|CAE43681.1| holliday junction DNA helicase [Bordetella pertussis Tohama I] gi|33568608|emb|CAE34366.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50] gi|332383712|gb|AEE68559.1| Holliday junction DNA helicase RuvA [Bordetella pertussis CS] Length = 190 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV GV Y I P+ TL L + G TLF +R+D L Sbjct: 1 MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ EL ++I LQ + + ++PGI K Sbjct: 61 YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK L + + + Q+ I ++AL+ LGY ++ A Sbjct: 121 AERLLLEMRGK---LGADIGATPHAASGHQSDI----------LNALLALGYSDKESQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LKK + D S+ IRLAL+A+ Sbjct: 168 ----LKKLPDGVDVSEGIRLALKAL 188 >gi|289626496|ref|ZP_06459450.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650942|ref|ZP_06482285.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aesculi str. 2250] gi|330868612|gb|EGH03321.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 202 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAETDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|297170981|gb|ADI21996.1| holliday junction resolvasome, DNA-binding subunit [uncultured myxobacterium HF0200_01L06] Length = 202 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +++DV GV Y + P+ T + L G +L+V TH+R+D L Sbjct: 1 MIARLEGTLFEKTPTRIVVDVSGVGYELSVPLSTFATLPDEGKTVSLWVHTHVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F LL VG R+A +LS I L +++ + KV+ +PGI K+ Sbjct: 61 YGFATTRERDVFHLLLRANRVGPRLAQTILSGIDPAALCDALGRGDVKVLRGVPGIGPKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ A L+ + S E + P A A+SAL+NLGY + +A Sbjct: 121 AERMVVELRDAASELAGALG---SAGPSEGRPV--RPDPAEEALSALLNLGYPRSKAERT 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + + + + A Q+IR ALR++S Sbjct: 176 IEAAIGETGEDASIEQVIRAALRSLSA 202 >gi|78221965|ref|YP_383712.1| Holliday junction DNA helicase RuvA [Geobacter metallireducens GS-15] gi|123729330|sp|Q39XN7|RUVA_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78193220|gb|ABB30987.1| Holliday junction DNA helicase subunit RuvA [Geobacter metallireducens GS-15] Length = 199 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 96/174 (55%), Gaps = 6/174 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D ++IDV GV Y + P T L G +L + TH+++D I L Sbjct: 1 MIARLTGMLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPDEGKTVSLSIYTHVKEDAISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++F +L SV G+G ++A +LS I EL +I+ N ++ IPGI K Sbjct: 61 FGFRTVAEKEFFQVLISVSGIGPKMARDILSNIQPDELAGAILQGNLVRLSSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ ELK K V + D++ KE A + P A + SALVNLGY + Sbjct: 121 AERLVLELKEK------VRKMDVAPSTKEAAPSEAPPEVADDVASALVNLGYKE 168 >gi|261493369|ref|ZP_05989895.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496635|ref|ZP_05993015.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307838|gb|EEY09161.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311013|gb|EEY12190.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 201 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ +I + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + Q D V+ EQ + P A A+ AL+ LGY A Sbjct: 121 AERLLVELKGK---FKRMAQSDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + V K+ A Q+IR AL+ Sbjct: 178 MIKKV---NKSGATSEQLIREALK 198 >gi|145632564|ref|ZP_01788298.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 3655] gi|229845014|ref|ZP_04465151.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 6P18H1] gi|144986759|gb|EDJ93311.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 3655] gi|229812148|gb|EEP47840.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 6P18H1] Length = 204 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 105/210 (50%), Gaps = 16/210 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-------AISALVNLGYG 173 A R++ ELKGK V Q D E HI S+PS + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPSVPSIEPSVENSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALR 203 +A V V K E Q+IR AL+ Sbjct: 175 PSEAEKMVKRVAKPE---LTSEQVIREALK 201 >gi|260431115|ref|ZP_05785086.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis ITI-1157] gi|260414943|gb|EEX08202.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis ITI-1157] Length = 223 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 16/221 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ D++LIDV+GV YI+YC RT++ L +G+ +L+ + +R+D ++L Sbjct: 1 MIGKLTGRIDYRAADHLLIDVRGVGYIVYCSDRTMAALPGVGEAVSLYTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFLSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWGAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----------- 166 A RI+ +LK KA +++ V + M E + A Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPVAEVVEPADPAPAPVRAPKPGAGAASAGALS 180 Query: 167 -LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG +A +AV + A ++++IR AL+ ++ Sbjct: 181 ALSNLGYGPSEAASAVAEAAANLPD-AGEAELIRAALKLLA 220 >gi|171464161|ref|YP_001798274.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229560114|sp|B1XS25|RUVA_POLNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171193699|gb|ACB44660.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 193 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 23/210 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + ++ +L+D QG+ Y + P+ TL L + G TL +R+D +L Sbjct: 1 MIGRIQGTLVSVHPPRLLVDCQGISYEVDVPMSTLYQLPQAGQKITLLTHFQVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R+ F L + GVG+R A+ VLS ++ EL ++I LQ + + Q+PGI + Sbjct: 61 FGFATETEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKRT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-NKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R+ ELKGK + D+ K QA S + AL+ LGY + +A Sbjct: 121 AERLCLELKGK-------LAPDLGVAGGKPQAIETSS-----EVLQALLALGYSEKEALL 168 Query: 180 AVVSVLKKEKNIADDSQI---IRLALRAIS 206 A+ K I D+ I IR+ L+ +S Sbjct: 169 AL-------KQIPADTSISDGIRMGLKYLS 191 >gi|86139156|ref|ZP_01057726.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193] gi|85824000|gb|EAQ44205.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193] Length = 229 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV Y++YC RT+ L +G+ TL+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRTADHVLIDVRGVGYLVYCSERTMMTLPGVGEPVTLYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFTSLVEKEWHRLLTSVQGVGAKVSLAILGTLGPDGVSRAIALGDWGSVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAIS----------------LSSVVQQDMSCVNKEQAH-----ICSMPSF 159 A RI+ +LK KA L +VV+ K+ A + Sbjct: 121 AQRIVLDLKDKAPGVMAMGGSLPDAIEGADLEAVVEPVEPAAPKKTARKAASKPSGAAAA 180 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+SAL NLGY A +AV + + AD+S +IR ALR ++ Sbjct: 181 SAGALSALGNLGYSPSDAASAVAEAAGENPD-ADESALIRAALRLLA 226 >gi|289674670|ref|ZP_06495560.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. syringae FF5] gi|302187157|ref|ZP_07263830.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. syringae 642] gi|330950609|gb|EGH50869.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae Cit 7] Length = 202 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|126737218|ref|ZP_01752953.1| Holliday junction DNA helicase motor protein [Roseobacter sp. SK209-2-6] gi|126721803|gb|EBA18506.1| Holliday junction DNA helicase motor protein [Roseobacter sp. SK209-2-6] Length = 228 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 21/226 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +D++LIDV GV YI+YC RTL+ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRTQDHILIDVHGVGYIVYCSERTLAALPGTGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFTSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNK---EQAHICSMPSFAINA----------- 163 A RI+ +LK KA +++ V M E+A + S A Sbjct: 121 AQRIVLDLKDKAPAVMAMGGSVADAMDGPGLEVIEEAEPAATKSARKTAPKKPSGAAAAS 180 Query: 164 ---ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A AV + AD++++IR ALR ++ Sbjct: 181 AGALSALGNLGYGPSDAAAAVAEAAATYPD-ADEAELIRAALRLLA 225 >gi|26987951|ref|NP_743376.1| Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440] gi|148546488|ref|YP_001266590.1| Holliday junction DNA helicase RuvA [Pseudomonas putida F1] gi|37999646|sp|Q88NJ1|RUVA_PSEPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230586|sp|A5VZU6|RUVA_PSEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24982663|gb|AAN66840.1|AE016312_11 Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440] gi|148510546|gb|ABQ77406.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas putida F1] gi|313497567|gb|ADR58933.1| RuvA [Pseudomonas putida BIRD-1] Length = 205 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK KA S + + V+ + S S +A+SALV+LGY +A+ Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEAS 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ ++ K+K ++IR +L+ + Sbjct: 178 KAIAAI--KDKAGLSSEELIRRSLKGM 202 >gi|254419140|ref|ZP_05032864.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3] gi|196185317|gb|EDX80293.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3] Length = 205 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E LID GV Y++ C RTL L GD T+ V + +D R Sbjct: 1 MIGRLRGVLAEVGEADCLIDCAGVGYVVSCGARTLGRLPAPGDEATVHVHSQWSEDAGPR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ +R+ F L ++QGVG + A+ VL + EL ++ ++ +A+ G+ K Sbjct: 61 LYGFLTRDERRAFTTLLAIQGVGPKAALAVLDVLPPGELAGAVAREDKAAVARANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELKGK + S V+ E A PS A+SAL+ LG + A Sbjct: 121 LALRIVTELKGKPLGDVSFAPT-APGVHVEIAP--PPPSLTGEAVSALLGLGVAEVNARR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV L + + A+ +IR AL+ + Sbjct: 178 AVDQALIRLGDEAELPAVIRAALQELG 204 >gi|16127467|ref|NP_422031.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15] gi|221236280|ref|YP_002518717.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus NA1000] gi|20455260|sp|Q9A3G7|RUVA_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766950|sp|B8H455|RUVA_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13424921|gb|AAK25199.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15] gi|220965453|gb|ACL96809.1| Holliday junction DNA helicase ruvA [Caulobacter crescentus NA1000] Length = 205 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 4/175 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E+ LIDV GV Y++ C RTL L +G+ L +E+ + +R Sbjct: 1 MIGRLRGAVAEVGEEEALIDVMGVGYLVRCGHRTLQRLPALGEETLLHIESQWSESAGLR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ DR+ F+LLQ++QGVG + AM VL ++ EL ++ ++ + + G+ K Sbjct: 61 LYGFLTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 +A RI+TELK K I+ V+ MS + P+ +A++AL+ LG + Sbjct: 121 LALRIVTELKDKPITDGPVL---MSAPTSSAPSAPAKPAPTGDAVAALMGLGVAE 172 >gi|73540190|ref|YP_294710.1| Holliday junction DNA helicase motor protein [Ralstonia eutropha JMP134] gi|90135661|sp|Q475R7|RUVA_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72117603|gb|AAZ59866.1| Holliday junction DNA helicase subunit RuvA [Ralstonia eutropha JMP134] Length = 193 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 109/209 (52%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G TL + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + G+GAR+A+ VLS ++ +EL ++I LQ + + ++PGI K Sbjct: 61 YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVSELAQAITLQEAGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177 A R+M ELKGK + E H A++ ++AL+ LGY + +A Sbjct: 121 AERLMLELKGK--------------LGAELGHAPGAAPVHDSAVDILNALLALGYSEKEA 166 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 TA+ V ++D I+LAL+A+S Sbjct: 167 ATAIKQV-PAGTGVSDG---IKLALKALS 191 >gi|167035195|ref|YP_001670426.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1] gi|189045762|sp|B0KTJ3|RUVA_PSEPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166861683|gb|ABZ00091.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1] Length = 205 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEAVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK KA S + + V+ + S S +A+SALV+LGY +A+ Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEAS 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ ++ K+K ++IR +L+ + Sbjct: 178 KAIAAI--KDKAGLSSEELIRRSLKGM 202 >gi|78485238|ref|YP_391163.1| Holliday junction DNA helicase RuvA [Thiomicrospira crunogena XCL-2] gi|123755243|sp|Q31H84|RUVA_THICR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78363524|gb|ABB41489.1| Holliday junction DNA helicase subunit RuvA [Thiomicrospira crunogena XCL-2] Length = 200 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +LI+V GV Y + P+ T +G++GD L H+R+D + L Sbjct: 1 MIGFLSGTLHAKLPPQILINVNGVGYEVEAPMSTFYAIGEVGDEVMLLTHMHVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+L+R F L V G+GA++A+G+LS ++ + V + + ++ + +IPG+ K Sbjct: 61 FGFASELERSLFKELIKVNGIGAKMAIGILSAMSVNDFVGLVDVGDAPALTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQA-- 177 A R++ E++ + + ++S + + S P + +A+ AL++LGY QA Sbjct: 121 AERLVIEMRDRLKGWGNGASSNVSS----KTMVSSAPHNQKASAVEALISLGYKTAQADK 176 Query: 178 -TTAVVSVLKKEKNIADDSQIIRL 200 AV S L E+ I Q ++L Sbjct: 177 MVQAVESGLSLEETIKKALQSVKL 200 >gi|126733600|ref|ZP_01749347.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp. CCS2] gi|126716466|gb|EBA13330.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp. CCS2] Length = 219 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 82/132 (62%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV YI+Y R ++ L G+ LF + +R+D ++L Sbjct: 1 MIGKIAGRLEYRSTDHVLIDVRGVGYIVYVSERVMAGLTSNGEAVALFTDLLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ +M +L + A + +I L + +A+ G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASMAILGTLGAEGVSRAIALGDWNAVAKAKGVGPKT 120 Query: 121 ASRIMTELKGKA 132 A R+ ELK KA Sbjct: 121 AQRVTIELKDKA 132 >gi|33598084|ref|NP_885727.1| Holliday junction DNA helicase motor protein [Bordetella parapertussis 12822] gi|44888435|sp|Q7W4T9|RUVA_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33566642|emb|CAE38852.1| holliday junction DNA helicase [Bordetella parapertussis] Length = 190 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 106/205 (51%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV GV Y I P+ TL L + G TLF +R+D L Sbjct: 1 MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ EL ++I LQ + + ++PGI K Sbjct: 61 YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK L + + Q+ I ++AL+ LGY ++ A Sbjct: 121 AERLLLEMRGK---LGADIGATPHAAGGHQSDI----------LNALLALGYSDKESQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LKK D S+ IRLAL+A+ Sbjct: 168 ----LKKLPEGVDVSEGIRLALKAL 188 >gi|310829219|ref|YP_003961576.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612] gi|308740953|gb|ADO38613.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612] Length = 203 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 105/193 (54%), Gaps = 4/193 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKGN E DY+++D QG+ Y I T+S L K+ +++ ++D + L Sbjct: 1 MFEYIKGNYEEQASDYIVVDHQGMGYRINVSANTMSELPKLHKEVKVYIHPAFKEDDVTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F + ++ G+G + AMG+LS+ T EL+ I+ +++K I++ PGI K Sbjct: 61 YGFSSKEEREIFRTIITISGIGPKAAMGLLSQFTRDELIRYIVNEDAKAISRAPGIGQKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K + + + + ++ + A++ L+ LGYG +A+ Sbjct: 121 ANRIILELKDKYKNFAFTDSAEPGAIE----NLRETDNLFNEAVNGLLGLGYGYAEASEL 176 Query: 181 VVSVLKKEKNIAD 193 V +++ +I D Sbjct: 177 VEKIIQPGMSIED 189 >gi|71734074|ref|YP_275913.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. phaseolicola 1448A] gi|90135568|sp|Q48FC4|RUVA_PSE14 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71554627|gb|AAZ33838.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323052|gb|EFW79141.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. glycinea str. B076] gi|320329676|gb|EFW85665.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. glycinea str. race 4] gi|330877979|gb|EGH12128.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. glycinea str. race 4] gi|330892240|gb|EGH24901.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. mori str. 301020] gi|330988969|gb|EGH87072.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 202 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|330991872|ref|ZP_08315821.1| Holliday junction ATP-dependent DNA helicase ruvA [Gluconacetobacter sp. SXCC-1] gi|329760893|gb|EGG77388.1| Holliday junction ATP-dependent DNA helicase ruvA [Gluconacetobacter sp. SXCC-1] Length = 207 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 10/211 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + D +IDV GV Y++ RTL+ L + + + VET +R+D I L Sbjct: 1 MIAQLRGLLAQVEADRCVIDVGGVGYLVQASSRTLAVLPQPPELALVLVETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R WF LL +VQGVGA+VA+ +LS + EL+ +I + ++ + G+ ++ Sbjct: 61 YGFAEASERAWFRLLTTVQGVGAKVALAILSVLPPPELMMAIGSGDKTMLTRAGGVGARL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-----NKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+TEL+ K + + + V + AH S A +A+ AL LG+ + Sbjct: 121 AQRIVTELRDKCEGMPTGMVATGGGVPGVTITRPTAH-----SVAADAVLALSGLGFRRG 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A V V+++ + D +IR AL+ ++ Sbjct: 176 EAQPVVERVIERHEGQVDLDIVIRDALKELA 206 >gi|298488209|ref|ZP_07006245.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157267|gb|EFH98351.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 202 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|46201286|ref|ZP_00055335.2| COG0632: Holliday junction resolvasome, DNA-binding subunit [Magnetospirillum magnetotacticum MS-1] Length = 173 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 95/164 (57%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 ++G TLF+ET +R+D I LFGFL +R WF LL +VQGVGA+V + +LS +L+ Sbjct: 2 EVGSAATLFIETQVREDAISLFGFLDTGERDWFRLLTTVQGVGAKVGLAILSVAAPDQLL 61 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159 + I Q+ + + G+ K+A RI+TELK KA ++ + A + + Sbjct: 62 QIIAAQDKAGLTRANGVGPKLAVRILTELKDKAGKIALGGFNPTAGAVASSAPLPAASGR 121 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 +A+SALVNLGY + +A AV ++ + AD S +IR +L+ Sbjct: 122 MEDAVSALVNLGYKRLEAFQAVGETARELGDDADSSALIRASLK 165 >gi|254441542|ref|ZP_05055035.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 307] gi|198251620|gb|EDY75935.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 307] Length = 231 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 24/229 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G +E D+VLIDV+GV YI++ R ++ L ++G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRLEYRATDHVLIDVKGVGYIVFVSDRVMATLPRVGEAVALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + SI + + +A G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWATVATAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS-----------------------CVNKEQAHICSMP 157 A +++ +LK KA S+ ++ V++ Sbjct: 121 AKKVILDLKDKAHSVMAMAGTAAGAASAAGGVASVSADAETDADADALVDRYDGPAAGNG 180 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+SAL NLGYG A AV E + AD + +IR AL+ ++ Sbjct: 181 AAQSEALSALSNLGYGPSDAAGAVAQA-AVENDGADTAVLIRAALKLLA 228 >gi|170723160|ref|YP_001750848.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619] gi|229560119|sp|B1JD71|RUVA_PSEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169761163|gb|ACA74479.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619] Length = 205 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + A ELV + Q++ + ++PG+ K Sbjct: 61 YGFHEKRERELFRELIRLNGVGPKLALALMSGLEADELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK KA S + + V+ + + +A+SALV+LGY +A+ Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPVPVSGASTAEADAVSALVSLGYKPQEAS 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV ++ K+K ++IR +L+ + Sbjct: 178 KAVSAI--KDKAGLSSEELIRRSLKGM 202 >gi|70732089|ref|YP_261845.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5] gi|90135592|sp|Q4K7D8|RUVA_PSEF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68346388|gb|AAY93994.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5] Length = 202 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYEVEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R +F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFASKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQAQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + +V N+ A + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEAVPSMFALVPNQPDAP-APVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K+K ++ + +IR AL+ + Sbjct: 180 VSAI--KDKGLSSED-MIRRALKGM 201 >gi|315498698|ref|YP_004087502.1| holliday junction DNA helicase ruva [Asticcacaulis excentricus CB 48] gi|315416710|gb|ADU13351.1| Holliday junction DNA helicase RuvA [Asticcacaulis excentricus CB 48] Length = 205 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 117/217 (53%), Gaps = 24/217 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + + +D +I+V G+ YI+ C +RTL+ L G L +E+ R+D RL Sbjct: 1 MIGRLRGILLEIEDDEAVIEVMGLGYIVKCGVRTLANLPANGQEAILHIESQTREDGTRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R+ F L +VQGVG + A+ VL +T EL ++ ++ + + G+ K+ Sbjct: 61 YGFLSKDERKTFQQLLTVQGVGPKAALSVLDILTPHELAIAVAHEDKTKVNKANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-----------NAISALVN 169 A RI+ ELKGKA+++ +A + P + +++AL+ Sbjct: 121 AQRIVIELKGKALAIG-------------EAFVPVAPGVVLASASSAASRSGESVAALMG 167 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 LG + Q+ AV + +K+ A+ + +IR +L+ I Sbjct: 168 LGIPEAQSRQAVEAAVKELGPEAELAAVIRASLKLIG 204 >gi|330502219|ref|YP_004379088.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01] gi|328916505|gb|AEB57336.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01] Length = 202 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 113/205 (55%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + ++L+DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 2 VIGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGEPVTLHAHLVVREDAHLL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 62 YGFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALVKVPGVGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S+ V + A S S +A+SAL++LGY +A+ A Sbjct: 122 AERLLVELKDRFKAWESIPSIAPLVVEPQLAQAVS--SAENDAVSALISLGYKPQEASRA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V KE ++ + +IR ALR + Sbjct: 180 VAAV--KEDGMSSED-LIRRALRGM 201 >gi|56697949|ref|YP_168319.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3] gi|81349137|sp|Q5LNT7|RUVA_SILPO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56679686|gb|AAV96352.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3] Length = 224 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 16/189 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+YC RTL+ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRSTDHVLIDVRGVGYIVYCSDRTLAALPGVGEVVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S +++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 FGFMSLAEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWASVKSAKGVGPKT 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCV-------------NKEQAHICSMPSFAINAI 164 A RI+ +LK KA +++ V Q M ++ A + A+ Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVAQAMEGAVEVVEVIEPAAPAPRKAAPPGGAGAATAGAL 180 Query: 165 SALVNLGYG 173 SAL NLGYG Sbjct: 181 SALSNLGYG 189 >gi|254474829|ref|ZP_05088215.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp. R11] gi|214029072|gb|EEB69907.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp. R11] Length = 229 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 84/132 (63%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV YI+YC RT++ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSERTMAALPGVGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKA 132 A RI+ +LK KA Sbjct: 121 AQRIVLDLKDKA 132 >gi|330959265|gb|EGH59525.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 202 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGFLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFALVSSGPNQLEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|332188826|ref|ZP_08390535.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17] gi|332011136|gb|EGI53232.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17] Length = 199 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 80/131 (61%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG ++ D+ +IDV GV Y++ RTLS +G +G+ L E + +D IRL Sbjct: 1 MIAHLKGRLDSTGIDHAVIDVGGVGYLVGASARTLSVIGSVGEAAMLHTEMLVSEDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R WF LL VQGVG+RVA+ +LS + +L+ +I + ++A+ G+ K+ Sbjct: 61 VGFASADERDWFRLLTGVQGVGSRVALAILSALEPADLMRAIASGDKAMVARANGVGPKL 120 Query: 121 ASRIMTELKGK 131 A RI+ ELK K Sbjct: 121 AQRIVMELKDK 131 >gi|94496110|ref|ZP_01302688.1| probable holliday junction DNA helicase protein [Sphingomonas sp. SKA58] gi|94424289|gb|EAT09312.1| probable holliday junction DNA helicase protein [Sphingomonas sp. SKA58] Length = 202 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 112/205 (54%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K++G ++ D+ +IDV GV Y++ RTL+ LG +G+ T+ E + +D IRL Sbjct: 1 MIAKLRGLLDSTGIDHAVIDVGGVGYLVGASSRTLAALGPVGEAVTIHTEMLVAEDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R W+ LL VQGVG+RVA+ +LS + EL ++ + ++ + G+ K+ Sbjct: 61 VGFARADERDWYRLLTHVQGVGSRVALAILSALEPAELHRAVATGDKAMVTRANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178 A RI+ ELK K + + V +MP + + +A+SAL NLG+ +A+ Sbjct: 121 AQRIVNELKDK---IGAAPAGGPIGVGGA----VAMPVGNMSTDALSALQNLGFKPAEAS 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 AV + + A ++RLALR Sbjct: 174 AAVAAAEGELGEGASLDALVRLALR 198 >gi|66044657|ref|YP_234498.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. syringae B728a] gi|75502953|sp|Q4ZWL2|RUVA_PSEU2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|63255364|gb|AAY36460.1| DNA recombination protein, RuvA [Pseudomonas syringae pv. syringae B728a] gi|330968891|gb|EGH68957.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 202 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEA-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|103485830|ref|YP_615391.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis RB2256] gi|123380148|sp|Q1GWB4|RUVA_SPHAL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|98975907|gb|ABF52058.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis RB2256] Length = 199 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ + +IDV GV Y++ RTL LG +G T+ E + +D +RL Sbjct: 1 MIAKLTGRLDSNGAGHAVIDVGGVGYLVEASARTLDALGAVGGEVTIHTEMLVGEDFLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL SVQGVGA+VA+ +LS + +L ++ +S +IA+ G+ K+ Sbjct: 61 LGFARAEERDWFRLLTSVQGVGAKVALAILSALEVADLQRALASGDSAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A RI ELK KA +L ++ + + +AI+AL LG+ Sbjct: 121 AQRITHELKDKAGALGG--------ISGSGPALSAAAGPVGDAIAALTGLGF 164 >gi|18310930|ref|NP_562864.1| Holliday junction DNA helicase motor protein [Clostridium perfringens str. 13] gi|168208649|ref|ZP_02634274.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str. ATCC 3626] gi|168214131|ref|ZP_02639756.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE str. F4969] gi|168215574|ref|ZP_02641199.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC 8239] gi|169343575|ref|ZP_02864574.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str. JGS1495] gi|20455244|sp|Q8XJ13|RUVA_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|18145612|dbj|BAB81654.1| holliday junction DNA helicase [Clostridium perfringens str. 13] gi|169298135|gb|EDS80225.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str. JGS1495] gi|170713198|gb|EDT25380.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str. ATCC 3626] gi|170714360|gb|EDT26542.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE str. F4969] gi|182381996|gb|EDT79475.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC 8239] Length = 201 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 106/185 (57%), Gaps = 8/185 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 I+G +G+ +DYV+I++ + Y I+ T+S + K+GD L++E +R+D I L+GF Sbjct: 5 IRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGLYGFT 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K A RI Sbjct: 65 TREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRI 124 Query: 125 MTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAV 181 + ELK K L+S Q + +N + SF IN +SAL+ LGY + +A A+ Sbjct: 125 ILELKDKLKPDELTSEEGQLIEGINDNSDY-----SFNINETLSALMALGYTEKEAQKAL 179 Query: 182 VSVLK 186 V K Sbjct: 180 EKVDK 184 >gi|163742241|ref|ZP_02149629.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis 2.10] gi|161384571|gb|EDQ08952.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis 2.10] Length = 229 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 83/132 (62%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV YI+YC RT++ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKA 132 A RI+ +LK KA Sbjct: 121 AQRIVLDLKDKA 132 >gi|163738342|ref|ZP_02145757.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis BS107] gi|161388263|gb|EDQ12617.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis BS107] Length = 229 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 83/132 (62%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV YI+YC RT++ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKA 132 A RI+ +LK KA Sbjct: 121 AQRIVLDLKDKA 132 >gi|39996178|ref|NP_952129.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA] gi|81702836|sp|Q74E87|RUVA_GEOSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|39982943|gb|AAR34402.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA] gi|298505192|gb|ADI83915.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens KN400] Length = 199 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D ++IDV GV Y + P T L + G +L + TH+++D I L Sbjct: 1 MIALLTGRLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPEEGKTVSLSIHTHVKEDSISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++F LL SV G+G ++A +LS I EL +I+ N ++ IPGI K Sbjct: 61 FGFRTLAEKEFFQLLISVSGIGPKMARDILSNIQPEELAAAIVQGNLVRLSSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K V + D++ +E + A + SALVNLGY + A Sbjct: 121 AERLVLELKEK------VRKMDVAPSAQEAPSSEAPAEVADDVASALVNLGYKE-----A 169 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAI 205 VV + E +I D+ ++R AL+ + Sbjct: 170 VVRKVLAEMSIEPDASTEAVLRQALKVL 197 >gi|254464647|ref|ZP_05078058.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I] gi|206685555|gb|EDZ46037.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I] Length = 229 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +D+VLIDV+GV YI+YC RT++ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRAQDHVLIDVRGVGYIVYCSDRTMAALPGTGEPVALYTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWATVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL---------- 167 A RI+ +LK KA +++ V M E A A AL Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVVDAMDGPGLELVEAADPAPAAKPARKALPKKPSGAAAA 180 Query: 168 --------VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG A AV + AD+ ++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATWPD-ADEPELIRAALRLLA 226 >gi|168204868|ref|ZP_02630873.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str. JGS1987] gi|170663669|gb|EDT16352.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str. JGS1987] Length = 201 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 8/185 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 I+G +G+ +DYV+I++ + Y I+ T+S + K+GD L++E +R+D I L+GF Sbjct: 5 IRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGLYGFT 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + + F LL S+ GVGA+ A+ +LS T L I++ + K I + PGI K A RI Sbjct: 65 TREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYGIMMGDEKHITRAPGIGKKTAQRI 124 Query: 125 MTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAV 181 + ELK K L+S Q + +N + SF IN +SAL+ LGY + +A A+ Sbjct: 125 ILELKDKLKPDELTSEEGQLIEGINDNSDY-----SFNINETLSALMALGYTEKEAQKAL 179 Query: 182 VSVLK 186 V K Sbjct: 180 EKVDK 184 >gi|58040113|ref|YP_192077.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H] gi|81351699|sp|Q5FQC5|RUVA_GLUOX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58002527|gb|AAW61421.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H] Length = 200 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + + ++DV GV Y++ RTL+ L + + +ET +R+D I+L Sbjct: 1 MIGQLTGLVGQIEGERCIVDVNGVGYVVSASTRTLAVLPQPPSVARVLIETIVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R WF LL +VQ VGA+VA+ +LS EL+ +I + + + G+ ++ Sbjct: 61 FGFATTDERDWFRLLTTVQSVGAKVALAILSANNPGELLLAINAGDKGSLTRAAGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++EL+ K V + I S PS +A+ AL LG+ + +A Sbjct: 121 ADRILSELRNK------VAKMPGGGGTVSAPGIVSGPSVENDALLALAGLGFRRAEAWPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + VL + +N D IRL+L+ ++ Sbjct: 175 LSKVLAENENATLD-LAIRLSLKDLA 199 >gi|254511523|ref|ZP_05123590.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium KLH11] gi|221535234|gb|EEE38222.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium KLH11] Length = 225 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 87/132 (65%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV Y++YC RT++ L +G+ +++ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRAADHVLIDVRGVGYLVYCSDRTMAALPGVGEAVSIYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++++W LL SVQGVGA+V++ +LS + + +I L + + G+ K Sbjct: 61 YGFLSLVEKEWHRLLCSVQGVGAKVSLAILSALGPDGVSRAIALGDWGAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKA 132 A RI+ +LK KA Sbjct: 121 AQRIVLDLKDKA 132 >gi|255658187|ref|ZP_05403596.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM 20544] gi|260849495|gb|EEX69502.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM 20544] Length = 199 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + LY DY L+DV GV Y ++ T + L ++ + +LF T +R+D I L Sbjct: 1 MIGYLHGRVIALYTDYCLLDVHGVGYRVFLANSTRAKL-RLKEEASLFTYTSVREDAIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+ L V G+G +VA+G+LS IT L +I + + V+ ++PGI K Sbjct: 60 YGFATEEEYELFLQLIGVSGIGPKVALGILSAITVESLCRAIQNKQASVLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K S ++ ++ N+ + ++ A++AL +LGY Q + Sbjct: 120 AERLILELKDKVAFADSGEEELLTIENEAEVGDDAVA----EAMAALQSLGYTQAE---- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V++K II+ +L+A+S Sbjct: 172 IAPVIRKTAKYKTTEAIIKESLKALS 197 >gi|294085860|ref|YP_003552620.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum marinum IMCC1322] gi|292665435|gb|ADE40536.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum marinum IMCC1322] Length = 207 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 118/211 (55%), Gaps = 12/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + + +IDVQGV Y++ RT L T+ E +R+D + L Sbjct: 1 MIAQLRGILSHTADTHAIIDVQGVGYLVNISSRTQGQLAAQDGAVTVLTEMIVREDSMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LL +VQGVGA+ AM +LS ++ +L +I+ + ++A+ G+ KI Sbjct: 61 YGFHDASERDAFRLLITVQGVGAKAAMAILSVLSPADLSSAIMAGDKAMVARADGVGPKI 120 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQD 175 A R++ EL G+ SL + ++S V + +P + +A+SAL+NLGYG+ Sbjct: 121 AQRVVNELAEKIGRFPSLGDGLTINISGVTGGE----DLPGASAMGDALSALINLGYGRS 176 Query: 176 QATTAVVSVLKKEKNIADD-SQIIRLALRAI 205 +A A++ V ++ ADD S +I ALR I Sbjct: 177 EAHAALLRV--QQAGDADDLSGLIAAALREI 205 >gi|296117349|ref|ZP_06835939.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii ATCC 23769] gi|295976115|gb|EFG82903.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii ATCC 23769] Length = 204 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + D +IDV GV Y++ RTLS L + + + +ET +R+D I L Sbjct: 1 MIAQLTGLVGQVEADRCVIDVGGVGYLVLASTRTLSALPQGPEVARVLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R WF LL +VQGVGA+VA+ +LS + A+EL+ +I + + + G+ ++ Sbjct: 61 YGFIDAAERSWFRLLTTVQGVGAKVALAILSTLPASELIAAIASGDKSGLTRAAGVGARL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ K + V + +A+ AL LG+ + +A Sbjct: 121 AQRIVTELRDKCDGMPG---GGAPGVVMAGVKVTGNGGVMSDALLALSGLGFRRAEAQPV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+ + D IIR +L+ ++ Sbjct: 178 VARVMDRLDGGGDLDVIIRESLKELA 203 >gi|117923791|ref|YP_864408.1| Holliday junction DNA helicase RuvA [Magnetococcus sp. MC-1] gi|166230563|sp|A0L4V9|RUVA_MAGSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117607547|gb|ABK43002.1| Holliday junction DNA helicase subunit RuvA [Magnetococcus sp. MC-1] Length = 204 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG++ + D+V++DV GV Y ++ + T + L +G+ C L+ TH+R+D L Sbjct: 1 MIAQLKGSLAAKHPDHVVMDVHGVGYRVFISLATYNELPTVGEACLLYTVTHVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ R+ F LL SV G+G ++A+ LS T L+ ++ ++ ++ IPG+ K Sbjct: 61 YGFHSESQRKVFNLLTSVNGIGTKLALAALSSHTPEALLTALSREDLTLLCTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K +L A+ + SAL+NLGY Q A Sbjct: 121 AQRMAMELKDKLGALPMAAPTTAIGAATMAANPAGLRE---EVASALLNLGYKPPQVDAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + I D S ++ AL+ ++ Sbjct: 178 LAKLFSAGE-ITDISVALKGALKLLA 202 >gi|146283144|ref|YP_001173297.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501] gi|166230587|sp|A4VNA4|RUVA_PSEU5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145571349|gb|ABP80455.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501] gi|327481497|gb|AEA84807.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri DSM 4166] Length = 201 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 119/205 (58%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHMILDVNGIGYEVEVPMTTLYRLPAVGEPVTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ V+ +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSVLVRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S+ ++ + E ++ S +A+SAL++LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWESM--PAIATLVVEPGSKTAVTSAENDAVSALISLGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +E+N++ + ++IR AL+ + Sbjct: 179 VSAI--QEENLSSE-EMIRRALKGM 200 >gi|34499678|ref|NP_903893.1| Holliday junction DNA helicase RuvA [Chromobacterium violaceum ATCC 12472] gi|44888390|sp|Q7NQB7|RUVA_CHRVO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34105529|gb|AAQ61883.1| holliday junction DNA helicase [Chromobacterium violaceum ATCC 12472] Length = 197 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 19/209 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + V++DV GV Y + P+ T L +G CTLF +R+D L Sbjct: 1 MIGRLSGKLIEKLPPQVVVDVNGVGYEVDVPMTTFYQLPALGQPCTLFTHLAVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +RQ F L V G+GA++A+ +LS +TA EL ++ ++ K ++ +PGI K Sbjct: 61 YGFASKEERQTFRQLIKVTGIGAKIALAILSGMTADELAIAVASEDIKRLSAVPGIGKKT 120 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL+GK A + V + + P + ++AL+ LGY + +A Sbjct: 121 AERLVLELRGKLATGGNLTVPGGLP--------FAATPDEKSDIVNALLALGYNEKEAAA 172 Query: 180 AVVSVLKKEKNIADD---SQIIRLALRAI 205 A K++ D S+ +RLAL+++ Sbjct: 173 AT-------KSLPADVTVSEGVRLALKSL 194 >gi|330811393|ref|YP_004355855.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379501|gb|AEA70851.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 202 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R +F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFVGKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQSQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + +V N+ A ++ S +A++AL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEAVPAMFALVPNQPDAPAPAV-SAESDAVTALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ KEK ++ + +IR AL+ + Sbjct: 180 ISAI--KEKGLSTED-MIRRALKGM 201 >gi|329848091|ref|ZP_08263119.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum C19] gi|328843154|gb|EGF92723.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum C19] Length = 201 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 111/203 (54%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + + ++ +++ GV YI+ C IRTL+ + K L +++ R+D RL Sbjct: 1 MIGRLRGPLLEVGDEDAVVEAGGVGYIVRCGIRTLAAMPKPDTEVILHIDSQTREDGTRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +RQ F L VQGVG + A+ VL ++ +L +++ + + + G+ K+ Sbjct: 61 YGFLNKDERQAFQALLGVQGVGPKAALAVLDVLSPGQLAQAVAQDDKASVGRANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGKA++ ++ + +A + +++AL+ LG + QA A Sbjct: 121 ALRIVVELKGKALTSATFEPIALKPAEPVKASVNG------ESVAALIGLGISETQARLA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + ++ A +IR AL+ Sbjct: 175 VEAAIQTLGADAALPAVIRTALK 197 >gi|190571380|ref|YP_001975738.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018779|ref|ZP_03334587.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|254767401|sp|B3CMH6|RUVA_WOLPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190357652|emb|CAQ55096.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995730|gb|EEB56370.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 190 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 118/207 (57%), Gaps = 19/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MIG ++G ++ + D+++++V V YI+Y +TLS IG L ++T+ R++ Sbjct: 1 MIGNLRGIVDEVCSDHIILNVNDVGYIVYLSAKTLSACS-IGSRVKLLIDTYANSRENVT 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF+S ++Q LL V GV + AM +LS++T +L +II ++ K+ ++ G+ + Sbjct: 60 QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIINED-KLALKVSGLGL 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L +N H S + +A+SAL+NLGY + +A Sbjct: 119 KLINRIITELNGKVSKLE---------INNNHFH-----SISEDALSALINLGYERTKAY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + + + N+ D IIR+AL+ I Sbjct: 165 DTIKKIEDESPNL-DTKDIIRMALKTI 190 >gi|288939916|ref|YP_003442156.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM 180] gi|288895288|gb|ADC61124.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM 180] Length = 211 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I + +L+DV GV Y + P+ T L +G+ TL +R+D L Sbjct: 1 MIGRLQGRILAKHPPQLLLDVNGVGYELEAPMSTFYGLPAVGETATLLTHLAVREDAWTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + DR F L V GVGAR+A+ +LS + A + + +++ + ++PGI K Sbjct: 61 YGFIRERDRALFRALIKVTGVGARMALAILSGMDAARFAQCVEQEDATALTRLPGIGKKT 120 Query: 121 ASRIMTELKGK--------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ E++ + +L S Q S A + + +A+SALV LGY Sbjct: 121 AERLIIEMRDRLGGVMIAPGAALPSAAGQPASGTTT--ADVVAEDQALADAVSALVALGY 178 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A +V K +IIR ALR+++ Sbjct: 179 KPPDANRMARAVDDGAKTA---EEIIRAALRSVN 209 >gi|302671008|ref|YP_003830968.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus B316] gi|302395481|gb|ADL34386.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus B316] Length = 207 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E L + +IDV G+ Y + T+ + IG+ L+ T++++D L Sbjct: 1 MIAYVNGILENLEDGNAVIDVNGIGYNVNISGSTMDRMPGIGEMVKLYTYTNVKEDAFTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS + F LL +V G+G + + +LS +T +L +I+ +SK +++ PGI K Sbjct: 61 FGFLSRDELNLFKLLITVNGIGPKGGLAILSVMTPDDLRFAILAGDSKSLSKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQA 177 A RI EL+ K + LS + + + A I SM S A++ALV LGY A Sbjct: 121 AERITLELRDK-LKLSE--DELLGGTSASAADIGSMDGDNSARDEAVAALVALGYNSSDA 177 Query: 178 TTAVVSVLKKEKNIADDSQI-IRLALR 203 AV VL K +D++I ++LAL+ Sbjct: 178 MKAVRKVLASSKEAGEDTEILLKLALK 204 >gi|319778457|ref|YP_004129370.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9] gi|317108481|gb|ADU91227.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9] Length = 191 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 110/205 (53%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG + + V ID+ G+ Y + + + L ++G TLF +R+D L Sbjct: 1 MISRLKGKLIYKFPPTVCIDIGGIAYDVDVSLTSFYELPEVGQEVTLFTHLAVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ +R F L V G+G + A+G+LS ++ L +I Q+S + ++PGI K Sbjct: 61 YGFISEDERATFRTLIKVNGIGFKSALGILSGMSPDALYNAIEEQDSSQLERVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELKGK +S++ + N I AL+NLGY + QA A Sbjct: 121 AARIILELKGKLPEISTLNNTTSNLKNHNDVLI------------ALLNLGYSEKQAKLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +S L K+ D S+ +R+ALR++ Sbjct: 169 -ISTLPKD---IDASEGVRIALRSM 189 >gi|301155728|emb|CBW15196.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus parainfluenzae T3T1] Length = 203 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 15/210 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + +L+DVQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDQFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSFAINAISALVNLGYGQ 174 A R++ ELKGK V Q D +K HI S S A AI+AL+ LGY Sbjct: 121 AERLLVELKGK---FKDVRQSDFFVESK---HIPSTSELRQAESSADEAIAALIALGYKP 174 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A V V K + + Q+IR AL+A Sbjct: 175 TDAEKMVKKVAKADLS---SEQLIREALKA 201 >gi|89094837|ref|ZP_01167770.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92] gi|89080892|gb|EAR60131.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92] Length = 210 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + ++IDVQGV Y + + T L ++G TLF +R+D L Sbjct: 1 MIGRLKGELIEKQPPQLVIDVQGVGYEVEASMNTFYRLPELGSTLTLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS I+ +E V + ++ + ++PG+ K Sbjct: 61 YGFYDKEERSLFRTLIKANGVGPKLAITILSGISTSEFVRCVNDGDTASLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---AISALVNLGYGQDQA 177 A R++ E+K K +L D + + S A N A SALV LGY QA Sbjct: 121 AERLIVEMKDKIKALGLETSGDFELSAADGPDMASFEPQADNRAEAESALVALGYKPVQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 T A+ V K + A ++IR ALR++ Sbjct: 181 TKAIEQVFKTLGSSASSEELIRHALRSM 208 >gi|182624414|ref|ZP_02952198.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str. JGS1721] gi|177910417|gb|EDT72794.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str. JGS1721] Length = 201 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 106/185 (57%), Gaps = 8/185 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 I+G +G+ +DYV+I++ + Y I+ T+S + K+G+ L++E +R+D I L+GF Sbjct: 5 IRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGLYGFT 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K A RI Sbjct: 65 TREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRI 124 Query: 125 MTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAV 181 + ELK K L+S Q + +N + SF IN +SAL+ LGY + +A A+ Sbjct: 125 ILELKDKLKPDELTSEEGQLIEGINDNSDY-----SFNINETLSALMALGYTEKEAQKAL 179 Query: 182 VSVLK 186 V K Sbjct: 180 EKVDK 184 >gi|166031914|ref|ZP_02234743.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC 27755] gi|166028367|gb|EDR47124.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC 27755] Length = 203 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + YED V++DV GV Y IY +++S L IG + ++++D ++L Sbjct: 1 MISYIRGELAAQYEDKVIVDVGGVGYGIYMSAQSMSKLPPIGSEVKIHTYLNVKEDSMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL V G+G + +LS ++ +L +++ + K I+ PGI K Sbjct: 61 FGFLTVDDLNVFKLLIGVSGIGPKGGQAILSVLSPDDLRFAVMADDVKAISSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K +S+ ++ ++ +A + + A+ ALV LGYG +A A Sbjct: 121 AQKLIVELKDK-LSIEDALEHAITEDGALKAQMSTGGEIQSEAVQALVALGYGNTEALKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K+ I D Q+ L RA+ Sbjct: 180 V-----KQVEITPDMQVEELLKRAL 199 >gi|225374901|ref|ZP_03752122.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM 16841] gi|225213284|gb|EEG95638.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM 16841] Length = 203 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 13/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E EDY++++ G+ Y I+ +T L +G+ ++ H+R+D + L Sbjct: 1 MYAYIKGTLEETGEDYIVVEAGGIGYQIFTTGQTFQYLPSMGEEVKVYTYLHVREDAMIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL V G+G + A+ +LS +T +L +++ ++K IA+ PG+ K Sbjct: 61 FGFLTKDDLFVFRLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A R++ ELK K +SL +Q ++ K + + A N AI ALV LGY +A Sbjct: 121 AQRLILELKDK-LSLEDAFEQKLA---KNDNPVQNKAKGAKNEAIEALVALGYSSSEALK 176 Query: 180 AVVSVLKKEKNIADDS---QIIRLALRAIS 206 A+ + I DD+ I++ AL+ ++ Sbjct: 177 ALNGI-----EITDDTDVEDILKAALKNMA 201 >gi|330975328|gb|EGH75394.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 202 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LG +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGNKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|15602842|ref|NP_245914.1| Holliday junction DNA helicase motor protein [Pasteurella multocida subsp. multocida str. Pm70] gi|13431841|sp|P57893|RUVA_PASMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|12721303|gb|AAK03061.1| RuvA [Pasteurella multocida subsp. multocida str. Pm70] Length = 204 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 18/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + +L+DVQGV Y + P+ + L IG LF +R+D L Sbjct: 1 MIGHLTGRLVEKHPPEILLDVQGVGYELLLPMTSFYQLPDIGQQTALFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVEEFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--------AISALVNLGY 172 A R++ ELKGK + Q+D E H+ P A+N AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGIQQEDFFI---ESQHL-KQPEHALNEQDIPASEAISALIALGY 173 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A A V K K Q+IR AL+A Sbjct: 174 ---KAAEAEKLVKKISKPALSSEQLIREALKA 202 >gi|146306303|ref|YP_001186768.1| Holliday junction DNA helicase motor protein [Pseudomonas mendocina ymp] gi|145574504|gb|ABP84036.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas mendocina ymp] Length = 202 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 116/206 (56%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + ++L+DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 2 VIGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGETLTLHTHQVVREDAHLL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 62 YGFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALTKVPGVGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + ++ ++ + E ++ S +A+SAL++LGY +A+ A Sbjct: 122 AERLLVELKDRFKAWETM--PAIATLVVEPRLGATVSSAENDAVSALISLGYKPQEASRA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V KE ++ + +IR ALR ++ Sbjct: 180 VAAV--KEDGLSSED-LIRRALRGMA 202 >gi|154504992|ref|ZP_02041730.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149] gi|153794875|gb|EDN77295.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149] Length = 375 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/189 (35%), Positives = 106/189 (56%), Gaps = 18/189 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI I+G + GL D ++DVQGV Y IY P ++LS LG IG C + + T++ R+D + Sbjct: 176 MISYIRGELAGLERDKAIVDVQGVGYGIYMPEQSLSLLGPIG--CEVKIHTYLNVREDAM 233 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +LFGFL+ D + F L+ V G+G + + +LS ++A EL +++ ++K I PGI Sbjct: 234 QLFGFLTRDDLEVFRLVIGVSGIGPKGGLNILSCLSADELKFAVLSGDAKAICAAPGIGK 293 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVNLGY 172 K A +++ ELK K + L +++ A +PS N A+ ALV LGY Sbjct: 294 KTAEKLIIELKDK-LDLKEMLE-------PRSAAAAEIPSDGRNGDIQTEAVQALVALGY 345 Query: 173 GQDQATTAV 181 G ++ AV Sbjct: 346 GNAESLKAV 354 >gi|313904087|ref|ZP_07837467.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6] gi|313471236|gb|EFR66558.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6] Length = 203 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 111/203 (54%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG IE + ED V++D G+ + ++ P +L+ + G+ L+ ++QD + L Sbjct: 1 MIGFIKGVIEEITEDSVVVDNNGIGWQVFVPGSSLAGNIRQGEEIKLYTYLSVKQDSLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ DR+ F+ L V G+G + A+G+LS ++A +L +++ ++ IA+ PGI K Sbjct: 61 FGFLNRDDREVFIRLLDVSGIGPKGALGILSVMSADDLRFAVLSDDAAAIAKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A + + ELK K L ++ ++ ++ + +A+ ALV LGY +A A Sbjct: 121 AQKAVLELKDK-FKLDDAFEKKLAHEQEKAGAAAAQAGAETDAVQALVALGYSGTEAMQA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V E D I++ AL+ Sbjct: 180 VRKVGAGED--MDSEAILKAALK 200 >gi|163855209|ref|YP_001629507.1| Holliday junction DNA helicase RuvA [Bordetella petrii DSM 12804] gi|229560006|sp|A9I8F2|RUVA_BORPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163258937|emb|CAP41236.1| holliday junction DNA helicase [Bordetella petrii] Length = 190 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +DV G+ Y I P+ TL L ++G TL +R+D L Sbjct: 1 MIGRITGTLIEKLPPTICVDVNGLGYDIEVPMSTLYALPELGARVTLHTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ ++L ++I LQ S + ++PGI K Sbjct: 61 YGFATAAERGAFRELIKVSGIGARTALSVLSGLSVSDLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + D+ AH ++P + ++AL+ LGY ++ A Sbjct: 121 AERLLLEMRGK-------LGADIGAT----AH--AVPDSQTDILNALLALGYSDKESQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LKK S+ IRLAL+A+ Sbjct: 168 ----LKKLPEGTGVSEGIRLALKAL 188 >gi|89895213|ref|YP_518700.1| hypothetical protein DSY2467 [Desulfitobacterium hafniense Y51] gi|122997255|sp|Q24UN6|RUVA_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89334661|dbj|BAE84256.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 201 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 117/213 (54%), Gaps = 20/213 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQI 58 MIG ++G + + D +++DVQGV Y + P LGK L + TH +R+D++ Sbjct: 1 MIGMLRGKVWEIQADKLILDVQGVGYQLSIPY---GLLGKAHPGHELILYTHVILREDEL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S +++ F+L+ SV G+G + A+ +LS + + +I +N ++ ++PGI Sbjct: 58 ALYGFSSAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGK 117 Query: 119 KIASRIMTEL----KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 K A R++ EL KG+AI+L + E A +F A+ L+ LG+ Q Sbjct: 118 KTAQRLILELKEKFKGRAIALEGI----------EGAGSLPQAAFHSEAMETLLALGFSQ 167 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 ++A A+ ++ + ++ + Q +RLALR+++ Sbjct: 168 EEAKKALQALPDSAQALSTEEQ-VRLALRSLAA 199 >gi|255526659|ref|ZP_05393564.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] gi|296187164|ref|ZP_06855561.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] gi|255509639|gb|EET85974.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] gi|296048199|gb|EFG87636.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] Length = 197 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 109/199 (54%), Gaps = 10/199 (5%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 I+G G+ +DY++++ G+ Y IY TL+ + KI + L+++ +R+D I L+GFL Sbjct: 5 IRGTYAGMNKDYIVVENNGIGYKIYTSGSTLAKIPKINEEIMLYLQQIVREDFIGLYGFL 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + F LL S+ GVGA+ A+ +LS + L +I+ + K+I + PGI K++ RI Sbjct: 65 TKEELSMFNLLLSINGVGAKAALSLLSISSVNNLKYAILSGDEKLITRAPGIGKKMSQRI 124 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + ELK K V +D+ + I + A+ ALV LGY + +A A+ ++ Sbjct: 125 ILELKDK------VKPEDVDISQGDTIEIDETAGNSSEALEALVALGYSEKEANKAINTI 178 Query: 185 LKKEKNIADDSQIIRLALR 203 KK+ IIR AL+ Sbjct: 179 DKKD----SVENIIRNALK 193 >gi|237746839|ref|ZP_04577319.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes HOxBLS] gi|229378190|gb|EEO28281.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes HOxBLS] Length = 193 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D QGV Y I P+ T L +G+ TLF +R+D L Sbjct: 1 MIGRIHGTLLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGENVTLFTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + G+GAR+A+ +LS ++ E+ +++ LQ++ + +IPGI K Sbjct: 61 YGFGSLDERTLFRQLVRITGIGARIALALLSGLSVAEMAQAVALQDATRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK S +S+ + N I +AL+ LGY + + TA Sbjct: 121 AERLLLELKGKFDS-ASLTAAPSAVSNDSMTDIQ----------NALLALGYSEKETLTA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + N++D I++AL+ +S Sbjct: 170 IKQI-PADCNVSDG---IKMALKTLS 191 >gi|74318231|ref|YP_315971.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC 25259] gi|90146182|sp|Q3SGT1|RUVA_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|74057726|gb|AAZ98166.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC 25259] Length = 191 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 21/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + VL+DV GVCY I P+ T L IG+ L +R+D L Sbjct: 1 MIGRITGTLAAKQPPQVLVDVNGVCYEIDVPMSTFYNLPGIGEKVALLTHLAIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+++R F L V G+GA+ A+ VLS ++ +L +I Q I ++PGI K Sbjct: 61 YGFGSEVERAAFRELLKVSGIGAKTALSVLSGLSVNDLSAAIAAQEIGRIVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A R++ ELKGK + + + S+PS + AL+ LGY ++ T Sbjct: 121 AERLLLELKGKPVFAGA---------------LASVPSAGASDDVRQALLALGY-NERET 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A V L + + IR ALRA+S Sbjct: 165 AATVRELPAGLAV---GEAIRQALRALS 189 >gi|110800505|ref|YP_696628.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC 13124] gi|123148615|sp|Q0TP12|RUVA_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110675152|gb|ABG84139.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC 13124] Length = 201 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 8/185 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 I+G +G+ +DYV+I++ + Y I+ T+S + K+G+ L++E +R+D I L+GF Sbjct: 5 IRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGLYGFT 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K A RI Sbjct: 65 TREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRI 124 Query: 125 MTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAV 181 + ELK K L+S + + +N + SF IN +SAL+ LGY + +A A+ Sbjct: 125 ILELKDKLKPDELTSEEGELIEGINDNSDY-----SFNINETLSALMALGYTEKEAQKAL 179 Query: 182 VSVLK 186 V K Sbjct: 180 EKVDK 184 >gi|91203074|emb|CAJ72713.1| strongly similar to DNA helicase RuvA [Candidatus Kuenenia stuttgartiensis] Length = 196 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 112/203 (55%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + ++++V GV Y+++ PI T + G+ T+ + +R+D I+L Sbjct: 1 MLDYIRGQVISKSPTKLVLEVAGVGYLLHIPISTFEKIPSRGE-VTIHTQLFLREDGIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R F LL SV GVG +A+ +LS TA ++ +I +++K + +I G+ K Sbjct: 60 FGFASDEERGLFQLLLSVNGVGPTMAIAILSGSTANDIKCAIAREDTKALMRIKGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + +M + +FA +AI AL++LGYG+ A A Sbjct: 120 AERIVLELKESVKGAKASIDIEMDGRQR---------AFADDAIMALISLGYGRPVAENA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V +KK ++ + ++R AL+ Sbjct: 171 VKEAVKKLNSVDNIEVLVREALK 193 >gi|167759024|ref|ZP_02431151.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704] gi|167663431|gb|EDS07561.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704] Length = 203 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 2/184 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG +E L ED V+IDV G+ Y ++ + + L IG + ++++D ++L Sbjct: 1 MISYLKGTLEALEEDKVVIDVGGIGYGVFMSGQAMGLLPSIGKEVKIHTYLNIKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F LL V G+G + +GVLS ++ EL +++ + K I Q PGI K Sbjct: 61 YGFLTKDDLEVFKLLIGVNGIGPKGGLGVLSALSPDELRFAVMSNDVKAICQAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ EL+ K + L ++ ++ N+ Q NA+ AL LGYG +A A Sbjct: 121 AEKLILELRDK-LRLEDALEH-LASENEVQGAAAYQGEVQSNAVQALAALGYGSTEALKA 178 Query: 181 VVSV 184 V V Sbjct: 179 VRQV 182 >gi|260912903|ref|ZP_05919388.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis ATCC 43325] gi|260632893|gb|EEX51059.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis ATCC 43325] Length = 204 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQGV Y + P+ + L +IG +LF +R+D L Sbjct: 1 MIGHLTGRLVEKQPPEILLDVQGVGYELLLPMTSFYNLPEIGQKTSLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E V +I + + +IPG+ K Sbjct: 61 FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSF-AIN--AISALVNLGYGQDQ 176 A R++ ELKGK V Q D +K + SM S A N A+SALV LGY + Sbjct: 121 AERLLVELKGK---FKDVTQGDFFIESKHLPDVKVSMQSSDAPNDEAVSALVALGYKPVE 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A V + K + Q+IR AL+A Sbjct: 178 AEKMVKRITKPD---LSSEQLIREALKA 202 >gi|85858586|ref|YP_460788.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB] gi|123725225|sp|Q2LRA9|RUVA_SYNAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85721677|gb|ABC76620.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB] Length = 204 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + V+ID G+ Y + P+ T L +G +LFV T +QD I L Sbjct: 1 MIAQIRGKLILKTVSMVIIDNHGIGYEVMIPLSTYYELPDVGSEVSLFVYTFFKQDSILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF ++ ++Q F L+ SV G+G R+A+ VLS I ++EL+ +I + + ++PG+ K+ Sbjct: 61 VGFCTENEKQLFKLMISVSGIGPRLAVNVLSGINSSELIHAIANNDLNRLLKVPGLGRKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +S ++ ++ +N ++ I +AISAL+NLGY A A Sbjct: 121 AQRVILELRDKVSGWTS--KEQITFINNKKDAI-DQSVMEEDAISALINLGYKSQAAKDA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V+ + I++ AL+ ++ Sbjct: 178 IDRVISEGGENKSLDVILKKALKVLA 203 >gi|167644751|ref|YP_001682414.1| Holliday junction DNA helicase RuvA [Caulobacter sp. K31] gi|189045745|sp|B0SUN8|RUVA_CAUSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167347181|gb|ABZ69916.1| DNA recombination protein RuvA domain I [Caulobacter sp. K31] Length = 204 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 1/140 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E+ LIDV GV Y++ C RTL L +G+ L +E+ + +R Sbjct: 1 MIGRLRGAVAEIGEEEALIDVMGVGYVVRCGSRTLQRLPALGEEALLHIESQWSESAGLR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + DR+ F+LLQ++QGVG + AM VL ++ EL ++ ++ + + G+ K Sbjct: 61 LYGFGTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRASGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVV 139 +A RI+TELK K I+ V+ Sbjct: 121 LALRIVTELKDKPITDGPVL 140 >gi|95931133|ref|ZP_01313858.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM 684] gi|95132823|gb|EAT14497.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM 684] Length = 199 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 116/206 (56%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I D V++DV GV Y + P+ + L + TL + TH+R+D ++L Sbjct: 1 MIARLCGTIVSKTIDQVIVDVNGVGYQVSVPLSSFYQLEE-NQTATLQIYTHVREDALQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++Q F+LL S+ G+G +VA+ +LS + L + ++ +++K +A +PGI K Sbjct: 60 FGFQSLDEKQMFILLLSISGIGPKVALNILSHMDCHALRDCLLQEDAKRLATLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L Q + H + +A+SAL+NLGY + QA +A Sbjct: 120 ADRLILELREKVRKLYPEQPQTTQAAPEGVLH----NNHHDDALSALINLGYKEKQA-SA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +S L +E + ++++ AL+ +S Sbjct: 175 ALSRLTRE--FSSMEEMLKAALQQLS 198 >gi|58698305|ref|ZP_00373222.1| Holliday junction DNA helicase RuvA, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630965|ref|YP_002727756.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi] gi|254767402|sp|C0R4X3|RUVA_WOLWR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58535178|gb|EAL59260.1| Holliday junction DNA helicase RuvA, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225592946|gb|ACN95965.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi] Length = 190 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 115/209 (55%), Gaps = 22/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MIG + G ++ + D+++++V V Y++Y +TLS IG L +ET+ R++ Sbjct: 1 MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLSACA-IGSRIKLLIETYANNRENTT 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF+S+ ++Q LL V GV + AM +LS++T +L + I+ KV ++ G+ + Sbjct: 60 QLYGFISEEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLA-IMNEDKVTLKMSGLGL 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L +N H + +A+SAL+NLGY + +A Sbjct: 119 KLINRIITELSGKVSKLE---------INNNNFHPINE-----DALSALINLGYEKMKAY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207 + KK + D IIR+AL+ +S Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELST 189 >gi|326795234|ref|YP_004313054.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas mediterranea MMB-1] gi|326545998|gb|ADZ91218.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas mediterranea MMB-1] Length = 199 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + +L+DV G+ Y +Y + T+ L IG+ L +++D L Sbjct: 1 MISRIVGTLIEKMPPELLVDVNGIGYEVYASMTTIYDLASIGETVVLHTHLQVKEDSHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F +L V G+G ++A+ +LS ++ +EL+E++ N + +IPG+ K Sbjct: 61 YGFHSKDERAVFRVLIKVNGIGPKMALAILSSMSTSELIENVQESNVDALVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L +QD+ K + + P A +ALV LGY +A+ A Sbjct: 121 AERLIIELRDK---LGQAAKQDLFSTPKVLKQVQADPRQ--EAEAALVALGYKPQEASKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V ++ +D II+ AL+ + Sbjct: 176 VAKV---PQDGSDSETIIKAALKGM 197 >gi|255263783|ref|ZP_05343125.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62] gi|255106118|gb|EET48792.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62] Length = 220 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 13/215 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D+VLIDV+GV Y++Y R ++ L G+ LF + +R+D ++L Sbjct: 1 MIGKIAGRIDYRAADHVLIDVRGVGYVVYVSDRVMASLPGNGEAVALFTDLLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ +M +L I A + +I L + IA G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASMAILGAIGAEGVSRAIALGDWAAIATAKGVGPKT 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHI-CSMPSFAIN--------AISALV 168 A R + +LK KA +++ + + V E I + P + A+SAL Sbjct: 121 AQRAVLDLKNKAHAVMAMGGTLAEAQGEVEAEGEVIETAAPKVTRSGNGAAQSEALSALG 180 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 NLGY A AV + AD S++IR AL+ Sbjct: 181 NLGYSPSDAAGAVAEASGGAPD-ADTSELIRAALK 214 >gi|77919931|ref|YP_357746.1| Holliday junction DNA helicase RuvA [Pelobacter carbinolicus DSM 2380] gi|90135490|sp|Q3A231|RUVA_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77546014|gb|ABA89576.1| Holliday junction DNA helicase subunit RuvA [Pelobacter carbinolicus DSM 2380] Length = 197 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 8/165 (4%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++DV GV Y + P+ T L GD L V TH+R+D + LFGFL++ ++ F LL Sbjct: 17 VILDVGGVGYRLLIPLSTYYALPDEGD-VRLRVHTHVREDALLLFGFLTETEKDLFGLLL 75 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 SV GVG +VA+ +LS + A +L +++ N+K +A +PGI K A R++ EL+ K + Sbjct: 76 SVSGVGPKVALNILSHLPAADLQQALSQGNAKHLATVPGIGKKTAERLVLELREKVGPVQ 135 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +V + + E A +A+SALVNLGY ++ + A+ Sbjct: 136 AVPGN--APLPAETAG-----DLREDALSALVNLGYKENLSRKAL 173 >gi|77460629|ref|YP_350136.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf0-1] gi|90135610|sp|Q3K7V9|RUVA_PSEPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77384632|gb|ABA76145.1| holliday junction helicase subunit B [Pseudomonas fluorescens Pf0-1] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 114/207 (55%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R +F L + GVG ++A+ ++S + EL+ + Q++ + ++PG+ K Sbjct: 61 YGFAGKRERDFFRELIRLNGVGPKLALALMSSLEVDELIRCVQSQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK KA S + + V + + + +A+SAL++LGY +A+ Sbjct: 121 AERLLVELKNRFKAWETSPAM---FALVPNQPDGPAPVNTAENDAVSALISLGYKPQEAS 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ ++ KEK ++ + +IR AL+ + Sbjct: 178 KAISAI--KEKGLSSED-MIRRALKGM 201 >gi|257068561|ref|YP_003154816.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium faecium DSM 4810] gi|256559379|gb|ACU85226.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium faecium DSM 4810] Length = 205 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D ++++V G+ Y++ + LS + G TL E +R+D + L Sbjct: 1 MIASLTGRVARIDLDSLVLEVGGIGYLVRTTPQALSAT-RHGAELTLHTELVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F ++QSV G+G R A+ VL+ + EL ++ Q++K I + PGI K+ Sbjct: 60 FGFPQLEEAETFRIVQSVSGIGPRTALAVLAVLEPEELRRAVAEQDAKTITRTPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179 A R++ EL GK + +S+ + A + PS A + + ALV LG+ + A Sbjct: 120 AGRMLLELGGKLPAPASL----SAVPGTPAAEAPATPSGADADVVEALVGLGWAEKAALK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV S + D ++++R ALR + Sbjct: 176 AVESARADDGAELDSAELLRRALRGL 201 >gi|56460194|ref|YP_155475.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina loihiensis L2TR] gi|81363131|sp|Q5QYU4|RUVA_IDILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56179204|gb|AAV81926.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina loihiensis L2TR] Length = 205 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + V++DVQG+ Y I P+ L +G+ L +R+D L Sbjct: 1 MIGHIQGVLTSKQPPEVVLDVQGIGYEIQLPMTCFYQLPPVGETIKLITHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL QGVG ++A+ +LS ++A E V ++ + + ++PG+ K Sbjct: 61 YGFISASERSLFRLLLKTQGVGPKLALAILSGMSADEFVMAVNQNDVTRLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQAT 178 A R++ E++ + S D + ++ + P+ A +AISAL +LGY ++QA Sbjct: 121 AERLVIEMRDRLKDWQPSTPFTDRAPLDSQGMDAREHPADARTDAISALQSLGYKENQAE 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V E N +IRLAL+ +S Sbjct: 181 KALQKVYSAEHN---SETLIRLALKQLS 205 >gi|162146622|ref|YP_001601081.1| Holliday junction DNA helicase RuvA [Gluconacetobacter diazotrophicus PAl 5] gi|209543386|ref|YP_002275615.1| Holliday junction DNA helicase RuvA [Gluconacetobacter diazotrophicus PAl 5] gi|189045754|sp|A9HAV7|RUVA_GLUDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161785197|emb|CAP54743.1| putative holliday junction ATP-dependent DNA helicase ruvA [Gluconacetobacter diazotrophicus PAl 5] gi|209531063|gb|ACI51000.1| Holliday junction DNA helicase RuvA [Gluconacetobacter diazotrophicus PAl 5] Length = 200 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 79/132 (59%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D ++DV GV Y+++ RTLS L + D + VET +R+D L Sbjct: 1 MIAHLTGLVGQMESDRCVVDVGGVGYLVHASTRTLSALPRPPDVTRVLVETVVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R WF LL +VQGVGA+VA+ +LS ++ +L I + + ++ G+ ++ Sbjct: 61 YGFAEAAERDWFRLLTTVQGVGAKVALAILSALSPGDLAGVIAAADKASLTRVSGVGARL 120 Query: 121 ASRIMTELKGKA 132 A RI+TEL+ KA Sbjct: 121 AERILTELRDKA 132 >gi|187479251|ref|YP_787276.1| Holliday junction DNA helicase RuvA [Bordetella avium 197N] gi|123765963|sp|Q2KVY6|RUVA_BORA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115423838|emb|CAJ50389.1| holliday junction DNA helicase [Bordetella avium 197N] Length = 190 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV G+ Y I P+ TL L G TLF +R+D L Sbjct: 1 MIGRITGTLIEKTPPVVYVDVNGIGYEIDVPMSTLYALPDTGARVTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ EL ++I LQ S + ++PGI K Sbjct: 61 YGFGTASERAAFRELVKVSGIGARTALAVLSGMSVAELAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK L + + V Q+ I ++AL+ LGY + + + A Sbjct: 121 AERLLLEMRGK---LGADIGATPHAVPDSQSDI----------LNALLALGYSEKE-SLA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L + ++D IR AL+A++ Sbjct: 167 ALKTLPEGLGVSDG---IRQALKALA 189 >gi|222055417|ref|YP_002537779.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32] gi|254766963|sp|B9LZC5|RUVA_GEOSF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221564706|gb|ACM20678.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32] Length = 199 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D++++DV GV Y + P T L + G +L + TH+++D I L Sbjct: 1 MIALLTGKLAHKSPDFIILDVNGVGYRVQIPFSTYYALPEGGSSVSLNIFTHVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL SV G+G ++ G+LS I A L +++I + +A IPGI K Sbjct: 61 YGFRTMEEKEMFQLLISVSGIGPKLGNGILSNIEAQNLSDALIRGDLARLATIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL+ K L +QQD++ + AH + +SALVNLGY + Sbjct: 121 AERLVLELREKVKKLGHGPLQQDVAPAD---AH----NDMRDDVVSALVNLGYKE----- 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AVV E +A D+ + L +A+ Sbjct: 169 AVVQKTVDEIGVAADATVESLLKQAL 194 >gi|261855148|ref|YP_003262431.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus c2] gi|261835617|gb|ACX95384.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus c2] Length = 206 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + ++L+DVQGV Y + P+ TL L G TL + T +R+D L Sbjct: 1 MIGRLKGILVNKQPPWILLDVQGVGYEVEVPLSTLFDLPANGQEATLLIHTVVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++R+ F L V GVGA++A+GVLS + A E +I + + ++PG+ K Sbjct: 61 YGFSREVERKLFRHLLKVTGVGAKLALGVLSGMNAEEFAGAIARNDIAALIRLPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + ++ ++ + + + A+SAL LGY ++ Sbjct: 121 AERLVIEMRDR-LAEGFFDGATLATAAGKMGDVVPLAGADQEAMSALEALGYKPAESQRM 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V E + QIIRLAL+ + Sbjct: 180 VKAVPGAETLPVE--QIIRLALKPFA 203 >gi|88800180|ref|ZP_01115748.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297] gi|88777026|gb|EAR08233.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297] Length = 201 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+DV G+ Y I CP+ T+ L G+ TL +R+D L Sbjct: 1 MIGRIQGTLLENKAPELLVDVHGLGYEIQCPLSTIFALPATGEIVTLHTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG ++A+ +LS + ++SI Q+ + +IPG+ K Sbjct: 61 YGFATQKERTLFRTLIKISGVGPKLALAILSGMETNRFIQSIQDQDPGALVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI--CSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K K L S Q + +A + S +A AL+ LGY QA+ Sbjct: 121 AERLIVEMKDKLAQLGS---QGAELITPMEALVEKNSRTDALQDAEGALIALGYKPTQAS 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V + D IIR AL+A+ Sbjct: 178 KAVSNVAADGMSSED---IIRAALKAM 201 >gi|224827243|ref|ZP_03700337.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002] gi|224600532|gb|EEG06721.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002] Length = 197 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DV GV Y + P+ T L +G+ TL+ +R+D L Sbjct: 1 MIGRLTGQLIEKLPPQIVVDVGGVGYEVDVPMSTFYLLPALGEKTTLYTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R+ F L V G+GA++A+ +LS ++A EL ++ ++ K ++ +PGI K Sbjct: 61 FGFASKGERETFRQLIKVGGIGAKIALAILSGLSADELALAVASEDLKRLSSVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + +V + P + ++AL+ LGY D+ A Sbjct: 121 AERLVLELRGKLATGGAVTTPG-------GLPFAATPDDKSDIVNALLALGY-NDKEAAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 L E ++D +RLAL+++ Sbjct: 173 ATKCLPPEVTVSDG---VRLALKSL 194 >gi|296132699|ref|YP_003639946.1| Holliday junction DNA helicase RuvA [Thermincola sp. JR] gi|296031277|gb|ADG82045.1| Holliday junction DNA helicase RuvA [Thermincola potens JR] Length = 200 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 14/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + EDY++IDV GV Y +Y P + L G T+F ++R+D ++L Sbjct: 2 MISFLRGELNYIGEDYIIIDVHGVGYKVYVPASFIGKLPACGQPVTVFTHLYVREDVMQL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L V G+G +VA+ VLS + A+ ++I+ + V+ Q+PGI K Sbjct: 62 YGFPDREELELFEVLLQVSGIGPKVAVSVLSAVPASSFKQAIVNEQVGVLTQVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---AISALVNLGYGQDQA 177 A R++ ELK K L Q N FA N A+ AL+ LGY ++A Sbjct: 122 AQRMILELKDKLGKLPGRGQAPPVSAN-----------FAPNTEEAVQALIALGYAPNEA 170 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 AV V+ + + I + L Sbjct: 171 RKAVNKVVNTHPELGVEESIKKALLE 196 >gi|254516709|ref|ZP_05128768.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3] gi|219675132|gb|EED31499.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3] Length = 203 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +L+DV GV Y I P+ TL L +GD TL +R+D L Sbjct: 1 MIGRISGTLLHKHPPEILVDVAGVGYEIQVPMTTLFQLPALGDAVTLLTHHAVREDAQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ DR+ F L V GVG ++A+ +LS + + ++ + + +PG+ K Sbjct: 61 YGFVSERDRELFRHLIKVSGVGPKLALTILSGMDSDSFARAVQADDLTALVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + LS + + ++ A +A ALV+LGY +A Sbjct: 121 AERLLIEMRDR---LSGWLDK-ITDTGGGMARPIPASDKLSDAEEALVSLGYKPAEAARL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V +I D ++IRLALR+ Sbjct: 177 VARV--DNDDITDSEELIRLALRS 198 >gi|83647602|ref|YP_436037.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396] gi|123739873|sp|Q2SCL2|RUVA_HAHCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83635645|gb|ABC31612.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396] Length = 204 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 113/212 (53%), Gaps = 19/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +VL+DV GV Y + P+ L L K+G+ C+LF +R+D L Sbjct: 1 MIGRLVGKLAENHPPFVLLDVNGVGYEVEVPLSALGYLPKLGESCSLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR+ F LL V GVG ++A+ +LS ++ E VE + N + ++PG+ K Sbjct: 61 YGFIRREDRELFRLLLKVNGVGPKMAVAILSHMSPNEFVECVRGDNLTRLTKMPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-------ALVNLGYG 173 A R++ E++ + +D ++E A + S A+ S AL+ LGY Sbjct: 121 AERLLIEMRDRI--------KDWGAGDRETA-TPELLSQAVGGHSHLEEAEAALLALGYK 171 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A+ A+ +V K+ ++IRLAL+ + Sbjct: 172 PQEASRAINAV---NKDGMGRDELIRLALKGM 200 >gi|325579043|ref|ZP_08148999.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus parainfluenzae ATCC 33392] gi|325159278|gb|EGC71412.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus parainfluenzae ATCC 33392] Length = 203 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 102/209 (48%), Gaps = 15/209 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DVQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLTGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSFAINAISALVNLGYGQ 174 A R++ ELKGK V Q D +K HI S S A A++ALV LGY Sbjct: 121 AERLLVELKGK---FKDVRQSDFFVESK---HIPSTSELRQAESSADEAVAALVALGYKP 174 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALR 203 A V V K + Q+IR AL+ Sbjct: 175 TDAEKMVKKVAKADLT---SEQLIREALK 200 >gi|319775819|ref|YP_004138307.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047] gi|317450410|emb|CBY86626.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047] Length = 204 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173 A R++ ELKGK V Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V+K E Q+IR AL+A Sbjct: 175 PAEAEKMVKRVVKPE---LTSEQVIREALKA 202 >gi|187778348|ref|ZP_02994821.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC 15579] gi|187771973|gb|EDU35775.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC 15579] Length = 197 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ ++ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K I + V D +NK + + AI+ALV LGY + +A Sbjct: 121 AQRIILELKDK-IEIDIVEDDDEEIINK-----ITDDKKVLEAIAALVTLGYSEKEA-NK 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V++ K+ ++ QII+ AL+ Sbjct: 174 VINQCDKDNSL---EQIIKEALK 193 >gi|296390675|ref|ZP_06880150.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAb1] Length = 201 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK---EQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK + + Q+M + E ++ S +A+SAL+ LG+ +A Sbjct: 121 AERLLVELKDRFKAW-----QNMPTIAPLVMEPRGSATVSSAEADAVSALIALGFKPQEA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + AV +V ++ + ++IR AL+ + Sbjct: 176 SRAVAAVPGEDLS---SEEMIRQALKGM 200 >gi|329123663|ref|ZP_08252223.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus aegyptius ATCC 11116] gi|327469862|gb|EGF15327.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus aegyptius ATCC 11116] Length = 204 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-------CSMPSFAINAISALVNLGYG 173 A R++ ELKGK V Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIRLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V+K E Q+IR AL+A Sbjct: 175 PAEAEKMVKRVVKPE---LTSEQVIREALKA 202 >gi|269797654|ref|YP_003311554.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008] gi|269094283|gb|ACZ24274.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008] Length = 202 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 113/202 (55%), Gaps = 7/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T +II + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + Q + A AI ALV+LGY + Sbjct: 120 AERLVLELKDKIAKMTHISAESPAAI---QPIGVTASGAAGEAIEALVSLGYSERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V S+ ++++ S++I+++L Sbjct: 177 VESLDDGKRDV---SELIKVSL 195 >gi|170759601|ref|YP_001788391.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str. Loch Maree] gi|229560024|sp|B1L0B3|RUVA_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169406590|gb|ACA55001.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str. Loch Maree] Length = 197 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 111/201 (55%), Gaps = 10/201 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I ++GFL Sbjct: 5 IKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGIYGFL 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + F LL ++ GVGA+ A+ +LS + L +I + + K I + PGI K A RI Sbjct: 65 TKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKTAQRI 124 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + ELK K I + + D +NK + + A++ALV LGY + +A + V+++ Sbjct: 125 ILELKDK-IEIDISEEDDEQIINK-----VTDDKKVLEAVAALVTLGYSEKEA-SKVINL 177 Query: 185 LKKEKNIADDSQIIRLALRAI 205 K ++ QII+ AL+ + Sbjct: 178 CDKNNSL---EQIIKEALKHL 195 >gi|148381022|ref|YP_001255563.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. ATCC 3502] gi|153931785|ref|YP_001385393.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. ATCC 19397] gi|153936604|ref|YP_001388800.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. Hall] gi|166230541|sp|A7FY20|RUVA_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230542|sp|A5I6F2|RUVA_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148290506|emb|CAL84634.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927829|gb|ABS33329.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. ATCC 19397] gi|152932518|gb|ABS38017.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. Hall] Length = 197 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ A+ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K I + + + D +NK + + A++ALV LGY + +A Sbjct: 121 AQRIILELKDK-IEIDILEEDDEQIINK-----VADDKKVLEAVAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + S +KN + + QII+ AL+ Sbjct: 175 INSC---DKNNSLE-QIIKEALK 193 >gi|168181761|ref|ZP_02616425.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf] gi|237796527|ref|YP_002864079.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str. 657] gi|259495636|sp|C3KTD3|RUVA_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|182675197|gb|EDT87158.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf] gi|229263209|gb|ACQ54242.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str. 657] Length = 197 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 111/203 (54%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ A+ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K I + + + D +NK + + A++AL+ LGY + +A Sbjct: 121 AQRIILELKDK-IEIDILEEDDEQTINK-----VTDDKKVLEAVAALITLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + S +KN + + QII+ AL+ Sbjct: 175 INSC---DKNNSLE-QIIKEALK 193 >gi|94971750|ref|YP_593798.1| Holliday junction DNA helicase RuvA [Candidatus Koribacter versatilis Ellin345] gi|94553800|gb|ABF43724.1| Holliday junction DNA helicase subunit RuvA [Candidatus Koribacter versatilis Ellin345] Length = 202 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 14/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +I ++G I + V++D GV Y + + T S LG G +L+V TH+R+D + L Sbjct: 10 VIAHLRGKILAKRPNQVIVDCGGVGYDVTISVPTFSELGADGTEASLYVHTHVREDALAL 69 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++Q F L +V G+G ++A+ VLS + A E+V +I + + +IPG+ K Sbjct: 70 YGFVHPQEKQLFERLLTVSGIGPKLAITVLS-MAANEVVGAIRGNDVTRLTKIPGVGKKT 128 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + + +E + ISALVNLGY + A A Sbjct: 129 AERMILELKDKLETFGATPEIPKASQAEE------------DVISALVNLGYQRAAAEQA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V LK + A D Q+ R AL +S Sbjct: 177 VTRALKTGSSSAFD-QLFRGALGMLS 201 >gi|238916873|ref|YP_002930390.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC 27750] gi|259495642|sp|C4Z030|RUVA_EUBE2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|238872233|gb|ACR71943.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC 27750] Length = 207 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + D ++++ G+ Y IY P L +G ++ ++++D+ L Sbjct: 1 MISYIKGELAEILPDVIVVEANGIGYNIYVPGSVPGELPSVGSEVKIYTYMNVKEDECSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F +L V G+G + A+G LS ITA +L +++ + I +PGI K Sbjct: 61 FGFLTRDDLSMFKMLICVNGIGPKAALGALSNITADDLRFAVLADDVAAIKALPGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK--EQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ ELK K + L V + +S K +++ ++ +A+ ALV+LGY A Sbjct: 121 AQKIIIELKDK-LKLDEVFESALSKNKKADNNSNVSNVMMIRNDAVEALVSLGYSSKDAL 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV V E D +++ AL+ + Sbjct: 180 VAVKEVEDIENK--DSETVLKEALKKL 204 >gi|113460415|ref|YP_718477.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 129PT] gi|170717663|ref|YP_001783495.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336] gi|123131938|sp|Q0I1M4|RUVA_HAES1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045755|sp|B0UVK3|RUVA_HAES2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|112822458|gb|ABI24547.1| Holliday junction DNA helicase subunit RuvA [Haemophilus somnus 129PT] gi|168825792|gb|ACA31163.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336] Length = 204 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DVQGV Y + P+ + L ++G TLF +R+D L Sbjct: 1 MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E V +I + + +IPG+ K Sbjct: 61 FGFSHKQDRSLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAI---NAISALVNLGYGQDQ 176 A R++ ELKGK + Q D + I CS ++ A+SAL+ LGY + Sbjct: 121 AERLLVELKGK---FKGLQQTDFFIKSSHLPGIKCSKLDQSLQLDEAVSALIALGYKPIE 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A V VLK + Q+IR AL+A Sbjct: 178 AEKMVKKVLKAD---LTSEQLIREALKA 202 >gi|332285258|ref|YP_004417169.1| Holliday junction DNA helicase motor protein [Pusillimonas sp. T7-7] gi|330429211|gb|AEC20545.1| Holliday junction DNA helicase motor protein [Pusillimonas sp. T7-7] Length = 192 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV GV Y I P+ TL L G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKTPPIVCVDVGGVGYEIDVPMSTLYDLPDNGATITLYTHLAVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R F L V G+GAR A+ VLS ++ EL +I Q + ++ ++PGI K Sbjct: 61 YGFLSSKERSAFRALIKVTGIGARTALAVLSGMSVDELANAITQQETGLLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK L + V + I ++AL++LGY + A Sbjct: 121 AERLLLELRGK---LGGDLAHGAGTVAAGRDDI----------LNALLSLGYSNSETQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK D ++ IRLAL++++ Sbjct: 168 ----LKNLPEGVDVAEGIRLALKSLA 189 >gi|125972705|ref|YP_001036615.1| Holliday junction DNA helicase subunit RuvA [Clostridium thermocellum ATCC 27405] gi|256004864|ref|ZP_05429838.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM 2360] gi|281416893|ref|ZP_06247913.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20] gi|166230544|sp|A3DBU3|RUVA_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|125712930|gb|ABN51422.1| Holliday junction DNA helicase subunit RuvA [Clostridium thermocellum ATCC 27405] gi|255991174|gb|EEU01282.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM 2360] gi|281408295|gb|EFB38553.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20] gi|316941059|gb|ADU75093.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM 1313] Length = 202 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 114/207 (55%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +E D+++++ GV Y I+ + T+S +G+IG ++ ++R+D I L Sbjct: 1 MFAYIRGRLEYKNNDFLIVESNGVGYRIFTSLSTISGIGEIGQEVKVYTYLYVREDVISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL SV GVG + A+ VLS I+ + ++I + K + + GI KI Sbjct: 61 YGFLTQEELNVFELLISVSGVGPKAAVSVLSAISPSRFSLAVITDDVKTLTKAQGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A RI+ ELK K I + + S +E + S + A+SAL+ LGY +A Sbjct: 121 AQRIILELKDK-IKKEQLTEYAQS---EEGGKVLDTDSSKMAEAVSALMVLGYSPAEANK 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV +V +++ +I II+ AL+ ++ Sbjct: 177 AVSAVYREDMDI---ETIIKNALKGLA 200 >gi|15596163|ref|NP_249657.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1] gi|107100423|ref|ZP_01364341.1| hypothetical protein PaerPA_01001448 [Pseudomonas aeruginosa PACS2] gi|116048891|ref|YP_792308.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa UCBPP-PA14] gi|152985106|ref|YP_001349891.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7] gi|218893063|ref|YP_002441932.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58] gi|254239314|ref|ZP_04932637.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719] gi|254245249|ref|ZP_04938571.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192] gi|313105853|ref|ZP_07792116.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016] gi|2498872|sp|Q51425|RUVA_PSEAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122257998|sp|Q02IC8|RUVA_PSEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230585|sp|A6VA06|RUVA_PSEA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725446|sp|B7UXW6|RUVA_PSEA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|9946873|gb|AAG04355.1|AE004530_8 Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1] gi|1183841|dbj|BAA11818.1| Holliday junction binding protein [Pseudomonas aeruginosa] gi|115584112|gb|ABJ10127.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa UCBPP-PA14] gi|126171245|gb|EAZ56756.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719] gi|126198627|gb|EAZ62690.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192] gi|150960264|gb|ABR82289.1| holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7] gi|218773291|emb|CAW29103.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58] gi|310878618|gb|EFQ37212.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016] Length = 201 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 113/205 (55%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + ++ ++ + E ++ S +A+SAL+ LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWENM--PTIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V ++ + ++IR AL+ + Sbjct: 179 VAAVPGEDLS---SEEMIRQALKGM 200 >gi|218288865|ref|ZP_03493116.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius LAA1] gi|218240954|gb|EED08131.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius LAA1] Length = 208 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 7/193 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L YV +DV+ V Y ++ RT + L +GD L+ H+R+D L Sbjct: 1 MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAAL-NLGDTAFLYTHHHVREDGWAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G ++A+ V+ E+V +I+ ++ + ++++PGI K+ Sbjct: 60 YGFETSEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDVESLSRLPGIGRKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASR++ EL+ K L+ + S Q S A +A+SALV LGY +A A Sbjct: 120 ASRLVVELREKLDDLAPSALRPPSSAPGSQG------STAEDAVSALVALGYRPREAEEA 173 Query: 181 VVSVLKKEKNIAD 193 V +V + +++ D Sbjct: 174 VSAVGRGRQSVED 186 >gi|145634688|ref|ZP_01790397.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittAA] gi|145638774|ref|ZP_01794383.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittII] gi|148827465|ref|YP_001292218.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittGG] gi|260582589|ref|ZP_05850379.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127] gi|166230557|sp|A5UGC9|RUVA_HAEIG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145268233|gb|EDK08228.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittAA] gi|145272369|gb|EDK12277.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittII] gi|148718707|gb|ABQ99834.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittGG] gi|260094400|gb|EEW78298.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127] gi|301169022|emb|CBW28619.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus influenzae 10810] gi|309750264|gb|ADO80248.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus influenzae R2866] Length = 204 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173 A R++ ELKGK V Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V K E Q+IR AL+A Sbjct: 175 PAEAEKMVKRVAKPE---LTSEQVIREALKA 202 >gi|328953690|ref|YP_004371024.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca acetoxidans DSM 11109] gi|328454014|gb|AEB09843.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca acetoxidans DSM 11109] Length = 198 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 114/209 (54%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DY++I V GV Y + P+ T L + L + T ++ D ++L Sbjct: 1 MIAYLEGELFQKRPDYLIIKVGGVGYQTFIPLSTFYQLPEPPASVALHIHTQVQTDSLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F + ++Q F+ L S+ VG R+A+ +LS I+ +L +++I + +A IPG+ K Sbjct: 61 YAFATLDEKQTFIKLLSIPRVGPRLALNILSGISPQDLAQTLIQGDIPRLAAIPGLGRKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A RIM ELKGK ++ D + V+ + S P A+ +A+SAL+NLGY + A Sbjct: 121 AERIMVELKGK-------LRPDATAVSA----LSSGPQGALWEDALSALINLGYSRTLAE 169 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207 + V EK + + +I+RL+L ++ Sbjct: 170 EVLRHVQLHEKPLTLE-EILRLSLSRLAS 197 >gi|227872463|ref|ZP_03990804.1| possible crossover junction endonuclease RuvA [Oribacterium sinus F0268] gi|227841694|gb|EEJ51983.1| possible crossover junction endonuclease RuvA [Oribacterium sinus F0268] Length = 199 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 8/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + + ED ++I+ G+ Y + P K G+ L +R+D L Sbjct: 1 MIRFIHGILREVKEDMLVIEAGGLGYGVRIPASVFDKAPKTGEEILLHTYFSVREDSQEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR +F+ L SV G+G + A+G+ S ++ EL+ +II +SK I + PG+ K Sbjct: 61 FGFWEERDRDFFIKLLSVSGIGPKTALGIFSCMSREELIHAIISNDSKKIQKAPGLGKKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V ++D++ +E + A+ ALV+LGY +A Sbjct: 121 AERLIVELRDK------VPKEDITFSGEEAVETTATSVAVEEAVEALVSLGYSVMEAKRW 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + S+ E+ A+ +++R++L+ Sbjct: 175 IRSIPAYEEKTAE--ELLRISLK 195 >gi|145631439|ref|ZP_01787209.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae R3021] gi|144982976|gb|EDJ90485.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae R3021] Length = 204 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173 A R++ ELKGK V Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V K E Q+IR AL+A Sbjct: 175 PAEAEKMVKRVAKPE---LTSEQVIREALKA 202 >gi|322807372|emb|CBZ04946.1| holliday junction DNA helicase RuvA [Clostridium botulinum H04402 065] Length = 197 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 111/203 (54%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ ++ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K I + + + D +NK + + A++ALV LGY + +A Sbjct: 121 AQRIILELKDK-IEIDVLEENDEQTINK-----VTDDKKVLEAVAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + S +KN + + QII+ AL+ Sbjct: 175 INSC---DKNNSLE-QIIKEALK 193 >gi|260887321|ref|ZP_05898584.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] gi|330838926|ref|YP_004413506.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] gi|260862957|gb|EEX77457.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] gi|329746690|gb|AEC00047.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] Length = 201 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L D+ +DV GV Y ++ T L +G+ TLF +R+D + L Sbjct: 1 MIGFLRGKVARLSLDFCFLDVAGVGYRVFISGATHGRL-HMGEEVTLFTHLAVREDAMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + + F +L SV G+G + A+G+LS IT L ++ + + ++ + PGI K Sbjct: 60 YGFFSEEEYELFQMLISVTGIGPKAALGILSNITPENLCLAVRNKKADILTKAPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + + V + + A +AL++LGY Q + T Sbjct: 120 AERIILELKDK---MKGFMTEHEAIVEEGLLEEPVEDTMLAEAGAALLSLGYTQAEFT-- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +L++ K+ D +IR AL+ + Sbjct: 175 --PILRRAKDCKDAEALIRFALKEFA 198 >gi|239628227|ref|ZP_04671258.1| holliday junction DNA helicase RuvA [Clostridiales bacterium 1_7_47_FAA] gi|239518373|gb|EEQ58239.1| holliday junction DNA helicase RuvA [Clostridiales bacterium 1_7_47FAA] Length = 209 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 7/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G+ ED ++++ V I P L ++G+ T++ +R+D + L Sbjct: 1 MISYVKGPLMGIDEDSIIVEAGNVGLAIRVPASLQPELPRLGEEVTIYTYFQVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL DR F L V G+G + A+G+LS + +L +I+ ++ K +A+ PGI K Sbjct: 61 YGFLHSQDRDMFRQLIGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120 Query: 121 ASRIMTELKGKAIS----LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ +LK K IS L S+ S V A + + A A+ ALV LGY + Sbjct: 121 AQRLILDLKDK-ISMDDVLGSMALSGDSGVGPAAASMAGLAEAAKEAVQALVALGYTNTE 179 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ AV V E ++D +++ +L+ +S Sbjct: 180 ASRAVKQVEVAEGMTSED--VLKASLKHLS 207 >gi|266625272|ref|ZP_06118207.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM 13479] gi|288862827|gb|EFC95125.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM 13479] Length = 202 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 4/184 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + ++ED V+I+ + I+ P+ L L IG L+ +R+D + L Sbjct: 1 MISYVKGPLVDIFEDTVVIEAGYIGLEIHVPLSVLDRLPGIGMETVLYTYFQVREDGMCL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D Q F L SV G+G + A+GVLS +T EL +II ++K I++ PGI +K Sbjct: 61 YGFLNRQDLQMFRQLISVSGIGPKGALGVLSAMTPDELRLAIITGDAKAISRAPGIGVKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K I ++ V+ + E+ S A A+ ALV LGY +A A Sbjct: 121 AQRVILDLKDK-IDMADVLPAQFAA---EEEPGISAGGVAKEAVEALVALGYSTAEANRA 176 Query: 181 VVSV 184 V V Sbjct: 177 VGKV 180 >gi|332527517|ref|ZP_08403569.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus JA2] gi|332111924|gb|EGJ11902.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus JA2] Length = 192 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ T L +G+ L E +R+D +L Sbjct: 1 MIGRLSGTLAEKTPPQLLVDVGGVGYEVDVPMSTFYHLPALGERVVLLTEFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R F LL + GVG R+A+ +LS ++ EL +++ Q+ + ++PGI K Sbjct: 61 FGFLTASERATFRLLVKISGVGPRMALALLSGLSVAELSQAVAAQDGARLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + D+ + + + AL+ LGY + +A A Sbjct: 121 AERVLLELKGK-------LAPDLGLPSAAGGAGDAHADI----VQALMALGYNEREAQAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 L K+ + S+ I++AL+A++ Sbjct: 170 -AKALPKDVGV---SEGIKVALKALN 191 >gi|58584509|ref|YP_198082.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497985|sp|Q5GT34|RUVA_WOLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58418825|gb|AAW70840.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 196 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 113/209 (54%), Gaps = 24/209 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLS-CLGKIGDFCTLFVET--HMRQDQ 57 MIG + G ++ +Y D+++++V V YIIY + L+ C IG L +ET + R++ Sbjct: 1 MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKALNVCY--IGSKIKLLIETCANNRENT 58 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 +L+GF++ ++ LL V GV + AM +LS++T +L + I+ K+ +I G+ Sbjct: 59 TQLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLA-IMNEDKIALKISGLG 117 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K+ +RI+TEL GK L + + +N++ A+SAL+NLGY + Sbjct: 118 PKLINRIITELSGKVSKLET-NNNNFYPINED-------------AVSALINLGYEK--- 160 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 T V +KK K D IIR AL+ +S Sbjct: 161 -TKVYDTIKKYKPNLDTKDIIRTALKELS 188 >gi|118581082|ref|YP_902332.1| Holliday junction DNA helicase RuvA [Pelobacter propionicus DSM 2379] gi|166230581|sp|A1ASF4|RUVA_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118503792|gb|ABL00275.1| Holliday junction DNA helicase subunit RuvA [Pelobacter propionicus DSM 2379] Length = 198 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 7/176 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D++++DV GV Y + P T L + G +L + T +R+D I+L Sbjct: 1 MIALLTGQIAQKSPDHIILDVNGVGYRVQIPFSTYYDLPEEGT-VSLHIHTSVREDAIQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L++ +F LL SV GVG R+A +LS I +L +++ + ++++ +PGI K Sbjct: 60 YGFRTSLEKSFFQLLLSVSGVGPRLARDILSNIQPAQLAQALGQGDIRMLSAVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ELK K L D+S V + + +SAL+NLGY + Q Sbjct: 120 AERLVLELKEKVGKL------DLSSVVVPEPRQMPEDDLLEDVVSALLNLGYKEPQ 169 >gi|312897339|ref|ZP_07756765.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis F0359] gi|310621557|gb|EFQ05091.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis F0359] Length = 199 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG +E ++ V IDV GV Y +Y P+ TL+ L +G+ L+ ++R+D I L Sbjct: 1 MIGYVKGTVECIFASSVFIDVHGVGYRVYAPVSTLAHL-NVGEESLLYTYMNVREDAIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + FMLL V GVG +VA G+LS ++ ++ ++ ++PGI K Sbjct: 60 YGFLTQDEYDLFMLLIGVNGVGPKVANGILSATGTDSFRAAVANKDIGLLTKMPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K + + V S E + I + +AL LGY + + Sbjct: 120 AERIVLELQDK---VGTPVSSGESEKTPEPSPIEGI---GAEVTAALAGLGYSEREIEPI 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + K+ ++ +++ LRA+ Sbjct: 174 IAREAKEHDSV---ESLLKACLRALGT 197 >gi|149927724|ref|ZP_01915976.1| Holliday junction DNA helicase motor protein [Limnobacter sp. MED105] gi|149823550|gb|EDM82780.1| Holliday junction DNA helicase motor protein [Limnobacter sp. MED105] Length = 196 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 16/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + ++L+DVQGV Y + P+ TL L +I CTL +R+D L Sbjct: 1 MIGRLKGTLLEKNAPWILLDVQGVGYELQVPMSTLFNLPEINGSCTLLTHLVVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L V G+G R A+ +LS I+ + + ++ Q + + +IPGI K Sbjct: 61 YGFQNIAEKNLFKTLIKVSGIGPRTALAILSSISTNDFLLAVQSQETARLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELKG+ ++L + + M Q+ I + AL LGY +A Sbjct: 121 AERLLLELKGQIVALGGTANIAEGMPLPIGNQSEI----------VQALCALGYSDKEAA 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A L + ++ D ++LALR +S Sbjct: 171 LACKG-LPEGTSVTDG---LKLALRNLS 194 >gi|303231814|ref|ZP_07318530.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-049-V-Sch6] gi|302513521|gb|EFL55547.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-049-V-Sch6] Length = 202 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 107/192 (55%), Gaps = 4/192 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ + + S + Q+ + + AI ALV+LGY Q Sbjct: 120 AERLVLELKDKLVKMTQISVETPSAI---QSIGVTHSGPSGEAIEALVSLGYAQKDVEAL 176 Query: 181 VVSVLKKEKNIA 192 V S+ K+++ Sbjct: 177 VESLNDGSKDVS 188 >gi|153938510|ref|YP_001392349.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str. Langeland] gi|168179565|ref|ZP_02614229.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC 2916] gi|170754638|ref|YP_001782706.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str. Okra] gi|226950500|ref|YP_002805591.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str. Kyoto] gi|166230543|sp|A7GHT9|RUVA_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560023|sp|B1IMF4|RUVA_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766953|sp|C1FKG2|RUVA_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152934406|gb|ABS39904.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str. Langeland] gi|169119850|gb|ACA43686.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str. Okra] gi|182669614|gb|EDT81590.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC 2916] gi|226841819|gb|ACO84485.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str. Kyoto] gi|295320341|gb|ADG00719.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str. 230613] Length = 197 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 111/203 (54%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ ++ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K I + + + D +NK + + A++ALV LGY + +A Sbjct: 121 AQRIILELKDK-IEIDILEEDDEQIINK-----VTDDKKVLEAVAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + S +KN + + QII+ AL+ Sbjct: 175 INSC---DKNNSLE-QIIKEALK 193 >gi|152979457|ref|YP_001345086.1| Holliday junction DNA helicase motor protein [Actinobacillus succinogenes 130Z] gi|171704337|sp|A6VQA4|RUVA_ACTSZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150841180|gb|ABR75151.1| Holliday junction DNA helicase RuvA [Actinobacillus succinogenes 130Z] Length = 204 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 18/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DVQG+ Y + P+ + L G CT+F +R+D L Sbjct: 1 MIGRLQGKLIEKQPPEILLDVQGIGYELLLPMTSFYNLPDTGQECTVFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFSTKTDRTLFRELIKTNGVGPKLALAILSAMSVHEFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--QAHICSMPSFAIN--AISALVNLGYGQDQ 176 A R++ ELKGK + Q D +K I S N A++ALV LGY + Sbjct: 121 AERLLVELKGK---FKGLRQPDFFVESKHITVPDIVSAEKETPNDEAVAALVALGYKPPE 177 Query: 177 ATTAVVSVLKKEKNIAD----DSQIIRLALRA 204 A V K +A+ Q+IR AL+A Sbjct: 178 AAKMV-------KKVANGDLTSEQLIREALKA 202 >gi|68248920|ref|YP_248032.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae 86-028NP] gi|81336669|sp|Q4QNM5|RUVA_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68057119|gb|AAX87372.1| holliday junction DNA helicase RuvA [Haemophilus influenzae 86-028NP] Length = 204 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173 A R++ ELKGK + Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGIKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V K E Q+IR AL+A Sbjct: 175 PAEAEKMVKRVAKPE---LTSEQVIREALKA 202 >gi|49082750|gb|AAT50775.1| PA0966 [synthetic construct] Length = 202 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 113/205 (55%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALTLMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + ++ ++ + E ++ S +A+SAL+ LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWENM--PTIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V ++ + ++IR AL+ + Sbjct: 179 VAAVPGEDLS---SEEMIRQALKGM 200 >gi|294054968|ref|YP_003548626.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis DSM 45221] gi|293614301|gb|ADE54456.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis DSM 45221] Length = 199 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 108/204 (52%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG ++ V++DV+GV Y ++ P+ T + +G+ C LF+ + R+D L Sbjct: 1 MIARLKGTVDESTPLLVVLDVKGVGYEVHIPVTTAEQIPAVGETCNLFIHSVYREDSATL 60 Query: 61 FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S DR +F LL + V G+G ++ + +LSR++ L +I + ++++ PGI K Sbjct: 61 YGFASREDRDFFRLLVEKVSGIGPKIGISILSRMSVNVLQAAIASSDVALLSKCPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K + + + +K A+ + +F +A+ +L LGY A Sbjct: 121 TAERLVIELKDKVYTQA----PSSNTSSKHNANPDTSSAFQ-DAVGSLTTLGYKNADADK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + ++ A +IR AL+ Sbjct: 176 LIRKAAQRIGTDASVEDLIREALK 199 >gi|134299518|ref|YP_001113014.1| Holliday junction DNA helicase RuvA [Desulfotomaculum reducens MI-1] gi|172044284|sp|A4J536|RUVA_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134052218|gb|ABO50189.1| Holliday junction DNA helicase subunit RuvA [Desulfotomaculum reducens MI-1] Length = 199 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +V+IDV G+ Y + P T L +G LF +R+D I+ Sbjct: 1 MIAYIKGLLAADGPGWVVIDVNGIGYHVSIPSTT--QLPALGHEVKLFTHMSVREDGIQF 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F+LL +V GVG +VA+ V+S + + L +I +++ + ++PG+ K Sbjct: 59 FGFAKEDEKECFLLLLNVAGVGPKVALAVVSHLPPSNLRSAIAIEDVNQLVKVPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++V + +Q+ I + A+ AL+ LGY Q +A A Sbjct: 119 AQRILLELKDKLKGMAAVEHSTL-----QQSVITT--GSGDEAVEALLALGYSQGEARDA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V K D S +I++AL+ ++ Sbjct: 172 VKKAQKSAPE-EDLSALIKIALKELA 196 >gi|210615646|ref|ZP_03290692.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787] gi|210150189|gb|EEA81198.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787] Length = 203 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 104/181 (57%), Gaps = 4/181 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + ED +++DV G+ Y I+ P +++ L IG+ + ++R+D ++L Sbjct: 1 MISYIRGELSAIEEDKIIVDVNGIGYGIFMPGQSMGMLPPIGEEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS+++ +L +++ ++K I+ PGI K Sbjct: 61 FGFLTRDDLKIFKLVIGVSGIGPKGGLSILSQLSPDDLRFAVLANDAKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A +++ ELK K +S+ +++++ V E A + + A+ AL LGYG ++ Sbjct: 121 AEKLIIELKDK-LSVEDILEKNSETV--EYAGVADTANEVQAEAVQALTALGYGSTESMK 177 Query: 180 A 180 A Sbjct: 178 A 178 >gi|58617428|ref|YP_196627.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Gardel] gi|75356743|sp|Q5FG40|RUVA_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58417040|emb|CAI28153.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Gardel] Length = 191 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 123/208 (59%), Gaps = 20/208 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58 MIG I GN+E + + Y++++V + YIIY + L +C K+GD L++ET++ +D I Sbjct: 1 MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQTC--KVGDNIKLYIETYVNRDNIT 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GFL+ ++ +F +L ++ G+ + A+ +LS+++ E + S ++ N K+ + GI Sbjct: 59 QLYGFLNRQEQDYFKMLVTINGINYKTALSILSKLSP-EQIFSAVVNNDKIAFKGNGIGE 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+A RI+TEL+ K + +++ S + + ++++AL++LGY + +A Sbjct: 118 KLAGRIITELQYKINKMP--IEETFSIIEND------------DSLAALISLGYEKLKAF 163 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 V+ +K + A ++IR AL+ +S Sbjct: 164 N-VIQEIKSKTPDASTQEVIRKALQKLS 190 >gi|257465001|ref|ZP_05629372.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202] gi|257450661|gb|EEV24704.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202] Length = 200 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 16/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEDTTIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRMLFRELIKTNGVGPKLALAILSAMSVSQFASAVENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQA 177 A R++ ELKGK LS Q D+ EQ H M S A A AL+ LGY A Sbjct: 121 AERLLVELKGKFKGLS---QTDLFI---EQPHETIMTSSAEPSDEARDALIALGYKPADA 174 Query: 178 TTAVVSVLKKEKNI--ADDSQIIRLALR 203 + V N+ A Q+IR AL+ Sbjct: 175 EKMIKKV-----NLVGATSEQLIREALK 197 >gi|309379780|emb|CBX21556.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATNEERQTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K AD + +RLAL+ Sbjct: 164 SEREAKAAVKGVPKG----ADVGEGVRLALK 190 >gi|251793066|ref|YP_003007792.1| Holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus NJ8700] gi|247534459|gb|ACS97705.1| holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus NJ8700] Length = 204 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQGV Y + P+ + L ++G +LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYNLPEVGKQTSLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPGI K Sbjct: 61 FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQD-MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ELKGK + + VQ D + VN E PS A++AL+ LGY Sbjct: 121 AERLLVELKGKFKEVKTHDFFVQGDHLPSVNAETVATIE-PSN--EAVAALIALGYKPLD 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A V V K E Q+IR AL+A Sbjct: 178 AEKMVKKVSKPE---LSSEQLIREALKA 202 >gi|302035797|ref|YP_003796119.1| holliday junction DNA helicase RuvA [Candidatus Nitrospira defluvii] gi|300603861|emb|CBK40193.1| Holliday junction DNA helicase RuvA [Candidatus Nitrospira defluvii] Length = 202 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 102/190 (53%), Gaps = 6/190 (3%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V +DV GV Y + P+ T L + TL + TH+R+D I+L+GFL+ +++ F+LL Sbjct: 17 VTLDVHGVGYEVLIPLSTYYSLPNQHESVTLSIHTHVREDAIQLYGFLTTAEKEAFLLLT 76 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 + G+G ++ + VLS ++ +L +I + + + + GI K A+RI ELK K L Sbjct: 77 GISGIGPKLGLSVLSTLSVRDLFSAIQAGDIEKLGTVSGIGKKSAARIALELKDKVARLY 136 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 +Q S + + AH P + +A+SALVNLGY Q A+ + K Sbjct: 137 PAGEQSTSG-SGQPAH----PLYD-DALSALVNLGYRQPDVKEALKRIEKSGAMAQGLEG 190 Query: 197 IIRLALRAIS 206 +IR AL+ ++ Sbjct: 191 VIREALKDLA 200 >gi|148825408|ref|YP_001290161.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittEE] gi|229846401|ref|ZP_04466509.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 7P49H1] gi|166230556|sp|A5UAH7|RUVA_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148715568|gb|ABQ97778.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittEE] gi|229810494|gb|EEP46212.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 7P49H1] Length = 204 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173 A R++ ELKGK V Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V K E Q+IR AL+A Sbjct: 175 PVEAEKMVKRVAKPE---LTSEQVIREALKA 202 >gi|297181902|gb|ADI18079.1| holliday junction resolvasome, DNA-binding subunit [uncultured Acidobacteriales bacterium HF0200_23L05] Length = 198 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 17/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++D+ GV Y + P+ T LG++G L + TH+R+D + L Sbjct: 1 MIATLHGVLTEKNPSRLVVDISGVGYEVSVPLSTFYALGELGAEVDLRIHTHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI--AQIPGISM 118 FGF + L+ F L ++ GVG R+A+ VLS + +L+ +I Q+S ++ IPG+ Sbjct: 61 FGFATQLEIDLFGRLIAISGVGPRLALAVLSGLEPPDLLRAI--QDSDIVRLQGIPGVGK 118 Query: 119 KIASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A RI ELK K S L+ +D EQ + +SAL+NLGY + Sbjct: 119 KTAERISLELKDKLPSNVLTEGETKDFKN-GTEQVR--------RDVMSALLNLGYHRPL 169 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A AV VL E + +++ +RLALR ++ Sbjct: 170 AERAVKEVLTGEVHTFEET--LRLALRELA 197 >gi|282850099|ref|ZP_06259481.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC 17745] gi|282580288|gb|EFB85689.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC 17745] Length = 202 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 113/202 (55%), Gaps = 7/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T +II + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + Q + A AI ALV+LGY + Sbjct: 120 AERLVLELKDKIAKMTHISSESSATI---QPIGVAANGVAGEAIEALVSLGYLERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V S+ ++++ S++I+++L Sbjct: 177 VESLDDGKRDV---SELIKVSL 195 >gi|114047572|ref|YP_738122.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7] gi|117920401|ref|YP_869593.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3] gi|123326531|sp|Q0HUZ0|RUVA_SHESR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200264|sp|A0KWL8|RUVA_SHESA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113889014|gb|ABI43065.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7] gi|117612733|gb|ABK48187.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3] Length = 205 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLIDV GV Y + P+ + L ++ T++ +R+D L Sbjct: 1 MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ D +I+ AL+++ Sbjct: 181 KAVSAAYKEG---MDSETLIKAALKSM 204 >gi|33152771|ref|NP_874124.1| Holliday junction DNA helicase motor protein [Haemophilus ducreyi 35000HP] gi|38372436|sp|Q7VKV4|RUVA_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33148995|gb|AAP96513.1| Holliday junction DNA helicase RuvA [Haemophilus ducreyi 35000HP] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQG+ Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLYGKIIEKQPPEMVIDVQGIGYEVLLPMTSFYHLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + ++ + + +IPG+ K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVVQFANAVENEELVKLTKIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS----ALVNLGYGQDQ 176 A R++ ELKGK + Q D E +H + ++ I+A AL+ LGY + Sbjct: 121 AERLLVELKGK---FKGIAQTDFFV---EHSHETMVATYEIDASEEARDALLALGY---K 171 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 T A + K K+ A Q+IR AL+A Sbjct: 172 LTDAEKMIKKVHKSGATSEQLIRDALKA 199 >gi|187925318|ref|YP_001896960.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans PsJN] gi|229560013|sp|B2SYK1|RUVA_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187716512|gb|ACD17736.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans PsJN] Length = 193 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++LID GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + D+ + S A + ++AL+ LGY + +A TA Sbjct: 121 AERLLLELKGK-------IGADLGAMAG----AASASDHASDILNALLALGYSEKEALTA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 V KN+ S+ I+LAL+A+S Sbjct: 170 V-------KNVPAGTGVSEGIKLALKALS 191 >gi|149923021|ref|ZP_01911439.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica SIR-1] gi|149816142|gb|EDM75652.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica SIR-1] Length = 206 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 105/191 (54%), Gaps = 6/191 (3%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++DV+GV Y ++ I+TL+ + GD L+V T++R+D I LFGF +R F +L Sbjct: 11 VILDVKGVGYELFVSIQTLAGVPAEGDEVELWVHTNVREDAITLFGFAEAEERLLFRMLT 70 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 SV VG R A+ VL A EL+E+I ++S + +IPGI K + +I+ L K ++L Sbjct: 71 SVPKVGPRNAVAVLGGFPAIELLETIAAKDSAKLVKIPGIGKKTSEQIVLTLGDKVVTLL 130 Query: 137 SVVQQDMSCVNKEQAHI--CSMPSFAINAISALVNLGY---GQDQATTAVVSVLKKEKNI 191 +++ QA + P F A L++LG+ ++A AV + L + N+ Sbjct: 131 ELLRAQRGGEPGTQAELLPAEAPDFGTEAREVLLSLGWKGRAVEKALVAVEAELAEGANV 190 Query: 192 ADDSQIIRLAL 202 D+ ++R+ L Sbjct: 191 QLDA-LVRMTL 200 >gi|301060127|ref|ZP_07200994.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2] gi|300445639|gb|EFK09537.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2] Length = 200 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 5/181 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++ V GV Y ++ P+ T L + L + TH+R+D + L Sbjct: 1 MISYLSGTLFEKSTQSIIVQVGGVGYEVFVPLSTFYTLPEKDGPVNLHIHTHVREDALIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L++ F++L SV G+G +++ +LS + A EL+ +I ++ + IPGI K Sbjct: 61 FGFSTKLEKSLFLMLVSVSGIGPKLSANILSGMGAEELLRAIAAGDAPRLQAIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK +A + S Q S V E +M + +SAL+NLGY A A Sbjct: 121 AERIALELKDRAAAFSEDAQMPPS-VTSETGTEKAME----DTLSALINLGYSAKMARAA 175 Query: 181 V 181 + Sbjct: 176 M 176 >gi|238019731|ref|ZP_04600157.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748] gi|237863772|gb|EEP65062.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748] Length = 202 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 113/202 (55%), Gaps = 7/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + Q + A AI ALV+LGY + Sbjct: 120 AERLVLELKDKLAKMTHISAESPAAI---QPIGVAASGAAGEAIEALVSLGYSERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V S+ ++++ S++I+++L Sbjct: 177 VESLDDGKRDV---SELIKVSL 195 >gi|168187973|ref|ZP_02622608.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str. Eklund] gi|169294186|gb|EDS76319.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str. Eklund] Length = 200 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 15/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG GL +DY++++ + Y IY T++ + I + +++E +R+D I + Sbjct: 1 MFEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R F LL ++ GVGA+ A+ +LS + L SI+ ++ K++ + PGI KI Sbjct: 61 YGFLREDERAMFNLLLTISGVGAKAALSLLSISNVSNLKVSIMQEDYKMLTRAPGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK-EQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI ELK K + + ++D+ V + I + + A ALV LG+ Q +A Sbjct: 121 AQRITLELKDK---IEKIYEEDVENVKDISETSIDAGRKYD-EATEALVALGFTQKEAEK 176 Query: 180 AVVSVLKKEKNIADD---SQIIRLALR 203 A+ KNI + QII+ +LR Sbjct: 177 AL-------KNIDINKTIEQIIKDSLR 196 >gi|119896893|ref|YP_932106.1| Holliday junction DNA helicase RuvA [Azoarcus sp. BH72] gi|166230515|sp|A1K314|RUVA_AZOSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119669306|emb|CAL93219.1| holliday junction DNA helicase [Azoarcus sp. BH72] Length = 199 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 17/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y + P+ T L G +L +R+D L Sbjct: 1 MIGRISGLLLEKNPPQILVDAHGVGYELEVPMSTFYGLPATGTQVSLHTHLAIREDGHFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R F L V G+GAR A+ VLS ++ ++L +++ LQ + + +IPGI K Sbjct: 61 YGFATDEERTAFRQLLKVSGIGARTALAVLSGLSVSDLAQAVALQEAGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL+ K +L V ++ V P + ++AL+ LGY + +A Sbjct: 121 AERLLLELRDKLGKALPQVAGARLAAV------AGGAPDAKSDILNALLALGYNEKEALG 174 Query: 180 AVVSVLKKEKNIADDSQI---IRLALRAIS 206 A+ K +A+D+ + IR AL+ +S Sbjct: 175 AM-------KGLAEDTGVSDGIRQALKLLS 197 >gi|325981222|ref|YP_004293624.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp. AL212] gi|325530741|gb|ADZ25462.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp. AL212] Length = 193 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 22/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + VL++VQGV Y I P+ T L IG TL+ +R+D L Sbjct: 1 MIGRLTGKLLEKHPPQVLLEVQGVGYEIDVPMSTFYDLPTIGVEITLYTHLVIREDMHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L + G+GAR A+ +LS ++ +L ++ +Q+S + ++PGI K Sbjct: 61 FGFATEPERQTFRQLIKISGIGARTALALLSGLSVADLHHAVSIQDSARLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K D++ ++ ++ + S +N AL++LGY +A+ A Sbjct: 121 AERLLLELRDKL---------DLALLSSDRVLSSTSESDILN---ALLSLGYSDREASWA 168 Query: 181 VVSVLKKEKNIADDSQI---IRLALRAIS 206 + K I+ ++ + IR AL+ +S Sbjct: 169 I-------KQISSNAMVSDGIRQALQLLS 190 >gi|226324735|ref|ZP_03800253.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758] gi|225207183|gb|EEG89537.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758] Length = 203 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L ED V++DV GV Y I+ + + L +G + ++++D ++L Sbjct: 1 MISYIRGELVALEEDKVIVDVGGVGYGIFMSGQAMGQLPPVGSKVKIHTYLNVKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ F LL V G+G + +G+L+++T EL +++ ++ K I+ PGI K Sbjct: 61 YGFLNRDALSVFKLLIGVSGIGPKGGLGILAQLTPDELRFAVMSKDIKAISTAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + V+ + N + +A+ AL LGYG +A A Sbjct: 121 AEKLIVELKDK-LKIEDVLDHQVEAANGADEDTVNAQGLQADAVQALTALGYGSTEALQA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V E +D +++ AL+ Sbjct: 180 VRKVEMDESTTVED--LLKGALK 200 >gi|192360858|ref|YP_001981526.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107] gi|229560014|sp|B3PB58|RUVA_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190687023|gb|ACE84701.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107] Length = 205 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + Y+L+DV GV Y + P+ T L +G L + ++ +L Sbjct: 1 MIGRLKGILIEKQPPYLLLDVNGVGYELQAPMTTFYRLPSLGHEVVLHTHLSITENLHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L V GVG ++A+ +LS + + ++ + N K + ++PGI K Sbjct: 61 FGFAEQRDRSLFRTLIKVNGVGPKLAVAILSGMESDDIARCVRDNNIKALTRVPGIGQKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + + Q DM + QA I S A SAL+ LGY A Sbjct: 121 AERLVIELRDR-LKNWDLPQGDMLAHGEIQA-IASDNDIYAEAESALIALGYKPVDAAKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V S K+K A ++IR+ALR+++ Sbjct: 179 VASA-AKQKPEARSEELIRIALRSLA 203 >gi|240949538|ref|ZP_04753878.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305] gi|240296111|gb|EER46772.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305] Length = 200 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEETTIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK LS Q D+ + + S + A AL+ LGY A Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMASSVEPSDEARDALIALGYKPADAEKM 177 Query: 181 VVSVLKKEKNI--ADDSQIIRLALR 203 + V N+ A Q+IR AL+ Sbjct: 178 IKKV-----NLVGATSEQLIREALK 197 >gi|219669644|ref|YP_002460079.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense DCB-2] gi|219539904|gb|ACL21643.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense DCB-2] Length = 198 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 114/209 (54%), Gaps = 20/209 (9%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQIRLFG 62 ++G + + D +++DVQGV Y + P LGK L + TH +R+D++ L+G Sbjct: 2 LRGKVWEIQADKLILDVQGVGYQLSIPY---GLLGKAHPGHELILYTHVILREDELALYG 58 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 F S +++ F+L+ SV G+G + A+ +LS + + +I +N ++ ++PGI K A Sbjct: 59 FSSAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKTAQ 118 Query: 123 RIMTEL----KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 R++ EL KG+AI+L + E A +F A+ L+ LG+ Q++A Sbjct: 119 RLILELKEKFKGRAIALEGI----------EGAGSLPQAAFHSEAMETLLALGFSQEEAK 168 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207 A+ ++ + ++ + Q +RLALR+++ Sbjct: 169 KALQALPDSAQALSTEEQ-VRLALRSLAA 196 >gi|297539687|ref|YP_003675456.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301] gi|297259034|gb|ADI30879.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301] Length = 192 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + VLID GV Y P+ T L IG+ + +R+D L Sbjct: 1 MIGRLNGILLEKTPPLVLIDCNGVGYECEVPMSTFYNLPAIGEKVVMLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R F L V G+GA+ A+ +LS ++ +LV+++ +Q++ ++ ++PG+ K Sbjct: 61 YGFGSDQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVAMQDTAMLTRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +S N Q S + + ++AL++LGY + +A A Sbjct: 121 AERLLLELKDK------FTVAGLSPSNSNQPK-----SASSDVLNALISLGYNEREALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +L + +A+ I+LAL+++S Sbjct: 170 -VKLLPADATVAEG---IKLALKSLS 191 >gi|113970239|ref|YP_734032.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4] gi|123029678|sp|Q0HIZ2|RUVA_SHESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113884923|gb|ABI38975.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4] Length = 205 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLIDV GV Y + P+ + L ++ T++ +R+D L Sbjct: 1 MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKKERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALLSLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ D +I+ AL+++ Sbjct: 181 KAVSAAYKEG---MDSETLIKAALKSM 204 >gi|190149554|ref|YP_001968079.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249558|ref|ZP_07335765.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251815|ref|ZP_07533717.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307262875|ref|ZP_07544499.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229470525|sp|B3H0C5|RUVA_ACTP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189914685|gb|ACE60937.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651632|gb|EFL81781.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860722|gb|EFM92733.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871780|gb|EFN03500.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 201 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A R++ ELKGK V Q D + + + + A A ALV LGY A Sbjct: 121 AERLLVELKGK---FKGVAQSDFFEEHSVETIVATHSHDPADEARDALVALGYKLADAEK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 178 MIKKV---NKAGATSEQLIREALKA 199 >gi|319896645|ref|YP_004134838.1| holliday junction DNA helicase ruva [Haemophilus influenzae F3031] gi|317432147|emb|CBY80498.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3031] Length = 204 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 103/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173 A R++ ELKGK + Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGIKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V K E Q+IR AL+A Sbjct: 175 PAEAEKMVKLVAKPE---LTSEQVIREALKA 202 >gi|147919262|ref|YP_687002.1| holliday junction resolvasome, DNA-binding subunit [uncultured methanogenic archaeon RC-I] gi|110622398|emb|CAJ37676.1| holliday junction resolvasome, DNA-binding subunit [uncultured methanogenic archaeon RC-I] Length = 201 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 12/184 (6%) Query: 1 MIGKIKGNIEGLYE--DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQ 57 MI I+G I+ E + V+I+ G+ Y ++ P L L + G+ C L++ T+ R+ D Sbjct: 1 MIAHIEGKIDAKSESEEVVVIEAGGIGYEVHVPTPVLDQLPQEGEDCKLYIHTNFREEDG 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + DR +F LL +V G+G +V +G++S T E+ E+I+ ++ K + ++ G+ Sbjct: 61 TTLYGFATIQDRDFFRLLLTVSGIGPKVGLGIMSGATVEEIAEAIVTEDLKTLTRMNGVG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A R++ ELK K L ++ V + A + +A+ ALV LGY + A Sbjct: 121 KKTAQRLVLELKDKVAKL-RIMHHAKKQVKGDTA--------SADAVDALVALGYSRQVA 171 Query: 178 TTAV 181 + AV Sbjct: 172 SDAV 175 >gi|317402225|gb|EFV82814.1| Holliday junction DNA helicase [Achromobacter xylosoxidans C54] Length = 190 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV G+ Y I P+ TL L + G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKLPPTVCVDVNGLGYDIDVPMSTLYSLPETGARVTLYTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ +L ++I LQ S + ++PGI K Sbjct: 61 YGFATAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK L + + V+ Q+ I ++AL+ LGY + ++ +A Sbjct: 121 AERLLLEMRGK---LGADIGATAHAVHDNQSDI----------LNALLALGYSEKESLSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L + ++D I+ AL+A+ Sbjct: 168 -LKTLPEGVGVSDG---IKQALKAL 188 >gi|148263482|ref|YP_001230188.1| Holliday junction DNA helicase RuvA [Geobacter uraniireducens Rf4] gi|146396982|gb|ABQ25615.1| Holliday junction DNA helicase subunit RuvA [Geobacter uraniireducens Rf4] Length = 199 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 8/175 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D++++D+ GV Y + P T L G TL + TH+++D I L Sbjct: 1 MIALLAGKLAHKSPDFIILDIGGVGYRVQIPFSTYYALPDAGGVVTLNIYTHVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL SV GVG ++ G+LS I A L +++I + ++ IPGI K Sbjct: 61 YGFRTMAEKEMFQLLISVSGVGPKLGNGILSNIEAENLSDALIRGDLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ EL+ K + +++D Q + ISALVNLGY + Sbjct: 121 AERLVLELREKVKKMGPFSIREDAPPSPGRQ-------DIRDDVISALVNLGYKE 168 >gi|303230216|ref|ZP_07316984.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-134-V-Col7a] gi|302515142|gb|EFL57116.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-134-V-Col7a] Length = 202 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 107/192 (55%), Gaps = 4/192 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ + + + + + S PS AI ALV+LGY Q Sbjct: 120 AERLVLELKDKLVKMTQISVETPAAI-QPIGVTHSGPSG--EAIEALVSLGYAQKDVEAL 176 Query: 181 VVSVLKKEKNIA 192 V S+ K+++ Sbjct: 177 VESLNDGSKDVS 188 >gi|332826883|gb|EGJ99683.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas gadei ATCC BAA-286] Length = 193 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 106/204 (51%), Gaps = 14/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L V ++ GV Y I + T S L GK LF+ +R+D + Sbjct: 1 MIDYIKGEITELTPASVTLETYGVGYFISISLNTYSNLTGK--KSAQLFIYEAIREDAHQ 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF +R+ FMLL SV G+GA +LS + EL I NS ++ + GI +K Sbjct: 59 LFGFFDKQERELFMLLISVSGIGASTGRMILSSMNTQELANVIASGNSDMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ +LK K I +S + Q DM PS A++ALV LG+ Q QA+ Sbjct: 119 TAQRVIVDLKDK-IKVSGIEQVDMFA--------SGHPS-GEEAVAALVMLGFTQ-QASQ 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 VV+ + K+K + QII+ AL+ Sbjct: 168 KVVAKILKDKADSTVEQIIKTALK 191 >gi|260587811|ref|ZP_05853724.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583] gi|331083813|ref|ZP_08332922.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 6_1_63FAA] gi|260542076|gb|EEX22645.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583] gi|330403238|gb|EGG82798.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 6_1_63FAA] Length = 203 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 1/181 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I + ED V+++ + Y ++ P+ + + + GD ++ ++R+D ++L Sbjct: 1 MIAYLKGEIVEILEDRVILEAGNIGYNLFMPMAGVDGVLRTGDETKIYTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F LL V G+G + A+GVLS ++A EL +++ + K I++ PGI K Sbjct: 61 YGFLTKDDLNVFKLLLGVNGIGPKAALGVLSGLSADELRFAVLADDVKTISKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K +SL V + + + A+ AL LGY A A Sbjct: 121 AQKLILELKDK-MSLQEAFDLKSEHVQESAGSLSDVSDIKKEAVEALTALGYSGADALRA 179 Query: 181 V 181 V Sbjct: 180 V 180 >gi|333029161|ref|ZP_08457222.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides coprosuis DSM 18011] gi|332739758|gb|EGJ70240.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides coprosuis DSM 18011] Length = 199 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 113/204 (55%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI +KG + L ++D GV Y + + T S L GK C L+++ +R+D + Sbjct: 1 MIEYVKGELAELTPAQAVVDCNGVGYGVSISLNTYSALQGK--KECKLYIQEVIREDAHQ 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF++ +R+ F+LL SV G+G A +LS ++ ELVE+I +N+K++ + GI K Sbjct: 59 LFGFINKEERELFLLLNSVSGIGGNTARMILSALSPVELVEAIGTENTKLLQSVKGIGKK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LK K I +++V+ V ++ + M + +ISAL LG+ Sbjct: 119 TAERIIVDLKDK-IKSTAIVENGHVTVG--ESTLSDMDIYN-ESISALTMLGFAPAPTRK 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V ++ K+ N + ++++LAL+ Sbjct: 175 VVHAIFKENPNHTIE-EVVKLALK 197 >gi|83950117|ref|ZP_00958850.1| Holliday junction DNA helicase motor protein [Roseovarius nubinhibens ISM] gi|83838016|gb|EAP77312.1| Holliday junction DNA helicase motor protein [Roseovarius nubinhibens ISM] Length = 216 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 74/119 (62%) Query: 14 EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 ED+VL+DV+GV Y++YC RTL L +G+ L+ + +R+D ++LFGF S ++++W Sbjct: 6 EDHVLLDVRGVGYLVYCSDRTLQALPPVGEHTALYTDLLVREDLLQLFGFTSLVEKEWHR 65 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 LL VQG+GA+ ++ +L + + +I L + + G+ K A R++ ELK KA Sbjct: 66 LLMGVQGIGAKASLAILGTLGVEGVSRAINLGDWNALKAAKGVGPKTAQRVVNELKDKA 124 >gi|291538854|emb|CBL11965.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis XB6B4] Length = 203 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + E+ ++++ G+ Y IY +T L +G+ ++ H+R+D + L Sbjct: 1 MYSYIKGILTDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + + + LL V G+G + A+ +LS +T +L +++ ++K IA+ PG+ K Sbjct: 61 FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K +SL +Q + + H + A+ ALV LGY +A Sbjct: 121 AQRLILELKDK-LSLEDAFEQKFEKTGESTENHASGTKN---EAVQALVALGYSSSEALR 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + E+ D +I+++AL+ ++ Sbjct: 177 ALNGIEITEET--DVEEILKMALKKMA 201 >gi|82703833|ref|YP_413399.1| Holliday junction DNA helicase RuvA [Nitrosospira multiformis ATCC 25196] gi|123740585|sp|Q2Y5G4|RUVA_NITMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|82411898|gb|ABB76007.1| Holliday junction DNA helicase subunit RuvA [Nitrosospira multiformis ATCC 25196] Length = 197 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 14/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + VL+DVQGV Y I P+ T L +G TL +R+D L Sbjct: 1 MIGRISGLLLEKFPPLVLVDVQGVGYEIDVPMSTFYNLPAVGTQITLHTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L + GVGAR A+ +LS ++ +L +++ Q+ + +IPGI K Sbjct: 61 FGFATEGERQAFRQLVKISGVGARTALALLSGLSVADLHQTVSNQDPARLIRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A R++ EL+ K D+ A PS + ++AL++LGY +A Sbjct: 121 AERLLLELRDKL---------DLGVSAIPGAAGARRPSTMGSDVLNALLSLGYNDREANW 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A VS L + +++D IR AL+ +S Sbjct: 172 A-VSQLSVDLSVSDG---IRQALKFLS 194 >gi|319943009|ref|ZP_08017292.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia mirabilis ATCC 51599] gi|319743551|gb|EFV95955.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia mirabilis ATCC 51599] Length = 195 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y I P+ TL L G TL+ +R+D L Sbjct: 1 MIGRIHGTLVLANPPEILVDAHGVGYEISVPMSTLYELPPPGQTVTLWTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F + V G+G R+A+ VLS ++ +L ++ Q + + ++PG+ K Sbjct: 61 YGFLTESERTAFRAMIRVSGIGPRMALAVLSGLSVDDLSRAVAEQETGRLTRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK SS +Q +N +QA S + + AL+ LGY + ++ A Sbjct: 121 AERLLLELKGKLALASSGIQ-----IN-DQALFSS----GDDILRALLALGYSEKESNAA 170 Query: 181 VVSVLKKEKNIADD-SQIIRLALRA 204 + L + N+ D Q ++L +RA Sbjct: 171 IAK-LPEGVNVNDGIRQALKLLVRA 194 >gi|307245098|ref|ZP_07527191.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254053|ref|ZP_07535900.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258509|ref|ZP_07540246.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853987|gb|EFM86199.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862978|gb|EFM94925.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867413|gb|EFM99264.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 201 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A R++ ELKGK V Q D + + + + A A ALV LGY A Sbjct: 121 AERLLVELKGK---FKGVAQSDFFEEHSVETIVATHSHDPADEARDALVALGYKLADAEK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 178 MIKKV---NKAGATSEQLIREALKA 199 >gi|317496792|ref|ZP_07955122.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 5_1_63FAA] gi|316895804|gb|EFV17956.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 5_1_63FAA] Length = 201 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG +E + V++D G+ Y + P+R S KIG ++ H+R+D + L Sbjct: 1 MISYIKGILEDMSPGMVVVDNHGIGYQMMVPMRGES-FPKIGQEIKIYTHMHVREDDVSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS +++ F LL V G+G +V + VLS ++ EL ++I ++ K I++ PG+ K Sbjct: 60 FGFLSKEEKEAFELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A +++ ELK K S + + V E + S ++ I LV+LGY + +A Sbjct: 120 AKKLILELKDKL----SFEELEEDGVGAEIFDTSADSSDSVMITIEGLVSLGYSKSEAAI 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V + K++ + ++++ AL+ I Sbjct: 176 AVNKV-EDAKDLTPE-ELLKKALKNI 199 >gi|156741100|ref|YP_001431229.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM 13941] gi|189045765|sp|A7NIB1|RUVA_ROSCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|156232428|gb|ABU57211.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM 13941] Length = 197 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 19/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ G+ ++IY P + L+ G IG LF +R+D + L Sbjct: 1 MIASVRGTLIAVAADHVVIETGGIGWMIYAPRQVLAAPGDIGAEMRLFTCLIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + RQ F L SV GVG + A+ +LS T EL +I + +A+ P I K+ Sbjct: 61 YGFKTVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVARLARTPRIGKKL 120 Query: 121 ASRIMTELKG----KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ELKG K + ++ V ++ VN E + + LV+LG+ + Sbjct: 121 AERLVLELKGKLDIKGLPVAPGVSPAVAAVNAELSEM-------------LVSLGFSSAE 167 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 A+TA ++ L + + D + +RLALR Sbjct: 168 ASTA-IAALPPDAPL-DLEERLRLALR 192 >gi|118444147|ref|YP_877905.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT] gi|118134603|gb|ABK61647.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT] Length = 215 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 112/204 (54%), Gaps = 17/204 (8%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG GL +DY++++ + Y IY T++ + I + +++E +R+D I L+GFL Sbjct: 20 IKGTYMGLNKDYIIVESNNIGYKIYTSGNTMAGMPNINEKVKIYIEQIVREDFIGLYGFL 79 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + +R F LL ++ GVGA+ A+ +LS + L +I+ ++ K++ + PGI KIA RI Sbjct: 80 REDERAMFNLLLTISGVGAKAALSLLSISNVSSLKVAIMTEDYKMLTRAPGIGKKIAQRI 139 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVV 182 ELK K + + +D+ + E SM + AI ALV LG+ Q +A A+ Sbjct: 140 TLELKDK---IEKIYAEDIE--DGENISKLSMDTGRKYDEAIEALVALGFTQKEAEKAL- 193 Query: 183 SVLKKEKNIADDS---QIIRLALR 203 KNI ++ QII+ +LR Sbjct: 194 ------KNIDINNTIEQIIKDSLR 211 >gi|298370450|ref|ZP_06981766.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014 str. F0314] gi|298281910|gb|EFI23399.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014 str. F0314] Length = 193 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 14/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + +IDV GV Y + ++T L G+ L+ + +R+D L Sbjct: 1 MIGRLKGILVEKNPPQAVIDVNGVGYEVDVSMQTFYRLPATGEAVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS ++A EL +++ ++ K ++ PGI K Sbjct: 61 FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + S V+ A + + + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLV----------SAVSDGPAALSAAADGTDDIVSTLLALGYSEREAKAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + K D + +RLAL+ Sbjct: 171 VKGLPKG----TDVGEGVRLALK 189 >gi|225181939|ref|ZP_03735373.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT 1] gi|225167379|gb|EEG76196.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT 1] Length = 200 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 99/184 (53%), Gaps = 6/184 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + +D V++D QG+ + I P LS L + + LF +R+D + L Sbjct: 1 MFNYIRGTLVQKGKDTVVLDNQGIGWQISVPSTVLSGLHSLDEEVKLFTYLAVREDDLHL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F LL SV G+G + A+G+LS ++A E +++ +N K + ++PG+ K Sbjct: 61 YGFLTADDLSLFKLLISVSGIGPKAALGILSSLSAAEFHLAVMHENVKALTRVPGVGPKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +L + Q +S + + +A+ ALV LGY +A A Sbjct: 121 AKRLIVELKEKVAALGT--PQTVSATPQAGGTTSAYH----DALEALVALGYNGSEAQAA 174 Query: 181 VVSV 184 + ++ Sbjct: 175 LQTI 178 >gi|24373977|ref|NP_718020.1| Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1] gi|38372487|sp|Q8EEF2|RUVA_SHEON RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24348428|gb|AAN55464.1|AE015684_1 Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1] Length = 205 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLIDV GV Y + P+ + L ++ T++ +R+D L Sbjct: 1 MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPELNQPTTVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + + S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPVVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ D +I+ AL+++ Sbjct: 181 KAVSAAFKEG---MDSETLIKAALKSM 204 >gi|16272267|ref|NP_438479.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae Rd KW20] gi|260581219|ref|ZP_05849038.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW] gi|1173330|sp|P44632|RUVA_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|1573280|gb|AAC21976.1| Holliday junction DNA helicase (ruvA) [Haemophilus influenzae Rd KW20] gi|260092144|gb|EEW76088.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW] Length = 204 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 16/210 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173 A R++ ELKGK V Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALR 203 +A V V K E Q+IR AL+ Sbjct: 175 PVEAEKMVKRVAKPE---LTSEQVIREALK 201 >gi|326791465|ref|YP_004309286.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM 5427] gi|326542229|gb|ADZ84088.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM 5427] Length = 197 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 108/202 (53%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + E+ ++I+V GV Y ++C RTLS L + +++ H+++D L Sbjct: 1 MITYLVGTLEHIGENTLVIEVYGVGYEVFCSSRTLSELNGTREKVKIYIHEHIKEDGHDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF DR+ F L SV G+G + M V + ++ E++E I+ Q+SK ++++ GI K Sbjct: 61 YGFYHMEDRELFRKLISVSGIGPKGGMQVFNTYSSQEVIEIILNQDSKALSKVSGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK S+ + D+S + S AI AL LGY +A A Sbjct: 121 AQRIILELKD---SIGKLFVPDLSLLETG----LKDESAKAEAIEALEALGYAAQEARKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V ++ + A+ ++I+ AL Sbjct: 174 VEAIYDYK---ANSEELIKKAL 192 >gi|237654483|ref|YP_002890797.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T] gi|237625730|gb|ACR02420.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T] Length = 200 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 20/212 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y I P+ T L G +L +R+D L Sbjct: 1 MIGRITGTLLEKNPPQILVDAHGVGYEIDVPMSTFYNLPATGGTVSLHTHFVVREDGHFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L V GVGAR+A+ VLS ++ +L +++ LQ + + +IPGI K Sbjct: 61 FGFATEEERATFRQLLKVSGVGARMALAVLSGLSVNDLAQAVALQEAGRLVKIPGIGKKT 120 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL+ GKA+ M+ A + P + ++AL+ LGY + +A Sbjct: 121 AERLLLELRDKLGKALP-------SMTGARLAAAAPGAAPDAKSDILNALLALGYNEREA 173 Query: 178 TTAVVSVLKKEKNIADD---SQIIRLALRAIS 206 +A+ K +A+D S IR AL+A+S Sbjct: 174 LSAM-------KGLAEDVGVSDGIRQALKALS 198 >gi|172040615|ref|YP_001800329.1| Holliday junction DNA helicase RuvA [Corynebacterium urealyticum DSM 7109] gi|229560025|sp|B1VDJ7|RUVA_CORU7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171851919|emb|CAQ04895.1| ruvA [Corynebacterium urealyticum DSM 7109] Length = 206 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 16/212 (7%) Query: 1 MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 MI ++G++ +GL DYV+I+ GV Y TL+ L + G+ + +R D Sbjct: 1 MISSLRGDVIDKGL--DYVVIECGGVGYRCLATGDTLATL-RRGESAFVLTSLVIRDDAH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+ F + R+ F +LQ V GVGAR+AMGV+S + ++ ++ + K + Q PG+ Sbjct: 58 TLYAFSTSEQRETFGILQKVSGVGARLAMGVMSVLQPADIARAVEEGDIKTLQQAPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 ++A R+ +LKGK +L + Q D++ + A + ALV LG+ + Sbjct: 118 RLAERMAVDLKGKFPALEATSGQATIGDIAATGNDTA-------LQSQVVEALVGLGFTE 170 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A TAV +L+++ D S ++R AL+ +S Sbjct: 171 AKAATAVKKILEEQNGTTDPSSVLREALQRLS 202 >gi|167856020|ref|ZP_02478765.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus parasuis 29755] gi|167852859|gb|EDS24128.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus parasuis 29755] Length = 202 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 113/205 (55%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +++DVQGV Y + P+ + L + + +F +R+D L Sbjct: 1 MIGRLCGRIIEKSPPSMVLDVQGVGYEVLMPMTSFYNLPDLNEDTMIFTHLVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R F L GVG ++A+ +LS ++ +E + +I + + +IPGI K Sbjct: 61 FGFVQKQERMLFRELIKTNGVGPKLALAILSAMSVSEFMSAIEQEELAKLIKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-IN-AISALVNLGYGQDQAT 178 A R++ ELKGK S++ ++S + + ++ SM S + +N AI AL++LGY A Sbjct: 121 AERLLVELKGK---FSTLFHHEISIL-QPSGNLLSMESMSPVNEAIDALISLGYKAADAE 176 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 V V +K ++ ++ Q+IR AL+ Sbjct: 177 KMVKKVNRKSESTSE--QLIREALK 199 >gi|94264074|ref|ZP_01287873.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta proteobacterium MLMS-1] gi|93455490|gb|EAT05680.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta proteobacterium MLMS-1] Length = 212 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 115/213 (53%), Gaps = 8/213 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D ++++V GV Y ++ P L G+ L+++T +R+D L Sbjct: 1 MIATLRGQLTQKGADSLIVEVGGVGYEVFFPAGRQDRLPPRGEELFLYIQTVVREDSFCL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++Q+F+LL V GVG R+AM +L+ L +I + + ++PG+ K Sbjct: 61 YGFVDAAEKQFFLLLLGVSGVGPRLAMNILAAAAPDVLGRAIATDDIAGLKKLPGVGKKT 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R+ ELK K + + + D + ++ A + P F +A SAL+NLGY +A Sbjct: 121 AERLCLELKDKVDFFPAAKPLARPDQAPPAEQGADFGAQPVFQ-DAYSALLNLGYPPVRA 179 Query: 178 TTAVVSVLKK-EKNIADD---SQIIRLALRAIS 206 +A+ V ++ E+ A + +++R+ LR+++ Sbjct: 180 RSALEEVRRQLEQEPAGELPLPELLRITLRSLA 212 >gi|46143844|ref|ZP_00133975.2| COG0632: Holliday junction resolvasome, DNA-binding subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207771|ref|YP_001052996.1| Holliday junction DNA helicase RuvA [Actinobacillus pleuropneumoniae L20] gi|303252521|ref|ZP_07338684.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247270|ref|ZP_07529319.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249498|ref|ZP_07531486.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256311|ref|ZP_07538094.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260744|ref|ZP_07542433.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166229626|sp|A3MZ05|RUVA_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126096563|gb|ABN73391.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648489|gb|EFL78682.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856243|gb|EFM88397.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858491|gb|EFM90559.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306865137|gb|EFM97037.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869583|gb|EFN01371.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 201 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQATT 179 A R++ ELKGK V Q D + + + + A A ALV LGY A Sbjct: 121 AERLLVELKGK---FKGVAQSDFFEEHSVETIVATHSHDPADEARDALVALGYKLADAEK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 178 MIKKV---NKAGATSEQLIREALKA 199 >gi|310643559|ref|YP_003948317.1| holliday junction ATP-dependent DNA helicase ruva [Paenibacillus polymyxa SC2] gi|309248509|gb|ADO58076.1| Holliday junction ATP-dependent DNA helicase ruvA [Paenibacillus polymyxa SC2] Length = 204 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 5/198 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ L +YV++DVQGV Y ++CP K ++ H+R+D I L Sbjct: 1 MIDFLRGSVAHLENEYVVLDVQGVGYRVFCP--NPYAFAKTEGPVVIYTHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q F L V G+G RVA+G+L T +V +I +N + ++PGI K Sbjct: 59 FGFATREEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + + E A S+ A AL LGY D Sbjct: 119 AQRMILDLKDKLDGIGALGM--ATGLFAEPAVEEGQGSYWSEAREALKALGY-TDAELDK 175 Query: 181 VVSVLKKEKNIADDSQII 198 V S +KK+ D + I+ Sbjct: 176 VWSKMKKDAKPDDSADIL 193 >gi|169831522|ref|YP_001717504.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis audaxviator MP104C] gi|229560028|sp|B1I477|RUVA_DESAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169638366|gb|ACA59872.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis audaxviator MP104C] Length = 202 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 110/207 (53%), Gaps = 14/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +Y + V+++V G+ Y + P + L + G+ L+ +++ + + Sbjct: 1 MIDFLKGRLVSVYPEAVVVEVGGIGYRVQVPPSLAASLPEPGETVFLYTYLSVKETALEM 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+LDR F+LL V G+G R A+ V+ R+ L +I+ +++ ++ +PGI +K Sbjct: 61 FGFSSELDRTAFLLLLGVAGIGPRTALAVVGRLGTRRLWAAILREDTGILTTVPGIGVKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----INAISALVNLGYGQDQ 176 A RIM EL+ + +++ V+ E +P A A++AL++LGY + Sbjct: 121 ARRIMVELRDR-------LEKQQVAVSAELPASDGVPVLAGRAENEALAALISLGYTPRE 173 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 A A+ + ++ D + ++ ALR Sbjct: 174 AREALNRLPDRK---LDAAGLVHAALR 197 >gi|114776334|ref|ZP_01451379.1| putative Holliday junction DNA helicase RuvA [Mariprofundus ferrooxydans PV-1] gi|114553164|gb|EAU55562.1| putative Holliday junction DNA helicase RuvA [Mariprofundus ferrooxydans PV-1] Length = 188 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 20/207 (9%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G + L VL+ G+ Y + ++TL C ++G+ L + T++R+DQI Sbjct: 1 MIGWLSGTVRALDPAGSVLLVTGGIGYDVSVSVQTL-CKLRLGEAAELSIHTYVREDQIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +R+ F L SV G+GAR+A+ ++ ++ EL+ +I + IA+ PGI K Sbjct: 60 LFGFANSNEREIFRKLTSVSGIGARMALNLMGGMSIEELIGAIEHADDLAIARTPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL+GK L SV + + ++ + + SAL NLGY Q Sbjct: 120 TAQRLILELQGK---LGSVAAEGGAAISNKADEVR----------SALTNLGYKPAQIDL 166 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ K AD + R AL+A+S Sbjct: 167 AL-----KHVEPADFESMFRAALKAMS 188 >gi|254449000|ref|ZP_05062454.1| Holliday junction DNA helicase RuvA [gamma proteobacterium HTCC5015] gi|198261394|gb|EDY85685.1| Holliday junction DNA helicase RuvA [gamma proteobacterium HTCC5015] Length = 205 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 112/210 (53%), Gaps = 17/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + ++L+DV GV Y + P+ T+ L G + + TH+R+D I+L Sbjct: 1 MIGRLSGTLISKQAPHLLVDVNGVGYEVEAPLSTVFELPAEGQAVVVLIHTHVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F +D++R++F L + GVGA++A+ ++S +A + + +++ + ++PG+ K Sbjct: 61 FAFGTDIERRFFRSLIKINGVGAKMALAIMSGASAETFAQWVDQEDTAALTKLPGVGKKT 120 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQ 176 A R++ E++ K + + +V + V+ S P S A++AL LGY + Sbjct: 121 AERLVIEMRDRLDKEVFMGAVPSLPKAGVSA----TASAPMSREDEAVAALEGLGYRAAE 176 Query: 177 ATTAVVSVLKKEKNIADD---SQIIRLALR 203 A V V + DD ++IRLAL+ Sbjct: 177 ARKMVAKVAQ------DDLPTEEMIRLALQ 200 >gi|293390518|ref|ZP_06634852.1| holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951052|gb|EFE01171.1| holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 204 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQG+ Y + P+ + L ++G LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTRLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPGI K Sbjct: 61 FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELKGK + + VQ D + + I + + A++ALV LGY A Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQAD--HLPRFSTEISATVEPSNEAVAALVALGYKPLDA 178 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 V V K E QIIR AL+A Sbjct: 179 EKMVKKVSKPE---LSSEQIIREALKA 202 >gi|307266570|ref|ZP_07548102.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii Rt8.B1] gi|306918424|gb|EFN48666.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii Rt8.B1] Length = 187 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 15/184 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + +DYV+ID G+ ++ P TL L G+ L+ HMR+D +++ Sbjct: 1 MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGLQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS ++ V+++ + + K + PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V++ D +F+ A+ AL+ LGY + +A A Sbjct: 121 AERIILELKDK-LPKKIVLEGD--------------NNFSNEALEALLALGYTKSEAIYA 165 Query: 181 VVSV 184 + + Sbjct: 166 LADI 169 >gi|42520918|ref|NP_966833.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Drosophila melanogaster] gi|99035955|ref|ZP_01315000.1| hypothetical protein Wendoof_01000161 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|81652227|sp|Q73G51|RUVA_WOLPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|42410659|gb|AAS14767.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Drosophila melanogaster] Length = 190 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 113/208 (54%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MIG + G ++ + D+++++V V Y++Y +TL+ IG L +ET+ R++ Sbjct: 1 MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLNACS-IGSRVKLLIETYANNRENVA 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF+S ++Q LL V GV + AM +L ++T +L + I+ KV ++ G+ + Sbjct: 60 QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILGKLTPEQLFLA-IMNEDKVALKMSGLGL 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L +N H + +A+SAL+NLGY + +A Sbjct: 119 KLINRIITELSGKVSKLE---------INNNNFHPINE-----DALSALINLGYEKMKAY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + KK + D IIR+AL+ +S Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELS 188 >gi|269123417|ref|YP_003305994.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis DSM 12112] gi|268314743|gb|ACZ01117.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis DSM 12112] Length = 200 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 18/196 (9%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID+ GV Y IY I+T L IG+ L++ T +++D I FGF ++L+R F+ Sbjct: 15 NYVVIDINGVGYKIYTSIKTYDKLNSIGEKERLYIHTIVKEDDISFFGFKNELERSIFLE 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE----LKG 130 ++ G+GA+ A+ +LS EL +N K +A++PGI MK A +IM + L+G Sbjct: 75 CIAINGIGAKKAIAILSNFEFEELAAIASSKNFKELAKVPGIGMKKAEKIMVDLSDKLEG 134 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190 I+ SS Q + NK++ N AL +LGY + + KE N Sbjct: 135 LKITNSSSSQDIVELYNKKE-----------NLRLALESLGYEKVNINNIIEDKYIKELN 183 Query: 191 IADDSQIIRLALRAIS 206 + ++I++AL I+ Sbjct: 184 M---QELIKMALLNIN 196 >gi|296313720|ref|ZP_06863661.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC 43768] gi|296839643|gb|EFH23581.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + V + E + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLV--AHTVTDGLFAAPSENDETNDI-------VSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V K D + +RLAL+ Sbjct: 172 VKGVPKG----TDVGEGVRLALK 190 >gi|126668399|ref|ZP_01739356.1| Holliday junction DNA helicase motor protein [Marinobacter sp. ELB17] gi|126627108|gb|EAZ97748.1| Holliday junction DNA helicase motor protein [Marinobacter sp. ELB17] Length = 209 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 18/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +++ QG+ Y + P+ T L G TL +R+D L Sbjct: 1 MIGRIRGILLEKKPAQAMVECQGLGYEVDIPLSTFLNLPDPGQELTLHTHFVVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S LDR F LL V GVG ++A+G+LS ++A++ + S+ +++ + ++PG+ K Sbjct: 61 FGFSSRLDRDLFRLLIKVNGVGPKLAVGILSGLSASQFIRSVQARDTSALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+ + L Q +++ + A + + A N A +AL+ LGY Sbjct: 121 AERLLIEMTDRIGQLEG--QFELTAASAPGATLPANGMPAANDPREEAEAALIALGYKPQ 178 Query: 176 QATTAVVSVLKKEKNIADD----SQIIRLALR 203 +A A+ IA+D Q+IR+ALR Sbjct: 179 EAAKAI-------SRIAEDGMTNEQLIRMALR 203 >gi|85712318|ref|ZP_01043369.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina baltica OS145] gi|85693945|gb|EAQ31892.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina baltica OS145] Length = 206 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VL+DVQGV Y I P+ L G+ TL +R+D L Sbjct: 1 MIGQIRGTLVSKQPPEVLVDVQGVGYEIQLPMTCFYQLPATGEPVTLVTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F LL QGVG ++A+ +LS + A E V ++ + + ++PG+ K Sbjct: 61 YGFNSLAERSLFRLLIKTQGVGPKLALAILSGMNADEFVWAVNQNDVSRLVKLPGVGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQA 177 A R++ E++ K SS D + ++ P+ A N A+SAL+ LGY QA Sbjct: 121 AERLVIEMRDRLKDWQGSSTPATDAAPLDNVSGDALVHPADARNDALSALLALGYKPVQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ +V ++ ++ +IR AL+ +S Sbjct: 181 EKALKAVYQQGES---SETLIRSALKQLS 206 >gi|30248236|ref|NP_840306.1| Holliday junction DNA helicase subunit [Nitrosomonas europaea ATCC 19718] gi|44888448|sp|Q820S3|RUVA_NITEU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|30180121|emb|CAD84123.1| probable Holliday junction DNA helicase subunit [Nitrosomonas europaea ATCC 19718] Length = 195 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 16/184 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + VL+DV G+ Y I P+ T L IG+ TL +R+D L Sbjct: 1 MIGRIAGLLLEKHPPLVLVDVNGIGYEIDVPMSTFCRLPGIGEQVTLHTHFWVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+++ +R F L + G+GAR + +LS ++ +L + ++ Q+S + +IPGI K Sbjct: 61 FGFMTEPERVLFRQLTKISGIGARTGLAILSGLSVNDLHQIVVSQDSTRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGK---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL+ K AI+L S +K+ +NA+SA LGY +A Sbjct: 121 AERLLLELRDKISPAITLPETGTAMASSTDKD----------ILNALSA---LGYNDREA 167 Query: 178 TTAV 181 AV Sbjct: 168 NWAV 171 >gi|309972527|gb|ADO95728.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus influenzae R2846] Length = 204 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173 A R++ ELKGK V Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V K Q+IR AL+A Sbjct: 175 PVEAEKMVKRV---AKPALTSEQVIREALKA 202 >gi|313894615|ref|ZP_07828178.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158 str. F0412] gi|313440805|gb|EFR59234.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158 str. F0412] Length = 202 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 112/202 (55%), Gaps = 7/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + Q + AI ALV+LGY + Sbjct: 120 AERLVLELKDKLAKMTHISTESSAVI---QPIGVTASGATGEAIEALVSLGYSERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V S+ ++++ S++I+++L Sbjct: 177 VESLDDGKRDV---SELIKVSL 195 >gi|240144037|ref|ZP_04742638.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82] gi|257203963|gb|EEV02248.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82] gi|291536276|emb|CBL09388.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis M50/1] Length = 203 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + E+ ++++ G+ Y IY +T L +G+ ++ H+R+D + L Sbjct: 1 MYSYIKGILRDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + + + LL V G+G + A+ +LS +T +L +++ ++K IA+ PG+ K Sbjct: 61 FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K +SL +Q + + H + A+ ALV LGY +A Sbjct: 121 AQRLILELKDK-MSLEDAFEQKFEKTGEPAENHAQGTKN---EAVQALVALGYSSSEALR 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + E+ D +I+++AL+ ++ Sbjct: 177 ALNGIEITEET--DVEEILKMALKNMA 201 >gi|153855299|ref|ZP_01996465.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814] gi|149752298|gb|EDM62229.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814] Length = 204 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +EG+ ED V++DV GV Y IY + L +G + H+++D ++L Sbjct: 1 MITYIRGILEGMEEDKVIVDVGGVGYGIYMAGTAMGRLPALGKEVKIHTHLHVKEDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F LL V G+G + +G+LS + +L ++ + K I PGI K Sbjct: 61 YGFLTRDELRVFRLLIGVSGIGPKGGLGILSALGPDDLRFAVASNDVKAIQAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A +++ ELK K + L ++ + V M + A+ ALV LGYG +A Sbjct: 121 AEKLILELKDK-LKLEDALENAANAVQNTADTSAGMANEMTGEAVQALVALGYGNTEALK 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV V E+ +D ++R +L+ Sbjct: 180 AVRQVEITEEMSVED--VLRQSLK 201 >gi|302386617|ref|YP_003822439.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum WM1] gi|302197245|gb|ADL04816.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum WM1] Length = 202 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 4/194 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + ++ED V+I+ V + I+ P+ L L IG L+ +R+D + L Sbjct: 1 MISFIKGPLAEIFEDTVVIESGNVGFEIHAPLSVLEKLPGIGVEIKLYTYFQVREDAMCL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D Q F L SV G+G + A+G+LS + EL +II ++K I++ PG+ K Sbjct: 61 FGFLNRQDLQMFQQLISVNGIGPKGALGILSALRPEELRRAIISGDAKAISKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K I L+ ++ S + + A+ AL LGY +A A Sbjct: 121 AQRIILDLKDK-IDLAEILP---SGFTESADKVILSGGVTEEALEALTALGYSAAEAGRA 176 Query: 181 VVSVLKKEKNIADD 194 V V E +D Sbjct: 177 VRQVEVTESMTVED 190 >gi|188591242|ref|YP_001795842.1| holliday junction DNA helicase ruva [Cupriavidus taiwanensis LMG 19424] gi|229560026|sp|B2AH73|RUVA_CUPTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170938136|emb|CAP63122.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Cupriavidus taiwanensis LMG 19424] Length = 193 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L +G TL + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + G+GAR+A+ VLS ++ EL ++I LQ + + +IPGI K Sbjct: 61 YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177 A R++ + + E H P+ A++ ++AL+ LGY + +A Sbjct: 121 AERLLL--------------ELKGKLGAELGHAPGTPAVPDSAVDVLNALLALGYSEKEA 166 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ K+ S+ I+LAL+A+S Sbjct: 167 AAAI----KQVPAGTGVSEGIKLALKALS 191 >gi|57239403|ref|YP_180539.1| Holliday junction DNA helicase RuvA [Ehrlichia ruminantium str. Welgevonden] gi|58579373|ref|YP_197585.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Welgevonden] gi|81352832|sp|Q5HAK5|RUVA_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57161482|emb|CAH58408.1| putative Holliday junction DNA helicase RuvA [Ehrlichia ruminantium str. Welgevonden] gi|58417999|emb|CAI27203.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Welgevonden] Length = 191 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 122/208 (58%), Gaps = 20/208 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58 MIG I GN+E + + Y++++V + YIIY + L +C K+GD L++ET++ +D I Sbjct: 1 MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQTC--KVGDNIKLYIETYVNRDNIT 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GFL+ ++ + +L ++ G+ + A+ +LS+++ E + S ++ N K+ + GI Sbjct: 59 QLYGFLNRQEQDYLKMLVTINGINYKTALSILSKLSP-EQIFSAVVNNDKIAFKGNGIGE 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+A RI+TEL+ K + +++ S + + ++++AL++LGY + +A Sbjct: 118 KLAGRIITELQYKINKMP--IEETFSIIEND------------DSLAALISLGYEKLKAF 163 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 V+ +K + A ++IR AL+ +S Sbjct: 164 N-VIQEIKSKTPDASTQEVIRKALQKLS 190 >gi|114330310|ref|YP_746532.1| Holliday junction DNA helicase RuvA [Nitrosomonas eutropha C91] gi|122314644|sp|Q0AJA4|RUVA_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114307324|gb|ABI58567.1| Holliday junction DNA helicase subunit RuvA [Nitrosomonas eutropha C91] Length = 194 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 11/181 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + VL+DVQG Y I P+ T L IG TL +R+D L Sbjct: 1 MIGRITGLLLEKHPPLVLVDVQGTGYEIDVPMSTFCKLPDIGKKVTLHTHFWVREDVHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+++ +R F L + G+GAR + +LS ++ T+L ++++ Q+S + +IPGI K Sbjct: 61 FGFMTEQERALFRQLTKISGIGARTGLAILSGLSVTDLHQAVVSQDSIRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ + + + N ++ + +SAL+ LGY + A Sbjct: 121 AERLLLELRDKIDPVAILSEAGAAASNVDK-----------DILSALLALGYNGREVNRA 169 Query: 181 V 181 + Sbjct: 170 L 170 >gi|256425896|ref|YP_003126549.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM 2588] gi|256040804|gb|ACU64348.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM 2588] Length = 195 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V IDVQGV Y + + T S + + + C L H+++D L Sbjct: 1 MIAYLNGKLSYKSPAMVHIDVQGVGYEVQISLNTYSRI-QGSESCKLLTYLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F+LL SV G+GA A +LS + ++ +I ++N K++ I GI K Sbjct: 60 YGFADDAERQMFLLLISVSGIGANTARMMLSSLQPEDIQRAIAMENEKMLESIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K Q+D+ Q + + +A++ALV LG ++ A A Sbjct: 120 AKRVILELKDKVKK-----QKDIG----NQISVTPNNTIQEDALNALVTLGIARNVAEQA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK E + D +I+ +L+ + Sbjct: 171 INKVLKAEPLLLDLEALIKKSLKGL 195 >gi|253699567|ref|YP_003020756.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21] gi|259495645|sp|C6E1S9|RUVA_GEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|251774417|gb|ACT16998.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21] Length = 199 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 11/197 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++++DV GV Y ++ P T L G +L + T +++D I L Sbjct: 1 MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPAEGGALSLQIHTSVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL V GVG ++A G+LS +EL +S++ N ++ IPGI K Sbjct: 61 YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L Q + I + +SAL+NLGY + A Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGATAPAKQEIRD------DVLSALINLGYKE-----A 169 Query: 181 VVSVLKKEKNIADDSQI 197 VV E + +D+ + Sbjct: 170 VVQKALAELKVTEDATV 186 >gi|254281679|ref|ZP_04956647.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B] gi|219677882|gb|EED34231.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B] Length = 207 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + + +++DV GV Y I P+ TL L IG +L +R+D +L Sbjct: 1 MIGRIRGILAAKHPPEIVVDVGGVGYEIQVPMTTLFQLPDIGTEVSLVTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S++DR+ F L V GVG R+A+ +LS + A E + + + +PG+ K Sbjct: 61 FGFVSEVDRRLFRELIKVSGVGPRLALTLLSGMDAREFSRCLQRDDVASLVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E++ KA + +M+ + P A + A ALV LGY Sbjct: 121 AERLLVEMRDKAGKWLGELSPEMATT------VGVAPGPAPDDAREEAEQALVALGYKLA 174 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 A+ V SV + + A Q+IR AL+A Sbjct: 175 DASRLVASV---DDSGASSEQLIRRALQA 200 >gi|261868502|ref|YP_003256424.1| Holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413834|gb|ACX83205.1| holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 204 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQG+ Y + P+ + L ++G LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTCLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPGI K Sbjct: 61 FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELKGK + + VQ D + + I + + A++ALV LGY A Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQAD--HLPRFSTEISATVEPSNEAVAALVALGYKPLDA 178 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 V V K E QIIR AL+A Sbjct: 179 EKMVKKVSKPE---LSSEQIIREALKA 202 >gi|91785164|ref|YP_560370.1| Holliday junction DNA helicase motor protein [Burkholderia xenovorans LB400] gi|296157351|ref|ZP_06840187.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1] gi|123358465|sp|Q13UC1|RUVA_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91689118|gb|ABE32318.1| DNA recombination protein, RuvA [Burkholderia xenovorans LB400] gi|295892687|gb|EFG72469.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1] Length = 193 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + D+ + S A + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKGK-------IGADLGAMAG----AASASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 V KN+ S+ I+LAL+A+S Sbjct: 170 V-------KNVPAGTGVSEGIKLALKALS 191 >gi|326560238|gb|EGE10626.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 7169] gi|326566444|gb|EGE16594.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC1] Length = 204 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + C IG ++V H+R+D I Sbjct: 1 MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSF-CQLTIGTQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK + + + A + SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPADNSML--IVAEVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|149196353|ref|ZP_01873408.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa HTCC2155] gi|149140614|gb|EDM29012.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa HTCC2155] Length = 206 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 110/215 (51%), Gaps = 17/215 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + L +IDV GV Y + P+ T L K+G L + +R+D + L Sbjct: 1 MIAHLKGQLVELELSNAVIDVGGVGYYVDIPMSTYDRLPKVGSPVALRIHMTVREDAMNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R +F ++ SV G+G ++A+ LS + E+I N K++++I G+ ++ Sbjct: 61 YGFATDEERSFFRMITSVSGIGPKIALAALSALPTETFCEAIQEGNIKLLSKISGVGKRM 120 Query: 121 ASRIMTELKGK--AISLSS-----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ EL+ K A+ ++S V DMS +KE + ++I AL LGY Sbjct: 121 AERMVVELRDKVGALGMTSAFVAKVADDDMSAQDKEAFN---------DSIMALEALGYR 171 Query: 174 QDQATTAVVSVLKKEKNIADDSQ-IIRLALRAISC 207 D V ++ S+ II+ AL A++ Sbjct: 172 PDTIRKTVKTIFDGLSPAQRSSENIIKAALSAMNS 206 >gi|311113689|ref|YP_003984911.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia dentocariosa ATCC 17931] gi|310945183|gb|ADP41477.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia dentocariosa ATCC 17931] Length = 206 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G++ + + ++DV G ++ RTLS L + G TL +R+D + L Sbjct: 1 MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TATE+ ++ + K ++PGI K Sbjct: 60 YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I + +D + N I P + AL +LG+ + A A Sbjct: 120 ARRIVLELAGKLI-----LSKDQAEENAPAQGIAWKPQV----MDALTSLGWSEKDADAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + N + + + ALR + Sbjct: 171 IDAYV--QHNPDAEKEAVSAALRGV 193 >gi|225025938|ref|ZP_03715130.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353] gi|224956724|gb|EEG37933.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353] Length = 230 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 111/205 (54%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +I IKG + +D V+I+ G+ Y I P R L + G+ L ++R+DQ+ L Sbjct: 27 LISYIKGTVAYKGKDSVVIENHGIGYQIKVPSRVLEGVNS-GEEAMLHTYLYVREDQLAL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F +L + G+G + A+ VLS ++ +L ++ +++K IA+ PGI K Sbjct: 86 FGFSSIQELETFQILLGISGIGPKAALSVLSTMSVEDLYYAVFSEDAKSIAKTPGIGPKG 145 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++L ++ + Q+ S A + + ALV LGY +A A Sbjct: 146 AKRMIIELKDK-LNLEALESVSGAEEAAPQSSFTEGDSIA-DTVQALVALGYSNGEAYRA 203 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V SV + EK D Q+++ AL+ + Sbjct: 204 VHSVPEAEK--LDAEQLLKEALKKV 226 >gi|160892584|ref|ZP_02073374.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50] gi|156865625|gb|EDO59056.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50] Length = 200 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + E+Y++ID G+ Y I+ + L + G ++ ++R+D++ L Sbjct: 1 MIAYIAGALVSAGENYIVIDNHGMGYRIFVSGKFLERIPAYGTQIKVYTHMYIREDELTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F +L + GVG +VAM +L+ +T EL ++I +++K I++ G+ K Sbjct: 61 YGFHSEEELSVFRILIGISGVGPKVAMAILTALTIQELQLAVISEDAKTISKANGVGTKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ--AHICSMPSFAINAISALVNLGYGQDQAT 178 ASRI+ ELK K + +DM EQ A + A +AI ALVNLGY +A Sbjct: 121 ASRIILELKDK------LKMEDMMDAAYEQSIAQNTQDVNAARDAILALVNLGYSNSEAA 174 Query: 179 TAVVSVLKKEKNIA--DDSQIIRLALRAI 205 AV KK +I D I++ AL+ + Sbjct: 175 LAV----KKIGDIGQMDTEAILKAALKKL 199 >gi|225572217|ref|ZP_03781081.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM 10507] gi|225040279|gb|EEG50525.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM 10507] Length = 201 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT---LFVET--HMRQ 55 MI +KG + G+ E +L++ G+ Y I+ P+ G++ T L V T H+R+ Sbjct: 1 MIAFMKGTLAGIEETKILLEHDGIGYEIFIPMD-----GRVDRLYTGQELMVHTYLHVRE 55 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D ++L+GFL+ D + F LL V GVG + A+G+LS I+A EL +++ ++ K I++ PG Sbjct: 56 DVLQLYGFLTRDDLEIFRLLLGVNGVGPKAALGILSAISADELRFAVLAEDIKTISKAPG 115 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I K A +++ ELK K ++L ++ + A + A AL LGYG Sbjct: 116 IGRKTAQKLVLELKDK-LNLQDAFEKKLEHEYSSSAS-QEITDARQEAAEALTALGYGST 173 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 QA AV V EK D +++ AL+ Sbjct: 174 QALQAVRKVDGWEK--MDVETLLKAALK 199 >gi|326390112|ref|ZP_08211673.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus JW 200] gi|325993760|gb|EGD52191.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus JW 200] Length = 187 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 15/184 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + +DYV+ID G+ ++ P TL L G+ L+ HMR+D ++ Sbjct: 1 MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS ++ V+++ + + K + PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V + D + N+ A+ AL+ LGY + +A A Sbjct: 121 AERIILELKDK-LPKEIVFEGDNNFSNE--------------ALEALLALGYTKSEAIYA 165 Query: 181 VVSV 184 + + Sbjct: 166 LADI 169 >gi|160879481|ref|YP_001558449.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans ISDg] gi|189045749|sp|A9KNV9|RUVA_CLOPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160428147|gb|ABX41710.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans ISDg] Length = 203 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + + E+YV++D G+ Y I+ P S L IGD +R+D + L Sbjct: 1 MLAFIQGELAEVKENYVVVDNNGMGYEIFIPHTVHSYLPAIGDKVKFHTYLQVREDGMAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL +V G+G + A+G+LS I+ +L +++ ++ K I++ PGI K Sbjct: 61 FGFLNREDLAMFKLLITVNGIGPKGAIGILSAISTDDLRFAVLAEDVKAISKAPGIGTKT 120 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 AS+++ ELK K A + Q +S K + AI ALV LGY Sbjct: 121 ASKLILELKDKFKLEDAFEATFQSNQVISTGGK-----GNNDGIREEAIQALVALGYSAT 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 A AV +V ++D +++ +LR Sbjct: 176 DALKAVKAVEITSNMTSED--VLKFSLR 201 >gi|225568080|ref|ZP_03777105.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM 15053] gi|225163033|gb|EEG75652.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM 15053] Length = 205 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 2/185 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + ED V++DV GV Y IY +++S L G + ++++D ++L Sbjct: 1 MISYIRGELAAVEEDKVIVDVGGVGYGIYMSGQSMSLLPSAGREVKIHTYLNVKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F L+ V G+G + +G+LS ++ +L ++I + K I PGI K Sbjct: 61 FGFLTRDDLDIFRLIIGVNGIGPKGGLGILSALSPDDLRFAVISNDVKAIQAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ ELK K + + V++ N A S+ A+ ALV LGYG ++ Sbjct: 121 AEKLILELKDK-LRIEDVLEHAAHGSENTSAAAAASVNEVQSEAVQALVALGYGSTESLK 179 Query: 180 AVVSV 184 AV V Sbjct: 180 AVKQV 184 >gi|153814820|ref|ZP_01967488.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756] gi|331089652|ref|ZP_08338551.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 3_1_46FAA] gi|145847851|gb|EDK24769.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756] gi|330405020|gb|EGG84558.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 3_1_46FAA] Length = 204 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 102/192 (53%), Gaps = 21/192 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + E +IDV G+ Y ++ P + L+ L +G+ L+ ++R+D ++L Sbjct: 1 MISYVKGELAAIEEQKAIIDVGGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS ++ EL +I+ ++K+I+ PGI K Sbjct: 61 FGFLTKDDLEIFRLVIGVSGIGPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKT 120 Query: 121 ASRIMTELKGK---------AISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVN 169 A +++ EL+ K A +Q DM + N+ Q+ A+ ALV Sbjct: 121 AEKLIVELRDKVDIEKMLDHAAHPEETIQTDMAKTSANEMQSE----------AVQALVA 170 Query: 170 LGYGQDQATTAV 181 LGYG ++ AV Sbjct: 171 LGYGSAESLRAV 182 >gi|113866527|ref|YP_725016.1| Holliday junction DNA helicase RuvA [Ralstonia eutropha H16] gi|123033276|sp|Q0KEC3|RUVA_RALEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113525303|emb|CAJ91648.1| holliday junction resolvasome, DNA-binding subunit RuvA [Ralstonia eutropha H16] Length = 193 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L +G TL + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEVDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL ++I LQ + + +IPGI K Sbjct: 61 YGFGTASERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177 A R++ + + E H+ P+ A++ ++AL+ LGY + +A Sbjct: 121 AERLLL--------------ELKGKLGAELGHVPGTPAVPDSAVDVLNALLALGYSEKEA 166 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V ++D I+LAL+A+S Sbjct: 167 AAAIKQV-PAGTGVSDG---IKLALKALS 191 >gi|118594338|ref|ZP_01551685.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium HTCC2181] gi|118440116|gb|EAV46743.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium HTCC2181] Length = 193 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 108/206 (52%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+IKG + +LID QGV Y I P+ T L G TL +R+D L Sbjct: 1 MIGRIKGYLLEKIPPIILIDCQGVGYEIEVPMTTFFDLPDEGSEITLLTHLIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L V G+GA+VA+ +L I +++L ++I + ++ +IPGI K Sbjct: 61 FGFATAAERQMFRQLIKVNGIGAKVALSILGSIGSSDLADAIQHDDINMLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + L D S V K HI + +AL++LGY A+ A Sbjct: 121 AERLVLELKDRLKDL----HIDPS-VKKHATHIEDIE-------NALISLGYSAKDASMA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +L + +I D IR AL+++S Sbjct: 169 -IKLLPENISINDG---IRQALKSLS 190 >gi|270307810|ref|YP_003329868.1| Holliday junction DNA helicase [Dehalococcoides sp. VS] gi|270153702|gb|ACZ61540.1| Holliday junction DNA helicase [Dehalococcoides sp. VS] Length = 194 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 14/185 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G++G +F H+R+D + L Sbjct: 1 MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 ASRI+ ELK K A S + V ++ N + ++ L LGY +A Sbjct: 121 ASRIVLELKDKIAKSWEAGVLSQVTEANSD-------------ILATLTALGYSAGEAAK 167 Query: 180 AVVSV 184 A+ S+ Sbjct: 168 AIASL 172 >gi|261337766|ref|ZP_05965650.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM 20093] gi|270277219|gb|EFA23073.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM 20093] Length = 212 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 11/214 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LIDV GV Y + L+ L +G T+F + QD I L Sbjct: 1 MIGMLSGQVAAVDTAAALIDVHGVGYEVRMAGADLATL-HVGQDATVFTSMSVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL ++ F+ LQ V G+G +VA+ +L + A +L +I ++ +A+ PG+ K Sbjct: 60 FGFLDHAAKRMFLQLQKVSGIGPKVALSLLGTLDAGQLAHAIYDGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178 A +I+ ELKG SL D S + A P ++ + AL++LG+ Q A Sbjct: 120 AQKIILELKG---SLDLAALDDASGSDTSVAASAHAPEDRGRLDVVEALISLGWRQQDAQ 176 Query: 179 TAVVSVLKKEK---NIADD--SQIIRLALRAISC 207 AV SV+ ++ +A D +++R AL ++ Sbjct: 177 HAVDSVIHEQDLPTPLAADMVPEVLRAALTSLDS 210 >gi|303241604|ref|ZP_07328103.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus CD2] gi|302590824|gb|EFL60573.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus CD2] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +E + +Y++++ GV Y IY + T+ + IG ++ ++R+D + L Sbjct: 1 MFAYIRGKLEYKHNEYIVVEANGVGYKIYTSLSTIQNVESIGSEVKIYTHLYVREDIMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL V GVG + A+ V+S ++ ++ S+I + K + + GI K+ Sbjct: 61 YGFLTQEEMGMFELLLGVSGVGPKAAISVISSMSPSKFGLSVITDDYKSLTKAQGIGNKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSM--PSFAINAISALVNLGYGQDQA 177 A RI+ ELK K + + DM + N + I + S AISALV LGY +A Sbjct: 121 AQRIILELKDK------IDKTDMVTSFNGKDGAIPANNDNSRVSEAISALVVLGYTATEA 174 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + AV SV + ++ II+ AL+ ++ Sbjct: 175 SKAVASVYSDDMDL---ECIIKSALKGLA 200 >gi|326562883|gb|EGE13170.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 46P47B1] gi|326563676|gb|EGE13928.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 103P14B1] gi|326565244|gb|EGE15429.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 12P80B1] gi|326570251|gb|EGE20296.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC8] gi|326570988|gb|EGE21012.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC7] gi|326573284|gb|EGE23252.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 101P30B1] gi|326576898|gb|EGE26804.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis O35E] Length = 204 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + C IG ++V H+R+D I Sbjct: 1 MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSF-CQLTIGAQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK + + + A SM A SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPAD-NSMLIIA-EVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|161510997|ref|YP_087904.2| Holliday junction DNA helicase motor protein [Mannheimia succiniciproducens MBEL55E] gi|88941980|sp|Q65UP1|RUVA_MANSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 204 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV G+ Y + P+ + L +IG LF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSF-AINAISALVNLGYG 173 A R++ ELKGK + Q D E +H+ ++ P A A++AL+ LGY Sbjct: 121 AERLLVELKGK---FKGIKQPDFFV---ESSHVGAVDPVTTSPEVPAEEAVAALMALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A V + K Q+IR AL+A Sbjct: 175 ASDAEKMVKRIAKPHLT---SEQLIREALKA 202 >gi|257126622|ref|YP_003164736.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis C-1013-b] gi|257050561|gb|ACV39745.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis C-1013-b] Length = 207 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 105/195 (53%), Gaps = 8/195 (4%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 DYV +D+ G+ Y IY ++T + I L++ T++++D I L+GF + +R+ F Sbjct: 15 DYVALDINGLAYKIYISLKTFEKMSNIESTEKLYIHTNVKEDNISLYGFKTQNERELFKA 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG--KA 132 L SV GVG ++A+ +LS E+V+ I+ K+ ++PG+ +K A +I+ +LK K Sbjct: 75 LISVNGVGPKLAIAILSTFNTKEIVDIILENEPKIFIKVPGLGIKKAQKIILDLKDKVKK 134 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK--N 190 + S ++ ++ + +N + + AL +LGY A T V +K ++ Sbjct: 135 LEFSEIINENSNTLNGNNISSSEILLMKEDLKLALESLGY----ADTDVSKWIKNDELIK 190 Query: 191 IADDSQIIRLALRAI 205 I + S+ I++ L+ I Sbjct: 191 IKNISEAIKIILKRI 205 >gi|52306819|gb|AAU37319.1| RuvA protein [Mannheimia succiniciproducens MBEL55E] Length = 215 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV G+ Y + P+ + L +IG LF +R+D L Sbjct: 12 MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 71 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 72 FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 131 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSF-AINAISALVNLGYG 173 A R++ ELKGK + Q D E +H+ ++ P A A++AL+ LGY Sbjct: 132 AERLLVELKGK---FKGIKQPDFFV---ESSHVGAVDPVTTSPEVPAEEAVAALMALGYK 185 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A V + K Q+IR AL+A Sbjct: 186 ASDAEKMVKRIAKPH---LTSEQLIREALKA 213 >gi|296113247|ref|YP_003627185.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4] gi|295920941|gb|ADG61292.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4] Length = 204 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + C IG ++V H+R+D I Sbjct: 1 MIGMISGRVQYLNAPIACILTSNGVGYEIELPIPSF-CQLTIGAQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK + + + A SM A SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPAD-NSMLIIA-EVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|325299672|ref|YP_004259589.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides salanitronis DSM 18170] gi|324319225|gb|ADY37116.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides salanitronis DSM 18170] Length = 199 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 111/204 (54%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG + + ++D GV Y I + T S + GK LF+ +R+D Sbjct: 1 MIEYIKGELAEAAPAFAVVDCNGVGYGINISLNTYSAIQGK--KEVKLFIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F+LL SV G+G A +LS ++ EL I N K++ + GI +K Sbjct: 59 LYGFSTKQERELFLLLISVPGIGGNTARMILSALSPRELCNVISTGNDKLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LK K S ++++ S V+ +H + + A++ALV LG+ Q + Sbjct: 119 TAQRIIVDLKDKIASTG--IEEEASTVSS-LSHTVNTEIYE-EAVAALVMLGFAQAPSQK 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV S+LK E + A + ++I+LAL+ Sbjct: 175 AVASILKAEPDAAVE-RVIKLALK 197 >gi|261378519|ref|ZP_05983092.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685] gi|269145069|gb|EEZ71487.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685] Length = 194 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ +F + +R+D L Sbjct: 1 MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFYNLPPLGETVQVFTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK I + V + E + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLI--THTVTDGLFATPSENDETNDI-------VSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + K D + +RLAL+ Sbjct: 172 VKGIPKG----TDVGEGVRLALK 190 >gi|299144015|ref|ZP_07037095.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518500|gb|EFI42239.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 198 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 116/211 (54%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIY---CPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 MI IKG I L ++Y++I+ YI+Y I L + ++ + L + R+D Sbjct: 1 MIDYIKGIISELLDNYIVIENNFKGYIVYMSQSDIEQLEIMQEVKIYTRLII----REDN 56 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + L+GF++ R+ F LL SV VG + +MG+LS ++A++++ +I+ +NSK + PGI Sbjct: 57 MTLYGFVNKDSRKLFDLLTSVTSVGPKASMGILSTLSASQIIVAILDENSKALTSSPGIG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVN---KEQAHICSMPSFAINAISALVNLGYGQ 174 K A RI+ ELK K + + D+ + KE+ I A+ AL++LGY + Sbjct: 117 KKTADRIVLELKDKVSKYNFETRFDVKELKNSLKEEIDISP-------AVEALISLGYNK 169 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A A+ + ++N D S++I+ AL+ + Sbjct: 170 YEAKKALTGI---DENF-DVSKMIKEALKRL 196 >gi|46445654|ref|YP_007019.1| Holliday junction DNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|81627839|sp|Q6MFA5|RUVA_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46399295|emb|CAF22744.1| probable Holliday junction DNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 201 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 108/205 (52%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + ++DV GV Y+++ P R L L +IG+ + +R+ L Sbjct: 1 MFAYIKGVLAFFNPSQAIVDVHGVGYLLFIPCRLLGQLPQIGEPVQFYTTYVVREFSHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R F +L +V G+G ++A+ ++ ++ +EL +++ Q+ + ++PG+ K Sbjct: 61 YGFLSYQERDIFEILMNVTGIGPKMALSLIGHLSMSELQIAVMRQDLSTLCRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + D + S+ +A+ AL+NLGY Q A A Sbjct: 121 AERLIVELKDKLAAIGHLDTSDHIEPLTQDPKSKSVQ----DAMLALINLGYNQTTAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +K+ D +Q+I +AL+ + Sbjct: 177 IKQGMKELPEEIDLAQLITVALKHV 201 >gi|189424313|ref|YP_001951490.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ] gi|229560034|sp|B3E790|RUVA_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189420572|gb|ACD94970.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ] Length = 200 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 9/178 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D+V++DV GV Y + P T L + G TL + T +R+D I L Sbjct: 1 MIALLTGQIAHKSPDHVILDVHGVGYRVMIPFSTYYELPEEGQ-ATLHIHTSVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ +F LL SV G+G ++A +LS I +L ++ + ++ IPGI K Sbjct: 60 YGFRTRTEKSFFQLLISVSGIGPKLARDILSNIQPPQLAAALQQGDLHKLSAIPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQ 176 A R++ ELK KA L D + A S+P+ ++ + SALVNLGY Q Sbjct: 120 AERLVLELKDKAGKL------DSGSIPAGDAVGRSLPAGSVLDDVSSALVNLGYKDPQ 171 >gi|261400495|ref|ZP_05986620.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC 23970] gi|269209755|gb|EEZ76210.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC 23970] Length = 194 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K AD + +RLAL+ Sbjct: 164 SEREAKAAVKGVPKG----ADVGEGVRLALK 190 >gi|253681607|ref|ZP_04862404.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str. 1873] gi|253561319|gb|EES90771.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str. 1873] Length = 197 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 100/184 (54%), Gaps = 6/184 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG L +DY++++ + Y IY T+S + I + +++E +R+D + + Sbjct: 1 MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMSNMPNINEEVKIYIEQIVREDFMGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F LL ++ GVG++ A+ +LS + L +SI+ ++ K++ + PGI KI Sbjct: 61 YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVSNLKKSILSEDYKMLTKAPGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + +D+ ++K ++ AL+ LG+ Q +A A Sbjct: 121 AQRITLELKDKIEKIYEDNLEDIDNLSKNSTRKYD------ESLEALIALGFSQKEAEKA 174 Query: 181 VVSV 184 + V Sbjct: 175 LKDV 178 >gi|311104199|ref|YP_003977052.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8] gi|310758888|gb|ADP14337.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8] Length = 190 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +DV G+ Y I P+ TL L G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKLPPTICVDVGGLGYDIDVPMSTLYSLPDTGARVTLYTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ +L ++I LQ S + ++PGI K Sbjct: 61 YGFASAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK L + + Q+ I ++AL+ LGY + ++ +A Sbjct: 121 AERLLLEMRGK---LGADIGASPHAAPDNQSDI----------LNALLALGYSEKESLSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L + ++D I+ AL+A+ Sbjct: 168 -LKTLPEGVGVSDG---IKQALKAL 188 >gi|197119680|ref|YP_002140107.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem] gi|226698732|sp|B5EAH2|RUVA_GEOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|197089040|gb|ACH40311.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem] Length = 199 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 11/197 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++++DV GV Y ++ P T L G +L + T +++D I L Sbjct: 1 MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPVEGGALSLQIHTSVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL V GVG ++A G+LS +EL +S++ N ++ IPGI K Sbjct: 61 YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L Q + I + +SAL+NLGY + A Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGTTAPAKQEIRD------DVLSALINLGYKE-----A 169 Query: 181 VVSVLKKEKNIADDSQI 197 VV E + +D+ + Sbjct: 170 VVQKALAELKVTEDATV 186 >gi|269837708|ref|YP_003319936.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM 20745] gi|269786971|gb|ACZ39114.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM 20745] Length = 193 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 75/131 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I Y VLID+ G+ + T+ LG++GD L+ +R+D I L Sbjct: 1 MISGVRGPIHAKYPGIVLIDLHGLIIRVLTSQTTVDDLGEVGDHAELYTHLRVREDDITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + Q F LL SV GVG RVA+ +LS E+ I ++ ++++PGI K Sbjct: 61 YGFSTPEELQLFELLTSVTGVGPRVALNILSSARPEEVHRVIESEDIAALSRVPGIGKKT 120 Query: 121 ASRIMTELKGK 131 ASRI+ EL+GK Sbjct: 121 ASRIILELRGK 131 >gi|262037466|ref|ZP_06010926.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii F0264] gi|261748501|gb|EEY35880.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii F0264] Length = 213 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 73/122 (59%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 DYV +D+ G+ Y I+ ++T LG+ G L+V TH+++D I +GF ++ +R+ F Sbjct: 15 DYVALDINGLAYKIFISLKTFEALGETGQDEKLYVHTHVKEDDISFYGFKTENERELFKA 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L S GVG ++ + +LS +++ +I NSK+ ++PG+ K A +I+ +LK K Sbjct: 75 LISTSGVGPKLGLAILSTYNVKDVINIVIESNSKLFTKVPGLGDKKAQKIILDLKDKVKK 134 Query: 135 LS 136 L+ Sbjct: 135 LN 136 >gi|255325096|ref|ZP_05366202.1| holliday junction DNA helicase RuvA [Corynebacterium tuberculostearicum SK141] gi|255297661|gb|EET76972.1| holliday junction DNA helicase RuvA [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +ID GV Y +TL L + G+ T+ +++D + L Sbjct: 1 MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGAEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179 A R+ ELK K ++ + + + I + +++ ALV LG+ D+ Sbjct: 120 AQRLALELKDK---VAGFAPSEPAAAGSVETAIAPAGGAVVESVTEALVGLGF-TDKGAR 175 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 VV E D S ++R AL Sbjct: 176 PVVESAYAENPDVDTSSLLRAAL 198 >gi|325205349|gb|ADZ00802.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M04-240196] Length = 194 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190 >gi|258512078|ref|YP_003185512.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478804|gb|ACV59123.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 208 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 108/193 (55%), Gaps = 7/193 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L YV +DV+ V Y ++ RT + L +GD L+ H+R+D L Sbjct: 1 MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAAL-NLGDTAFLYTHHHVREDGWAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G ++A+ V+ E+V +I+ ++++ ++++PGI K+ Sbjct: 60 YGFETIEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDAESLSRLPGIGRKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASR++ EL+ K L+ + + + Q S A +A+SALV LGY +A A Sbjct: 120 ASRLVVELREKLDDLAPAALRAPAPASSPQG------SAAEDAVSALVALGYRPREAEEA 173 Query: 181 VVSVLKKEKNIAD 193 V +V + +++ D Sbjct: 174 VSAVGRGRQSVED 186 >gi|253997451|ref|YP_003049515.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8] gi|253984130|gb|ACT48988.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8] Length = 192 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +LID GV Y P+ T L IGD + +R+D L Sbjct: 1 MIGRLSGTLLEKTPPLILIDCNGVGYECEVPMSTFYNLPAIGDKVVMLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GA+ A+ +LS ++ +LV+++ LQ ++ ++PG+ K Sbjct: 61 YGFGTSQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVALQEPSMLTRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ V + +N+ Q S + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKDK-FTIDGV-----AAMNEPQTK-----SATSDVLNALLALGYNEREA-VA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +L KE ++ D I+ AL+ +S Sbjct: 169 AVKLLDKEISVTDG---IKQALKLLS 191 >gi|150016408|ref|YP_001308662.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB 8052] gi|189045748|sp|A6LTM6|RUVA_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149902873|gb|ABR33706.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB 8052] Length = 198 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 15/204 (7%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG G+ +DYV+++ G+ Y I+ T+S + K G+ L++E +R+D I L+GF Sbjct: 5 IKGKYIGINKDYVIVENSGIGYKIFTSGATMSSMPKNGEEIMLYLEQIVREDFIGLYGFD 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S + + F LL +V GVG + A+ +LS L +I++ + K I + GI K A+RI Sbjct: 65 SKEELEMFKLLLTVSGVGPKAALSLLSISRVNNLKYAIMIGDEKHICRGVGIGKKTAARI 124 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + E+K K + +V + K+ ++ ++ A+SAL+ LGY + +A SV Sbjct: 125 ILEIKDK-LKPDELVDSSLEIDTKDNENVMALSE----ALSALIALGYSEKEAE----SV 175 Query: 185 LKK-EKNIADDS--QIIRLALRAI 205 LKK +KN DS II+ AL+A+ Sbjct: 176 LKKIDKN---DSVENIIKNALKAL 196 >gi|255281765|ref|ZP_05346320.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM 14469] gi|255267832|gb|EET61037.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM 14469] Length = 202 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + E+ +I+ G+ + +Y R L + G L+ +R+D I+L Sbjct: 1 MIAFIKGTLVEAAENVAVIENNGIGFNVYITGRDAGQLVRGGMEVLLYTYMDVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F +L V G+G + A GVL+ I+A EL +++ + K I+ PGI K Sbjct: 61 YGFLSKDDLEIFRMLLKVNGIGPKAAQGVLTAISANELRFAVLADDIKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179 A +++ ELK K SL +Q ++ + A + P+ A+ ALV LGY A Sbjct: 121 AQKLILELKDK-FSLQDTFEQKLA---ENTAAAAAAPNETQSEAVQALVALGYAGSDALK 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV +V E +D I+R AL+ IS Sbjct: 177 AVKAVHATEDMSTED--ILRAALKHIS 201 >gi|53720506|ref|YP_109492.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei K96243] gi|53726199|ref|YP_103912.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 23344] gi|67642316|ref|ZP_00441074.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse 4] gi|76809765|ref|YP_334777.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710b] gi|121600711|ref|YP_991618.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1] gi|124384917|ref|YP_001027114.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10229] gi|126438536|ref|YP_001060376.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668] gi|126450738|ref|YP_001082059.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10247] gi|126453529|ref|YP_001067637.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 1106a] gi|134280414|ref|ZP_01767125.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305] gi|167000504|ref|ZP_02266316.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20] gi|167721174|ref|ZP_02404410.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei DM98] gi|167740150|ref|ZP_02412924.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 14] gi|167817363|ref|ZP_02449043.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 91] gi|167825771|ref|ZP_02457242.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 9] gi|167895840|ref|ZP_02483242.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 7894] gi|167904231|ref|ZP_02491436.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei NCTC 13177] gi|167912490|ref|ZP_02499581.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 112] gi|167920442|ref|ZP_02507533.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei BCC215] gi|217421175|ref|ZP_03452680.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576] gi|226198378|ref|ZP_03793947.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pakistan 9] gi|237813764|ref|YP_002898215.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei MSHR346] gi|242317479|ref|ZP_04816495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1106b] gi|254178754|ref|ZP_04885408.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 10399] gi|254180688|ref|ZP_04887286.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1655] gi|254191517|ref|ZP_04898020.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pasteur 52237] gi|254194815|ref|ZP_04901245.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13] gi|254202624|ref|ZP_04908987.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH] gi|254207963|ref|ZP_04914313.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU] gi|254260441|ref|ZP_04951495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710a] gi|254299226|ref|ZP_04966676.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 406e] gi|254355897|ref|ZP_04972175.1| Holliday junction DNA helicase RuvA [Burkholderia mallei 2002721280] gi|81379105|sp|Q63QX6|RUVA_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81604343|sp|Q62HA8|RUVA_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90134634|sp|Q3JNS6|RUVA_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230525|sp|A3MP73|RUVA_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230526|sp|A2S595|RUVA_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230527|sp|A1V065|RUVA_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230528|sp|A3NZ66|RUVA_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230529|sp|A3NDF5|RUVA_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52210920|emb|CAH36908.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243] gi|52429622|gb|AAU50215.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 23344] gi|76579218|gb|ABA48693.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710b] gi|121229521|gb|ABM52039.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1] gi|124292937|gb|ABN02206.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10229] gi|126218029|gb|ABN81535.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668] gi|126227171|gb|ABN90711.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1106a] gi|126243608|gb|ABO06701.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10247] gi|134248421|gb|EBA48504.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305] gi|147746871|gb|EDK53948.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH] gi|147751857|gb|EDK58924.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU] gi|148024872|gb|EDK83050.1| Holliday junction DNA helicase RuvA [Burkholderia mallei 2002721280] gi|157808883|gb|EDO86053.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 406e] gi|157939188|gb|EDO94858.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pasteur 52237] gi|160694668|gb|EDP84676.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 10399] gi|169651564|gb|EDS84257.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13] gi|184211227|gb|EDU08270.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1655] gi|217396587|gb|EEC36604.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576] gi|225929561|gb|EEH25579.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pakistan 9] gi|237505707|gb|ACQ98025.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei MSHR346] gi|238523444|gb|EEP86882.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse 4] gi|242140718|gb|EES27120.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1106b] gi|243063559|gb|EES45745.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20] gi|254219130|gb|EET08514.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710a] Length = 193 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPPERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++ALV LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLGPL----AGAASPSDHATDILNALVALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+L+L+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191 >gi|59802051|ref|YP_208763.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae FA 1090] gi|194099623|ref|YP_002002754.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae NCCP11945] gi|239999822|ref|ZP_04719746.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae 35/02] gi|240014978|ref|ZP_04721891.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI18] gi|240116581|ref|ZP_04730643.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID18] gi|240118805|ref|ZP_04732867.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID1] gi|240122047|ref|ZP_04735009.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID24-1] gi|240124344|ref|ZP_04737300.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID332] gi|254494604|ref|ZP_05107775.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 1291] gi|260439658|ref|ZP_05793474.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI2] gi|268595632|ref|ZP_06129799.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 35/02] gi|268602250|ref|ZP_06136417.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID18] gi|268604516|ref|ZP_06138683.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID1] gi|268682971|ref|ZP_06149833.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID332] gi|291042899|ref|ZP_06568640.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae DGI2] gi|293398091|ref|ZP_06642296.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62] gi|75355491|sp|Q5F636|RUVA_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560109|sp|B4RPG0|RUVA_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|59718946|gb|AAW90351.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA 1090] gi|193934913|gb|ACF30737.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae NCCP11945] gi|226513644|gb|EEH62989.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 1291] gi|268549021|gb|EEZ44439.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 35/02] gi|268586381|gb|EEZ51057.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID18] gi|268588647|gb|EEZ53323.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID1] gi|268623255|gb|EEZ55655.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID332] gi|291013333|gb|EFE05299.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae DGI2] gi|291611354|gb|EFF40424.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62] gi|317165112|gb|ADV08653.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae TCDC-NG08107] Length = 194 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAASPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K D + +RLAL+ Sbjct: 164 NEREAKAAVKGVPKG----TDVGEGVRLALK 190 >gi|300858594|ref|YP_003783577.1| holliday junction resolvasome helicase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|300686048|gb|ADK28970.1| Holliday junction resolvasome helicase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|302206306|gb|ADL10648.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium pseudotuberculosis C231] gi|302330863|gb|ADL21057.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium pseudotuberculosis 1002] gi|308276548|gb|ADO26447.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium pseudotuberculosis I19] Length = 203 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G + + +I+ GV Y + TLS + + +F FV T M R+D Sbjct: 1 MIVSLRGTVASIGLGSAVIECNGVGYEVLASPSTLSQMRRGEEF---FVLTTMVVREDSQ 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF SD RQ F LLQ+V G+G ++A+ S ++A +L ++I Q++K + +IPG+ Sbjct: 58 TLYGFASDEARQMFTLLQTVSGLGPKLALAAQSVLSAVDLAQAIANQDAKTLQRIPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 ++A RI+ +LK K S D + + + AL+ LG+ + A Sbjct: 118 RVAERIIVDLKDKV----SAFITDGGATPASGGSSSATSDVSAQVLEALLGLGFTEKVAE 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ SVL + N A SQ +RLAL + Sbjct: 174 PALNSVLSESPN-ATTSQALRLALSTL 199 >gi|331091226|ref|ZP_08340067.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404673|gb|EGG84212.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 2_1_46FAA] Length = 201 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 113/205 (55%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + E+ +IDV GV Y I+ P +++ L + + L H+++D ++L Sbjct: 1 MISYIRGELVAVEEEKAVIDVGGVGYGIFMPAQSMGKLPPLHEEVRLHTYLHVKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F L+ V G+G + A+ +LS ++A +L +++ + K I+ GI K Sbjct: 61 YGFLTRDDLKVFKLVIGVSGIGPKGALNILSNLSADDLRFAVLSNDVKAISAAQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A +++ ELK K +S+ V++ V +E+ + S A+ ALV LGYG ++ Sbjct: 121 AEKLIIELKDK-LSMDDVLEH---MVQEEEVAVTGQNSGVQAEAVQALVALGYGNTESLR 176 Query: 180 AVVSVLKKEKNIADDSQ-IIRLALR 203 AV V E N D + +++ ALR Sbjct: 177 AVRRV---EVNADSDVETVLKQALR 198 >gi|283457993|ref|YP_003362600.1| holliday junction resolvasome, DNA-binding subunit [Rothia mucilaginosa DY-18] gi|283134015|dbj|BAI64780.1| holliday junction resolvasome, DNA-binding subunit [Rothia mucilaginosa DY-18] Length = 209 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +IDV G +++ RTLS L + G+ T+ +R++ + L Sbjct: 4 MIASLTGRVAQVGLDHAVIDVNGFGMLVHATARTLSKL-RTGEEATVLTTMIVREESMTL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TA E+ ++ + K ++PGI K Sbjct: 63 YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S ++ + + + AL +LG+ + A+ A Sbjct: 123 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +K N + +S+ + +ALR + Sbjct: 174 IDAYVK--HNPSAESEPVGVALRGV 196 >gi|240017426|ref|ZP_04723966.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA6140] gi|240081568|ref|ZP_04726111.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA19] gi|240113847|ref|ZP_04728337.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae MS11] gi|240126556|ref|ZP_04739442.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae SK-92-679] gi|240129018|ref|ZP_04741679.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae SK-93-1035] gi|268597664|ref|ZP_06131831.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae FA19] gi|268599915|ref|ZP_06134082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae MS11] gi|268685136|ref|ZP_06151998.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-92-679] gi|268687398|ref|ZP_06154260.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-93-1035] gi|268551452|gb|EEZ46471.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae FA19] gi|268584046|gb|EEZ48722.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae MS11] gi|268625420|gb|EEZ57820.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-92-679] gi|268627682|gb|EEZ60082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-93-1035] Length = 194 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDRLFAASPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K D + +RLAL+ Sbjct: 164 NEREAKAAVKGVPKG----TDVGEGVRLALK 190 >gi|300856546|ref|YP_003781530.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436661|gb|ADK16428.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] Length = 198 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 110/201 (54%), Gaps = 13/201 (6%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG +G+ +DY++++ G+ Y I T++ K+G+ L+++ +R+D I L+GFL Sbjct: 5 IKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKVGENIVLYLQQIVREDFIGLYGFL 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + F LL ++ G+GAR A+ +LS L +II ++ K + + PGI K A RI Sbjct: 65 TKEELSMFNLLLTINGIGARAALSILSISDVNNLKYAIISEDEKNLVRAPGIGKKTAQRI 124 Query: 125 MTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 + ELK K I + + + D+ +N Q + AL+ LGY + + A+ Sbjct: 125 ILELKDK-IDVGELTNSEDDIDNINATQN--------TSEVLEALIALGYSEKEGNKALA 175 Query: 183 SVLKKEKNIADDSQIIRLALR 203 S+ K +++ +D +I+ AL+ Sbjct: 176 SIDKTKESSTED--MIKKALK 194 >gi|308070380|ref|YP_003871985.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681] gi|305859659|gb|ADM71447.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681] Length = 204 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 5/198 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ L +YV++DVQGV Y ++CP K +++ H+R+D I L Sbjct: 1 MIDFLRGSVAHLENEYVVLDVQGVGYRVFCP--NPYAFAKTEGPVVIYIHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q F L V G+G RVA+G+L T +V +I +N + ++PGI K Sbjct: 59 FGFATRDEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S+ + + E S+ A AL LGY D Sbjct: 119 AQRMILDLKDKLDGIGSLGMA--TGLFAEPVVEEGEGSYWGEAREALKALGY-TDAELDK 175 Query: 181 VVSVLKKEKNIADDSQII 198 V S +KK+ + + I+ Sbjct: 176 VWSRMKKDAKPDESADIL 193 >gi|325274574|ref|ZP_08140632.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51] gi|324100301|gb|EGB98089.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51] Length = 205 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK KA S + + V+ S S +AISALV+LGY +A+ Sbjct: 121 AERLLVELKDRFKAWETSPAM---FTLVSDGPLPAASASSAEADAISALVSLGYKPQEAS 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ ++ K+K ++IR +L+ + Sbjct: 178 KAIAAI--KDKAGLSSEELIRRSLKGM 202 >gi|91793239|ref|YP_562890.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans OS217] gi|122968746|sp|Q12N09|RUVA_SHEDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91715241|gb|ABE55167.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans OS217] Length = 203 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +++DV GV Y + P+ + L ++ TL+ +R+D L Sbjct: 1 MIGRLNGILVEKHAPEIVLDVGGVGYELQVPMTSFYELPELEQSATLYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVSCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K SL + + + + +AISALV+LGY QA+ A Sbjct: 121 AERLVVEMRDKLKSLLEASVGNEREFMLQTNYTAPAANAEEDAISALVSLGYKPPQASRA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K K D +I+LAL+++ Sbjct: 181 VS---KAYKEGMDTETLIKLALKSM 202 >gi|148977429|ref|ZP_01814029.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium SWAT-3] gi|145963381|gb|EDK28646.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium SWAT-3] Length = 203 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 113/208 (54%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177 A R++ E+K + L D+ + A I SMP+ A+SAL+ LGY QA Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSMPTVHDAEEEAVSALLALGYKPTQA 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS + KE ++ Q+IR AL+++ Sbjct: 178 SK-VVSQVAKEGMTSE--QLIRDALKSM 202 >gi|56477680|ref|YP_159269.1| Holliday junction DNA helicase RuvA [Aromatoleum aromaticum EbN1] gi|81357290|sp|Q5P2U6|RUVA_AZOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56313723|emb|CAI08368.1| Holliday junction DNA helicase [Aromatoleum aromaticum EbN1] Length = 199 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 15/209 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +++D GV Y I P+ T L G+ +LF +R+D L Sbjct: 1 MIGRITGILLEKNPPQIVVDTHGVGYEIDVPMSTFYGLPATGESLSLFTHLAIREDGHFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ ++L +++ LQ + + +IPGI K Sbjct: 61 YGFASADERAAFRQLLKVSGIGARTALSVLSGLSVSDLAQAVALQETGRLVKIPGIGKKT 120 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL+ G+A+ S V A S +N AL+ LGY +A Sbjct: 121 AERLLLELRDKLGRALPGFGA-----STVPGAAAQPADSRSDILN---ALLALGYSDKEA 172 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A+ ++ E ++D IR AL+ +S Sbjct: 173 QSALKAI-PPETGVSDG---IRQALKLLS 197 >gi|304320107|ref|YP_003853750.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis HTCC2503] gi|303299010|gb|ADM08609.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis HTCC2503] Length = 202 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 4/194 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L + +IDV GV Y + R LS L + G L ET + + IRL Sbjct: 1 MIAALHGTVSVLSGENAIIDVNGVGYEVAATPRLLSSLAQ-GQEVRLITETLVAETYIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F + +R F LLQ+VQGVGA+ A+ +LS +T +L +++ + ++A+ G+ K+ Sbjct: 60 VAFQTIEERLTFRLLQTVQGVGAKAALAILSALTPADLFDAVEAGDKAMVARAQGVGPKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELKGK +V + + ++ S A +A++ALV LG+ A Sbjct: 120 ALRIVTELKGK---CGGIVGAFPAVASPRATSAAAVDSPAEDAVAALVALGFDHGAARRT 176 Query: 181 VVSVLKKEKNIADD 194 + ++ E + +D Sbjct: 177 ISTLPDLETSRTED 190 >gi|291550303|emb|CBL26565.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus torques L2-14] Length = 202 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 1/184 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + E +++ G+ Y IY +TLS L +G+ + ++R+D ++L Sbjct: 1 MISYIRGELAAVQEQKAIVEAGGIGYGIYMSQQTLSMLPAVGEEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D Q F LL V G+G + + +LS ++ EL +++ + K I+ PGI K Sbjct: 61 YGFLTGEDLQVFRLLIGVSGIGPKAGLNILSCLSPDELRFAVLAGDVKTISSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K +S+ V++Q + + + A+ AL LGYG ++ A Sbjct: 121 AEKLILELKDK-MSIEDVLEQAAHGGEQSKEIEATDTGMQAEAVQALTALGYGSAESLRA 179 Query: 181 VVSV 184 V V Sbjct: 180 VKKV 183 >gi|312129386|ref|YP_003996726.1| holliday junction DNA helicase subunit ruva [Leadbetterella byssophila DSM 17132] gi|311905932|gb|ADQ16373.1| Holliday junction DNA helicase subunit RuvA [Leadbetterella byssophila DSM 17132] Length = 191 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 107/203 (52%), Gaps = 12/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +IDVQGV Y++ ++T + L +G+ C LF +R+D L Sbjct: 1 MIAHLNGILSEKEPAQAVIDVQGVGYLLKISLQTSAALPAVGEKCKLFCLQIIREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV G+G +A+ LS +T E+V++I+ ++ K I I GI +K Sbjct: 61 YGFATREERVLFEHLISVSGIGPAIALVFLSSMTGPEIVQAIVSEDVKTIQGIKGIGLKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + ELK K + ++ M+ A I + A++ALV LG + A + Sbjct: 121 AQRAVIELKDK------LKKEPMATTGTLPARI------RMEALAALVTLGIPKATAEKS 168 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++LK+ ++I+L+LR Sbjct: 169 VDNILKRAPADITLEEVIKLSLR 191 >gi|162448567|ref|YP_001610934.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56'] gi|161159149|emb|CAN90454.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56'] Length = 244 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 26/198 (13%) Query: 1 MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPI------RTLSCLGKIG-DFCTLFVET 51 +IG++ G++ EG E V++DV GV Y + P+ R ++ K G D TLFV T Sbjct: 37 LIGRLSGHVVEEG-DEGTVVLDVSGVGYEVTVPLGAVGRARGIAANAKAGSDAITLFVHT 95 Query: 52 HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 H+R+D + L+GF + DR F +L + +G ++AM +LS + A EL I + + + Sbjct: 96 HVREDALLLYGFATREDRAAFRVLIGISSIGPKIAMAILSALGAGELAAVITRRETARLT 155 Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-----SA 166 IPG+ K A R++ ELK K + L + + P A A SA Sbjct: 156 AIPGVGKKTAERLVLELKDKLVHLPAAPLSPAAS-----------PPVATGAKQDLLHSA 204 Query: 167 LVNLGYGQDQATTAVVSV 184 L +GY +A AV ++ Sbjct: 205 LTRMGYRPAEAERAVTAL 222 >gi|315634723|ref|ZP_07890007.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter segnis ATCC 33393] gi|315476671|gb|EFU67419.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter segnis ATCC 33393] Length = 204 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQGV Y + P+ + L ++G +LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYHLPEVGKQTSLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-----NAISALVNLGYGQD 175 A R++ ELKGK V D + + SM + A A++AL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKNNDF-FMQADHLPSLSMETIATAEPSNEAVAALIALGYKPV 176 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 A V V K Q+IR AL+A Sbjct: 177 DAEKMVKKV---SKPALSSEQLIREALKA 202 >gi|238924017|ref|YP_002937533.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium rectale ATCC 33656] gi|238875692|gb|ACR75399.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium rectale ATCC 33656] Length = 205 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + D ++++ GV Y+IY P + L G+ ++ +R+D + L Sbjct: 4 MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + + +LS + A +L +I+ +SK I++ PGI K Sbjct: 64 YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A R++ +LK K +SL ++ + N+ SM S N A+ AL LGY ++ Sbjct: 124 AQRVILDLKDK-LSLEDAFEKKLE--NQASGAAVSMNSTVKNDAVMALNALGYSSTESLK 180 Query: 180 AVVSV-LKKEKNIADDSQIIRLALR 203 AV V + ++ ++ D +++LAL+ Sbjct: 181 AVSKVDITEDMDVED---VLKLALK 202 >gi|291524757|emb|CBK90344.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale DSM 17629] gi|291528922|emb|CBK94508.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale M104/1] Length = 205 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + D ++++ GV Y+IY P + L G+ ++ +R+D + L Sbjct: 4 MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + + +LS + A +L +I+ +SK I++ PGI K Sbjct: 64 YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A R++ +LK K +SL ++ + N+ SM S N A+ AL LGY ++ Sbjct: 124 AQRVILDLKDK-LSLEDAFEKKLE--NQTSGAAVSMNSTVKNDAVMALNALGYSSTESLK 180 Query: 180 AVVSV-LKKEKNIADDSQIIRLALR 203 AV V + ++ ++ D +++LAL+ Sbjct: 181 AVSKVDITEDMDVED---VLKLALK 202 >gi|326575817|gb|EGE25740.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis CO72] Length = 204 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + C IG ++V H+R+D I Sbjct: 1 MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSF-CQLTIGAQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKG+ + + + A SM A SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGQLNEFGEMHPMTAEGLFNQPAD-NSMLIIA-EVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|94309369|ref|YP_582579.1| Holliday junction DNA helicase RuvA [Cupriavidus metallidurans CH34] gi|123384032|sp|Q1LRB6|RUVA_RALME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|93353221|gb|ABF07310.1| component of RuvABC resolvasome, regulatory subunit [Cupriavidus metallidurans CH34] Length = 193 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L IG TL + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAIGHPVTLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + GVGAR+A+ VLS ++ EL +++ +Q + + +IPGI K Sbjct: 61 FGFATATERNTFRELIKITGVGARMALAVLSGLSVPELAQAVTMQEAGRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A++ ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLG----HAPGATPLADSAVDILNALLALGYSEKEAAQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V ++D I+LAL+A+S Sbjct: 170 IKQV-PAGTGVSDG---IKLALKALS 191 >gi|119774975|ref|YP_927715.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B] gi|166200259|sp|A1S6N9|RUVA_SHEAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119767475|gb|ABM00046.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B] Length = 205 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 113/211 (53%), Gaps = 13/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + + VLIDV GV Y + P+ + L G ++ +R+D L Sbjct: 1 MIGRLKGILVEKHAPEVLIDVGGVGYELQMPLTSFYELPLPGAEVIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F LL GVG ++A+ +LS +TA E + + + + ++PG+ K Sbjct: 61 YGFIHKEERSLFRLLIKANGVGPKLALTILSGMTAKEFIGCLERDDIATLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAI---NAISALVNLGYGQ 174 A R++ E++ K L S+++ M +E +++ P A +AI+AL++LGY Sbjct: 121 AERLLVEMRDK---LKSLMEASMGA-EREFVLKSNFTPAPVAATVEEDAIAALLSLGYKP 176 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ AV S ++ D Q+I+ AL+++ Sbjct: 177 QQASKAVSSAFQEG---MDPEQLIKAALKSM 204 >gi|229825022|ref|ZP_04451091.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC 49176] gi|229790769|gb|EEP26883.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC 49176] Length = 204 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 108/204 (52%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG +EG+ + V+IDV G+ P ++ L KI + L H+R+D ++L Sbjct: 1 MIASVKGKLEGVTTESVIIDVNGLGVEAIVPTTVINLLPKIDENIKLHTYLHVREDVMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL D +F LL +V G+G + A+ +LS + L +I+ +++K I + GI K Sbjct: 61 YGFLEKEDLDFFKLLITVNGIGPKAAIAILSSMPTDILTFAILSEDTKTIQKAQGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A +++ ELK K + + Q S + A + S A+ L LGY Q +A Sbjct: 121 AKKLVLELKDK-VGIIKTPQNTGSEIYDNAALTIGINSEIKDEAVQVLTALGYSQTEAVK 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 A+ +V E+ ++ ++++L+L+ Sbjct: 180 AISTVEMYEEMTSE--ELVKLSLK 201 >gi|167629898|ref|YP_001680397.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum Ice1] gi|167592638|gb|ABZ84386.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum Ice1] Length = 274 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 80/131 (61%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + GL +D +L+DV GV Y ++ P L+ L ++G + + R+DQ+ L Sbjct: 1 MIAFLRGRLVGLGDDCLLLDVSGVGYRVFVPATMLASLPQVGRDILIHTFYYAREDQVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ + +F LL V GVG +V +G+LS + E+ +II ++ + +IPGI K Sbjct: 61 YGFLTEEELAFFRLLLEVSGVGPKVGLGILSAYSVVEVQRAIIAEDVLALTRIPGIGRKT 120 Query: 121 ASRIMTELKGK 131 A R++ EL+ K Sbjct: 121 AQRLVIELRDK 131 >gi|322514922|ref|ZP_08067937.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus ureae ATCC 25976] gi|322119110|gb|EFX91264.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus ureae ATCC 25976] Length = 201 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 99/210 (47%), Gaps = 17/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IP I K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPSIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM------PSFAINAISALVNLGYGQ 174 A R++ ELKGK V Q D + H M A A ALV LGY Sbjct: 121 AERLLVELKGK---FKGVAQSDFF-----EEHSVEMIVATHSHDPADEAQDALVALGYKL 172 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A + V K A Q+IR AL+A Sbjct: 173 ADADKMIKKV---NKAGATSEQLIREALKA 199 >gi|212212080|ref|YP_002303016.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuG_Q212] gi|226698728|sp|B6IYU3|RUVA_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212010490|gb|ACJ17871.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212] Length = 200 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G I Y+L++V GV Y I P+ T L + + L+ +R+D L Sbjct: 1 MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+ F L V GVG ++A+ +LS I E V ++ QN + +IPG+ K Sbjct: 61 YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E K + LS D ++ S +AISAL+ LGY +A A Sbjct: 121 AERLVIETKDR---LSRWHTNDTPSPEGLRS---SNTQPTQDAISALMALGYKPQEAKRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + ++ K + + +IRLAL+ Sbjct: 175 IDAIQKPDLSA---ETLIRLALK 194 >gi|325203380|gb|ADY98833.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240355] Length = 194 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190 >gi|313669264|ref|YP_004049548.1| Holliday junction DNA helicase [Neisseria lactamica ST-640] gi|313006726|emb|CBN88196.1| Holliday junction DNA helicase [Neisseria lactamica 020-06] Length = 194 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + V + E + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLV--AHTVTDGLFAAPSENDETNDI-------VGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V K D + +RLAL+ Sbjct: 172 VKGVPKG----TDVGEGVRLALK 190 >gi|320539865|ref|ZP_08039524.1| component of RuvABC resolvasome, regulatory subunit [Serratia symbiotica str. Tucson] gi|320030051|gb|EFW12071.1| component of RuvABC resolvasome, regulatory subunit [Serratia symbiotica str. Tucson] Length = 204 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 20/213 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VL++ GV Y +Y P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLLEANGVGYEVYMPMTCFYQLPELGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEHEEITTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI---------NAISALVNLG 171 A R++ E+K + L+ + + S S+P+ A+ A+SALV LG Sbjct: 121 AERLVVEMKDRFKGLNGDLFTNSSG--------SSLPATAVQTADNDTEAEAVSALVALG 172 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 Y +A+ V + K+ AD +IR ALRA Sbjct: 173 YKPQEASRMVSKI---AKSGADCETLIRDALRA 202 >gi|313202065|ref|YP_004040723.1| holliday junction DNA helicase ruva [Methylovorus sp. MP688] gi|312441381|gb|ADQ85487.1| Holliday junction DNA helicase RuvA [Methylovorus sp. MP688] Length = 192 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + V+ID GV Y P+ T L +G+ L + +R+D L Sbjct: 1 MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +RQ F L V G+GA+ A+ +LS ++ +L +++ LQ + ++ ++PGI K Sbjct: 61 YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK D V+ A S + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELK------------DKFSVDGLAAPAGQAKSASGDVLNALLALGYNEREAMAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L + +AD IRLAL+++S Sbjct: 169 VKQ-LPADVVVADG---IRLALKSLS 190 >gi|283796454|ref|ZP_06345607.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1] gi|291075862|gb|EFE13226.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1] Length = 248 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 5/187 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +I I+G + + +++ G+ Y I+ P+ L L +G ++ +R+D + L Sbjct: 42 VISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSL 101 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ DR+ F L V G+G + A+G+L + +L +I+ + K I++ PGI K Sbjct: 102 YGFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKT 161 Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ +LK K + L+SV D E A + + A A+ ALV LGY +A Sbjct: 162 AQRIILDLKDKVSAEEILASVTASDGGAKAPEAASLTA--EAAREAVDALVALGYSNLEA 219 Query: 178 TTAVVSV 184 + AV V Sbjct: 220 SKAVKQV 226 >gi|212635161|ref|YP_002311686.1| Holliday junction DNA helicase RuvA [Shewanella piezotolerans WP3] gi|226725447|sp|B8CNY0|RUVA_SHEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212556645|gb|ACJ29099.1| DNA recombination protein, RuvA [Shewanella piezotolerans WP3] Length = 205 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VLIDV GV Y I P+ + L +IG +F +R+D L Sbjct: 1 MIGRIRGLLVEKQAPEVLIDVSGVGYEIQMPLTSFYELPEIGLEAVVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL GVG ++A+ +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFISKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPVVANTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V + D +I+ AL+++ Sbjct: 181 KAVSAVY---VDGIDSESLIKSALKSM 204 >gi|194333233|ref|YP_002015093.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM 271] gi|229560116|sp|B4S4U8|RUVA_PROA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194311051|gb|ACF45446.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM 271] Length = 200 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D ++DV GV Y + T L GD L H+++D ++L Sbjct: 1 MYAYFRGELISSSRDNAIVDVGGVAYRLLISNSTYRQLPSSGDQVKLLAHLHVKEDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + +RQ F+LL S+ GVG ++A+ +LS + E+ E+I+ + + I G+ K Sbjct: 61 YGFIEEEERQLFLLLLSISGVGPKLALAILSGLPVEEIQEAIMANKPETLFGISGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + L QQ + A S+ S + +A+ AL+ LG+ + A A Sbjct: 121 AARIILELRDRILKL----QQTRPG---KTAGAGSVASLSEDALQALMTLGFSRASAQQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L +N + I+R AL+ I Sbjct: 174 VTRALLSAENPGVED-IVREALQNI 197 >gi|68171608|ref|ZP_00544978.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88658340|ref|YP_507141.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str. Arkansas] gi|123763770|sp|Q2GHE2|RUVA_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67998975|gb|EAM85656.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88599797|gb|ABD45266.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str. Arkansas] Length = 190 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 121/214 (56%), Gaps = 33/214 (15%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58 MIG + G IE +Y +Y++++V V YIIY + L SC K G+ L++ET++ +D + Sbjct: 1 MIGSLTGIIEEIYNNYIILNVGNVGYIIYVSHKVLQSC--KTGNNIKLYIETYVNRDNLT 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GFL ++ + +L ++ G+ + A+ +LS+++ E + S ++ N+K + GI Sbjct: 59 QLYGFLDKQEQDYMRMLVTINGINHKTAISILSKLSP-EQIFSAVVSNNKNAFRGNGIGE 117 Query: 119 KIASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 K+A RI TEL+ K I + ++++D ++++AL++LGY + Sbjct: 118 KLAGRITTELQYKISKMPIEETLIIKED-------------------DSLAALISLGYDK 158 Query: 175 DQATTAVVSVLKKEKNIADDS--QIIRLALRAIS 206 +A A+ + + N DDS +IIR AL+ +S Sbjct: 159 LKAFNAIQEI---KANFPDDSIQEIIRKALQKLS 189 >gi|207727946|ref|YP_002256340.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum MolK2] gi|206591189|emb|CAQ56801.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum MolK2] Length = 193 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ V A M A++ ++AL+ LGY +A A Sbjct: 121 AERLLL-------ELKGKLGADLGAVPGGPA----MSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K+ S+ I+LAL+A+S Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191 >gi|282882990|ref|ZP_06291594.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis 315-B] gi|281297197|gb|EFA89689.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis 315-B] Length = 198 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 116/207 (56%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKGNI +YE +++D + Y+I +S L + + +++ +R+D I L Sbjct: 1 MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKLS-LNEELKIYLRLILREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ R F LL +V VG +++M +L + +++L +I+ +++ ++ + PG+ K Sbjct: 60 YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A+RI+ ELK K S D+S ++ I + P A+ AL++LGY + +A Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP-----ALEALLSLGYNEYEAKI 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ +V + ++ S+IIR AL+ ++ Sbjct: 175 ALRNVDQNQEL----SEIIRQALKVMA 197 >gi|254674127|emb|CBA09911.1| holliday junction DNA helicase [Neisseria meningitidis alpha275] gi|325145258|gb|EGC67537.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240013] Length = 194 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V + D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190 >gi|254000106|ref|YP_003052169.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4] gi|253986785|gb|ACT51642.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4] Length = 192 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + V+ID GV Y P+ T L +G+ L + +R+D L Sbjct: 1 MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +RQ F L V G+GA+ A+ +LS ++ +L +++ LQ + ++ ++PGI K Sbjct: 61 YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK D V+ A S + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELK------------DKFSVDGLTAPAGQPKSASGDVLNALLALGYNEREAMAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L + +AD IRLAL+++S Sbjct: 169 VKQ-LPADVVVADG---IRLALKSLS 190 >gi|193214311|ref|YP_001995510.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC 35110] gi|229560019|sp|B3QVA9|RUVA_CHLT3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193087788|gb|ACF13063.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC 35110] Length = 200 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 111/205 (54%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G + + ++++V GV Y++ T L IG+ + ++R+D ++L Sbjct: 1 MLSYLSGTLIEKFSTEIVVEVNGVGYLLNISATTHEKLPAIGNQIKILTYLYVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ DR+ F LL ++ GVG ++A +LS ++ +L ES+I ++K + I G+ K Sbjct: 61 YGFITTEDREVFKLLIAISGVGPKLAQTILSGMSTAQLRESVIAGDTKALTAIAGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + L D+ KE A +A SAL++LG+ + A A Sbjct: 121 AERIILELKDKLVKL------DLKIDIKETAFRSDKQQVRNDAYSALISLGFTKSIAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + + + D +IR+ALR + Sbjct: 175 MRAAIAEVPDGSVD-DLIRVALRHV 198 >gi|300741595|ref|ZP_07071616.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567] gi|300380780|gb|EFJ77342.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567] Length = 206 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G++ + + ++DV G ++ RTLS L + G TL +R+D + L Sbjct: 1 MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TATE+ ++ + K ++PGI K Sbjct: 60 YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I + + + N I P + AL +LG+ + A A Sbjct: 120 ARRIVLELAGKLI-----LSEGQAEENAPAQGIAWKPQV----MDALTSLGWSEKDADAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + N + + + +ALR + Sbjct: 171 IDAYV--QHNPDAEKEAVGVALRGV 193 >gi|291612984|ref|YP_003523141.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus ES-1] gi|291583096|gb|ADE10754.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus ES-1] Length = 192 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DVQGV Y + P+ T L + + L + +R+D L Sbjct: 1 MIGRLSGTLLEKNPPQIVLDVQGVGYEVDVPMSTFYNLPALHEKVVLHTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R F L + GVG ++A+ VLS ++ +L ++ +++ + +IPG+ K Sbjct: 61 FGFLTHEERVAFRQLLKISGVGPKLALSVLSGLSLADLALAVANKDASRLTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + S+PS + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELQGKFAVAGAGAMA------------GSVPSSSSDIVNALLGLGYNEKEADWA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 L KE +AD IR AL+ +S Sbjct: 169 AKQ-LPKEAGVADG---IRQALKLLS 190 >gi|160889167|ref|ZP_02070170.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492] gi|156861174|gb|EDO54605.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492] Length = 200 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G I L +ID G+ Y + + T + + GK C L++ +R+D Sbjct: 1 MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177 A RI+ +LK K I SVV + + + S + + AI+AL LG+ Q + Sbjct: 119 TAQRIIVDLKDK-IKTGSVVAGNAGTI----GTLVSAANAQVQEEAIAALTMLGFAQAPS 173 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V+++LK+E + A Q+I+LAL+ Sbjct: 174 QKVVLAILKEEPS-APVEQVIKLALK 198 >gi|298242494|ref|ZP_06966301.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM 44963] gi|297555548|gb|EFH89412.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM 44963] Length = 196 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 16/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G ++ + D+V + V G ++ P T+S LG+ G L HMR+D I L Sbjct: 1 MITSIHGILQTCHPDHVTVRVGGFGIQVFAPATTISGLGETGTEVELHTHFHMREDGIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++DR F L +V GVG RVA+ +LS + A L ++I ++ + + G+ ++ Sbjct: 61 YGFATEMDRDAFEQLIAVNGVGPRVALSLLSVMDAPALYKAIADEDQQRLGLAKGVGKRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178 A++++ LKGK L S+V I +PS + AL+ LG+ +A Sbjct: 121 AAQLILALKGK---LPSIVPAGT---------ISGVPSGKLQTEVLEALMGLGFSSAEAQ 168 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + +++ + Q + ALR S Sbjct: 169 AAIAKIPQEQAMTLE--QQVTYALRTFS 194 >gi|304389092|ref|ZP_07371136.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria meningitidis ATCC 13091] gi|304336965|gb|EFM03155.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria meningitidis ATCC 13091] Length = 194 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + + L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVGTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190 >gi|299533018|ref|ZP_07046405.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44] gi|298719242|gb|EFI60212.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44] Length = 191 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L + G+G R+A+ VLS ++ +L +++ Q + + ++PGI K Sbjct: 61 FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + Q + N +Q I + AL+ LGY +A+ A Sbjct: 121 AERLLLELKGKIGADTGA--QSLFANNNDQNDI----------LQALMALGYSDKEASAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LKK S+ I+LAL+A++ Sbjct: 169 ----LKKLPPDVGVSEGIKLALKALT 190 >gi|300813213|ref|ZP_07093581.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512666|gb|EFK39798.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 198 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 116/207 (56%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKGNI +YE +++D + Y+I +S L + + +++ +R+D I L Sbjct: 1 MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKLS-LNEELKIYLRLILREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ R F LL +V VG +++M +L + +++L +I+ +++ ++ + PG+ K Sbjct: 60 YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A+RI+ ELK K S D+S ++ I + P A+ AL++LGY + +A Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP-----ALEALLSLGYNEYEAKI 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ +V + ++ S+IIR AL+ ++ Sbjct: 175 ALRNVDQSQEL----SEIIRQALKVMA 197 >gi|221064959|ref|ZP_03541064.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1] gi|220709982|gb|EED65350.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1] Length = 191 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L + G+G R+A+ VLS ++ +L +++ Q + + ++PGI K Sbjct: 61 FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + Q + N EQ I AL+ LGY +A+ A Sbjct: 121 AERLLLELKGKIGADTGA--QSLFANNSEQNDIQ----------QALMALGYSDKEASAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LKK S+ I+LAL+A++ Sbjct: 169 ----LKKLPPEVGVSEGIKLALKALT 190 >gi|315923964|ref|ZP_07920192.1| crossover junction ATP-dependent DNA helicase RuvA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622804|gb|EFV02757.1| crossover junction ATP-dependent DNA helicase RuvA [Pseudoramibacter alactolyticus ATCC 23263] Length = 231 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 97/189 (51%), Gaps = 2/189 (1%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG + D V+I+ G+ Y ++ + T++ L + + L + R+D + L+GF Sbjct: 32 IKGELSAQSADTVVIENNGIGYRVHVSLTTIAELPPLHEQLKLLLYPAFREDDVTLYGFA 91 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + +R F L S+ G+G + AMG+LS+ EL+ I+ ++K IA+ PGI K A RI Sbjct: 92 TAEERGLFGTLISISGIGPKAAMGLLSQFAEPELIRHIVNADAKAIARAPGIGKKTAERI 151 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + ELK + + V ++ + V A + + + ++ L+ LGY +A+ V Sbjct: 152 ILELKDRYKDV--VAEEGDAPVGGATAKLRAADNLTNEGVNGLLGLGYTYAEASDLVARA 209 Query: 185 LKKEKNIAD 193 L + I + Sbjct: 210 LAPDMTIEE 218 >gi|289578210|ref|YP_003476837.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus Ab9] gi|297544491|ref|YP_003676793.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527923|gb|ADD02275.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus Ab9] gi|296842266|gb|ADH60782.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 187 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + ++YV+ID G+ ++ P TL L G+ L+ H+R+D ++ Sbjct: 1 MIEYIRGMIEDIGQNYVIIDFMGIGIKVFVPFSTLKALPTKGNITKLYTYLHVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS + + + + K + +PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVNGVGPKGALSILSVVPIDNFAKVVNTGDYKALTLVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V + D + N+ A+ AL+ LGY + +A +A Sbjct: 121 AERIILELKDK-LPKEIVFESDNNLSNE--------------ALEALLALGYSKSEAISA 165 Query: 181 VVSV 184 + + Sbjct: 166 LADI 169 >gi|325128974|gb|EGC51825.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis N1568] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIIIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + + L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHAVTDGLFAAAPAADETEDIVGTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190 >gi|255327194|ref|ZP_05368269.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC 25296] gi|255295812|gb|EET75154.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC 25296] Length = 206 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 108/205 (52%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+V G ++Y RTLS L + G+ T+ +R++ + L Sbjct: 1 MIASLTGRVAQVGLDHAVINVNGFGMLVYATARTLSKL-RTGEEATVLTTMIVREESMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TA E+ ++ + K ++PGI K Sbjct: 60 YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S ++ + + + AL +LG+ + A+ A Sbjct: 120 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + N A +++ + +ALR + Sbjct: 171 IDAYV--QHNPAAETEPVGVALRGV 193 >gi|254787341|ref|YP_003074770.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901] gi|259495657|sp|C5BQT5|RUVA_TERTT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|237687527|gb|ACR14791.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901] Length = 206 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ GN+ +++D+ GV Y + P+ T L ++ L + + +L Sbjct: 1 MIGRLTGNLVVKQAPNLMVDINGVGYDLLAPMSTFYQLPELDAKVVLHTHFAVSETSQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ DR++F +L V GVG ++A+G++S + ++V I+ N + ++PG+ K Sbjct: 61 FGFIDQQDREFFRMLIKVNGVGPKMAVGIMS-METNDIVRCILEDNLNALVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K S ++ V S V + A S + A SALV LGY +A+ Sbjct: 120 AERLIIEMRDKLKSWQVTPSVDATGSLVALDSAA-PSQNAIVAEAESALVALGYKPVEAS 178 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 AV V E ++D +IRLALR Sbjct: 179 KAVARVTSDEITRSED--LIRLALR 201 >gi|121634135|ref|YP_974380.1| Holliday junction DNA helicase motor protein [Neisseria meningitidis FAM18] gi|166230574|sp|A1KRU4|RUVA_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120865841|emb|CAM09573.1| Holliday junction DNA helicase [Neisseria meningitidis FAM18] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + + L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHAVTDGLFAAAPAADETEDIVGTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190 >gi|73748284|ref|YP_307523.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1] gi|289432333|ref|YP_003462206.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT] gi|90134867|sp|Q3ZZK6|RUVA_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|73660000|emb|CAI82607.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1] gi|288946053|gb|ADC73750.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 12/184 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G +G +F H+R+D + L Sbjct: 1 MISSLNGILEASGKDWAVINVSGVGFRCYMPATSPALIGGLGQRVRVFTHLHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 +SRI+ ELK D N E + + + ++ L LGY +A A Sbjct: 121 SSRIILELK------------DKIAKNWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168 Query: 181 VVSV 184 + S+ Sbjct: 169 ISSL 172 >gi|290475277|ref|YP_003468165.1| Holliday junction helicase subunit A [Xenorhabdus bovienii SS-2004] gi|289174598|emb|CBJ81392.1| Holliday junction helicase, subunit A [Xenorhabdus bovienii SS-2004] Length = 205 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L +IG TLF + +R+D L Sbjct: 1 MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQEATLFTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAITSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + L+ + + +N +QA+ S A SALV+LGY + Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSNDINLPAVAKQAN--SNTDIEAEAASALVSLGYKLQE 178 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A+ V V K AD +IR ALRA Sbjct: 179 ASRMVSKVAKPG---ADCETLIREALRA 203 >gi|88801662|ref|ZP_01117190.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii 23-P] gi|88782320|gb|EAR13497.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii 23-P] Length = 193 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V++D GV Y+++ + T + L + L+ +R+D L Sbjct: 1 MITQVRGRLVEKNPTEVVVDCNGVGYLLHISLNTYAAL-PADENVVLYTHLSVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R F L SV GVG +A +LS +TA E+ ++I +N +I + GI K Sbjct: 60 FGFINKTERAIFKFLISVSGVGPSIARTMLSSMTAEEIQQAIASENVALIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + MS N + A+SAL LG+ + Q+ Sbjct: 120 AQRVIVDLKDKIVKTFDLDEVSMSPSNTNKGE----------ALSALEVLGFQRKQSDKL 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++K+ N A QII+LAL+++ Sbjct: 170 VATIVKEYPN-ATIEQIIKLALKSL 193 >gi|167623851|ref|YP_001674145.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis HAW-EB4] gi|189045770|sp|B0TSA6|RUVA_SHEHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167353873|gb|ABZ76486.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis HAW-EB4] Length = 205 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 2/186 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VL+DV GV Y I P+ + L ++G ++ +R+D L Sbjct: 1 MIGRIRGLLIEKQAPEVLVDVSGVGYEIQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL GVG ++ + +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFISKQERSLFRLLIKANGVGPKLGLTILSGMTAREFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + ++ + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPEAVNTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSV 184 AV SV Sbjct: 181 KAVSSV 186 >gi|218128788|ref|ZP_03457592.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697] gi|317475376|ref|ZP_07934640.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii 1_2_48FAA] gi|217989016|gb|EEC55332.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697] gi|316908404|gb|EFV30094.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii 1_2_48FAA] Length = 198 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L +ID G+ Y + + T + + GK C L++ +R+D Sbjct: 1 MIEYIKGEIAELSPANAIIDCNGLGYAVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R+ F+LL SV G+G A +LS ++ +EL+ +I N+ ++ + GI +K Sbjct: 59 LYGFIDKQERELFLLLISVSGIGGNTARMILSALSPSELINAISTGNANLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ +LK K I + D+S A + AI+AL LG+ Q + Sbjct: 119 TAQRVIVDLKDK-IKPGGIAAGTTDISAFTAANAQVQE------EAIAALTMLGFAQAPS 171 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V+++LK++ A Q+I+LAL+ Sbjct: 172 QKVVMAILKEDAG-APVEQVIKLALK 196 >gi|270296033|ref|ZP_06202233.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20] gi|270273437|gb|EFA19299.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20] Length = 200 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 111/206 (53%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G I L +ID G+ Y + + T + + GK C L++ +R+D Sbjct: 1 MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177 A RI+ +LK K I SVV + + + S + + A++AL LG+ Q + Sbjct: 119 TAQRIIVDLKDK-IKTGSVVAGNAGTI----GTLVSAANAQVQEEAVAALTMLGFAQAPS 173 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V+++LK+E + A Q+I+LAL+ Sbjct: 174 QKVVLAILKEEPS-APVEQVIKLALK 198 >gi|161870798|ref|YP_001599971.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 053442] gi|189045759|sp|A9M3B7|RUVA_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161596351|gb|ABX74011.1| Holliday junction DNA helicase [Neisseria meningitidis 053442] gi|308388484|gb|ADO30804.1| Holliday junction DNA helicase [Neisseria meningitidis alpha710] gi|325130991|gb|EGC53718.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis OX99.30304] gi|325131591|gb|EGC54298.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M6190] gi|325143104|gb|EGC65451.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 961-5945] gi|325143174|gb|EGC65520.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 961-5945] gi|325197549|gb|ADY93005.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis G2136] Length = 194 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V + D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190 >gi|153955759|ref|YP_001396524.1| Holliday junction DNA helicase RuvA [Clostridium kluyveri DSM 555] gi|219856126|ref|YP_002473248.1| hypothetical protein CKR_2783 [Clostridium kluyveri NBRC 12016] gi|146348617|gb|EDK35153.1| RuvA [Clostridium kluyveri DSM 555] gi|219569850|dbj|BAH07834.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 196 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 9/181 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG +G+ +DY++++ G+ Y I T++ KI + TL+++ +R+D I L+GFL Sbjct: 5 IKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKIDENITLYLQQIVREDFIGLYGFL 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + F LL ++ G+GA+ A+ +LS + L +II + K + + PG+ K A RI Sbjct: 65 TKEEINMFNLLLTINGIGAKAALSLLSISSVNNLKYAIISGDEKNLIRAPGVGKKTAQRI 124 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATTAVVS 183 + ELK K + +N+E+ H S + + AL+ LGY + +A AV S Sbjct: 125 ILELKDKI--------KPEEIINQEKDHRQVSQEEETMEVLEALIALGYSEKEAGRAVAS 176 Query: 184 V 184 + Sbjct: 177 I 177 >gi|295399354|ref|ZP_06809336.1| Holliday junction DNA helicase RuvA [Geobacillus thermoglucosidasius C56-YS93] gi|312110086|ref|YP_003988402.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1] gi|294978820|gb|EFG54416.1| Holliday junction DNA helicase RuvA [Geobacillus thermoglucosidasius C56-YS93] gi|311215187|gb|ADP73791.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1] Length = 199 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 110/205 (53%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P S T++ ++R+D + L Sbjct: 1 MIEFIRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDMLAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ +LVE+I +N + + PG+ K Sbjct: 60 YGFRTREERALFAKLLQVSGIGPKGGLAILAAGRPEQLVEAIEQENETFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++++ D+ +E +H+ ++ AI AL LGY + + Sbjct: 120 ARQMILDLKGKLTAVAARTYPDLFHPEEEPSHLSALE----EAIEALKALGYAEREIQKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S++K +N++ D Q ++ AL+ + Sbjct: 176 VPSLMK--ENLSTD-QYVKRALQQL 197 >gi|302550160|ref|ZP_07302502.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes DSM 40736] gi|302467778|gb|EFL30871.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes DSM 40736] Length = 201 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 17/203 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RMGQPAKLHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ ELK G+ I + V +S ++Q H +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGEPIG-APAVGAPVSNGWRDQLH------------AALIGLGYATREA 166 Query: 178 TTAVVSVLKKEKNIADDSQIIRL 200 AV +V + + + Q+ +L Sbjct: 167 DEAVAAVTPQAEAVEGTPQVGQL 189 >gi|25028330|ref|NP_738384.1| Holliday junction DNA helicase motor protein [Corynebacterium efficiens YS-314] gi|259507385|ref|ZP_05750285.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens YS-314] gi|29336725|sp|Q8FPK4|RUVA_COREF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|23493615|dbj|BAC18584.1| holliday junction DNA-helicase RuvA [Corynebacterium efficiens YS-314] gi|259165010|gb|EEW49564.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens YS-314] Length = 204 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 3/191 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ QGV Y + TL+ L + G+ TL +R+D ++L Sbjct: 1 MIASLRGTVISIGLGTAVIECQGVGYEVTTTPTTLARLQR-GEEATLLTTMVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D R+ F LLQ+V G+G R+A+ S +T E+ ++I ++K + ++PG+ ++ Sbjct: 60 YGFIDDQSREMFALLQTVTGLGPRLALACESVLTPLEIAQAIAGGDAKTLQRVPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + V D + Q AL LG+ + QA A Sbjct: 120 ADRLIVELKDKVAAYTVGVVDDGAPTAPTQGVAPV--VVVDQVTQALTGLGFTEKQADDA 177 Query: 181 VVSVLKKEKNI 191 V +VL + + Sbjct: 178 VAAVLSADPGL 188 >gi|120554625|ref|YP_958976.1| Holliday junction DNA helicase RuvA [Marinobacter aquaeolei VT8] gi|166230564|sp|A1U1C0|RUVA_MARAV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120324474|gb|ABM18789.1| Holliday junction DNA helicase subunit RuvA [Marinobacter aquaeolei VT8] Length = 209 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + L++ G+ Y I P T L + G TL +R+D L Sbjct: 1 MIGRIRGMLIEKSPGQALVECSGLGYEIDIPYTTFFHLPETGQEVTLHTHFAVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S LDR F LL V GVG ++A+G+LS + A + + + +++ + ++PG+ K Sbjct: 61 YGFASRLDRNLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVEARDANSLVKLPGVGKKT 120 Query: 121 ASRIMTE-------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ E L+G+ + V QA P A +AL+ LGY Sbjct: 121 AERLLIEMADRIGQLEGQFVPSQPDVPTGAGAATASQAG----PDPREEAEAALIALGYK 176 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALR 203 +A A+ V + N +IRLAL+ Sbjct: 177 PQEAAKAISKVAGPDMN---SETLIRLALK 203 >gi|57234748|ref|YP_181186.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes 195] gi|90134862|sp|Q3Z9B3|RUVA_DEHE1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57225196|gb|AAW40253.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes 195] Length = 194 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 77/131 (58%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G++G +F H+R+D + L Sbjct: 1 MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPG+ K Sbjct: 61 FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGVGKKT 120 Query: 121 ASRIMTELKGK 131 ASRI+ ELK K Sbjct: 121 ASRIVLELKDK 131 >gi|197301661|ref|ZP_03166731.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC 29176] gi|197299101|gb|EDY33631.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC 29176] Length = 205 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + E ++DV GV Y IY P + LS L +G + ++R+D ++L Sbjct: 1 MISYIRGELCDIEEQKAIVDVNGVGYGIYMPQQALSLLPPMGQQVKIHTYLNIREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL V G+G + + +LS ++ EL +++ ++K I+ PGI K Sbjct: 61 FGFLTKEDLNVFRLLIGVNGIGPKAGLNILSCLSPDELRFAVLSGDAKAISATPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A +++ ELK K +++ +++ + E + S A N A+ AL LGYG Sbjct: 121 AEKLILELKDK-LNIEDMLEHAAHGGDSED--LASGTDTASNTMQAEAVQALTALGYGSA 177 Query: 176 QATTAV 181 ++ AV Sbjct: 178 ESLRAV 183 >gi|29654859|ref|NP_820551.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 493] gi|153208743|ref|ZP_01946981.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat Q177'] gi|161831144|ref|YP_001597405.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331] gi|165918688|ref|ZP_02218774.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334] gi|212219280|ref|YP_002306067.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuK_Q154] gi|44888458|sp|Q83BE2|RUVA_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045751|sp|A9N9A2|RUVA_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698727|sp|B6J505|RUVA_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29542128|gb|AAO91065.1| holliday junction DNA helicase [Coxiella burnetii RSA 493] gi|120575775|gb|EAX32399.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat Q177'] gi|161763011|gb|ABX78653.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331] gi|165917623|gb|EDR36227.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334] gi|212013542|gb|ACJ20922.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154] Length = 200 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G I Y+L++V GV Y I P+ T L + + L+ +R+D L Sbjct: 1 MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+ F L V GVG ++A+ +LS I E V ++ QN + +IPG+ K Sbjct: 61 YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E K LS D ++ S +AISAL+ LGY +A A Sbjct: 121 AERLVIETKD---GLSRWHTNDTPSPEGLRS---SNTQPTQDAISALMALGYKPQEAKRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + ++ K + + +IRLAL+ Sbjct: 175 IDAIQKPDLSA---ETLIRLALK 194 >gi|322420882|ref|YP_004200105.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18] gi|320127269|gb|ADW14829.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18] Length = 199 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 12/177 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D+V++DV GV Y ++ P T L G TL + T +++D I L Sbjct: 1 MIALLTGKIAYKAPDHVILDVNGVGYHVFIPFSTYYALPAEGGTATLQIHTSVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL V GVG ++A +LS EL ES++ + ++ IPGI K Sbjct: 61 YGFRTQQEKELFQLLIGVSGVGPKLANSILSNSEPAELAESLVSGDLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ ELK K L + V +E + +SAL+NLGY + Sbjct: 121 AERLVLELKEKIRKLGIAQPATSAAAAPVRQETRE---------DVLSALINLGYKE 168 >gi|302391487|ref|YP_003827307.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM 5501] gi|302203564|gb|ADL12242.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM 5501] Length = 201 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 18/208 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + E ++IDVQGV Y + P + L IG+ ++ T++R+D+ L Sbjct: 1 MIAHLTGELVLKEEARIVIDVQGVGYEVMIPTSVQNRLPNIGEDIKVYTHTYVREDRFVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + F L V VG +VA+ +LS + A E ++ ++ +V+ ++ GI K Sbjct: 61 YGFLQLSELELFGKLLKVSKVGPKVAVSILSTLNAREFKLAVAKEDIEVLKEVKGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-----VNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++ E+KGK I L +++++ S + +E+ A+ L+NLGY Sbjct: 121 AQRLILEMKGK-IDLDRIMEEEESSQSVDGIEREE------------AVEGLMNLGYNIQ 167 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 +A AV K A ++I+LAL+ Sbjct: 168 EAREAVTEACKGVDEAAGVEEVIKLALQ 195 >gi|320160780|ref|YP_004174004.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea thermophila UNI-1] gi|319994633|dbj|BAJ63404.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea thermophila UNI-1] Length = 191 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L E Y++I V V ++ P TL + G+ LF +R+D + L Sbjct: 1 MIAYVEGKVLELGETYLVIQVGAVGLQVFVP-STLRAKARAGETLVLFTYLVVREDLMAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R++F LL V G+G R+A+ +LS ++ + +I+ + +V++++PG+ K Sbjct: 60 YGFETPLEREFFGLLLGVNGIGPRLAISILSVLSVDAIRRAILSEQPEVLSRVPGVGRKN 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ L+GK + + M+ V++E + AL +LGY +A TA Sbjct: 120 AQKIILSLQGKVTAEGLEGVRPMAEVDQE-------------VLEALTSLGYSVVEAQTA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V S+ K D + ++LALR S Sbjct: 167 VQSIPKDAP--MDLEERLKLALRYFST 191 >gi|323486643|ref|ZP_08091964.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14163] gi|323400024|gb|EGA92401.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14163] Length = 203 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 108/209 (51%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D ++++ V IY P+ L L +G+ ++ +R+D + L Sbjct: 1 MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L V G+G + A+G+LS ++ +L +I+ ++K I++ PG+ K Sbjct: 61 YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120 Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ +LK K + L+SV D E+ + M A +ALV LGY +A Sbjct: 121 AQRIILDLKDKVSAEEMLASVADTD------ERTSVPLMQEAGREAATALVALGYSNLEA 174 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + AV +V E D ++R +L+ ++ Sbjct: 175 SKAVKNVQITED--MDAEAVLRASLKYLA 201 >gi|326201641|ref|ZP_08191512.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM 2782] gi|325988241|gb|EGD49066.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM 2782] Length = 201 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 30/218 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E D ++++ G+ Y I+ + T++ LG+ G +F ++R+D L Sbjct: 1 MFAYIKGTVEVKNNDSIIVEAGGIGYRIFTALSTINNLGQTGTTVKIFTHYYVREDIAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L +V GVG + A+ ++S ++ + +++ Q++K + + GI MK+ Sbjct: 61 YGFGTMEELSMFEMLLAVSGVGPKAAISLISTLSPSRFALAVVSQDTKSLTKAQGIGMKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP------SFAIN------AISALV 168 A RI+ ELK K ++KEQ S+P SFA A+SAL+ Sbjct: 121 AQRIILELKDK--------------ISKEQL-TASIPTAGSENSFAPGDSVLSEAVSALM 165 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 LGYG +A+ + + + ++ D +I+ AL+++S Sbjct: 166 VLGYGSVEASGIITGIYEDGMSVED---LIKKALKSLS 200 >gi|148653226|ref|YP_001280319.1| Holliday junction DNA helicase RuvA [Psychrobacter sp. PRwf-1] gi|172048524|sp|A5WFC8|RUVA_PSYWF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148572310|gb|ABQ94369.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter sp. PRwf-1] Length = 210 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 12/213 (5%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + L L+ GV Y + P+ C ++ +L+ H+R+D Sbjct: 1 MIGLIEGRVCHLSAPVACLMTASGVGYEVELPLPDF-CQLQLEAMASLWTHLHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVGA++A+ ++S +ATEL I +N + ++PGI K Sbjct: 60 LYGFLHPTERDVFRQLIRVNGVGAKMALAMMSTFSATELKHCIDTENDAALTRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINA--ISALVNLGYGQD 175 A R++ ELKGK +Q DMS + ++Q I + I A SAL++LGY Sbjct: 120 TAQRLLIELKGK----FDHIQSDMSLLTEVEQQIGIAANSEGVILAEVESALISLGYRDK 175 Query: 176 QATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 +A A+ + + + + + D +++L L+ +S Sbjct: 176 EAQQAIKAARETDAGQQLVDTQSLLKLTLKQLS 208 >gi|120598878|ref|YP_963452.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1] gi|146293036|ref|YP_001183460.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32] gi|166200263|sp|A4Y6S8|RUVA_SHEPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200265|sp|A1RJQ3|RUVA_SHESW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120558971|gb|ABM24898.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1] gi|145564726|gb|ABP75661.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32] gi|319426434|gb|ADV54508.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens 200] Length = 205 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 111/207 (53%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y + P+ + L +I ++ +R+D L Sbjct: 1 MIGRLRGVLVEKQAPEILMDVNGVGYELQMPLTSFYELPEIDHETVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPTPTVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K+ D +I+ AL+++ Sbjct: 181 KSVSAAYKEG---MDSETLIKAALKSM 204 >gi|239995979|ref|ZP_04716503.1| Holliday junction DNA helicase motor protein [Alteromonas macleodii ATCC 27126] Length = 206 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 14/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+DV GV Y I+ P+ + L +G+ ++ +R+D L Sbjct: 1 MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R F L GVG ++ + +LS ++A++ + S+ ++ + +PGI K Sbjct: 61 FGFADKMERGLFRELIKANGVGPKLGLAILSGMSASQFLASVQNEDVSALVSLPGIGKKT 120 Query: 121 ASRIMTELK------GKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ ELK GKA S++ D+ N I ++ A SAL+ LGY Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSTNT----IVAVNDAREEAQSALIALGYK 176 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 QA+ V SV K+ + +IR +L+A Sbjct: 177 PAQASKLVDSVYKEG---MESEALIRESLKA 204 >gi|260173998|ref|ZP_05760410.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D2] gi|315922266|ref|ZP_07918506.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2] gi|313696141|gb|EFS32976.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2] Length = 200 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176 A R++ +LK K + MS A + P+ A A+SAL LG+ Sbjct: 119 TAQRVIVDLKDK------IKTMGMSAAGGASAGLLLQPANAEVQEEAVSALTMLGFAAAP 172 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 + V+++LK+E + A ++I+LAL+ Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198 >gi|269925207|ref|YP_003321830.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC BAA-798] gi|269788867|gb|ACZ41008.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC BAA-798] Length = 192 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+IE D +++ V GV ++ P + +G+IGD L +R+D + L Sbjct: 1 MIASIKGHIEYKLNDGLIVQVGGVGLRVFTPSSMVREIGEIGDEVYLHTHLMVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F LL SV GVG A+ +LS + E+ +I +N++ + IP I K+ Sbjct: 61 YGFSTREQLRLFELLISVTGVGPNHALNILSSASVEEIQTAIAQENAQFFSLIPRIGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELKGK + S Q +S ++E +SAL+ LGY +A A Sbjct: 121 AARIILELKGK-VEPSGEAVQIISHKDEE-------------LVSALLALGYTLGEAQAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V S L +K + + + +RLAL S Sbjct: 167 VRS-LPTDKELPMEEK-LRLALSYFST 191 >gi|160942099|ref|ZP_02089414.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC BAA-613] gi|158434990|gb|EDP12757.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC BAA-613] Length = 209 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + ED ++++ V I+ P+ L L +G T++ +R+D + L Sbjct: 1 MISYVKGPLMAIEEDVIVVEAGHVGLAIHVPVSLLPELPGMGKEVTVYTYFQVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL DR F L V G+G + A+G+LS + +L +I+ ++ K +A+ PGI K Sbjct: 61 YGFLHSQDRDMFRQLLGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ +LK K IS+ V+ A + + A A+ ALV LGY + Sbjct: 121 AQRLILDLKDK-ISMDDVLGNMAGGAGMGAADTGASVAGLVEAAKEAVQALVALGYTNTE 179 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ AV V + ++D +++ +L+ +S Sbjct: 180 ASRAVKQVEVTDGMTSED--VLKASLKHLS 207 >gi|313901946|ref|ZP_07835363.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus DSM 13965] gi|313467792|gb|EFR63289.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus DSM 13965] Length = 221 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 102/192 (53%), Gaps = 11/192 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + G + D IDV GV + + +T L +G+ L +R+DQ L Sbjct: 1 MIAFLRGELAGFHGDEAWIDVGGVGFRVAVSRQTQRRLPPVGEPVRLLTRLVVREDQWSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V GVG RVA+ VLS +T +L +++LQ+ ++ ++PG+ K+ Sbjct: 61 YGFATADEQAAFDALVAVSGVGPRVALSVLSVLTPEDLRRAVVLQDPALLTRVPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQD-MSCVNKEQAHICSMPSFAI-------NAISALVNLGY 172 A R++TEL+ + L + +D + ++PS +A++AL LGY Sbjct: 121 ARRLLTELRDR---LGQPLAEDGAAGGPAATGTAGAVPSPGTGEASPRDDALAALEALGY 177 Query: 173 GQDQATTAVVSV 184 + +A A+ +V Sbjct: 178 SRAEAEGALAAV 189 >gi|297559814|ref|YP_003678788.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844262|gb|ADH66282.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 206 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +IDV GV + C LS L +G+ T+ +R++ + L Sbjct: 1 MIAFLTGRVAARGAGTAVIDVGGVGMTVQCTPSALSRL-HVGETGTVATSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D ++ F LQ+ GVG R+A+ +LS + + L ++ +++ + ++PGI K Sbjct: 60 FGFADDDEKHLFEQLQTASGVGPRLALAMLSVHSPSSLRHAVSTEDTTALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--ISALVNLGYGQDQAT 178 A RI+ EL+GK L + V D + E A S P+ A +S LVNLG+ A Sbjct: 120 AQRIVLELRGK---LDAPVLTDGTLPGSEAAGTGSEPNGAWRGQVVSGLVNLGWSAKDAE 176 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A +V + ++ D + ++R ALR +S Sbjct: 177 AAASAVAAEAEHTDDVAVLLRSALRRLS 204 >gi|220932069|ref|YP_002508977.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168] gi|254766964|sp|B8CXG3|RUVA_HALOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219993379|gb|ACL69982.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 16/175 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KGN+ E+ V+++ GV Y + P + L +G+ LFV T++R+D + L Sbjct: 1 MIGYLKGNVIWKAENKVILETGGVGYRVLVP--STVRLKPVGEKLELFVYTYVREDSLDL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L SV G+G R A+ +LS ++ + +E+I+ + ++ Q+ GI K Sbjct: 59 YGFKTMEERELFETLLSVSGIGPRAAINILSSLSYKKFIEAILTEKVSILKQVSGIGPKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQ 174 A R++ ELKGK +DMS +E +P +S AL +LGY + Sbjct: 119 AKRLILELKGKL--------KDMSGDFEE-----PLPDNRNTELSDALASLGYSE 160 >gi|238021644|ref|ZP_04602070.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147] gi|237866258|gb|EEP67300.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147] Length = 195 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + + IDV G+ Y + ++T L IGD ++ + +R+D L Sbjct: 1 MITHLTGKLAEKHPPQITIDVNGIGYELEVSMQTFYQLPNIGDSLHIYTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS +A EL +I ++ K ++ PGI K Sbjct: 61 FGFAGKAERATFRQLVKVSGIGAKTALGILSAFSADELAAAIAQEDIKRLSAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK S + P + + IS L+ LGY + +A A Sbjct: 121 AERMILELRGKLAPTSGEATGLFAP--------AVTPDASEDIISTLLALGYNEREARAA 172 Query: 181 VVSVLKKEKNIADDSQI---IRLALR 203 K I D+ + +RLAL+ Sbjct: 173 T-------KGIPADTDVGEGVRLALK 191 >gi|297183449|gb|ADI19581.1| holliday junction resolvasome, DNA-binding subunit [uncultured Acidobacteria bacterium HF0770_27F21] Length = 192 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 19/208 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +YV++DV GV Y +Y P+ + +G+IGD L + TH+R D +L Sbjct: 1 MIAALRGLLHEKTPEYVIVDVGGVGYQVYLPLPSFYEIGEIGDEVLLRIHTHVRDDTFKL 60 Query: 61 FGFLSDLDRQ-WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF DL +Q F L SV G+G ++A+ +LS + L+ +I+ + ++ IPG+ K Sbjct: 61 YGF-KDLPQQRLFERLISVAGIGPKLAVTILSGMDTDLLIGAIVDSDIVRLSTIPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R+ ELK K L +V D Q + +SAL NLGY A Sbjct: 120 TAERMALELKEKVDDL-GLVSSDSGPRGIRQ-----------DVLSALENLGYRPRDAER 167 Query: 180 AVVSVLKKEKNIADDSQ-IIRLALRAIS 206 A L+K ++ AD + +++ LR ++ Sbjct: 168 A----LEKVEDPADQFEALLKQTLRVLA 191 >gi|319786205|ref|YP_004145680.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis 11-1] gi|317464717|gb|ADV26449.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis 11-1] Length = 196 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 10/173 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L ++G +LF ++D + L Sbjct: 1 MIGRLRGTLVLKQPPWLVVDVNGVGYELEAPMSTFYDLPELGREVSLFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E + + + +IPGI K Sbjct: 61 YGFLRESERRLFRDVQKVSGIGAKIALAVLSGVSVDEFARLVQAGDVTALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGY 172 A R++ EL+ +A L+ A + + P + +A +AL LGY Sbjct: 121 AERMVVELRDRAADLAG---------GGAVAGMTAAPGDPMADAATALQQLGY 164 >gi|261379647|ref|ZP_05984220.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703] gi|284798132|gb|EFC53479.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL ++I ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSTMNADELAQAIAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172 A R++ EL+GK +S H S FA +A I+ L+ LGY Sbjct: 121 AERMVLELRGKLVS-----------------HTVSDGLFAPDAVADESQDIINTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A A + K + + +RLAL+ Sbjct: 164 NEREAKAATKGIPKG----TEVGEGVRLALK 190 >gi|319903005|ref|YP_004162733.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes P 36-108] gi|319418036|gb|ADV45147.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes P 36-108] Length = 200 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 110/206 (53%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L +ID G+ Y + + T + + GK C L++ +R+D Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYAAVQGK--KECKLYIYEAIREDAYI 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKSVKGIGLK 118 Query: 120 IASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ +LK K S+++ DM+ + + + A++AL LG+ Q + Sbjct: 119 TAQRVIVDLKDKIKTDSVATGSAGDMTSL-----LMAANTQVQEEAVAALTMLGFAQAPS 173 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V+++LK+ N A Q+I+LAL+ Sbjct: 174 QKVVLAILKENPN-APVEQVIKLALK 198 >gi|254805692|ref|YP_003083913.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] gi|254669234|emb|CBA08082.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + + L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVGTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V K D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPKG----TDVGEGVRLALK 190 >gi|84388519|ref|ZP_00991066.1| Holliday junction DNA helicase motor protein [Vibrio splendidus 12B01] gi|84377068|gb|EAP93939.1| Holliday junction DNA helicase motor protein [Vibrio splendidus 12B01] Length = 203 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 108/208 (51%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177 A R++ E+K + L D+ + A + SMP+ A+SAL+ LGY QA Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQA 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V V K Q+IR AL+++ Sbjct: 178 SKVVAQVA---KGGMTSEQLIREALKSM 202 >gi|229470526|sp|B4RTT9|RUVA_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 206 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+DV GV Y I+ P+ + L +G+ ++ +R+D L Sbjct: 1 MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R F L GVG ++ + +LS ++A + + S+ ++ +A +PGI K Sbjct: 61 FGFADKMERGLFRELIKANGVGPKLGLAILSGMSAGQFLASVQNEDVSALASLPGIGKKT 120 Query: 121 ASRIMTELK------GKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ ELK GKA S++ D+ N I + A SAL+ LGY Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSPNT----IVEVNDAREEAQSALIALGYK 176 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 QA+ V SV + + +IR AL+A Sbjct: 177 PAQASKLVESVYSEG---MESEALIREALKA 204 >gi|86146483|ref|ZP_01064806.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222] gi|218709101|ref|YP_002416722.1| Holliday junction DNA helicase RuvA [Vibrio splendidus LGP32] gi|254767400|sp|B7VMI3|RUVA_VIBSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85835746|gb|EAQ53881.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222] gi|218322120|emb|CAV18233.1| Holliday junction DNA helicase ruvA [Vibrio splendidus LGP32] Length = 203 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF---AINAISALVNLGYGQDQA 177 A R++ E+K + L D+ + A + SMP+ A+SAL+ LGY QA Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQA 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V V K+ Q+IR AL+++ Sbjct: 178 SKVVSQVA---KDGMTSEQLIREALKSM 202 >gi|19552871|ref|NP_600873.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum ATCC 13032] gi|62390542|ref|YP_225944.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum ATCC 13032] gi|20455261|sp|Q9AE10|RUVA_CORGL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13346823|gb|AAK19839.1|AF331924_4 Holliday junction DNA-helicase RuvA [Corynebacterium glutamicum] gi|21324430|dbj|BAB99054.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium glutamicum ATCC 13032] gi|41325880|emb|CAF20043.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium glutamicum ATCC 13032] Length = 206 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 116/208 (55%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV Y + TLS L + G+ + +R+D ++L Sbjct: 1 MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + R+ F +LQ+V G+G R+A+ S ++ E+ ++I ++K + ++PG+ ++ Sbjct: 60 YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKTLQRVPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQAT 178 A R++ ELKGK + ++ VV + ++ A+I S + +S ALV LG+ + Q+ Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEGGEQISLPNANIAS--EVVVEQVSQALVGLGFSEKQSD 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV VL + ++ D S +R AL +S Sbjct: 178 DAVSFVLAADPSL-DTSGALRAALAKLS 204 >gi|319638740|ref|ZP_07993499.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa C102] gi|317399981|gb|EFV80643.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa C102] Length = 194 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL +++ ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172 A R++ EL+GK IS H S FA +A I+ L+ LGY Sbjct: 121 AERMVLELRGKLIS-----------------HTVSDGLFAPDAVADKSQDIINTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A A + K + + +RLAL+ Sbjct: 164 NEREAKAATKGIPKG----TEVGEGVRLALK 190 >gi|237809451|ref|YP_002893891.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187] gi|259495658|sp|C4LBN1|RUVA_TOLAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|237501712|gb|ACQ94305.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187] Length = 206 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 12/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DV GV Y + P+ L +G T+ +R+D L Sbjct: 1 MIGRLHGIIIEKSPPEILLDVGGVGYELQLPMTCFYELPAVGQEATIITHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ ++S ++A + V + ++ + ++PG+ K Sbjct: 61 YGFNTRQERTLFRELLKANGVGPKLALAIMSGMSANQFVSCVEREDVSSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------NAISALVNLGYGQ 174 A R++ E+K + L + D+ + A + PS A A++AL+ LGY Sbjct: 121 AERLIVEMKDR---LKGWISHDLFTPYTDAAPVDHEPSLAPADTVESEAVAALLALGYKP 177 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ V V+K E + + +IR ALR++ Sbjct: 178 QQASLVVSKVIKPEMTVEN---VIREALRSM 205 >gi|15676189|ref|NP_273321.1| Holliday junction DNA helicase motor protein [Neisseria meningitidis MC58] gi|20455266|sp|Q9K1A2|RUVA_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|7225489|gb|AAF40719.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis MC58] gi|261391796|emb|CAX49251.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 8013] gi|316985194|gb|EFV64146.1| holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76] gi|325137090|gb|EGC59686.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M0579] gi|325139154|gb|EGC61700.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis ES14902] gi|325141101|gb|EGC63604.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis CU385] gi|325199468|gb|ADY94923.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76] gi|325202908|gb|ADY98362.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240149] gi|325207293|gb|ADZ02745.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis NZ-05/33] Length = 194 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHTVTDGLFAAAPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V + D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190 >gi|241760730|ref|ZP_04758822.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114] gi|241318911|gb|EER55437.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114] Length = 194 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGEAVHLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL ++I ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172 A R++ EL+GK +S H S FA +A I+ L+ LGY Sbjct: 121 AERMVLELRGKLVS-----------------HTVSDGLFAPDAVADESQDIINTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A A + K + + +RLAL+ Sbjct: 164 NEREAKAAAKGIPKG----TEVGEGVRLALK 190 >gi|295091401|emb|CBK77508.1| Holliday junction DNA helicase subunit RuvA [Clostridium cf. saccharolyticum K10] Length = 248 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 5/187 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +I I+G + + +++ G+ Y I+ P+ L L +G ++ +R+D + L Sbjct: 42 VISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSL 101 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ DR+ F L V G+G + A+G+L + +L +I+ + K I++ PGI K Sbjct: 102 YGFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKT 161 Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ +LK K + SV D E A + + A A+ ALV LGY +A Sbjct: 162 AQRIILDLKDKVSAEEMFPSVTASDGGAKAPEAASLTA--EAAREAVDALVALGYSNLEA 219 Query: 178 TTAVVSV 184 + AV V Sbjct: 220 SKAVKQV 226 >gi|72162493|ref|YP_290150.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX] gi|90136068|sp|Q47N42|RUVA_THEFY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71916225|gb|AAZ56127.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +IDV GV ++C L+ L ++G+ T+ +R+D + L Sbjct: 1 MIAFLSGRVVSRGAETAVIDVGGVGMTVHCTPAALARL-RVGEEATVATALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R F LQ+ GVG R+A+ +LS T L +I +++ + ++PGI K Sbjct: 60 FGFADDDERDTFERLQTASGVGPRLALAMLSVHTPDALRRAIATEDTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK + EQ+ + ++ +S LVNLG+ +A A Sbjct: 120 AQRIVLELKGKLGEPGG-----DTAATPEQSAAAAPRNWRAQVVSGLVNLGWSTREAEAA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V + D + ++R ALR +S Sbjct: 175 ADAVAAEAGEQPDVAALLRSALRRLS 200 >gi|331697370|ref|YP_004333609.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia dioxanivorans CB1190] gi|326952059|gb|AEA25756.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia dioxanivorans CB1190] Length = 199 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 108/204 (52%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQI 58 MI ++G + + D+ +++V GV + ++ TL L G+ TL V +R+D + Sbjct: 1 MISSVRGEVLSVGLDHAVVEVGGVGFAVFATPATLGGLRRGQEARLETLLV---VREDSL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF +R+ F+LLQ+V GVG R+A+ L+ + L ++ ++ + +IPG+ Sbjct: 58 TLYGFADAEERELFVLLQTVSGVGPRLALATLAVLDPQSLRRALADGDTATLTRIPGVGR 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ EL+ K ++ + V+ D+ + AH + + ALV LG+ A Sbjct: 118 KSAERLVVELRDKVVAPAPVLAGDVRPLVTGNAHRDQV-------VEALVGLGFTARPAE 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202 AV +L + + A+ + ++R AL Sbjct: 171 AAVDGILAGDPD-AEPAALLRSAL 193 >gi|153003861|ref|YP_001378186.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5] gi|166229629|sp|A7H906|RUVA_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152027434|gb|ABS25202.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5] Length = 197 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D+V++DV GV Y+++ +L+ L G TL + T++RQD I L Sbjct: 1 MIARLAGKVAEKGADHVVLDVGGVGYLVHLSAVSLAGLPPQGGDGTLRIFTNVRQDAIEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F L V+GVG R A +LS I A EL +++ + + ++PGI K Sbjct: 61 YGFASEDEEAVFRALIDVKGVGPRAAQNILSGIDARELAQAVAGSDVARLTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A R++ ELK K ++ + + + P + ALVNLGY Q Sbjct: 121 AERLVVELKEK-----------LALLARAAGPARAKPGAGVVEQLRQALVNLGYKPPQ-A 168 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 A L+ E +++R AL+ Sbjct: 169 DAAADALRDEAEGKKLDELLREALK 193 >gi|300705140|ref|YP_003746743.1| subunit A of ruvABC holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum CFBP2957] gi|299072804|emb|CBJ44159.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum CFBP2957] Length = 193 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ A M A++ ++AL+ LGY +A A Sbjct: 121 AERLLL-------ELKGKLGADLGAAPGGPA----MSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K+ S+ I+LAL+A+S Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191 >gi|325135068|gb|EGC57696.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M13399] Length = 194 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + +S L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHAVTDGLFAAAPAADETEDIVSTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V + D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190 >gi|145295781|ref|YP_001138602.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum R] gi|166230545|sp|A4QEN4|RUVA_CORGB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|140845701|dbj|BAF54700.1| hypothetical protein [Corynebacterium glutamicum R] Length = 206 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 116/208 (55%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV Y + TLS L + G+ + +R+D ++L Sbjct: 1 MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + R+ F +LQ+V G+G R+A+ S ++ E+ ++I ++K + ++PG+ ++ Sbjct: 60 YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKALQRVPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQAT 178 A R++ ELKGK + ++ VV + ++ A+I S + +S ALV LG+ + Q+ Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEAGEQISLPNANIAS--EVVVEQVSQALVGLGFSEKQSD 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV VL + ++ D S +R AL +S Sbjct: 178 DAVSFVLAADPSL-DTSGALRAALAKLS 204 >gi|307826389|ref|ZP_07656591.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum SV96] gi|307732566|gb|EFO03441.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum SV96] Length = 203 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + ++++DV GV Y + P+ T L IG TL +R+D L Sbjct: 1 MIGFLRGKLAHKSPPFLMLDVNGVGYEVEAPMTTFYDLPAIGSEITLHTHLVVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ DR F L V GVG ++A+ +LS +A E I +++ + ++PG+ K Sbjct: 61 FGFSTEADRSMFRTLIKVNGVGPKLALTILSGQSAEEFHRCIHNNDTQALVRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ + L+ S S ++ + P AISAL +LGY A Sbjct: 121 AERLVIEMRDRLPDLTDSFDSGGTSVAGVDKIQPVNNPK--QEAISALCSLGYKPLDAGK 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V ++ + K+ D IIRLAL+ Sbjct: 179 MVQNISAEGKSCED---IIRLALQG 200 >gi|308049716|ref|YP_003913282.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica DSM 9799] gi|307631906|gb|ADN76208.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica DSM 9799] Length = 207 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + V+++ GV Y + P+ + L ++G +F +R+D L Sbjct: 1 MIGRLRGLLVEKAAPEVVLECGGVGYEVQLPMTSFYQLPELGSEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L GVG ++A+G+LS ++A + V+++ +N + ++PG+ K Sbjct: 61 YGFASKEERALFRELIKTNGVGPKMALGILSGMSAEQFVDAVQAENITGLTKLPGVGKKT 120 Query: 121 ASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E LK L + ++ N + + S P +AI+ALV LGY Sbjct: 121 AERLVVEMRDRLKNFGGPLLTPYADRLAGTNPTENTLVSAPDPEEDAIAALVALGYKAPA 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V V + Q+IR AL+A+ Sbjct: 181 ASKVVAKVAAPGMS---SEQLIRDALKAM 206 >gi|167837835|ref|ZP_02464718.1| Holliday junction DNA helicase motor protein [Burkholderia thailandensis MSMB43] Length = 193 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPHTGEKVMLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLGPL----AGAASPSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+L+L+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191 >gi|121535579|ref|ZP_01667386.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans Nor1] gi|121305819|gb|EAX46754.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans Nor1] Length = 201 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L D+ ++DV GV Y ++ P L G LF H+R+D + L Sbjct: 1 MIGYLRGTVVHLGVDHCILDVNGVGYRVFVPASGRQRL-VAGAQAALFTYLHVREDALLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F+LL V G+G + A+ +LS ++ ++ +N ++ +IPGI K Sbjct: 60 YGFHTQDEYELFLLLMDVSGIGPKAALNILSAVSPEGFRLAVSQKNVSLLTKIPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + S D A S A A+ A++ LGY + Sbjct: 120 AERIILELKDK-VGTSGETGGDAGLAATGSA---SAIDQADEALQAMLALGYSHAE---- 171 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAIS 206 V VLKK ++ A ++IRL LR + Sbjct: 172 VAPVLKKVRHEAQSVEELIRLVLREFT 198 >gi|124002681|ref|ZP_01687533.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134] gi|123991909|gb|EAY31296.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 22/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + +IDV GV Y I + T + L GD C L +R+D L Sbjct: 1 MFAYISGKLAHKEPTFAVIDVHGVGYQINISLNTYTALPISGD-CKLHTWLQVREDAQNL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F+LL SV G+GA A+ +LS ++ +E+ +I ++ K I I GI +K Sbjct: 60 YGFTELAEKKLFLLLISVSGIGANTALVMLSSMSVSEIQTAIASEDVKAIKSIKGIGLKT 119 Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ ELK K +I+++ QQ S V E A+ AL+ LGY + Sbjct: 120 AQRVILELKDKVQKEVGSIAVTPATQQ--SAVKDE-------------AVMALITLGYAK 164 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALR 203 + A V + K + N +I+ AL+ Sbjct: 165 NVAEKNVAKIFKTKGNDVKVEDVIKEALK 193 >gi|126174263|ref|YP_001050412.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155] gi|153000824|ref|YP_001366505.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185] gi|160875532|ref|YP_001554848.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195] gi|217973219|ref|YP_002357970.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223] gi|304408864|ref|ZP_07390485.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183] gi|307302867|ref|ZP_07582622.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175] gi|166200260|sp|A3D480|RUVA_SHEB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200261|sp|A6WNQ3|RUVA_SHEB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045769|sp|A9L3H8|RUVA_SHEB9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767386|sp|B8EA74|RUVA_SHEB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|125997468|gb|ABN61543.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155] gi|151365442|gb|ABS08442.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185] gi|160861054|gb|ABX49588.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195] gi|217498354|gb|ACK46547.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223] gi|304352685|gb|EFM17082.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183] gi|306913227|gb|EFN43649.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175] gi|315267720|gb|ADT94573.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS678] Length = 205 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LIDV GV Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGVLVEKQAPEILIDVNGVGYELQMPLTSFYELPEVNHETMVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K+ D +I+ AL+++ Sbjct: 181 KSVSAAYKEG---MDSETLIKAALKSM 204 >gi|167627795|ref|YP_001678295.1| Holliday junction DNA helicase RuvA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597796|gb|ABZ87794.1| Holliday junction DNA helicase, subunit A [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 218 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 12/213 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG+I +L+ +R+D +L Sbjct: 2 MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQVSLYTHFVVREDAQQL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +D++ F L V G+GAR A+ +LS + +T L+ I ++ ++A +PGI K Sbjct: 62 YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMS----CVNKEQAHICSMPSFAINAI-----SALVNLG 171 A R++ E+ K + +++ + S +N P+ N+I AL+ LG Sbjct: 122 AERLVVEIYDKLLKMANEIYSQSSNTSASINANSVQHAQTPAAISNSIFSESVDALLALG 181 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 Y Q A + + + A + IR AL+ Sbjct: 182 YKQKDAEKMIRGTIGESTTAA---EAIRKALQG 211 >gi|83749323|ref|ZP_00946320.1| RuvA [Ralstonia solanacearum UW551] gi|207742352|ref|YP_002258744.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum IPO1609] gi|83724001|gb|EAP71182.1| RuvA [Ralstonia solanacearum UW551] gi|206593742|emb|CAQ60669.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum IPO1609] Length = 193 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ V A M ++ ++AL+ LGY +A A Sbjct: 121 AERLLL-------ELKGKLGADLGAVPGGPA----MSDDTVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K+ S+ I+LAL+A+S Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191 >gi|285808235|gb|ADC35769.1| Holliday junction DNA helicase RuvA [uncultured bacterium 293] Length = 198 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +IDV GV Y + P+ T LG GD TL V TH+R+D I L Sbjct: 1 MIAQLTGRIARKEPQEAVIDVGGVGYRVTIPVSTFYRLGVDGDTITLRVHTHLREDTIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L +V VG ++A+ +LS I EL++++ + + +IPG+ K Sbjct: 61 FGFATASEHDLFEKLITVANVGPKLAVNILSGIETDELIQALRGGDLARLTRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + + +SALV+LGY + +A A Sbjct: 121 AERLVLELKDKMPKPGTAAAAPDAPPDGGAER--------EDVLSALVHLGYSRAEAERA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +E ++R LR++S Sbjct: 173 VERA-TREGGSHRFEDLLRQVLRSLS 197 >gi|293371094|ref|ZP_06617631.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f] gi|292633752|gb|EFF52304.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f] Length = 200 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYIRGELVELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176 A R++ +LK K + MS A + P+ A A+SAL LG+ Sbjct: 119 TAQRVIVDLKDK------IKTMGMSAAGGASAGLLLQPANAEVQEEAVSALTMLGFAAAP 172 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 + V+++LK+E + A ++I+LAL+ Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198 >gi|160882733|ref|ZP_02063736.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483] gi|156111903|gb|EDO13648.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483] Length = 200 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176 A R++ +LK K + MS A + P+ A A+SAL LG+ Sbjct: 119 TAQRVIVDLKDK------IKTMGMSAAGGVSAGLLLQPANAEVQEEAVSALTMLGFAAAP 172 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 + V+++LK+E + A ++I+LAL+ Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198 >gi|154707705|ref|YP_001423840.1| Holliday junction DNA helicase RuvA [Coxiella burnetii Dugway 5J108-111] gi|189045750|sp|A9KF41|RUVA_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154356991|gb|ABS78453.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111] Length = 200 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G I Y+L++V GV Y I P+ T L + L+ +R+D L Sbjct: 1 MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQKEILLYTHLIVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+ F L V GVG ++A+ +LS I E V ++ QN + +IPG+ K Sbjct: 61 YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E K LS D ++ S +AISAL+ LGY +A A Sbjct: 121 AERLVIETKD---GLSRWHTNDTPSPEGLRS---SNTQPTQDAISALMALGYKPQEAKRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + ++ K + + +IRLAL+ Sbjct: 175 IDAIQKPDLSA---ETLIRLALK 194 >gi|304396235|ref|ZP_07378117.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB] gi|304356604|gb|EFM20969.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB] Length = 204 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VL++ GV Y IY P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCFYELPELQHEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-------NAISALVNLGYG 173 A R++ E+K + + + A + PS A++ALV+LGY Sbjct: 121 AERLVVEMKDRFKGMHG------DLFGGDSAFTLTTPSAEPETNDAESEAVAALVSLGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ + V + + AD +IR ALRA Sbjct: 175 PQEASRMISKVGRPD---ADCETLIREALRA 202 >gi|317480654|ref|ZP_07939741.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36] gi|316903161|gb|EFV25028.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36] Length = 200 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G I L +ID G+ Y + + T + + GK C L+V +R+D Sbjct: 1 MIEYIRGGIAELSPATAVIDCNGLGYGVNISLNTYAAIQGK--KECKLYVYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177 A R++ +LK K I SV + + + S + + A++AL LG+ Q + Sbjct: 119 TAQRVIVDLKDK-IKTGSVATGNAGTI----GTLVSAANVQVQEEAVAALTMLGFAQAPS 173 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V+++LK+E + A Q+I+LAL+ Sbjct: 174 QKVVLAILKEEPS-APVEQVIKLALK 198 >gi|313679904|ref|YP_004057643.1| holliday junction DNA helicase subunit ruva [Oceanithermus profundus DSM 14977] gi|313152619|gb|ADR36470.1| Holliday junction DNA helicase subunit RuvA [Oceanithermus profundus DSM 14977] Length = 195 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + ED ++ + G+ + ++CP TL L ++G+ L +R+D + L Sbjct: 1 MVRFLEGVVLEATEDRAIVSLHGLGFEVFCPTGTLGRL-RVGETARLHTRLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +WF LL V GVG RVA+G+LS + A L +++ + K++ PG+ K+ Sbjct: 60 YGFHDPRLLEWFDLLVGVSGVGPRVALGLLSALPADLLGQAVTGDDPKLLTAAPGVGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + ++ + A I + A A +AL+ LG+ + Q A Sbjct: 120 AERIVLELKTR-------LPDHLAGLAPSAAPIEN--PAAGEAAAALITLGFRETQ-VHA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VV L ++ A ++IRLALR + Sbjct: 170 VVQKLAAKQPEAGAEELIRLALREL 194 >gi|253574942|ref|ZP_04852282.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon 786 str. D14] gi|251845988|gb|EES73996.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon 786 str. D14] Length = 206 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 2/172 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I L +YV++DVQGV Y ++CP + K + T++ H+R+D I L Sbjct: 1 MIDFLRGQIAHLETEYVVLDVQGVGYRVFCP-NPYAFAAKGQETVTIYTHHHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G RVA+G+LS + +V +I +N + ++PGI K Sbjct: 60 FGFPTREEQKLFRKLIEVSGIGPRVALGILSGGSPDHVVAAIHQENVSFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ +LK K + + + E P + A L LGY Sbjct: 120 AQRMILDLKDKLEGVGGTLFDPVPADVGETLGDDGNPGWP-EAREGLKALGY 170 >gi|317491787|ref|ZP_07950222.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920221|gb|EFV41545.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 204 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPEVLLEANGVGYEVHMPMTCFYELPELGQEVIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEREEVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L+ + + S + A P+ I+ A+SAL+ LGY + Sbjct: 121 AERLVVEMKDRFKGLTGDLFNNHSDLPVPAA---KKPASEIDAEGEAVSALIALGYKPQE 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A+ + + K + AD +IR ALRA Sbjct: 178 ASRMISKIAKPD---ADSETLIRDALRA 202 >gi|145640257|ref|ZP_01795841.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae R3021] gi|145274843|gb|EDK14705.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.4-21] Length = 181 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 13/184 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAHAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-------SMPSFAINAISALVNLGYG 173 A R++ ELKGK V Q D E HI S + AISAL+ LGY Sbjct: 121 AERLLVELKGK---FKGVKQSDFFV---ESTHIPLSPSIESHSESSSDEAISALIALGYK 174 Query: 174 QDQA 177 +A Sbjct: 175 PAEA 178 >gi|239978432|ref|ZP_04700956.1| Holliday junction DNA helicase RuvA [Streptomyces albus J1074] gi|291450328|ref|ZP_06589718.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074] gi|291353277|gb|EFE80179.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074] Length = 208 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V G+ + C TLS L ++G+ L +R+D + L Sbjct: 1 MIASVSGTVAALAPDSAVVEVGGIGMAVQCTPDTLSGL-RVGEQARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQSMLAVHHPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + Q V A ++ +ALV LGY +A A Sbjct: 120 AQKLLLELKDRLGAPRGATQAARPAVASGPA------PWSEQLHTALVGLGYAPREADDA 173 Query: 181 VVSVLKK-EKNIADD-----SQIIRLALRAIS 206 V +V + E +A+ Q++R AL++++ Sbjct: 174 VAAVTPQAEAALAEGGRPAVPQLLRAALQSLN 205 >gi|299148028|ref|ZP_07041091.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23] gi|298514211|gb|EFI38097.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23] Length = 200 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176 A R++ +LK K + MS A + P+ A A+SAL LG+ Sbjct: 119 TAQRVIVDLKDK------IKIMGMSAAGGASAGLLLQPANAEVQEEAVSALTMLGFAAAP 172 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 + V+++LK+E + A ++I+LAL+ Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198 >gi|220928772|ref|YP_002505681.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum H10] gi|254766954|sp|B8I1A3|RUVA_CLOCE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219999100|gb|ACL75701.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum H10] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 115/205 (56%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E D ++++ G+ Y I+ + T++ +G+ G ++ ++R+D L Sbjct: 1 MFAYIKGTVEEKNNDSIIVEAGGIGYRIFTALSTINNMGQNGTTVKIYTHYYVREDIAVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L +V GVG + A+ ++S ++ + +++ Q++K + + PGI MK+ Sbjct: 61 YGFGTVEELTMFEMLLTVSGVGPKAAISMISTLSPSRFYLAVVSQDTKSLTKAPGIGMKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K IS + + + E + S A+SAL+ LGYG +A++ Sbjct: 121 AQRIILDLKDK-ISKEQLTSS-IPMTSPENNEVTG-DSVLSEAVSALMVLGYGSAEASST 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + EK I+ + ++++ AL+++ Sbjct: 178 ISGIY--EKGISVE-ELVKKALKSL 199 >gi|167764704|ref|ZP_02436825.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC 43183] gi|167697373|gb|EDS13952.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC 43183] Length = 200 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L ID G+ Y + + T + + GK C L++ +R+D Sbjct: 1 MIEYIKGEIAELSPASATIDCNGLGYAVNISLNTYAAIQGK--KSCKLYIYEAIREDAYI 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AIN------AISALVNLGY 172 A R++ +LK K +C A + P+F A N A++AL LG+ Sbjct: 119 TAQRVIVDLKDKI----------KTCGMASGAVDITGPAFTAANAQVQEEAVAALTMLGF 168 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Q + V ++LK++ N A Q+I+LAL+ Sbjct: 169 AQAPSQKVVTAILKEDAN-APVEQVIKLALK 198 >gi|42523918|ref|NP_969298.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus HD100] gi|81616890|sp|Q6MKB7|RUVA_BDEBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|39576125|emb|CAE80291.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus HD100] Length = 196 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 18/208 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MIG ++G I + D LIDV GV Y I+ TL L +G+ +++ TH+R+D ++ Sbjct: 1 MIGYLRGKIIEVMNDSALIDVSGVGYEIHASSNTLGDLQALLGNDIIVWIHTHVREDALQ 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF ++ F+ L V GVG ++A+ +LS ++ E I N+K ++ +P + K Sbjct: 61 LFGFHDKEEKNLFLSLLKVNGVGPKMALSILSGGRPAQIHEMIEAGNAKALSGLPKVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYGQDQAT 178 A +I+ LKGK +S+ +E + S A I SAL+NLGY + Q Sbjct: 121 TAEQIILTLKGKLVSI------------EEGGVVAKAKSVAHTQITSALLNLGY-KSQLV 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 VS L + + D IR + +S Sbjct: 168 DQFVSSLPADIAVEDG---IRKGFQTLS 192 >gi|78188435|ref|YP_378773.1| Holliday junction DNA helicase RuvA [Chlorobium chlorochromatii CaD3] gi|90134727|sp|Q3ATE5|RUVA_CHLCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78170634|gb|ABB27730.1| Holliday junction DNA helicase subunit RuvA [Chlorobium chlorochromatii CaD3] Length = 204 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 5/190 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D +I++QGV Y T L G LF ++R+D + L Sbjct: 1 MYAYFRGTLISFTADEAIIELQGVAYHFLISATTSRQLPNSGSEVQLFAHLYVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +RQ F LL GVG ++A+ VLS + E+ ++I+ + + I G+ K Sbjct: 61 YGFYSEEERQLFRLLLQASGVGPKLALSVLSGLPVHEVHDAIVSNIPERLYGISGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + LS V + + H + +AI+ALV LG+ + A Sbjct: 121 AARIILELRDKILKLSPV----LPTATARRPHNAAQ-QLRDDAITALVTLGFPRAAAQKT 175 Query: 181 VVSVLKKEKN 190 V S+L + N Sbjct: 176 VTSLLDENSN 185 >gi|167766364|ref|ZP_02438417.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1] gi|167711955|gb|EDS22534.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1] Length = 190 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 6/189 (3%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++D G+ Y + P+R S KIG ++ H+R+D + LFGFLS +++ F LL Sbjct: 6 VVVDNHGIGYQMMVPMRGES-FPKIGQEIKIYTHMHVREDDVSLFGFLSKEEKEAFELLI 64 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 V G+G +V + VLS ++ EL ++I ++ K I++ PG+ K A +++ ELK K +S Sbjct: 65 GVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKGAKKLILELKDK-LSFE 123 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 +++D S S I I LV+LGY + +A AV V + K++ + + Sbjct: 124 E-LEEDGVGAEIFDTSADSSDSVMIT-IEGLVSLGYSKSEAAIAVNKV-EDAKDLTPE-E 179 Query: 197 IIRLALRAI 205 +++ AL+ I Sbjct: 180 LLKKALKNI 188 >gi|167564063|ref|ZP_02356979.1| Holliday junction DNA helicase motor protein [Burkholderia oklahomensis EO147] gi|167571207|ref|ZP_02364081.1| Holliday junction DNA helicase motor protein [Burkholderia oklahomensis C6786] Length = 193 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L + L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTSEKVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++ALV LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLGPL----AGAASPSDHATDILNALVALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+L+L+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191 >gi|58425878|gb|AAW74915.1| holliday junction binding protein, DNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 212 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 77/137 (56%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 19 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 79 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 138 Query: 121 ASRIMTELKGKAISLSS 137 A R++ EL+ +A SS Sbjct: 139 AERMVVELRDRAADFSS 155 >gi|160896673|ref|YP_001562255.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1] gi|229560027|sp|A9BUG7|RUVA_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160362257|gb|ABX33870.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1] Length = 190 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G +L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCGGVGYEVQVPMSTFYNLPASGAKVSLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + G+G R+A+ VLS ++ +L +++ LQ + ++PGI K Sbjct: 61 YGFGTHSERQAFRELIKITGIGPRMALSVLSGMSVEDLAQAVTLQEVGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK I + Q VN +Q I + AL+ LGY A A Sbjct: 121 AERLLLELKGK-IGADTGAQS--LFVNNDQNDI----------VQALMALGYSDKDAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LKK ++ I+LAL+A++ Sbjct: 168 ----LKKLPPDVGVTEGIKLALKALA 189 >gi|84623202|ref|YP_450574.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899002|ref|YP_200300.2| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577435|ref|YP_001914364.1| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae PXO99A] gi|90146231|sp|Q5H2A6|RUVA_XANOR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123725563|sp|Q2P577|RUVA_XANOM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560139|sp|B2STK2|RUVA_XANOP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84367142|dbj|BAE68300.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521887|gb|ACD59832.1| holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae PXO99A] Length = 194 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 77/137 (56%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ EL+ +A SS Sbjct: 121 AERMVVELRDRAADFSS 137 >gi|300770096|ref|ZP_07079975.1| crossover junction ATP-dependent DNA helicase RuvA [Sphingobacterium spiritivorum ATCC 33861] gi|300762572|gb|EFK59389.1| crossover junction ATP-dependent DNA helicase RuvA [Sphingobacterium spiritivorum ATCC 33861] Length = 194 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 11/188 (5%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +V++DV G+ Y I+ + T S + K + C LF+ +R+D LFGF ++ +RQ F L Sbjct: 16 HVVLDVNGIGYYIHISLNTFSLI-KDQENCKLFISFQVREDSQTLFGFANEGERQLFEHL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV G+G +LS IT E+ +II VI +I GI K A R++ EL+ K Sbjct: 75 ISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKTAQRLILELQDK---- 130 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + +Q + A S+P A+SAL+ LG+ ++QA + +++ E +++ + Sbjct: 131 --LKKQGPDALISPVASKQSVPE---EALSALIMLGFVKNQAEKVLNTIINTEPDLSVE- 184 Query: 196 QIIRLALR 203 Q+I+LAL+ Sbjct: 185 QLIKLALK 192 >gi|331269238|ref|YP_004395730.1| Holliday junction DNA helicase RuvA [Clostridium botulinum BKT015925] gi|329125788|gb|AEB75733.1| Holliday junction DNA helicase RuvA [Clostridium botulinum BKT015925] Length = 200 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 99/185 (53%), Gaps = 5/185 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG L +DY++++ + Y IY T++ + I + +++E +R+D I + Sbjct: 1 MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F LL ++ GVG++ A+ +LS L +SI+ ++ K++ + PGI KI Sbjct: 61 YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVCSLKKSILSEDYKMLTKAPGIGKKI 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI ELK K + +++D N + A+ AL+ LG+ Q +A Sbjct: 121 AQRITLELKDKIEKIYEDSLEEDNDIDNLSKNSTRKYDE----ALEALIALGFSQKEAEK 176 Query: 180 AVVSV 184 A+ + Sbjct: 177 ALKDI 181 >gi|294628363|ref|ZP_06706923.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14] gi|292831696|gb|EFF90045.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14] Length = 201 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 15/202 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +I+V GV + C TLS L +IG L +R+D + L Sbjct: 1 MIAFVSGAVAALAPDTAVIEVGGVGMAVQCTPNTLSTL-RIGQPAKLHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +++ ELK + A + V ++ ++Q H +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGAPVGAPAVGAPVTQGWRDQLH------------AALIGLGYATREAD 167 Query: 179 TAVVSVLKKEKNIADDSQIIRL 200 AV +V + + Q+ +L Sbjct: 168 EAVAAVTPQAEAAGGAPQVGQL 189 >gi|304436498|ref|ZP_07396472.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370544|gb|EFM24195.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 199 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG + DY L+DV V Y ++ +T + + + L++ T++R+D I L Sbjct: 1 MIGFLKGKATHITSDYCLLDVHDVGYRVFISNQTRAHISPSAE-VMLYIHTNVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F+ L + G+G +VA G+LS T + + ++ K I ++PGI K Sbjct: 60 YGFFSREEYDLFLHLIGISGIGPKVAQGILSSATVNDFYRMVQQKDVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ ELK K +S++ + + D + K + S A AL+ LG+ QD Sbjct: 120 AERILLELKDKLSDVSVADLPEGDNNVGTKTEN------SMIAEATEALLTLGF-QD--- 169 Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202 + + V ++ + + ++IR AL Sbjct: 170 SEIQRVFRQRHSCQNTEELIRYAL 193 >gi|21232455|ref|NP_638372.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767461|ref|YP_242223.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris str. 8004] gi|188990567|ref|YP_001902577.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris str. B100] gi|325921870|ref|ZP_08183684.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC 19865] gi|24212373|sp|Q8P6E5|RUVA_XANCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81306559|sp|Q4UXM0|RUVA_XANC8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560138|sp|B0RPY4|RUVA_XANCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|21114237|gb|AAM42296.1| holliday junction binding protein, DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572793|gb|AAY48203.1| holliday junction binding protein, DNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167732327|emb|CAP50519.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris] gi|325547651|gb|EGD18691.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC 19865] Length = 194 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 77/137 (56%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ EL+ +A SS Sbjct: 121 AERMVVELRDRAADFSS 137 >gi|313895598|ref|ZP_07829154.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137 str. F0430] gi|312975724|gb|EFR41183.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137 str. F0430] Length = 198 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + D+ L+DV V Y ++ +T + + + G+ L++ TH+R+D I L Sbjct: 1 MIGFLRGTVVHSAVDHCLLDVHDVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L + G+G + A +LS +T + I +N K I ++PGI K Sbjct: 60 YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKNVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D S V + + S A AL++LG+ Q++ T Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAVVSDVS-----DSMLAEATEALMSLGFQQNEIQT- 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V + + + +++R AL Sbjct: 174 ---VFQGKTDYQSTEELVRYAL 192 >gi|255320811|ref|ZP_05361986.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens SK82] gi|262379413|ref|ZP_06072569.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens SH164] gi|255302188|gb|EET81430.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens SK82] gi|262298870|gb|EEY86783.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens SH164] Length = 200 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 110/205 (53%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L V GVG ++A+G+LS ++ LV +I + + +IPG+ K Sbjct: 60 YGFSNAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDLNTLVKIPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ + + + Q I + P A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKTLAQAATTSSTALPQIQ-FIANSP--IAEAEAALQSLGYKPQEAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + + ++ + +IR AL+++ Sbjct: 177 VAAV---KGDFSESADLIRAALKSM 198 >gi|257095744|ref|YP_003169385.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048268|gb|ACV37456.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 191 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + V++DV G+ Y + P+ T L G+ +L +R+D L Sbjct: 1 MIGRLSGILLEKNPPQVVLDVHGIGYELDVPMSTFYNLPANGEQVSLLTHFVVREDGQFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +R F L + GVGAR+A+ VLS ++ ++L + + Q + ++PGI K Sbjct: 61 YGFASEPERFAFRQLLKISGVGARLALSVLSGLSVSDLAQVVARQEVGRLTKVPGIGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK L+ + ++ + ++ I ++AL+ LGY D+ A Sbjct: 121 AERLLLELKGK---LADALPASIAPADGARSDI----------LNALLALGY-NDREAAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +L E +D IR AL+ +S Sbjct: 167 AMKLLPDETTTSDG---IRQALKLLS 189 >gi|86134376|ref|ZP_01052958.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp. MED152] gi|85821239|gb|EAQ42386.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp. MED152] Length = 193 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V+ID GV Y+++ + T S L + + L+ +R D L Sbjct: 1 MITQVRGRLVEKSPTEVVIDCNGVGYLLHISLNTFSGLPE-DENVVLYTHLSIRDDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R+ F LL SV GVG +A + S +T+ E+ ++I +N VI + GI K Sbjct: 60 FGFINKTEREVFKLLISVSGVGPSIARTMCSSMTSDEIQQAIASENVAVIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + +S N + A+SAL LG+ + Q+ Sbjct: 120 AQRVIVDLKDKILKTFNIDEVSVSASNTNKDE----------ALSALEVLGFNRKQSDKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VLK + A II+LAL+ + Sbjct: 170 VNTVLKANPD-ASVENIIKLALKNL 193 >gi|166712990|ref|ZP_02244197.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|289661899|ref|ZP_06483480.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669612|ref|ZP_06490687.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 194 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 77/137 (56%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ EL+ +A SS Sbjct: 121 AERMVVELRDRAADFSS 137 >gi|147669064|ref|YP_001213882.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. BAV1] gi|146270012|gb|ABQ17004.1| Holliday junction DNA helicase subunit RuvA [Dehalococcoides sp. BAV1] Length = 194 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 12/184 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + + P + + +G +G +F H+R+D + L Sbjct: 1 MISSLNGILEASGKDWAVINVSGVGFRCHMPATSSALIGGLGQRVRVFTHLHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 +SRI+ ELK D N E + + + ++ L LGY +A A Sbjct: 121 SSRIILELK------------DKIAKNWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168 Query: 181 VVSV 184 + S+ Sbjct: 169 ISSL 172 >gi|264680422|ref|YP_003280332.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2] gi|262210938|gb|ACY35036.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2] Length = 191 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L + G+G R+A+ VLS ++ +L +++ Q + + ++PGI K Sbjct: 61 FGFGTARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + Q + N +Q I AL+ LGY +A+ A Sbjct: 121 AERLLLELKGKIGADTGA--QSLFANNNDQNDIQ----------QALMALGYSDKEASAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LKK S+ I+LAL+A++ Sbjct: 169 ----LKKLPPDVGVSEGIKLALKALT 190 >gi|311739557|ref|ZP_07713392.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305373|gb|EFQ81441.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 4/202 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +ID GV Y +TL L + G+ T+ +++D + L Sbjct: 1 MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGGEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + + V+ A + + AL+ LG+ D+ Sbjct: 120 AQRLALELKDKVAAFAPSEAAAAGSVDTAVAPAGG--AVVESVTEALIGLGF-TDKGARP 176 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 VV + AD S ++R AL Sbjct: 177 VVESAYADNPDADTSSLLRAAL 198 >gi|218768952|ref|YP_002343464.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis Z2491] gi|20455265|sp|Q9JSM5|RUVA_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|121052960|emb|CAM09314.1| Holliday junction DNA helicase [Neisseria meningitidis Z2491] gi|254671573|emb|CBA09225.1| holliday junction DNA helicase [Neisseria meningitidis alpha153] gi|319411250|emb|CBY91657.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis WUE 2594] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGY 172 A R++ EL+GK + AH + FA + + L+ LGY Sbjct: 121 AERMVLELRGKLV-----------------AHAVTDGLFAAAPAADETEDIVGTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A AV V + D + +RLAL+ Sbjct: 164 SEREAKAAVKGVPEG----TDVGEGVRLALK 190 >gi|332184195|gb|AEE26449.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida 3523] Length = 216 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQISLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAI-----SALVNLG 171 A R++ E+ K + +++ + S QA P+ N+I AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQSSGTKVANLDSQAPQVPTPTVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + A ++IR AL+ Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209 >gi|225077350|ref|ZP_03720549.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens NRL30031/H210] gi|224951342|gb|EEG32551.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens NRL30031/H210] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 29/211 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+ID+ GV Y ++T L IG+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDINGVGYEADVSMQTFYNLPPIGETVHLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL ++I ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--------ISALVNLGY 172 A R++ EL+GK +S H S FA A I+ L+ LGY Sbjct: 121 AERMVLELRGKLVS-----------------HTVSDGLFAPAAVADESQDIINTLLALGY 163 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + +A A + K + + +RLAL+ Sbjct: 164 NEREAKAATKGIPKG----TEVGEGVRLALK 190 >gi|83719212|ref|YP_441795.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis E264] gi|167580615|ref|ZP_02373489.1| Holliday junction DNA helicase motor protein [Burkholderia thailandensis TXDOH] gi|167618721|ref|ZP_02387352.1| Holliday junction DNA helicase motor protein [Burkholderia thailandensis Bt4] gi|257137961|ref|ZP_05586223.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis E264] gi|123753836|sp|Q2SZ54|RUVA_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83653037|gb|ABC37100.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis E264] Length = 193 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPRILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLGPL----AGAASPSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+L+L+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191 >gi|119356229|ref|YP_910873.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides DSM 266] gi|166230538|sp|A1BDH2|RUVA_CHLPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119353578|gb|ABL64449.1| Holliday junction DNA helicase subunit RuvA [Chlorobium phaeobacteroides DSM 266] Length = 200 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG++ + +IDV GV Y + T L G L+ +R+D ++L Sbjct: 1 MFAYFKGSLVTALPEEAVIDVSGVAYRMLISATTFRQLPDEGSQVLLYAHLSVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LL GVG ++A+ VLS + E+ E+I+ + + + G+ K Sbjct: 61 YGFFKEEERQLFRLLLLTSGVGPKLALAVLSGLQVPEVHEAIMANEPERLYGVSGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A+RI+ EL+ K + L V A +MPS + +A+ ALV LG+ + A Sbjct: 121 AARIILELRDKILKLPLVTP---------AAGKAAMPSHHVKDDAVHALVTLGFSRLLAQ 171 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A VS L +EK ++I+ AL I Sbjct: 172 KA-VSALLEEKPEQSVEEVIKYALATI 197 >gi|312797266|ref|YP_004030188.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI 454] gi|312169041|emb|CBW76044.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI 454] Length = 193 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L GD TL + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPGTGDKITLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +RQ F L + G+GAR+A+ VLS ++ ++L +++ Q++ + ++PGI K Sbjct: 61 YGFLTQQERQTFRELLKISGIGARMALAVLSGMSVSDLAQTVTQQDTARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + P + AL++LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADIGAAASAASSSDHAPDI----LHALLSLGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V ++D I+LAL+A+S Sbjct: 170 IKNV-PAGTGVSDG---IKLALKALS 191 >gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum seropedicae SmR1] gi|300072547|gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 24/210 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D QGV Y + P+ T L +G+ TL +R+D L Sbjct: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + GVGAR A+ +LS ++ +L +++ LQ + + ++PGI K Sbjct: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ELKGK +++ VV D S + ++AL+ LGY + Sbjct: 121 AERLLLELKGKLGADLGAVAGVVHSDASA----------------DILNALLALGYSDKE 164 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AT A+ V K+ ++D I+LAL+A+S Sbjct: 165 ATLAMKQV-PKDSTVSDG---IKLALKALS 190 >gi|167586148|ref|ZP_02378536.1| Holliday junction DNA helicase motor protein [Burkholderia ubonensis Bu] Length = 193 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLSPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++AL+ LGY + + A Sbjct: 121 AERLLL-------ELKGKLGADLGTL----AGAASPSDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|329957833|ref|ZP_08298308.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056] gi|328522710|gb|EGF49819.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056] Length = 200 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L +ID G+ Y + T + + GK C L++ +R+D Sbjct: 1 MIEYIKGEIAELSPASAIIDCNGLGYAANISLNTYAAIQGK--KSCKLYIYEAIREDAYI 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ +LK K I +V A + A++AL LG+ Q + Sbjct: 119 TAQRVIVDLKDK-IKTGGMVSGAADITGP--AFTAANAQVQEEAVAALTMLGFAQAPSQK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V+++LK++ N A Q+I+LAL+ Sbjct: 176 VVMAILKEDAN-APVEQVIKLALK 198 >gi|323692211|ref|ZP_08106454.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14673] gi|323503785|gb|EGB19604.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14673] Length = 203 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D ++++ V IY P+ L L +G+ ++ +R+D + L Sbjct: 1 MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L V G+G + A+G+LS ++ +L +I+ ++K I++ PG+ K Sbjct: 61 YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120 Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ +LK K + L+SV +E+ + M A +ALV LGY +A Sbjct: 121 AQRIILDLKEKVSAEEMLASVAD------TEERTSVPLMQEAGREAATALVALGYSNLEA 174 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + AV +V E D ++R +L+ ++ Sbjct: 175 SKAVKNVQITED--MDAEAVLRASLKYLA 201 >gi|212690798|ref|ZP_03298926.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855] gi|237708184|ref|ZP_04538665.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA] gi|212666675|gb|EEB27247.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855] gi|229457737|gb|EEO63458.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA] Length = 197 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I + V++D G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAIQNQSN-TKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + VN E + AISAL LG+ Q A+ Sbjct: 120 AQRIIVDLKDK------IATSGVETVNSEMFANPANTEIHDEAISALTMLGFAQ-AASQK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 VV+ + KE+ A ++I+LAL+ Sbjct: 173 VVAAILKEEPAAPVEKVIKLALK 195 >gi|149910565|ref|ZP_01899204.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36] gi|149806408|gb|EDM66381.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36] Length = 206 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETH--MRQDQ 57 MIG+++G + +L+DV GV Y I P +SC ++GD + V TH +R+D Sbjct: 1 MIGRLRGTLLEKQPPEILLDVNGVGYEIKLP---MSCFYELGDVDKEVIVYTHFVVREDA 57 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++R F L V GVG ++ + +LS +TA + + + + ++PG+ Sbjct: 58 QLLYGFNNKMERLMFRELIKVNGVGPKLGLAILSGMTANQFAHCVEHDDINSLIKLPGVG 117 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI----SALVNLGYG 173 K A R++ E++ + L + V QD+ ++A + + A NAI AL+ LGY Sbjct: 118 KKTAERLLVEMRDR---LKNWVTQDLFTPEADKAQLQGYGNTASNAIEEAEEALIGLGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 Q + V + + +IIRL+LRA Sbjct: 175 PAQVAKMIKQVAQPSMSC---EEIIRLSLRA 202 >gi|17545220|ref|NP_518622.1| Holliday junction DNA helicase motor protein [Ralstonia solanacearum GMI1000] gi|20455245|sp|Q8Y235|RUVA_RALSO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|17427511|emb|CAD14029.1| probable holliday junction dna helicase ruva protein [Ralstonia solanacearum GMI1000] Length = 193 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVALLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ V A + A++ ++AL+ LGY +A A Sbjct: 121 AERLLL-------ELKGKLGADLGTVPGGPA----VSDDAVDVLNALLALGYSDKEAAQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K+ S+ I+LAL+A+S Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191 >gi|293603639|ref|ZP_06686060.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter piechaudii ATCC 43553] gi|292818075|gb|EFF77135.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter piechaudii ATCC 43553] Length = 190 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +DV G+ Y I + TL L + G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKLPPTICVDVGGLGYDIDVSMTTLYSLPETGARVTLYTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ +L ++I LQ S + ++PGI K Sbjct: 61 YGFGTAGERSAFRELIKVSGIGARTALSVLSGMSVADLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + D+ + + P + ++AL+ LGY + ++ Sbjct: 121 AERLLLEMRGK-------LGADIGAASH------ATPDHQSDILNALLALGYSEKES--- 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +S LK S I+ AL+A++ Sbjct: 165 -LSALKGLPEGVGVSDGIKQALKALA 189 >gi|77163677|ref|YP_342202.1| DNA recombination protein, RuvA [Nitrosococcus oceani ATCC 19707] gi|254435109|ref|ZP_05048616.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27] gi|90135436|sp|Q3JES4|RUVA_NITOC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76881991|gb|ABA56672.1| Holliday junction DNA helicase subunit RuvA [Nitrosococcus oceani ATCC 19707] gi|207088220|gb|EDZ65492.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27] Length = 199 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L+DVQGV Y + P+ T L +G L+ +R D L Sbjct: 1 MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F S+ +R F L V GVGA++ +G+LS I A + ++ + ++PG+ K Sbjct: 61 YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + + ++ + ++ S P A+SALV LGY ++A+ A Sbjct: 121 AERLIVEMRDRLLDMP---ESGVAGMRPDRVD-GSAPGTVAEAVSALVALGYKPNEASRA 176 Query: 181 V 181 V Sbjct: 177 V 177 >gi|21243875|ref|NP_643457.1| Holliday junction DNA helicase RuvA [Xanthomonas axonopodis pv. citri str. 306] gi|294626863|ref|ZP_06705455.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665404|ref|ZP_06730692.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|24212375|sp|Q8PHV0|RUVA_XANAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|21109477|gb|AAM37993.1| holliday junction binding protein DNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|292598877|gb|EFF43022.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604815|gb|EFF48178.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 194 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--PSFAINAISALVNLGYGQDQAT 178 A R++ EL+ +A SS A I P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSS------------GAPITGQLGPDAVSEATVALQQLGYKPAEAA 168 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + +A +IR AL+A Sbjct: 169 RMARDAGAEGDEVA---TVIRKALQA 191 >gi|325267123|ref|ZP_08133791.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella denitrificans ATCC 33394] gi|324981361|gb|EGC17005.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella denitrificans ATCC 33394] Length = 194 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 19/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + ++IDVQGV Y + ++T L G+ L+ + +R+D L Sbjct: 1 MIGRLHGILAEKQPPQIVIDVQGVGYEVEVSMQTFYTLPAAGEAVRLYTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS +++ EL +++ ++ K ++ +PGI K Sbjct: 61 FGFADAGERATFRQLIKVSGIGAKTALGILSALSSDELAQAVAQEDVKRLSSVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK S+ + ++ + + L+ LGY + +A A Sbjct: 121 AERMILELRGKLAGSSAADTALFAAAAQDSRQ---------DVVQTLMALGYSEKEAQAA 171 Query: 181 VVSVLKKEKNIADDSQI---IRLALR 203 K++ DD ++ +R AL+ Sbjct: 172 C-------KSLPDDVEVGEGVRQALK 190 >gi|188533631|ref|YP_001907428.1| Holliday junction DNA helicase RuvA [Erwinia tasmaniensis Et1/99] gi|229560030|sp|B2VJ94|RUVA_ERWT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188028673|emb|CAO96535.1| Holliday junction ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99] Length = 204 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y + P+ L I +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPVVLIEASGVGYEVQMPMTCFYELPDIQHEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+K + + D+ + A MP N A++AL LGY Sbjct: 121 AERLVVEMKDRFKGMHG----DLFASDAPFALTSEMPKETANDAEGEAVAALTALGYKPQ 176 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ +V V K + AD +IR ALRA Sbjct: 177 EASRMIVKVGKPD---ADCETLIREALRA 202 >gi|257055537|ref|YP_003133369.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora viridis DSM 43017] gi|256585409|gb|ACU96542.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora viridis DSM 43017] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + D+ +I+V GV + + TL L + G L+ +R+D + L Sbjct: 1 MISSIRGEVLAVGLDHAVIEVGGVGFTVQATPTTLGTL-RRGTEARLYTTLMVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF R+ F LLQ+V G+G R+AM L+ + +L ++ + + Q+PGI K Sbjct: 60 FGFADVESRELFGLLQTVSGIGPRLAMAALAVLEPEKLRRALADGDITTLTQVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V M + + ++ALV LG+ QA A Sbjct: 120 AERLIIELRDK-------VSAPMGGEPAPDEGTTVGSAVRADVVAALVGLGFSAKQAEQA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V V + N D SQ++R AL Sbjct: 173 VDKVSGEVPN--DTSQVLRAAL 192 >gi|219849021|ref|YP_002463454.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM 9485] gi|254766951|sp|B8GCH4|RUVA_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219543280|gb|ACL25018.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM 9485] Length = 195 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I+ + DY++++ G+ ++IY P TLS G +G L +R+D + L Sbjct: 1 MIASIRGVIQSIGNDYLIVETGGIGFLIYAPRSTLSAAGAVGSDIFLHTILIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R F L V GVG ++A+ +LS T E+ I + +A++PGI K Sbjct: 61 YGFSDNAQRSLFEQLIGVSGVGPKLALSLLSSGTPDEVRSMIAGGDVARLARVPGIGKKT 120 Query: 121 ASRIMTELKGKA--ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ EL+GK L++ +S +++E + I LV+LGY +A Sbjct: 121 AERIVLELRGKIDFRQLAASGSTSVSALDRELSEI-------------LVSLGYSAAEAA 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 A+ S+ ++ +RLALR Sbjct: 168 AAIASLPSDAPPTLEER--LRLALR 190 >gi|190575569|ref|YP_001973414.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia K279a] gi|254522833|ref|ZP_05134888.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14] gi|229560132|sp|B2FRN6|RUVA_STRMK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190013491|emb|CAQ47126.1| putative Holliday junction DNA helicase [Stenotrophomonas maltophilia K279a] gi|219720424|gb|EED38949.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14] Length = 197 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 78/137 (56%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L ++G TL+ ++D + L Sbjct: 1 MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E + + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ EL+ +A + Sbjct: 121 AERMVLELRDRAAQFGA 137 >gi|329961622|ref|ZP_08299681.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057] gi|328531614|gb|EGF58448.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057] Length = 200 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G I L +ID G+ Y + + T + + GK C L++ +R+D Sbjct: 1 MIEYIRGGIAELSPATAVIDCNGLGYAVNISLNTYAAIQGK--KECKLYIYEAIREDAYI 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ +ELV I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPSELVNVISTENANLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177 A R++ +LK K I S D + + + + I A++AL LG+ Q + Sbjct: 119 TAQRVIVDLKDK-IKTGSAAAGDTGTI----GGLLTAANAQIQEEAVAALTMLGFAQAPS 173 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V+ +LK++ + A Q+I+LAL+ Sbjct: 174 QKVVLGILKEDPD-ASVEQVIKLALK 198 >gi|241662010|ref|YP_002980370.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D] gi|240864037|gb|ACS61698.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D] Length = 193 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ V A + A++ ++AL+ LGY +A A Sbjct: 121 AERLLL-------ELKGKLGADLGAVPGGPA----VSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K+ S+ I+LAL+A+S Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191 >gi|284039351|ref|YP_003389281.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74] gi|283818644|gb|ADB40482.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74] Length = 198 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V+IDV GV Y ++ ++T + L GD LF+ R+D L Sbjct: 1 MIAYLDGTLSHKEATHVIIDVHGVGYSVHISLQTYAVLPGGGDRIKLFIHHLFREDSQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ L V GVG A+G+LS + +L +I+ +N + + I GI K Sbjct: 61 YGFANADEKSLFLDLIGVSGVGPNTALGMLSAMQPGDLRLAILGENVRAVQAIKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K + + VV S + A+ S A ALV LG+ + A + Sbjct: 121 AQRIILELRDK-MKRAGVVPDGPSYRQQAAANPVREESLA-----ALVALGFPKPTAEKS 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V LK + ++ + +IR ALR Sbjct: 175 VDDALKADPALSVED-VIRRALR 196 >gi|78048836|ref|YP_365011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325929365|ref|ZP_08190495.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans 91-118] gi|90146217|sp|Q3BQF2|RUVA_XANC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78037266|emb|CAJ25011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540277|gb|EGD11889.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans 91-118] Length = 194 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--PSFAINAISALVNLGYGQDQAT 178 A R++ EL+ +A SS A I P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSS------------GAPITGQLGPDAVSEATVALQQLGYKPAEAA 168 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + +A +IR AL+A Sbjct: 169 RMARDAGAEGDEVA---TVIRKALQA 191 >gi|237723715|ref|ZP_04554196.1| holliday junction DNA helicase ruvA [Bacteroides sp. D4] gi|265756839|ref|ZP_06090827.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA] gi|229437926|gb|EEO48003.1| holliday junction DNA helicase ruvA [Bacteroides dorei 5_1_36/D4] gi|263233625|gb|EEZ19245.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA] Length = 197 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I + V++D G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAIQNQSN-TKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + VN E + A+SAL LG+ Q A+ Sbjct: 120 AQRIIVDLKDK------IATSGVETVNSEMFANPANTEIHDEAVSALTMLGFAQ-AASQK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 VV+ + KE+ A ++I+LAL+ Sbjct: 173 VVAAILKEEPAAPVEKVIKLALK 195 >gi|19704439|ref|NP_604001.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328207|ref|ZP_06870738.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22001978|sp|Q8REJ7|RUVA_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|19714701|gb|AAL95300.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154719|gb|EFG95505.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 194 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 1/145 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ L++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKLYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145 A I+ +LKGK +L+ ++ +S Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM 144 >gi|262384145|ref|ZP_06077281.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B] gi|262295043|gb|EEY82975.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B] Length = 196 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T S G +++ +R+D L Sbjct: 1 MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R+ F+LL SV GVG A +LS + +ELV+ I +N + + GI +K Sbjct: 60 FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S+ N +A I S + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPMESMAG------NLPEASI-SNGAVTEEAVAALVMLGFQKAASQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++LK +A + Q+I+ ALR Sbjct: 173 VSAILKGSPTLAVE-QVIKTALR 194 >gi|260890744|ref|ZP_05902007.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254] gi|260859622|gb|EEX74122.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254] Length = 211 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 DYV +D+ G+ Y +Y ++T L IG+ L+V T++++D I L+GF + +R+ F Sbjct: 15 DYVALDINGLAYKVYVSLKTFEKLDNIGNDEKLYVYTNVKEDDISLYGFKTQNERELFKA 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG--KA 132 L S+ GVG ++ + +LS E+++ + SK+ ++PG+ +K A +I+ +LK K Sbjct: 75 LISISGVGPKLGIAILSTFNTREIIDIVNENESKIFTRVPGLGIKKAQKIILDLKDKVKK 134 Query: 133 ISLSSVVQQ 141 + L+ +++ Sbjct: 135 LDLTETIEE 143 >gi|294789135|ref|ZP_06754374.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC 29453] gi|294482876|gb|EFG30564.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC 29453] Length = 195 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++IDV GV Y + ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLRGTLIDKTPPQIVIDVNGVGYEVDVSMQTFYALPALGETVQLYTQLAVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS ++ +L +I ++ K ++ P + K Sbjct: 61 FGFADLAERATFRQLVKVSGIGAKTALGILSALSPDDLAAAIASEDVKKLSSAPSVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +++S ++ D+ H + + + +S L+ LGY + ++ A Sbjct: 121 AERMILELRGK-LTVSGSLKDDL-------LHATASVDNSEDVVSTLLALGYNEKESRLA 172 Query: 181 VVSVLKKEKNIADD---SQIIRLALR 203 V K +A D S+ ++LAL+ Sbjct: 173 V-------KGLAADVDVSEGVKLALK 191 >gi|124268420|ref|YP_001022424.1| Holliday junction DNA helicase RuvA [Methylibium petroleiphilum PM1] gi|166230565|sp|A2SKV0|RUVA_METPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|124261195|gb|ABM96189.1| holliday junction DNA helicase [Methylibium petroleiphilum PM1] Length = 192 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 19/208 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+G++ G + VLIDV GV Y + P+ + L IG+ TL +R+D L Sbjct: 1 MLGRLTGLLAEKSPPQVLIDVGGVGYEVDVPMSSFFNLPAIGEKVTLLTHFVVREDAQVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F +L + GVG R A+ +LS +T +L +++ Q++ + ++PGI K Sbjct: 61 FGFLTAPERETFRMLIKISGVGPRTALSILSGLTVGDLAQAVTAQDASRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--ISALVNLGYGQDQAT 178 A R++ L + D+ I P+ A + AL+ LGY + +A Sbjct: 121 AERLLL-------ELKGKLGADLGPA------IGGKPASDAQADILQALIALGYSEREAQ 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A V L E ++D I+LAL+A++ Sbjct: 168 AA-VKALPAEVGVSDG---IKLALKALA 191 >gi|71279553|ref|YP_268842.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H] gi|90134812|sp|Q483C5|RUVA_COLP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71145293|gb|AAZ25766.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H] Length = 211 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 112/213 (52%), Gaps = 11/213 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+ GV Y + P+ ++ L ++ T++ +R+D L Sbjct: 1 MIGRLRGMLVEKNSPEILIECAGVGYEVTMPMTSIYALPELEQQATIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R+ F LL V GVG ++A+ +LS ++A + V + + I +IPG+ K Sbjct: 61 YGFANKVERKLFRLLIKVNGVGPKLALAILSNMSADQFVSCVRHDDISAIVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAI----NAISALVNLGY 172 A R++ E++ + + +V D + A + +F +AI+AL++LGY Sbjct: 121 AERLLIEMRDRLKDWQAQQIHLVSDDGVIPEQLSAELSQETTFVNDNKGDAINALLSLGY 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 Q QA AV SV + + IIR AL+++ Sbjct: 181 KQVQADKAVKSVYNRGMS---SENIIRDALKSM 210 >gi|87118957|ref|ZP_01074855.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121] gi|86165348|gb|EAQ66615.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121] Length = 199 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DV GV Y + + T L IG+ TL+ +++D L Sbjct: 1 MIGRLVGYLVEKVPPELMLDVNGVGYELTASMTTFYELPAIGEKVTLYTHFQVKEDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA--QIPGISM 118 + F +R F +L V GVG ++A+ VLS +++ EL+ ++ Q+S V A +IPG+ Sbjct: 61 YAFKQKDERALFRILIKVNGVGPKMALSVLSSMSSDELIANV--QDSDVTALTRIPGVGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ EL+ K L +QD+ + + + P A +ALV+LGY +A Sbjct: 119 KTAERLIIELRDK---LGQAAKQDLFATPEVLRQVQADPR--QEAEAALVSLGYKPQEAA 173 Query: 179 TAVVSVLKKEKNIADDS--QIIRLALR 203 A+ V ++ DS Q+I+ AL+ Sbjct: 174 KAIAKV-----PVSSDSSEQVIKSALK 195 >gi|325528762|gb|EGD05824.1| Holliday junction DNA helicase RuvA [Burkholderia sp. TJI49] Length = 193 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL + + +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQVVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + E S A + ++ALV LGY + + A Sbjct: 121 AERLLL-------ELKGKLGADLGALAGE----ASPSDHAADILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|313673192|ref|YP_004051303.1| holliday junction DNA helicase ruva [Calditerrivibrio nitroreducens DSM 19672] gi|312939948|gb|ADR19140.1| Holliday junction DNA helicase RuvA [Calditerrivibrio nitroreducens DSM 19672] Length = 192 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 19/184 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT-LFVETH--MRQDQ 57 MI K++G + +Y+++DV G+ + I +L+C + D + L + T+ +R+D Sbjct: 1 MIAKLRGKLHEKKPNYIILDVNGIFFEISI---SLNCFTSLPDLNSELIISTYTIVREDG 57 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I ++GFL+D +++ F+LL SV VG ++A+ +LS +L +I ++ +IA PG+ Sbjct: 58 ISIYGFLNDDEKRLFLLLNSVSKVGPKLALSILSTCEIVKLKSAIKNRDINLIATAPGVG 117 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A RI+ EL+ K V+ D ++ + ISALVNLGY + A Sbjct: 118 KKTAERIILELRDKIEEFEVVMDADTGGLDDD-------------IISALVNLGYKKVDA 164 Query: 178 TTAV 181 +A+ Sbjct: 165 LSAL 168 >gi|183599000|ref|ZP_02960493.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827] gi|188021215|gb|EDU59255.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827] Length = 205 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + + + S A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQHSDIKLPDVNVKVSSRADIEAEAATALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K + +D +IR ALRA Sbjct: 181 RMVSKVAKPD---SDCESLIRDALRA 203 >gi|154482944|ref|ZP_02025392.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC 27560] gi|149736228|gb|EDM52114.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC 27560] Length = 197 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G +E + +D V++D G+ Y I+ TL +G IG+ ++ +R+D ++L Sbjct: 1 MISYISGVVEEIEKDKVVVDNNGIGYGIFASQSTLEQIG-IGEQVKIYTYFSVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS + Q F LL V GVG + + +LS L +++ ++K I++ PGI K Sbjct: 60 YGFLSRQELQLFKLLIGVSGVGPKGGLAILSTCPGDSLSMAVLADDAKAISKAPGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK K + +DM + +A+ AL LGY Q A A Sbjct: 120 AQKIIIELKDK------IDIEDMIAGETISKPMTKASGVVGDAVEALTALGYSQTMAYQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ + + D +I++ AL+ I Sbjct: 174 IKSI--ENVDGMDVEEILKKALKNI 196 >gi|331007236|ref|ZP_08330443.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC1989] gi|330418952|gb|EGG93411.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC1989] Length = 207 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + Y+LIDV GV Y + P+ + L G+ L + ++ +L Sbjct: 1 MIGRLSGVLIEKQAPYLLIDVAGVGYEVQAPMTSFYPLPVTGEKVILHTHLSVSENAHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F + +R+ F L V GVG ++A+ +LS + E V+ + N + ++PG+ K Sbjct: 61 FAFYTLEERRLFRTLIKVSGVGPKMALAILSGMPVNEFVQCVKGDNVAALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-----SALVNLGYGQD 175 A R++ E+K + L+ + VN E A P NA+ SAL+ LGY + Sbjct: 121 AERLIIEVKDRLGDLAEWESGGAANVNAESA----TPELLSNAVVADAESALIALGY-KP 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 ++S +K +++ +IRLAL++ Sbjct: 176 TVAAQMISAAQKIESVTSSEALIRLALKS 204 >gi|187927480|ref|YP_001897967.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J] gi|309779818|ref|ZP_07674573.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA] gi|229560120|sp|B2UFL2|RUVA_RALPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187724370|gb|ACD25535.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J] gi|308921395|gb|EFP67037.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA] Length = 193 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ V A + A++ ++AL+ LGY +A A Sbjct: 121 AERLLL-------ELKGKLGADLGTVPGGPA----VSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K+ S+ I+LAL+A+S Sbjct: 170 I----KQVPAGTGVSEGIKLALKALS 191 >gi|157962184|ref|YP_001502218.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC 700345] gi|189045771|sp|A8H546|RUVA_SHEPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157847184|gb|ABV87683.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC 700345] Length = 205 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 104/188 (55%), Gaps = 6/188 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VL+DV GV Y + P+ + L ++G ++ +R+D L Sbjct: 1 MIGRIRGILIEKQAPEVLVDVSGVGYELQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL GVG ++ + +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFVSKQERSLFRLLIKANGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E++ K SL +SV ++ M N + + + + + +AI+AL++LGY Q Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYKASEVVN--TAEEDAIAALLSLGYKPAQ 178 Query: 177 ATTAVVSV 184 A+ AV SV Sbjct: 179 ASKAVSSV 186 >gi|325264009|ref|ZP_08130742.1| holliday junction DNA helicase RuvA [Clostridium sp. D5] gi|324031047|gb|EGB92329.1| holliday junction DNA helicase RuvA [Clostridium sp. D5] Length = 207 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 106/203 (52%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + + V++DV GV Y IY P + + L + G + ++R+D ++L Sbjct: 8 MISYIRGELAAVETEKVIVDVGGVGYGIYMPGQAMGLLPQPGHEVKIHTYLNVREDAMQL 67 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS+++ +L +++ + K I+ PGI K Sbjct: 68 FGFLTRDDLEVFKLVIGVSGIGPKGGLNILSQLSPDDLRFAVMAGDVKAISAAPGIGKKT 127 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K +S+ V+ + A + A+ ALV LGYG ++ A Sbjct: 128 AEKLIIELKDK-LSIEDVLTH--AAEGSAAAVPVNNGGIQSEAVQALVALGYGSTESLRA 184 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V + D +++ AL+ Sbjct: 185 VKQVELDNPTVED---VLKEALK 204 >gi|194366898|ref|YP_002029508.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia R551-3] gi|229560131|sp|B4ST34|RUVA_STRM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194349702|gb|ACF52825.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia R551-3] Length = 197 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 78/137 (56%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L ++G TL+ ++D + L Sbjct: 1 MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E + + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ EL+ +A + Sbjct: 121 AERMVLELRDRAAQFGA 137 >gi|209695355|ref|YP_002263284.1| Holliday junction DNA helicase RuvA [Aliivibrio salmonicida LFI1238] gi|226698724|sp|B6EGJ3|RUVA_ALISL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|208009307|emb|CAQ79573.1| holliday junction ATP-dependent DNA helicase RuvA [Aliivibrio salmonicida LFI1238] Length = 206 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GN+ +LI+V G+ Y + P+ L IG +++ +R+D L Sbjct: 1 MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPPIGTEAIIYIHYVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTKKERALFREVIKANGVGPKLGLAILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K + + D + ++ I S S A+SAL++LGY QA Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPADTTSMDDASDLISSPQSAQDEAVSALISLGYKPVQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V V K + +IR +L+++ Sbjct: 181 SKMVSQVAKPDMT---SESLIRESLKSM 205 >gi|193213411|ref|YP_001999364.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB 8327] gi|229560016|sp|B3QQG1|RUVA_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193086888|gb|ACF12164.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB 8327] Length = 204 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + +++V G+ Y ++ T S L G L+ H+R+D +L Sbjct: 1 MFAFLRGELVTASREEAVVEVSGIGYRLHISSGTSSRLPVPGSPVFLYTHYHVREDLQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + + Q F LL S+ GVG ++A+ VLS ++ E+ E+I+ + + I G+ K Sbjct: 61 FGFLDEEELQLFRLLLSISGVGPKLAIAVLSGLSVGEIQEAIVSNRPETLFGISGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + +Q S + + S +A++AL LG+ + A A Sbjct: 121 AARIILELRDKILK----IQPTSSAKAGAPSAVLSATQLIDDAVAALTTLGFPKASAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL+ ++ + +++R +L A+ Sbjct: 177 VSKVLETTPGLSVE-ELVRTSLAAM 200 >gi|313677422|ref|YP_004055418.1| holliday junction DNA helicase ruva [Marivirga tractuosa DSM 4126] gi|312944120|gb|ADR23310.1| Holliday junction DNA helicase RuvA [Marivirga tractuosa DSM 4126] Length = 197 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG+I L +++I+V GV Y + P+ T K + H+++D L Sbjct: 1 MISYLKGSIIELEPTHLIIEVGGVGYHVIIPMSTYDAF-KSQKEVKVLTHFHVKEDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F+ L + G+G A+G+LS + E+ SI+ +N K I I GI K Sbjct: 60 YGFYLPEERTVFLDLIGISGIGPSTAIGMLSAMNPNEIKSSIVAENVKQIQSIKGIGGKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + +++ Q+ S S A+SAL+NLG+ ++ A Sbjct: 120 AQRVILELKDR-------YKKEGLITESTQSSGVSNNSLRNEALSALINLGFAKNSAEKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +L+ K Q+I+ AL++ Sbjct: 173 IDKILQANKENITLEQLIKQALKS 196 >gi|167750454|ref|ZP_02422581.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702] gi|167656605|gb|EDS00735.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702] Length = 199 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +ID GV Y TLS L KIG+ L +R+D + L Sbjct: 1 MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F +L SV GVG + A+ +LS +T + + K + PGI K Sbjct: 60 FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFA-INAISALVNLGYGQDQAT 178 A RI+ ELK K V +QD++ K A I + PS A+SAL+ LGY +AT Sbjct: 120 AERIVLELKDK------VSKQDVAAGVKGSAVPIVAAPSNTYAEAVSALMVLGYSNGEAT 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A+ + A ++IR L+ ++ Sbjct: 174 SALSGLDPS----APSDELIRAGLKKLA 197 >gi|221632653|ref|YP_002521874.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM 5159] gi|254767395|sp|B9KYT2|RUVA_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221156321|gb|ACM05448.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM 5159] Length = 191 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 15/180 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + VL+DVQGV + + TL LG+ GD +L +R+D++ L Sbjct: 1 MIRGVRGTLVAKRSGEVLVDVQGVTFRVQTSATTLQELGEPGDLVSLVTHLIVREDELAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+ L +V GVG R A+ +LS L E I + + +A+ PGI K Sbjct: 61 YGFATEAELELFLSLLAVSGVGPRGALNLLSLAAPDRLTEWIRGERIEELARAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL+G+ +L+ V Q +++E ++AL LGY +A A Sbjct: 121 ASRIVLELRGRLPALTEV--QAGEPIDQE-------------LVAALQALGYTAQEARQA 165 >gi|109899252|ref|YP_662507.1| Holliday junction DNA helicase RuvA [Pseudoalteromonas atlantica T6c] gi|109701533|gb|ABG41453.1| Holliday junction DNA helicase subunit RuvA [Pseudoalteromonas atlantica T6c] Length = 209 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VLIDV GV Y I P+ + L ++G +++ +R+D L Sbjct: 3 MIGRIRGTVVEKQPPEVLIDVAGVGYEIQIPMTSFYQLPEVGAEASVYTHFVVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L GVG ++A+ +LS ++ ++ + ++ + ++PG+ K Sbjct: 63 FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQHFMQCVAHEDITALVKLPGVGKKT 122 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E++ K +SL D + N + + A+SAL+ LGY Q Sbjct: 123 AERLVIEMRDRFKKLSLEQSASDDFALQGNNSIENTFVTSSDAKEEALSALIALGYKAPQ 182 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + SV K+ ++IR ALRA+ Sbjct: 183 ASKVINSVYVKD---ITSEELIREALRAM 208 >gi|332290325|ref|YP_004421177.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179] gi|330433221|gb|AEC18280.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + +L++V G+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGHLRGILLEKSPPEILLEVNGIGYEVLLPMTSFYHLPEVNMEAAIYTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ +E +I + + +IPG+ K Sbjct: 61 FGFYHKQDRTLFRELIKTNGVGPKLALAILSAMSVSEFSYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++ ELKGK + ++Q S ++ E+ S +AISALV LGY Sbjct: 121 AERLIVELKGKFKAYQHDDFFIEQTTTQSGIDTEKV------SATDDAISALVALGYKPA 174 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V V K E D Q+IR AL++ Sbjct: 175 EAEKMVKRVAKPE---WDSEQLIREALKS 200 >gi|238926806|ref|ZP_04658566.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] gi|238885338|gb|EEQ48976.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG + DY L+DV V Y ++ +T + + + L++ T++R+D I L Sbjct: 1 MIGFLKGKATHITSDYCLLDVHDVGYRVFISDQTRAHISPNAE-VMLYIHTNVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F+LL + G+G +VA G+LS T + + ++ K I ++PGI K Sbjct: 60 YGFFSREEYDLFLLLIGISGIGPKVAQGILSSATVNDFYCMVQQKDVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K LS V +D+ N A I + A AL+ LG+ QD + Sbjct: 120 AERILLELKDK---LSDVSVEDLPEGDNNVGAEIEN--GMVAEATEALLTLGF-QD---S 170 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 + V +++ + + ++IR AL Sbjct: 171 EIQRVFRQKHSCQNTEELIRYAL 193 >gi|319941758|ref|ZP_08016080.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis 3_1_45B] gi|319804691|gb|EFW01558.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis 3_1_45B] Length = 193 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 20/209 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +LIDV GV Y + P+ T L ++G TL +R+D L Sbjct: 1 MIGRLHGKLLEKNPPQILIDVSGVGYEVDVPMSTFCNLPEVGGELTLHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG ++A+ +LS IT +L +++ + ++ ++PGI K Sbjct: 61 YGFATLAERAVFRALIKISGVGPKIALALLSGITVDQLKDAVDRGETGLLTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + +A + +AL+ LGY + +A A Sbjct: 121 AERLVLELKGKLAGTGAATAAAAVPTSGARADVA----------AALIALGYSEREAAAA 170 Query: 181 VVSVLKKEKNIADDSQI---IRLALRAIS 206 K + +D + +RLAL++++ Sbjct: 171 T-------KKLPEDCTVNDGLRLALKSLT 192 >gi|188590168|ref|YP_001920351.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str. Alaska E43] gi|251779255|ref|ZP_04822175.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|229560021|sp|B2V337|RUVA_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188500449|gb|ACD53585.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str. Alaska E43] gi|243083570|gb|EES49460.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 198 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 7/185 (3%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG G+ +DY++I+ G+ Y I+ T+S + G+ +++E +R+D I L+GF Sbjct: 5 IKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKIYIEQIVREDFIGLYGFE 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S + F LL S+ GVGA+ A+ +LS L +II + K + + GI KIA RI Sbjct: 65 SLEELDMFKLLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGTGIGKKIAGRI 124 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVS 183 + ELK K S + ++C++ E + S A++ A+SAL++LGY + +A + Sbjct: 125 ILELKDKLKS-----DELLNCID-EFDDVTQDNSLALSEALSALISLGYTEKEAEKVLKD 178 Query: 184 VLKKE 188 V K E Sbjct: 179 VDKSE 183 >gi|117618993|ref|YP_858104.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166229627|sp|A0KPA3|RUVA_AERHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117560400|gb|ABK37348.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 204 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V GV Y + P+ L +IG T+ +R+D L Sbjct: 1 MIGRLRGVVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS +TAT+ V S+ + + ++PG+ K Sbjct: 61 YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM------SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E+K + L V D+ + +E A P + A SALV LGY Sbjct: 121 AERLVVEMKDR---LKGWVSHDLFSPAEITLPARESA--LRAPDSSEEAASALVALGYKP 175 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ V V ++ D IIR ALR++ Sbjct: 176 QQASQIVSKVAADGMSVED---IIREALRSL 203 >gi|241668355|ref|ZP_04755933.1| Holliday junction DNA helicase RuvA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876888|ref|ZP_05249598.1| holliday junction DNA helicase ruvA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842909|gb|EET21323.1| holliday junction DNA helicase ruvA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 217 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 12/213 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG+I +L+ +R+D +L Sbjct: 1 MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQISLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +D++ F L V G+GAR A+ +LS + +T L+ I ++ ++A +PGI K Sbjct: 61 YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV----QQDMSCVNKEQAHICSMPSFAINAI-----SALVNLG 171 A R++ E+ K + +++ + + VN P+ N+I AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYSQSSSTSASVNANSVQHTQTPAAISNSIFSESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 Y Q A + + + A + IR AL+ Sbjct: 181 YKQKDAEKMIRGTIGESTTAA---EAIRKALQG 210 >gi|152996211|ref|YP_001341046.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1] gi|189045756|sp|A6VXD2|RUVA_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150837135|gb|ABR71111.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1] Length = 200 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +++DV G+ Y + + T+ L +IG TLF +++D L Sbjct: 1 MIGRIVGTLIEKTPPELMVDVNGIGYEVSASMTTIYDLPQIGGQVTLFTHLLVKEDSHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F +L V G+G ++A+ +LS +++ EL+ ++ + + +IPG+ K Sbjct: 61 YGFIDKNERALFRVLIKVNGIGPKMALAILSSMSSEELITNVQESDVTALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L + D+ + + P A +AL++LGY +A A Sbjct: 121 AERLIIELRDK---LGQAAKTDLFSAPAVLRQVQADPRQ--EAEAALISLGYKPQEAAKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + A+ +I+ AL+ + Sbjct: 176 IAGV---PVDAANSEDVIKAALKGM 197 >gi|302561707|ref|ZP_07314049.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus Tu4000] gi|302479325|gb|EFL42418.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus Tu4000] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 17/203 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RVGQPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F+LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFVLLQTASGVGPRLAQAMLAVHSPDALRGAVATGDEKALTAVPGIGRKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ ELK G+ + + V ++ ++Q H +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGEPVG-APAVGAPVTSGWRDQLH------------AALIGLGYATREA 166 Query: 178 TTAVVSVLKKEKNIADDSQIIRL 200 AV +V + + Q+ +L Sbjct: 167 DEAVAAVTPQAEAAEGTPQVGQL 189 >gi|114563352|ref|YP_750865.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB 400] gi|122299598|sp|Q081N8|RUVA_SHEFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114334645|gb|ABI72027.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB 400] Length = 205 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 2/189 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + V++DV GV Y + P+ + L + LF +R+D L Sbjct: 1 MIGRLSGILVEKQAPEVVLDVNGVGYELQVPMTSFYELPALNQAAMLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVSCVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLVIEMRDKLKSLLEASAGSEREFMLQSNYTPAAAVDSAEEDAISALLSLGYKPAQAS 180 Query: 179 TAVVSVLKK 187 +V + K+ Sbjct: 181 KSVSAAFKE 189 >gi|320109383|ref|YP_004184973.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4] gi|319927904|gb|ADV84979.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4] Length = 198 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y + + T S L G LF+ T +R+D I L Sbjct: 1 MIAHLRGRLLAKSPNQAIVECGGVGYDVAISVTTFSALKSEGAEVELFINTQVREDAIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L +V G+G ++ + VLS I A LV +I + + +IPGI K Sbjct: 61 FGFAEMEEKRLFEKLITVSGIGPKLGITVLSGIAAPLLVAAIKGSDHATLQKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +DM + P+ + +SAL NLGY + A A Sbjct: 121 AERVVVELKDKL--------EDMISAPSADPGFHAGPA-GDDVLSALANLGYQKAAAQRA 171 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + +++E + + ++ R A+ A+ Sbjct: 172 IQTAIEQEPALRTEFEKLFRAAMGAM 197 >gi|291458999|ref|ZP_06598389.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon 078 str. F0262] gi|291418253|gb|EFE91972.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon 078 str. F0262] Length = 203 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L E VL++ G+ Y I P L L G+ + +R+D + L Sbjct: 1 MIRYVRGILRELREGMVLVEAGGLGYGIRVPASLLPALPPPGEEVKIHTYFSVREDAMEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ DR F+ L V G+G + A+G+LS + EL +I + + I PGI K Sbjct: 61 FGFLTAEDRDIFVRLLGVSGIGPKGALGILSVLRPEELRRAIFSGDIRSIQAAPGIGKKT 120 Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ +LK K L + ++ +E ++ A A+ AL++LGYG +A Sbjct: 121 AERLILDLKDKIDPPDFLPAFSDGEIPEGGEE-----ALRDSAKEALEALLSLGYGMAEA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V E DD +++ +LR ++ Sbjct: 176 QRAVRRVKLTEDMTPDD--VLKQSLRHLA 202 >gi|150009258|ref|YP_001304001.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis ATCC 8503] gi|256841816|ref|ZP_05547322.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13] gi|298376955|ref|ZP_06986909.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19] gi|301311050|ref|ZP_07216979.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3] gi|166230579|sp|A6LFB5|RUVA_PARD8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149937682|gb|ABR44379.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis ATCC 8503] gi|256736710|gb|EEU50038.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13] gi|298265939|gb|EFI07598.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19] gi|300831113|gb|EFK61754.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3] Length = 196 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T S G +++ +R+D L Sbjct: 1 MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R+ F+LL SV GVG A +LS + +ELV+ I +N + + GI +K Sbjct: 60 FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S+ N +A + S + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPMESMAG------NLPEASV-SNGAVTEEAVAALVMLGFQKAASQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++LK +A + Q+I+ ALR Sbjct: 173 VSAILKGSPTLAVE-QVIKTALR 194 >gi|15895553|ref|NP_348902.1| Holliday junction DNA helicase RuvA [Clostridium acetobutylicum ATCC 824] gi|20455254|sp|Q97GT0|RUVA_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15025290|gb|AAK80242.1|AE007729_9 Holliday junction specific DNA helicase, subunit ruvA [Clostridium acetobutylicum ATCC 824] gi|325509702|gb|ADZ21338.1| Holliday junction DNA helicase motor protein [Clostridium acetobutylicum EA 2018] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 10/192 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DY+++D GV Y I+ T++ + K + +++ +RQD I L Sbjct: 1 MYEYIKGKYIGINKDYIIVDNNGVGYKIFTSGNTMANMPKPEEDVLIYLTQIVRQDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F L ++ GVGA+ ++ +LS T L +II + K I + PGI K Sbjct: 61 YGFLTKDELEMFNKLLTINGVGAKASLSLLSICTVNNLKYAIITGDEKTIVKAPGIGKKT 120 Query: 121 ASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A RI+ ELK K IS + ++ E + FA+N+ LGY + + Sbjct: 121 AQRIILELKDKFKSTDISKGNSEINNLDVDYDEHSKKLEEVRFALNS------LGYSEKE 174 Query: 177 ATTAVVSVLKKE 188 A+ +V K E Sbjct: 175 TDRAINNVDKSE 186 >gi|330815560|ref|YP_004359265.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia gladioli BSR3] gi|327367953|gb|AEA59309.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia gladioli BSR3] Length = 193 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPHTGERVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL + + LQ+S + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKISGIGARMALAVLSGMSVQELSQVVTLQDSARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ E A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLG----ELAGQASQSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQI---IRLALRAIS 206 + KN+ + + I+L+L+A+S Sbjct: 170 I-------KNVPAGTGVSDGIKLSLKALS 191 >gi|255015865|ref|ZP_05287991.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_7] Length = 196 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T S G +++ +R+D L Sbjct: 1 MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGS-KTTGKIYIYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R+ F+LL SV GVG A +LS + +ELV+ I +N + + GI +K Sbjct: 60 FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S+ N +A + S + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPMESMAG------NLPEASV-SNGAVTEEAVAALVMLGFQKAASQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++LK +A + Q+I+ ALR Sbjct: 173 VSAILKGSPTLAVE-QVIKTALR 194 >gi|227538550|ref|ZP_03968599.1| crossover junction endodeoxyribonuclease [Sphingobacterium spiritivorum ATCC 33300] gi|227241469|gb|EEI91484.1| crossover junction endodeoxyribonuclease [Sphingobacterium spiritivorum ATCC 33300] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 104/188 (55%), Gaps = 11/188 (5%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +V++DV G+ Y I+ + T + + K + C LF+ +R+D LFGF ++ +RQ F L Sbjct: 16 HVVLDVNGIGYYIHISLNTFALI-KDQENCKLFISFQVREDSQTLFGFATEGERQLFEHL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV G+G +LS IT E+ +II VI +I GI K A R++ EL+ K Sbjct: 75 ISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKTAQRLILELQDK---- 130 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + +Q + A S+P A+SAL+ LG+ ++QA + +++ E +++ + Sbjct: 131 --LKKQGPDALISPVATKQSVPE---EALSALIMLGFVKNQAEKVLNTIINTEPDLSVE- 184 Query: 196 QIIRLALR 203 Q+I+LAL+ Sbjct: 185 QLIKLALK 192 >gi|323495172|ref|ZP_08100257.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546] gi|323310612|gb|EGA63791.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546] Length = 205 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 31/220 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGK---------------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 A R++ E+K + A + S VQ S +E A+S Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPYTDAAPVDSAVQASQSSAEEE-------------AVS 167 Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 AL+ LGY QA+ V V+K E Q+IR AL+++ Sbjct: 168 ALLALGYKPTQASKVVSQVMKPEMT---SEQLIREALKSM 204 >gi|127513004|ref|YP_001094201.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4] gi|166200262|sp|A3QEP4|RUVA_SHELP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126638299|gb|ABO23942.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4] Length = 205 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 15/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGLLVEKQAPEVLIETGGVGYEVQMPLTSFYELPELNQEAVIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA E V+ + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVKCVEHDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS--MPSFAIN-----AISALVNLGYG 173 A R++ E++ K SL + S N+ + + S P+ +N AISAL+ LGY Sbjct: 121 AERLLVEMRDKLKSL-----MEASHGNEREFVLQSNYTPAPVVNTAEEDAISALLALGYK 175 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ AV SV ++ D +I+ +L+++ Sbjct: 176 PAQASKAVSSVFEEG---MDSETLIKASLKSM 204 >gi|189468525|ref|ZP_03017310.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM 17393] gi|189436789|gb|EDV05774.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM 17393] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID G+ Y + + T + + GK C L++ +R+D Sbjct: 1 MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLK 118 Query: 120 IASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++ +LK K S S + ++ A + AI+AL LG+ Q Sbjct: 119 TAQRVIVDLKDKIKTGTASAGSTIGSLGGMLSAANAQVQE------EAIAALTMLGFAQA 172 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 + V+++LK E + A Q+I+LAL+ Sbjct: 173 PSQKVVLAILKDEPD-APVEQVIKLALK 199 >gi|323706513|ref|ZP_08118072.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534143|gb|EGB23935.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium xylanolyticum LX-11] Length = 186 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 16/184 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I DYV+I+ G+ + I P TLS L + L+ H+++D +L Sbjct: 1 MIDYIKGHIVEKGIDYVVIETLGIGFKIIVPRSTLSHLTNTSEIIKLYTYMHVKEDGFQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F L +V GVG + A+ +LS I+ ++I +SK I + PGI K Sbjct: 61 YGFLTTNEVEIFKKLIAVNGVGPKAAVSILSTISIEGFYDAIRNSDSKAIEKSPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K AH + + + + AL++LGY + ++ A Sbjct: 121 AQRIILELKDKLTF----------------AHDVKLDDLSNDVVDALLSLGYTKQESIKA 164 Query: 181 VVSV 184 + V Sbjct: 165 LEGV 168 >gi|320528952|ref|ZP_08030044.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399] gi|320138582|gb|EFW30472.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399] Length = 198 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + D+ L+DV V Y ++ +T + + + G+ L++ TH+R+D I L Sbjct: 1 MIGFLRGTVVHSAVDHCLLDVHNVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L + G+G + A +LS +T + I ++ K I ++PGI K Sbjct: 60 YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKDVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D S V + + S A AL++LG+ Q++ T Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAVVSDVS-----DSMLAEATEALMSLGFQQNEIQT- 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V + + + +++R AL Sbjct: 174 ---VFQGKTDYQSTEELVRYAL 192 >gi|253566072|ref|ZP_04843526.1| Holliday junction DNA helicase motor protein [Bacteroides sp. 3_2_5] gi|251945176|gb|EES85614.1| Holliday junction DNA helicase motor protein [Bacteroides sp. 3_2_5] Length = 201 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L +ID G+ Y + + T S + GK C L++ +R+D Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAIQGK--SSCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQD-------MSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ +LK K + + + +N E AI+AL LG+ Sbjct: 119 TAQRVIVDLKDKIKTGAMAATAVGGAAGALLPAMNAEVQE---------EAIAALTMLGF 169 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + AV+++LK+E + A ++I+LAL+ Sbjct: 170 AATPSQKAVLAILKEEPD-APVEKVIKLALK 199 >gi|21220019|ref|NP_625798.1| Holliday junction DNA helicase RuvA [Streptomyces coelicolor A3(2)] gi|20455268|sp|Q9L290|RUVA_STRCO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|6822215|emb|CAB70921.1| holliday junction DNA helicase [Streptomyces coelicolor A3(2)] Length = 201 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 17/200 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +I+V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ ELK G+ I + V +S ++Q H +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGEPIG-APAVGAPVSTGWRDQLH------------AALIGLGYATREA 166 Query: 178 TTAVVSVLKKEKNIADDSQI 197 AV +V + + Q+ Sbjct: 167 DEAVSAVAPQAEAAGGTPQV 186 >gi|262368599|ref|ZP_06061928.1| Holliday junction helicase subunit A [Acinetobacter johnsonii SH046] gi|262316277|gb|EEY97315.1| Holliday junction helicase subunit A [Acinetobacter johnsonii SH046] Length = 200 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL ++ F L V GVG ++A+G+LS ++ L+ ++ ++ + ++PG+ K Sbjct: 60 YGFLHQQEKIIFRTLLKVNGVGPKMALGILSTLSVDMLIHTVEHEDINTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + ++SS S V EQ + A A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKAMSSGAAPSNSTV--EQIQFTGNSAVA-EAEAALQSLGYKPLEAQKL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + + + S IIR AL++++ Sbjct: 177 VSAA---KGDFTEASDIIRAALKSMN 199 >gi|323143601|ref|ZP_08078278.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT 12066] gi|322416664|gb|EFY07321.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT 12066] Length = 207 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M G ++G + + VLI+V GV Y + P+ +L+ + + + ++V +R+D L Sbjct: 1 MFGSLRGKVLRIDGVTVLIEVGGVGYEVEMPVTSLAKI-SVNEEEFIYVHHVVREDDELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF DR F L V GVG ++A+ VLS A + + ++ + + Q+PG+ K Sbjct: 60 YGFCDLSDRTLFRELIKVNGVGPKLALAVLSSFNAHDFIAAVTSGRTGALTQVPGVGKKT 119 Query: 121 ASRIMTELKGK--AISLSSVVQQ-DMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQ 176 A R+M ELK + + LS V D+S VN A + ++ A++ A+SAL+ LGY + Sbjct: 120 AERLMVELKDRLDKLPLSDTVSTADLSKVNGMAAVVGNI---AVDEAVSALIGLGYKEAL 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A V SV K+ D QII AL IS Sbjct: 177 AFEYVNSVAKEG---MDTKQIIVAALGLIS 203 >gi|295109923|emb|CBL23876.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus obeum A2-162] Length = 203 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 4/186 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + E+ V+++ G+ Y I+ ++ + + H+R+D ++L Sbjct: 1 MISFIRGLVADTTENSVILEAGGIGYEIFMTGSSIEQASRSDGKVKIHTYFHVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + A+GVL+ +TA EL +++ + K I++ PGI K Sbjct: 61 YGFLSRDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS--MPSFAINAISALVNLGYGQDQAT 178 A +++ ELK K + L ++ ++ +E A I + A+ ALV LGY +A Sbjct: 121 AQKLILELKDK-LKLEDAFEKKLAH-EQEAADISGSVLHDGRQEAVEALVALGYSSTEAM 178 Query: 179 TAVVSV 184 AV V Sbjct: 179 KAVRKV 184 >gi|329893679|ref|ZP_08269813.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC3088] gi|328923606|gb|EGG30918.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC3088] Length = 205 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + ++++ GV Y I P+ TL L +GD + +R+D L Sbjct: 1 MIGSIRGRLIVKQPPDIVVEAAGVGYEIQVPMTTLFQLPALGDDVLILTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D DRQ F L V GVG ++A+ +LS + A + + + +PG+ K Sbjct: 61 YGFVDDTDRQLFRQLIKVNGVGPKLALAILSGMDAVAFARCVGRNDVSALVALPGVGKKT 120 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ + LS + Q + A I P +A SALV LGY +A+ Sbjct: 121 AERLIVEMRDRLGDWLSQLSPQGENAGGIVGATIAHDP--IADAESALVALGYKPQEASR 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V SV + D +IRLALR+ Sbjct: 179 LVQSVAGDQD--LDSETLIRLALRS 201 >gi|206901849|ref|YP_002251320.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum H-6-12] gi|206740952|gb|ACI20010.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum H-6-12] Length = 193 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 20/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59 + I G + + ED+V++D + IY L K+GD L+V + +D ++ Sbjct: 3 FLNHIYGKLLRIAEDFVVVDTGAFGFKIYIGKNLALKLNEKLGDNVLLYVAEVIEKDNVK 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFLS+ +R F L+++ GVG ++A+ ++S + E E + ++ + IPGI K Sbjct: 63 LFGFLSEEERDLFESLKNITGVGVKIALRIVSTLPPKEFYEVLEKEDLNTLLNIPGIGKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 IA +I E+KG + V D V K +AL+NLGY + Sbjct: 123 IAQKIFLEIKG---VIPKRVYNDEENVIK----------------NALLNLGYDKKDIEL 163 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + K+ K++ + +II+ AL+ +S Sbjct: 164 VMRDIRKEFKSLDNLEEIIKFALKRLS 190 >gi|212550754|ref|YP_002309071.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229470529|sp|B6YR38|RUVA_AZOPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212548992|dbj|BAG83660.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 196 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 19/208 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG I L D V+I+ + Y+++ + T L KI C L++ +R++ +L Sbjct: 1 MLDFIKGEIVELIPDSVIIETGNIGYMLFISLNTYFSLTKIKS-CKLYIYEVIREETHQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +RQ F L SV GVGA +A VLS ++ EL E I N + + GI K Sbjct: 60 FGFIDKKERQLFTHLISVPGVGANIARMVLSSLSVCELEEIIFSGNVSALQALKGIGNKT 119 Query: 121 ASRIMTELKGKA-----ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ +LK K S +++ S + KE AI+AL+ LG+ Q Sbjct: 120 AERIIIDLKDKVKPDNIPSSDTIITNISSNITKE-------------AITALITLGFSQS 166 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 + V ++ + QII+ AL+ Sbjct: 167 ASQKVVNKIVSNNSSSTTIEQIIKKALK 194 >gi|237720151|ref|ZP_04550632.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4] gi|229450703|gb|EEO56494.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4] Length = 200 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KSCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS---FAINAISALVNLGYGQDQ 176 A R++ +LK K ++ + S A + P+ A+SAL LG+ Sbjct: 119 TAQRVIVDLKDKIKTMGT------SAAGGASAGLLLQPANVEVQEEAVSALTMLGFAAAP 172 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 + V+++LK+E + A ++I+LAL+ Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198 >gi|145297804|ref|YP_001140645.1| Holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp. salmonicida A449] gi|166229628|sp|A4SJ25|RUVA_AERS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|142850576|gb|ABO88897.1| holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp. salmonicida A449] Length = 204 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG T+ +R+D L Sbjct: 1 MIGRLRGVVIEKQPPEVLLEVGGLGYEVQMPMSCFYDLPEIGKEVTIHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS +TAT+ V S+ + + ++PG+ K Sbjct: 61 YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK----EQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + L V D+ + + + P + A SALV LGY Q Sbjct: 121 AERLVVEMKDR---LKGWVSHDLFSPAEISLPARESVLRAPDSSEEAASALVALGYKPQQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K+ ++ D IIR +LR++ Sbjct: 178 ASQIVSKIAKEGMSVED---IIRESLRSL 203 >gi|71909671|ref|YP_287258.1| Holliday junction DNA helicase motor protein [Dechloromonas aromatica RCB] gi|90134857|sp|Q478E3|RUVA_DECAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71849292|gb|AAZ48788.1| Holliday junction DNA helicase subunit RuvA [Dechloromonas aromatica RCB] Length = 192 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 32/214 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DV GV Y + P+ T L G+ L +R+D L Sbjct: 1 MIGRLTGILAEKNPPQIVLDVNGVGYELDVPMSTFYNLPAAGEKTKLLTHFAVREDGHYL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F L V G+GAR A+ VLS ++ +L ++ Q + +IPGI K Sbjct: 61 YGFLTEAERFAFRQLLKVSGIGARTALSVLSGLSVGDLAAAVAQQELGRLIKIPGIGKKT 120 Query: 121 ASRIMTELKGK-----AISLSSVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ ELKGK +SL V +QD+S +AL+ LGY Sbjct: 121 AERLLLELKGKLADATGVSLHPAVDDSKQDIS--------------------NALLALGY 160 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + +A +A +K+ S IR AL+ +S Sbjct: 161 NEKEAASA----MKQLPADVSTSDGIRAALKLLS 190 >gi|332305758|ref|YP_004433609.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173087|gb|AEE22341.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 207 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 109/210 (51%), Gaps = 9/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VLIDV GV Y I P+ + L ++G+ +++ +R+D L Sbjct: 1 MIGRIRGTLIEKQPPEVLIDVSGVGYEIQIPMTSFYQLPEVGEQASVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L GVG ++A+ +LS ++ ++ + ++ + ++PG+ K Sbjct: 61 FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQNFMQCVAHEDITALVKLPGVGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNK---EQAHICSMPSFAINAISALVNLGYGQD 175 A R++ E++ K +SL D + E + S + A+SAL+ LGY Sbjct: 121 AERLVIEMRDRFKKLSLEQSAGDDFTLQGSNGIENTFVTSTDA-KEEALSALIALGYKAQ 179 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ + SV K+I ++ +IR ALRA+ Sbjct: 180 QASKVINSVYV--KDITSEA-LIREALRAM 206 >gi|54025666|ref|YP_119908.1| Holliday junction DNA helicase RuvA [Nocardia farcinica IFM 10152] gi|81374258|sp|Q5YTE7|RUVA_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54017174|dbj|BAD58544.1| putative Holliday junction DNA helicase B subunit [Nocardia farcinica IFM 10152] Length = 201 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++ GV Y + TL+ L + G L+ +R+D + L Sbjct: 1 MIASVRGEVLEIALDHVVVEAAGVGYRLNATPSTLATLTR-GAEARLYTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM VL+ + L +++ N + ++PGI + Sbjct: 60 YGFADTEARDLFGLLQTVSGVGPRLAMAVLAVLEPEALRKALAESNVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQD 175 A R++ EL+ K ++ V + S P+ A + AL LG+ Sbjct: 120 AERMVVELRDK-----------VNLVPVQAGPPGSTPAVAATPVREQVVEALTGLGFPLK 168 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLAL 202 QA A+ +VL E+ AD S +R AL Sbjct: 169 QAEQALDTVL-AEQPAADTSTALRAAL 194 >gi|295084896|emb|CBK66419.1| Holliday junction DNA helicase subunit RuvA [Bacteroides xylanisolvens XB1A] Length = 200 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIHEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ +LK K ++S S Q + A+SAL LG+ + Sbjct: 119 TAQRVIVDLKDKIKTMSGSAGGGSSAGLLLQPANAEVQE---EAVSALTMLGFAAAPSQK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V+++LK+E + A ++I+LAL+ Sbjct: 176 VVLAILKEEPD-APVEKVIKLALK 198 >gi|237714009|ref|ZP_04544490.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1] gi|262407061|ref|ZP_06083610.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22] gi|294644868|ref|ZP_06722608.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a] gi|294809795|ref|ZP_06768479.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD CC 1b] gi|229445833|gb|EEO51624.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1] gi|262355764|gb|EEZ04855.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22] gi|292639806|gb|EFF58084.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a] gi|294443035|gb|EFG11818.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD CC 1b] Length = 200 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIHEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ +LK K ++S S Q + A+SAL LG+ + Sbjct: 119 TAQRVIVDLKDKIKTMSGSAGGGASAGLLLQPANAEVQE---EAVSALTMLGFAAAPSQK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V+++LK+E + A ++I+LAL+ Sbjct: 176 VVLAILKEEPD-APVEKVIKLALK 198 >gi|53714974|ref|YP_100966.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46] gi|60682940|ref|YP_213084.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis NCTC 9343] gi|265766821|ref|ZP_06094650.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16] gi|81314002|sp|Q5L9Q7|RUVA_BACFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81381448|sp|Q64PZ9|RUVA_BACFR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52217839|dbj|BAD50432.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46] gi|60494374|emb|CAH09170.1| putative holliday junction DNA helicase [Bacteroides fragilis NCTC 9343] gi|263253198|gb|EEZ24674.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16] gi|301164406|emb|CBW23964.1| putative holliday junction DNA helicase [Bacteroides fragilis 638R] Length = 201 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L +ID G+ Y + + T S + GK C L++ +R+D Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAIQGK--SSCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQD-------MSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ +LK K + + + +N E AI+AL LG+ Sbjct: 119 TAQRVIVDLKDKIKTGAMAATAVGGAAGALLPAMNAEVQE---------EAIAALTMLGF 169 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + AV+++LK+E + A ++I+LAL+ Sbjct: 170 AAAPSQKAVLAILKEEPD-APVEKVIKLALK 199 >gi|78065251|ref|YP_368020.1| Holliday junction DNA helicase motor protein [Burkholderia sp. 383] gi|90134649|sp|Q39JJ0|RUVA_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77965996|gb|ABB07376.1| DNA recombination protein, RuvA [Burkholderia sp. 383] Length = 193 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQNGERVVLLTQQIVREDANLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ E A S A + ++AL+ LGY + + A Sbjct: 121 AERLLL-------ELKGKLGADLG----ELAGAASPSDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|242280346|ref|YP_002992475.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM 2638] gi|259495638|sp|C6C065|RUVA_DESAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|242123240|gb|ACS80936.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM 2638] Length = 203 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 108/208 (51%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNI-EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + E + +++ GV Y ++ + +S L + G T +V + +R+D Sbjct: 1 MIAYIHGKLLEATDKSCIILTPGGVGYELFLTLSAISTLPESGSDVTFYVHSVIREDAFD 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF DR+ F L SV +G + A+ +LS+ +L + + ++ K ++ +PGI K Sbjct: 61 LYGFPCFDDREVFRTLISVDRLGPKKALAILSQFGPKDLQDLVFREDVKTLSIVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ LK K +L S + +C V +++ ++A+S L NLGYG D+ Sbjct: 121 SARQILWSLKDKMETLKSATVRSGACPVEGDRSEF-------LDALSGLRNLGYGDDEVR 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + +E ++ D IR+AL+ IS Sbjct: 174 DFLKDIFDEEPDL-DAGGAIRVALKKIS 200 >gi|163846991|ref|YP_001635035.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus J-10-fl] gi|222524813|ref|YP_002569284.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl] gi|189045746|sp|A9WA87|RUVA_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766952|sp|B9LCT8|RUVA_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163668280|gb|ABY34646.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus J-10-fl] gi|222448692|gb|ACM52958.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl] Length = 195 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I+ + D+++++ GV +IY P TL+ +G+IG L+ +R+D + L Sbjct: 1 MIASIRGIIQSIGIDHLIVETGGVGLLIYAPRSTLNAVGQIGSETFLYTLLIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++A+ +LS + E+ +SI + +A++PGI K Sbjct: 61 YGFSDPAQRNLFEQLIGVSGVGPKIALNLLSSGSPDEIQKSIAGGDIARLARVPGIGKKT 120 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A RI+ EL+GK LS ++S +++E I L++LGY Sbjct: 121 AERIVLELRGKIDLRQLSGTTPGNVSTLDRELTDI-------------LISLGY 161 >gi|254303051|ref|ZP_04970409.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323243|gb|EDK88493.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 194 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 82/145 (56%), Gaps = 1/145 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145 A I+ +LKGK +L+ ++ +S Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM 144 >gi|313203476|ref|YP_004042133.1| holliday junction DNA helicase subunit ruva [Paludibacter propionicigenes WB4] gi|312442792|gb|ADQ79148.1| Holliday junction DNA helicase subunit RuvA [Paludibacter propionicigenes WB4] Length = 196 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 105/212 (49%), Gaps = 27/212 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L YV+++ G+ Y I+ + T S LG+ L+V +R+D L Sbjct: 1 MIDYIKGEISELTPAYVVLETAGIGYFIHITLPTFSFLGEHTS-AKLYVYESIREDAHVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +RQ F+LL SV G+GA A ++S +A E+ + I N + I GI K Sbjct: 60 YGFRLQSERQLFLLLISVSGIGANTARMIMSSYSAQEIQDMIASGNVSALNAIKGIGTKT 119 Query: 121 ASRIMTELKGK---------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 A RI+ +LK K ISL VQ + KE+ A+SALV LG Sbjct: 120 AQRIIVDLKDKIMKSAGGSEIISLVPNVQNE----KKEE------------AVSALVMLG 163 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + A+ VV + +E+ Q+I+LAL+ Sbjct: 164 FAAS-ASQKVVDKIVQEQPALKVEQLIKLALK 194 >gi|258621408|ref|ZP_05716442.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573] gi|258626836|ref|ZP_05721643.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603] gi|262165955|ref|ZP_06033692.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223] gi|258580883|gb|EEW05825.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603] gi|258586796|gb|EEW11511.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573] gi|262025671|gb|EEY44339.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223] Length = 204 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A I S P+ A N AISAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|325917782|ref|ZP_08179966.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas vesicatoria ATCC 35937] gi|325535998|gb|EGD07810.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas vesicatoria ATCC 35937] Length = 194 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 77/137 (56%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITGGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ EL+ +A SS Sbjct: 121 AERMVVELRDRAADFSS 137 >gi|121603423|ref|YP_980752.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans CJ2] gi|120592392|gb|ABM35831.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans CJ2] Length = 192 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 37/216 (17%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + P+ T L +G+ +LF +R+D L Sbjct: 3 MIGRLTGQLAEKNPPEILVDCHGVGYEVLVPMSTFYNLPGLGEKISLFTHFIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVG R+A+ VLS ++ EL +++ LQ + I ++PGI K Sbjct: 63 YGFGSTAERGAFRQLIKITGVGPRMALSVLSGMSVAELAQAVTLQEAGRIVKVPGIGKKT 122 Query: 121 ASRIMTELK-------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ ELK G +S+SS Q D+ + ALV LGY Sbjct: 123 AERLLLELKGKLGADIGAHVSVSSEAQLDI--------------------LQALVALGYS 162 Query: 174 QDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206 A A+ K + D S+ I+LALRA+ Sbjct: 163 DKDAALAL-------KALPPDVGVSEGIKLALRALG 191 >gi|270157092|ref|ZP_06185749.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968] gi|289164497|ref|YP_003454635.1| holliday junction DNA helicase [Legionella longbeachae NSW150] gi|269989117|gb|EEZ95371.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968] gi|288857670|emb|CBJ11513.1| holliday junction DNA helicase [Legionella longbeachae NSW150] Length = 198 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 20/212 (9%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G+I Y+ L+ +V GV Y + + T L + L + T +R+D + Sbjct: 1 MIGWLDGHIVDKYQPGKLVLNVHGVGYDVETSLNTFFKLDTLNGSVGLHIHTIVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R+ F L V GVG ++AM +LS IT E +E I +N+ + ++PGI K Sbjct: 61 LYGFLDRQERELFRALIKVNGVGPKLAMSILSSITPNEFIECIQQENAVFLMKLPGIGKK 120 Query: 120 IASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++ E LK ++ S ++ D ++++ A+SAL LGY Sbjct: 121 TAERLVVEMRDSLKQFSVPCSESLKSDHRMSDQDE------------AVSALEVLGYKPQ 168 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 +A AV V + Q+IR AL+ ++ Sbjct: 169 EALKAVKKV---NDGVKSCEQLIRDALQVLAA 197 >gi|119716613|ref|YP_923578.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp. JS614] gi|166230576|sp|A1SJA6|RUVA_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119537274|gb|ABL81891.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp. JS614] Length = 200 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 18/211 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++V GV I C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVRGQVAAVTLSSAVLEVGGVGLDIMCTPGTLATL-RVGQQAALPTSMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q F LLQ+ GVG ++A +L+ ++ +L +I + K + ++PGI K Sbjct: 60 FGFADEDEKQTFELLQTASGVGPKLAQAMLAVLSTDDLRLAITGDDVKTLTRVPGIGQKG 119 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ EL+ + S+ V V ++Q H LV LG+ Sbjct: 120 AQRIILELRDRIGAPTGAGRSAGVPAPAGAVWRDQVH------------QGLVGLGWPVR 167 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A AV +V + ++ D + ++R ALR +S Sbjct: 168 DAEKAVAAVAPEAGDVPDVAALLRAALRTLS 198 >gi|254445801|ref|ZP_05059277.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium DG1235] gi|198260109|gb|EDY84417.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E +I+ G+ Y+++ P+ T + L G+ L R+D L Sbjct: 1 MIVSIEGILERATPLTAIINAGGLGYLVHIPVSTAAKLPANGETVKLHTHAVYREDSQSL 60 Query: 61 FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S+ +R +F LL + V GVG +VA+G++S++ L+ +I ++ ++A+ PGI K Sbjct: 61 YGFASEDERNFFQLLIEKVSGVGPKVAIGMMSKLELPSLISAIGNADAVLLAKTPGIGKK 120 Query: 120 IASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK K A + +S V A + S +AI AL+ LGY Q A Sbjct: 121 TAERVVIELKDKLGAFAHTSSANPLQGLVPGNTAAAGKV-SHEDDAILALLALGYKQSDA 179 Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202 +V ++ A +I+ AL Sbjct: 180 AKSVGKAVEALGPNASTEALIKAAL 204 >gi|299067939|emb|CBJ39153.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum CMR15] Length = 193 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 27/212 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKIALLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ ELKGK A+ VV D A++ ++AL+ LGY Sbjct: 121 AERLLLELKGKLGADLGAVPGGPVVSDD-----------------AVDVLNALLALGYSD 163 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A A+ K+ S+ I+LAL+A+S Sbjct: 164 KEAAQAI----KQVPAGTGVSEGIKLALKALS 191 >gi|189502747|ref|YP_001958464.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus 5a2] gi|229470527|sp|B3EU33|RUVA_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189498188|gb|ACE06735.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus 5a2] Length = 194 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G+I +++DV G+ Y + ++T L I C +F H+ QD L Sbjct: 1 MIAYIQGSITYKSPTQLIVDVGGIGYELQISLQTYDSLKDIAASCKIFTYLHITQDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++Q F+ L SV G+G RVA+ +LS +T L ++I+ ++ + + GI K Sbjct: 61 YGFSTIEEKQCFLQLLSVNGIGPRVAITILSALTPEALQQAIMTHDTITLQAVKGIGQKA 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+GK + +++ S + A++AL LG + A Sbjct: 121 AQRIILELQGKVGKVGNMLSLQPS----------GQEAIYQEALAALSKLGIHKSTAEKT 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V ++LK+ + +I+LAL+ Sbjct: 171 VAAILKEHQGEITVESLIKLALKG 194 >gi|297198358|ref|ZP_06915755.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC 29083] gi|197714415|gb|EDY58449.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC 29083] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 26/215 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTIAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RLGQPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFVDDDERQIFELLQTASGVGPRLAQAMLAVHAPDALRRAVATGDEKALIAVPGIGKKG 119 Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +++ ELK + A ++ + V Q ++Q H +AL+ LGY Sbjct: 120 AQKLLLELKDRLGEPIGAPAIGAPVTQGW----RDQLH------------AALIGLGYAT 163 Query: 175 ---DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 D+A TAV + + Q+++ AL+ ++ Sbjct: 164 READEAVTAVTPQAEASEGTPQVGQLLKAALQTLN 198 >gi|119504258|ref|ZP_01626338.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2080] gi|119459766|gb|EAW40861.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2080] Length = 209 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + +L+DV G+ Y + P+ TL L ++G+ TL +R+D L Sbjct: 1 MIGYLRGRLIVKRPPELLVDVGGIGYELQVPMTTLFDLPEVGEEVTLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + DR+ F L V GVG ++A+ +LS + A + + + + +PG+ K Sbjct: 61 YGFREEADRRLFRELIKVSGVGPKLALALLSGLDARAFAQCLQRDDVATLVALPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSF--AINAISALVNLGYGQDQA 177 A R++ E++ KA +++ + Q S+ P+ A ALV LGY +A Sbjct: 121 AERLLVEMRDKA---GKWLEELSPAIPGTQGQFVSVAPAMDSRTEAEQALVALGYKLPEA 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V +V +++I ++IR AL+A Sbjct: 178 SRLVAAV--DDESIESSEELIRRALKA 202 >gi|157375170|ref|YP_001473770.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3] gi|189045772|sp|A8FUW9|RUVA_SHESH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157317544|gb|ABV36642.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3] Length = 205 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 112/210 (53%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQG+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGLLVEKQAPEILLEVQGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E++ K L S+++ + P+ IN AI+AL++LGY Sbjct: 121 AERLLVEMRDK---LKSLMEASAGSEREFMLKSNYTPAPVINTAEEDAIAALLSLGYKPA 177 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ AV +V ++ D +I+ +L+++ Sbjct: 178 QASKAVSAVY---QDGMDSETLIKSSLKSM 204 >gi|37522453|ref|NP_925830.1| Holliday junction DNA helicase RuvA [Gloeobacter violaceus PCC 7421] gi|44888383|sp|Q7NCU2|RUVA_GLOVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|35213454|dbj|BAC90825.1| holliday junction DNA helicase [Gloeobacter violaceus PCC 7421] Length = 206 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%) Query: 14 EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 + + +DV GV Y ++ RT+ L +IG+ LF +R+D ++LFGFL +R+ F Sbjct: 18 QSWATVDVGGVGYRVWTHARTVGKLPRIGEEVKLFTLMIVREDAMQLFGFLEPGERELFG 77 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L SV G+G R+ + +L + TELV++I+ N++ +A PG+ K A R+ EL+ + Sbjct: 78 QLVSVSGIGPRMGLALLETLAPTELVQAILQGNTRALALAPGVGAKTAQRLALELRSR 135 >gi|293400498|ref|ZP_06644643.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305524|gb|EFE46768.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 194 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 17/202 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I D ++ID G+ Y +Y I + ++ TLF H+R+D I L Sbjct: 1 MIAFIRGTIHSYSNDSLIIDNNGIGYRVY--IANPQAV-RLNTEVTLFTYQHVREDAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + F+ L SV+GVG + A+G+L+ A ++ +I + K + +PGI K Sbjct: 58 FGFTSMEEHDLFLQLISVKGVGPKTALGMLAVCPAKNMIMAIENNDVKTLKGLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LK K +V++ KE A + ++AI AL LGY + ++ Sbjct: 118 ASQIVLDLKNK------LVEEVTEIEAKENAQL-------LDAIEALKALGYKNAEISSV 164 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 ++ E++ D Q IR AL Sbjct: 165 KKELMAMEESTTSD-QYIRKAL 185 >gi|291456789|ref|ZP_06596179.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM 20213] gi|291382066|gb|EFE89584.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM 20213] Length = 208 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y + LS L G ++ ++ QD + L Sbjct: 1 MIGMLTGRVESVEADTALIDVGGVGYEVRMSATDLSRL-HTGTEARVYTYMNLSQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL ++ F+ L V G+G +VA +LS +TA +L +I ++ +A+ PG+ K Sbjct: 60 HGFLDQASKKTFLQLIKVSGIGPKVAQSLLSTLTAGQLARAIADNDAAALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179 A +I+ ELKG +I LS + S K QA + SM I L++LG+ Q A Sbjct: 120 AQKIILELKG-SIDLSQIEGASPSGA-KVQAQVDTSMEQV----IEGLISLGWRQQDAQQ 173 Query: 180 AVVSVLKKEK-----NIADDSQIIRLAL 202 AV + + D +++RLAL Sbjct: 174 AVAEACEDNDIPTPLDTDDVPRVLRLAL 201 >gi|167037426|ref|YP_001665004.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040093|ref|YP_001663078.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514] gi|256752590|ref|ZP_05493444.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus CCSD1] gi|300914176|ref|ZP_07131492.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561] gi|307724588|ref|YP_003904339.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513] gi|320115839|ref|YP_004185998.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|229560136|sp|B0K955|RUVA_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560137|sp|B0K0L7|RUVA_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166854333|gb|ABY92742.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514] gi|166856260|gb|ABY94668.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748528|gb|EEU61578.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus CCSD1] gi|300889111|gb|EFK84257.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561] gi|307581649|gb|ADN55048.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513] gi|319928930|gb|ADV79615.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 187 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G IE + +DYV+ID G+ ++ P TL L G+ L+ +R+D ++ Sbjct: 1 MIEYVRGIIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLQVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS ++ V+++ + K + PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNAGDYKALTVAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V + D + N+ A+ AL+ LGY + +A A Sbjct: 121 AERIILELKDK-LPKEIVFEGDNNFSNE--------------ALEALLALGYTKSEAIYA 165 Query: 181 VVSV 184 + + Sbjct: 166 LADI 169 >gi|239827859|ref|YP_002950483.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70] gi|259495646|sp|C5D5E9|RUVA_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239808152|gb|ACS25217.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 111/207 (53%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ + +Y++ID G+ Y I+ P S T++ ++R+D + L Sbjct: 1 MIEFVRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDTLAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ +LVE+I +N + + PG+ K Sbjct: 60 YGFRTREERTLFAKLLQVSGIGPKGGLAILAAGQPEQLVEAIEQENETFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178 A +++ +LKGK ++++ D+ + +E A H+ ++ AI AL LGY + + Sbjct: 120 ARQMILDLKGKLTAVTAKTFPDLFHLQEESARPHLSALE----EAIEALKALGYAEREIQ 175 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V S++K +N++ D Q ++ AL+ + Sbjct: 176 KVVPSLMK--ENLSTD-QYVKRALQQL 199 >gi|90411664|ref|ZP_01219674.1| Holliday junction DNA helicase motor protein [Photobacterium profundum 3TCK] gi|90327554|gb|EAS43907.1| Holliday junction DNA helicase motor protein [Photobacterium profundum 3TCK] Length = 206 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 14/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD---FCTLFVETHMRQDQ 57 MIG++ G I VLIDV G+ Y + P+ L ++G CT F+ +R+D Sbjct: 1 MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFI---VREDA 57 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF +R+ F + GVG ++ + +LS +TA++ V S+ ++ + +IPG+ Sbjct: 58 QLLYGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVG 117 Query: 118 MKIASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 K A R++ E LKG D + N E S + A+SAL+ LGY Sbjct: 118 KKTAERLVIEMRDRLKGWGEGDLFTPASDAAASNAEVQQYSSARA-EDEAVSALIALGYK 176 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA V V+K E + IIR ALR++ Sbjct: 177 APQAAKVVSQVVKPEMS---SENIIREALRSM 205 >gi|261405408|ref|YP_003241649.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10] gi|261281871|gb|ACX63842.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10] Length = 205 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +Y+++DVQGV Y ++CP K T+F H+R+D I L Sbjct: 1 MIDFLRGQVVHLESEYIVLDVQGVGYRVFCP--NPYAFAKTEGTVTVFTHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G RVA+G+L + +V +I +N + ++PGI K Sbjct: 59 FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118 Query: 121 ASRIMTELKGK 131 A R++ +LK K Sbjct: 119 AQRMILDLKDK 129 >gi|256788881|ref|ZP_05527312.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24] gi|289772769|ref|ZP_06532147.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24] gi|289702968|gb|EFD70397.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 17/200 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +I+V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVATLAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ ELK G+ I + V +S ++Q H +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGEPIG-APAVGAPVSTGWRDQLH------------AALIGLGYATREA 166 Query: 178 TTAVVSVLKKEKNIADDSQI 197 AV +V + + Q+ Sbjct: 167 DEAVSAVAPQAEAAGGTPQV 186 >gi|186477304|ref|YP_001858774.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815] gi|229560012|sp|B2JGU4|RUVA_BURP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|184193763|gb|ACC71728.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815] Length = 193 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++LID GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPGTGEKVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGIGARMALAVLSGMSVQELSQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++AL+ LGY + + A Sbjct: 121 AERLLL-------ELKGKLGADLGAM----AGAASQSDHASDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|329926780|ref|ZP_08281188.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5] gi|328938980|gb|EGG35348.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5] Length = 205 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +Y+++DVQGV Y ++CP K T+F H+R+D I L Sbjct: 1 MIDFLRGQVVHLESEYIVLDVQGVGYRVFCP--NPYAFAKTEGTVTVFTHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G RVA+G+L + +V +I +N + ++PGI K Sbjct: 59 FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118 Query: 121 ASRIMTELKGK 131 A R++ +LK K Sbjct: 119 AQRMILDLKDK 129 >gi|300934559|ref|ZP_07149815.1| Holliday junction DNA helicase RuvA [Corynebacterium resistens DSM 45100] Length = 208 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 112/221 (50%), Gaps = 33/221 (14%) Query: 1 MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQD 56 MI ++G + +GL DYV+++ GV Y +C T + +G + FV T + R+D Sbjct: 1 MIASLRGTVIDKGL--DYVVVECSGVGY--HCHT-TPAIVGTLERGTEAFVLTTLVVRED 55 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+ F RQ F+ LQ V GVGARVA+ ++S +T EL ++ ++K + + PG+ Sbjct: 56 AQTLYAFTDSDQRQTFLALQKVSGVGARVALAIMSVLTPAELAAAVAEGDAKTLQRAPGV 115 Query: 117 SMKIASRIMTELKGKAISLSSVVQ----------QDMSCVNKEQAHICSMPSFAINAISA 166 ++A R++ +LKGK +LSS V Q +S +EQ A Sbjct: 116 GKRLAERMVVDLKGKLGALSSEVSTPGAPSPDSPQGLSDSVREQVE------------EA 163 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIA--DDSQIIRLALRAI 205 LV LG+ + +A + V + + ++ D S ++R AL I Sbjct: 164 LVGLGFTEAKAASTVSQAVARTEDAGLLDASSLLRAALAQI 204 >gi|256026581|ref|ZP_05440415.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D11] gi|289764586|ref|ZP_06523964.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11] gi|289716141|gb|EFD80153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11] Length = 194 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 82/145 (56%), Gaps = 1/145 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145 A I+ +LKGK +L+ ++ +S Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV 144 >gi|197335439|ref|YP_002155714.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11] gi|226698745|sp|B5FCQ1|RUVA_VIBFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|197316929|gb|ACH66376.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11] Length = 207 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 4/192 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GN+ +LI+V G+ Y + P+ L ++G ++ +R+D L Sbjct: 1 MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + D + ++ I S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180 Query: 177 ATTAVVSVLKKE 188 A+ V V K + Sbjct: 181 ASKTVSQVAKPD 192 >gi|21673101|ref|NP_661166.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS] gi|25453273|sp|Q8KFR0|RUVA_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|21646174|gb|AAM71508.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 108/207 (52%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + + +++V G+ Y+++ T L G LF ++R+D +L Sbjct: 1 MFAFLRGELVTVSREEAVVEVSGIGYLLHISSGTSRRLPPEGSQVRLFTHHYVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + + Q F LL ++ GVG ++AM VLS ++ E+ E+I+ + + I G+ K Sbjct: 61 FGFLDEEELQLFRLLLTIGGVGPKLAMAVLSGLSVGEIQEAIVANRPETLYGITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--AISALVNLGYGQDQAT 178 ASRI+ EL+ K + + + + + +N A++AL+ LG+ + A Sbjct: 121 ASRIILELRDKILKIQPAASGKTAGAPQ---------ALQLNEDALAALMTLGFPKPAAQ 171 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ +L+ ++ + +++R AL AI Sbjct: 172 KAISGILETSPGLSVE-EVVRAALIAI 197 >gi|297569179|ref|YP_003690523.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus AHT2] gi|296925094|gb|ADH85904.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus AHT2] Length = 215 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 19/220 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D +++ V GV Y ++ P L +G+ L+++T +R+D L Sbjct: 1 MIASLQGKLAHKGPDSLVLQVGGVGYEVFLPASRHDRLPAVGEELFLYIQTVVREDSFNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL V GVG R+AM +L+ L +II + + ++PG+ K Sbjct: 61 YGFPDSREKRMFQLLLGVSGVGPRLAMNILAAAEPAALSRAIIAGDIVFLKKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--------SMPSFAINAISALVNLGY 172 A R+ EL K + + V A + PSF +A SAL+NLGY Sbjct: 121 AERLCLELGDKMEFFPTATTDAGTVVGPGAALSPSSAAAADFNEPSFQ-DAYSALLNLGY 179 Query: 173 GQDQATTAVVSVLKKEKNIADDS------QIIRLALRAIS 206 QA A L+ ++ AD S +++R ALR+++ Sbjct: 180 PASQARAA----LEGLRSAADVSLELPVEELLRQALRSLA 215 >gi|269956459|ref|YP_003326248.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica DSM 15894] gi|269305140|gb|ACZ30690.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica DSM 15894] Length = 207 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 7/185 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + D +IDV GV Y+++ TL+ L + G+ LF +R++ + L Sbjct: 1 MIASLTGVVEHVSLDRAVIDVGGVGYLVHATPGTLAGL-RTGERARLFTTMVVREESMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F D +R F QSV GVG R+A+ VL+ T + ++ Q+ K + ++PGI K+ Sbjct: 60 YAFTDDDERALFETAQSVSGVGPRIALAVLAVHTPDAVRRAVHTQDVKALTRVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK L + + + ALV LGY A A Sbjct: 120 AQRILLELGGK---LGAPTGDGAAGSGATAGTGGDQRG---KVVEALVGLGYPAKTADDA 173 Query: 181 VVSVL 185 V VL Sbjct: 174 VARVL 178 >gi|90134315|sp|Q6F992|RUVA_ACIAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++ F L V GVG ++A+G+LS ++ + +I + + ++PG+ K Sbjct: 60 YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L SV S V Q S A A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKAL-SVQATTGSTVTSAQIQFSSNSPIA-EAEAALQSLGYKPIEAQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V AD +IR AL+++ Sbjct: 178 IAAVKADYTEAAD---LIRAALKSM 199 >gi|153809430|ref|ZP_01962098.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185] gi|149128016|gb|EDM19238.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185] Length = 201 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + L +ID GV Y + T S + GK C LF+ +R+D Sbjct: 1 MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KTCKLFIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ +ELV I +N+ ++ + GI +K Sbjct: 59 LYGFADKQEREIFLLLISVSGIGGNTARMILSALSPSELVSVISAENANLLKTVKGIGLK 118 Query: 120 IASRIMTELKGK-------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ ELK K A+ ++ + N E A++AL LG+ Sbjct: 119 TAQRLIVELKDKIKTVGMAAVGGTTSAGMLLQSANAEVQE---------EAVAALTMLGF 169 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + V++VLK+E A ++I+LAL+ Sbjct: 170 AAAPSQKVVLAVLKEEPE-APVEKVIKLALK 199 >gi|150004217|ref|YP_001298961.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus ATCC 8482] gi|254884765|ref|ZP_05257475.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA] gi|294774978|ref|ZP_06740508.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510] gi|319644172|ref|ZP_07998697.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp. 3_1_40A] gi|166230518|sp|A6L0X5|RUVA_BACV8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149932641|gb|ABR39339.1| Holliday junction DNA helicase ruvA [Bacteroides vulgatus ATCC 8482] gi|254837558|gb|EET17867.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA] gi|294451187|gb|EFG19657.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510] gi|317384294|gb|EFV65265.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp. 3_1_40A] Length = 197 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I + V++D G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAIQNQSN-TKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + VN E A++AL LG+ Q A+ Sbjct: 120 AQRIIVDLKDK------IATSGVETVNSEMFANPGNTEIHDEAVAALTMLGFAQ-AASQK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 VV+ + KE+ A ++I+LAL+ Sbjct: 173 VVAAILKEEPAAPVEKVIKLALK 195 >gi|300723091|ref|YP_003712389.1| Holliday junction helicase subunit A [Xenorhabdus nematophila ATCC 19061] gi|297629606|emb|CBJ90209.1| Holliday junction helicase, subunit A [Xenorhabdus nematophila ATCC 19061] Length = 205 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L +IG LF + +R+D L Sbjct: 1 MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQQAILFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N A S A +ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPAAAKQTNSDADIEAEAAAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V+K AD +IR ALRA Sbjct: 181 RMVSKVVKPG---ADCETLIREALRA 203 >gi|262404190|ref|ZP_06080745.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586] gi|262349222|gb|EEY98360.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586] Length = 204 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 109/209 (52%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A I S+P+ A N AISAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSVPALAQNAQDEAISALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV + K + ++IR AL+++ Sbjct: 178 ASKAVSQIAKAGMSC---EELIREALKSM 203 >gi|149375111|ref|ZP_01892883.1| Holliday junction DNA helicase motor protein [Marinobacter algicola DG893] gi|149360475|gb|EDM48927.1| Holliday junction DNA helicase motor protein [Marinobacter algicola DG893] Length = 210 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 17/214 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQI 58 MIG+I+G + L++ G+ Y + P T L + G L + TH +R+D Sbjct: 1 MIGRIRGILIEKSPAQALVECAGLGYEVDIPYTTFFNLPETG--AELVLHTHFVVREDAQ 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S LDR F LL V GVG ++A G+LS + A + + + +++ + ++PG+ Sbjct: 59 SLYGFSSRLDRDLFRLLIKVNGVGPKLAAGILSGLDANQFIRCVEARDANALVKLPGVGK 118 Query: 119 KIASRIMTE-------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 K A R++ E L+G+ I S N A + + A +AL+ LG Sbjct: 119 KTAERLLIEMTDRIGQLEGQFIPASPNATVTSDSAN---AGVVAGHDPREEAEAALIALG 175 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 Y +A+ A+ V ++ + ++IRLALRA+ Sbjct: 176 YKPQEASKAISKVAEESMS---SQELIRLALRAM 206 >gi|332878042|ref|ZP_08445772.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684004|gb|EGJ56871.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 200 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI +KG I L +ID GV Y + + T S L GK L+V +R+D Sbjct: 1 MIEYVKGQIAELTPAIAVIDCHGVGYGLNISLNTFSALQGK--QEAKLYVYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F+LL SV G+G A +LS +T ELV I N K++ + GI +K Sbjct: 59 LYGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LK K ++SV + + A++AL LG+ + Sbjct: 119 TAQRIIVDLKDK---IASVEIEGTAAPGTSATAATGHSEILEEAVAALTMLGFPPAPSQK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 +++LK+E A + ++I+LAL+ Sbjct: 176 VALAILKEEPEAAVE-RVIKLALK 198 >gi|322382934|ref|ZP_08056766.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153054|gb|EFX45512.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 207 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DYV+IDV GV Y ++C + G+ TLF+ H+R+D L Sbjct: 1 MIDYLRGQLAVREMDYVVIDVHGVGYQVFCS-NPFGISAREGEEVTLFIHYHVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L V G+G +VA+G+L+ ++ +I +N + ++PGI K Sbjct: 60 FGFTTREEQTLFRKLIEVSGIGPKVALGILTGGRPDAVIAAIQQENVGFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K L + + +++ + E A SM A AL+ LGY + +A Sbjct: 120 AQRIILDLKDKLGLLPASIVDEVAVLTAE-AERNSMEGCWAEAKQALLALGYTETEADRT 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K + +LAL+A+ Sbjct: 179 WHLIQKDVKPADPVDTVTKLALKAL 203 >gi|90417110|ref|ZP_01225038.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2207] gi|90331126|gb|EAS46382.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2207] Length = 199 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 107/209 (51%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LIDVQGV Y + + T + +G+ TL +R+D +L Sbjct: 1 MIGRLQGKVIEKQAPDLLIDVQGVGYEVLVSLNTFFGVPGVGEITTLHTHFVVREDVQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISM 118 +GF + +RQ F L V GVG ++A+ +LS ++A + +I + N+ + + ++PG+ Sbjct: 61 YGFGTQSERQLFRHLIKVNGVGPKMALAILSGMSANDF--AICVHNNDIATLVKLPGVGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ E++ K + D + + P + A SAL+ LGY A Sbjct: 119 KTAERLLIEMRDK------IGDMDATAAGSATGAQEAKPDISQEAESALIALGYKPADAA 172 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207 + V + N D ++IRLAL+++ Sbjct: 173 KIISRVATESVN--DAGELIRLALKSMGS 199 >gi|309789628|ref|ZP_07684209.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6] gi|308228364|gb|EFO82011.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6] Length = 198 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 113/208 (54%), Gaps = 20/208 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G + + D+++I+ GV +++Y P L G + + T+F+ THM R+D + Sbjct: 1 MIASLRGTLIHIGSDHLVIETGGVGWLVYAPRSVLGACGALNE--TIFLYTHMIVREDAL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + R F L SV GVG +V + +LS + ++ + N+ +A++PGI Sbjct: 59 LLYGFQTLEQRALFESLLSVSGVGPKVGLSLLSAGSPDDIRLMVAQNNTTALARVPGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA--LVNLGYGQDQ 176 K A R++ ELKGK D+ + + + PS A+NA A LV+LGY + Sbjct: 119 KTAERLVLELKGK---------LDLKGLPTAAGGVAAAPS-ALNAELAELLVSLGYSSAE 168 Query: 177 ATTAVVSVLKKEKNIADDSQI-IRLALR 203 A+ AV S+ + +D ++ +RLALR Sbjct: 169 ASAAVASL---PADAPEDLEVRLRLALR 193 >gi|170693379|ref|ZP_02884538.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M] gi|170141534|gb|EDT09703.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M] Length = 193 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLGAM----AGTVSASGHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 V KN+ S+ I+LAL+A+S Sbjct: 170 V-------KNVPAGTGVSEGIKLALKALS 191 >gi|257066397|ref|YP_003152653.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM 20548] gi|256798277|gb|ACV28932.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM 20548] Length = 195 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 8/176 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G++ + ED +I+ + Y+I+ ++TLS + +I + ++ +R+D I L Sbjct: 1 MISYIIGHVRSIKEDSFIIENNNMGYLIFSSLKTLSNI-EINNEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F LL SV +G ++AMG+LS I+ E+ +II + + GI K Sbjct: 60 FGFFTKDELEMFTLLTSVSTIGPKIAMGILSSISVNEIKTAIINNDIDKLTVAKGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ASRI+ EL K + V +++ +K+ I A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMDFVPVENIELNSKDNEEIDV-------AREALLNLGYEKND 168 >gi|110636455|ref|YP_676662.1| Holliday junction DNA helicase [Cytophaga hutchinsonii ATCC 33406] gi|123354887|sp|Q11Z44|RUVA_CYTH3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110279136|gb|ABG57322.1| Holliday junction DNA helicase subunit RuvA [Cytophaga hutchinsonii ATCC 33406] Length = 199 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + +V++DVQG+ Y I + T S L + + + H+++D L Sbjct: 1 MIAYIEGKLAHKDPTFVVVDVQGIGYHIRVSLHTFSQLKDL-ERVKIHTFLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++++ F+ L S+ G+G A+ VLS + EL E+I ++ K I + GI +K Sbjct: 60 FGFADLMEKEMFLHLTSISGIGPGTALVVLSSMNPIELKEAIAREDVKTIQSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK K +++D ++ + +Q S S A++AL+ LG+ + A Sbjct: 120 AQRVILELKDK-------MKKDALLAGSDSKQNFSVSHNSIRSEALTALITLGFTKTVAE 172 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 + +LK N +I+ AL+ Sbjct: 173 KNLDLILKGNSNSFTLEDLIKQALK 197 >gi|260102901|ref|ZP_05753138.1| crossover junction endoribonuclease subunit A [Lactobacillus helveticus DSM 20075] gi|260083290|gb|EEW67410.1| crossover junction endoribonuclease subunit A [Lactobacillus helveticus DSM 20075] Length = 196 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 10/161 (6%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 Y+++DV GV Y +Y P T K GD +F+E +R I L+GF S+ D++ F+ L Sbjct: 16 YIVVDVNGVGYKVYSP--TPFAYQK-GDKAKIFIEQVVRDTGITLYGFQSEDDKELFLKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV G+G + A+ +++ A L E+I K + + PG+ K AS+I+ +LKGK L Sbjct: 73 LSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---L 129 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 V + + ++EQ +I P +A+ AL+ LGY Q + Sbjct: 130 RDYVAR-LDRQDEEQGNI---PPALNDALLALIALGYTQKE 166 >gi|302874957|ref|YP_003843590.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] gi|307690425|ref|ZP_07632871.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] gi|302577814|gb|ADL51826.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] Length = 194 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 15/187 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+ +DY++I+ G+ Y I+ T++ L I ++++ +R+D I L Sbjct: 1 MYEYIKGIYKGIKKDYLIIENNGIGYKIFTSGGTIAALPSIDKEVFIYLKQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F +L ++ GVG + A+ +LS T L +I + I + PGI K Sbjct: 61 YGFATQEELELFTMLLNINGVGTKAALSLLSIGTVNNLKYAIATSDENFITKAPGIGKKT 120 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ ELK K + LS + ++ V + A+ AL+ LGYG+ +A Sbjct: 121 AQRIILELKDKLSKEVPLSHTSENIITNV------------YVDEALEALIALGYGEKEA 168 Query: 178 TTAVVSV 184 A+ +V Sbjct: 169 EKAIANV 175 >gi|187935379|ref|YP_001885221.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str. Eklund 17B] gi|229560022|sp|B2TMZ1|RUVA_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187723532|gb|ACD24753.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str. Eklund 17B] Length = 198 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 104/185 (56%), Gaps = 7/185 (3%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG G+ +DY++I+ G+ Y I+ T+S + G+ L++E +R+D I L+GF Sbjct: 5 IKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKLYIEQIVREDFIGLYGFE 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S + + F +L S+ GVGA+ A+ +LS L +II + K + + GI K A+RI Sbjct: 65 SLEELEMFKMLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGVGIGKKTAARI 124 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVS 183 + ELK K + + ++C++ E + S A++ A+SAL++LGY + +A + Sbjct: 125 ILELKDKLKT-----DELLNCID-EFDDVTQDNSLAVSEALSALISLGYTEKEAEKVLRD 178 Query: 184 VLKKE 188 V K E Sbjct: 179 VDKSE 183 >gi|225023395|ref|ZP_03712587.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC 23834] gi|224943873|gb|EEG25082.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC 23834] Length = 193 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G + V+IDV GV Y ++T L +G+ +L+ + +R+D L Sbjct: 1 MISKLTGKLIEAIPPQVVIDVNGVAYEADVSMQTFYTLPPVGETVSLYTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL +I ++ K ++ PGI K Sbjct: 61 FGFGSHSERNTFRQLIKVSGIGAKTALGILSAMNADELAAAIAAEDIKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + V Q + I +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLTTFNGVQTQLAAQAGDSSEDI----------VSTLLALGYNEKEARAA 170 Query: 181 VVSVLKKEKNIADDSQI---IRLALR 203 K I D+++ +RLAL+ Sbjct: 171 T-------KGIPADTEVGEGVRLALK 189 >gi|50085685|ref|YP_047195.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. ADP1] gi|49531661|emb|CAG69373.1| holliday junction helicase subunit A [Acinetobacter sp. ADP1] Length = 204 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 4 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++ F L V GVG ++A+G+LS ++ + +I + + ++PG+ K Sbjct: 63 YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L SV S V Q S A A +AL +LGY +A A Sbjct: 123 AERLMIELRDRFKAL-SVQATTGSTVTSAQIQFSSNSPIA-EAEAALQSLGYKPIEAQKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V AD +IR AL+++ Sbjct: 181 IAAVKADYTEAAD---LIRAALKSM 202 >gi|183601646|ref|ZP_02963016.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis HN019] gi|219683820|ref|YP_002470203.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis subsp. lactis AD011] gi|241190856|ref|YP_002968250.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196262|ref|YP_002969817.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254766944|sp|B8DUE8|RUVA_BIFA0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183219252|gb|EDT89893.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis HN019] gi|219621470|gb|ACL29627.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis subsp. lactis AD011] gi|240249248|gb|ACS46188.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250816|gb|ACS47755.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793845|gb|ADG33380.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis V9] Length = 207 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 18/213 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG +E + ++DV GV + + P L+ + +G ++ + QD I L Sbjct: 1 MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL ++ F+ LQ V GVG +VA+ +LS + +L ++I + K +++ PG+ K Sbjct: 60 FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG +I + + + + + + L++LG+ Q A A Sbjct: 120 AQKIILELKG-SIDVDKIETGEPTSTQR-----IPTDKGVEQVVEGLMSLGWKQADAQQA 173 Query: 181 VVSVLK--------KEKNIADDSQIIRLALRAI 205 V SV+ +E N+ ++RLAL ++ Sbjct: 174 VDSVISSSGIALPLEEGNVP---TVLRLALTSL 203 >gi|153810824|ref|ZP_01963492.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174] gi|149833220|gb|EDM88302.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174] Length = 203 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 10/189 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + E+ V+++ G+ Y I+ ++ + +I + +R+D ++L Sbjct: 1 MISFIRGLVADTTENAVILENNGIGYEIFMTGSSIEQVSRIDGEVKIHTYFQVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + A+GVL+ +TA EL +++ + K I++ PGI K Sbjct: 61 YGFLSKDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A +++ ELK K + L ++ ++ + S+ F I+ A AL+ LGY Sbjct: 121 AQKLILELKDK-LKLEDAFEKKLA----HEQEAASVSGFLIHDGRQEAAEALIALGYSST 175 Query: 176 QATTAVVSV 184 A AV V Sbjct: 176 DAMKAVRKV 184 >gi|311742330|ref|ZP_07716139.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium marinum DSM 15272] gi|311313958|gb|EFQ83866.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium marinum DSM 15272] Length = 199 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 24/213 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D V++DV GV Y+ C T++ L +IG L +R+D + + Sbjct: 1 MIASLRGTVAAVSLDSVVLDVGGVGYLTRCTPGTIAGL-RIGQEAQLATTLVVREDSMTV 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L+Q+ GVG +VA+ +L+ + L ++I + + +PGI K Sbjct: 60 YGFADATERDMFELVQTASGVGPKVALAMLAVLDPDRLRQAIAQADHSTLMSVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + L+ + +EQ H AL+ LG+ A A Sbjct: 120 AERIVVELKDR-VGLAGSAAPTGAPAWREQVH------------EALLGLGWPARDAERA 166 Query: 181 VVSVLKKEKNIADD-------SQIIRLALRAIS 206 V +V ++ADD S ++R ALR+++ Sbjct: 167 VDNV---AADLADDPGAAADVSTLLRDALRSLA 196 >gi|213963573|ref|ZP_03391826.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena Capno] gi|213953853|gb|EEB65182.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena Capno] Length = 194 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +V+ID GV Y + + T S L + G+ L+ +++D L Sbjct: 1 MITQLQGKLIEKNPTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA + +II + I + GI K Sbjct: 60 YGFLTKAEREVFVLLLSVSGVGASTARTMLSSLTAAHVRSAIINGDVATIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L QD E+ I ++ + A++AL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKL-----QDF-----EEVSINTLNTNKEEALAALEVLGFVRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V +++K +II+ AL+ Sbjct: 170 VDTIVKLNNEELSVEEIIKQALK 192 >gi|288555342|ref|YP_003427277.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4] gi|288546502|gb|ADC50385.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4] Length = 205 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 16/180 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + + YV++D QG+ Y IYCP ++ + ++ H+R+D IRL Sbjct: 1 MIDYINGVLVDIETRYVVLDHQGLGYQIYCP-NPYQFSKQLDEKVKIYTYQHVREDLIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L +V G+G + A+ +L+ +V +I ++ + + PG+ K Sbjct: 60 FGFESKSERALFEKLLNVSGIGPKGALAILASGQPEHVVRAIEEEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSS--------VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +I+ +LKGK S +V + M+ VNKE + A+ AL LGY Sbjct: 120 ARQIILDLKGKLDEFSPNLFNESTGLVSEKMTKVNKENTELEE-------ALEALRALGY 172 >gi|306836241|ref|ZP_07469223.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium accolens ATCC 49726] gi|304567833|gb|EFM43416.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium accolens ATCC 49726] Length = 202 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y +TL L + G+ + +++D + L Sbjct: 1 MIAALRGEVLHIGLDHGVIECSGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179 A R+ ELK K + D + +A P +++++ AL+ LG+ ++A Sbjct: 120 AQRLTLELKDKVKRFAGTPAPDAA----PEATGAGGP--VVDSVTEALLGLGF-TEKAAR 172 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 VV E AD S ++R AL Sbjct: 173 PVVEAAYAEAPAADTSTLLRAAL 195 >gi|53804471|ref|YP_113686.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str. Bath] gi|81682299|sp|Q609L1|RUVA_METCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|53758232|gb|AAU92523.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str. Bath] Length = 201 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + +LIDVQG+ Y + P+ T L +IG L+ +R+D L Sbjct: 1 MIGFIRGLLVAKRAPSLLIDVQGLGYELDAPMSTFYNLPEIGAEVRLYTHLQIREDAHSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L V G+GA++A+ +LS I+ + + Q+S + ++PGI K Sbjct: 61 FGFGTEAERGLFRSLIRVSGIGAKLALAILSGISVDDFRACVERQDSARLVRLPGIGKKT 120 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL+ + I + S+ + A+SAL+ LG+ +A T Sbjct: 121 AERLIIELRDRLDIGVPSLAPASFAGGAAPLPAADPA----DEAVSALIALGFKPQEANT 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 +V+ E A+D +IR AL++ Sbjct: 177 -LVARQAAEGRSAED--LIRAALQS 198 >gi|291530842|emb|CBK96427.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum 70/3] Length = 199 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +ID GV Y TLS L KIG+ L +R+D + L Sbjct: 1 MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F +L SV GVG + A+ +LS +T + + K + PGI K Sbjct: 60 FGFYDAAELNCFKMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFA-INAISALVNLGYGQDQAT 178 A RI+ ELK K V +QD++ K A I + PS A+SAL+ LGY +A Sbjct: 120 AERIVLELKDK------VSKQDVAAGVKGSAVPIVAAPSNTYAEAVSALMVLGYSNGEAA 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A+ + A ++IR L+ ++ Sbjct: 174 SALSGL----DPSAPSDELIRAGLKKLA 197 >gi|90022179|ref|YP_528006.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus degradans 2-40] gi|122996073|sp|Q21HN5|RUVA_SACD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89951779|gb|ABD81794.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus degradans 2-40] Length = 207 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 11/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + ++LID+ GV Y + P+ T L +G+ L + + +L Sbjct: 1 MIGRLTGILAEKKAPHLLIDIGGVGYDVIAPMTTFYRLPALGEKAVLHTHFSVSETSQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S DR+ F +L V GVG ++A+G++S + +++ + ++ N + ++PG+ K Sbjct: 61 FGFSSQQDRELFRMLIKVNGVGPKLAVGIMS-MESSDFAKCVLDGNLTALVKLPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAINAI-----SALVNLGYGQ 174 A R++ +++ + +L + + E A I + P N I SAL+ LGY Sbjct: 120 AERLLVDMRDRVKALDTTPSE--HSPTGEGAGIVRVDPVINTNVIIADAESALIGLGYKP 177 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A AV + ++D +IR AL+ + Sbjct: 178 TEAAKAVSAAYNDTITTSED--LIRAALKGM 206 >gi|237744846|ref|ZP_04575327.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1] gi|229432075|gb|EEO42287.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1] Length = 194 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 82/145 (56%), Gaps = 1/145 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ G+ Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145 A I+ +LKGK +L+ ++ +S Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV 144 >gi|289209177|ref|YP_003461243.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix] gi|288944808|gb|ADC72507.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix] Length = 201 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI +++G + + V+ID GV Y + P+ TL+ L + G T+ + TH+ R+D Sbjct: 1 MIARLEGTLISREVNGVVIDAGGVGYEVEVPLSTLAALPEPG--ATVVLTTHLVVREDAH 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +LFGF+ DR F L V G+GA++A+ +LS EL I + +A++PGI Sbjct: 59 QLFGFMHKRDRDLFRRLIRVNGIGAKLALAMLSTYAGDELAGLISGGDVTGLAKVPGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--AISALVNLGYGQDQ 176 + A R++ EL + + + + +P A++ A++AL +LGY + Sbjct: 119 RTAERVVLELGER------LAEMGFAAAPGGADAGADIPGAAMDGEALAALESLGYPRAS 172 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A V +V + ++ ++RLALRA Sbjct: 173 AEKMVAAVRDQADSV---ESLVRLALRA 197 >gi|59711558|ref|YP_204334.1| Holliday junction DNA helicase motor protein [Vibrio fischeri ES114] gi|71649480|sp|Q5E6A0|RUVA_VIBF1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|59479659|gb|AAW85446.1| component of RuvABC resolvasome, regulatory subunit [Vibrio fischeri ES114] Length = 207 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 4/192 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GN+ +LI+V G+ Y + P+ L ++G ++ +R+D L Sbjct: 1 MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + D + ++ I S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180 Query: 177 ATTAVVSVLKKE 188 A+ V + K + Sbjct: 181 ASKTVSQIAKPD 192 >gi|291557651|emb|CBL34768.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum V10Sc8a] Length = 199 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +ID GV Y TLS L KIG+ L +R+D + L Sbjct: 1 MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F +L SV GVG + A+ +LS +T + + K + PGI K Sbjct: 60 FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFA-INAISALVNLGYGQDQAT 178 A RI+ ELK K V +QD++ K A I + PS A+SAL+ LGY +A Sbjct: 120 AERIVLELKDK------VSKQDVAAGVKGSAVPIVAAPSNTYAEAVSALMVLGYSNGEAA 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A+ + A ++IR L+ ++ Sbjct: 174 SALSGL----DPSAPSDELIRAGLKKLA 197 >gi|306822725|ref|ZP_07456103.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium dentium ATCC 27679] gi|304554270|gb|EFM42179.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium dentium ATCC 27679] Length = 205 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 20/213 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + LI+V GV Y I P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASM-HAGQEVKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178 A +I+ ELKG +I LS + + A + S P + + + L++LG+ Q A Sbjct: 120 AQKIILELKG-SIDLSQI---------ETAASVISRPEDTGSEQVVEGLISLGWRQQDAL 169 Query: 179 TAVVSVLKKEKNIA------DDSQIIRLALRAI 205 AV V + +IA D ++++LAL ++ Sbjct: 170 HAVQEVCRS-NDIATPLSNEDVPRVLKLALTSL 201 >gi|256375826|ref|YP_003099486.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827] gi|255920129|gb|ACU35640.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827] Length = 198 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +++V GV + + TL L + G+ L +R+D + L Sbjct: 1 MISSLRGQVLSIGLDHAVVEVGGVGFAVQATPATLGSL-RRGEEAVLSTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF RQ F LLQ+V G+G R+A+ L+ + +L ++ + V+ Q+PGI K Sbjct: 60 FGFADADSRQLFGLLQTVSGIGPRLALATLAVLEPEKLRAALAEGSVSVLTQVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L++ D + ++ + AL+ LG+ QA TA Sbjct: 120 AERLVIELRDKVGQLATAPASD---------GVVAVGRVRDQVVEALLGLGFPAKQAETA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VL ++ ++ S ++R AL + Sbjct: 171 VDGVLAEDPSLG-TSVVLRKALSGLG 195 >gi|315224590|ref|ZP_07866416.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga ochracea F0287] gi|314945456|gb|EFS97479.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga ochracea F0287] Length = 194 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + YV+ID GV Y + + T S L + G+ L+ +++D L Sbjct: 1 MITQLQGKLVEKNPTYVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA ++ +II I + GI K Sbjct: 60 YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGEVATIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L + M+ V+ + A++AL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVPMNAVSTHKEE----------ALAALEVLGFMRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++K +II+ AL+ Sbjct: 170 VDIIIKSSSEELSVEEIIKQALK 192 >gi|260494643|ref|ZP_05814773.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33] gi|260197805|gb|EEW95322.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33] Length = 194 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 82/145 (56%), Gaps = 1/145 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ G+ Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145 A I+ +LKGK +L+ ++ +S Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV 144 >gi|160947139|ref|ZP_02094306.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270] gi|158446273|gb|EDP23268.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270] Length = 200 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 112/203 (55%), Gaps = 9/203 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 I G ++ +Y DY++ID G+ Y I+ TL + +GD+ T++ + +++D + LFGF Sbjct: 5 ISGELKFIYNDYIVIDNGGIGYKIFTSNNTLFNV-TVGDYYTIYTDYIVKEDYVALFGFK 63 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + F LL SV +G +VA G+LS ++ L +I+ ++ +A G+ K A +I Sbjct: 64 TMDELSMFKLLVSVNSIGPKVACGILSSMSVDSLKLTIVNGDAVALATAKGVGKKTAQKI 123 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI--SALVNLGYGQDQATTAVV 182 + ELK K IS+ S+ +D+S + E + + S + AL+NLG+ ++ + Sbjct: 124 ILELKDK-ISIDSISSKDISGM--EASTLDSGKDLEKRELVSDALINLGFMKNDIERFLS 180 Query: 183 SVLKKEKNIADDSQIIRLALRAI 205 S+ E I D II+L+++ + Sbjct: 181 SINIDEMEIED---IIKLSMKKL 200 >gi|289178595|gb|ADC85841.1| RuvA [Bifidobacterium animalis subsp. lactis BB-12] Length = 232 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 18/213 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG +E + ++DV GV + + P L+ + +G ++ + QD I L Sbjct: 26 MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 84 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL ++ F+ LQ V GVG +VA+ +LS + +L ++I + K +++ PG+ K Sbjct: 85 FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 144 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG +I + + + + + + L++LG+ Q A A Sbjct: 145 AQKIILELKG-SIDVDKIETGEPTSTQR-----IPTDKGVEQVVEGLMSLGWKQADAQQA 198 Query: 181 VVSVLK--------KEKNIADDSQIIRLALRAI 205 V SV+ +E N+ ++RLAL ++ Sbjct: 199 VDSVISSSGIALPLEEGNVP---TVLRLALTSL 228 >gi|332663957|ref|YP_004446745.1| Holliday junction ATP-dependent DNA helicase ruvA [Haliscomenobacter hydrossis DSM 1100] gi|332332771|gb|AEE49872.1| Holliday junction ATP-dependent DNA helicase ruvA [Haliscomenobacter hydrossis DSM 1100] Length = 196 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++GNI Y++++ GV Y+++ + T S + K + + ++++D L Sbjct: 1 MITYLRGNITQKTPTYIVVETAGVGYLVHISLHTYSQIEK-KEEVKILTHLNIKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG A +LS ++ EL +II + +V + GI K+ Sbjct: 60 YGFAEEAERSLFRHLISVSGVGPTTAQIMLSSLSPDELRAAIIGEQEQVFRAVKGIGPKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K I S D+ Q + A+SALV LG+ Q A Sbjct: 120 AKRIILDLKDKLIKDSG----DLPLTFPSQNNTIRE-----EALSALVALGF-QKIAVQK 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 ++ L K++ I + Q+I+LALR +S Sbjct: 170 ALNHLLKDQAIQNVEQLIKLALRELSA 196 >gi|262171190|ref|ZP_06038868.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451] gi|261892266|gb|EEY38252.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451] Length = 204 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVFCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A I S P+ A N AISAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|147677361|ref|YP_001211576.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum thermopropionicum SI] gi|146273458|dbj|BAF59207.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum thermopropionicum SI] Length = 211 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 12/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + V++DV G+ Y + P+ L+ L G+ L+ +R++ L Sbjct: 16 MISYIKGKLAEVQAGAVVLDVGGIGYRVQVPLSVLNKLPARGEDVLLYTHLAVREEGFFL 75 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +F+ L V G+G +VA+ +L+ + EL II ++ + ++PG+ K Sbjct: 76 YGFSDQNELGFFLKLLGVSGIGPKVALAILTIFSPDELGRIIIGGDTAALTRVPGVGKKT 135 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ +++ ++ +S + +A +A+ AL LGY +A A Sbjct: 136 AGRIILELKDK-VTETTLEREPLSGRSGVEA----------DAVEALEALGYTAAEALKA 184 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V VLK ++I+R ALR Sbjct: 185 VKEVLKGPGQ-PSAAEIVREALR 206 >gi|302517991|ref|ZP_07270333.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78] gi|318057102|ref|ZP_07975825.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actG] gi|333028331|ref|ZP_08456395.1| putative holliday junction DNA helicase RuvA [Streptomyces sp. Tu6071] gi|302426886|gb|EFK98701.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78] gi|332748183|gb|EGJ78624.1| putative holliday junction DNA helicase RuvA [Streptomyces sp. Tu6071] Length = 206 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 15/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V G+ + C TLS L +IG+ + +R+D + L Sbjct: 1 MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ ++ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ ELK G+ + ++ Q + P + +ALV LGY +A Sbjct: 120 AQKLILELKDRLGQPLGTGTLGAQRRAAAGP--------PPWTEQLHTALVGLGYQPREA 171 Query: 178 TTAVVSVLKK---EKNIADDSQIIRLALRAIS 206 AV +V + ++ + + ++R AL+ ++ Sbjct: 172 EEAVEAVTPQAEAQEGVPEIGPLLRAALQTLN 203 >gi|6685961|sp|Q9ZNJ6|RUVA_CLOHI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3892649|dbj|BAA34545.1| ruvA [Clostridium histolyticum] Length = 197 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 103/185 (55%), Gaps = 8/185 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG G+ ++Y++I+ + Y I+ T++ + IG+ L++ +R+D I L+GF Sbjct: 5 IKGTYMGINKEYIVIENGDIGYKIHSSGYTIANMPNIGEHIMLYLTQIVREDFIGLYGFG 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S + + F L +V G+GA+ ++ +LS L +I+L++ K++ + PGI K A RI Sbjct: 65 SKEELELFNKLLTVNGIGAKASLSLLSITNVENLKRAIVLEDEKLLIKAPGIGKKTAQRI 124 Query: 125 MTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183 + ELK K ++L +Q D + + K + I A AL++LGY + + A+ + Sbjct: 125 ILELKDKLDVNLDEGIQTDSNDI-KVSSKILE------EAKEALMSLGYSEKECEKALKN 177 Query: 184 VLKKE 188 V +KE Sbjct: 178 VEEKE 182 >gi|326382127|ref|ZP_08203819.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL B-59395] gi|326198857|gb|EGD56039.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL B-59395] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +I + G + + D+ +++ GV Y + TL L K G L +R+D + L Sbjct: 5 VIASVSGEVIDIALDHAVVECAGVGYKVLATPPTLGSL-KRGGHVRLLTSMMVREDSMTL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM L+ + L ++ ++K + +PGI ++ Sbjct: 64 YGFTDPEARDLFGLLQTVTGVGPRLAMATLAVLEPDSLRRALAESDAKALTTVPGIGKRV 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + S+ A + ALV LG+ + A A Sbjct: 124 AERLVVELRDKVTAGSAGAVPGAPVAAGAGAQVT----------EALVGLGFTEGAAQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL + AD S ++R AL A+ Sbjct: 174 VAAVLADDPG-ADSSSLLRSALTAL 197 >gi|239907719|ref|YP_002954460.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1] gi|259495640|sp|C4XIJ9|RUVA_DESMR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239797585|dbj|BAH76574.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1] Length = 202 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + + + +++ GV Y + P + L G +LFV T +R+D + Sbjct: 1 MIGYLEGRVVARRDRFAIVLTPGGVGYELELPTPVAAALPAPGGQVSLFVHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S DR+ F L + +G R A+ +LS TA +L+ + +++ + ++PGI K Sbjct: 61 LFGFASLDDRETFRTLIGISKLGPRTALAILSHFTADDLLRVVASGDAEALVRVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQ 176 A RI EL K + S+P A + ++ L NLGY + + Sbjct: 121 SAQRIFIELSYK-----------LEGRAPAAGLAPSVPIPGGVAGDVVAGLTNLGYPEPE 169 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 A VL+ E ++ D + +R AL+ ++ Sbjct: 170 ARQVAAEVLEAEPDL-DVAAALRQALKRLAS 199 >gi|86157379|ref|YP_464164.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans 2CP-C] gi|123750528|sp|Q2IPJ6|RUVA_ANADE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85773890|gb|ABC80727.1| Holliday junction DNA helicase subunit RuvA [Anaeromyxobacter dehalogenans 2CP-C] Length = 197 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 12/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +D+ ++DV GV Y+++ +L+ L G+ L V TH+R+D + L Sbjct: 1 MIARLAGRIAEKRDDHAIVDVGGVGYLVHVSQLSLASLPPPGEPAALRVYTHVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F L V+GVG R A +LS I A EL +++ + + ++ GI K Sbjct: 61 YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYGQDQATT 179 A R++ ELK K ++L+ + + ++ + +AL+NLGY QA Sbjct: 121 AERLVVELKDKLVALARAAGPARAGAEAD----------VLDQLRTALLNLGYRPPQA-E 169 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V L+ +++R AL+ Sbjct: 170 GVAEALRDSAEGRPLDELLREALK 193 >gi|294669790|ref|ZP_06734856.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308356|gb|EFE49599.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 194 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 19/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L + + L+ + +R+D L Sbjct: 1 MISRLTGKLIEKQPPQIVIDVNGVAYEADVSMQTFYNLPPLNETVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFGTAAERATFRQLVKVSGIGAKTALGILSAMTADELAQAVAQEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK LS D + A + I L+ LGY +A A Sbjct: 121 AERMILELRGK---LSGGTVSDGLFAQPQAADETD------DIIGTLLALGYSDREARAA 171 Query: 181 VVSVLKKEKNIADDSQI---IRLALR 203 V K IA +++ +RLAL+ Sbjct: 172 V-------KGIAPGTEVGEGVRLALK 190 >gi|291280036|ref|YP_003496871.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans SSM1] gi|290754738|dbj|BAI81115.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans SSM1] Length = 191 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 13/176 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + ++++++ G+ Y I + T S L + G +FV+ +++D I L Sbjct: 1 MINYINGKLVFKKPEFIVLETFGIGYHINISLNTFSKLPEEGANLKIFVQQIVKEDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++F LL V VG ++A+ +LS EL E I+ +N +A IPGI K Sbjct: 61 YGFFDEAEKEFFNLLIKVSKVGPKLALSILSGFNVDELKECIVSKNHIKLASIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A RI+ ELK K ++ VV +D E + +SAL+NLGY + + Sbjct: 121 AERIVLELKDKLDNV-EVVSEDGDVQILE------------DVVSALINLGYKKQE 163 >gi|258593140|emb|CBE69451.1| Holliday junction DNA helicase ruvA [NC10 bacterium 'Dutch sediment'] Length = 208 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 5/171 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++IDV GV Y ++ P+ T L +I L + TH+R+D I+L Sbjct: 1 MIAQLRGLLASKDPGQIVIDVNGVGYQVFVPLSTFYQLPEIQQEVHLRIYTHVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F LL V G+G R+A +LS I E + +++ ++ + IPG+ K Sbjct: 61 YGFHAIEERITFELLTGVSGIGPRLAANILSGIAVEEFIPAVLEGDTARLKAIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 A RI+ ELK K ++ V + V+++ + + +SAL+NLG Sbjct: 121 AERIILELKDK---VTEVPCRGRVVVDRQPS--PERDRTIEDVVSALLNLG 166 >gi|311694932|gb|ADP97805.1| Holliday junction ATP-dependent DNA helicase RuvA [marine bacterium HP15] Length = 209 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + L++ G+ Y + P T L + GD TL +R+D L Sbjct: 1 MIGRIRGILVEKAPGQALVECAGLGYEVDIPYTTFFHLPETGDEVTLHTHFAVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S LDR F LL V GVG ++A+G+LS + A + + + ++S + ++PG+ K Sbjct: 61 YGFASSLDRDLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVENRDSASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQ 176 A R++ E+ + L V Q + A +AL+ LGY + Sbjct: 121 AERLLIEMADRIGQLEGQFVPTSPEATGVGQPGGQGPAGGPVATEEAEAALIALGYKPQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 A A+ V E+ ++ ++ +IRLALR Sbjct: 181 AAKAISKV--AEEGMSSET-LIRLALR 204 >gi|258514397|ref|YP_003190619.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans DSM 771] gi|257778102|gb|ACV61996.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans DSM 771] Length = 203 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + + V++DV GV Y I+ P S L G+ L +++D ++L Sbjct: 1 MIAFLRGKIVFIEANSVVLDVSGVGYRIFVPASCQSKLPAAGEEMLLLTYLSVKEDSLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F++L +V G+G + A+ VLS ++ +L ++ ++ K + ++PGI K Sbjct: 61 YGFIEQQERELFVMLLNVGGIGPKGALSVLSCLSPAQLYLAVAREDIKAVMKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L VQ + + + A +A+ AL LGY +A Sbjct: 121 AQRLILELKDK---LKGRVQPGEETTPE---TVSGSQNEAEDALFALEALGYSVSEAIVV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V VL+ S++++ AL+ + Sbjct: 175 VQEVLRSSSKNISASELLKNALQKLDA 201 >gi|255011116|ref|ZP_05283242.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis 3_1_12] gi|313148926|ref|ZP_07811119.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12] gi|313137693|gb|EFR55053.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12] Length = 201 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L +ID G+ Y + + T S + GK C L++ +R+D Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAIQGK--SSCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFVDKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQD-------MSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ +LK K + + + +N E A++AL LG+ Sbjct: 119 TAQRVIVDLKDKIKTGAMAATAVGGAAGALLPAMNAEVQE---------EAVAALTMLGF 169 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + V+++LK+E + A ++I+LAL+ Sbjct: 170 AAAPSQKVVLAILKEEPD-APVEKVIKLALK 199 >gi|238754860|ref|ZP_04616210.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri ATCC 29473] gi|238706871|gb|EEP99238.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri ATCC 29473] Length = 204 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G I VL++ GV Y I P+ L +IG +F + +R+D L Sbjct: 1 MIGRIRGIILEKQPPLVLLETNGVGYEIQLPMTCFYELPEIGQEAIIFTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + S + A + + + A A+SALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTSDIPLPTTSAQVSAADAEA-EAVSALVSLGYKPQEAS 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K D +IR ALR+ Sbjct: 180 RLVSKIAKPG---TDCETLIRDALRS 202 >gi|134294766|ref|YP_001118501.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4] gi|166230530|sp|A4JBL3|RUVA_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134137923|gb|ABO53666.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4] Length = 193 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 23/210 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A R++ ELKGK + + S PS A + ++ALV LGY + + Sbjct: 121 AERLLLELKGKLGADLGALAGAAS------------PSDHAADILNALVALGYSEKEGLA 168 Query: 180 AVVSVLKKEKNIADDSQI---IRLALRAIS 206 A+ KN+ + + I+LAL+A+S Sbjct: 169 AI-------KNVPAGTGVSDGIKLALKALS 191 >gi|307244215|ref|ZP_07526330.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis DSM 17678] gi|306492365|gb|EFM64403.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis DSM 17678] Length = 203 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG +E + DYVLI+ + Y + TLS L + GD ++ + +R+D I L Sbjct: 1 MIGYIKGTVEYIGIDYVLIENNEIGYKLNASSNTLSQLNE-GDRVKVYTKMIVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + + F LL SV +G ++ + +LS T ++L I ++K +++ PG+ K Sbjct: 60 CGFYSKEELEMFNLLTSVSKIGTKLGLAILSFATPSQLHLYISTSDTKTLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A R++ ELK + L S+ +D V K SMP+ + AI AL+ LGY ++ Sbjct: 120 AERMVLELKDRLGKL-SISGEDF--VGK---PTVSMPTTSDGEAIDALIALGYTGQESKV 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V + + D I++ AL I Sbjct: 174 AVDFVKQPGMGVED---IVKKALEYI 196 >gi|330828297|ref|YP_004391249.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas veronii B565] gi|328803433|gb|AEB48632.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas veronii B565] Length = 229 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + VL++V GV Y + P+ L +IG T+ +R+D L Sbjct: 26 VIGRLRGIVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS +TAT+ V S+ + + ++PG+ K Sbjct: 86 YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKT 145 Query: 121 ASRIMTELKGKAISLSSVVQQD-----MSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++ E+K + L V D M + + + + P A SALV LGY Sbjct: 146 AERLVVEMKDR---LKGWVSHDLFSPAMVTLPASEPELRA-PDVTEEAASALVALGYKPQ 201 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ V + K+ ++ D IIR +LR++ Sbjct: 202 QASQIVSKIAKEGMSVED---IIRESLRSL 228 >gi|213966124|ref|ZP_03394311.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum SK46] gi|213951222|gb|EEB62617.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum SK46] Length = 206 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 16/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G + L DY +I+ GV +++ R S L + F+ T M R+D I Sbjct: 1 MIASLRGEVIDLGADYCVIECGGVGHLVTITGRLASQLVR---HEQTFMLTTMAVREDAI 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF + +R+ F LL++V VG +VAM VLS ++ E+ ++ +N+K + G+ Sbjct: 58 TLFGFANSQEREMFALLRTVSTVGPKVAMSVLSVLSPAEIANAVASKNAKALQAANGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYG 173 ++A R++ ELK K V D + E+A + P + A + ALV LG+ Sbjct: 118 RLAERLLVELKDKV-----EVFADRAVSQPEEAASGAAPGIVLKADLDQVVGALVGLGFP 172 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + A A +V++ + + D ++ AL+ + Sbjct: 173 EADANEAAETVVRIDPTL-DTPMALKAALKTL 203 >gi|91776705|ref|YP_546461.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus KT] gi|123253965|sp|Q1GYR7|RUVA_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91710692|gb|ABE50620.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus KT] Length = 194 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 24/211 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+ID GV Y P+ T L G+ L + +R+D L Sbjct: 1 MIARLSGILVEKTPPQVVIDCHGVGYECEVPMSTFYNLPATGEKVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R F L V GVGA+ A+ +LS ++ +L +++ LQ + ++ ++PGI K Sbjct: 61 YGFGSDQERATFRQLLKVNGVGAKSALAILSGLSVDDLAQAVALQETGLLIKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178 A R++ ELK D ++ A S P S + + ++AL+ LGY + +A Sbjct: 121 AERLLLELK------------DKFAIDGGTALAGSNPAKSASSDVLNALLALGYNEREAL 168 Query: 179 TAVVSVLKKEKNIADD---SQIIRLALRAIS 206 AV K + D ++ I+L+L+++S Sbjct: 169 AAV-------KQLPADIAVAEGIKLSLKSLS 192 >gi|330996011|ref|ZP_08319905.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT 11841] gi|329574008|gb|EGG55586.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT 11841] Length = 200 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI +KG I L ++D GV Y + + T S L GK L+V +R+D Sbjct: 1 MIEYVKGQIAELTPATAVVDCHGVGYGLNISLNTFSALQGK--QEAKLYVYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F+LL SV G+G A +LS +T ELV I N K++ + GI +K Sbjct: 59 LYGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LK K ++SV + + A++AL LG+ + Sbjct: 119 TAQRIIVDLKDK---IASVEIEGTASPGTSATMATGHSEILEEAVAALTMLGFPPAPSQK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 +++LK+E A + ++I+LAL+ Sbjct: 176 VALAILKEEPEAAVE-RVIKLALK 198 >gi|323702066|ref|ZP_08113734.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans DSM 574] gi|323532948|gb|EGB22819.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans DSM 574] Length = 199 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +V++DV G+ Y +Y P ++ L G + +R+D I++ Sbjct: 1 MIAYIKGKLAYIGAGWVVVDVNGIGYRLYIP--AMTKLPSTGQEVQFYTHMAVREDGIQI 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + + F+ L V GVG +VA+ V++ + I N + ++PG+ K Sbjct: 59 YGFLQEEELECFLALLDVAGVGPKVALAVVAHLPPGVFKGIIASGNVNQLVKVPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM ELK K + + + + + I +A+ AL++LGY Q++A A Sbjct: 119 AQRIMLELKDK-LRGPAALPEPSETITPAPGRIED------DAVVALLSLGYAQNEAREA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + D S +I+ AL+ ++ Sbjct: 172 VRQAMGLGLT-GDVSALIKAALKELA 196 >gi|289422389|ref|ZP_06424235.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius 653-L] gi|289157224|gb|EFD05843.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius 653-L] Length = 207 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 8/184 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG I+ + DY+LI+ G+ Y + TLS L IG ++ + +R+D I L Sbjct: 1 MIGYIKGIIDEIGIDYILIENNGIGYKLLVSTTTLSQLS-IGQEAKIYTKMIVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + + F LL SV VG +V MG+LS + II + +++ PG+ K Sbjct: 60 CGFYSKEEEEMFKLLTSVSKVGTKVGMGILSFAPPARIQSIIINSDVTAMSKAPGVGKKT 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ ELK GK + +++ KE A + + AISAL+ LGY +A Sbjct: 120 AERIILELKDKVGKIVIDGLDTMENLPLSGKEIA----IDNSEDEAISALIALGYTSSEA 175 Query: 178 TTAV 181 +V Sbjct: 176 QESV 179 >gi|170699606|ref|ZP_02890645.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria IOP40-10] gi|171319639|ref|ZP_02908733.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5] gi|172059669|ref|YP_001807321.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6] gi|229560008|sp|B1YTE0|RUVA_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170135488|gb|EDT03777.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria IOP40-10] gi|171095130|gb|EDT40136.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5] gi|171992186|gb|ACB63105.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6] Length = 193 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++ALV LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASQSDHATDILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|85059239|ref|YP_454941.1| Holliday junction DNA helicase motor protein [Sodalis glossinidius str. 'morsitans'] gi|123752615|sp|Q2NTI9|RUVA_SODGM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84779759|dbj|BAE74536.1| holliday junction DNA helicase RuvA [Sodalis glossinidius str. 'morsitans'] Length = 205 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLLETHGVGYEVFMPMTCFYALPETGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R F L V GVG ++A+ +LS ++A + + ++ Q + ++PG+ K Sbjct: 61 FGFIHKQERVLFRELIKVNGVGPKLALAILSGMSAQQFISAVERQEINALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQA 177 A R++ E+K + LS V Q + +MP+ A++ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLSGDLFVPQGAGEIPA-AIDAPAMPADPEGEAVAALVALGYKPQEA 179 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V V +D +IR ALRA Sbjct: 180 SRMVSKVASAG---SDCEMLIRDALRA 203 >gi|88861319|ref|ZP_01135950.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas tunicata D2] gi|88816698|gb|EAR26522.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas tunicata D2] Length = 205 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 13/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y ++ P+ L K G+ TL+ +R+D L Sbjct: 1 MIGRLSGILIEKQPPQILLDVAGVGYEVHLPMTCFYHLPKEGEKTTLYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L GVG ++ + +LS ++A + V+ + +++ + ++PG+ K Sbjct: 61 FGFNHKAERALFRELLKANGVGPKLGLAILSGMSADQFVQCVQHEDATSLVKLPGVGKKT 120 Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E+K G+ + S + + N H S +AI+ALV LGY Q Sbjct: 121 AERLVLEMKDRLKDWGRDLFNPSSNELVLEMQNGPNVH----DSAEDDAIAALVALGYKQ 176 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA V S+ K +IR AL+++ Sbjct: 177 AQAEKTVKSLRAPGKT---SEVLIREALKSM 204 >gi|116620084|ref|YP_822240.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus Ellin6076] gi|122255537|sp|Q02AG7|RUVA_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116223246|gb|ABJ81955.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus Ellin6076] Length = 197 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 8/181 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + VL++ GV Y + P+ T + L +G L + TH+R+D + L Sbjct: 1 MIALLRGLVVEKHPNQVLVETGGVGYDVTIPVSTFTKLPDLGGEVRLRIYTHVREDVLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L SV G+G +A+ +LS + A +L+ SI + + ++PG+ K Sbjct: 61 YGFLTQDEKALFEKLISVSGIGPTLAVKILSGLAAADLILSIRRGEVEKLVKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L + ++ E ++ + +SAL+NLG + QA A Sbjct: 121 AERMVLELRDK---LPAATGEEPGAPAAE-----ALSPIDQDVLSALLNLGCARPQAEAA 172 Query: 181 V 181 V Sbjct: 173 V 173 >gi|227504981|ref|ZP_03935030.1| Holliday junction DNA helicase motor protein [Corynebacterium striatum ATCC 6940] gi|227198431|gb|EEI78479.1| Holliday junction DNA helicase motor protein [Corynebacterium striatum ATCC 6940] Length = 194 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 7/188 (3%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 D+ +I+ GV Y TL L + GD T+ +++D + L+GF +D DR F + Sbjct: 7 DHAVIECAGVGYKFLATPVTLGTL-RRGDEATVLTSMVVKEDSMTLYGFSNDEDRDMFHV 65 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 LQ+V G+G ++A+ LS + ++L ++I ++K + IPG+ ++A R+ EL+ K + Sbjct: 66 LQTVSGLGPKLALAALSVMGPSQLAQAISSGDAKTLQTIPGVGKRMAERLALELRDKVSA 125 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 + Q +E + + + ALV LG+ D+A VV + E++ A+ Sbjct: 126 FAPQAQP-----GQEASAAVAHGPVVDQVVEALVGLGF-TDKAARPVVEGIVAEESAAET 179 Query: 195 SQIIRLAL 202 + ++R AL Sbjct: 180 AVVLRGAL 187 >gi|254424412|ref|ZP_05038130.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335] gi|196191901|gb|EDX86865.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335] Length = 207 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 23/206 (11%) Query: 1 MIGKIKG---NIEGLYEDYVLIDVQ--GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG +KG + + L V+ V+ GV Y + RTLS L ++G+ +F R+ Sbjct: 1 MIGYVKGILADSQKLPNGRVIATVEAGGVGYDMQVNPRTLSQLPQVGEPVRIFTHLQSRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D LFGF S +R F LL SV G+G+++ M +L+ + EL++S++ N++V+ + PG Sbjct: 61 DLQMLFGFSSKAERDVFRLLISVSGIGSQMGMSLLNALGLNELIQSVVNGNARVLTRTPG 120 Query: 116 ISMKIASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 + K A RI+ ELK K S S +V ++ Q + M LV LGY Sbjct: 121 VGNKTAERIILELKTKLSEWRSHSGIVAPTGGPISAVQEDVEMM----------LVALGY 170 Query: 173 GQDQATTAVVSV-----LKKEKNIAD 193 + + A+V+V L K ++ D Sbjct: 171 SNSEISKALVAVGNGTALSKSDDVED 196 >gi|88705605|ref|ZP_01103315.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71] gi|88700118|gb|EAQ97227.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71] Length = 195 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 8/189 (4%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 +L+DV GV Y + P+ TL L +G+ TL +R+D L+GF+S DR+ F L Sbjct: 9 ILVDVGGVGYELQVPMTTLFQLPALGEVVTLLTHHAVREDAQTLYGFVSARDRELFRHLI 68 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 V GVG ++A+ +LS + ++ + + +PG+ K A R++ E++ + +S Sbjct: 69 KVNGVGPKLALTILSGMDGERFARAVHDDDLSALVALPGVGKKTAERLLIEMRDR---VS 125 Query: 137 SVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 ++ N QA S +A ALV LGY +A V V +I+D Sbjct: 126 GWLEPGPGESANLGQAGPSS--DKLGDAEGALVALGYKPAEAARLVARV--DNDDISDSE 181 Query: 196 QIIRLALRA 204 ++IRLALR+ Sbjct: 182 ELIRLALRS 190 >gi|262375568|ref|ZP_06068801.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145] gi|262309822|gb|EEY90952.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145] Length = 200 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 9/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D L Sbjct: 1 MIGCLIGEVLALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ ++ F L V GVG ++A+G+LS ++ L+ ++ ++ + ++PG+ K Sbjct: 60 YGFINAQEKTIFRTLLKVNGVGPKMALGILSTLSVEMLIHTVEHEDINTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A R+M EL+ + +++S + N I M + A+ A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKAMAS----GAAPSNSTAPQIQFMGNSAVAEAEAALQSLGYKPVEAQK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 +V+ K E + S IIR AL++++ Sbjct: 176 -LVNAAKGE--FTEASDIIRAALKSMN 199 >gi|227111608|ref|ZP_03825264.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 205 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + A + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPAAADSRVSDPETEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + + AD +IR ALRA Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203 >gi|220916123|ref|YP_002491427.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans 2CP-1] gi|254766937|sp|B8JF04|RUVA_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219953977|gb|ACL64361.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans 2CP-1] Length = 197 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +D+ ++DV GV Y+++ +L+ L G+ L V TH+R+D + L Sbjct: 1 MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F L V+GVG R A +LS I A EL +++ + + ++ GI K Sbjct: 61 YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++L+ + + +AL+NLGY QA Sbjct: 121 AERLVLELKEKLVALARAAGPARAGAEADVLEQLR---------TALLNLGYRPPQA-EG 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L+ +++R AL+ Sbjct: 171 VAEALRDSAEGRPLDELLREALK 193 >gi|238026246|ref|YP_002910477.1| Holliday junction DNA helicase RuvA [Burkholderia glumae BGR1] gi|237875440|gb|ACR27773.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia glumae BGR1] Length = 193 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPPTGERVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL + + +Q++ + ++PGI K Sbjct: 61 YGFLTPQERSAFRELLKITGIGARMALAVLSGMSVQELSQVVTIQDAARLQRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ E A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLG----ELAGQASQSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+L+L+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLSLKALS 191 >gi|115350636|ref|YP_772475.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD] gi|122324004|sp|Q0BI82|RUVA_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115280624|gb|ABI86141.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD] Length = 193 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++ALV LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASQSDHAADILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|300717084|ref|YP_003741887.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae Eb661] gi|299062920|emb|CAX60040.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae Eb661] Length = 205 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 107/210 (50%), Gaps = 13/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++ LF +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEANGVGYEVHMPMTCFYELPELNQEAILFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAIN-----AISALVNLGYGQ 174 A R++ E+K + + D+ + A + P+ A N A++ALV+LGY Sbjct: 121 AERLVVEMKDRFKGMHG----DLFAADAPFALTSEVQPADAANDAEGEAVAALVSLGYKP 176 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ + + + + AD +IR ALRA Sbjct: 177 QEASRMISKLGRPD---ADCETLIREALRA 203 >gi|237748980|ref|ZP_04579460.1| RuvA protein [Oxalobacter formigenes OXCC13] gi|229380342|gb|EEO30433.1| RuvA protein [Oxalobacter formigenes OXCC13] Length = 193 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 27/212 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+D QGV Y I P+ T L +G+ TLF +R+D L Sbjct: 1 MIGRIQGILLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGEKVTLFTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVGAR A+ +LS ++ ++ +++ LQ++ + IPGI K Sbjct: 61 YGFGSLDERALFRQLIRISGVGARTALALLSGLSVNDMSQAVALQDASRLTSIPGIGKKT 120 Query: 121 ASRIMT-----ELKGKAISLSSVVQQD-MSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ G ++SS VQ D M+ + +AL+ LGY + Sbjct: 121 AERLLLELKGKLETGALSAISSSVQNDAMADIQ-----------------NALLALGYSE 163 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+ K+ N S I++AL+A+S Sbjct: 164 KETILAI----KQVPNDCSVSDGIKMALKALS 191 >gi|329118736|ref|ZP_08247436.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria bacilliformis ATCC BAA-1200] gi|327465171|gb|EGF11456.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria bacilliformis ATCC BAA-1200] Length = 193 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 32/212 (15%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + ++IDV G+ Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGTLAEKHPPQIVIDVNGIGYEAEVSMQTFCALPPVGETVRLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS + EL +++ ++ K ++ PGI K Sbjct: 61 FGFADAEERAAFRQLVKVGGIGAKTALGILSAMNTAELAQAVAQEDVKRLSAAPGIGKKT 120 Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ EL+GK + L++ QQD + + L+ LGY + Sbjct: 121 AERMILELRGKLAPANVSGGLAAPAQQDGGE----------------DIVQTLLALGYSE 164 Query: 175 DQATTAVVSVLKKEKNIADDSQI---IRLALR 203 +A A K I +++ +RLAL+ Sbjct: 165 REARAAA-------KGIPPGTEVGEGVRLALK 189 >gi|296454195|ref|YP_003661338.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JDM301] gi|312132689|ref|YP_004000028.1| ruva [Bifidobacterium longum subsp. longum BBMN68] gi|317483238|ref|ZP_07942233.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp. 12_1_47BFAA] gi|322689208|ref|YP_004208942.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis 157F] gi|322691274|ref|YP_004220844.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JCM 1217] gi|291516874|emb|CBK70490.1| Holliday junction DNA helicase subunit RuvA [Bifidobacterium longum subsp. longum F8] gi|296183626|gb|ADH00508.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JDM301] gi|311773647|gb|ADQ03135.1| RuvA [Bifidobacterium longum subsp. longum BBMN68] gi|316915307|gb|EFV36734.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp. 12_1_47BFAA] gi|320456130|dbj|BAJ66752.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JCM 1217] gi|320460544|dbj|BAJ71164.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis 157F] Length = 208 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 106/210 (50%), Gaps = 17/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y + LS L G +F ++ QD I L Sbjct: 1 MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRL-HAGQDTRVFTYMNLSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL ++ F+ L V G+G +VA +LS +T ++L +I ++ +A+ PG+ K Sbjct: 60 HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178 A +I+ ELKG +I LS + + S QA I P + + L++LG+ Q A Sbjct: 120 AQKIILELKG-SIDLSQI--EGASA----QAAISKSPVDTGTEQVVEGLISLGWRQQDAQ 172 Query: 179 TAVVSVLKKEKNIA-----DD-SQIIRLAL 202 AV E +I DD +++RLAL Sbjct: 173 QAVAEAC-AENDIPTPLATDDVPRVLRLAL 201 >gi|269122262|ref|YP_003310439.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC 33386] gi|268616140|gb|ACZ10508.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC 33386] Length = 205 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 81/131 (61%), Gaps = 3/131 (2%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 DYV ++V G+ Y I+ ++T L + D LF+ T++++D L+GF ++ +R+ F Sbjct: 15 DYVALEVNGIAYKIFISLKTYDMLTE--DTEKLFIYTNVKEDDFSLYGFKTESERELFKA 72 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L S+ GVG ++ + +LS E+++ +I +N+K++ ++PG+ K A +++ +LK K Sbjct: 73 LVSISGVGPKLGLAILSTFNTQEVIDIVIEENAKLLVRVPGLGQKKAQKLIVDLKDKVKK 132 Query: 135 LSSV-VQQDMS 144 L+ + + QD S Sbjct: 133 LNVIGIAQDGS 143 >gi|323496589|ref|ZP_08101642.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326] gi|323318335|gb|EGA71293.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326] Length = 205 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 110/210 (52%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAISALVNLGYGQD 175 A R++ E+K + S+ D+ + A + S P S A+SAL++LGY Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPVDSAPEVVQSSAEEEAVSALLSLGYKPT 177 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ V +L+ + ++IR AL+++ Sbjct: 178 QASKVVSQILQPGMS---SEELIREALKSM 204 >gi|311031507|ref|ZP_07709597.1| Holliday junction DNA helicase RuvA [Bacillus sp. m3-13] Length = 203 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 4/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E + +YV+++V GV Y + P + + + + T++ H+R+D + L Sbjct: 1 MIDFIRGFVEYVSPEYVVVEVMGVGYQVNAPNPFIYQVDRDKE-VTIYTYQHVREDILAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D+ FM L +V G+G + A+ +L+ ++V +I ++ K + + PG+ K Sbjct: 60 YGFKTREDKNLFMKLLNVTGIGPKGALAILASGQPAQVVHAIENEDEKFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L D+ + E + + S A+ AL LGYG+ + Sbjct: 120 ARQIILDLKGKLNDLVPSAFPDLFQPDVEVSVPGASSSALEEALEALKVLGYGE-REIKK 178 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 +V L+KE D Q ++ AL+ Sbjct: 179 IVPALQKEDLSTD--QYVKRALQ 199 >gi|154487345|ref|ZP_02028752.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis L2-32] gi|154083863|gb|EDN82908.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis L2-32] Length = 205 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G++E + +I+V GV Y + P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASM-HAGQEIKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG +I LS + + E + A + L++LG+ Q A A Sbjct: 120 AQKIILELKG-SIDLSQIEGSSATASTPED-------TGAEQVVEGLMSLGWHQQDAAHA 171 Query: 181 VVSV-----LKKEKNIADDSQIIRLALRAI 205 V +V ++ N D ++++LAL ++ Sbjct: 172 VQTVCADNQIETPLNAEDVPRVLKLALTSL 201 >gi|269138790|ref|YP_003295491.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella tarda EIB202] gi|267984451|gb|ACY84280.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella tarda EIB202] gi|304558782|gb|ADM41446.1| Holliday junction DNA helicase RuvA [Edwardsiella tarda FL6-60] Length = 202 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I V+++ GV Y + P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGTILEKQPPQVVLETHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K + LS D+ + QA + A++AL+ LGY +A Sbjct: 121 AERLVVEMKDRFKGLSGDLFTPTDDLPPSTQPQAQADA----EGEAVAALIALGYKPQEA 176 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V V AD +IR ALRA Sbjct: 177 SRLVNRVTVAG---ADSETLIRDALRA 200 >gi|254374431|ref|ZP_04989913.1| holliday junction DNA helicase RuvA [Francisella novicida GA99-3548] gi|151572151|gb|EDN37805.1| holliday junction DNA helicase RuvA [Francisella novicida GA99-3548] Length = 216 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGALIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-------NKEQAHICSMPSFAI--NAISALVNLG 171 A R++ E+ K + +++ + S +QA ++ + +I ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + A ++IR AL+ Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209 >gi|295695626|ref|YP_003588864.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912] gi|295411228|gb|ADG05720.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912] Length = 198 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 112/203 (55%), Gaps = 12/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I G+ D+V++DVQGV Y +Y +L+ G L + R+D L Sbjct: 1 MIAFLRGKIAGVNPDHVVMDVQGVGYKVYV-APSLAATLHPGQEAVLHTQLVWREDGPTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R +F+L+Q+V G+G +VA+GV++ + +++ ++ + + G+ K Sbjct: 60 YGFADPRERDFFVLVQTVPGIGPKVALGVVA-AGIDRVSRAVVEEDMAFLRGLSGVGRKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ + LS +V D + +E + + M + ++AL LGY ++ + Sbjct: 119 ADRLVVDLRDR---LSGLV-PDAAGPEREGSGVRPME----DVVAALSALGY-NEREIQS 169 Query: 181 VVSVLKKE-KNIADDSQIIRLAL 202 ++ VL++E K + ++IRLAL Sbjct: 170 IMPVLRREWKEGREPEEMIRLAL 192 >gi|257063440|ref|YP_003143112.1| Holliday junction DNA helicase, RuvA subunit [Slackia heliotrinireducens DSM 20476] gi|256791093|gb|ACV21763.1| Holliday junction DNA helicase, RuvA subunit [Slackia heliotrinireducens DSM 20476] Length = 197 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + G D I+V GV + + P L+ L + G+ + +R+D + L Sbjct: 1 MIAFLNGRVAGHTTDTAFIEVNGVGFAVGMPASDLAKLPERGEEVLVHTYLAVREDAMAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++++F L V GVG +VA+ LS EL +I + K ++ IPG+ K Sbjct: 61 YGFLTQDEKRFFEKLIGVSGVGPKVALAALSVYKPEELANAIAAGDVKAVSMIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKG S ++M S ++E A A AL+++G+ +A Sbjct: 121 AQRMILELKG------SFSDENMQSLFDQETAEATRRLE---GAREALLSMGFSSAEADL 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 A+ + + DS +I+ ALR + Sbjct: 172 ALKDA---PEELHTDSALIQYALRRLGS 196 >gi|119025822|ref|YP_909667.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium adolescentis ATCC 15703] gi|166230520|sp|A1A1K2|RUVA_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118765406|dbj|BAF39585.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium adolescentis ATCC 15703] Length = 205 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G++E + +I+V GV Y + P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASM-HAGQEIKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG +I LS + + E + A + L++LG+ Q A A Sbjct: 120 AQKIILELKG-SIDLSQIEGSSATASTPED-------TGAEQVVEGLMSLGWHQQDAAHA 171 Query: 181 VVSV-----LKKEKNIADDSQIIRLALRAI 205 V +V ++ N D ++++LAL ++ Sbjct: 172 VQTVCADNQIETPLNAKDVPRVLKLALTSL 201 >gi|295677647|ref|YP_003606171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002] gi|295437490|gb|ADG16660.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002] Length = 193 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERIVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLGAM----AGATSPSDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|253578705|ref|ZP_04855976.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39B_FAA] gi|251849648|gb|EES77607.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39BFAA] Length = 202 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 96/189 (50%), Gaps = 11/189 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + E V+++ G+ Y IY LS + ++G+ + +R+D ++L Sbjct: 1 MIAFVHGMAVDMTESSVVVEAGGIGYEIYMTGADLSEI-RMGEDVKVHTYFSVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D Q F LL V GVG + A+GVL+ ITA EL +I+ + K +++ PGI K Sbjct: 60 YGFRAKDDLQMFKLLLGVNGVGPKAALGVLAGITADELRFAILSDDVKTLSKAPGIGKKT 119 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A +++ ELK K A L V +Q+ + V + A+ ALV LGY Sbjct: 120 AQKLILELKDKMKLEDAFELKLVHEQERAAVGAGEVSDGRQ-----EAVEALVALGYSSA 174 Query: 176 QATTAVVSV 184 A AV V Sbjct: 175 DALRAVRKV 183 >gi|261340247|ref|ZP_05968105.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC 35316] gi|288317332|gb|EFC56270.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC 35316] Length = 203 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + S A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPSSDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V K + A +IR ALRA Sbjct: 181 VSKVAKPD---AGSETLIREALRA 201 >gi|261252501|ref|ZP_05945074.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891] gi|260935892|gb|EEX91881.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891] Length = 205 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 15/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNLGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAISALVNLGYGQD 175 A R++ E+K + S+ D+ + A S+P S A+SAL+ LGY Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPADSVPQATQESAEEEAVSALLALGYKPT 177 Query: 176 QATTAVVSVLKKEKNIADDS--QIIRLALRAI 205 QA+ VVS +KK AD S Q+IR AL+++ Sbjct: 178 QASK-VVSQVKK----ADMSSEQLIREALKSM 204 >gi|224456850|ref|ZP_03665323.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis MA00-2987] gi|254370278|ref|ZP_04986283.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|254874591|ref|ZP_05247301.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|90135024|sp|Q5NH17|RUVA_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151568521|gb|EDN34175.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|254840590|gb|EET19026.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158951|gb|ADA78342.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. tularensis NE061598] Length = 216 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + +A ++IR AL+ Sbjct: 181 YKQKDAEKMARSAMGDATTVA---EVIRKALQ 209 >gi|326335182|ref|ZP_08201379.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692712|gb|EGD34654.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 196 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G++ YV+ID G+ Y + + T S L + L+ +++D L Sbjct: 1 MITQLQGHLVEKTPTYVIIDCNGIGYWVNISLNTFSQLSD-SEQIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV GVGA A +LS ++ +L +I+ + + I + GI K Sbjct: 60 FGFFEKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNNDVRTIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ K + LSS + +++ +Q H + A+SAL LGY Q A Sbjct: 120 AQRIILDLREKMLKLSS--EGNIAPTVSQQQH------YKEEALSALEVLGYPQKIAENV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L ++I+ AL+ + Sbjct: 172 VNKILSHATGEVSVEELIKQALKQL 196 >gi|189462206|ref|ZP_03010991.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136] gi|189431109|gb|EDV00094.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136] Length = 198 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 9/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG + + +I+ G+ Y I + T S + GK L++ +R+D Sbjct: 1 MIEYIKGELTEITPAMAVIECNGLGYGINVSLNTYSAIQGK--KEVKLYIYESIREDAYI 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F+LL SV G+G A +LS +T +EL I N K++ + GI +K Sbjct: 59 LYGFATKQERELFLLLISVSGIGGNTARMILSALTPSELCNVISSGNDKLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LK K IS + + S I + AI+AL LG+ Q + Sbjct: 119 TAQRIIVDLKDK-ISTTDIGTSTTSA----PISITANNEIYEEAIAALTMLGFAQAPSQK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V ++LK+E + A + ++I+LAL+ Sbjct: 174 VVAAILKEEPDAAVE-KVIKLALK 196 >gi|307730947|ref|YP_003908171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003] gi|307585482|gb|ADN58880.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003] Length = 193 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLGAM----AGAVSASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQI---IRLALRAIS 206 + KN+ + + I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSDGIKLALKALS 191 >gi|171060623|ref|YP_001792972.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6] gi|229560097|sp|B1Y8E1|RUVA_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170778068|gb|ACB36207.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6] Length = 191 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ T L +G+ TL +R+D L Sbjct: 1 MIGRLTGTLAEKSPPQLLVDVGGVGYEVDVPMSTFYNLPVLGERVTLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR A+ +LS ++ +L +++ Q + + ++PGI K Sbjct: 61 YGFLTATERATFRQLLKISGVGARTALSILSGLSVADLAQAVSAQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKA---ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELKGK ++L V + N+ Q+ I + AL+ LGY + +A Sbjct: 121 AERLLLELKGKLGPDLALPGAVIR-----NEAQSDI----------VQALIALGYNEREA 165 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 A + L + ++D I+LALRA+ Sbjct: 166 AAA-IKPLPADVGVSDG---IKLALRAL 189 >gi|227503511|ref|ZP_03933560.1| Holliday junction DNA helicase motor protein [Corynebacterium accolens ATCC 49725] gi|227076014|gb|EEI13977.1| Holliday junction DNA helicase motor protein [Corynebacterium accolens ATCC 49725] Length = 202 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y +TL L + G+ + +++D + L Sbjct: 1 MIAALRGEVLHIGLDHGVIECGGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179 A R+ ELK K + D + +A P +++++ AL+ LG+ ++A Sbjct: 120 AQRLTLELKDKVKRFAGTPVPDAA----PEATGAGGP--VVDSVTEALLGLGF-TEKAAR 172 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 VV E AD S ++R AL Sbjct: 173 PVVEAAYAEAPAADTSTLLRAAL 195 >gi|56707779|ref|YP_169675.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis SCHU S4] gi|110670250|ref|YP_666807.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis FSC198] gi|56604271|emb|CAG45291.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320583|emb|CAL08674.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. tularensis FSC198] Length = 217 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 2 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 62 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 122 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 181 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + +A ++IR AL+ Sbjct: 182 YKQKDAEKMARSAMGDATTVA---EVIRKALQ 210 >gi|332883220|gb|EGK03503.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas mossii DSM 22836] Length = 193 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 12/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I L ++ G+ Y I + T + + L++ +R+D +L Sbjct: 1 MIDYIKGDIAELTPTSATLETHGIGYFINISLNTYTSISG-QKSAKLYIYEAIREDAYQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+GA +LS +T EL I NS ++ + GI K Sbjct: 60 YGFSEKQERELFILLISVSGIGASTGRMILSSMTVQELTNVIASGNSDILKTVKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K I +S + +M + AI+ALV LG+ Q QA+ Sbjct: 120 AQRVIVDLKDK-IKVSGIESVEMFAKTSQAGE---------EAIAALVMLGFPQ-QASQK 168 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 VS + K+K + Q+I+ AL+ Sbjct: 169 AVSKILKDKPDSTVEQVIKTALK 191 >gi|325290232|ref|YP_004266413.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus glycolicus DSM 8271] gi|324965633|gb|ADY56412.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus glycolicus DSM 8271] Length = 200 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +D +++DV GV Y++ P LS + +IG L +R+D + L Sbjct: 1 MIALLRGTVWEMDKDKLIVDVNGVGYLLNVPSGKLSSV-RIGQEVVLHTYLLVREDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D++ F+ L SV G+G + A+ +LS ++ +++ +++ +N + +I GI KI Sbjct: 60 FGFADRQDKELFIKLLSVSGIGPKAALSILSSFSSVQIITALVQENHVMFTEISGIGSKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-AHICSMPSFAINAISALVNLGYGQDQATT 179 A R+ ELK K + + E A S P + AL+ LG+ + T Sbjct: 120 ARRLTLELKEK------FKDYHLEGLTGETFAGSESGPGSEPGIMEALLALGFTPGETRT 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV +V K E ++ +R ALR ++ Sbjct: 174 AVNAVGKLEGLTFEEQ--LREALRLLA 198 >gi|309800933|ref|ZP_07695065.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium JCVIHMP022] gi|308222469|gb|EFO78749.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium JCVIHMP022] Length = 185 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 13/188 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + LI+V GV Y I P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASM-HAGQEVKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178 A +I+ ELKG +I LS + + A + S P + + + L++LG+ Q A Sbjct: 120 AQKIILELKG-SIDLSQI---------ETAASVISRPEDTGSEQVVEGLISLGWRQQDAL 169 Query: 179 TAVVSVLK 186 AV V + Sbjct: 170 HAVQEVWQ 177 >gi|323527310|ref|YP_004229463.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001] gi|323384312|gb|ADX56403.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001] Length = 193 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLGVM----AGAVSASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|206561676|ref|YP_002232441.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia J2315] gi|229560010|sp|B4EES6|RUVA_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|198037718|emb|CAR53661.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315] Length = 193 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 23/210 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTQQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A R++ ELKGK + + S PS A + ++AL+ LGY + + Sbjct: 121 AERLLLELKGKLGADLGALAGAAS------------PSDHATDILNALLALGYSEKEGLA 168 Query: 180 AVVSVLKKEKNIADD---SQIIRLALRAIS 206 A+ KN+ S+ I+LAL+A+S Sbjct: 169 AI-------KNVPAGTGVSEGIKLALKALS 191 >gi|258405866|ref|YP_003198608.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM 5692] gi|257798093|gb|ACV69030.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM 5692] Length = 204 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG +KG++ + +D+ L+ GV Y + TL L + G LFV T +R+D + Sbjct: 1 MIGYLKGDVLRIRKDHCLLATAGGVGYDVQATAGTLGRL-EQGSEAELFVHTVVREDALE 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L V +G + ++ +LS T EL +++ + ++ GI K Sbjct: 60 LYGFASLAERDVFAELLGVSKLGPKTSLAILSTFTPEELARIAQTEDTAALTRVSGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RIM ELK K + + + QA S S +A+S L LGY +++ Sbjct: 120 SAKRIMWELKDKLTAW-----EGEAVPGTPQATPASGGSVFGDALSGLCGLGYSEEEVRP 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + +L++E ++ D +IIR L+ ++ Sbjct: 175 VLSEILEQEPDL-DVGEIIRACLKRLA 200 >gi|298479676|ref|ZP_06997876.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22] gi|298274066|gb|EFI15627.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22] Length = 200 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIHEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176 A R++ +LK K ++S +S + P+ A A+SAL LG+ Sbjct: 119 TAQRVIVDLKDKIKTMSGSAGGGVSAG------LLLQPANAEVQEEAVSALTMLGFAAAP 172 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 + V+++LK+E + A ++I+LAL+ Sbjct: 173 SQKVVLAILKEEPD-APVEKVIKLALK 198 >gi|197121426|ref|YP_002133377.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K] gi|229470528|sp|B4UFY0|RUVA_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|196171275|gb|ACG72248.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K] Length = 197 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 75/131 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +D+ ++DV GV Y+++ +L+ L G+ L V TH+R+D + L Sbjct: 1 MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F L V+GVG R A +LS I A EL +++ + + ++ GI K Sbjct: 61 YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120 Query: 121 ASRIMTELKGK 131 A R++ ELK K Sbjct: 121 AERLVLELKEK 131 >gi|300781059|ref|ZP_07090913.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium genitalium ATCC 33030] gi|300532766|gb|EFK53827.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium genitalium ATCC 33030] Length = 207 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+ GV Y P TL+ L + G+ + +R+D + L Sbjct: 1 MIDSLNGEVISIGLDHAVIECAGVGYRFLAPPPTLARLVR-GETTRVLTTLVVREDDMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D R F L +V G+G ++A+ LS T EL I ++K I IPG+ K+ Sbjct: 60 YGFTDDDARSMFHRLTAVSGLGPKLAIAALSVFTPGELAAHITSGDAKTIQSIPGVGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A R++ ELK K L Q + + S SFA + ALV LG+ +++ Sbjct: 120 ADRMVLELKDKLQGLYPGAAQSEAPEAAGEVPPISGSSFATEQVVEALVGLGF-PEKSAR 178 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 A V + E + A+ S ++R AL Sbjct: 179 AAVDAVAAENDGAESSVLLRAAL 201 >gi|120612876|ref|YP_972554.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1] gi|166229622|sp|A1TUZ2|RUVA_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120591340|gb|ABM34780.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1] Length = 190 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G+ L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E L + N QA I + AL+ LGY D+ TA Sbjct: 121 AERLLLE---LKGKLGVDIGARPEAANDAQADI----------LQALLALGY-NDKEGTA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L K+ + S+ I+LAL+A++ Sbjct: 167 ALKALPKDVGV---SEGIKLALKALA 189 >gi|119961641|ref|YP_948037.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1] gi|119948500|gb|ABM07411.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1] Length = 231 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 24/212 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +I ++G + + +ID+ G +Y +TLS L K G LF +R+D + L Sbjct: 18 LISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSHL-KTGSEAKLFTSMIVREDSLTL 76 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R+ F +L SV GVG R+A+ VL+ + + +SK ++PGI K+ Sbjct: 77 FGFADDDEREVFDVLLSVSGVGPRLALAVLAVHEPEAIRVAAHTGDSKTFTKVPGIGPKV 136 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA------ISALVNLGYGQ 174 A RI+ EL GK +V S + P+ A NA ++A+ +LG+ + Sbjct: 137 AGRIVLELAGK------LVPHGTST--------GTAPAAAPNAEWKPQVVAAMTSLGWSE 182 Query: 175 DQATTAVVSVLKKEKNIADD---SQIIRLALR 203 A ++ + + D +QI+R LR Sbjct: 183 KDANGSIDKAMADSPELVDAGNVAQILRATLR 214 >gi|110833613|ref|YP_692472.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2] gi|110646724|emb|CAL16200.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 21/213 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y + P+ L + G TL +R+D L Sbjct: 2 MIGQLRGTLLEKRPPVLLLDVNGVGYEVEAPMTVFYDLPEAGAELTLHTHFVVREDAQLL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L V GVG ++A+ +LS I A L I Q++ + ++PGI K Sbjct: 62 YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 121 Query: 121 ASRIMTELK-------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ E++ G +S+ V D + +AI+AL LGY Sbjct: 122 AERLVIEMRDRLDKIDGGPVSVPGRVDTDQPDDARS------------DAIAALEALGYR 169 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A AV +E ++ Q+IR AL++++ Sbjct: 170 NKDAAVAVGKAADQEGMSSE--QLIRKALKSLA 200 >gi|114321641|ref|YP_743324.1| Holliday junction DNA helicase RuvA [Alkalilimnicola ehrlichii MLHE-1] gi|122310889|sp|Q0A5Q3|RUVA_ALHEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114228035|gb|ABI57834.1| Holliday junction DNA helicase subunit RuvA [Alkalilimnicola ehrlichii MLHE-1] Length = 208 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +L+DV GV Y + P+ T L TL+ +R D L Sbjct: 1 MIGRLHGTVAERHPPALLLDVGGVGYELEAPMSTFYALPAGDQAVTLWTHLAVRDDGQAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F +L + GVG ++A+ +LS + A L I ++ + ++PG+ K Sbjct: 61 YGFASRAERDLFRVLIRISGVGPKLALALLSGMNAEGLQRCIEREDVATLTRLPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAI-NAISALVNLGYGQDQA 177 A R++ EL+ + L + + EQ + P + +A+SALV LGY +A Sbjct: 121 AQRLIVELRDRLDGLLPAASGGVPARTGSGEQLDAPAGPQGSREDAVSALVALGYKPAEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 V +V N ++IR AL+A Sbjct: 181 GRLVNAV--PGANDLPSEELIRRALQA 205 >gi|256819155|ref|YP_003140434.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM 7271] gi|256580738|gb|ACU91873.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM 7271] Length = 194 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +V+ID GV Y + + T S L + G+ L+ +++D L Sbjct: 1 MITQLQGKLVEKNSTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA ++ +II + I + GI K Sbjct: 60 YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGDVATIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L + M+ V+ + A++AL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVPMNAVSTHKE----------EALAALEVLGFMRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++K +II+ AL+ Sbjct: 170 VDIIIKSSSEELSVEEIIKQALK 192 >gi|213692039|ref|YP_002322625.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254766945|sp|B7GR17|RUVA_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|213523500|gb|ACJ52247.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458151|dbj|BAJ68772.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 208 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y P L L D C +F ++ QD + L Sbjct: 1 MIGMLTGRVESVETDTALIDVGGVGYETRMPATDLGRLHAGQDAC-VFTYLNLSQDSVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL ++ F+ L V G+G +VA +L +T ++L +I ++ +A+ PG+ K Sbjct: 60 YGFLDRDSKRVFLQLIKVSGIGPKVAQSLLGTMTPSQLARAIADNDAAALAKAPGLGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG ++ L+ D S N + ++ + + LV+LG+ Q A A Sbjct: 120 AQKIILELKG-SVDLNQ--SDDASAGNAP--YQPTVDAGVEQVVEGLVSLGWRQQDAQRA 174 Query: 181 VVSVLKKEKNIA------DDSQIIRLAL 202 V E ++ D +++RLAL Sbjct: 175 VNEAC-AENDVPMPLASDDAPRVLRLAL 201 >gi|284007614|emb|CBA73228.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus nasoniae] Length = 204 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL+++ GV Y ++ P+ L +IG L + +R+D L Sbjct: 1 MIGRLRGTILEKQPPIVLLELNGVGYEVHMPMTCFYELPEIGQEVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAYQFVSAIEQEAIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E+K + L+ S + S K+ +H A+SAL++LGY Sbjct: 121 AERLVVEMKDRFKGLNGDLFKQSAIDLPGSSAAKQNSH-----DIEAEAVSALISLGYKP 175 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A+ + V N +IR ALRA Sbjct: 176 QDASRMIGRVANGATNC---EALIREALRA 202 >gi|29347388|ref|NP_810891.1| Holliday junction DNA helicase RuvA [Bacteroides thetaiotaomicron VPI-5482] gi|253570551|ref|ZP_04847959.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6] gi|44888484|sp|Q8A6A7|RUVA_BACTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29339288|gb|AAO77085.1| Holliday junction DNA helicase ruvA [Bacteroides thetaiotaomicron VPI-5482] gi|251839500|gb|EES67583.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177 A R++ +LK K ++ + V + + S + A++AL LG+ + Sbjct: 119 TAQRVIVDLKDKIKTMGATVAGGSASAG----MLLQSASVEVQEEAVAALTMLGFAAAPS 174 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V+++LK+E + A ++I+LAL+ Sbjct: 175 QKVVLAILKEEPD-APVEKVIKLALK 199 >gi|285019190|ref|YP_003376901.1| holliday junction resolvasome, DNA-binding subunit protein [Xanthomonas albilineans GPE PC73] gi|283474408|emb|CBA16909.1| putative holliday junction resolvasome, dna-binding subunit protein [Xanthomonas albilineans] Length = 194 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 10/172 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYEMEAPMSTFYDLPDVGREVILFTHYAHKEDSVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQRVTGIGAKIALAVLSGVSVDAFARLITAADVTALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ EL+ +A S + A S A SAL LGY Sbjct: 121 AERMVVELRDRAADFSG----GAPITGQLGADAVS------EATSALQQLGY 162 >gi|332993889|gb|AEF03944.1| Holliday junction DNA helicase motor protein [Alteromonas sp. SN2] Length = 206 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+D GV Y I+ P+ + L +G+ ++ +R+D L Sbjct: 1 MIGRIRGTLAEKQPPEILVDANGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA--QIPGISM 118 FGF ++R F L GVG ++ + +LS ++A + + ++ QN+ V A +PGI Sbjct: 61 FGFADKMERGLFRELIKANGVGPKLGLTILSGMSAGQFLSAV--QNADVSALVSLPGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYG 173 K A R++ ELK + V Q ++ + + +N A SALV LGY Sbjct: 119 KTAERLVVELKDRLAKFGKV--QSIAIPPPSGDLLNTNTLVEVNDTREDAQSALVALGYK 176 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 QA+ + SV K+ + +IR AL+A Sbjct: 177 PAQASKLIDSVYKEG---MESESLIREALKA 204 >gi|262202231|ref|YP_003273439.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM 43247] gi|262085578|gb|ACY21546.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM 43247] Length = 197 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 14/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +ID GV Y + TLS L + G+ TL +R+D + L Sbjct: 1 MIASVRGPVLEVALDHAVIDCGGVGYRVLATPVTLSRL-RRGEESTLLTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM L+ + L ++ ++K + +PGI ++ Sbjct: 60 YGFTEPDARALFALLQTVTGVGPRLAMATLAVLEPEALRRALAESDTKALTSVPGIGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179 A R++ EL+ K + E A P ++ ALV LG+ A Sbjct: 120 AERLVVELRDK-----------VDRPTGESAVGVVAPGGVREQVADALVGLGFTAGPAEK 168 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 AV +VL + AD S +R +L Sbjct: 169 AVAAVLADHPD-ADASTALRQSL 190 >gi|34763029|ref|ZP_00144004.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742027|ref|ZP_04572508.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13] gi|256845368|ref|ZP_05550826.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2] gi|294785335|ref|ZP_06750623.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27] gi|27887289|gb|EAA24385.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429675|gb|EEO39887.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13] gi|256718927|gb|EEU32482.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2] gi|294487049|gb|EFG34411.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27] Length = 194 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 1/145 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145 A I+ +LKGK +L ++ +S Sbjct: 120 AQIIILDLKGKLKNLIYTEEETVSM 144 >gi|323344791|ref|ZP_08085015.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella oralis ATCC 33269] gi|323094061|gb|EFZ36638.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella oralis ATCC 33269] Length = 204 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 24/216 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI I+G + L +++V G+ Y + + T S + GK + L+V T R Sbjct: 1 MIEYIRGELAELTPALAVVEVAGIGYALSISLNTYSAIQGK--EKVKLYVHEALVTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF S +R+ + LL +V GVGA A +LS I+ EL I + +++ + G Sbjct: 59 DSFTLYGFASKQERELYRLLITVSGVGANTARMILSTISPAELCNVIANGDERMLKAVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVN 169 I ++ A RI+ +LK K +V ++ + H+ S P+ +N A+SAL Sbjct: 119 IGLRTAQRIIVDLKDK------IVNSGIAT----ELHVSSEPAAMVNNGIKDEAVSALTM 168 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + AV +LK + ++ + Q+++LAL+ I Sbjct: 169 LGFSPAPSAKAVTEILKADPDLPVE-QVVKLALKQI 203 >gi|255691218|ref|ZP_05414893.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM 17565] gi|260623130|gb|EEX46001.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM 17565] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KTCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLK 118 Query: 120 IASRIMTELKGK-------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ +LK K A S+V + N E A++AL LG+ Sbjct: 119 TAQRVIVDLKDKIKTMGASAAGGSAVGGMLLQAANAEVQE---------EAVAALTMLGF 169 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + V+++LK+E A ++I+LAL+ Sbjct: 170 AAAPSQKVVLAILKEEPE-APVEKVIKLALK 199 >gi|161506974|ref|YP_001576928.1| Holliday junction DNA helicase RuvA [Lactobacillus helveticus DPC 4571] gi|172048184|sp|A8YTI1|RUVA_LACH4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160347963|gb|ABX26637.1| Holliday junction DNA helicase [Lactobacillus helveticus DPC 4571] Length = 196 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 15/173 (8%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 Y+++DV GV Y +Y P T K GD +F+E +R I L+GF S+ D+ F+ L Sbjct: 16 YIVVDVNGVGYKVYSP--TPFAYQK-GDKAKIFIEQVVRDTGITLYGFQSEDDKGLFLKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV G+G + A+ +++ A L E+I K + + PG+ K AS+I+ +LKGK L Sbjct: 73 LSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---L 129 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQ---DQATTAVVSV 184 V + + ++EQ +I S A+N A+ AL+ LGY Q D+ TT + V Sbjct: 130 RDYVAR-LDRQDEEQGNI----SPALNDALLALIALGYTQKEVDRITTKLEEV 177 >gi|261365694|ref|ZP_05978577.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996] gi|288565789|gb|EFC87349.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996] Length = 194 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGRLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS ++A EL ++ ++ K ++ PGI K Sbjct: 61 FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178 A R++ EL+GK +S ++ + P+ + ++ L+ LGY + +A Sbjct: 121 AERMVLELRGKLVSHATA-----------DGLFAATPAADETDDIVNTLIALGYNEREAK 169 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 A+ + K + + +RLAL+ Sbjct: 170 AAIKGIPKG----TEVGEGVRLALK 190 >gi|83816675|ref|YP_444603.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855] gi|294506349|ref|YP_003570407.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8] gi|123726210|sp|Q2S5C8|RUVA_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83758069|gb|ABC46182.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855] gi|294342677|emb|CBH23455.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D L+DV G+ Y ++ P T L + TL ++R+D L Sbjct: 1 MIDYVSGTLVDKTTDSALVDVNGLGYRVHVPTSTYKRLPDTDEEVTLHTYHYLREDDESL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + V VG ++A+ LS +T TEL + ++ + + QI G+ K Sbjct: 61 YGFATKAERTVFETMTGVSRVGPKLALSALSAMTPTELRDHVMEGDKSRLTQISGVGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + L V +D S ++ + +A+ AL LG + A + Sbjct: 121 ADRLIVELRDRLADLD--VLEDTSPLS---GGSDARAEARADALEALTELGLSKADAERS 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + VL+ I +++R AL+A Sbjct: 176 IRQVLRDNAGIQSADELVRRALKA 199 >gi|28211817|ref|NP_782761.1| Holliday junction DNA helicase RuvA [Clostridium tetani E88] gi|44888475|sp|Q891Z7|RUVA_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28204259|gb|AAO36698.1| holliday junction DNA helicase ruvA [Clostridium tetani E88] Length = 197 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 9/194 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+++DY+ ++ G+ Y I+ TL + + L+++ R D I L Sbjct: 1 MYDYIKGIYKGMHKDYITVENNGIGYKIFTSGNTLYETPEKDEEIKLYIQQIPRDDSINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R F LL ++ GVGA+ ++ +LS + +L SI+ +++ ++ + PGI K Sbjct: 61 YGFFTEEERDMFNLLMTISGVGAKSSLSLLSVTSINKLKYSIVTEDTTLLTRAPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K + + D Q H + A+ AL++LGY Q ++ Sbjct: 121 AERIILELKDKFKNDDIISDIDDLDSISNFQLH-------SAEALEALMSLGYSQKESEK 173 Query: 180 AVVSVLKKEKNIAD 193 A+ +V KE ++ D Sbjct: 174 ALKNV-DKENSLED 186 >gi|295839916|ref|ZP_06826849.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74] gi|197696745|gb|EDY43678.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74] Length = 206 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 23/216 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V G+ + C TLS L +IG+ + +R+D + L Sbjct: 1 MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ ++ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNK----EQAHICSMPSFAINAISALVNLGYG 173 A +++ ELK G+ + ++ Q + EQ H +ALV LGY Sbjct: 120 AQKLILELKDRLGQPLGTGTLGAQRRAAAGPAPWTEQLH------------NALVGLGYQ 167 Query: 174 QDQATTAVVSVLKK---EKNIADDSQIIRLALRAIS 206 +A AV +V + ++ + + ++R AL+ ++ Sbjct: 168 PREAEEAVEAVTPQAEAQEGVPEIGPLLRAALQTLN 203 >gi|54294187|ref|YP_126602.1| holliday junction DNA helicase [Legionella pneumophila str. Lens] gi|54297206|ref|YP_123575.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str. Paris] gi|148358830|ref|YP_001250037.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str. Corby] gi|296106875|ref|YP_003618575.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99 Alcoy] gi|81368758|sp|Q5WX47|RUVA_LEGPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81370703|sp|Q5X5R9|RUVA_LEGPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230562|sp|A5IBE1|RUVA_LEGPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|53750991|emb|CAH12402.1| holliday junction DNA helicase [Legionella pneumophila str. Paris] gi|53754019|emb|CAH15490.1| holliday junction DNA helicase [Legionella pneumophila str. Lens] gi|148280603|gb|ABQ54691.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str. Corby] gi|295648776|gb|ADG24623.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99 Alcoy] gi|307610000|emb|CBW99532.1| holliday junction DNA helicase [Legionella pneumophila 130b] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G I ++ L+ DV GV Y + + T + L + T +R+D + Sbjct: 1 MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPIGLHIHTIVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVG ++AM VLS I+ E ++ I +N+ ++ ++PGI K Sbjct: 61 LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ S+ Q D S + Q S S AISAL LGY +A Sbjct: 121 TAERLVVEMR------DSIKQFDGSVSDTFQKQAGSTHS-QQEAISALEALGYKPQEAWK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 V + K+ Q+IR AL+ +S Sbjct: 174 VVNKIDNGNKSC---EQLIREALQILSS 198 >gi|283853683|ref|ZP_06370914.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B] gi|283570924|gb|EFC18953.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 23/214 (10%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + E + +++ GV Y + P + L G LFV T +R+D + Sbjct: 1 MIGYVEGRVLARRERWAIVLTPGGVGYELELPDPVAAALPPQGGQVCLFVHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + DR+ F L + +G R A+ +LSR T +L+ + ++ + ++PGI K Sbjct: 61 LFGFATLDDRETFRTLIGITKLGPRTALAILSRFTTEDLLRIVATGDADALVRVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------NAISALVNLGYG 173 A RI EL K + + + + P AI + I+ L NLGY Sbjct: 121 SAQRIFIELTYKL---------------EGKGPVSAGPHPAIGGGVLADVIAGLTNLGYP 165 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 A+ +VL+ E ++ D +Q +R AL+ ++ Sbjct: 166 DADASRVAGAVLEAEPDL-DVAQALRQALKRLAS 198 >gi|322832435|ref|YP_004212462.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602] gi|321167636|gb|ADW73335.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602] Length = 204 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVHMPMTCFYELPELGQEAIIFTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEKEEITALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + + + + + S A A++AL++LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNHTDITLPASASKAKESDAEGEAVAALISLGYKPPEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V K A+ +IR ALRA Sbjct: 181 MISKVAKPG---AESETLIREALRA 202 >gi|317154312|ref|YP_004122360.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis Aspo-2] gi|316944563|gb|ADU63614.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis Aspo-2] Length = 203 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + ++ VL+ GV Y + P L+ L G +LFV T + + I Sbjct: 1 MIGYLQGTLLAAHDKGLVLLTPGGVGYEVAAPTSVLARLPGRGGEVSLFVHTQVGEKAID 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL D F L S+ +G + A+ +LS A L E +++ ++ +PGI K Sbjct: 61 LFGFLESDDLDLFRTLISIDKLGPKKALAILSMFDAEHLREVAYREDATTLSTVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LK K LS + + V + ++ ++ L LGY +D+ Sbjct: 121 SAKQILWHLKDKVNKLSPAPSRGSAKVEGPRGEY-------LDTLAGLKGLGYSEDEVRP 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 ++ + E ++ D + IR LR I+ Sbjct: 174 MILEIFDAEPDL-DAAGAIRATLRKIAA 200 >gi|253989949|ref|YP_003041305.1| Holliday junction DNA helicase RuvA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639070|emb|CAR67683.1| holliday junction atp-dependent dna helicase ruva (ec 3.6.1.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781399|emb|CAQ84562.1| holliday junction ATP-dependent DNA helicase RuvA [Photorhabdus asymbiotica] Length = 205 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L IG LF +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDIGQETVLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N S A +ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPATAKQTTSDADIEAEAAAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+K AD +IR ALRA+ Sbjct: 181 RMVSKVVKPG---ADCETLIREALRAV 204 >gi|208779418|ref|ZP_03246764.1| holliday junction DNA helicase RuvA [Francisella novicida FTG] gi|254372980|ref|ZP_04988469.1| hypothetical protein FTCG_00553 [Francisella tularensis subsp. novicida GA99-3549] gi|151570707|gb|EDN36361.1| hypothetical protein FTCG_00553 [Francisella novicida GA99-3549] gi|208745218|gb|EDZ91516.1| holliday junction DNA helicase RuvA [Francisella novicida FTG] gi|332678321|gb|AEE87450.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida Fx1] Length = 216 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-------NKEQAHICSMPSFAI--NAISALVNLG 171 A R++ E+ K + +++ + S +QA ++ + +I ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + A ++IR AL+ Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209 >gi|315126271|ref|YP_004068274.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp. SM9913] gi|315014785|gb|ADT68123.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp. SM9913] Length = 205 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 22/200 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L K+GD ++ +R+D L Sbjct: 1 MIGRLNGVLVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGDNAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L GVG ++ + +LS ++A + V + +++ + ++PG+ K Sbjct: 61 FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATALVKLPGVGKKT 120 Query: 121 ASRIMTELKGK----------AISLSSVVQQ--DMSCVNKEQAHICSMPSFAINAISALV 168 A R++ E+K + S S+V++ D + N + A +A+SALV Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPASDATIAN----------NAADDAVSALV 170 Query: 169 NLGYGQDQATTAVVSVLKKE 188 LGY QA AV SV K + Sbjct: 171 ALGYKLPQAQKAVKSVSKPD 190 >gi|255066950|ref|ZP_05318805.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256] gi|255048775|gb|EET44239.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256] Length = 194 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 104/203 (51%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS ++A EL ++ ++ K ++ PGI K Sbjct: 61 FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S ++ + ++ + ++ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVSHAAADGLFAAAPAADETD---------DIVNTLIALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + + K + + +RLAL+ Sbjct: 172 IKGIPKG----TEVGEGVRLALK 190 >gi|161936318|ref|YP_129329.2| Holliday junction DNA helicase RuvA [Photobacterium profundum SS9] gi|90135510|sp|Q6LT49|RUVA_PHOPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 206 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 14/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD---FCTLFVETHMRQDQ 57 MIG++ G I VLIDV G+ Y + P+ L ++G CT F+ +R+D Sbjct: 1 MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFI---VREDA 57 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF +R+ F + GVG ++ + +LS +TA++ V S+ ++ + +IPG+ Sbjct: 58 QLLYGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVG 117 Query: 118 MKIASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 K A R++ E LKG D + N E S + A+SAL+ LGY Sbjct: 118 KKTAERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARA-EDEAVSALIALGYK 176 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA V V+K E + IIR ALR++ Sbjct: 177 ALQAAKVVSQVVKPEMS---SENIIREALRSM 205 >gi|282892421|ref|ZP_06300771.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497823|gb|EFB40184.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 200 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 +I+ G+ Y I+ P T L +IG L+V +R+ L+GF S +R+ F +L + Sbjct: 18 VIETSGIGYKIFIPTSTFGKLAQIGQNVQLYVSFVIREQSQTLYGFFSAEERELFEILLA 77 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-AISLS 136 V G+G + A+ ++ + +T L +I Q+ ++++PG+ K A R++ ELK K I + Sbjct: 78 VSGIGPKTAIALIGHLPSTLLSAAIQGQDITTLSKVPGVGKKTAERLIVELKDKLKIGVH 137 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + + E++ + +A++AL +LGY Q A A+ LK+ D + Sbjct: 138 PAAELVTATPFSEKSQTIT------DALNALTHLGYNQAIAKQAIQKTLKEHSTDIDLAT 191 Query: 197 IIRLALRAI 205 +I L+ I Sbjct: 192 LITSTLKHI 200 >gi|15641848|ref|NP_231480.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591344|ref|ZP_01678632.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80] gi|121730273|ref|ZP_01682649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52] gi|147675231|ref|YP_001217380.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395] gi|153824054|ref|ZP_01976721.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|227081975|ref|YP_002810526.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2] gi|229508057|ref|ZP_04397562.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286] gi|229511704|ref|ZP_04401183.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|229518843|ref|ZP_04408286.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9] gi|229607618|ref|YP_002878266.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236] gi|254848932|ref|ZP_05238282.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10] gi|255745394|ref|ZP_05419343.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101] gi|298498115|ref|ZP_07007922.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757] gi|20455267|sp|Q9KR01|RUVA_VIBCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|172047659|sp|A5F761|RUVA_VIBC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767399|sp|C3LNE9|RUVA_VIBCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|9656374|gb|AAF94994.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546808|gb|EAX56974.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80] gi|121627975|gb|EAX60536.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52] gi|126518426|gb|EAZ75649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|146317114|gb|ABQ21653.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395] gi|227009863|gb|ACP06075.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2] gi|227013744|gb|ACP09954.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395] gi|229343532|gb|EEO08507.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9] gi|229351669|gb|EEO16610.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|229355562|gb|EEO20483.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286] gi|229370273|gb|ACQ60696.1| holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236] gi|254844637|gb|EET23051.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10] gi|255737224|gb|EET92620.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101] gi|297542448|gb|EFH78498.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757] Length = 204 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A + S P A N A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|298385152|ref|ZP_06994711.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14] gi|298262296|gb|EFI05161.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14] Length = 201 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + L +ID GV Y + T S + GK C L++ +R+D Sbjct: 1 MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAIQGK--KNCKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 59 LYGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177 A R++ +LK K ++ + V + + S + A++AL LG+ + Sbjct: 119 TAQRVIVDLKDKIKTMGATVAGGSASAG----MLLQSASVEVQEEAVAALTMLGFAAAPS 174 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V+++LK+E + A ++I+LAL+ Sbjct: 175 QKMVLAILKEEPD-APVEKVIKLALK 199 >gi|238898994|ref|YP_002924676.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259495647|sp|C4K7I5|RUVA_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229466754|gb|ACQ68528.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 204 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 110/213 (51%), Gaps = 20/213 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG I ++L+D+QG+ Y I P+ L ++G +F +R+D L Sbjct: 1 MISRMKGIILEKQPPWILLDIQGMGYDIQLPMTCFYQLPELGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++ + +LS +++ E + ++ ++ + ++PG+ K Sbjct: 61 YGFHHPKERAMFSELIKVNGVGPKLGLAILSGMSSEEFICALEKEDISNLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++ E+K + +L+ S +S V+ + S S AISAL++LGY Sbjct: 121 AERLLVEMKDRIKNLNKNLFKSTADHMLSSVSTD----LSAKSAEAEAISALISLGYKPQ 176 Query: 176 QATTAVVSVLKKEKNIAD---DSQ-IIRLALRA 204 +A + KNIA DSQ +I+ ALR+ Sbjct: 177 EAAQLI-------KNIAQPDLDSQALIKHALRS 202 >gi|302879788|ref|YP_003848352.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans ES-2] gi|302582577|gb|ADL56588.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans ES-2] Length = 193 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DVQGV Y + P+ T L + + L + +R+D L Sbjct: 1 MIGRLSGILLEKTPPQILLDVQGVGYELEVPMSTFYNLPPLHEKVVLHTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVG ++A+ VLS ++ +L +++ + + + +IPG+ K Sbjct: 61 YGFGSTDERIAFRQLLKISGVGPKLALSVLSGLSLNDLADAVANKEAGRLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + AH + S + + ++AL LGY +A A Sbjct: 121 AERLLLELEGK-----------FTVMGVAMAHGVPVTSASGDIVNALQALGYNDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 L K+ +++D IR AL+ +S Sbjct: 170 AKQ-LPKDVSVSDG---IRQALKFLS 191 >gi|209524253|ref|ZP_03272803.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328] gi|209495344|gb|EDZ95649.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328] Length = 206 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 27/209 (12%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG + G + G+Y+ ++ +DV GV Y + R + KIG+ +F H+R Sbjct: 1 MIGYLNGTVAGIYKKTGNRVFLWLDVNGVGYELQILPRMQNLDAKIGENLQVFTHLHIRD 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D + L+GF S +R F L SV G+G ++A+ +L + +LV++I+ N+ ++ + PG Sbjct: 61 DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLALPDLVQAIVGGNTGILTKTPG 120 Query: 116 ISMKIASRIMTELKG------KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 + K A RI ELK K L +V ++S +E+ I +L+ Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAEIQEEVEI------------SLLA 168 Query: 170 LGYGQDQATTAVVSVLKK----EKNIADD 194 LGY + A+ ++ E N A+D Sbjct: 169 LGYTTSEVMQALKAITSHPNLSENNSAED 197 >gi|187735908|ref|YP_001878020.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC BAA-835] gi|187425960|gb|ACD05239.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC BAA-835] Length = 220 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 107/208 (51%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 MI ++G + Y +++DV GV Y + P+ T L + G TL H+R++ Sbjct: 24 MIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDRLNPLPGRELTLKTYLHVRENMQV 83 Query: 60 LFGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF +D +R F+LL + V G+G A+ +L ++ + ++++ + IA+ G+ Sbjct: 84 LYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSVEQFKQAVVGGDVSGIARAKGVGK 143 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A RI+ ELK K + L++ + + A + AL+ LG+ Q ++ Sbjct: 144 KTAERIVLELKDK-VGLAATWEAQAQGATSQAAGDAEL---------ALIALGFKQVESR 193 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + LK + AD ++IR ALR+++ Sbjct: 194 KAIAAHLKDHPD-ADVDELIRAALRSMN 220 >gi|229515226|ref|ZP_04404686.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21] gi|229347931|gb|EEO12890.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21] Length = 204 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A + S P A N A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPTTDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|157145359|ref|YP_001452679.1| Holliday junction DNA helicase RuvA [Citrobacter koseri ATCC BAA-895] gi|166230539|sp|A8AFI0|RUVA_CITK8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157082564|gb|ABV12242.1| hypothetical protein CKO_01099 [Citrobacter koseri ATCC BAA-895] Length = 203 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L + G T+F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPESGKEATVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|269468816|gb|EEZ80420.1| Holliday junction resolvasome, DNA-binding subunit [uncultured SUP05 cluster bacterium] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 22/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L++V G+ Y I CP+ + +G + +L H+++D L Sbjct: 1 MIGQLTGKILEKNPPEILLEVGGIGYEILCPMSSFYEMGS-NENISLHTHFHVKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S ++ F L V G+G +VA+ +LS + L+ ++ ++ ++A+ PGI K Sbjct: 60 YGFISKDEKILFRELIRVNGIGPKVALAILSHLNVASLMNAVANEDDALLAKTPGIGKKT 119 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +++ ELK + + LSS Q ++ N S P+ I A AL LG+ +A Sbjct: 120 AQKLIVELKDRLEKLELSSSAHQIITASN-------SNPN-TIKASQALQALGFKTKEAD 171 Query: 179 TAVVSVLKKEKNIADDS----QIIRLALR 203 + + I DDS ++IR AL+ Sbjct: 172 RMLNA-------INDDSLSIEELIRKALQ 193 >gi|332292213|ref|YP_004430822.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus 4H-3-7-5] gi|332170299|gb|AEE19554.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus 4H-3-7-5] Length = 193 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI + G + +V++D GV Y I + T G++GD L + TH+ ++D Sbjct: 1 MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTF---GRLGDSEALKLHTHLQVKEDSH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF+ ++R+ F LL SV G+GA A +LS + ++ ++I + I I GI Sbjct: 58 TLFGFVEVMEREIFRLLLSVSGIGASTARTMLSSLDPHQIKQAIASNDVATIQSIKGIGA 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ +LK K + + DMS + Q++ A+SAL LG+ + QA Sbjct: 118 KTAQRVILDLKDKILKV-----YDMSSESAVQSNTSKE-----EALSALETLGFARKQAE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +++ KEK A II+ AL+ + Sbjct: 168 KVCTAIV-KEKPDASVETIIKEALKKL 193 >gi|90408541|ref|ZP_01216698.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3] gi|90310360|gb|EAS38488.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3] Length = 207 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+DV GV Y I P+ + L ++G ++ +R+D L Sbjct: 1 MIGRLRGVLLEKQPPEVLLDVSGVGYEIQLPMSSFYPLPEVGQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LL V GVG ++A+ +LS ++A E V I + + ++PG+ K Sbjct: 61 YGFADKHERAMFRLLIKVNGVGPKLALAILSGMSANEFVVCINNEAVSQLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-------AHICSMPSFAINAISALVNLGYG 173 A R++ E+K + L + V D+ E ++ S+ + AISAL+ LGY Sbjct: 121 AERLVVEMKDR---LKNWVGTDLLSPQAESMDMQNGLSNTLSINTAKDEAISALLALGYK 177 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A + +V + + D +IR AL+++ Sbjct: 178 PASAEKCIRNVYQAGMDCED---LIRSALKSM 206 >gi|77360814|ref|YP_340389.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas haloplanktis TAC125] gi|90135604|sp|Q3IIJ1|RUVA_PSEHT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76875725|emb|CAI86946.1| Holliday junction helicase, subunit A [Pseudoalteromonas haloplanktis TAC125] Length = 205 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 22/200 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L K+G+ ++ +R+D L Sbjct: 1 MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGESAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++R F L GVG ++ + +LS ++A + V + ++S + ++PG+ K Sbjct: 61 FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDSTSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGK----------AISLSSVVQQ--DMSCVNKEQAHICSMPSFAINAISALV 168 A R++ E+K + S S+V++ D + N A +A+SALV Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPFSDATIANNA----------ADDAVSALV 170 Query: 169 NLGYGQDQATTAVVSVLKKE 188 +LGY QA AV SV K + Sbjct: 171 SLGYKLPQAQKAVKSVSKPD 190 >gi|148657871|ref|YP_001278076.1| Holliday junction DNA helicase RuvA [Roseiflexus sp. RS-1] gi|166200257|sp|A5UZS3|RUVA_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148569981|gb|ABQ92126.1| Holliday junction DNA helicase subunit RuvA [Roseiflexus sp. RS-1] Length = 197 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 75/131 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + D+V+++ G+ ++IY P ++ LG IG LF +R+D + L Sbjct: 1 MIASIRGILIAVAADHVVVETGGIGWMIYAPRPVIAALGDIGATVRLFTYLLVREDSLTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + RQ F L SV GVG + A+ +LS T EL +I + +A+ P I K+ Sbjct: 61 YGFETVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVTRLARTPRIGKKL 120 Query: 121 ASRIMTELKGK 131 A R++ ELKGK Sbjct: 121 AERLVLELKGK 131 >gi|320352803|ref|YP_004194142.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM 2032] gi|320121305|gb|ADW16851.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM 2032] Length = 208 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 10/211 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + ++DV GV Y + +RT L ++G C L V+T +R+D I L Sbjct: 1 MIASLSGLVQWKGPNMAILDVNGVGYELCISVRTYDALPEVGGTCFLLVQTVVREDAISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F+LL +V G+G ++A +LS I L +I ++ + +PG+ K Sbjct: 61 YGFSRKEEKDLFLLLITVSGIGPKLAQTILSGIGVEALCGAITAKDLSQLTALPGVGKKT 120 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R+ EL K I ++ V +A SAL+NLGY Q A Sbjct: 121 AQRLCVELGEKVGGIGAGLAIEGTPPLVAPAGDS-----QVMADAASALINLGYPQAIAW 175 Query: 179 TAVVSV---LKKEKNIADDSQIIRLALRAIS 206 A+ +V L + ++IR ALR+++ Sbjct: 176 QALRNVEQQLPPGTDAPRVEELIRQALRSLA 206 >gi|160915302|ref|ZP_02077515.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991] gi|158433101|gb|EDP11390.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991] Length = 193 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I D ++I+ G+ Y IY I + ++ L+ H+R+D I L Sbjct: 1 MIAFIKGIIHSYSNDSLIIENNGIGYRIY--ISNPQSV-RLNSEVILYTYQHVREDAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F+ L SV+GVG + A+ +L+ +++E+I + K++ +PGI K Sbjct: 58 FGFTTMEEHDLFLQLISVKGVGPKTALAMLAVCPVKQMIEAIEHNDVKLLKSLPGIGAKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + S +Q KE A + ++AI AL LGY A Sbjct: 118 ASQIVLDLKGKLVEEVSEIQV------KENAEL-------VDAIEALKALGY-----KNA 159 Query: 181 VVSVLKK---EKNIADDSQIIRLAL 202 ++ +KK E++ A Q IR AL Sbjct: 160 EINSIKKELSEESFATSDQYIRKAL 184 >gi|332878178|ref|ZP_08445907.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683916|gb|EGJ56784.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 194 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V+ID QGV Y + + T + L + G+ L+ +++D L Sbjct: 1 MITQLQGKLVEKNPTNVVIDCQGVGYFVNISLNTYAALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA ++ +I+ I + GI K Sbjct: 60 YGFLTKAEREVFVLLISVSGVGAGTARTMLSSLTAAQVRNAIVNGEVATIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L QD + A I ++ + A+SAL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKL-----QDFA-----DAPISAVSTHKEEALSALEVLGFVRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++ + II+ AL+++ Sbjct: 170 VDKIVQAAPDSLSVEDIIKQALKSL 194 >gi|149366014|ref|ZP_01888049.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125] gi|153949523|ref|YP_001401004.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP 31758] gi|161484795|ref|NP_669562.2| Holliday junction DNA helicase RuvA [Yersinia pestis KIM 10] gi|161511391|ref|NP_993241.2| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Microtus str. 91001] gi|161760577|ref|YP_070557.2| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP 32953] gi|162420589|ref|YP_001606843.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola] gi|165928362|ref|ZP_02224194.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. F1991016] gi|165938889|ref|ZP_02227443.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. IP275] gi|166009183|ref|ZP_02230081.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. E1979001] gi|166210491|ref|ZP_02236526.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401440|ref|ZP_02306937.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420007|ref|ZP_02311760.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424505|ref|ZP_02316258.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470862|ref|ZP_02335566.1| Holliday junction DNA helicase motor protein [Yersinia pestis FV-1] gi|170024378|ref|YP_001720883.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis YPIII] gi|186895407|ref|YP_001872519.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis PB1/+] gi|218929164|ref|YP_002347039.1| Holliday junction DNA helicase RuvA [Yersinia pestis CO92] gi|229894771|ref|ZP_04509951.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Pestoides A] gi|229897474|ref|ZP_04512630.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898120|ref|ZP_04513269.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901979|ref|ZP_04517100.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Nepal516] gi|270490837|ref|ZP_06207911.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27] gi|294503877|ref|YP_003567939.1| Holliday junction DNA helicase motor protein [Yersinia pestis Z176003] gi|20455249|sp|Q8ZEU6|RUVA_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90146256|sp|Q66AU0|RUVA_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167012664|sp|A7FIC6|RUVA_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560143|sp|B2K323|RUVA_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560144|sp|A9QYX3|RUVA_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560145|sp|B1JLL1|RUVA_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115347775|emb|CAL20692.1| Holliday junction DNA helicase [Yersinia pestis CO92] gi|149292427|gb|EDM42501.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125] gi|152961018|gb|ABS48479.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP 31758] gi|162353404|gb|ABX87352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola] gi|165913252|gb|EDR31875.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. IP275] gi|165919645|gb|EDR36978.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991738|gb|EDR44039.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. E1979001] gi|166207671|gb|EDR52151.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961702|gb|EDR57723.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049136|gb|EDR60544.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056387|gb|EDR66156.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750912|gb|ACA68430.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis YPIII] gi|186698433|gb|ACC89062.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis PB1/+] gi|229680875|gb|EEO76970.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Nepal516] gi|229688836|gb|EEO80903.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229693811|gb|EEO83860.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702244|gb|EEO90263.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Pestoides A] gi|262362004|gb|ACY58725.1| Holliday junction DNA helicase motor protein [Yersinia pestis D106004] gi|262365859|gb|ACY62416.1| Holliday junction DNA helicase motor protein [Yersinia pestis D182038] gi|270339341|gb|EFA50118.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27] gi|294354336|gb|ADE64677.1| Holliday junction DNA helicase motor protein [Yersinia pestis Z176003] gi|320015265|gb|ADV98836.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 204 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + ++ A S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 LVSKIAKPG---ADCETLIRDALRA 202 >gi|163802051|ref|ZP_02195947.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4] gi|159174192|gb|EDP59000.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4] Length = 204 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + S+ D+ + A S + + N AISAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + Q+IR AL+++ Sbjct: 178 ASKVVSQIAKPDMT---SEQLIREALKSM 203 >gi|89068047|ref|ZP_01155464.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus HTCC2516] gi|89046286|gb|EAR52343.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus HTCC2516] Length = 222 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 29/194 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ D+VLI V GV Y++Y R ++ L G+ +LF + +R+D ++L Sbjct: 1 MIGRLTGRLDYRAGDHVLISVGGVGYVVYVSERVMAALPGNGEPVSLFTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + +I L +++ I+ G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDARAISVAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-------------------- 160 A R++ EL+ KA + M+ +A + +P+ A Sbjct: 121 AERVVRELRDKAPGV-------MALGGSIEAALGEVPAAADDGAVLEPADAAPPRAPAGA 173 Query: 161 --INAISALVNLGY 172 +A+SALVNLGY Sbjct: 174 AQSDALSALVNLGY 187 >gi|254506186|ref|ZP_05118330.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16] gi|219551004|gb|EED27985.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16] Length = 223 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 111/210 (52%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + +LI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 20 VIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 79 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 80 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 139 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+K + S+ D+ + A + S P+ A N A+SAL+ LGY Sbjct: 140 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPVDSTPT-ATNSAEEEAVSALLALGYKPT 195 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ V ++K + ++IR AL+++ Sbjct: 196 QASKVVAQIIKPGMS---SEELIRDALKSM 222 >gi|229817634|ref|ZP_04447916.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM 20098] gi|229785423|gb|EEP21537.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM 20098] Length = 205 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 110/211 (52%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G +E + +I+V V Y + P LS L G ++ ++ QD I L Sbjct: 1 MIGSLRGTVEMVDTTQAVIEVGSVGYEVRMPSADLSRL-HTGQETRVWTYLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL ++ F+ L V GVG +VA+ +LS +TA +L +++ ++ +A+ PGI K Sbjct: 60 YGFLDSSSKKMFLQLIKVNGVGPKVALSLLSTLTANDLAKAVADNDATALAKAPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG +I+L + ++ Q+ + P A + L++LG+ Q A A Sbjct: 120 AQKIILELKG-SINLEDLGEK------APQSGASTDPG-AKQVVEGLMSLGWHQQDAQYA 171 Query: 181 VVSVLKKEKNIA------DDSQIIRLALRAI 205 V + IA D Q++RLAL ++ Sbjct: 172 VQEACES-NGIAMPLSQEDVPQVLRLALTSL 201 >gi|296101800|ref|YP_003611946.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056259|gb|ADF60997.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 204 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L G +F + +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L + V S A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPVSDDDAEQEAVAALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K + A +IR ALRA Sbjct: 181 MVSKIAKPD---ASSETLIREALRA 202 >gi|89075787|ref|ZP_01162175.1| Holliday junction DNA helicase motor protein [Photobacterium sp. SKA34] gi|89048519|gb|EAR54094.1| Holliday junction DNA helicase motor protein [Photobacterium sp. SKA34] Length = 207 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 11/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ L++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120 Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E+K G+ + + D + N + A+SALV LGY Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPTL--DTAASNAPIQDPSNQARAEDEAVSALVALGYKP 178 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V V + E + IIR ALR++ Sbjct: 179 QIAAKVVSQVTQPEMS---SEAIIRDALRSM 206 >gi|319442165|ref|ZP_07991321.1| Holliday junction DNA helicase RuvA [Corynebacterium variabile DSM 44702] Length = 214 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 15/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G + D+V+I+ GV Y+ RTL+ L + G+ +FV T M R+D Sbjct: 1 MIASLRGAVVDKGLDHVVIECAGVGYLCQATARTLADLPR-GE--EVFVLTTMVVREDSQ 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+ F R+ F L+QSV GVGAR+AM +LS +T E+ ++ + K + + PG+ Sbjct: 58 TLYAFPDVASRELFALVQSVSGVGARMAMALLSVLTPAEIAAAVAEGDVKTLQRAPGVGK 117 Query: 119 KIASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 ++A R+ +LKGK A++ S D + A + + + ALV LG+ + Sbjct: 118 RLADRMSVDLKGKLDAYAVAQPSGAPGDAVDLTSGDAAVDD--AVTAQVVEALVGLGFPE 175 Query: 175 DQATTAVVSVLKK----EKNIADDSQIIRLAL 202 A V S++ + + + D S ++R AL Sbjct: 176 ASAADTVTSLVAETGGGDGSSPDASVLLRSAL 207 >gi|189499398|ref|YP_001958868.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides BS1] gi|229560017|sp|B3ELQ8|RUVA_CHLPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189494839|gb|ACE03387.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides BS1] Length = 200 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 7/190 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D +I+V GV Y++ T L + G + H+++D ++L Sbjct: 1 MFTYFRGELIEASPDEAVIEVSGVGYLLSISATTYRQLPEPGREVLVLAHLHVKEDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + +RQ F LL S+ GVG ++A+ +LS + E+ E+I+ + + +I G+ K Sbjct: 61 FGFLEEEERQLFRLLLSISGVGPKLALAILSGLQVHEIQEAIVSNMPERLFEITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + L S K + + S S +A++ALV LG+ + A A Sbjct: 121 AARIVLELRDRILKLRP------SGGTKSVSRL-SESSMRDDAVNALVTLGFLRSVAQKA 173 Query: 181 VVSVLKKEKN 190 V L +N Sbjct: 174 VTESLTSLRN 183 >gi|227888712|ref|ZP_04006517.1| crossover junction endoribonuclease subunit A [Lactobacillus johnsonii ATCC 33200] gi|227850739|gb|EEJ60825.1| crossover junction endoribonuclease subunit A [Lactobacillus johnsonii ATCC 33200] Length = 192 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 14/193 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + +Y Y+++DV GV Y I CP + T++VE +R I L Sbjct: 1 MFEYLKGIVTKIYPAYIVLDVNGVGYKILCPTPYSYDENQP---ATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK V K A PS +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKL----------GDYVKKSAAAADLTPSLQ-DALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIAD 193 + K +N AD Sbjct: 167 TPKLAKLPENTAD 179 >gi|254490165|ref|ZP_05103356.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxidans DMS010] gi|224464651|gb|EEF80909.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxydans DMS010] Length = 198 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I +++DV GV Y + P+ T L + D TLF +R+D L Sbjct: 1 MIGRLRGIILEKQPPELVLDVHGVGYELSAPMSTFFNLPALNDEVTLFTHMVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F ++ +R F L V GVGA++A+ +LS S+ ++ + ++PG+ K Sbjct: 61 YAFATERERLLFRSLLKVNGVGAKLALTILSGSDVDTFARSVQEGDTASLTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + +SS + D + H+ A+ ALV LGY +A Sbjct: 121 AERLIVEMRDRLKEVSSAMGLDAIVTD----HVKPAAGAKSEAVEALVALGYKAAEADKM 176 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + S + N Q+IR AL+ Sbjct: 177 LRSFDTEGMNT---EQLIRQALQ 196 >gi|118497616|ref|YP_898666.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. novicida U112] gi|195536317|ref|ZP_03079324.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. novicida FTE] gi|166230552|sp|A0Q6P7|RUVA_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118423522|gb|ABK89912.1| holliday junction DNA helicase, subunit A [Francisella novicida U112] gi|194372794|gb|EDX27505.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. novicida FTE] Length = 216 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-------NKEQAHICSMPSFAI--NAISALVNLG 171 A R++ E+ K + +++ + S +QA ++ + +I ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + A ++IR AL+ Sbjct: 181 YKQKDAEKMSRSAMGDATTAA---EVIRKALQ 209 >gi|56751811|ref|YP_172512.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC 6301] gi|81301107|ref|YP_401315.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC 7942] gi|81561725|sp|Q5N128|RUVA_SYNP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123769196|sp|Q31KU1|RUVA_SYNE7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56686770|dbj|BAD79992.1| holliday junction DNA helicase RuvA [Synechococcus elongatus PCC 6301] gi|81169988|gb|ABB58328.1| Holliday junction DNA helicase subunit RuvA [Synechococcus elongatus PCC 7942] Length = 207 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 4/135 (2%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G++ G+ + +L+DVQGV Y + P R+L L G +F +R+D Sbjct: 1 MIGYLQGSLAGVRKQSGRLLLLLDVQGVGYEVQTPARSLVELPAAGQSLQVFTHLQVRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q LFGFL +R F L SV G+G ++ + +L ++ ELV++I+ N++++++ PG+ Sbjct: 61 QWLLFGFLQMAERDLFRQLISVSGIGPQLGLALLDSLSLAELVQAIVAGNTRLLSRTPGV 120 Query: 117 SMKIASRIMTELKGK 131 K A R+ EL+ K Sbjct: 121 GAKTAERLALELRSK 135 >gi|332161518|ref|YP_004298095.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665748|gb|ADZ42392.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860793|emb|CBX71080.1| holliday junction ATP-dependent DNA helicase ruvA [Yersinia enterocolitica W22703] Length = 205 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L IG +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A R++ E+K + L+ + ++ + ++ + I A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNIGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RLVSKIAKPG---ADCEALIRDALRA 203 >gi|90580117|ref|ZP_01235925.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14] gi|90439002|gb|EAS64185.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14] Length = 207 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 11/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ L++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120 Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E+K G+ + + D + N + A+SALV LGY Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPAL--DTAASNAPIQDPSNQARAEDEAVSALVALGYKP 178 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V V + E + IIR ALR++ Sbjct: 179 QIAAKVVSQVTQPEMS---SEAIIRDALRSM 206 >gi|153217384|ref|ZP_01951135.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587] gi|153830574|ref|ZP_01983241.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39] gi|229520306|ref|ZP_04409732.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80] gi|229523864|ref|ZP_04413269.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis VL426] gi|229529131|ref|ZP_04418521.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)] gi|124113602|gb|EAY32422.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587] gi|148873936|gb|EDL72071.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39] gi|229332905|gb|EEN98391.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)] gi|229337445|gb|EEO02462.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis VL426] gi|229342672|gb|EEO07664.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80] gi|327484398|gb|AEA78805.1| Holliday junction DNA helicase RuvA [Vibrio cholerae LMA3894-4] Length = 204 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A + S P A N A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|307326761|ref|ZP_07605953.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu 4113] gi|306887524|gb|EFN18518.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D +I+V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAAVAPDTAVIEVGGIGMALQCTPATLAGL-RVGQQARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDVLRLAVSTGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK + L S V A + P ++ +ALV LGY +A Sbjct: 120 AQRLLLELKDRLGEPLGSAV---------PSARSAAAPGWSDQLHTALVGLGYATREADE 170 Query: 180 AVVSVLK--KEKNIADDSQIIRLALRA 204 AV +V +E A + L LRA Sbjct: 171 AVAAVTPQAEEAVAAGGKPQVALLLRA 197 >gi|288930025|ref|ZP_06423866.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317 str. F0108] gi|288328684|gb|EFC67274.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317 str. F0108] Length = 205 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI IKG++ L +I+ GV Y + + T + + GK D LFV T R Sbjct: 1 MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYTAIQGK--DKVKLFVHEALVTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF + +R+ + LL SV GVGA A +LS ++ EL I + K++ + G Sbjct: 59 DSYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPAELCNVIAAGDDKMLKTVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I K A RI+ +LK K + +S V Q++S A + + + A+ AL LG+ Sbjct: 119 IGAKTAQRIIVDLKDKIV--TSGVAQELSVPTNANATVMNT-AVKDEAVGALTMLGFAPS 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +LK++ + + Q+++ AL+ I Sbjct: 176 ASAKVVVEILKEQPELPVE-QVVKAALKMI 204 >gi|88811437|ref|ZP_01126692.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis Nb-231] gi|88791326|gb|EAR22438.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis Nb-231] Length = 203 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 103/203 (50%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LIDVQGV Y + P+ T L G+ TL +++D L Sbjct: 1 MIGRLRGILLEKQPPRLLIDVQGVGYEVEAPMSTFYELPAQGEAITLRTHLAIKEDGHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R F L V GVG ++A+ LS + E + + +++ + ++PG+ K Sbjct: 61 YGFHTEQERALFRSLIRVSGVGPKMALAFLSGMRTEEFLWCVRQRDTAALIRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + LS++ Q + + A+SAL+ LGY +A Sbjct: 121 AERLIVEMQDR---LSALATQASTAAGASFSAAGGANEAFTEAMSALLALGYKTPEAQQL 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + + + E + ++IRLALR Sbjct: 178 LAGLAEAELS---SEELIRLALR 197 >gi|86131995|ref|ZP_01050591.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia donghaensis MED134] gi|85817329|gb|EAQ38509.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia donghaensis MED134] Length = 193 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 22/210 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V++D GV Y I + T LG G+ L+ +++D L Sbjct: 1 MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGQLGD-GEALKLYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++R+ F LL SV G+GA A +LS + ++ ++I + I I GI K Sbjct: 60 YGFMEVMEREIFRLLLSVSGIGASTARTMLSSLEPNQIKQAIASNDVATIQSIKGIGAKT 119 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + R++ +LK K IS S VQ S NKE+ A+SAL LG+ + Sbjct: 120 SQRVILDLKDKILKVYDISTESAVQ---SNTNKEE------------ALSALETLGFARK 164 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA +++ KEK A II+ AL+ + Sbjct: 165 QAEKVCLAI-TKEKPDASVETIIKEALKKL 193 >gi|261211909|ref|ZP_05926196.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341] gi|260839259|gb|EEX65891.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341] Length = 204 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A I S+P A N A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPIDSVPMMAQNAQEEAVSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V V K + ++IR AL+++ Sbjct: 178 ASKVVSQVAKAGMSC---EELIREALKSM 203 >gi|94501014|ref|ZP_01307538.1| Holliday junction DNA helicase motor protein [Oceanobacter sp. RED65] gi|94426761|gb|EAT11745.1| Holliday junction DNA helicase motor protein [Oceanobacter sp. RED65] Length = 203 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +LI+V G+ Y ++ P+ T+ L ++G TL +R+D L Sbjct: 1 MIGRISGTLLEKLPPELLIEVNGLGYEVHAPMTTIYALPEVGQGVTLHTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++A+ +LS I V S+ +S + +IPGI K Sbjct: 61 YGFSDKQQRALFRALIKVSGVGPKLALAILSGIETDTFVRSVHDGDSATLVRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + V D+ + S + A AL+ LGY + T A Sbjct: 121 AERLIVEMKDRLKEWQ--VDSDLPLMAAANPAPASQDQWIQEAEGALIALGY---KPTEA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ ++ + +IRLAL+ + Sbjct: 176 AKAIAAIKEPVNGSEDLIRLALKGM 200 >gi|308177527|ref|YP_003916933.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter arilaitensis Re117] gi|307744990|emb|CBT75962.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter arilaitensis Re117] Length = 205 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +IDV G ++ TLS L G T+F +R+D + L Sbjct: 1 MISSLTGTVQAVALNTAVIDVNGFGMLVNATPGTLSAL-HAGREATVFTSMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F +L SV G+G R + +L+ + E+ + +++ ++ GI K Sbjct: 60 FGFATAEERDVFEVLISVSGIGPRTGLAILAVHSPEEVRIAANTKDTAAFTKVSGIGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL GK + + V N + + I AL LG+ + AT Sbjct: 120 ASRIVLELNGKLVPTGAPVPSSSGGGN--------VSVWEPQVIEALTGLGWSEKDATAT 171 Query: 181 VVSVLKKEKNI---ADDSQIIRLALRAISC 207 + S+ K + ++ + ++I+R ALR++S Sbjct: 172 LKSLSKADPDVIAAGNVAEILRAALRSMSS 201 >gi|291617754|ref|YP_003520496.1| RuvA [Pantoea ananatis LMG 20103] gi|291152784|gb|ADD77368.1| RuvA [Pantoea ananatis LMG 20103] Length = 204 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEAHGVGYEVHMPMTCFYELPDLNHEAVIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+K + + D+ + P N A++ALV+LGY Sbjct: 121 AERLVVEMKDRFKGMHG----DLFGGDSAFTLTTPGPEPETNDAESEAVAALVSLGYKPQ 176 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ + V + + AD +IR ALRA Sbjct: 177 EASRMISKVGRPD---ADCETLIREALRA 202 >gi|23335124|ref|ZP_00120362.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Bifidobacterium longum DJO10A] gi|23465306|ref|NP_695909.1| holliday junction DNA helicase RuvA [Bifidobacterium longum NCC2705] gi|189439315|ref|YP_001954396.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium longum DJO10A] gi|227547258|ref|ZP_03977307.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621474|ref|ZP_04664505.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|44888506|sp|Q8G6B8|RUVA_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560004|sp|B3DRX9|RUVA_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|23325944|gb|AAN24545.1| probable holliday junction DNA helicase RuvA [Bifidobacterium longum NCC2705] gi|189427750|gb|ACD97898.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium longum DJO10A] gi|227212217|gb|EEI80113.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515935|gb|EEQ55802.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 208 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 105/210 (50%), Gaps = 17/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y + LS L G +F ++ QD I L Sbjct: 1 MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRL-HAGQDTRVFTYMNLSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL ++ F+ L V G+G +VA +LS +T ++L +I ++ +A+ PG+ K Sbjct: 60 HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178 A +I+ ELKG +I LS + + S QA P + + L++LG+ Q A Sbjct: 120 AQKIILELKG-SIDLSQI--EGASA----QAATSKSPVDTGTEQVVEGLISLGWRQQDAQ 172 Query: 179 TAVVSVLKKEKNIA-----DD-SQIIRLAL 202 AV E +I DD +++RLAL Sbjct: 173 QAVAEAC-AENDIPTPLATDDVPRVLRLAL 201 >gi|226942024|ref|YP_002797098.1| RuvA [Laribacter hongkongensis HLHK9] gi|254766965|sp|C1D5S2|RUVA_LARHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226716951|gb|ACO76089.1| RuvA [Laribacter hongkongensis HLHK9] Length = 202 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 22/214 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +L+D GV Y + P+ T L + + L+ +R+D L Sbjct: 1 MIGRLSGTLLEKHPPQILVDAGGVGYEVDVPMSTFCRLPGLNEPVVLWTHMAVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F L + GVG ++A+ +LS + EL ++ ++ K ++++PGI K Sbjct: 61 FGFAGRAERELFRQLIRISGVGGKLALALLSSLEPDELARAVAQEDIKTLSRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSV--------VQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ EL+GK SL S + N E+A I AL LGY Sbjct: 121 AERLILELRGKLGSLPSADLLSPAPAAGAALLVENDERADIS----------QALQALGY 170 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A A+ SV + D + IRLAL+A++ Sbjct: 171 SAREAEAALKSV----PDGTDVATGIRLALKALA 200 >gi|300112852|ref|YP_003759427.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113] gi|299538789|gb|ADJ27106.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113] Length = 202 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 5/182 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L+DVQGV Y + P+ T L +G L+ +R D L Sbjct: 1 MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F S+ +R F L V GVGA++ +G+LS I A + ++ + ++PGI K Sbjct: 61 YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A R++ E++ + + +M C + S+P+ + A+SALV LGY + A+ Sbjct: 121 AERLIIEMRDRLLDRPESRIAEM-CSDTVDG---SVPAGTVAEAVSALVALGYKPNDASR 176 Query: 180 AV 181 V Sbjct: 177 TV 178 >gi|158320755|ref|YP_001513262.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii OhILAs] gi|167012655|sp|A8MHI4|RUVA_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158140954|gb|ABW19266.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii OhILAs] Length = 194 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 10/184 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + D ++++V G+ Y I+ I ++S + K GD T++ +R+D++ L Sbjct: 1 MFEYLKGTVADILIDKIIVEVNGIGYRIHSTIHSVSQIKK-GDAITVYTHLVVREDELSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S + F L SV +G +VA G+LS T +L I+ ++ +++ PG+ K Sbjct: 60 YGFMSIEELDMFQKLISVSKIGPKVASGILSAYTPNKLSAYILSKDISALSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + ++VV D + N + A+ AL+ LGY + ++ A Sbjct: 120 AERIILELKDK-VDKTNVV-YDYTLFNDDHKDDD-------EAVQALMALGYSKLESEKA 170 Query: 181 VVSV 184 V +V Sbjct: 171 VEAV 174 >gi|52841519|ref|YP_095318.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81377601|sp|Q5ZW00|RUVA_LEGPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52628630|gb|AAU27371.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 199 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G I ++ L+ DV GV Y + + T + L + T +R+D + Sbjct: 1 MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPVGLHIHTIVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVG ++AM VLS I+ E ++ I +N+ ++ ++PGI K Sbjct: 61 LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ S+ Q D S + Q S S AISAL LGY +A Sbjct: 121 TAERLVVEMR------DSIKQFDGSVSDTFQKQAGSTHS-QQEAISALEALGYKPQEAWK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 + + K+ Q+IR AL+ +S Sbjct: 174 VMNKIDNGNKSC---EQLIREALQILSS 198 >gi|318075775|ref|ZP_07983107.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actF] Length = 210 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 12/190 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V G+ + C TLS L +IG+ + +R+D + L Sbjct: 1 MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ ++ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ ELK G+ + ++ Q + P + +ALV LGY +A Sbjct: 120 AQKLILELKDRLGQPLGTGTLGAQRRAAAGP--------PPWTEQLHTALVGLGYQPREA 171 Query: 178 TTAVVSVLKK 187 AV +V + Sbjct: 172 EEAVEAVTPQ 181 >gi|256827686|ref|YP_003151645.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium curtum DSM 15641] gi|256583829|gb|ACU94963.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium curtum DSM 15641] Length = 194 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D +++DV GV + + ++LS L +G + +R+D + L Sbjct: 1 MIASLKGTLVAREADGIVLDVGGVGFSVGMSTQSLSRLPSVGVTVQIHTYLQVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++ F L SV G+G +VA+ LS T L +I+ + +++IPGI K Sbjct: 61 FGFTSVKEKALFEKLLSVSGIGPKVALSALSSFTPDALTSAIMTNDVTGVSRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+G ++ ++ M+ + Q H A+ L+ LG+ +A A Sbjct: 121 AQRIILELQG-SLDVAEQTSDQMAVPSDTQLH--------HRALDDLLALGFSSTEAELA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 LK A ++ +++ AL+ Sbjct: 172 ----LKGAPKDATEASLVQYALK 190 >gi|89256283|ref|YP_513645.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica LVS] gi|115314735|ref|YP_763458.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica OSU18] gi|156502349|ref|YP_001428414.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167011087|ref|ZP_02276018.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica FSC200] gi|254367618|ref|ZP_04983639.1| holliday junction DNA helicase subunit A [Francisella tularensis subsp. holarctica 257] gi|254369266|ref|ZP_04985278.1| holliday junction DNA helicase [Francisella tularensis subsp. holarctica FSC022] gi|290953118|ref|ZP_06557739.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica URFT1] gi|295313646|ref|ZP_06804230.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica URFT1] gi|122325244|sp|Q0BM63|RUVA_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123094517|sp|Q2A3Q7|RUVA_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230551|sp|A7NBV5|RUVA_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89144114|emb|CAJ79371.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. holarctica LVS] gi|115129634|gb|ABI82821.1| crossover junction endodeoxyribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|134253429|gb|EBA52523.1| holliday junction DNA helicase subunit A [Francisella tularensis subsp. holarctica 257] gi|156252952|gb|ABU61458.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122216|gb|EDO66356.1| holliday junction DNA helicase [Francisella tularensis subsp. holarctica FSC022] Length = 216 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + A ++IR AL+ Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209 >gi|304317016|ref|YP_003852161.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778518|gb|ADL69077.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 188 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 14/184 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I DYV+++ G+ + I P TL L D L+ H+++D + Sbjct: 1 MIDYIKGAIVERGIDYVVVETLGIGFKIIVPTSTLRELPNTNDIIKLYTYLHVKEDGFQF 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F L +V GVG + A+ +LS I+ +I +SK+I + PGI K Sbjct: 61 YGFLTINEMEIFKKLIAVNGVGPKAAVSILSTISIDNFYNAIKNGDSKIIEKSPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +N +A + + + ++AL++LGY + ++ +A Sbjct: 121 AQRIILELKDKLF------------INNAEA--VKIDDASEDVLNALLSLGYTRQESISA 166 Query: 181 VVSV 184 + + Sbjct: 167 LYGI 170 >gi|134302038|ref|YP_001122007.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis WY96-3418] gi|166230553|sp|A4IY85|RUVA_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134049815|gb|ABO46886.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis WY96-3418] Length = 216 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFIVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + A ++IR AL+ Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209 >gi|317121686|ref|YP_004101689.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis DSM 12885] gi|315591666|gb|ADU50962.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis DSM 12885] Length = 223 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 76/131 (58%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L D V IDV GV + + +T L G+ L +R+DQ L Sbjct: 1 MIAFLRGELVALAGDEVWIDVGGVGFRVAVSRQTQRRLPPAGEPVRLLTRLVVREDQWSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V GVG RVA+ VLS ++ EL +++LQ+ ++ ++PG+ K+ Sbjct: 61 YGFATADEQAAFDALLTVSGVGPRVALAVLSVLSPEELRRAVVLQDPALLTRVPGVGPKL 120 Query: 121 ASRIMTELKGK 131 A R++TEL+ + Sbjct: 121 ARRLLTELRDR 131 >gi|123442635|ref|YP_001006612.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166231457|sp|A1JRJ9|RUVA_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122089596|emb|CAL12445.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 205 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L IG +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + + ++ + I A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RLVSKIAKPG---ADCETLIRDALRA 203 >gi|110597586|ref|ZP_01385871.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM 13031] gi|110340706|gb|EAT59183.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM 13031] Length = 200 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + L + +++V G+ Y T L + G L+ +R+D +L Sbjct: 1 MFAYFRGRLVSLLPEEAVVEVSGIAYRFLISASTSRQLPETGSEVLLYSHLSVREDAHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +RQ F LL GVG ++A+ VLS + E+ ++I+ + + I G+ K Sbjct: 61 YGFITEAERQMFRLLILTSGVGPKLALAVLSGLQVAEVYDAILANTPERLYGITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + LS + A + S +AI+ALV LG+ + A Sbjct: 121 AARIILELRDKILKLSPA-----GTIAAPSAQLSS--RMRDDAINALVTLGFSRVTVQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+L+K ++ + ++I+ AL +I Sbjct: 174 VDSILEKNSALSVE-EVIKSALVSI 197 >gi|318605500|emb|CBY26998.1| holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. palearctica Y11] Length = 205 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L IG +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + + ++ + I A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RLVSKIAKPG---ADCEALIRDALRA 203 >gi|218281325|ref|ZP_03487813.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989] gi|218217510|gb|EEC91048.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989] Length = 192 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 16/178 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + D V++DV GV Y +Y LS K+ + L+ H+R+D I L Sbjct: 1 MIAFVNGIVKIIRNDRVVLDVHGVGYEVYLA-NALSQ--KMNEELFLYTYQHVREDAILL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ + D + FM L +V+G+G + A +LS + E++E+I + K + +PGI K Sbjct: 58 FGFIKEEDYEVFMRLINVKGIGPKTAQTMLSVCSGKEMIEAIENDDIKRLKSLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ +LKGK +SL + D N + AL++LGY +Q T Sbjct: 118 AGQIVLDLKGKFVSLET---SDSPVSNPVWTQVQ----------DALLSLGYKTNQLT 162 >gi|330445532|ref|ZP_08309184.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489723|dbj|GAA03681.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 207 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 11/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ L++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120 Query: 121 ASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E+K G+ + + D + N + A+SAL+ LGY Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPAL--DTAASNAPIQDPANQARAEDEAVSALIALGYKP 178 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V V + E + IIR ALR++ Sbjct: 179 QIAAKVVSQVTQPEMS---SEAIIRDALRSM 206 >gi|107021766|ref|YP_620093.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU 1054] gi|116688712|ref|YP_834335.1| Holliday junction DNA helicase motor protein [Burkholderia cenocepacia HI2424] gi|161525864|ref|YP_001580876.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC 17616] gi|170732009|ref|YP_001763956.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia MC0-3] gi|189349415|ref|YP_001945043.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC 17616] gi|221202296|ref|ZP_03575330.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2M] gi|221209110|ref|ZP_03582104.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2] gi|221214501|ref|ZP_03587472.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1] gi|123371880|sp|Q1BZ35|RUVA_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230524|sp|A0K4L5|RUVA_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560009|sp|B1JVV4|RUVA_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560011|sp|A9AH72|RUVA_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|105891955|gb|ABF75120.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU 1054] gi|116646801|gb|ABK07442.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia HI2424] gi|160343293|gb|ABX16379.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC 17616] gi|169815251|gb|ACA89834.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia MC0-3] gi|189333437|dbj|BAG42507.1| holliday junction DNA helicase [Burkholderia multivorans ATCC 17616] gi|221165758|gb|EED98233.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1] gi|221171014|gb|EEE03467.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2] gi|221177870|gb|EEE10283.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2M] Length = 193 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + S + A + ++AL+ LGY + + A Sbjct: 121 AERLLLELKGKLGADLGALAGAASASD-----------HATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|146312076|ref|YP_001177150.1| Holliday junction DNA helicase RuvA [Enterobacter sp. 638] gi|167012660|sp|A4WBL9|RUVA_ENT38 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145318952|gb|ABP61099.1| Holliday junction DNA helicase subunit RuvA [Enterobacter sp. 638] Length = 203 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPDAGKEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAHQFVNAVEREDPAALIKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPNGPTSDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K + A+ +IR ALRA Sbjct: 181 VSKIAKPD---ANSETLIREALRA 201 >gi|322437324|ref|YP_004219536.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9] gi|321165051|gb|ADW70756.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9] Length = 196 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y + + T S L + G LF+ T + ++Q+ L Sbjct: 1 MIAHLRGLLLFKSTNQAVVECGGVGYDVAISVATYSALPREGAEAKLFIFTKVAEEQLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ F L ++ G+G ++A+ VLS I A LV +I + + +IPGI K Sbjct: 61 FGFSDRQEKSLFEKLLTITGIGPKLAITVLSGIAADRLVTAIRGGDHDTLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +++ + V Q+H + + +SALVNLGY + QA A Sbjct: 121 AERVVLELKDKLDDMAT------APVAAVQSHGPA----GDDVLSALVNLGYARPQAQKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L+ + R A+ I Sbjct: 171 IEMALRDPGAAGSFEVLFRAAMNHI 195 >gi|238751590|ref|ZP_04613080.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380] gi|238710152|gb|EEQ02380.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380] Length = 204 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + + A S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASAAKTSDADIEAEAASALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 LVGKIAKPG---ADCETLIRDALRA 202 >gi|149191831|ref|ZP_01870068.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1] gi|148834349|gb|EDL51349.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1] Length = 205 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y I P+ L +IG ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVGGVGYEIQMPMSCFYELPEIGQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS ++AT+ V + ++ + ++PG+ K Sbjct: 61 YGFNTVRERALFREVIKANGVGPKLGLGILSGMSATQFVACVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+K + L D+ + A + S+ + + A+SAL+ LGY Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPVDSVGAMNADNAEEEAVSALLALGYKPT 177 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ V V K + +IR ALRA+ Sbjct: 178 QASKVVSQVAKPDMT---SEALIREALRAM 204 >gi|187931869|ref|YP_001891854.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. mediasiatica FSC147] gi|229560033|sp|B2SH67|RUVA_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187712778|gb|ACD31075.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. mediasiatica FSC147] Length = 216 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVIEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + A ++IR AL+ Sbjct: 181 YKQKDAEKMARSAMGDATTAA---EVIRKALQ 209 >gi|295094803|emb|CBK83894.1| Holliday junction DNA helicase subunit RuvA [Coprococcus sp. ART55/1] Length = 200 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E ++Y++I+ G+ Y + + + L + + ++R+D+I L Sbjct: 1 MISYIRGALEIKGDNYIVIECGGIGYQLMVSGKFMEKLPPVHSEIKVSTYMYIREDEICL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F +L V GVG +VAM +LS +T EL ++I ++ K I++ GI K Sbjct: 61 FGFENADELNVFKILLGVSGVGPKVAMSLLSTLTVNELRLAVISEDVKAISKANGIGAKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K +S+ ++ + N A + N ISAL LGY +A A Sbjct: 121 ASRIILELKDK-LSMEDMID---AAYNDSVAVQNAAGDVRTNVISALTALGYSGVEAGRA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V D+ Q+++ ALR Sbjct: 177 VSRVDGSAD--MDEEQLLKAALR 197 >gi|254518551|ref|ZP_05130607.1| holliday junction DNA helicase motor protein [Clostridium sp. 7_2_43FAA] gi|226912300|gb|EEH97501.1| holliday junction DNA helicase motor protein [Clostridium sp. 7_2_43FAA] Length = 201 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 I+G +G+ DY++I+ G+ Y I+ T+S + KI + L++E +R+D + L+GF Sbjct: 5 IRGKYKGINRDYIIIENNGIGYKIFTSGATMSSMPKIDEEVKLYLEQIVREDFLGLYGFD 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + + F LL S+ GVGA+ A+ +LS L +I++ + K + + PGI K A RI Sbjct: 65 AREELEMFKLLLSINGVGAKAALSLLSISRINNLRYAIMMGDEKHLCKAPGIGKKTAGRI 124 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAIN 162 + ELK K + ++D+S V + MP+ A N Sbjct: 125 ILELKDK------IKKEDISEVIEGSGEFEDLMPNNASN 157 >gi|323142288|ref|ZP_08077120.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT 12067] gi|322413172|gb|EFY04059.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT 12067] Length = 200 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQG-VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG +KG ++ L D +I+ G V Y ++ P L+ L + G L + T +R+D I Sbjct: 1 MIGSLKGTVDSLGIDNCIIETAGGVGYRVFMPAAQLAQLTQ-GASVRLHIHTAVREDAIV 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFLS F LL ++ GVG ++A+G+LS + ++ ++ KV+ ++PGI K Sbjct: 60 LYGFLSREYYDLFELLLTISGVGPKMALGILSAVKPDAFYLAVQSRDIKVLTKLPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQAT 178 A R++ ELK K + V + + + + S A+ AI AL +LGY + Sbjct: 120 TAERLLLELKDK---VGPVAAESADSFGE---AVAAGGSGAVAEAIEALASLGYSNSEIM 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 + + E ++ +I++ ALR Sbjct: 174 PVIKKIEGAETKTSE--EILKQALR 196 >gi|295095544|emb|CBK84634.1| Holliday junction DNA helicase subunit RuvA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 231 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G I VL++V GV Y ++ P+ L + G +F + +R+D L Sbjct: 28 VIGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGKEAVVFTQFVVREDAQLL 87 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 88 YGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKT 147 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L + V S A++ALV LGY +A+ Sbjct: 148 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPASDDDAEQEAVAALVALGYKPQEASR 207 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K + A +IR ALRA Sbjct: 208 MVSKIAKPD---ASSETLIREALRA 229 >gi|297579365|ref|ZP_06941293.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385] gi|297536959|gb|EFH75792.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385] Length = 204 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A + S P A N A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGVGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|268589737|ref|ZP_06123958.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131] gi|291314889|gb|EFE55342.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131] Length = 205 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--QAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N + + +M A +AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPSVNSKVPNMADIEAEAAAALIALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K + +D +IR ALRA Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203 >gi|157161330|ref|YP_001458648.1| Holliday junction DNA helicase RuvA [Escherichia coli HS] gi|170019794|ref|YP_001724748.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739] gi|188494515|ref|ZP_03001785.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638] gi|193069860|ref|ZP_03050809.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019] gi|167012659|sp|A8A161|RUVA_ECOHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045753|sp|B1J0M7|RUVA_ECOLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157067010|gb|ABV06265.1| Holliday junction DNA helicase RuvA [Escherichia coli HS] gi|169754722|gb|ACA77421.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739] gi|188489714|gb|EDU64817.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638] gi|192956760|gb|EDV87214.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019] gi|309702085|emb|CBJ01399.1| holliday junction ATP-dependent DNA helicase [Escherichia coli ETEC H10407] gi|323937119|gb|EGB33399.1| Holliday junction DNA helicase RuvA [Escherichia coli E1520] Length = 203 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 13/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+K + L D+ + + S S A N A++ALV LGY Sbjct: 121 AERLIVEMKDRFKGLHG----DLFTPAADLV-LTSPASPATNDAEQEAVAALVALGYKPQ 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ V + + + A +IR ALRA Sbjct: 176 EASRMVSKIARPD---ASSETLIREALRA 201 >gi|292488538|ref|YP_003531422.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia amylovora CFBP1430] gi|292899714|ref|YP_003539083.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946] gi|291199562|emb|CBJ46679.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946] gi|291553969|emb|CBA21014.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia amylovora CFBP1430] gi|312172681|emb|CBX80937.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia amylovora ATCC BAA-2158] Length = 204 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y + P+ L I +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPDIRQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + ++PG+ K Sbjct: 61 FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+K + + D+ + A MP N A++AL LGY Sbjct: 121 AERLVVEMKDRFKGMHG----DLFASDAPFALTSEMPKETGNDAESEAVAALTALGYKPQ 176 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ + + K + AD +IR ALRA Sbjct: 177 EASRMIGKIGKPD---ADCETLIREALRA 202 >gi|194017234|ref|ZP_03055846.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061] gi|194011102|gb|EDW20672.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061] Length = 201 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + YV+I+ GV Y +Y P + +I T++ ++++D L Sbjct: 1 MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPN---PFIYQINKHETIYTYHYIKEDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++ +I ++ + + PG+ K Sbjct: 58 YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAIN-AISALVNLGYGQDQAT 178 A +I+ +LKGK L+ VV + + + + HI A++ A AL LGYG D+ Sbjct: 118 ARQIILDLKGK---LADVVPEMIGNLFNHEDHIQVETQQTALDEAFEALSVLGYG-DREI 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V+ +LK+EKN+ D Q ++ AL+ + Sbjct: 174 KKVLPLLKEEKNLTTD-QYVKKALQKM 199 >gi|327314021|ref|YP_004329458.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289] gi|326944672|gb|AEA20557.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289] Length = 205 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 112/217 (51%), Gaps = 25/217 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI I+G + L +++ QGV Y + + T S + G+ L+V T R Sbjct: 1 MIEYIRGELADLTPALAVVEAQGVGYALNISLNTYSAIQGRTP--VKLYVHEAIMTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF S +R + LL +V GVGA +A +LS +T EL I + K++ + G Sbjct: 59 DSYTLYGFASRQERSLYRLLITVSGVGANIARMILSSLTPAELCNVIANGDEKMLKTVRG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168 I ++ A RI+ +LK K ++Q ++ ++ H+ S P + A+N A+SAL Sbjct: 119 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPGTPAVNTAIKDEAVSALT 168 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + VVS+L + ++ + Q+++LAL+ I Sbjct: 169 MLGFSPAPSAKVVVSILTDQPDLPVE-QVVKLALKMI 204 >gi|254292161|ref|ZP_04962932.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226] gi|150421924|gb|EDN13900.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226] Length = 204 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A + S P A N A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAADLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ A+ V K + ++IR AL+++ Sbjct: 178 ASKALSQVAKAGMS---SEELIREALKSM 203 >gi|325661158|ref|ZP_08149785.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 4_1_37FAA] gi|325472665|gb|EGC75876.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 4_1_37FAA] Length = 200 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 106/188 (56%), Gaps = 13/188 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + E+ V+++VQG+ Y I+ P + ++ L IG + ++R+D ++L Sbjct: 1 MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F LL V G+G + + +LS++T +L +++ + K I+ PGI K Sbjct: 61 FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A +++ ELK K +++ V+ + + + S+PS + A+ ALV LGYG + Sbjct: 121 AEKLIIELKDK-LNIDDVLTK--------EEEVMSVPSGGADMQSEAVQALVALGYGSAE 171 Query: 177 ATTAVVSV 184 + AV V Sbjct: 172 SLKAVKKV 179 >gi|302345821|ref|YP_003814174.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC 25845] gi|302149753|gb|ADK96015.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC 25845] Length = 205 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 25/217 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI I+G + L +++ GV Y + + T S + GK L+V T R Sbjct: 1 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAIQGKTA--VKLYVHEAIMTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + G Sbjct: 59 DNYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168 I ++ A RI+ +LK K ++Q ++ ++ H+ S P + A+N A+SAL Sbjct: 119 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPNTPAVNAAIKDEAVSALT 168 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + VVS+L ++ ++ + Q+++LAL+ I Sbjct: 169 MLGFSPAPSAKVVVSILTEQPDLPVE-QVVKLALKMI 204 >gi|331085084|ref|ZP_08334171.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408784|gb|EGG88249.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 200 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 106/188 (56%), Gaps = 13/188 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + E+ V+++VQG+ Y I+ P + ++ L IG + ++R+D ++L Sbjct: 1 MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F LL V G+G + + +LS++T +L +++ + K I+ PGI K Sbjct: 61 FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A +++ ELK K +++ V+ + + + S+PS + A+ ALV LGYG + Sbjct: 121 AEKLIIELKDK-LNIDDVLTK--------EEEVMSVPSGGADMQSEAVQALVALGYGSAE 171 Query: 177 ATTAVVSV 184 + AV V Sbjct: 172 SLKAVKKV 179 >gi|304413290|ref|ZP_07394763.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus Regiella insecticola LSR1] gi|304284133|gb|EFL92526.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus Regiella insecticola LSR1] Length = 202 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y I PI L + G +F + +R++ L Sbjct: 1 MIGRLRGIILEKQPPQVLLETHGVGYEIQLPISCFYQLPEAGQEAIIFTQFVVREEAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAPQFVHAVEQEEISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L+ + + S A + + + A+SAL+ LGY +A+ Sbjct: 121 AERLVVEMKDRIKGLNGDLFTN-STAAPLSASLLTTVNNEAEAVSALITLGYKPQEASRL 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + E D +IR ALRA Sbjct: 180 INKIATAE---MDCETLIREALRA 200 >gi|256823080|ref|YP_003147043.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069] gi|256796619|gb|ACV27275.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069] Length = 205 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 8/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG+I+G + +V+I+ GV Y I P+ T L + G+ L + ++ Sbjct: 1 MIGRIRGTLIEKIPPFVIIETTAGVGYEIQVPMTTFYQLPEEGEQAILSTHMSIAENLHA 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+S DR F L V GVG ++A+ +LS + E V ++ N + ++PG+ K Sbjct: 61 LYGFISTKDRALFRELIKVNGVGPKLALAILSGMETDEFVMTVHDGNVDRLVKLPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQA 177 A R++ E+ + S + + +A I + + A+SAL+ LGY A Sbjct: 121 TAERLLVEMSDRLKDWS--ISAGLPSSQPSEASIAQTAKTDASQEAVSALIALGYKPQIA 178 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207 + AV V + A ++IRLALR ++ Sbjct: 179 SKAVTQVAHDD---AKSEELIRLALRQLAS 205 >gi|46912737|emb|CAG19527.1| Putative holliday junction DNA helicase RuvA [Photobacterium profundum SS9] Length = 228 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 14/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD---FCTLFVETHMRQDQ 57 +IG++ G I VLIDV G+ Y + P+ L ++G CT F+ +R+D Sbjct: 23 VIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFI---VREDA 79 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF +R+ F + GVG ++ + +LS +TA++ V S+ ++ + +IPG+ Sbjct: 80 QLLYGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVG 139 Query: 118 MKIASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 K A R++ E LKG D + N E S + A+SAL+ LGY Sbjct: 140 KKTAERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARA-EDEAVSALIALGYK 198 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA V V+K E + IIR ALR++ Sbjct: 199 ALQAAKVVSQVVKPEMS---SENIIREALRSM 227 >gi|297616928|ref|YP_003702087.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus DSM 12680] gi|297144765|gb|ADI01522.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus DSM 12680] Length = 201 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D V +DV GV + + P R L+ + IG L+ +++ R+ Sbjct: 1 MIAFLRGILVDTGTDCVYLDVNGVGFEVTVPPRVLNRVTCIGQEVFLYTYLQTLENEFRI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +RQ F L S+ G+GA+ +G++S +T EL +++ Q+ K + +PGI K Sbjct: 61 YGFLDEDERQLFRTLLSIPGLGAKTCLGIVSSMTTEELYRAVLAQDEKSLTSVPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ EL+ K + D+ + ++ S + ISAL LG+ Sbjct: 121 AQRLIFELQNKW------PKTDLIATTASE----NLRSSWTDTISALETLGF 162 >gi|317131997|ref|YP_004091311.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense YUAN-3] gi|315469976|gb|ADU26580.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense YUAN-3] Length = 199 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 98/216 (45%), Gaps = 35/216 (16%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +I GV + TL L G+ L+ ++R+D + L Sbjct: 1 MIYSLKGTLTHTGPGMAVISCGGVGFKCLTTANTLGALPPPGEEAFLYTHLNVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F +L V GVG + A+ +LS T + S+ ++K + + PGI KI Sbjct: 61 YGFGSEEELHCFRMLIGVSGVGPKAALSILSGTTPAQFAFSVASGDAKALTRAPGIGSKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-----CSMPSF----AINAISALVNLG 171 A RI+ ELK K +N EQA +P+ A A+SALV LG Sbjct: 121 AQRIVLELKDK--------------INGEQAAANFTGGTPVPAVSGGSAAEAVSALVVLG 166 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQ----IIRLALR 203 Y +A AV N D +Q IIR ALR Sbjct: 167 YSGTEAQGAV--------NRCDPAQSVEDIIRQALR 194 >gi|295099824|emb|CBK88913.1| Holliday junction DNA helicase subunit RuvA [Eubacterium cylindroides T2-87] Length = 193 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D V++DV GV Y ++ + + KIGD L+ H+R+D + L Sbjct: 1 MIAFVSGIVRLIRTDSVVLDVHGVGYEVFI---SNALTQKIGDELFLYTYQHVREDAMLL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D + FM L +V+G+G + A +L+ ++++++I + K++ +PGI K Sbjct: 58 YGFIKQEDYEVFMRLINVKGIGPKTAQTMLAVCPGSKMIQAIEEDDVKLLKSLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK +S+ + + + V KE ALV LGY +Q Sbjct: 118 ASQIVLDLKGKFVSVETKEETISNPVWKETQE-------------ALVALGYKVNQ---- 160 Query: 181 VVSVLKKE---KNIADDSQIIRLAL 202 +S ++KE K + ++++R+AL Sbjct: 161 -LSGVRKELANKTDLNVNEMLRMAL 184 >gi|313239182|emb|CBY14141.1| unnamed protein product [Oikopleura dioica] Length = 202 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V+++V GV Y + P+ + L IG L +R+D L Sbjct: 1 MITFLHGRLVDALPTQVVVEVHGVGYEVLIPLSSFDRLPGIGQEIHLLTHLTVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF++ +R+ F LL +V G+G R+A+ VLS + T ++ + + ++QI G+ K Sbjct: 61 YGFVTGAERELFRLLVHTVTGIGPRIALNVLSGMPPTAFRSAVATGDIRALSQISGVGRK 120 Query: 120 IASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A RI+ ELK G A +L + + ++ H +A+ ALV LG+ Q + Sbjct: 121 TAERIIVELKDKVGSAAALETTGPGRTAGPTEKAVH---------DAVLALVALGFKQPE 171 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 A V + A Q++R L+ Sbjct: 172 AFETVRAAQAALGPQATVEQLVRAGLK 198 >gi|170769415|ref|ZP_02903868.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627] gi|170121739|gb|EDS90670.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627] Length = 203 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPATDLVLTSPASPATEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|325105978|ref|YP_004275632.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM 12145] gi|324974826|gb|ADY53810.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM 12145] Length = 194 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 102/194 (52%), Gaps = 19/194 (9%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 Y++++ G+ Y I + T S + K + C L+ H+++D ++GF + +R+ F+ L Sbjct: 16 YIVLEATGIGYHINISLNTFSLV-KDQEKCKLYTWLHVKEDGHTMYGFADEGERRLFLHL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV GVG A +LS I+ E+ ++II +I I GI K A R++ +L+ K Sbjct: 75 ISVNGVGPNTARMMLSSISPIEIEQAIIKGEVGLIKSIKGIGPKTAQRLIIDLQDKLQKS 134 Query: 136 SS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 ++QD + +E+ AISALV LG+ ++ A AV S +KK I Sbjct: 135 GDGTLIAIRQDYTA--REE------------AISALVMLGFAKNNAEKAVDSAVKKSDKI 180 Query: 192 ADDSQIIRLALRAI 205 +II++AL+++ Sbjct: 181 LSVEEIIKIALKSL 194 >gi|332534227|ref|ZP_08410072.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis ANT/505] gi|332036307|gb|EGI72778.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis ANT/505] Length = 205 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 10/194 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L KIG+ ++ +R+D L Sbjct: 1 MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKIGENAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++R F L GVG ++ + +LS ++A + V + ++S + ++PG+ K Sbjct: 61 FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAKQFVSCVNNEDSTSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------NAISALVNLGYGQ 174 A R++ E+K + + D+ + A I M I +A+SAL+ LGY Sbjct: 121 AERLVLEMKDRLKDWGN----DLFTPFSDSAVIEPMSDATIANNAADDAVSALLALGYKL 176 Query: 175 DQATTAVVSVLKKE 188 QA AV S+ K + Sbjct: 177 PQAQKAVKSISKPD 190 >gi|260768875|ref|ZP_05877809.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972] gi|260616905|gb|EEX42090.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972] Length = 205 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 106/210 (50%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IGD ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-----AINAISALVNLGYGQD 175 A R++ E+K + L D+ + A + +M + A+SAL+ LGY Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPLDAMGAIHDQNAEEEAVSALLALGYKPA 177 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ AV V + + Q+IR AL+++ Sbjct: 178 QASKAVSQVAQPDMT---SEQLIREALKSM 204 >gi|256832601|ref|YP_003161328.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM 20603] gi|256686132|gb|ACV09025.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM 20603] Length = 205 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 9/181 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G ++ + D ++ V GV Y++Y TL+ L + G TL+ +R+D + L Sbjct: 1 MIAQLTGIVQKIRLDSAILTVHGVGYLVYATPATLATL-REGQDATLWTSLVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F +Q+V GVG R+A+ +L+ A L +++ + K + ++PGI K+ Sbjct: 60 FGFTDFDERDVFETVQTVSGVGPRLALAMLAIHPAQALRTAVVHADIKALTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + S Q + + A + I AL++LG+ QA A Sbjct: 120 AQRIVLELSNRMTPPQSETTQTPTTPTEHDA--------SEQVIDALMSLGWNTKQAENA 171 Query: 181 V 181 V Sbjct: 172 V 172 >gi|332298112|ref|YP_004440034.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema brennaborense DSM 12168] gi|332181215|gb|AEE16903.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema brennaborense DSM 12168] Length = 205 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 12/176 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + ++ G+ + I P TL L +G+ ++ + R+D ++L Sbjct: 1 MFNSLYGTITAKLPQTIYLETDGIEWDIAVPDTTLDTLPPVGERARVYTWLYHREDAVKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F+ L V GVGA+ A+ ++S I +LVE++ ++ + ++PG+ K Sbjct: 61 FGFATAADRLLFLDLLKVDGVGAKGALKIMSGIAPRQLVEALDSEDLSQLERLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQ 174 A ++M LKGK ++LS+ + + + PS A + I+AL ++GY + Sbjct: 121 AQKMMLTLKGK-LALSA---------DSGRGSVQRSPSAAKWQDVITALADMGYDK 166 >gi|255291934|dbj|BAH90422.1| Holliday junction DNA helicase RuvA [uncultured bacterium] Length = 190 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 31/213 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + V+ID GV Y + P+ + L +G TL +R+D L Sbjct: 1 MIGHLRGQLAARNPPEVVIDCGGVGYEVLVPMSSFYNLPALGQEVTLLTHLVVREDAQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V GVG R A+ +LS ++A EL +++ Q S + ++PGI K Sbjct: 61 YGFGSAAERATFRELIKVSGVGPRTALALLSGMSAAELAQAVSAQESGRLTKVPGIGKKT 120 Query: 121 ASRIMTELK-------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ ELK G + +S Q D+ + AL+ LGY Sbjct: 121 AERLLLELKGKLGADLGPQAAPASDAQGDI--------------------LQALLALGY- 159 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 D+ A + L ++ + S+ I+LAL+A++ Sbjct: 160 NDREAAAALKALPQDVGV---SEGIKLALKALA 189 >gi|194433948|ref|ZP_03066220.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012] gi|194417820|gb|EDX33917.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012] gi|332095232|gb|EGJ00259.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 155-74] Length = 203 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYVLPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|71275803|ref|ZP_00652087.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon] gi|71900402|ref|ZP_00682535.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1] gi|170730217|ref|YP_001775650.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M12] gi|229560142|sp|B0U2E1|RUVA_XYLFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71163381|gb|EAO13099.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon] gi|71729834|gb|EAO31932.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1] gi|167965010|gb|ACA12020.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa M12] Length = 194 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L +G LF + D L Sbjct: 1 MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R+ F LQ V G+G ++A+ VLS ++ I + + IPGI K Sbjct: 61 YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A ++ +S K S A AL LGY +A Sbjct: 121 AERMLVELRDRAADFNN----GISTSGKLNLDTVS------EAALALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + ++A +I+ AL+A C Sbjct: 171 ARDAGTESDDVA---TVIKKALQAALC 194 >gi|262394694|ref|YP_003286548.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25] gi|262338288|gb|ACY52083.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25] Length = 203 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 25/216 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TAT+ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 A R++ E+K + + ++ + N E+ AISAL+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEE-----------EAISALLA 169 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LGY QA+ V + K + + Q+IR AL+++ Sbjct: 170 LGYKPTQASKVVSQIAKPDMS---SEQMIREALKSM 202 >gi|254482531|ref|ZP_05095770.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2148] gi|214037222|gb|EEB77890.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2148] Length = 204 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+GN+ +L++V GV Y + P+ TL L ++G +L +R+D L Sbjct: 1 MIGRIRGNLVHKQPPVILVEVGGVGYELQVPMTTLFQLPELGAEVSLVTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + DR F L V GVG ++A+ +LS + + + + + +PG+ K Sbjct: 61 YGFAQERDRALFRQLIKVSGVGPKLALTILSGMDSASFARCVQRDDISSLVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + Q D + A + +A AL+ LGY +A Sbjct: 121 AERLLVEMRDKLKDW--LGQLDGELPSSGPAQSAAPVDRVADAEGALIALGYKPAEAARM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + +I + +IR AL+++ Sbjct: 179 VAAV--NDDSIENSEDLIRRALKSM 201 >gi|311279238|ref|YP_003941469.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1] gi|308748433|gb|ADO48185.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1] Length = 203 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPDQGKEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 FGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAAQFVNAVEREDPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAADDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + + N +IR ALRA Sbjct: 181 ISKIARPDAN---SETLIREALRA 201 >gi|329938965|ref|ZP_08288339.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus M045] gi|329301850|gb|EGG45743.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus M045] Length = 201 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 20/212 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDTAVLEVGGVGMAVQCTPNTLSTL-RLGRPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADEDERQVFELLQTASGVGPRLAQAMLAVHSPDALRRAVSTGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ ELK G+ + + V ++Q H +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGEPLG-APAVGAPAGQGWRDQLH------------AALIGLGYATREA 166 Query: 178 TTAVVSVLKKEKNIADDSQI---IRLALRAIS 206 AV +V + + Q+ +R AL+ ++ Sbjct: 167 DEAVAAVTPQAEAAEGTPQVGPLLRAALQTLN 198 >gi|294651065|ref|ZP_06728403.1| crossover junction crossover junction ATP-dependent DNA helicase RuvA [Acinetobacter haemolyticus ATCC 19194] gi|292823044|gb|EFF81909.1| crossover junction crossover junction ATP-dependent DNA helicase RuvA [Acinetobacter haemolyticus ATCC 19194] Length = 201 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCIIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ L+ +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A R+M EL+ + ++ S N A I M + + A +AL +LGY +A Sbjct: 120 AERLMIELRDR---FKALAHSTGSTTNAAAAQIQFMTNSPVAEAEAALQSLGYKPAEAQK 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V AD IIR AL+++ Sbjct: 177 AVAAVKADYTESAD---IIRAALKSM 199 >gi|117928551|ref|YP_873102.1| Holliday junction DNA helicase subunit RuvA [Acidothermus cellulolyticus 11B] gi|166229623|sp|A0LUK6|RUVA_ACIC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117649014|gb|ABK53116.1| Holliday junction DNA helicase subunit RuvA [Acidothermus cellulolyticus 11B] Length = 196 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC--LGKIGDFCTLFVETHMRQDQI 58 MI + G + + D V+++V G + T++ +G+ F T V +R+D + Sbjct: 1 MISFVSGRVAAVTPDSVIVEVGGFGVQLLATPATIARARVGERARFATSLV---VREDSL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF D +R F LLQ+ GVG R+A+ +L + T L ++ ++ K +A +PGI Sbjct: 58 TLYGFADDDERTVFELLQTASGVGPRLALAMLGVHSPTALRAAVATEDVKALALVPGIGR 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A RI+ ELK + + S+ + S ++ H + L+NLGY QA Sbjct: 118 KTAQRIILELKDRLGTPSTAAAESTSGW-RDAVH------------AGLLNLGYTARQAD 164 Query: 179 TAVVSVLKKEKNIA--DDSQIIRLAL 202 A+ ++ + + A D + +RLAL Sbjct: 165 EAIAAIAGELDDSAAVDTATALRLAL 190 >gi|323698439|ref|ZP_08110351.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. ND132] gi|323458371|gb|EGB14236.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans ND132] Length = 206 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G + E VL+ GV Y + P L+ L G LFV T + + I Sbjct: 1 MIGYLLGELLSADEKGLVLLTPGGVGYEVAAPTSVLAKLPGRGQEVRLFVHTQVGEKAID 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL+ D F L S+ +G + AM +LS A L E ++ ++ +PGI K Sbjct: 61 LFGFLTADDLDLFRTLISLDKLGPKKAMAILSMFDAAHLREIAFREDVNTLSTVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LK K L V + + Q ++A++ L LGYG+D+ Sbjct: 121 SAKQILWNLKDKVDKLKPVTGRGSAADQGRQGPQGEY----LDALAGLKGLGYGEDEIRP 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 ++ +E ++ D + IR L+ I+ Sbjct: 177 MLIETFDEEPDL-DAAGAIRAVLKKINA 203 >gi|198277641|ref|ZP_03210172.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135] gi|198269338|gb|EDY93608.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135] Length = 198 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 9/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG + +V+++ G+ Y I + T S + GK L++ +R+D Sbjct: 1 MIEYIKGELVDATPAWVVVECNGLGYGINVSLNTYSAVQGK--KEVKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 59 LYGFATRQERELFLLLISVSGIGGNTARMILSALSPSELCNVIGSGNDKLLKTVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K I+++ + S + + + A++AL LG+ Q + Sbjct: 119 TAQRIIVELKDK-IAVTGI----ESAATVKSVAVAANTEIYEEAVAALTMLGFAQAPSQK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 +LK+E + A ++I+LAL+ Sbjct: 174 VTAQILKEEPD-APVEKVIKLALK 196 >gi|294786921|ref|ZP_06752175.1| holliday junction DNA helicase RuvA [Parascardovia denticolens F0305] gi|315226557|ref|ZP_07868345.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia denticolens DSM 10105] gi|294485754|gb|EFG33388.1| holliday junction DNA helicase RuvA [Parascardovia denticolens F0305] gi|315120689|gb|EFT83821.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia denticolens DSM 10105] Length = 207 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 7/187 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G++ + D +L+DV G+ + + P R L+ L G L V T + QD I L Sbjct: 1 MIGSLEGDVLSVSADGLLLDVNGIGFSLRMPARDLAGLHAGGHERILTVMT-VSQDAIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS + F LQ V GVG + AM +LS ++ EL ++I + + + PG+ K Sbjct: 60 YGFLSASSKTLFTQLQKVSGVGPKAAMAILSTLSPEELGKAIHDNDVTALTRAPGVGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G ++ SS+ + S V + + S I L +LG+ + A A Sbjct: 120 AQKIILELHG-SVDFSSLDEAPASRVEE-----GGLDSSVDQVIQGLSSLGWQRRDAYQA 173 Query: 181 VVSVLKK 187 + L + Sbjct: 174 TMEALGQ 180 >gi|119472454|ref|ZP_01614553.1| Holliday junction DNA helicase motor protein [Alteromonadales bacterium TW-7] gi|119444891|gb|EAW26190.1| Holliday junction DNA helicase motor protein [Alteromonadales bacterium TW-7] Length = 205 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 18/198 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L K+G+ ++ +R+D L Sbjct: 1 MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGENTIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L GVG ++ + +LS ++A + V + +++ + ++PG+ K Sbjct: 61 FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGK----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 A R++ E+K + S S+V++ + A A +A+SALV L Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPHSDALVANNA--------ADDAVSALVAL 172 Query: 171 GYGQDQATTAVVSVLKKE 188 GY QA AV SV K + Sbjct: 173 GYKLPQAQKAVKSVSKPD 190 >gi|108807436|ref|YP_651352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Antiqua] gi|108811697|ref|YP_647464.1| Holliday junction DNA helicase RuvA [Yersinia pestis Nepal516] gi|145598360|ref|YP_001162436.1| Holliday junction DNA helicase RuvA [Yersinia pestis Pestoides F] gi|21959100|gb|AAM85813.1|AE013828_4 Holliday junction helicase subunit B [Yersinia pestis KIM 10] gi|45436564|gb|AAS62118.1| Holliday junction helicase subunit B [Yersinia pestis biovar Microtus str. 91001] gi|51589648|emb|CAH21278.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP 32953] gi|108775345|gb|ABG17864.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis Nepal516] gi|108779349|gb|ABG13407.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis Antiqua] gi|145210056|gb|ABP39463.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis Pestoides F] Length = 226 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G I VL++ GV Y + P+ L ++G +F + +R+D L Sbjct: 23 VIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 82 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 83 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKT 142 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + ++ A S A SALV LGY +A+ Sbjct: 143 AERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASR 202 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 203 LVSKIAKPG---ADCETLIRDALRA 224 >gi|298373760|ref|ZP_06983749.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274 str. F0058] gi|298274812|gb|EFI16364.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274 str. F0058] Length = 193 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 14/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L + +++V + Y + + T S L GK D ++V +R+D Sbjct: 1 MIDYIKGKIVELSPAHAVVEVSDIGYHVNISLATYSELNGK--DNAKIYVYEAIREDSHT 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF +RQ F+LL SV GVGA A +LS I +L +I N+ ++ + GI K Sbjct: 59 LFGFFGRQERQLFLLLISVSGVGANTARVILSSIAIDDLQSAIQTGNAAILKSVKGIGSK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LK K V + ++S V+K A A++ALV LG+ Q A Sbjct: 119 TAERIIVDLKDK------VSKIEISTVDKPVVDNV----LADEAVAALVMLGFSQMPAQK 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV V++ + + Q+I+ +L+ Sbjct: 169 AVRKVIEINPQLTIE-QVIKQSLK 191 >gi|15838502|ref|NP_299190.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa 9a5c] gi|20455272|sp|Q9PC77|RUVA_XYLFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|9106999|gb|AAF84710.1|AE004010_7 holliday junction binding protein, DNA helicase [Xylella fastidiosa 9a5c] Length = 194 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 73/137 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L +G LF + D L Sbjct: 1 MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFYELPNVGYEVNLFTHYTQKDDSAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R+ F LQ V G+G ++A+ VLS ++ I + + IPGI K Sbjct: 61 YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ EL+ +A ++ Sbjct: 121 AERMLVELRDRAADFNN 137 >gi|328950866|ref|YP_004368201.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus hydrothermalis DSM 14884] gi|328451190|gb|AEB12091.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus hydrothermalis DSM 14884] Length = 201 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 13/199 (6%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 ++G + ED +I G+ + ++CP TL L + G+ L +R+D L+GF Sbjct: 13 LQGRLVDKREDRAVILTGGIGFEVWCPTPTLETL-REGEEVALHTRLVVREDGFTLYGFH 71 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + F LL SV GVG RVA+G+L+ + + L ++ ++K + PG+ ++A RI Sbjct: 72 DPVYLELFDLLTSVSGVGPRVALGMLAALPPSLLGRAVAEGDAKALTAAPGVGKRLAERI 131 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + EL+ K + ++ AH + A AI AL LG+ + Q T VV Sbjct: 132 VLELRHK-------IPAHLTAGGG--AHRAN--PNAHEAIEALAALGFREAQVRT-VVGT 179 Query: 185 LKKEKNIADDSQIIRLALR 203 L + A ++IR ALR Sbjct: 180 LAAQDPEAPVEELIRRALR 198 >gi|326799497|ref|YP_004317316.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium sp. 21] gi|326550261|gb|ADZ78646.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium sp. 21] Length = 194 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 25/197 (12%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 YV++DV GV Y + +L GKI D C L+V +++D L+GF + +R+ F Sbjct: 16 YVVLDVNGVGYHVNI---SLYTFGKIKDCEQCKLYVSFQVKEDAHSLYGFAEEGERRLFN 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-- 131 L SV G+GA +LS IT TE+ +I+ + K I +I GI K A RI+ EL+ K Sbjct: 73 HLLSVSGIGASTGRMILSSITPTEIQTAIVQGDVKQIQRIKGIGPKSAQRIILELQDKLK 132 Query: 132 ---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188 A +L SV Q S+P A++ALV LG+ + QA + + K Sbjct: 133 KEGADTLISVPQHQ------------SVPE---EALTALVMLGFNKAQAEKVLTEIQKNN 177 Query: 189 KNIADDSQIIRLALRAI 205 ++I+ ALR + Sbjct: 178 AAQFTVEELIKEALRRL 194 >gi|288801343|ref|ZP_06406797.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299 str. F0039] gi|288331726|gb|EFC70210.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299 str. F0039] Length = 204 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI IKG++ + +I+ GV Y + + T S + GK + L+V T R Sbjct: 1 MIEYIKGDLAEITPALAVIETAGVGYALNISLTTYSAIQGK--EEVKLYVHEALVTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF + +R+ + LL +V GVGA A +LS I+ EL I + +++ + G Sbjct: 59 DSYTLYGFATKQERELYRLLITVSGVGANTARMILSSISPAELCNVIASGDERMLKSVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I +K A RI+ +LK K LSS + + N A I S + A+ AL LG+ Sbjct: 119 IGLKTAQRIIVDLKDKI--LSSGIATEFKVGNDSNATIDS--AVKDEAVGALTMLGFSPA 174 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V +LK E + + Q+++LAL+ I Sbjct: 175 PSAKVVSEILKNEPTLPVE-QVVKLALKQI 203 >gi|283785600|ref|YP_003365465.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium ICC168] gi|282949054|emb|CBG88657.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium ICC168] Length = 203 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPESGKEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + ++ A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAVEDGEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + + A +IR ALRA Sbjct: 181 VSKVARPD---ASSETLIREALRA 201 >gi|238756969|ref|ZP_04618157.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae ATCC 35236] gi|238704799|gb|EEP97328.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae ATCC 35236] Length = 205 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L +G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPNVGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + + ++ + I A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALR+ Sbjct: 181 RLVSKIAKPG---ADCETLIRDALRS 203 >gi|120434550|ref|YP_860244.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella forsetii KT0803] gi|166230555|sp|A0LXS4|RUVA_GRAFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117576700|emb|CAL65169.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella forsetii KT0803] Length = 193 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 20/209 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI +KG + YV+I+ G+ Y I + T S I D + V TH+ ++D Sbjct: 1 MIHHLKGQLIEKNPTYVVIECNGIGYYINISLHTFSL---IPDSEAVSVYTHLQVKEDSH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF +R+ F LL SV GVG A +LS + E+ E+I ++ I + GI Sbjct: 58 TLYGFAEKSEREIFRLLISVSGVGTSTARMMLSSLQPREVTEAIASEDVATIQSVKGIGA 117 Query: 119 KIASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ +LK K + + V S NKE+ A+SAL LGY + Q Sbjct: 118 KTAQRVILDLKDKVLKVLGDDEVFVSQSNTNKEE------------ALSALEILGYNRRQ 165 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V +LK++ +S II++AL+ + Sbjct: 166 AGKVVEKILKEDPESTVES-IIKMALKKL 193 >gi|42527369|ref|NP_972467.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC 35405] gi|81411982|sp|Q73LJ9|RUVA_TREDE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|41817954|gb|AAS12378.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC 35405] Length = 201 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 15/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + G D V ++ G+ + I+ L LG +G ++ + R+DQ+RL Sbjct: 1 MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V+GVG R A+ ++S + ++ L +++ + + + PG+ K Sbjct: 61 FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNSSSLEKALEEGDLDTLQKAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKGK +L+ V + + V+ E I ++AL +G+ + Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCEYEDI----------VTALTEMGFERKSVIVQ 170 Query: 181 VVSVLKKEKNIADD-----SQIIRLALRAIS 206 V + ++ K D ++ R ++ A+S Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201 >gi|330721244|gb|EGG99343.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC2047] Length = 197 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+IKG + + +DVQGV Y + P+ T L + +L+ +R+D L Sbjct: 1 MIGRIKGVLIEKSPPDICVDVQGVGYELQVPMNTFYRLPDVDHPVSLYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + + GVG ++ + +LS I A++ V + + + ++PGI K Sbjct: 61 YGFYEARERELFRAVIKINGVGPKLGLAILSGIEASDFVRVVHNNDVAALTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + +N A A+SAL+ LGY A A Sbjct: 121 AERLVIEMRDKLKDWPEAPGDLQASLNSAAADGTD------EAVSALLALGYKPKDAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S+ + + ++IR AL++++ Sbjct: 175 IKSIAVEGMS---SQELIRQALKSMA 197 >gi|157693178|ref|YP_001487640.1| Holliday junction DNA helicase RuvA [Bacillus pumilus SAFR-032] gi|167012657|sp|A8FFR3|RUVA_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157681936|gb|ABV63080.1| crossover junction endoribonuclease subunit A [Bacillus pumilus SAFR-032] Length = 201 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + YV+I+ GV Y +Y P + + K T++ ++++D L Sbjct: 1 MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINKQ---ETIYTYHYIKEDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++ +I ++ + + PG+ K Sbjct: 58 YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAIN-AISALVNLGYGQDQAT 178 A +I+ +LKGK L+ VV + + + + HI A++ A+ AL LGYG D+ Sbjct: 118 ARQIILDLKGK---LADVVPEMIGNLFNHEDHIQVETQQTALDEALEALSVLGYG-DREI 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+EKN+ D Q ++ AL+ + Sbjct: 174 KKVYPLLKEEKNLTTD-QYVKKALQKM 199 >gi|170726918|ref|YP_001760944.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908] gi|229560127|sp|B1KGY0|RUVA_SHEWM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169812265|gb|ACA86849.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908] Length = 205 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++V G+ Y + P+ + L + ++ +R+D L Sbjct: 1 MIGRLRGVLVEKQAPEILLEVAGLGYEVQMPLTSFYELPDLNQEAQIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++ + +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E++ K L S+++ + P+ +N AI+AL++LGY Sbjct: 121 AERLLVEMRDK---LKSLLETSAGSEREFMLKSNYTPAPVVNTAEEDAIAALLSLGYKPA 177 Query: 176 QATTAVVSVLKK 187 QA+ AV + K+ Sbjct: 178 QASKAVSAAFKE 189 >gi|259908219|ref|YP_002648575.1| Holliday junction DNA helicase RuvA [Erwinia pyrifoliae Ep1/96] gi|224963841|emb|CAX55343.1| Holliday junction ATP-dependent DNA helicase [Erwinia pyrifoliae Ep1/96] gi|283478149|emb|CAY74065.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia pyrifoliae DSM 12163] gi|310767866|gb|ADP12816.1| Holliday junction DNA helicase RuvA [Erwinia sp. Ejp617] Length = 204 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y + P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPELQQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + ++PG+ K Sbjct: 61 FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+K + + D+ + A M N A++AL+ LGY Sbjct: 121 AERLVVEMKDRFKGMHG----DLFASDAPFALTSEMTKETGNDAESEAVAALIALGYKPQ 176 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ +V K K AD +IR ALRA Sbjct: 177 EASRMIV---KTGKPDADCETLIREALRA 202 >gi|91216982|ref|ZP_01253945.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis ATCC 700755] gi|91184853|gb|EAS71233.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis ATCC 700755] Length = 193 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++++D G+ Y + + T S L K + T++ +++D L Sbjct: 1 MITQLRGRLLEKNPTHIVVDCNGIGYEVNISLHTFSRL-KGEEQITIYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F L SV G+GA A +LS +T ++VE+I ++S I I GI K Sbjct: 60 YGFMEKAERLVFRQLLSVSGIGANTARMMLSSLTPEQVVEAISTEDSDTIQSIKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A R++ +LK K S ++E + I + PS + A+SAL LGY + Q+ Sbjct: 120 AQRVILDLKDKIRS------------SEEYSEIVNTPSNSNKEEALSALETLGYTRKQSG 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + + + A+ II+LAL+ + Sbjct: 168 KIISKICNNNPD-ANVEDIIKLALKNL 193 >gi|301645623|ref|ZP_07245552.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1] gi|301076155|gb|EFK90961.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1] Length = 203 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSESLIREALRA 201 >gi|150390102|ref|YP_001320151.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens QYMF] gi|167012654|sp|A6TQM4|RUVA_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149949964|gb|ABR48492.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens QYMF] Length = 194 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 D ++++V G+ Y I I + S + KIG TLF +R+D+ L+GF+ + F Sbjct: 15 DKIIVEVNGIGYRINSSINSASQV-KIGQVSTLFTHFVLREDEAHLYGFVDKEELAMFKK 73 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L SV +G +VA G+LS T L I+ +++ IA+ PG+ K A R++ ELK K Sbjct: 74 LISVSKIGPKVAAGILSTYTPQRLGAYIVSNDAQAIAKSPGVGKKTAERMILELKDKID- 132 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 S V+ D + N E + + + AL+ LGY + + A +V Sbjct: 133 -DSQVEYDQNFFNHENKNNNEV-------VDALMALGYTKHEGEQAASAV 174 >gi|160871606|ref|ZP_02061738.1| holliday junction DNA helicase RuvA [Rickettsiella grylli] gi|159120405|gb|EDP45743.1| holliday junction DNA helicase RuvA [Rickettsiella grylli] Length = 199 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI +++G + +L++V Y I + T L G+ L+ + +R+D Sbjct: 1 MINRLRGILVEKQPPILLVEVANAFTYEIQASMHTFYQLPHCGEKVFLYTQFIVREDGHF 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F L V GVG +VA+G+LS+I TE V + QN + +PGI K Sbjct: 61 LYGFSTPEERFLFTQLLKVSGVGPKVALGILSKIEVTEFVSCVEQQNVNSLQAVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ + +LS ++K I S+ +AI+AL+ LGY +A+ Sbjct: 121 TAERLIIEMRDRLRNLS---HNQPEILDKNT--IQSLKHIQQDAIAALMALGYKNQEASR 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV+ + K+ +++ ++ +IR AL I+ Sbjct: 176 AVLRI--KDASLSLEA-LIRHALNTIN 199 >gi|300951483|ref|ZP_07165318.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1] gi|300956626|ref|ZP_07168905.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1] gi|300316608|gb|EFJ66392.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1] gi|300449233|gb|EFK12853.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1] Length = 203 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPTADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|191168085|ref|ZP_03029884.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A] gi|256017935|ref|ZP_05431800.1| Holliday junction DNA helicase RuvA [Shigella sp. D9] gi|260855801|ref|YP_003229692.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O26:H11 str. 11368] gi|260868396|ref|YP_003234798.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O111:H- str. 11128] gi|300816247|ref|ZP_07096469.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1] gi|300924950|ref|ZP_07140877.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1] gi|301327650|ref|ZP_07220858.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1] gi|307314227|ref|ZP_07593837.1| Holliday junction DNA helicase RuvA [Escherichia coli W] gi|309794242|ref|ZP_07688666.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7] gi|332278969|ref|ZP_08391382.1| holliday junction helicase subunit B [Shigella sp. D9] gi|190901883|gb|EDV61633.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A] gi|257754450|dbj|BAI25952.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O26:H11 str. 11368] gi|257764752|dbj|BAI36247.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O111:H- str. 11128] gi|300418886|gb|EFK02197.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1] gi|300530937|gb|EFK51999.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1] gi|300845798|gb|EFK73558.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1] gi|306906196|gb|EFN36714.1| Holliday junction DNA helicase RuvA [Escherichia coli W] gi|308122147|gb|EFO59409.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7] gi|315061167|gb|ADT75494.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli W] gi|320198055|gb|EFW72663.1| Holliday junction DNA helicase RuvA [Escherichia coli EC4100B] gi|323152650|gb|EFZ38926.1| holliday junction DNA helicase RuvA [Escherichia coli EPECa14] gi|323180658|gb|EFZ66203.1| holliday junction DNA helicase RuvA [Escherichia coli 1180] gi|323378256|gb|ADX50524.1| Holliday junction DNA helicase RuvA [Escherichia coli KO11] gi|324113597|gb|EGC07572.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii B253] gi|324118921|gb|EGC12810.1| Holliday junction DNA helicase RuvA [Escherichia coli E1167] gi|332101321|gb|EGJ04667.1| holliday junction helicase subunit B [Shigella sp. D9] Length = 203 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|317048520|ref|YP_004116168.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b] gi|316950137|gb|ADU69612.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b] Length = 204 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VLI+ GV Y ++ P+ L ++ +F + +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLIEAHGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + V+ ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAVLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-------AISALVNLGYG 173 A R++ E+K + + + A + PS A A++ALV LGY Sbjct: 121 AERLVVEMKDRFKGMHG------DLFGGDNAFTLTTPSAAPENNDAEAEAVAALVALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ V + + + AD +IR ALRA Sbjct: 175 PQEASRMVSKIGRPD---ADCETLIREALRA 202 >gi|227499581|ref|ZP_03929688.1| crossover junction endoribonuclease subunit A [Anaerococcus tetradius ATCC 35098] gi|227218340|gb|EEI83594.1| crossover junction endoribonuclease subunit A [Anaerococcus tetradius ATCC 35098] Length = 195 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 17/190 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G++ + E+ +I+ + Y+IY + TLS L +I ++ +R+D I L Sbjct: 1 MISYIIGHVRNIDEESFIIENNNIGYLIYSSLATLSNL-EINSEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F LL SV +G + AMG+LS I+ E+ +++ + + GI K Sbjct: 60 FGFFTKDELEMFSLLTSVSTIGPKTAMGILSSISVNEIKTAVVNNDIDKLTLAKGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ASRI+ EL K +S V ++QD +N++ F + A AL+NLGY Q Sbjct: 120 ASRIILELVDKVKKMSFVPVENIKQD-DMLNED---------FEV-AKEALLNLGY-QKN 167 Query: 177 ATTAVVSVLK 186 V+S LK Sbjct: 168 DVDRVLSELK 177 >gi|288924630|ref|ZP_06418567.1| holliday junction DNA helicase RuvA [Prevotella buccae D17] gi|315607515|ref|ZP_07882510.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella buccae ATCC 33574] gi|288338417|gb|EFC76766.1| holliday junction DNA helicase RuvA [Prevotella buccae D17] gi|315250698|gb|EFU30692.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella buccae ATCC 33574] Length = 205 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 23/216 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI IKG + L +I+ GV Y + + T + + GK L+V T R Sbjct: 1 MIEYIKGELTELTPALAVIEAAGVGYALNISLNTYTAIQGK--KETKLYVHEALTTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF S +R + LL +V GVGA A +LS ++A EL I N K++ + G Sbjct: 59 DAFTLYGFFSKQERSLYRLLITVSGVGANTARMILSAMSAKELCGVISTGNDKMLKSVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVN 169 I +K A RI+ +LK K ISL + E +PS ++ A+SAL Sbjct: 119 IGLKTAQRIIVDLKDKIISLG---------IADELPASGGLPSMPVDNATRDEAVSALTM 169 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + VV++L+++ ++A + +++ AL+ I Sbjct: 170 LGFSPAPSQKVVVAILQEQPDMAVE-MVVKEALKRI 204 >gi|28198789|ref|NP_779103.1| Holliday junction DNA helicase motor protein [Xylella fastidiosa Temecula1] gi|182681488|ref|YP_001829648.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23] gi|32130012|sp|Q87D02|RUVA_XYLFT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560141|sp|B2I4S9|RUVA_XYLF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28056880|gb|AAO28752.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa Temecula1] gi|182631598|gb|ACB92374.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23] gi|307579942|gb|ADN63911.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 194 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 74/137 (54%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L +G LF + D L Sbjct: 1 MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R+ F LQ V G+G ++A+ +LS ++ I ++ + IPG+ K Sbjct: 61 YGFLSESERRLFRHLQRVSGIGTKIALAILSSVSVDTFAGLIQAGDANALTVIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ EL+ +A ++ Sbjct: 121 AERMLVELRDRAADFNN 137 >gi|325479262|gb|EGC82358.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii ACS-065-V-Col13] Length = 195 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 14/179 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I + ED +I+ + YII+ + TL+ + +I + ++ +R+D I L Sbjct: 1 MISYIIGQIRAINEDNFVIENNSMGYIIFSSLTTLTNI-EINNEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S + + F+ L SV +G + A+G+LS ++ E+ +I+ + + GI K Sbjct: 60 FGFISKDELEMFLHLTSVSTIGPKTALGILSSLSVNEIKNAILNNDINKLTVAKGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ASRI+ EL K ++ V +D+S VN++ F + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMNFVPIEKTEDVSVVNED---------FDV-AKEALLNLGYQKND 168 >gi|312882586|ref|ZP_07742326.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369746|gb|EFP97258.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC BAA-2122] Length = 205 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 110/210 (52%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILVEKQPPELLIEVNGLGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+K + S+ D+ + A +P +++ A+SAL+ LGY Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPYTDAAVADKLPESSVSNAEEEAVSALLALGYKPT 177 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ V V+ + + ++IR AL+++ Sbjct: 178 QASKVVSQVMVEGMS---SEKLIREALKSM 204 >gi|15802274|ref|NP_288298.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 EDL933] gi|15831825|ref|NP_310598.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. Sakai] gi|16129814|ref|NP_416375.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. MG1655] gi|26248127|ref|NP_754167.1| Holliday junction DNA helicase RuvA [Escherichia coli CFT073] gi|82543694|ref|YP_407641.1| Holliday junction DNA helicase RuvA [Shigella boydii Sb227] gi|89108701|ref|AP_002481.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. W3110] gi|91211086|ref|YP_541072.1| Holliday junction DNA helicase RuvA [Escherichia coli UTI89] gi|110641979|ref|YP_669709.1| Holliday junction DNA helicase RuvA [Escherichia coli 536] gi|117624013|ref|YP_852926.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC O1] gi|157159402|ref|YP_001463164.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A] gi|168747889|ref|ZP_02772911.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4113] gi|168757895|ref|ZP_02782902.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4401] gi|168762345|ref|ZP_02787352.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4501] gi|168770844|ref|ZP_02795851.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4486] gi|168776592|ref|ZP_02801599.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4196] gi|168783161|ref|ZP_02808168.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4076] gi|168788281|ref|ZP_02813288.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC869] gi|168801903|ref|ZP_02826910.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC508] gi|170081517|ref|YP_001730837.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. DH10B] gi|170683558|ref|YP_001743383.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5] gi|187730219|ref|YP_001879638.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94] gi|191173018|ref|ZP_03034552.1| Holliday junction DNA helicase RuvA [Escherichia coli F11] gi|193066070|ref|ZP_03047127.1| Holliday junction DNA helicase RuvA [Escherichia coli E22] gi|194429662|ref|ZP_03062180.1| Holliday junction DNA helicase RuvA [Escherichia coli B171] gi|195940293|ref|ZP_03085675.1| Holliday junction DNA helicase motor protein [Escherichia coli O157:H7 str. EC4024] gi|208810719|ref|ZP_03252595.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4206] gi|208816922|ref|ZP_03258042.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4045] gi|209396228|ref|YP_002270944.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4115] gi|209919228|ref|YP_002293312.1| Holliday junction DNA helicase RuvA [Escherichia coli SE11] gi|215487074|ref|YP_002329505.1| Holliday junction DNA helicase RuvA [Escherichia coli O127:H6 str. E2348/69] gi|217328695|ref|ZP_03444776.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. TW14588] gi|218554449|ref|YP_002387362.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI1] gi|218558726|ref|YP_002391639.1| Holliday junction DNA helicase RuvA [Escherichia coli S88] gi|218689799|ref|YP_002398011.1| Holliday junction DNA helicase RuvA [Escherichia coli ED1a] gi|218695427|ref|YP_002403094.1| Holliday junction DNA helicase RuvA [Escherichia coli 55989] gi|218699567|ref|YP_002407196.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI39] gi|218705362|ref|YP_002412881.1| Holliday junction DNA helicase RuvA [Escherichia coli UMN026] gi|227885711|ref|ZP_04003516.1| Holliday junction DNA helicase motor protein [Escherichia coli 83972] gi|237705815|ref|ZP_04536296.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA] gi|238901076|ref|YP_002926872.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli BW2952] gi|254793485|ref|YP_003078322.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. TW14359] gi|256022473|ref|ZP_05436338.1| Holliday junction DNA helicase RuvA [Escherichia sp. 4_1_40B] gi|260844205|ref|YP_003221983.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O103:H2 str. 12009] gi|261227638|ref|ZP_05941919.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. FRIK2000] gi|261258196|ref|ZP_05950729.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. FRIK966] gi|291283043|ref|YP_003499861.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli O55:H7 str. CB9615] gi|293405356|ref|ZP_06649348.1| ruvA [Escherichia coli FVEC1412] gi|293410173|ref|ZP_06653749.1| Holliday junction DNA helicase RuvA [Escherichia coli B354] gi|293415176|ref|ZP_06657819.1| Holliday junction DNA helicase RuvA [Escherichia coli B185] gi|293446248|ref|ZP_06662670.1| Holliday junction DNA helicase RuvA [Escherichia coli B088] gi|298380998|ref|ZP_06990597.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli FVEC1302] gi|300824197|ref|ZP_07104315.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7] gi|300899111|ref|ZP_07117394.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1] gi|300904745|ref|ZP_07122575.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1] gi|300917562|ref|ZP_07134217.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1] gi|300935836|ref|ZP_07150794.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1] gi|300982165|ref|ZP_07175900.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1] gi|300994110|ref|ZP_07180693.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1] gi|301018303|ref|ZP_07182812.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1] gi|301029311|ref|ZP_07192408.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1] gi|301050785|ref|ZP_07197642.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1] gi|301304450|ref|ZP_07210562.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1] gi|306814309|ref|ZP_07448475.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101] gi|307138524|ref|ZP_07497880.1| Holliday junction DNA helicase RuvA [Escherichia coli H736] gi|312967063|ref|ZP_07781281.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75] gi|331642475|ref|ZP_08343610.1| holliday junction DNA helicase RuvA [Escherichia coli H736] gi|331647458|ref|ZP_08348550.1| holliday junction DNA helicase RuvA [Escherichia coli M605] gi|331653270|ref|ZP_08354275.1| holliday junction DNA helicase RuvA [Escherichia coli M718] gi|331657910|ref|ZP_08358872.1| holliday junction DNA helicase RuvA [Escherichia coli TA206] gi|331673391|ref|ZP_08374159.1| holliday junction DNA helicase RuvA [Escherichia coli TA280] gi|331677742|ref|ZP_08378417.1| holliday junction DNA helicase RuvA [Escherichia coli H591] gi|331683367|ref|ZP_08383968.1| holliday junction DNA helicase RuvA [Escherichia coli H299] gi|67472389|sp|P0A809|RUVA_ECOLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67472390|sp|P0A810|RUVA_ECOL6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67472391|sp|P0A811|RUVA_ECO57 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90135806|sp|Q322E5|RUVA_SHIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123343927|sp|Q0TGX1|RUVA_ECOL5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123387921|sp|Q1RAS3|RUVA_ECOUT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230548|sp|A1AC22|RUVA_ECOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167012658|sp|A7ZMY5|RUVA_ECO24 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698730|sp|B5YR06|RUVA_ECO5E RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698731|sp|B6IBU0|RUVA_ECOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725440|sp|B7MBS0|RUVA_ECO45 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725441|sp|B7NS57|RUVA_ECO7I RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725442|sp|B7M2F2|RUVA_ECO8A RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725443|sp|B7NBL2|RUVA_ECOLU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725444|sp|B1LD10|RUVA_ECOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560029|sp|B1XHC9|RUVA_ECODH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560128|sp|B2TWQ2|RUVA_SHIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766959|sp|B7USN8|RUVA_ECO27 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766960|sp|B7L7R4|RUVA_ECO55 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766961|sp|B7MVP7|RUVA_ECO81 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|259495641|sp|C4ZQE5|RUVA_ECOBW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|5107494|pdb|1BDX|A Chain A, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|5107495|pdb|1BDX|B Chain B, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|5107496|pdb|1BDX|C Chain C, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|5107497|pdb|1BDX|D Chain D, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|9955149|pdb|1C7Y|A Chain A, E.Coli Ruva-Holliday Junction Complex gi|157831340|pdb|1HJP|A Chain A, Holliday Junction Binding Protein Ruva From E. Coli gi|12515917|gb|AAG56851.1|AE005408_9 Holliday junction helicase subunit B; branch migration; repair [Escherichia coli O157:H7 str. EDL933] gi|26108530|gb|AAN80732.1|AE016761_307 Holliday junction DNA helicase ruvA [Escherichia coli CFT073] gi|147782|gb|AAA24612.1| ruvA protein (gtg start) [Escherichia coli] gi|1736508|dbj|BAA15672.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K12 substr. W3110] gi|1788168|gb|AAC74931.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. MG1655] gi|13362039|dbj|BAB35994.1| Holliday junction helicase subunit B [Escherichia coli O157:H7 str. Sakai] gi|81245105|gb|ABB65813.1| Holliday junction helicase subunit B [Shigella boydii Sb227] gi|91072660|gb|ABE07541.1| RuvA protein, Holliday junction helicase subunit B [Escherichia coli UTI89] gi|110343571|gb|ABG69808.1| holliday junction DNA helicase RuvA [Escherichia coli 536] gi|115513137|gb|ABJ01212.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC O1] gi|157081432|gb|ABV21140.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A] gi|169889352|gb|ACB03059.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. DH10B] gi|170521276|gb|ACB19454.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5] gi|187427211|gb|ACD06485.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94] gi|187768087|gb|EDU31931.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4196] gi|188017456|gb|EDU55578.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4113] gi|188999499|gb|EDU68485.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4076] gi|189355165|gb|EDU73584.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4401] gi|189360288|gb|EDU78707.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4486] gi|189367348|gb|EDU85764.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4501] gi|189372002|gb|EDU90418.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC869] gi|189376026|gb|EDU94442.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC508] gi|190906729|gb|EDV66334.1| Holliday junction DNA helicase RuvA [Escherichia coli F11] gi|192926307|gb|EDV80944.1| Holliday junction DNA helicase RuvA [Escherichia coli E22] gi|194412304|gb|EDX28608.1| Holliday junction DNA helicase RuvA [Escherichia coli B171] gi|195182923|dbj|BAG66491.1| Holliday junction helicase subunit B [Escherichia coli O111:H-] gi|208725235|gb|EDZ74942.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4206] gi|208731265|gb|EDZ79954.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4045] gi|209157628|gb|ACI35061.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4115] gi|209767468|gb|ACI82046.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767470|gb|ACI82047.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767472|gb|ACI82048.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767474|gb|ACI82049.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767476|gb|ACI82050.1| Holliday junction helicase subunit B [Escherichia coli] gi|209912487|dbj|BAG77561.1| holliday junction helicase subunit RuvA [Escherichia coli SE11] gi|215265146|emb|CAS09534.1| RuvA component of RuvABC resolvasome, regulatory subunit [Escherichia coli O127:H6 str. E2348/69] gi|217318042|gb|EEC26469.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. TW14588] gi|218352159|emb|CAU97898.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli 55989] gi|218361217|emb|CAQ98801.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli IAI1] gi|218365495|emb|CAR03222.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli S88] gi|218369553|emb|CAR17322.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli IAI39] gi|218427363|emb|CAR08163.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli ED1a] gi|218432459|emb|CAR13352.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli UMN026] gi|222033610|emb|CAP76351.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli LF82] gi|226900572|gb|EEH86831.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA] gi|227837284|gb|EEJ47750.1| Holliday junction DNA helicase motor protein [Escherichia coli 83972] gi|238860169|gb|ACR62167.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli BW2952] gi|254592885|gb|ACT72246.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli O157:H7 str. TW14359] gi|257759352|dbj|BAI30849.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O103:H2 str. 12009] gi|260449016|gb|ACX39438.1| Holliday junction DNA helicase RuvA [Escherichia coli DH1] gi|281178931|dbj|BAI55261.1| holliday junction helicase subunit RuvA [Escherichia coli SE15] gi|284921781|emb|CBG34854.1| holliday junction ATP-dependent DNA helicase [Escherichia coli 042] gi|290762916|gb|ADD56877.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli O55:H7 str. CB9615] gi|291323078|gb|EFE62506.1| Holliday junction DNA helicase RuvA [Escherichia coli B088] gi|291427564|gb|EFF00591.1| ruvA [Escherichia coli FVEC1412] gi|291432824|gb|EFF05803.1| Holliday junction DNA helicase RuvA [Escherichia coli B185] gi|291470641|gb|EFF13125.1| Holliday junction DNA helicase RuvA [Escherichia coli B354] gi|294493531|gb|ADE92287.1| Holliday junction DNA helicase RuvA [Escherichia coli IHE3034] gi|298278440|gb|EFI19954.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli FVEC1302] gi|299877737|gb|EFI85948.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1] gi|300297540|gb|EFJ53925.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1] gi|300307321|gb|EFJ61841.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1] gi|300357268|gb|EFJ73138.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1] gi|300399739|gb|EFJ83277.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1] gi|300403329|gb|EFJ86867.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1] gi|300406372|gb|EFJ89910.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1] gi|300415216|gb|EFJ98526.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1] gi|300458948|gb|EFK22441.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1] gi|300523268|gb|EFK44337.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7] gi|300840301|gb|EFK68061.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1] gi|305852468|gb|EFM52919.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101] gi|307553880|gb|ADN46655.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli ABU 83972] gi|307626656|gb|ADN70960.1| Holliday junction DNA helicase RuvA [Escherichia coli UM146] gi|312288527|gb|EFR16429.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75] gi|312946461|gb|ADR27288.1| Holliday junction DNA helicase RuvA [Escherichia coli O83:H1 str. NRG 857C] gi|315136504|dbj|BAJ43663.1| Holliday junction DNA resolvasome [Escherichia coli DH1] gi|315257307|gb|EFU37275.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 85-1] gi|315286570|gb|EFU46005.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 110-3] gi|315290340|gb|EFU49716.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 153-1] gi|315296552|gb|EFU55849.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 16-3] gi|320173573|gb|EFW48768.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae CDC 74-1112] gi|320182601|gb|EFW57490.1| Holliday junction DNA helicase RuvA [Shigella boydii ATCC 9905] gi|320187795|gb|EFW62469.1| Holliday junction DNA helicase RuvA [Shigella flexneri CDC 796-83] gi|320188562|gb|EFW63224.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC1212] gi|320194423|gb|EFW69054.1| Holliday junction DNA helicase RuvA [Escherichia coli WV_060327] gi|320641715|gb|EFX11103.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. G5101] gi|320647075|gb|EFX15908.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str. 493-89] gi|320652358|gb|EFX20656.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str. H 2687] gi|320657959|gb|EFX25721.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658532|gb|EFX26226.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str. USDA 5905] gi|320668430|gb|EFX35257.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. LSU-61] gi|323158654|gb|EFZ44668.1| holliday junction DNA helicase RuvA [Escherichia coli E128010] gi|323174753|gb|EFZ60369.1| holliday junction DNA helicase RuvA [Escherichia coli LT-68] gi|323186868|gb|EFZ72187.1| holliday junction DNA helicase RuvA [Escherichia coli RN587/1] gi|323940471|gb|EGB36662.1| Holliday junction DNA helicase RuvA [Escherichia coli E482] gi|323948253|gb|EGB44241.1| Holliday junction DNA helicase RuvA [Escherichia coli H120] gi|323952363|gb|EGB48236.1| Holliday junction DNA helicase RuvA [Escherichia coli H252] gi|323956492|gb|EGB52234.1| Holliday junction DNA helicase RuvA [Escherichia coli H263] gi|323968281|gb|EGB63688.1| Holliday junction DNA helicase RuvA [Escherichia coli M863] gi|323977955|gb|EGB73041.1| Holliday junction DNA helicase RuvA [Escherichia coli TW10509] gi|324007232|gb|EGB76451.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 57-2] gi|324012870|gb|EGB82089.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 60-1] gi|324018004|gb|EGB87223.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 117-3] gi|325496996|gb|EGC94855.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ECD227] gi|326342241|gb|EGD66022.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. 1044] gi|326343791|gb|EGD67553.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. 1125] gi|327252987|gb|EGE64641.1| holliday junction DNA helicase RuvA [Escherichia coli STEC_7v] gi|330911671|gb|EGH40181.1| holliday junction DNA helicase RuvA [Escherichia coli AA86] gi|331039273|gb|EGI11493.1| holliday junction DNA helicase RuvA [Escherichia coli H736] gi|331043182|gb|EGI15320.1| holliday junction DNA helicase RuvA [Escherichia coli M605] gi|331049368|gb|EGI21440.1| holliday junction DNA helicase RuvA [Escherichia coli M718] gi|331056158|gb|EGI28167.1| holliday junction DNA helicase RuvA [Escherichia coli TA206] gi|331069589|gb|EGI40976.1| holliday junction DNA helicase RuvA [Escherichia coli TA280] gi|331074202|gb|EGI45522.1| holliday junction DNA helicase RuvA [Escherichia coli H591] gi|331079582|gb|EGI50779.1| holliday junction DNA helicase RuvA [Escherichia coli H299] gi|332090038|gb|EGI95138.1| holliday junction DNA helicase RuvA [Shigella boydii 5216-82] gi|332096672|gb|EGJ01663.1| holliday junction DNA helicase RuvA [Shigella boydii 3594-74] gi|332343587|gb|AEE56921.1| holliday junction DNA helicase RuvA [Escherichia coli UMNK88] gi|333003565|gb|EGK23105.1| holliday junction DNA helicase RuvA [Shigella flexneri VA-6] gi|333004714|gb|EGK24237.1| holliday junction DNA helicase RuvA [Shigella flexneri K-272] gi|333018434|gb|EGK37732.1| holliday junction DNA helicase RuvA [Shigella flexneri K-227] Length = 203 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|315180569|gb|ADT87483.1| Holliday junction DNA helicase motor protein [Vibrio furnissii NCTC 11218] Length = 205 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IGD ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-PSFAIN----AISALVNLGYGQD 175 A R++ E+K + L D+ + A + +M S N A+SAL+ LGY Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPATDAAPLDAMGASHDQNAEEEAVSALLALGYKPA 177 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ AV V + + Q+IR AL+++ Sbjct: 178 QASKAVSQVSQPDMT---SEQLIREALKSM 204 >gi|332701178|ref|ZP_08421266.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio africanus str. Walvis Bay] gi|332551327|gb|EGJ48371.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio africanus str. Walvis Bay] Length = 202 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 110/209 (52%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNI-EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + E + +++ GV Y ++ P+ L+ L G + E +R+D Sbjct: 1 MIGYIRGTLLEQTEKSCLVLTAGGVGYELHLPLPALARLPAEGQEVSFHTEQVVREDSQD 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S+ +G + + +LS+ +L + ++ ++ + ++ GI K Sbjct: 61 LYGFETSEERRLFHVLLSIPNLGPKKGLAILSQFHPDDLRQIVLHEDIAALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177 +I+ ELK K S D V ++ A P ++ +A++ L NLGY +++A Sbjct: 121 TGQQILWELKYKLAS------ADAPAVGRKPA----APGRSVLQDALAGLTNLGYSEEEA 170 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + E ++ D +Q++R AL+AI+ Sbjct: 171 RPVLHKLFEAEPDL-DVAQLLREALKAIA 198 >gi|326318908|ref|YP_004236580.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375744|gb|ADX48013.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 190 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G+ L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E L + N QA I + AL+ LGY D+ + Sbjct: 121 AERLLLE---LKGKLGVDIGARPEAANDAQADI----------LQALLALGY-NDREGAS 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L K+ + S+ I+LAL+A++ Sbjct: 167 ALKALPKDVGV---SEGIKLALKALA 189 >gi|262276112|ref|ZP_06053921.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886] gi|262219920|gb|EEY71236.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886] Length = 209 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 17/215 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++V GV Y + P+ L ++G+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEILLEVNGVGYEVSMPMSCFYELPEVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R F + GVG ++ + +LS +TAT+ V+S+ ++ + +IPG+ K Sbjct: 61 YGFNTTVERALFREVIKANGVGPKLGLAILSGMTATQFVDSVEREDVSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGK-----AISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E++ + A L + + N + + + AISAL+ LGY Sbjct: 121 AERLVIEMRDRLKNWHAFDLFTPHADAAVRRANGTETVVAASTDPKDEAISALIALGYKA 180 Query: 175 DQATTAVVSVLKKEKNIADD----SQIIRLALRAI 205 QA V K +A D IIR ALR++ Sbjct: 181 AQAEKVV-------KQVAVDGMKSEAIIRDALRSM 208 >gi|325963419|ref|YP_004241325.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter phenanthrenivorans Sphe3] gi|323469506|gb|ADX73191.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter phenanthrenivorans Sphe3] Length = 214 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +ID+ G + +TLS L + G+ LF +R+D + L Sbjct: 1 MISFLRGTVAHVGLSTAVIDLNGAGMSVNATPQTLSGL-RTGEEGQLFTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R+ F +L SV GVG R+A+ VL+ + + +SK ++PGI K+ Sbjct: 60 FGFASDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDSKTFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK +V Q + + S+ ++A+ +LG+ + A+ + Sbjct: 120 AGRIVLELAGK------LVPQGTAGTAAAPTAAEA--SWKPQVVAAMTSLGWSEKDASAS 171 Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203 + L E ++ + +I+R LR Sbjct: 172 IDKALADEPEVSFRGNVPEILRTTLR 197 >gi|86140746|ref|ZP_01059305.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella blandensis MED217] gi|85832688|gb|EAQ51137.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella blandensis MED217] Length = 193 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 18/208 (8%) Query: 1 MIGKIKGN-IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G IE + D V+I+ GV Y + + T S L + G+ L+ H+++D Sbjct: 1 MITFLRGKLIEKNHTD-VVIECHGVGYFVNISLHTFSLLPE-GESIMLYTYLHIKEDAHT 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F LL SV GVG +A +LS + +++ ++I + K I + GI K Sbjct: 59 LYGFAHKSEREIFKLLISVSGVGTSIARTMLSSLEPSQVKQAIATGDVKTIQGVKGIGAK 118 Query: 120 IASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ +LK K + + + V NKE+ A+SAL LG+ + QA Sbjct: 119 TAQRVILDLKDKILKVYDINEVSPIADNTNKEE------------ALSALETLGFARKQA 166 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 ++++ E A II+LAL+ + Sbjct: 167 EKVCTTIVRDEPQ-ASVETIIKLALKKL 193 >gi|92113970|ref|YP_573898.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter salexigens DSM 3043] gi|91797060|gb|ABE59199.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter salexigens DSM 3043] Length = 206 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 88/178 (49%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + + TL L G+ L +R+D L Sbjct: 3 MIGRLRGTLLEKQPPWIVVDVGGVGYELETSMTTLLALPGPGEEVQLHTHLAVREDAHLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +RQ F L V GVG ++A+ +LS + + ++ + K + ++PG+ K Sbjct: 63 YGFARGDERQLFRALIKVNGVGPKLALAILSGMDQEAFIRCVMEDDIKALTRLPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ + + + + + + P +A SALV LGY +A+ Sbjct: 123 AERLVVEMRDRFPHWQLEQENGLHALELGASPTTAAPDPQADAESALVALGYKPTEAS 180 >gi|325853052|ref|ZP_08171201.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS 18C-A] gi|325484426|gb|EGC87347.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS 18C-A] Length = 222 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 25/217 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI I+G + L +++ GV Y + + T S L GK L+V T R Sbjct: 18 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSALQGKT--TVKLYVHEAIMTGGRD 75 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF S +R + LL +V GVGA A +LS +T EL I + K++ + G Sbjct: 76 DSYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKG 135 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168 I ++ A RI+ +LK K ++Q ++ ++ H+ S P + A++ A+SAL Sbjct: 136 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPGTPAVDTAIKDEAVSALT 185 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + VVS+L + ++ + Q+++LAL+ I Sbjct: 186 MLGFSPAPSAKVVVSILTDQPDLPVE-QVVKLALKMI 221 >gi|238788520|ref|ZP_04632313.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC 33641] gi|238723433|gb|EEQ15080.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC 33641] Length = 194 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 3/188 (1%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 VL++ GV Y + P+ L +G +F + +R+D L+GF +R F L Sbjct: 8 VLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELI 67 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K + L+ Sbjct: 68 KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 127 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + + + A A+SALV LGY +A+ V + K AD Sbjct: 128 GDLFNNTGDIQLPSASQTPDADIEAEAVSALVALGYKPQEASRLVSKIAKPG---ADCET 184 Query: 197 IIRLALRA 204 +IR ALRA Sbjct: 185 LIRDALRA 192 >gi|218961233|ref|YP_001741008.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas acidaminovorans] gi|167729890|emb|CAO80802.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas acidaminovorans] Length = 202 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 99/195 (50%), Gaps = 18/195 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + +I+ G+ + + PI T L G C L H+ QD IR+ Sbjct: 4 MIQYISGTLTFKTPVLAIIETMGIGWELKIPISTYEKLPTAGKPCKLLTYLHISQDDIRI 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R+ F++L V G+G ++A+ +LS ++ ++++ ++ ++PGI K Sbjct: 64 FGFATEAERELFVMLNKVGGIGPKIALSILSTLSIPTFIKAVNSGEEGLLTRVPGIGKKS 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK V + ++ +++++ I + S SAL++LG+ Q Sbjct: 124 AQRLIVELKDD-------VHKLLNHIDQKELQIGDVSS---EVESALLSLGFNLHQ---- 169 Query: 181 VVSVLKKEKNIADDS 195 ++KE + D+S Sbjct: 170 ----IRKELALMDES 180 >gi|288803240|ref|ZP_06408674.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18] gi|288334281|gb|EFC72722.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18] Length = 205 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 25/217 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI I+G + L +++ GV Y + + T S + GK L+V T R Sbjct: 1 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAIQGKTA--VKLYVHEAIMTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + G Sbjct: 59 DNYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-------NAISALV 168 I ++ A RI+ +LK K ++Q ++ ++ H+ S P+ A+SAL Sbjct: 119 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPNTPTVNTAIKDEAVSALT 168 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + VVS+L ++ ++ + Q+++LAL+ I Sbjct: 169 MLGFSPAPSAKVVVSILAEQPDLPVE-QVVKLALKMI 204 >gi|194439064|ref|ZP_03071147.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1] gi|253773182|ref|YP_003036013.1| Holliday junction DNA helicase RuvA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161921|ref|YP_003045029.1| Holliday junction DNA helicase RuvA [Escherichia coli B str. REL606] gi|300928892|ref|ZP_07144397.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1] gi|194422023|gb|EDX38027.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1] gi|242377582|emb|CAQ32337.1| branch migration of Holliday structures; repair, subunit of resolvasome [Escherichia coli BL21(DE3)] gi|253324226|gb|ACT28828.1| Holliday junction DNA helicase RuvA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973822|gb|ACT39493.1| Holliday junction DNA helicase motor protein [Escherichia coli B str. REL606] gi|253978016|gb|ACT43686.1| Holliday junction DNA helicase motor protein [Escherichia coli BL21(DE3)] gi|300463120|gb|EFK26613.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1] gi|323961916|gb|EGB57515.1| Holliday junction DNA helicase RuvA [Escherichia coli H489] gi|323972631|gb|EGB67834.1| Holliday junction DNA helicase RuvA [Escherichia coli TA007] Length = 203 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 13/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y + P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E+K + L D+ + + S S A N A++ALV LGY Sbjct: 121 AERLIVEMKDRFKGLHG----DLFTPAADLV-LTSPASPATNDAEQEAVAALVALGYKPQ 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ V + + + A +IR ALRA Sbjct: 176 EASRMVSKIARPD---ASSETLIREALRA 201 >gi|163751784|ref|ZP_02159001.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99] gi|161328348|gb|EDP99508.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99] Length = 205 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 100/190 (52%), Gaps = 6/190 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGVLLEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +T+ E V + + + ++PG+ K Sbjct: 61 YGFMTKQERALFRLLIKTNGVGPKLALTILSGMTSVEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL----SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E++ K SL + ++ M N A I + + +AI+AL+ LGY Q Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYRPAKIVN--TAEDDAIAALLALGYKPAQ 178 Query: 177 ATTAVVSVLK 186 A+ +V + K Sbjct: 179 ASKSVSAAYK 188 >gi|89899549|ref|YP_522020.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118] gi|123091484|sp|Q220R4|RUVA_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89344286|gb|ABD68489.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118] Length = 190 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ V++D GV Y + P+ T L ++G +L +R+D L Sbjct: 1 MIGKLSGTLDDKNPPQVIVDCHGVGYEVLVPMSTFYNLPELGARVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG R A+ VLS ++ EL +++ LQ + ++PGI K Sbjct: 61 YGFATSQERAAFRELIKISGVGPRTALSVLSGMSVAELAQAVTLQEGGRLIKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK V S N QA I + AL+ LGY D+ A Sbjct: 121 AERLLLELKGKLGPDIGVA---ASVANDSQADI----------LQALLALGY-SDKEAAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L + + S+ IRLALRA+ Sbjct: 167 ALKALPSDVGV---SEGIRLALRAL 188 >gi|303238091|ref|ZP_07324631.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN] gi|302481726|gb|EFL44781.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN] Length = 205 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 25/217 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHM----RQ 55 MI IKG + L ++D GV Y + + T + GK LFV + R Sbjct: 1 MIEYIKGELAELTPALAVVDANGVGYGLNISLNTYGVIQGK--KSVKLFVHEAISMGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + G Sbjct: 59 DSYTLYGFANKQERGLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKAVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-IN------AISALV 168 I +K A RI+ +LK K +VQ ++ E+ H+ S P+ A +N A+ AL Sbjct: 119 IGLKTAQRIIVDLKDK------IVQSGIA----EELHVSSQPNAANVNNAVKDEAVGALT 168 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + VV +L ++ ++ + Q+++LAL+ I Sbjct: 169 MLGFSPAPSAKVVVDILTEQPDLPVE-QVVKLALKQI 204 >gi|228473784|ref|ZP_04058529.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC 33624] gi|228274805|gb|EEK13628.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC 33624] Length = 196 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 17/209 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + Y++ID GV Y + + T S L ++ +++D L Sbjct: 1 MITHLQGRLVEKTPTYLVIDCNGVGYWVNISLHTFSQLSDTQQL-KIYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV GVGA A +LS ++ +L +I+ + + I + GI K Sbjct: 60 FGFFDKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNSDVRTIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A RI+ +LK K + L+ S+V S NKE+ A++AL LGY + Sbjct: 120 AQRIILDLKEKMVKLTGDNASLVAASQSPSNKEE------------ALAALEVLGYPRKA 167 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V +L + Q+I+ AL+ + Sbjct: 168 AEAVVNKILTQSGQEFSVEQLIKQALKQL 196 >gi|297584758|ref|YP_003700538.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens MLS10] gi|297143215|gb|ADH99972.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens MLS10] Length = 208 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 15/213 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 MI +I+G + + + + +DV GV Y+I+C P R + + T+F H+R+D I Sbjct: 1 MIEQIRGTLLYIETETITVDVHGVGYLIHCGNPYRFQEWMN---EELTVFTYQHVREDAI 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 RL+GF +R+ F + V G+G + A+ + + ++V +I ++ K + + PG+ Sbjct: 58 RLYGFRFREERKLFEKMLQVSGIGPKGALAIATSGHPGKVVAAIESEDEKFLVKFPGVGK 117 Query: 119 KIASRIMTELKGKAISL------SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 K A +++ +LKGK L + Q+ ++ V E+ + P A+ AL LGY Sbjct: 118 KTARQMILDLKGKLGELLPDLNDHNEGQKPVNAVMNEREPVSDNPELD-EALEALKALGY 176 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 D+ + VL E D IR AL+ + Sbjct: 177 -VDRELQKIKPVLSGESMTTD--AYIRRALQEL 206 >gi|88602182|ref|YP_502360.1| Holliday junction DNA helicase RuvA [Methanospirillum hungatei JF-1] gi|88187644|gb|ABD40641.1| Holliday junction DNA helicase subunit RuvA [Methanospirillum hungatei JF-1] Length = 195 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 107/203 (52%), Gaps = 15/203 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + G V+++ G+ Y I P L+ + K D L+ E +RQD ++L Sbjct: 1 MIARIRGLVIGYETGSVIVEAGGIGYRIRVPESVLTSITK-DDEIILYTELIIRQDLMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL SV +G + + ++SR++ E+ ++I + ++++Q+ G+ K Sbjct: 60 YGFYTPEETEMFRLLISVSHIGPQTGLAIISRLSLPEICDAISSKKPEILSQVQGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K L Q + K Q +A+ AL++LGY +++A A Sbjct: 120 AERIILELQKKVSELKIQYPQTPTSSTKIQ-----------DAVLALLSLGYSREEAMGA 168 Query: 181 VV-SVLKKEKNIADDSQIIRLAL 202 + S L E S+++R AL Sbjct: 169 LERSALDTE--TVSSSELVREAL 189 >gi|304407532|ref|ZP_07389184.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus YK9] gi|304343483|gb|EFM09325.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus YK9] Length = 210 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 14/180 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +Y+++DV+ V Y ++ P + + T+++ H+R+D I+L Sbjct: 1 MIDFLKGPVAHWETEYIVLDVRDVGYRVFTP--NPYGFARSNEPVTVYIHHHVREDAIQL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L V G+G RVA+GVL+ +V +I +N + ++PGI K Sbjct: 59 FGFATREEQTMFRKLLDVSGIGPRVALGVLAGSRPEAIVAAIQQENVTFLTKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK--------EQAHICSMPSFAINAISALVNLGY 172 A R++ +LK K + D S + EQA + P A AL LGY Sbjct: 119 AQRMILDLKDKLGNAPLAFGADPSVWDTNEGKGTTGEQAIAGAWP----EAREALGALGY 174 >gi|94677012|ref|YP_588762.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123081488|sp|Q1LTF2|RUVA_BAUCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94220162|gb|ABF14321.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 196 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I +L+++ G+ Y I P+ S L IG L+ +R+D L Sbjct: 1 MIGRLRGIILEKQPPLLLLEINGIGYEIAIPMNNFSLLPAIGQETILYTHCIVREDTELL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ D F L + GVG ++A+ +L+ ++ + + +I ++ ++PG+ K Sbjct: 61 FGFIKKPDMILFRALIKINGVGPKLALAILAGMSEKQFLSAIEHNEIHMLTKLPGVGKKT 120 Query: 121 ASRIMTE----LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E LKG + SL S+ E I AI+AL++LGY + Sbjct: 121 AERLVIEMKDKLKGTSKSLFSLATIGEGLAKTE-----------IEAITALISLGYTHQE 169 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 A+ V V + N +IR ALR Sbjct: 170 ASKMVKKVAIEGANC---ETLIRDALR 193 >gi|74311809|ref|YP_310228.1| Holliday junction DNA helicase RuvA [Shigella sonnei Ss046] gi|90135833|sp|Q3Z2L9|RUVA_SHISS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|73855286|gb|AAZ87993.1| Holliday junction helicase subunit B [Shigella sonnei Ss046] Length = 203 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARTD---ASSETLIREALRA 201 >gi|256545112|ref|ZP_05472478.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC 51170] gi|256399153|gb|EEU12764.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC 51170] Length = 199 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 5/186 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ + ED +I+ + Y I T+ L +I + +F + ++R+D I L Sbjct: 1 MISYIIGEIKYIGEDNFVIENNNIGYFINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F LL SV +G + A+ +LS + ++ +I+ + + + GI K Sbjct: 60 FGFSSKDELEVFELLTSVSTIGPKNAIAILSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ + D+S N++ +I S + A AL+NLGY Q + Sbjct: 120 ASRIILELVDKVKKMA--INDDISISNQDFDNITSNGEIEV-AREALLNLGY-QRNSIDK 175 Query: 181 VVSVLK 186 V+S LK Sbjct: 176 VLSSLK 181 >gi|297155806|gb|ADI05518.1| Holliday junction DNA helicase RuvA [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 17/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGPIAAVGPDIAVVEVGGVGMAVQCTPNTLSGL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQIFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKSLTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + V + P ++ +ALV LGY +A A Sbjct: 120 AQRLLLELKDRL----------GEPVGRPAGPAAPAPGWSDQLHTALVGLGYAPREAEDA 169 Query: 181 VVSVLKK-EKNIADD-----SQIIRLALRAIS 206 V +V + E +A +Q++R AL+ ++ Sbjct: 170 VAAVTPQAEAAVAAGGSPQVAQLLRAALQTLN 201 >gi|295132466|ref|YP_003583142.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia profunda SM-A87] gi|294980481|gb|ADF50946.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia profunda SM-A87] Length = 193 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI +KG + YV++D GV Y ++ + T S KI D + + TH+ ++D Sbjct: 1 MIHHLKGKLVEKNPTYVVVDCNGVGYFVHISLNTFS---KIKDEEQIAIFTHLQVKEDSH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF +R+ F LL SV G+GA A +LS + T++ ++I + I I GI Sbjct: 58 TLFGFQEKSEREIFRLLISVSGIGASTARTMLSSLDPTQIRDAIASGDVATIQSIKGIGA 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ +LK K + + + ++ + + A+SAL LGY + QA Sbjct: 118 KTAQRVILDLKDKIVKIFGI----------DEVFVEQSNTIKEEALSALETLGYARKQA- 166 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 V++ L KE +I+LAL+ Sbjct: 167 DKVLNKLIKEIEDPTVETLIKLALK 191 >gi|156973890|ref|YP_001444797.1| Holliday junction DNA helicase motor protein [Vibrio harveyi ATCC BAA-1116] gi|156525484|gb|ABU70570.1| hypothetical protein VIBHAR_01600 [Vibrio harveyi ATCC BAA-1116] Length = 223 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 20 VIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 79 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 80 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 139 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A S + + N AISAL+ LGY Q Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQ 196 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + Q+IR AL+++ Sbjct: 197 ASKVVSQIAKPDMT---SEQLIRKALKSM 222 >gi|153832528|ref|ZP_01985195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01] gi|148871323|gb|EDL70195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01] Length = 223 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 20 VIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 79 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 80 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 139 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A S + + N AISAL+ LGY Q Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQ 196 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + Q+IR AL+++ Sbjct: 197 ASKVVSQIAKPDMT---SEQLIREALKSM 222 >gi|332968271|gb|EGK07345.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella kingae ATCC 23330] Length = 188 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 12/187 (6%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 ++IDV GV Y + ++T L +G+ L+ +R+D LFGF +R F L Sbjct: 10 IVIDVNGVGYELDVSMQTFYALPALGETVQLYTYLVVREDAHLLFGFGDASERTTFRQLI 69 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 V G+GA+ A+G+LS +T EL ++I ++ K ++ PGI K A R++ EL+GK L+ Sbjct: 70 KVSGIGAKTALGILSAMTTDELAQAIANEDVKRLSSAPGIGKKTAERMILELRGK---LA 126 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 D++ + + +S L+ LGY + +A A S+ N + + Sbjct: 127 HRGLGDLALFTP-----AADTDNRADVVSTLLALGYSEREAQAACKSL----PNGVEVGE 177 Query: 197 IIRLALR 203 +RLAL+ Sbjct: 178 GVRLALK 184 >gi|226945719|ref|YP_002800792.1| Holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ] gi|226720646|gb|ACO79817.1| holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ] Length = 204 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 113/206 (54%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + ++L++ GV Y + P+ TL L + + TL +R+D L Sbjct: 4 LIGRLRGILVEKQPPHLLVEANGVGYEVEVPMTTLYRLPSLNEPVTLHTHLVVREDAHLL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + + K + ++PG+ K Sbjct: 64 YGFCERRERELFRELIRLNGVGPKLALALMSSLELDELVRCVQAGDIKALTRVPGVGKKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S+ ++ + E + S +A+SALV LG+ +A+ A Sbjct: 124 AERLLIELKDRFKAWESL--PTVASLTLESNPDIGIASAESDALSALVALGFKPQEASRA 181 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V +E+ ++ + ++IR ALR ++ Sbjct: 182 VAAV--QEEGLSSE-ELIRRALRGMA 204 >gi|325268803|ref|ZP_08135428.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella multiformis DSM 16608] gi|324988775|gb|EGC20733.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella multiformis DSM 16608] Length = 246 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 25/217 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI I+G + L +++ GV Y + + T S L GK L+V T R Sbjct: 42 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSALQGKTT--VKLYVHEAIMTGGRD 99 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF S +R + LL +V GVGA A +LS +T EL I + K++ + G Sbjct: 100 DSYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKG 159 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168 I ++ A RI+ +LK K ++Q ++ ++ H+ S P + A++ A+SAL Sbjct: 160 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSSQPGTPAVDTAIKDEAVSALT 209 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + VVS+L + ++ + Q+++LAL+ I Sbjct: 210 MLGFSPAPSAKVVVSILTDQPDLPVE-QVVKLALKMI 245 >gi|154249486|ref|YP_001410311.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum Rt17-B1] gi|171769439|sp|A7HL71|RUVA_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154153422|gb|ABS60654.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum Rt17-B1] Length = 188 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 20/203 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +G E +L+ + GV + I + S + GD ++ + + Q+ + + Sbjct: 1 MIEIIEGIYKGRSEGKILVSINGVVFGIITDAESFSEFNE-GDKILVYTKLIVSQEDMTI 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + ++ F L V +G + A+ +LS T L +I + + ++ IPGI K Sbjct: 60 YGFDSKVKKETFEKLIKVSKLGPKTAIKILSSTTVDFLSNAIATGDVEKLSSIPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TEL K++ + + + AI ALV+LGY + QA A Sbjct: 120 AERMITEL-------------------KDEFEVVEVNEEMLEAIEALVSLGYSKTQARNA 160 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V VLK+ NI++ S+II+ AL+ Sbjct: 161 VSKVLKESPNISNVSKIIKEALK 183 >gi|218888287|ref|YP_002437608.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226725439|sp|B8DNJ8|RUVA_DESVM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218759241|gb|ACL10140.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 202 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 7/175 (4%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++ GV Y ++ P TLS L + G V T +R+D + LFGF + +RQ FM+L Sbjct: 18 VVVTEGGVGYEVHLPAHTLSRLPERGGQVAFHVRTEVREDALELFGFSTWDERQTFMVLT 77 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 ++ VGAR A+ +LS+ +L ++ + + ++ GI K A I ELK K Sbjct: 78 TISKVGARTALAILSQFRPDDLRRLVVEDDVLALTRVSGIGKKTAQHIFLELKYK----- 132 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 + +D+ F +A++ L NLGY +D+A + VLK E ++ Sbjct: 133 -LKVEDLPAGLVLAGGAAPGGVFR-DALAGLGNLGYLEDEAAPVLKEVLKAEPDL 185 >gi|317500339|ref|ZP_07958564.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 8_1_57FAA] gi|316898280|gb|EFV20326.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 8_1_57FAA] Length = 184 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 21/170 (12%) Query: 23 GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82 G+ Y ++ P + L+ L +G+ L+ ++R+D ++LFGFL+ D + F L+ V G+G Sbjct: 3 GIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQLFGFLTKDDLEIFRLVIGVSGIG 62 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK---------AI 133 + + +LS ++ EL +I+ ++K+I+ PGI K A +++ EL+ K A Sbjct: 63 PKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKTAEKLIVELRDKVDIEKMLDHAA 122 Query: 134 SLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +Q DM + N+ Q+ A+ ALV LGYG ++ AV Sbjct: 123 HPEETIQTDMAKTSANEMQSE----------AVQALVALGYGSAESLRAV 162 >gi|153875446|ref|ZP_02003246.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp. PS] gi|152068090|gb|EDN66754.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp. PS] Length = 203 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 98/187 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +++DVQGV Y ++ P+ T L +I +L +R+D L Sbjct: 1 MISRLRGLLIEKQPPLLVVDVQGVGYEVFAPMSTFYNLPEINAEISLLTHLSIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F L V G+G ++A+ +LS + + V+ + ++ + +IPG+ K+ Sbjct: 61 YGFLNESERGLFRDLIRVSGIGPKLALSILSSMELSMFVQCVNNNDTARLIRIPGVGKKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + ++ S + + +AISAL+ LGY AT Sbjct: 121 AERLVVEMRDRLKNWNTTNNTAPSPTTTSSTLTLGIATPIEDAISALIALGYKPQDATRW 180 Query: 181 VVSVLKK 187 V +V ++ Sbjct: 181 VQAVAEE 187 >gi|88607371|ref|YP_504791.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ] gi|123722839|sp|Q2GLG0|RUVA_ANAPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|88598434|gb|ABD43904.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ] Length = 191 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 116/209 (55%), Gaps = 22/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58 MIG + G IE + + +++ V GV YI++ RTL +C K GD L++ET++ +D + Sbjct: 1 MIGTLSGIIEEVQDTSIILAVGGVGYIVHVSYRTLINC--KRGDSIKLYIETYVNRDNVP 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF ++ +L V G+ R A+ +L R+T +L +I+ ++ K ++ G+ Sbjct: 59 QLYGFTDTEEQNCLKMLIKVSGINYRTALAILDRLTPDQLFSAIVNED-KAALKVGGVGA 117 Query: 119 KIASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K+ +RI TE L+ +VQ+ + + ++K + +A+SAL++LGY + Sbjct: 118 KLINRIFTE-------LTPLVQKLEFNIMDKRGPSVEDS-----DALSALLSLGYEK--- 162 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 T V++ L+K + S +R AL+ +S Sbjct: 163 -TRVLNALEKVGVSHNLSDTVRFALKELS 190 >gi|260578827|ref|ZP_05846734.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC 43734] gi|258603125|gb|EEW16395.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC 43734] Length = 211 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 15/215 (6%) Query: 1 MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQD 56 MI ++G + +GL DYV I+ GV Y T++ L + G+ +FV T + R+D Sbjct: 1 MIASLRGTVIDKGL--DYVTIECAGVGYQCSGTATTIAELPR-GE--EVFVTTALVVRED 55 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+ F +++ F LQSV GVGAR+A+ +LS IT EL ++ + K + + PG+ Sbjct: 56 SQTLYVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQKAPGV 115 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM----PSFAINAISALVNLGY 172 ++A R+ +LKGK L + P + ALV LG+ Sbjct: 116 GKRLAERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGF 175 Query: 173 GQDQATTAVVSVLKK--EKNIADDSQIIRLALRAI 205 + +A T + +VL + D S ++R +L AI Sbjct: 176 TESKAGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210 >gi|331000258|ref|ZP_08323942.1| Holliday junction DNA helicase RuvA [Parasutterella excrementihominis YIT 11859] gi|329572424|gb|EGG54077.1| Holliday junction DNA helicase RuvA [Parasutterella excrementihominis YIT 11859] Length = 189 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 24/208 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI I+G I V+I+ G+ Y I P+ T L IG+ +F+ET M R+D Sbjct: 1 MIATIRGKILQKNPPQVVIECGGLGYEIDVPMSTFYNLPNIGE--EVFLETVMIVREDAQ 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFL+ ++ F L V G+G R+++ +LS ++A ++ +I ++ +PGI Sbjct: 59 LLYGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ ELK K + S+ +S V E I ALV LG+ + +A Sbjct: 119 KTAERLVLELKDKMVVTSA---PTVSSVQTE-------------VIQALVALGFSEREAR 162 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A +V AD S+ IRL LR ++ Sbjct: 163 GAAKNVPAD----ADASEGIRLCLRQLA 186 >gi|256831252|ref|YP_003159980.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM 4028] gi|256580428|gb|ACU91564.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM 4028] Length = 198 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 12/204 (5%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + E+ VL+ GV Y ++ L+ L GD LFV T +R+D + Sbjct: 1 MIAYLEGTVLRRDEESCVLLTAGGVGYQLHLTSDGLAALPGAGDTARLFVHTLVREDALT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LF F S +RQ F+ L +G + A+ +L + EL I ++ ++++PGI K Sbjct: 61 LFAFSSWEERQAFVTLLGAPKLGPKTALAMLGCYSPAELAACIAKEDVAALSRVPGIGAK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ +LK K +S S++ P+ + + +ALV+LGYG+ + Sbjct: 121 TAKRLLLDLKDKLVSSPSLL----------PGRTAPAPTASADCAAALVSLGYGRHEVDE 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V V +KE ++ D IR AL+ Sbjct: 171 VVRVVFEKEPDL-DAGSAIRQALK 193 >gi|68536132|ref|YP_250837.1| holliday junction DNA helicase [Corynebacterium jeikeium K411] gi|90134845|sp|Q4JVD8|RUVA_CORJK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68263731|emb|CAI37219.1| holliday junction DNA helicase [Corynebacterium jeikeium K411] Length = 211 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 15/215 (6%) Query: 1 MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQD 56 MI ++G + +GL DYV I+ GV Y T++ L + G+ +FV T + R+D Sbjct: 1 MIASLRGTVIDKGL--DYVTIECAGVGYQCSGTATTIAELPR-GE--EVFVTTALVVRED 55 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+ F +++ F LQSV GVGAR+A+ +LS IT EL ++ + K + + PG+ Sbjct: 56 SQTLYVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQRAPGV 115 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM----PSFAINAISALVNLGY 172 ++A R+ +LKGK L + P + ALV LG+ Sbjct: 116 GKRLAERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGF 175 Query: 173 GQDQATTAVVSVLKK--EKNIADDSQIIRLALRAI 205 + +A T + +VL + D S ++R +L AI Sbjct: 176 TESKAGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210 >gi|51892298|ref|YP_074989.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum IAM 14863] gi|81389173|sp|Q67Q98|RUVA_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|51855987|dbj|BAD40145.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum IAM 14863] Length = 205 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+V+IDV GV Y P T S L G L+ +R+D + L Sbjct: 1 MIAHLRGELVTAGADWVVIDVAGVGYRCLVPASTRSRLPAQGAAVQLYTYLQVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL V GVG +VA+ VLS ++ ++ I ++PGI K Sbjct: 61 YGFLTQAEYDLFELLLRVDGVGPKVALAVLSTTDPAAFRRAVAFEDLDAICRVPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + +V + + A AL+ LGY + +A A Sbjct: 121 AQRLVLELKDK---IGAVPAGGGGVPDGLPVAVAPAGDAWAEASEALIALGYSRGEAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V + ++RLAL+ Sbjct: 178 LARVRAEAGEAPSVETLVRLALK 200 >gi|269963130|ref|ZP_06177465.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3] gi|269832094|gb|EEZ86218.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3] Length = 223 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 20 VIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 79 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 80 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 139 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 A R++ E+K + L D+ + A S + + N AISAL+ LGY Q Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPADSGSAGSNNAEEEAISALLALGYKPTQ 196 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + Q+IR AL+++ Sbjct: 197 ASKVVSQIAKPDMT---SEQLIREALKSM 222 >gi|302541121|ref|ZP_07293463.1| Holliday junction DNA helicase RuvA [Streptomyces hygroscopicus ATCC 53653] gi|302458739|gb|EFL21832.1| Holliday junction DNA helicase RuvA [Streptomyces himastatinicus ATCC 53653] Length = 206 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 23/216 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L + +I+V GV + C TLS L +IG+ L +R+D + L Sbjct: 1 MIAFVSGPVAALAPNTAVIEVGGVGMALQCTPGTLSGL-RIGEAARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHAPDALRLAVSTGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQ 176 A +++ ELK G+ + + + + +Q H +ALV LGY + Sbjct: 120 AQKLLLELKDRLGEPVGTTVPAARPPAAAGWSDQLH------------TALVGLGYATRE 167 Query: 177 ATTAVVSVLKK------EKNIADDSQIIRLALRAIS 206 A AV +V + E + +Q++R AL+ ++ Sbjct: 168 ADEAVSAVTPQAEAALAEGGMPQVAQLLRAALQTLN 203 >gi|23099492|ref|NP_692958.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831] gi|33301656|sp|Q8EPQ5|RUVA_OCEIH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|22777721|dbj|BAC13993.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831] Length = 201 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + L ++ +++DV G+ Y I CP + + H+R+D L Sbjct: 1 MIAYIKGTLNSLGDESLIVDVGGIGYEIVCP-NPFVFQDLLNQQIHIQTYHHVREDAQIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L SV G+G + A+ +L+ + + + ++ ++ K + PG+ K Sbjct: 60 FGFQNRDEKYLFTKLISVSGIGPKGALAILAGVDISGFIAAVENEDDKFLTSFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ +LKGK S+ S+ QQ S N + S A+ AL LGY D+ Sbjct: 120 ARQIILDLKGKLTSVFSITDEQQKSSVSNVNNNEVYS------EAMEALKALGY-TDKEV 172 Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202 V+ LKK+ + + IR AL Sbjct: 173 KQVLPHLKKDNDALSVDEAIRKAL 196 >gi|229543702|ref|ZP_04432762.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1] gi|229328122|gb|EEN93797.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1] Length = 200 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I+ + DY++++ G+ Y + P + IG +F H+R+D I L Sbjct: 1 MYEYIKGIIDSVSPDYIVVENGGIGYRLLAPNPYIFS-KSIGQERKIFTYQHVREDLIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G + A+ +L+ ++V++I +N + + PG+ K Sbjct: 60 YGFETAEERALFQKLLNVSGIGPKGALAILAYGQPQQVVDAIENENESFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L +V + E+A S A+ AL LGY + + Sbjct: 120 ARQMILDLKGK---LQGLVPEMPDEAGVEKAVPASTNQNLEEAMLALAALGYSEKE-IAK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VV L +E AD + I+LAL+A+ Sbjct: 176 VVPELPEEVLSAD--EYIKLALKAM 198 >gi|312892324|ref|ZP_07751819.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter paludis DSM 18603] gi|311295108|gb|EFQ72282.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter paludis DSM 18603] Length = 194 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 15/190 (7%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YV+ID GV Y I + T S + + C LF H+++D L+GF + +R+ F+ L Sbjct: 16 YVIIDAGGVGYHINISLNTYSNISD-KESCKLFTWLHVKEDAHTLYGFADEGERRLFLHL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV G+GA +LS IT E+ +II + +I +I GI K A RI+ EL+ K Sbjct: 75 ISVSGIGANTGRMILSSITPAEIQNAIIKGDVPLIQRIKGIGPKSAQRIVLELQDK---- 130 Query: 136 SSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 +++D + +N H A+SALV LG+ ++ A+ + +K + Sbjct: 131 ---LRKDGPDTLINVPVIHTAKD-----EALSALVMLGFAKNVGEKALDNAIKSTTDNLT 182 Query: 194 DSQIIRLALR 203 Q+I++AL+ Sbjct: 183 VEQLIKIALK 192 >gi|308235709|ref|ZP_07666446.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis ATCC 14018] gi|311114741|ref|YP_003985962.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella vaginalis ATCC 14019] gi|310946235|gb|ADP38939.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella vaginalis ATCC 14019] Length = 212 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 9/211 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G IE + LI V GV Y +Y P L+ L + G ++ + QD + L Sbjct: 1 MIGMLNGVIESVDSRCALICVSGVGYEVYMPSSDLAALHE-GQDVKVYTSLQVSQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S ++ F+ +Q V GVG +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTSMPAKRIFLQIQQKVSGVGPKVALSLLSTLNVNRLLQAIADGDITALSSAPGLGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ ELKG +I +S + + D S +K + + L++LG+ Q A Sbjct: 120 GAQKIVLELKG-SIDVSQLNEDDTSKDSKSYKKEFDESGIS-KVVDGLMSLGWKQSDAQR 177 Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205 AV +V EK + +D ++R+AL A+ Sbjct: 178 AVENVCNSEKIALPISDSDMPNVLRMALAAL 208 >gi|220912786|ref|YP_002488095.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus A6] gi|254766940|sp|B8H9D7|RUVA_ARTCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219859664|gb|ACL40006.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus A6] Length = 213 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +ID+ G +Y +TLS L +G+ +F +R+D + L Sbjct: 1 MISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSRL-HVGEEGKVFTSLIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R+ F +L SV GVG R+A+ VL+ + + ++K ++PGI K+ Sbjct: 60 FGFADDDEREVFEVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDNKTFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + + + S+ ++A+ +LG+ + A+ + Sbjct: 120 AGRIVLELAGKLVPHGTAPAAATTAAEA---------SWKPQVVAAMTSLGWSEKDASAS 170 Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203 + L E ++ + +I+R LR Sbjct: 171 IDKALADEPEVSFRGNVPEILRTTLR 196 >gi|257455268|ref|ZP_05620503.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60] gi|257447230|gb|EEV22238.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60] Length = 206 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 2/132 (1%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + L V++ GV Y I P+ C ++ TL+ +R+D Sbjct: 1 MIGLIQGQVHHLMAPTVVVMTTAGVGYEIEMPLNAF-CQVQLNQSVTLWTHFLVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFLS DR+ F LL V GVGA++A+ ++S +T EL + ++ + + +IPG+ K Sbjct: 60 LFGFLSHSDREVFRLLLKVNGVGAKMALAMMSTVTVQELHQFVMNNDELALTRIPGVGKK 119 Query: 120 IASRIMTELKGK 131 A R++ ELK K Sbjct: 120 TAQRLIVELKDK 131 >gi|239932397|ref|ZP_04689350.1| Holliday junction DNA helicase RuvA [Streptomyces ghanaensis ATCC 14672] gi|291440764|ref|ZP_06580154.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291343659|gb|EFE70615.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 201 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RVGRPAKLHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGK 131 A +++ ELK + Sbjct: 120 AQKLLLELKDR 130 >gi|91227614|ref|ZP_01261918.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 12G01] gi|91188507|gb|EAS74800.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 12G01] Length = 203 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 25/216 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TAT+ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 A R++ E+K + + ++ + N E+ AISAL+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEE-----------EAISALLA 169 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LGY QA+ V + K + + Q+IR AL+++ Sbjct: 170 LGYKPTQASKVVSQIAKPDMS---SEQMIREALKSM 202 >gi|260060653|ref|YP_003193733.1| Holliday junction DNA helicase RuvA [Robiginitalea biformata HTCC2501] gi|88784783|gb|EAR15952.1| Holliday junction DNA helicase motor protein [Robiginitalea biformata HTCC2501] Length = 193 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 19/194 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI + G + + +++I+ GV Y + + T S L D L + TH+ R+D Sbjct: 1 MIEHLTGRLIEKHPTHLVIECAGVGYFVNISLNTFSALP---DEEQLRIYTHLQVREDAH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF S +R+ F LL SV GVGA A +LS +T +L E+I + I + GI Sbjct: 58 TLFGFYSVAEREAFRLLISVSGVGASTARTMLSSMTPAQLREAIASGDVPAIQAVKGIGA 117 Query: 119 KIASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ +L+ K + + + V NKE+ A+SAL LGY + Q Sbjct: 118 KTAQRVILDLRDKILKIYDLDEVSLKPDNTNKEE------------ALSALEVLGYSRKQ 165 Query: 177 ATTAVVSVLKKEKN 190 + AV +VL+++ + Sbjct: 166 SEKAVDTVLRQDPS 179 >gi|121998991|ref|YP_001003778.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1] gi|166230558|sp|A1WZ64|RUVA_HALHL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|121590396|gb|ABM62976.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1] Length = 204 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++++ G+ Y + P+ T+ L + G L +R+D L Sbjct: 1 MIARLRGTLLEKRPPTLVVEANGLGYEVEAPLSTIEALPETGREVILHTHLSVREDGQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++ + +LS + ELV + + K + Q+PGI K Sbjct: 61 FGFRTRAERDLFRRLIRVSGVGPKLGLALLSGVDGEELVRCVRDDDPKRLTQVPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + L V + H AI LV LGY +A Sbjct: 121 AERLIVELRDR---LDGVGGGSTAAPAAGADHPTGENDPVSEAIEGLVALGYKPPEAARM 177 Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206 + + E IIR AL RA+ Sbjct: 178 ARNAAEPELGC---EAIIRRALQRAVP 201 >gi|260910076|ref|ZP_05916757.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral taxon 472 str. F0295] gi|260635788|gb|EEX53797.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral taxon 472 str. F0295] Length = 205 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI IKG++ L +I+ GV Y + + T S + GK D LFV T R Sbjct: 1 MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYSAIQGK--DKLKLFVHEALVTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF + +R+ + LL SV GVGA A +LS ++ +EL I + K++ + G Sbjct: 59 DSYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPSELCNVIAAGDDKMLKTVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I K A RI+ +LK K ++S V Q++S V + A+ AL LG+ Sbjct: 119 IGAKTAQRIIVDLKDKI--MTSGVAQELS-VPTNANANAMNAAVKDEAVGALTMLGFAPA 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +LK++ ++ + Q+++ AL+ I Sbjct: 176 TSAKVVVEILKEQPDLPVE-QVVKAALKMI 204 >gi|256825358|ref|YP_003149318.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius DSM 20547] gi|256688751|gb|ACV06553.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius DSM 20547] Length = 209 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + D+++++V GV + P + + + + G L +R+D + L Sbjct: 1 MIASLSGTITHVGLDHLVVEVGGVGMRVLVPPQVAAEV-RTGQEARLETSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL R+ F +QSV GVG R+A+ +++ ++ EL ++ ++ + +PGI K Sbjct: 60 FGFLDADTREVFETVQSVSGVGPRLALALVAVLSPAELSRAVHTEDLAALTSVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQAT 178 A R++ EL GK L + + + EQ+ S P++A AL LG+ QAT Sbjct: 120 AQRLVLELVGK---LPADLGGGAAPTTTEQSAGGDPSEPAWAPQVRDALEGLGWNTAQAT 176 Query: 179 TAVVSVLKKEKNIADDSQ----IIRLALR 203 A +V+++ ++R ALR Sbjct: 177 KATRTVVEQHAQDTGPPPELPVLLREALR 205 >gi|226311452|ref|YP_002771346.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] gi|254766947|sp|C0ZAN3|RUVA_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226094400|dbj|BAH42842.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] Length = 205 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 17/198 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +Y++I+ G+ Y ++CP + G+ LF H+R+D I L Sbjct: 1 MIDFVEGTLSYLDSEYIVIETGGIGYRLFCP-NPYQFVRYEGNKTKLFTHHHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ T +LV ++ +N + + PGI K Sbjct: 60 YGFATRDERDLFRKLLDVSGIGPKGGLAILAAATPEQLVMAVQQENVTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLS-----SVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGY-- 172 A RI+ +LK K + + +V D++ EQA A+N A+ AL LGY Sbjct: 120 AQRIILDLKDKLVGYTPSAILTVAAGDLTA--GEQA------VSALNEALDALTALGYSD 171 Query: 173 GQDQATTAVVSVLKKEKN 190 G+ Q +S KE + Sbjct: 172 GELQKIRNTLSEKSKEGD 189 >gi|27365489|ref|NP_761017.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6] gi|161486619|ref|NP_935078.2| Holliday junction DNA helicase motor protein [Vibrio vulnificus YJ016] gi|320155872|ref|YP_004188251.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O] gi|29611844|sp|Q8DAN4|RUVA_VIBVU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|44888369|sp|Q7MJ77|RUVA_VIBVY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|27361637|gb|AAO10544.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6] gi|319931184|gb|ADV86048.1| holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O] Length = 204 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + S+ D+ + A + S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + Q+IR AL+++ Sbjct: 178 ASKVVSQIAKPDMT---SEQLIREALKSM 203 >gi|225018933|ref|ZP_03708125.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum DSM 5476] gi|224948277|gb|EEG29486.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum DSM 5476] Length = 202 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 15/190 (7%) Query: 1 MIGKIKGNIEGLY--EDYVL--IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI I+G +E L +++ L ID G+ Y I + T S L K G L+ ++R+D Sbjct: 1 MIYSIQGELELLTPADNHFLAVIDCGGIGYEIRTTMTTASQL-KQGGKAKLYTYLNVRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + LFGF +R F +L SV GVG + A+ +LS +T ++ + +SK + + GI Sbjct: 60 AVELFGFFDTEERNCFKMLISVSGVGPKAALSILSNVTPSQFALCVASGDSKSLTRAKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---AISALVNLGYG 173 KIA RI+ ELK K + + + ++PS + N A+SALV LGY Sbjct: 120 GAKIAQRIVLELKDK-------ISNEQLAGGVTDSGSVALPSGSGNTAEAVSALVVLGYN 172 Query: 174 QDQATTAVVS 183 + A A+ S Sbjct: 173 KTDAVQALSS 182 >gi|282860281|ref|ZP_06269351.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010] gi|282586955|gb|EFB92190.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010] Length = 205 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57 MI IKG + L +++ +GV Y I + T S + D E T R D Sbjct: 1 MIEYIKGELAELTPTLAVVEARGVGYAINISLNTYSAIQGKNDIKLYIHEAIVTGGRDDS 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GFLS +R + LL +V GVGA A +LS +T +EL I + K++ + GI Sbjct: 61 YTLYGFLSKQERSLYRLLITVSGVGANTARMILSSLTPSELCNVIANGDEKMLKAVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LK K + S + ++ + + + + A+SAL+ LG+ + Sbjct: 121 LKTAQRIIVDLKDKI--MQSGIADELHINSSSASSNINT-AVKDEALSALIMLGFSPAPS 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 VVS+L ++ + + Q+++LAL+ I Sbjct: 178 AKVVVSILTEQPELPVE-QVVKLALKMI 204 >gi|198282210|ref|YP_002218531.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665092|ref|YP_002424575.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 23270] gi|226698723|sp|B5EJL8|RUVA_ACIF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725431|sp|B7J3G2|RUVA_ACIF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|198246731|gb|ACH82324.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517305|gb|ACK77891.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 193 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 11/184 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I ++ +DVQGV Y + P+ + G T+ +R+D L Sbjct: 1 MITSLTGTILQRRPPWLWLDVQGVGYELEMPLSGFYQMPAEGAALTVHTHLTIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL V G+G +VA+ LS + A L +++ N+ + IPGI K Sbjct: 61 YGFMTVAERDMFRLLIRVNGIGGKVALACLSGLPAERLSQAVAEGNTAQLTAIPGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ + Q AI+AL+ LGY QA+ A Sbjct: 121 AERLVVELRDKMGGIAPGPMGRGGAGDPRQ-----------EAIAALLTLGYKPAQASQA 169 Query: 181 VVSV 184 + + Sbjct: 170 IAGL 173 >gi|260551462|ref|ZP_05825646.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624] gi|260405456|gb|EEW98949.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624] Length = 203 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 108/212 (50%), Gaps = 22/212 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 5 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 64 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAIN-----AISALVNLGYG 173 A R+M EL+ + +L+ Q S V +MP FA N A +AL +LGY Sbjct: 124 AERLMIELRDRFKTLA----QGTSTV-------ATMPQIQFAANSPVAEAEAALQSLGYK 172 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A AV +V AD IIR AL+++ Sbjct: 173 PLEAQKAVAAVKADYTESAD---IIRAALKSM 201 >gi|225012191|ref|ZP_03702628.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-2A] gi|225003746|gb|EEG41719.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-2A] Length = 193 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 15/183 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + V+ID G+ Y + + T S LG + LF +R+D L Sbjct: 1 MITQIIGRLVEKSPTQVVIDCHGIGYEVNISLNTYSQLGD-DENIKLFTHLQIREDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++R F LL SV G+GA +A +LS + ++ +II ++ I I GI +K Sbjct: 60 FGFFTPMERSVFRLLLSVSGIGASIARTMLSSLEPQQIQRAIISEDLNTIKSIKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A R++ ELK K ++L E I S + I A+SAL LGY + Q+ Sbjct: 120 AQRVLIELKDKMLNLY------------EGEEIQSFANNTIKEEALSALEVLGYSRKQSE 167 Query: 179 TAV 181 + Sbjct: 168 KVI 170 >gi|167552471|ref|ZP_02346224.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322886|gb|EDZ10725.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 203 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRIRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + V A S + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLNGDLFTPAVDLVLTSPASPTSEDA-EQEAVAALVALGYKPQEASR 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 180 MVSKIARPD---ASSETLIRDALRA 201 >gi|229814935|ref|ZP_04445273.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM 13280] gi|229809422|gb|EEP45186.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM 13280] Length = 207 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 15/172 (8%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 +IDV G+ + + T S L ++G L+ +R+D LFGF + +R F L S Sbjct: 18 VIDVNGIGFELGISATTASSLAQVGSPTRLYTRMVVREDSCTLFGFATKDERTMFDKLVS 77 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V GVGA++A+ +LS T EL +++++ K +A +PG+ K A R++ ELKG Sbjct: 78 VSGVGAKLALAILSSFTVPELYTLVMMEDDKGMATVPGVGKKTAQRLILELKG------- 130 Query: 138 VVQQDMSCVNKEQAHICSMPSFAI--------NAISALVNLGYGQDQATTAV 181 V ++D S + + A +A +AL+++G+ + T A+ Sbjct: 131 VFEKDRSLAGSAAPTVPLPFAPAAAAAPSAIEDATAALLSMGFTAAEVTLAL 182 >gi|260779157|ref|ZP_05888049.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC BAA-450] gi|260605321|gb|EEX31616.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC BAA-450] Length = 224 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 110/210 (52%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 20 VIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 79 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 80 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 139 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAISALVNLGYGQD 175 A R++ E+K + L D+ + + A + S P + AISAL+ LGY Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPHTDAAPVDSAPQVDQANAEEEAISALLALGYKPT 196 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ V V K +++ + ++IR AL+++ Sbjct: 197 QASKVVSQV--KTADMSSE-ELIREALKSM 223 >gi|212711936|ref|ZP_03320064.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM 30120] gi|212685458|gb|EEB44986.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM 30120] Length = 205 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISL-----SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++ E+K + L +SV D+ V ++ S A +AL+ LGY Sbjct: 121 AERLVVEMKDRFKGLNGDLFNSVSDIDLPSV---KSQGPSQADIEAEAAAALIALGYKPQ 177 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ V V K + +D +IR ALRA Sbjct: 178 EASRMVSKVAKPD---SDSETLIRDALRA 203 >gi|303258188|ref|ZP_07344195.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium 1_1_47] gi|302858941|gb|EFL82025.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium 1_1_47] Length = 189 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 24/208 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI I+G I V+++ G+ Y I P+ T L IG+ +F+ET M R+D Sbjct: 1 MIATIRGKILQKNPPQVVVECGGLGYEIDVPMSTFYNLPNIGE--EVFLETVMIVREDAQ 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFL+ ++ F L V G+G R+++ +LS ++A ++ +I ++ +PGI Sbjct: 59 LLYGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ ELK K + S+ ++ S I ALV LG+ + +A Sbjct: 119 KTAERLVLELKDKMVVTSA----------------PTVSSVQTEVIQALVALGFSEREAR 162 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A +V AD S+ IRL LR ++ Sbjct: 163 GAAKNVPAD----ADASEGIRLCLRQLA 186 >gi|225873651|ref|YP_002755110.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC 51196] gi|254766934|sp|C1F8Z2|RUVA_ACIC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225792770|gb|ACO32860.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC 51196] Length = 198 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +++ GV Y + + T + L G L + T + +D I L Sbjct: 1 MIAHLRGTLLSKQPGQAIVECAGVGYDVAISVPTFTALPAEGAEVRLHIHTQVSEDAIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +++ F L +V GVG ++A+ +LS ++ V ++ Q+ + +IPG+ K+ Sbjct: 61 FGFLDREEKRLFERLITVSGVGPKLAIKMLSGLSPERTVAALRAQDHASLTRIPGVGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L + A + +SAL+NLGY + A A Sbjct: 121 AERLVVELKDKLDDLIAAAPAAGPVAAGPAAE---------DVLSALLNLGYQRPAALKA 171 Query: 181 VVSVLKKEKNIADDSQII-RLALRAI 205 + + ++K+ +D ++ R AL+ I Sbjct: 172 IETAVEKDAAAGEDFDLLFRAALKLI 197 >gi|30063272|ref|NP_837443.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 2457T] gi|30041524|gb|AAP17252.1| Holliday junction helicase subunit B [Shigella flexneri 2a str. 2457T] gi|313650643|gb|EFS15045.1| holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 2457T] gi|332757632|gb|EGJ87965.1| holliday junction DNA helicase RuvA [Shigella flexneri 2747-71] gi|332758049|gb|EGJ88375.1| holliday junction DNA helicase RuvA [Shigella flexneri K-671] gi|333004779|gb|EGK24301.1| holliday junction DNA helicase RuvA [Shigella flexneri K-218] gi|333018630|gb|EGK37924.1| holliday junction DNA helicase RuvA [Shigella flexneri K-304] Length = 203 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + + +IR ALRA Sbjct: 181 VSKIARPDTS---SETLIREALRA 201 >gi|93005514|ref|YP_579951.1| Holliday junction DNA helicase RuvA [Psychrobacter cryohalolentis K5] gi|123386742|sp|Q1QCY6|RUVA_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|92393192|gb|ABE74467.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter cryohalolentis K5] Length = 207 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I P+ + C ++ + +++ H+R+D Sbjct: 1 MIGLINGQVQYLMAPTACVMTTSGVGYDIELPLPSF-CQLRLNEQASIWTHFHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R F L + GVGA++A+ +LS ++A EL + + + +IPGI K Sbjct: 60 LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQDSEDALTRIPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK K + ++ D S + + A I + S AL++LGY + +A Sbjct: 120 TAQRLLIELKDKLKN----IEVDSSHLEFAMQPAPISAEGSIIAEVEGALISLGYKEREA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 A+ + + AD +++ L+ Sbjct: 176 QQAIKAAKSNGETFADTQSLLKATLQ 201 >gi|319761299|ref|YP_004125236.1| holliday junction DNA helicase ruva [Alicycliphilus denitrificans BC] gi|330823173|ref|YP_004386476.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans K601] gi|317115860|gb|ADU98348.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans BC] gi|329308545|gb|AEB82960.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans K601] Length = 190 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 23/209 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G +L + +R+D L Sbjct: 1 MIGKLTGALLEKNPPEVLLDCHGVGYEVLVPMSTFYNLPAVGQPVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L V GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFATQQERQAFRELIKVSGVGPRTALSILSGLGVADLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + DM + H S I + AL+ LGY +A A Sbjct: 121 AERLLL-------ELKGKLGADMGG----RPHAASADQADI--LQALLALGYNDKEAAAA 167 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + K + D S+ I+LAL++++ Sbjct: 168 L-------KGLPADVGVSEGIKLALKSLA 189 >gi|255038209|ref|YP_003088830.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM 18053] gi|254950965|gb|ACT95665.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM 18053] Length = 196 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 106/193 (54%), Gaps = 9/193 (4%) Query: 13 YED--YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70 Y+D Y +IDV GV Y + ++T + L IG C L ++R+D L+GF + +++ Sbjct: 11 YKDPAYAIIDVNGVGYEVRISLQTYTSLPDIGARCKLVTFLNIREDAHVLYGFWGNDEKK 70 Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F+ L S+ G+G A+ +LS ++++E+ + II ++ ++I I GI K A R++ EL+ Sbjct: 71 LFLDLTSISGIGPSTALVMLSSLSSSEIRQGIIDEDLRLIQSIKGIGSKTAQRVILELRD 130 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190 K ++++ ++ S + A++ALV LG + A ++ +++K+E Sbjct: 131 K-------IRKEELVSTGPRSVEASSNTLRSEALAALVTLGIPKATAEKSLDAIIKREGP 183 Query: 191 IADDSQIIRLALR 203 +I+LALR Sbjct: 184 SISVENLIKLALR 196 >gi|46580661|ref|YP_011469.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. Hildenborough] gi|81566321|sp|Q729U3|RUVA_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46450080|gb|AAS96729.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. Hildenborough] gi|311234390|gb|ADP87244.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris RCH1] Length = 202 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++ GV Y ++ P TL+ L G + F+ T +R+D + L+GF + +RQ F++L Sbjct: 18 VVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALELYGFATWDERQTFIVLT 77 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 S+ VGA+ + +LS+ +L ++ + + ++ GI K A I ELK K Sbjct: 78 SISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKKTAQHIFLELKYK----- 132 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 + +D+ F +A++ L NLGYG+++A+ + VL E ++ Sbjct: 133 -LKVEDLPAAAPLVTGGAPGGVFR-DALAGLANLGYGEEEASHVLKDVLHGEPDL 185 >gi|325474386|gb|EGC77574.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema denticola F0402] Length = 201 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 15/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + G D V ++ G+ + I+ L LG +G ++ + R+DQ+RL Sbjct: 1 MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V+GVG R A+ ++S + + L +++ + + + PG+ K Sbjct: 61 FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNFSSLEKALEEGDLDTLQKAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKGK +L+ V + + V+ E I ++AL +G+ + Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCEYEDI----------VTALTEMGFERKSVIFQ 170 Query: 181 VVSVLKKEKNIADD-----SQIIRLALRAIS 206 V + ++ K D ++ R ++ A+S Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201 >gi|120602036|ref|YP_966436.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris DP4] gi|166230546|sp|A1VC43|RUVA_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120562265|gb|ABM28009.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio vulgaris DP4] Length = 202 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++ GV Y ++ P TL+ L G + F+ T +R+D + L+GF + +RQ F++L Sbjct: 18 VVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALELYGFATWDERQTFIVLT 77 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 S+ VGA+ + +LS+ +L ++ + + ++ GI K A I ELK K Sbjct: 78 SISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKKTAQHIFLELKYK----- 132 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 + +D+ F +A++ L NLGYG+++A+ + VL E ++ Sbjct: 133 -LKVEDLPAAAPLVTGGAPGGVFR-DALAGLANLGYGEEEASHVLKEVLHGEPDL 185 >gi|169632720|ref|YP_001706456.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii SDF] gi|229470531|sp|B0VT90|RUVA_ACIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169151512|emb|CAP00277.1| holliday junction helicase subunit A [Acinetobacter baumannii] Length = 199 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVIREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + ++ Q S Q S A A +AL +LGY +A A Sbjct: 120 AERLMIELRDR---FKTLAQGTSSAAALPQIQFVSNSPVA-EAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|42518563|ref|NP_964493.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC 533] gi|81668203|sp|Q74KV9|RUVA_LACJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|41582848|gb|AAS08459.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC 533] gi|329666839|gb|AEB92787.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii DPC 6026] Length = 192 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 14/193 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y+++DV GV Y I CP + T++VE +R I L Sbjct: 1 MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSYDENQP---ATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK V K A PS +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKL----------GDYVKKSTAAADLTPSLQ-DALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIAD 193 + K +N AD Sbjct: 167 TPKLAKLPENTAD 179 >gi|260591290|ref|ZP_05856748.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319] gi|260536656|gb|EEX19273.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319] Length = 205 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 111/217 (51%), Gaps = 25/217 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI IKG + L +++ GV Y + + T S + GK L+V T R Sbjct: 1 MIEYIKGELAELTPAMAVVEAHGVGYALNISLNTYSAIQGKTA--VKLYVHEAIMTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + G Sbjct: 59 DNYTLYGFANKQERALYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAIN------AISALV 168 I ++ A RI+ +LK K ++Q ++ ++ H+ + P + A++ A+SAL Sbjct: 119 IGLRTAQRIIVDLKDK------IMQSGIA----DELHVSNTPGTPAVDAGIKDEAVSALT 168 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + VVS+L ++ ++ + Q+++LAL+ I Sbjct: 169 MLGFSPAPSAKVVVSILTEQPDLPVE-QVVKLALKMI 204 >gi|260437054|ref|ZP_05790870.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM 2876] gi|292810363|gb|EFF69568.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM 2876] Length = 198 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 112/206 (54%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + + + ++++ GV Y I P + L IG ++ ++++D + L Sbjct: 1 MITYIVGELTYIDNNTIILEACGVGYEITVPESVIPSLPGIGSSIKIYTYQNVKEDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F L +V G+G + A+ +LS I+ EL ++I + K I PGI K Sbjct: 61 YGFLTMDDLKIFKQLITVNGIGPKGALSILSVISPDELRLAVISDDVKKIQSAPGIGSKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + VV ++ E+ + S+ A+SAL++LGY ++ +A Sbjct: 121 AQKLIIELKDK-LKIEDVVYD----LHDEKDIVKSVRD---EAVSALISLGYSNSESVSA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +++ E ++D I++ AL+ ++ Sbjct: 173 VSALVITENMTSED--ILKQALKKLA 196 >gi|238919502|ref|YP_002933017.1| Holliday junction DNA helicase RuvA [Edwardsiella ictaluri 93-146] gi|238869071|gb|ACR68782.1| holliday junction DNA helicase RuvA, putative [Edwardsiella ictaluri 93-146] Length = 204 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G I V+++ GV Y + P+ L ++G +F +R+D L Sbjct: 3 VIGRLRGTILEKQPPQVVLEAHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 63 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEVAALVKLPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ---AHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K + LS D+ Q A + A++AL+ LGY +A Sbjct: 123 AERLVVEMKDRFKGLSG----DLFTPADAQLPSAQPQAQADAEGEAVAALIALGYKPQEA 178 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V V AD +IR ALRA Sbjct: 179 SRLVNRVAVAG---ADSETLIRDALRA 202 >gi|293609857|ref|ZP_06692159.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828309|gb|EFF86672.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123084|gb|ADY82607.1| holliday junction helicase subunit A [Acinetobacter calcoaceticus PHEA-2] Length = 199 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 108/212 (50%), Gaps = 22/212 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAIN-----AISALVNLGYG 173 A R+M EL+ + +L+ Q S V +MP FA N A +AL +LGY Sbjct: 120 AERLMIELRDRFKTLA----QGTSTV-------ATMPQIQFAANSPVAEAEAALQSLGYK 168 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A AV +V AD IIR AL+++ Sbjct: 169 PLEAQKAVAAVKADYTESAD---IIRAALKSM 197 >gi|297195496|ref|ZP_06912894.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|197722111|gb|EDY66019.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 202 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 16/175 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TLS L +IG L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPNTLSGL-RIGQEAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ ELK G+ + V +S ++Q H +AL+ LGY Sbjct: 120 AQKLLLELKDRLGEPLGTGPAVGAPVSRSWRDQLH------------AALIGLGY 162 >gi|169795065|ref|YP_001712858.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AYE] gi|213158273|ref|YP_002320324.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB0057] gi|215482614|ref|YP_002324806.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB307-0294] gi|239501033|ref|ZP_04660343.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB900] gi|260556549|ref|ZP_05828767.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC 19606] gi|301344817|ref|ZP_07225558.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB056] gi|301510228|ref|ZP_07235465.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB058] gi|301595121|ref|ZP_07240129.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB059] gi|332851087|ref|ZP_08433196.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013150] gi|332869664|ref|ZP_08438852.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013113] gi|226698802|sp|A3M7W0|RUVA_ACIBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725429|sp|B7GYB6|RUVA_ACIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725430|sp|B7I5A8|RUVA_ACIB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229470533|sp|B0VDI6|RUVA_ACIBY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169147992|emb|CAM85855.1| holliday junction helicase subunit A [Acinetobacter baumannii AYE] gi|193078070|gb|ABO13004.2| holliday junction helicase subunit A [Acinetobacter baumannii ATCC 17978] gi|213057433|gb|ACJ42335.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB0057] gi|213986860|gb|ACJ57159.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB307-0294] gi|260409808|gb|EEX03108.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC 19606] gi|332730251|gb|EGJ61576.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013150] gi|332732566|gb|EGJ63799.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013113] Length = 199 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + ++ Q S Q S A A +AL +LGY +A A Sbjct: 120 AERLMIELRDR---FKTLAQGTSSAAALPQIQFVSNSPVA-EAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|44888463|sp|Q83GK0|RUVA_TROWT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 194 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 111/206 (53%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V++++ G+ +++ P S ++ L+ +R+D + L Sbjct: 1 MIASLSGLLEAVRPGSVVVNMHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S L+ F L ++ GVG RVA+ +LS +T E+ +++ + K + ++ G+ K+ Sbjct: 58 YGFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKL 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +L GK L+SV N++Q + + AL+ LG+ + ++ A Sbjct: 118 AGTIVLQLAGK---LTSV-----PLENRKQEQAVDR---SAEIVQALIGLGWQRQESAAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V SVL+K++++ +I+R ALR ++ Sbjct: 167 VESVLEKDQSLT-MPEILRNALRYLA 191 >gi|317505321|ref|ZP_07963249.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella salivae DSM 15606] gi|315663535|gb|EFV03274.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella salivae DSM 15606] Length = 205 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI IKG + L +++ GV Y + + T S + GK L+V T R Sbjct: 1 MIEYIKGQLAELTPALAVVEAAGVGYALNISLTTYSGIQGK--KEVKLYVHEALTTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D LFGF++ +R+ + LL +V GVGA A +LS + TEL +I + ++I + G Sbjct: 59 DSFTLFGFVNKQERELYRLLITVSGVGANTARMMLSSMNPTELCNAIANGDERMIKTVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I +K A RI+ +L+ K ++S + ++ V E+A + A++AL LG+ Sbjct: 119 IGLKTAQRIIVDLRDKI--MASGIANELH-VGGEKAESTLNNAVKEEAVAALTMLGFSPA 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 VVS+L+K+ N+ + Q+++ AL+ Sbjct: 176 PIAKVVVSILQKQANLPVE-QVVKEALK 202 >gi|152970923|ref|YP_001336032.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580323|ref|YP_002237747.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342] gi|238895438|ref|YP_002920173.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae NTUH-K2044] gi|262041978|ref|ZP_06015160.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934605|ref|YP_003438664.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22] gi|290508806|ref|ZP_06548177.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55] gi|330001163|ref|ZP_08303909.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3] gi|166230560|sp|A6TB31|RUVA_KLEP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698734|sp|B5XQ04|RUVA_KLEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150955772|gb|ABR77802.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569381|gb|ACI11157.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342] gi|238547755|dbj|BAH64106.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040676|gb|EEW41765.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288889314|gb|ADC57632.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22] gi|289778200|gb|EFD86197.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55] gi|328537774|gb|EGF63974.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3] Length = 203 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETAGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVASLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPAGPTADDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + N +IR ALRA Sbjct: 181 VSKIARPDAN---SETLIREALRA 201 >gi|300362258|ref|ZP_07058434.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus gasseri JV-V03] gi|300353249|gb|EFJ69121.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus gasseri JV-V03] Length = 192 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 18/195 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV++DV G+ Y I CP + T++VE +R I L Sbjct: 1 MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPT---PYSYQENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 AS+I+ +LKGK S V D+S PS +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYVKKSTVAADLS------------PSLQ-DAVLALVALGYTQKEVD 164 Query: 179 TAVVSVLKKEKNIAD 193 + K +N AD Sbjct: 165 RITPKLAKLPENTAD 179 >gi|71065275|ref|YP_264002.1| Holliday junction DNA helicase RuvA [Psychrobacter arcticus 273-4] gi|90135656|sp|Q4FTU0|RUVA_PSYA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71038260|gb|AAZ18568.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter arcticus 273-4] Length = 207 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ G+ Y I P+ + C ++ + +++ H+R+D Sbjct: 1 MIGLISGQVQYLMAPTACVMTTSGIGYDIELPLPSF-CQLRLNEQASIWTHFHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R F L + GVGA++A+ +LS ++A EL + ++ + +IPGI K Sbjct: 60 LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQESETALTRIPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNK--EQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK K + ++ D S + + A I + S AL++LGY + +A Sbjct: 120 TAQRLLIELKDKLKN----IEVDNSNLEFAIQPAPISAEDSIIAEVEGALMSLGYKEKEA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 A+ + + AD +++ L+ Sbjct: 176 QQAIKAAKSNGETFADTQSLLKATLQ 201 >gi|283832740|ref|ZP_06352481.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC 29220] gi|291072423|gb|EFE10532.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC 29220] Length = 203 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 15/210 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------NAISALVNLGYGQ 174 A R++ E+K + L + + + + + P+ + A++ALV LGY Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADL------VLTSPASPVTDDAEQEAVAALVALGYKP 174 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ V + + + A +IR ALRA Sbjct: 175 QEASRMVSKIARPD---ASSETLIREALRA 201 >gi|220904537|ref|YP_002479849.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868836|gb|ACL49171.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 204 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 7/192 (3%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + +LI GV Y + P TLS L G+ L+ +R+D + Sbjct: 1 MIAYLEGRLAETWGNTCLLITENGVGYAVALPAHTLSVLPGRGEHLALYTSLAVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F +L S+ VGAR A+ +LS +L + ++ + ++ GI K Sbjct: 61 LFGFATFEERQTFEVLISISKVGARTALSILSIYRPEDLRRIVFEEDVMALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A + ELK K + + V Q + E+ S + + L NLGY +D+ Sbjct: 121 TAQHVFLELKYK-LKVDDVPQAAVLASTGERPG-----SVFRDVLDGLANLGYAEDECAP 174 Query: 180 AVVSVLKKEKNI 191 V +L +E ++ Sbjct: 175 MVKKLLHEEPDL 186 >gi|24113211|ref|NP_707721.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 301] gi|110805805|ref|YP_689325.1| Holliday junction DNA helicase RuvA [Shigella flexneri 5 str. 8401] gi|44888467|sp|Q83KR4|RUVA_SHIFL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123342783|sp|Q0T3U5|RUVA_SHIF8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24052207|gb|AAN43428.1| Holliday junction helicase subunit B [Shigella flexneri 2a str. 301] gi|110615353|gb|ABF04020.1| Holliday junction helicase [Shigella flexneri 5 str. 8401] Length = 203 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGPLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + + +IR ALRA Sbjct: 181 VSKIARPDTS---SETLIREALRA 201 >gi|260598336|ref|YP_003210907.1| Holliday junction DNA helicase RuvA [Cronobacter turicensis z3032] gi|260217513|emb|CBA31691.1| Holliday junction ATP-dependent DNA helicase ruvA [Cronobacter turicensis z3032] Length = 203 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y I+ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLEAGGVGYEIHMPMTCFYELPETGKEAVVFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + ++ A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + + A +IR ALRA Sbjct: 181 VSKVAQPD---ASSETLIREALRA 201 >gi|56963319|ref|YP_175050.1| Holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16] gi|81366439|sp|Q5WHR6|RUVA_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56909562|dbj|BAD64089.1| holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16] Length = 199 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 97/176 (55%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETH--MRQD 56 MI IKGN+ + Y++++ G+ + IYC P R ++ L + + V TH +R+D Sbjct: 1 MIDYIKGNLVAVEPAYLVVEANGIGFQIYCANPYRFINDLNR-----EVVVPTHHYVRED 55 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 RLFGF + +R F L +V G+G + A+ +L+ +++ +I ++ ++ + PG+ Sbjct: 56 SQRLFGFTTRTERLLFEKLLNVSGIGPKGALAILASGEPEDIIHAIEQEDEALLVRFPGV 115 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 K A +I+ +LKGK ++ +++ + +K+Q + P +A+ AL LGY Sbjct: 116 GKKTARQIILDLKGKLDDMAPMLEP-AAGADKQQKN----PQLE-DALEALRALGY 165 >gi|82776447|ref|YP_402796.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae Sd197] gi|309789257|ref|ZP_07683850.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617] gi|90135814|sp|Q32HA0|RUVA_SHIDS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81240595|gb|ABB61305.1| Holliday junction helicase subunit B [Shigella dysenteriae Sd197] gi|308923011|gb|EFP68525.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617] Length = 203 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + +IR ALRA Sbjct: 181 VSKIARPD---VSSETLIREALRA 201 >gi|118617340|ref|YP_905672.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99] gi|183982124|ref|YP_001850415.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M] gi|166230572|sp|A0PPD2|RUVA_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560107|sp|B2HN62|RUVA_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118569450|gb|ABL04201.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99] gi|183175450|gb|ACC40560.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M] Length = 197 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 12/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MISSLRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTDARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ R F+ L SV GVG R+AM LS A L +++ + + ++PGI + Sbjct: 60 YGFVDGETRDLFLTLLSVSGVGPRLAMATLSVHDANGLRQALADGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S VN H P + ALV LG+ QA A Sbjct: 120 AERMVVELRDKVGPAGSAATA--PAVN---GHTVRAP-----VVEALVGLGFAAKQAEEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 VL + A S +R AL Sbjct: 170 TDKVLAGDGE-ATTSSALRAAL 190 >gi|171742914|ref|ZP_02918721.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC 27678] gi|171278528|gb|EDT46189.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC 27678] Length = 202 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 20/209 (9%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 + G +E + LI+V GV Y P L+ + G ++ ++ QD I LFGFL Sbjct: 2 LHGRVESVDMSSALIEVGGVGYETRMPSADLASM-HAGQEVKVYTSLNVSQDAITLFGFL 60 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K A +I Sbjct: 61 TPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKGAQKI 120 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQATTAVV 182 + ELKG +I LS + + A + S P + + + L++LG+ Q A AV Sbjct: 121 ILELKG-SIDLSQI---------ETAASVISRPEDTGSEQVVEGLISLGWRQQDALHAVQ 170 Query: 183 SVLKKEKNIA------DDSQIIRLALRAI 205 V + +IA D ++++LAL ++ Sbjct: 171 EVCRS-NDIATPLSNEDVPRVLKLALTSL 198 >gi|209517513|ref|ZP_03266353.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160] gi|209502046|gb|EEA02062.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160] Length = 193 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 21/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSSGERIVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + + A + ++AL+ LGY + +A A Sbjct: 121 AERLLL-------ELKGKLGADLGAMAGAASAS----DHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAIS 206 + KN+ S+ I+LAL+A+S Sbjct: 170 I-------KNVPAGTGVSEGIKLALKALS 191 >gi|311748060|ref|ZP_07721845.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1] gi|126575044|gb|EAZ79402.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1] Length = 199 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 12/192 (6%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YVLIDV G+ Y + ++T S + K + L H+++D L+GF + +++ F+LL Sbjct: 16 YVLIDVGGIGYHVKISLQTYSQI-KDEEQIKLLTYLHIKEDAHTLYGFKNADEKRLFLLL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK---GKA 132 S+ GVG + +LS ++ E+ +SI+ + I + GI K A RI+ ELK GKA Sbjct: 75 ISINGVGPNTGLMILSSLSTEEIEQSILSGDVATIQHVKGIGAKTAQRIILELKDKVGKA 134 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 D S + + + + + A+ AL+ LG+ + A + +VLKK Sbjct: 135 T--------DSSSGDSQVGFLNAHNNLREEALKALITLGFPKTAAEKNIRAVLKKTTGEI 186 Query: 193 DDSQIIRLALRA 204 ++I+ +L+ Sbjct: 187 SLEELIKASLKT 198 >gi|218548578|ref|YP_002382369.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ATCC 35469] gi|226725445|sp|B7LPI3|RUVA_ESCF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218356119|emb|CAQ88736.1| component of RuvABC resolvasome, regulatory subunit [Escherichia fergusonii ATCC 35469] Length = 203 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR AL A Sbjct: 181 VSKIARPD---ASSETLIREALHA 201 >gi|269103018|ref|ZP_06155715.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp. damselae CIP 102761] gi|268162916|gb|EEZ41412.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp. damselae CIP 102761] Length = 187 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 7/187 (3%) Query: 23 GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82 G+ Y + P+ L ++G +F +R+D L+GF +R+ F + GVG Sbjct: 3 GIGYEVQMPMSCFYELPEVGQEAIIFTHFVVREDAQLLYGFNKKSERELFREVIKANGVG 62 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS----V 138 ++ + +LS +TA++ V S+ ++ + +IPG+ K A R++ E+K + Sbjct: 63 PKLGLAILSAMTASQFVLSVEQEDITTLVKIPGVGKKTAERLLVEMKDRLKGWGEGDLFT 122 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 QD + N + S A+SALV LGY QA+ V V + E + II Sbjct: 123 PAQDTAASNAPIQNPSSQARAEDEAVSALVALGYKPQQASKVVSQVAQPEMS---SETII 179 Query: 199 RLALRAI 205 R ALR++ Sbjct: 180 REALRSM 186 >gi|226952125|ref|ZP_03822589.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC 27244] gi|226837134|gb|EEH69517.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC 27244] Length = 201 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ L+ +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A R+M EL+ + +L++ N A I M + + A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKALANSTG---GTTNTAAAQIQFMANSPVAEAEAALQSLGYKPAEAQK 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V AD IIR AL+++ Sbjct: 177 AVAAVKADYTESAD---IIRAALKSM 199 >gi|237731899|ref|ZP_04562380.1| holliday junction helicase subunit B [Citrobacter sp. 30_2] gi|226907438|gb|EEH93356.1| holliday junction helicase subunit B [Citrobacter sp. 30_2] Length = 203 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDTEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|317128202|ref|YP_004094484.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM 2522] gi|315473150|gb|ADU29753.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM 2522] Length = 204 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 28/215 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 MI + G + + + V ++V V Y+++C P R I + T++ H+R+D I Sbjct: 1 MIESLTGVVSNIEIESVTLNVHDVGYLVFCANPFRYEE---NINEKVTIYTYQHVREDAI 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF + +R+ F L V G+G + A+ +L+ T +V++I +N K + + PG+ Sbjct: 58 KLYGFKNRDERKLFEKLLQVSGIGPKGALAILATGEPTLVVQAIEAENEKFLVKFPGVGK 117 Query: 119 KIASRIMTELKGKAISLSS----------VVQQDMSCVNKEQAHICSMPSFAINAISALV 168 K A +I+ +LKGK + + DM N E A+ AL Sbjct: 118 KTARQIILDLKGKLVDFLQESGGEDTKLIAIDDDMQLENYELEE----------ALEALK 167 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 LGY D+ V+ LK K D I++AL+ Sbjct: 168 ALGY-VDREINKVLPKLKDTKETTDG--YIKIALK 199 >gi|89889458|ref|ZP_01200969.1| Holliday junction DNA helicase ruvA [Flavobacteria bacterium BBFL7] gi|89517731|gb|EAS20387.1| Holliday junction DNA helicase ruvA [Flavobacteria bacterium BBFL7] Length = 193 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V+ID GV Y + + T S + + G+ LF +R+D RL Sbjct: 1 MIAQLQGKLVEKNLTDVVIDCGGVGYFVEISLHTYSLIPE-GELIKLFTFMQVREDSQRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R+ F LL SV G+GA A +LS + ++ ++I + + I + GI K Sbjct: 60 FGFMEKSEREVFKLLLSVSGIGASTARTMLSSLEPRQIAQAIASGDVRTIQSVKGIGAKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + E + S + A+SAL LGY + QA Sbjct: 120 AQRVILDLKDKI----------LQVLEGEDISLHSSNTGRDEALSALETLGYLRKQAQKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L E + + ++ +I+ AL+ + Sbjct: 170 VDKILASEPDASVET-LIKGALKQL 193 >gi|15605230|ref|NP_220016.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis D/UW-3/CX] gi|6685940|sp|O84509|RUVA_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3328938|gb|AAC68102.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX] gi|296436962|gb|ADH19132.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11222] gi|297748631|gb|ADI51177.1| RuvA [Chlamydia trachomatis D-EC] gi|297749511|gb|ADI52189.1| RuvA [Chlamydia trachomatis D-LC] Length = 200 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176 A ++M +LK K +L + ++ V A+ SF I AL+NLG+ + D+ Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 T V L +E ++A+ ++ +ALR Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198 >gi|157830735|pdb|1CUK|A Chain A, Escherichia Coli Ruva Protein At Ph 4.9 And Room Temperature gi|581226|emb|CAA30119.1| unnamed protein product [Escherichia coli] Length = 203 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ LV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVARLVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|269967685|ref|ZP_06181735.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 40B] gi|269827772|gb|EEZ82056.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 40B] Length = 234 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 21/214 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 32 VIGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 91 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TAT+ V + ++ + ++PG+ K Sbjct: 92 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 151 Query: 121 ASRIMTELKGKA---------ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+K + + D S + AISAL+ LG Sbjct: 152 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSSATSNNAEE---------EAISALLALG 202 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 Y QA+ V + K + + Q+IR AL+++ Sbjct: 203 YKPTQASKVVSQIAKPDMS---SEQMIREALKSM 233 >gi|184159149|ref|YP_001847488.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ACICU] gi|332875977|ref|ZP_08443763.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6014059] gi|229470530|sp|B2HWT2|RUVA_ACIBC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183210743|gb|ACC58141.1| Holliday junction resolvasome, DNA-binding subunit [Acinetobacter baumannii ACICU] gi|322509062|gb|ADX04516.1| ruvA [Acinetobacter baumannii 1656-2] gi|323519043|gb|ADX93424.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii TCDC-AB0715] gi|332735843|gb|EGJ66884.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6014059] Length = 199 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS + LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLNVELLVHTIEHDDVNTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + ++ Q S Q S A A +AL +LGY +A A Sbjct: 120 AERLMIELRDR---FKTLAQGTSSAAALPQIQFVSNSPVA-EAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|167751984|ref|ZP_02424111.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216] gi|167660225|gb|EDS04355.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216] Length = 194 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 17/202 (8%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 + G I L + ++DV GV Y + ++T S + + D LFV +R+D L+GF Sbjct: 5 LSGTISELAPTHAVLDVGGVGYFLQISLQTYSEI-EHSDRVKLFVHYVVREDAQLLYGFA 63 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S +R+ F L SV GVG A +LS + EL I +N+ ++ + G+ +K A +I Sbjct: 64 SKAERELFRHLISVSGVGGNTARMILSTYSPRELQGIIATENAVLLKNVKGLGLKTAQKI 123 Query: 125 MTELKGKAISL---SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 + EL GK L V ++ + E+ A++ALV LG+G+ A V Sbjct: 124 IVELSGKMAGLGLTGDTVTAPVAGGDYEE------------ALAALVMLGFGK-AAADKV 170 Query: 182 VSVLKKEKNIADDSQIIRLALR 203 V ++ +E A ++R++L+ Sbjct: 171 VKIVARENPGASVEDLVRMSLK 192 >gi|145220343|ref|YP_001131052.1| Holliday junction DNA helicase RuvA [Prosthecochloris vibrioformis DSM 265] gi|189045761|sp|A4SGE1|RUVA_PROVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145206507|gb|ABP37550.1| Holliday junction DNA helicase subunit RuvA [Chlorobium phaeovibrioides DSM 265] Length = 200 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 7/190 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + +++V G+ Y T L ++G L+ +R+D ++L Sbjct: 1 MYAYFRGRLVSCLPEEAVLEVSGIAYRFLVSAGTARQLPEVGTETILYTHLSVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F LL GVG ++A+ VLS + E+ E+I+ + + I G+ K Sbjct: 61 YGFATEEEKQLFRLLLLTSGVGPKLALAVLSGMAVPEVHEAILANAPERLFGITGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + L+ V ++ V ++ F +A++AL+ LG+ + A A Sbjct: 121 AARIILELRDKILKLAP-VGSAVASVAADRG------GFREDAVNALMTLGFPRPVANQA 173 Query: 181 VVSVLKKEKN 190 V L+ E + Sbjct: 174 VGCALEPEPD 183 >gi|213649641|ref|ZP_03379694.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 203 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 25/215 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 A R++ E+K + A+ L + + EQ A++ALV Sbjct: 121 AERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQ-----------EAVAALVA 169 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 LGY +A+ V + + + A +IR ALRA Sbjct: 170 LGYKPQEASRMVSKIARPD---ASSETLIRDALRA 201 >gi|269216143|ref|ZP_06159997.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122] gi|269130402|gb|EEZ61480.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122] Length = 196 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + G + +DV GV + + LS L G+ + +R+D + L Sbjct: 1 MIAFLNGVVAGKNQSTAFVDVGGVGFAVGMSANDLSRLPPTGERVLIHTYFAVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS + F L V VG ++A+ LS A+E + +++ ++ ++++PGI K+ Sbjct: 61 YGFLSLESKSLFEKLIGVSSVGPKIALAALSTFKASEFIAAVLSGDAAAVSKVPGIGKKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELKG SL+ D+ S EQA A AL+ +G+ +A Sbjct: 121 AQRIILELKG---SLADASVDDLFSTKAGEQAARLQ------GAKEALLAMGFTSAEAD- 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V++ + + DS +++ ALR Sbjct: 171 --VALKDAPETLVTDSALLQYALR 192 >gi|296137136|ref|YP_003644378.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12] gi|295797258|gb|ADG32048.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12] Length = 190 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 72/126 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ TL L +G TL + T +R+D L Sbjct: 1 MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAVGHAVTLLIHTVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+G R+A+ VLS ++ +E+ +++ Q++ ++PGI K Sbjct: 61 YGFATAGERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120 Query: 121 ASRIMT 126 A R++ Sbjct: 121 AERLLL 126 >gi|223986042|ref|ZP_03636071.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM 12042] gi|223961992|gb|EEF66475.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM 12042] Length = 193 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + D+++I+ QG+ Y ++ R + ++ +F H+R+D+ L Sbjct: 1 MIAMIKGTVFAVGLDWIIIENQGIGYKVFFS-RPEAV--RLNQEVRVFTYQHVREDEFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ L SV+G+G + AM +L+ T ++V+ I + + ++PGI K Sbjct: 58 FGFLSMEEQDLFVKLISVKGLGPKTAMNMLAAATYQQMVQMIEQGDVAALKKMPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK V +E A S + +A+ AL LGY Q + + Sbjct: 118 ASQIILDLKGK-------------LVREETAEGKSSQAIE-DALEALKALGYKQSE-LSG 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V+++ + D + ++L L+ + Sbjct: 163 LSKVMREHPDKTTD-EYVKLGLQHL 186 >gi|307545151|ref|YP_003897630.1| Holliday junction DNA helicase motor protein [Halomonas elongata DSM 2581] gi|307217175|emb|CBV42445.1| Holliday junction DNA helicase motor protein [Halomonas elongata DSM 2581] Length = 203 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 3/179 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + + TL L G+ +L+ +R D L Sbjct: 1 MIGRLRGTLLEKQPPWLVVDVAGVGYELEASMTTLVALPGCGEDVSLYTHLSVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G ++A+ +LS + + ++ + K + ++PG+ K Sbjct: 61 YGFAREQERSLFRALIKVNGIGPKLALAILSGMDEDAFIRCVMDDDIKALTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQAT 178 A R++ E++ + Q +S + P + +A +ALV+LGY +AT Sbjct: 121 AERLVIEMRDRFPHWQDSTQ--VSAGDAGMGATTPSPKDPLADAEAALVSLGYKPSEAT 177 >gi|37526027|ref|NP_929371.1| Holliday junction DNA helicase motor protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|44888380|sp|Q7N548|RUVA_PHOLL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|36785457|emb|CAE14404.1| Holliday junction DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 205 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L G LF +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDAGQEAVLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEREAIVSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N S A +ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPATAKQTTSDADSEAEAAAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V + K AD +IR ALRA+ Sbjct: 181 RMVSKIAKPG---ADCETLIREALRAV 204 >gi|298252762|ref|ZP_06976556.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis 5-1] gi|297533126|gb|EFH72010.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis 5-1] Length = 209 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 12/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LI V GV Y Y P + LS L + G ++ + QD + L Sbjct: 1 MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ +Q V G+G +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG SL S + D S + Q++ + S I LV+LG+ Q A A Sbjct: 120 AQKIILELKG---SLDSSILAD-SSNDSTQSNKQIVDSSVQCVIEGLVSLGWRQVDAQRA 175 Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAI 205 V V E NI AD ++R+AL ++ Sbjct: 176 VEQVC-AENNISIPISDADLPNVLRMALASL 205 >gi|171915820|ref|ZP_02931290.1| Holliday junction DNA helicase motor protein [Verrucomicrobium spinosum DSM 4136] Length = 203 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ + + +DV GV Y+ P+ T L L ++ + L Sbjct: 1 MIAYLRGHLVEALPNQLTVDVNGVGYLCLVPLSTYDRLAGTQGEVRLLTHLNITERDHTL 60 Query: 61 FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGF + +R F +L+ V G+G ++A+ VLS + + +++I + +++I G+ K Sbjct: 61 FGFATAEERDLFRLLINRVSGIGPKMALAVLSGMAVGDFKDNVIRNDVTALSRISGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA--INAISALVNLGYGQDQA 177 A RI+ ELK K + + Q S N + P+ A +A+ AL+ LG+ Q +A Sbjct: 121 TAERIVLELKDK-VGIVDTWQAARSTGNS----LVPDPTQAAQTDAVLALIALGFKQTEA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 V ++KK + ++IR ALR Sbjct: 176 QKTVQDLVKKAGGVVSADKLIRDALR 201 >gi|296170845|ref|ZP_06852406.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894501|gb|EFG74242.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 197 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + G+ D+ +I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVLGVALDHAVIEAAGVGYRVNATPSTLATL-RTGTEARLITAMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA--QIPGISM 118 +GF R F+ L +V GVG R+AM L+ A L + +L + V A ++PGI Sbjct: 60 YGFTDAETRDLFLTLLTVSGVGPRLAMATLAVHDAAALRQ--VLHDGDVTALTRVPGIGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 + A R++ EL+ K + ++ S VN H P + ALV LG+ QA Sbjct: 118 RGAERMVLELRDKVGAAAAAGG--ASVVN---GHAVRGP-----VVEALVGLGFAVKQAE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202 A VL E++ A S +R AL Sbjct: 168 EATDKVLATEQD-ATTSGALRAAL 190 >gi|294674697|ref|YP_003575313.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23] gi|294472323|gb|ADE81712.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23] Length = 200 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG + L ++ GV Y + + T S + GK L+V +R+D Sbjct: 1 MIEYIKGELTELTPALATVEACGVGYGLNISLNTFSAIQGK--KEVKLYVYEAIREDAHV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF++ +R+ F+LL +V GVGA A +LS ++ EL +I + N+K+I I GI Sbjct: 59 LFGFVNKKEREMFLLLITVSGVGANTARMMLSGMSVAELCNAISMGNAKLIQGIKGIGKM 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +L+ K ++L + ++ + A + + AI+AL LG+ Sbjct: 119 TAQRIIVDLRDKIVTLG--ISDEIPAGGQIAAPVNN--QVKDEAIAALTMLGFAPAPTQK 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L+ N A ++++LAL+ I Sbjct: 175 VVLQILQANPN-APVEEVVKLALKQI 199 >gi|237738311|ref|ZP_04568792.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC 9817] gi|229420191|gb|EEO35238.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC 9817] Length = 196 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 13/183 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG +E DY+ +DV GV Y + +R + K G+ L++ ++++D +L Sbjct: 1 MFEYLKGKVEYKKPDYLALDVNGVGYKVNISLRVYDKI-KTGESVRLYIFNYIKEDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R F +L V+GVG + + ++S +L + + + + ++P + K Sbjct: 60 IGFLEERERNLFEMLLGVKGVGVSLTLSIMSTFDVEQLRKIVAENDYATLKRVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--ISALVNLGYGQDQAT 178 A +++ +LKGK ++ ++ QD + SFAI AL LGY Q + Sbjct: 120 AQQVILDLKGKLKAIGNLFTQDENL----------FESFAIEDELYEALEALGYSQKEIN 169 Query: 179 TAV 181 + V Sbjct: 170 SLV 172 >gi|16760845|ref|NP_456462.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765237|ref|NP_460852.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141463|ref|NP_804805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413186|ref|YP_150261.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167994196|ref|ZP_02575288.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234044|ref|ZP_02659102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168241523|ref|ZP_02666455.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259832|ref|ZP_02681805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462574|ref|ZP_02696505.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820718|ref|ZP_02832718.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446097|ref|YP_002041160.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451798|ref|YP_002045948.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471309|ref|ZP_03077293.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197247981|ref|YP_002146128.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263523|ref|ZP_03163597.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362112|ref|YP_002141749.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242475|ref|YP_002215191.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389612|ref|ZP_03216223.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205352399|ref|YP_002226200.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856584|ref|YP_002243235.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213426405|ref|ZP_03359155.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580455|ref|ZP_03362281.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609154|ref|ZP_03368980.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213859991|ref|ZP_03385695.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912045|ref|ZP_04655882.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824023|ref|ZP_06543621.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039573|sp|P66747|RUVA_SALTI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042202|sp|P66746|RUVA_SALTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81361945|sp|Q5PN01|RUVA_SALPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698738|sp|B5F3J6|RUVA_SALA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698739|sp|B5FSN7|RUVA_SALDC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698740|sp|B5R1V8|RUVA_SALEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698741|sp|B5R8E2|RUVA_SALG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560123|sp|B4T7Z3|RUVA_SALHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560124|sp|B4SVE5|RUVA_SALNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560125|sp|B5BH60|RUVA_SALPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|25299990|pir||AC0743 Holliday junction DNA helicase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420431|gb|AAL20811.1| Holliday junction helicase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503142|emb|CAD05646.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhi] gi|29137090|gb|AAO68654.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127443|gb|AAV76949.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404760|gb|ACF64982.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410102|gb|ACF70321.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457673|gb|EDX46512.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634327|gb|EDX52679.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093589|emb|CAR59052.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211684|gb|ACH49081.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241778|gb|EDY24398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936991|gb|ACH74324.1| holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602057|gb|EDZ00603.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205272180|emb|CAR37038.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205327892|gb|EDZ14656.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331994|gb|EDZ18758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339435|gb|EDZ26199.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342743|gb|EDZ29507.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350710|gb|EDZ37341.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708387|emb|CAR32691.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247066|emb|CBG24885.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993877|gb|ACY88762.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158416|emb|CBW17923.1| Holliday junction DNA helicase ruvA [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912889|dbj|BAJ36863.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085488|emb|CBY95269.1| Holliday junction ATP-dependent DNA helicase ruvA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224538|gb|EFX49601.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130179|gb|ADX17609.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627451|gb|EGE33794.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988789|gb|AEF07772.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 203 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 25/215 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 A R++ E+K + A+ L + + EQ A++ALV Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQ-----------EAVAALVA 169 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 LGY +A+ V + + + A +IR ALRA Sbjct: 170 LGYKPQEASRMVSKIARPD---ASSETLIRDALRA 201 >gi|327398312|ref|YP_004339181.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima DSM 10411] gi|327180941|gb|AEA33122.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima DSM 10411] Length = 189 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 20/188 (10%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 +IDV G+ I P+ T + L +IG+ CTL E + + ++L+GF + ++ F L+ Sbjct: 18 VIDVNGLMLDISIPLSTFNKLPEIGEECTLLCELVIGEKSLKLYGFSTKEEKNLFNSLRK 77 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 + +GA+ A+ +LS I+ + +I QN +++ +IPGI K A I+ E K Sbjct: 78 ISKIGAQTAISILSNISIEQFYRAIEEQNKELLTKIPGIGKKTAISIIVEFSSK------ 131 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 + + D P +AI+ L LG+ Q A+ V + + + NI + + Sbjct: 132 IPKTD-------------NPPIVDDAITTLQGLGFSQSDASKIVNEIYRNKPNITIE-DL 177 Query: 198 IRLALRAI 205 I+ +L+ I Sbjct: 178 IKESLKNI 185 >gi|307299266|ref|ZP_07579067.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium mesG1.Ag.4.2] gi|306915062|gb|EFN45448.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium mesG1.Ag.4.2] Length = 197 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + + E ++I V G+ + + C T+S L D L + + L Sbjct: 1 MLEGIEGRVREIRETEIVIQVGGLFFKVNCTPNTISKLPVEKDVYLLTFMAYSQDRPPEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F +L +G + AM +LS + + + I +N+ ++ +PGI K Sbjct: 61 YGFYDQEEKELFNILLRASKIGPKSAMKILSSASPSRIKHIISTKNAAELSSLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E L+S+V D S + E+ S A++AL +LG+ ++Q+ Sbjct: 121 AERMIVE-------LASLV--DTSGITDEETIPGVERSHGEEAVAALTSLGFDENQSRKV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +LK E+ I D +I+ AL+ I Sbjct: 172 VIEILKAEREI-DTHDLIKKALKEI 195 >gi|318041282|ref|ZP_07973238.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0101] Length = 220 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 21/221 (9%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + ++ +L+ GV Y ++ P R LG+ G +L + +R+D Sbjct: 1 MIGWLQGQLADRWQQASRCGLLLVCGGVGYEVHLPRRQWERLGETGTELSLHIHQVIRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R F L +V GVG ++A+G+L +++ ELV +I+ + +++ Q PG+ Sbjct: 61 AWTLYGFASRAERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRLLTQAPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISA--------- 166 + A R+ EL+ + + ++ S N E ++P S + A+ + Sbjct: 121 GKRTAERLAVELR------TRLQERYGSVANPEDTADLALPASGSAEALPSAVRDEVNLT 174 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAIS 206 L LGY + A+ +V E+++ + +R LR +S Sbjct: 175 LTALGYEALEINRALRAVATTEEDLGQGADAWLRECLRWLS 215 >gi|312139494|ref|YP_004006830.1| holliday junction DNA helicase ruva [Rhodococcus equi 103S] gi|311888833|emb|CBH48145.1| Holliday junction DNA helicase RuvA [Rhodococcus equi 103S] Length = 201 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + GD L +R+D + L Sbjct: 1 MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM +L+ + L +++ N + ++PGI + Sbjct: 60 YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ V D+ S + AL LG+ + A A Sbjct: 120 AERMVVELRDKVEAVA--VTGDLPGAGA----ATSASVVRDQVVEALTGLGFKLEHAEKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 +V+ + A S ++R AL Sbjct: 174 TDTVVAADPE-APTSTVLRSAL 194 >gi|294341429|emb|CAZ89846.1| Holliday junction ATP-dependent DNA helicase ruvA [Thiomonas sp. 3As] Length = 190 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 71/126 (56%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ TL L G TL + T +R+D L Sbjct: 1 MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAAGHAVTLLIHTVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+G R+A+ VLS ++ +E+ +++ Q++ ++PGI K Sbjct: 61 YGFATAAERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120 Query: 121 ASRIMT 126 A R++ Sbjct: 121 AERLLL 126 >gi|29833376|ref|NP_828010.1| Holliday junction DNA helicase RuvA [Streptomyces avermitilis MA-4680] gi|44888446|sp|Q820F4|RUVA_STRAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29610499|dbj|BAC74545.1| putative Holliday junction DNA helicase subunit B [Streptomyces avermitilis MA-4680] Length = 203 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 17/176 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V G+ + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RMGREAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVSTGDEKALVAVPGIGKKG 119 Query: 121 ASRIMTELK---GKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ ELK G+ + + + ++ +EQ H +AL+ LGY Sbjct: 120 AQKLLLELKDRLGEPLGTGGPAIGRAVTTGWREQLH------------AALIGLGY 163 >gi|218133570|ref|ZP_03462374.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC 43243] gi|217990945|gb|EEC56951.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC 43243] Length = 203 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI IKG + + E ++++ G+ I P + + G + ++++D + Sbjct: 1 MISYIKGELTEVSETSIVVETSSGIGMNIIVPQTVIDKMPSCGSMVKIHTYLNVKEDSMT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF++ D F LL +V G+G + A+ +LS IT +L +++ + K I++ PGI K Sbjct: 61 LYGFINREDVDIFRLLITVNGIGPKGALAILSTITPDDLRFAVLSDDVKAISRAPGIGAK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177 A R++ ELK K + L + +S + +P+ + + ALV LGYG+ +A Sbjct: 121 TAQRMIIELKDK-LKLEEAFEIRLS-----HEEVDDLPAGDARNDTVQALVALGYGRSEA 174 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V + D Q+I+ AL+ ++ Sbjct: 175 ARAVNMVDGADS--MDSEQLIKAALKKLA 201 >gi|212715818|ref|ZP_03323946.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM 16992] gi|212661185|gb|EEB21760.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM 16992] Length = 210 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G ++ + +I+V GV Y P L+ + G ++ ++ QD I L Sbjct: 6 MIGMLHGQVDSIDAASAIIEVGGVGYETRMPSADLASM-HAGQTVKVYTSLNVSQDAITL 64 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 65 YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLARAVADGDATALAKAPGLGKKG 124 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG +I LS + + E + + + L++LG+ Q A A Sbjct: 125 AQKIILELKG-SIDLSQIEGASPETRSTED-------TGSEQVVEGLMSLGWRQQDAVHA 176 Query: 181 VVSVLKKEK---NIADD--SQIIRLALRAI 205 V V + + DD +++RLAL ++ Sbjct: 177 VQEVCESNHIDIPLGDDDVPRVLRLALASL 206 >gi|294141122|ref|YP_003557100.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12] gi|293327591|dbj|BAJ02322.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12] Length = 205 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 8/191 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGLLIEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +T+ E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTSAEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A R++ E++ K L S+++ + P+ +N AI+ L+ LGY Sbjct: 121 AERLLIEMRDK---LKSLMEASAGSEREFMLKTNYTPTKIVNTAEEDAIAVLLALGYKSA 177 Query: 176 QATTAVVSVLK 186 QA+ +V + K Sbjct: 178 QASKSVSAAYK 188 >gi|282899464|ref|ZP_06307430.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii CS-505] gi|281195621|gb|EFA70552.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii CS-505] Length = 214 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 1 MIGKIKGNIEGL----YEDYVL-IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ ++L ++V G+ Y +Y P R + L GD +F +R+ Sbjct: 1 MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVAHIFTHYQIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+G +A+ ++ + ELV++II N+ ++ Q PG Sbjct: 61 ELPILYGFSSPAERDLFRHLLSVTGIGTAMAIALIDTLELPELVQAIISGNTTMLVQTPG 120 Query: 116 ISMKIASRIMTELKGKAI 133 + K A R+ ELKGK + Sbjct: 121 VGKKTAERLCLELKGKLV 138 >gi|227825064|ref|ZP_03989896.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21] gi|226905563|gb|EEH91481.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21] Length = 201 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 12/179 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK--IGDFCTLFVETHMRQDQI 58 MIG IKG ++ + +Y ++ QGV Y IY S LG+ + D ++ +R+D + Sbjct: 1 MIGFIKGRVDTIGSNYAFVETQGVGYRIYM---NTSDLGRMVLDDKVKVYTYLAVREDAL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFLS F L +V G+G +VA G+LS + + +I ++ K + ++PGI Sbjct: 58 TLYGFLSQEAYGLFTKLITVSGIGPKVAQGILSASKVDDFLLAIKNRDVKFLTKLPGIGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQ 176 K A R++ ELK + + + + E P+ A+ + AL +LGY Q++ Sbjct: 118 KTAERMLLELKDLTGPEGPLPESNGGFLAPEG------PASALTETMEALASLGYTQNE 170 >gi|161502989|ref|YP_001570101.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864336|gb|ABX20959.1| hypothetical protein SARI_01051 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 228 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 25/215 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 26 VIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPESGKEAIIFTHFVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 86 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 145 Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 A R++ E+K + A+ L + + + EQ A++ALV Sbjct: 146 AERLIVEMKDRFKGLHGDLFTPAVDLVLMSPASPTSEDAEQ-----------EAVAALVA 194 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 LGY +A+ V V + A +IR ALRA Sbjct: 195 LGYKPQEASRMVSKVAHSD---ASSETLIRDALRA 226 >gi|62180473|ref|YP_216890.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613551|ref|YP_001587516.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224583600|ref|YP_002637398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75482773|sp|Q57NA2|RUVA_SALCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045767|sp|A9MUX3|RUVA_SALPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767385|sp|C0Q2F4|RUVA_SALPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|62128106|gb|AAX65809.1| Holliday junction helicase subunit A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362915|gb|ABX66683.1| hypothetical protein SPAB_01271 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224468127|gb|ACN45957.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714948|gb|EFZ06519.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 203 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 25/215 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 A R++ E+K + A+ L + + EQ A++ALV Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQ-----------EAVAALVA 169 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 LGY +A+ V + + + A +IR ALRA Sbjct: 170 LGYKPQEASRMVNKIARPD---ASSETLIRDALRA 201 >gi|262373115|ref|ZP_06066394.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205] gi|262313140|gb|EEY94225.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205] Length = 201 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ L+ +I + + ++PG+ K Sbjct: 60 YGFSEAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +LS + + + P A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKALSQSANSTSQTTTSQIQFMSNSP--VAEAEAALQSLGYKPIEAQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 178 VAAVKADYTESAD---IIRAALKSM 199 >gi|28493235|ref|NP_787396.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str. Twist] gi|28476276|gb|AAO44365.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str. Twist] Length = 222 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 112/206 (54%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +I + G +E + V++++ G+ +++ P S ++ L+ +R+D + L Sbjct: 29 LIASLSGLLEAVRPGSVVVNMHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S L+ F L ++ GVG RVA+ +LS +T E+ +++ + K + ++ G+ K+ Sbjct: 86 YGFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKL 145 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +L GK L+SV + N++Q + + AL+ LG+ + ++ A Sbjct: 146 AGTIVLQLAGK---LTSVPLE-----NRKQEQAVDRSA---EIVQALIGLGWQRQESAAA 194 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V SVL+K++++ +I+R ALR ++ Sbjct: 195 VESVLEKDQSLT-MPEILRNALRYLA 219 >gi|50842639|ref|YP_055866.1| holliday junction DNA helicase RuvA [Propionibacterium acnes KPA171202] gi|282853888|ref|ZP_06263225.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139] gi|81611698|sp|Q6A8K8|RUVA_PROAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|50840241|gb|AAT82908.1| holliday junction DNA helicase RuvA [Propionibacterium acnes KPA171202] gi|282583341|gb|EFB88721.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139] Length = 201 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G + +V++D GV + CP T + +I +L +R++ + L Sbjct: 1 MISHFSGTVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K Sbjct: 60 YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ ELK K +L+ H+ + + LV LG+ A A Sbjct: 120 AAKMILELKDKVAALAP-----RGASASGATHVAA--PWREQVAEGLVGLGWSTKDAEKA 172 Query: 181 V--VSVLKKEKNIADDSQIIRLALRAIS 206 V V LK+ ++R ALR+++ Sbjct: 173 VDKVVALKEADPAMSIGNLMRAALRSLA 200 >gi|261343863|ref|ZP_05971508.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM 4541] gi|282568250|gb|EFB73785.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM 4541] Length = 205 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPDIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--QAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + +S ++ ++ S A +AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNPISDIDLPSVKSKGPSQADIEAEAAAALIALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K + +D +IR ALRA Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203 >gi|224025806|ref|ZP_03644172.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM 18228] gi|224019042|gb|EEF77040.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM 18228] Length = 198 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 17/208 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG + + +I+ G+ Y I + T S + GK L++ +R+D Sbjct: 1 MIEYIKGEVIEVVPAQAVIECNGIGYAISISLNTFSAIQGK--KEVKLYIYEAIREDAHI 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F+LL +V G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 59 LYGFYTRQERELFLLLITVSGIGGNTARMILSALSPSELCNVISSGNDKLLKTVKGIGLK 118 Query: 120 IASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ +LK K I ++ V ++ N E A++AL LG+ Q Sbjct: 119 TAQRIIVDLKDKIASTGIDTAAPVTSVIASANTEVYE---------EAVAALTMLGFAQA 169 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 + V +LK+E ++ + ++I+LAL+ Sbjct: 170 PSQKVVGLLLKEEPDLPVE-KVIKLALK 196 >gi|116629085|ref|YP_814257.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus gasseri ATCC 33323] gi|238853828|ref|ZP_04644193.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4] gi|311111127|ref|ZP_07712524.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22] gi|122273917|sp|Q045Q3|RUVA_LACGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116094667|gb|ABJ59819.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus gasseri ATCC 33323] gi|238833523|gb|EEQ25795.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4] gi|311066281|gb|EFQ46621.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22] Length = 192 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 14/193 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV++DV G+ Y I CP + T++VE +R I L Sbjct: 1 MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPT---PYSYQENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L V++ + PS +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGK---LGDYVKKSAVATD-------LTPSLQ-DALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIAD 193 + K +N AD Sbjct: 167 TPKLAKLPENTAD 179 >gi|320528322|ref|ZP_08029484.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204] gi|320131236|gb|EFW23804.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204] Length = 198 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 18/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI +KG + D+V+++ + Y + Y L + D ++ H+ ++ + Sbjct: 4 MIAFVKGKVASYGADWVVVNCHDIGYQMAYPHPENL----HLNDEVFIYTYLHITENDMS 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S ++ F+ L SV+G+G + AMG+LS+ +V +I + ++ ++PGI K Sbjct: 60 LFGFESQDEKALFLKLISVKGLGPKTAMGMLSKCGYQSIVSAIESGDVTLLKKMPGIGAK 119 Query: 120 IASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 AS+I+ +LKGK +S+ +S +QD S P+ A+ L NLGY Q + Sbjct: 120 SASQIVLDLKGKLVSVPTSSPKQD----------TVSYPAEIREALDGLKNLGYKQGE-L 168 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 +AV +++ + + + + ++L L+ Sbjct: 169 SAVANMMSENPGLTTE-KYLKLGLQ 192 >gi|309775420|ref|ZP_07670423.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 3_1_53] gi|308916809|gb|EFP62546.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 3_1_53] Length = 193 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 MI IKG I D ++I+ G+ Y +Y P+ ++ L+ H+R+D I Sbjct: 1 MIAFIKGIIHSYSNDSLIIENNGIGYRVYVSNPMAV-----RLNAEVILYTYQHVREDAI 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF + +R F+ L SV+GVG + A+G+L A ++ +I + KV+ +PGI Sbjct: 56 TLFGFPTMEERDLFLQLISVKGVGPKTALGMLGVCPAKNMIAAIENNDVKVLKGLPGIGA 115 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K AS+I+ +LKGK +V++ KE + ++A+ AL LGY Sbjct: 116 KTASQIVLDLKGK------LVEEVTELEIKENEQL-------LDALEALKALGY-----K 157 Query: 179 TAVVSVLKKE 188 A ++ +KKE Sbjct: 158 NAELNSIKKE 167 >gi|220910036|ref|YP_002485347.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425] gi|219866647|gb|ACL46986.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425] Length = 207 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 22/194 (11%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G I G+ + +DV GV Y + R ++ L G+ +F +R+D Sbjct: 1 MIGYLQGRIAGVQRGGNRTLLTLDVNGVGYDLQILPRLVNKLPPEGETLQMFTHLQVRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q+ L+GF +R F L SV GVG ++A+ +L + ELV++I+ N++ +++ PG+ Sbjct: 61 QMILYGFAITAERDLFRQLISVSGVGPQLALALLEGMELAELVQAIVSGNTRTLSRTPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAIS-----ALVNL 170 K A RI ELK K ++Q+ + ++PS I A+ L+ L Sbjct: 121 GSKTAERIALELKTKLAEW------------RQQSGLTTVPSAGPIAAVREEVELTLLAL 168 Query: 171 GYGQDQATTAVVSV 184 GY + A+ +V Sbjct: 169 GYSSTEVMQALQAV 182 >gi|156933560|ref|YP_001437476.1| Holliday junction DNA helicase RuvA [Cronobacter sakazakii ATCC BAA-894] gi|166230549|sp|A7MEA2|RUVA_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|156531814|gb|ABU76640.1| hypothetical protein ESA_01380 [Cronobacter sakazakii ATCC BAA-894] Length = 203 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLEAGGVGYEVHMPMTCFYELPETGKEAVVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + ++ A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + + A +IR ALRA Sbjct: 181 VSKVAQAD---ASSETLIREALRA 201 >gi|139438977|ref|ZP_01772437.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC 25986] gi|133775688|gb|EBA39508.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC 25986] Length = 206 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 91/193 (47%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++DV GV + + T + L G L+ +R+D + L Sbjct: 1 MISQLHGTLVEATMSSAVVDVSGVGFELGISGSTAATLPTPGGEVRLYTRMQVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV GVG R+A+ VLS T +L ++ ++ K +A++PG+ K Sbjct: 61 FGFASKDERTMFDRLVSVSGVGPRLALAVLSTYTVGQLYSLVMAEDDKGMAKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK V D + PS +A +AL+++G+ + A Sbjct: 121 AQRLILELKSTFAKDKGFVPVDAIPGQVAMPVPAAAPSAIDDARAALLSMGFSPQETDVA 180 Query: 181 VVSVLKKEKNIAD 193 + ++ + D Sbjct: 181 LSGYDGQDMRVED 193 >gi|329903093|ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] gi|327548502|gb|EGF33171.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] Length = 192 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + + T L +G+ L + +R+D L Sbjct: 1 MIGRLSGTLLEKNPPQLLVDCHGVGYEVGVSMSTFYNLPALGEKIVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + GVG R+A+ +LS ++ EL ++I LQ + + ++PG+ K Sbjct: 61 FGFGTAEERNVFRQLIKIAGVGPRMALAILSGMSVAELAQAITLQETGRLTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ V ++P + + ++AL+ LGY +A A Sbjct: 121 AERLLL-------ELKGKLGADLGIVGG-----VALPDGSGDILNALLALGYSDKEAMLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V ++D I+LAL+A+S Sbjct: 169 MKQV-PAGSGVSDG---IKLALKALS 190 >gi|168238525|ref|ZP_02663583.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736016|ref|YP_002114930.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930984|ref|ZP_03221810.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|229560126|sp|B4TYR8|RUVA_SALSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194711518|gb|ACF90739.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288628|gb|EDY28003.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320028|gb|EDZ05233.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616895|gb|EFY13803.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618133|gb|EFY15025.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625804|gb|EFY22623.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626256|gb|EFY23066.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632670|gb|EFY29415.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639014|gb|EFY35707.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640454|gb|EFY37107.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644219|gb|EFY40764.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649542|gb|EFY45974.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655449|gb|EFY51757.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660228|gb|EFY56466.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662909|gb|EFY59116.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668094|gb|EFY64253.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674146|gb|EFY70240.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675500|gb|EFY71574.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683086|gb|EFY79102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686780|gb|EFY82758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195329|gb|EFZ80509.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199221|gb|EFZ84316.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204054|gb|EFZ89069.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207477|gb|EFZ92425.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210663|gb|EFZ95541.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217461|gb|EGA02180.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221952|gb|EGA06342.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224438|gb|EGA08726.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231483|gb|EGA15596.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235925|gb|EGA20004.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240495|gb|EGA24538.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245387|gb|EGA29387.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247807|gb|EGA31745.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253606|gb|EGA37434.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255035|gb|EGA38823.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260268|gb|EGA43889.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266859|gb|EGA50345.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269065|gb|EGA52521.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 203 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L + + V A S + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPGSEDA-EQEAVAALVALGYKPQEASR 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 180 MVSKIARPD---ASSETLIRDALRA 201 >gi|237802930|ref|YP_002888124.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis B/Jali20/OT] gi|237804852|ref|YP_002889006.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis B/TZ1A828/OT] gi|231273152|emb|CAX10065.1| holliday junction DNA helicase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274164|emb|CAX10958.1| holliday junction DNA helicase [Chlamydia trachomatis B/Jali20/OT] Length = 200 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R ++ + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176 A ++M +LK K +L + ++ V A+ SF I AL+NLG+ + D+ Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 T V L +E ++A+ ++ +ALR Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198 >gi|238063870|ref|ZP_04608579.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp. ATCC 39149] gi|237885681|gb|EEP74509.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp. ATCC 39149] Length = 200 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +++V GV ++C TL+ L +IG L +R+D + L Sbjct: 1 MIASVRGTVTATGPDHAVVEVGGVGLAVHCAPGTLAEL-RIGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +Q F LLQ+ GVG R+A VL+ T + ++I ++ + ++PGI K Sbjct: 60 YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELK 129 A R++ EL+ Sbjct: 120 AERLVLELR 128 >gi|237739486|ref|ZP_04569967.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31] gi|229423094|gb|EEO38141.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31] Length = 194 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + +G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKID-LGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ + +L + G+G +A+ VLS + ++VE I + + ++P + K Sbjct: 60 IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLS 136 A I+ +LK K +L+ Sbjct: 120 AQIIILDLKAKLKNLT 135 >gi|134098596|ref|YP_001104257.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea NRRL 2338] gi|291008207|ref|ZP_06566180.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea NRRL 2338] gi|166200258|sp|A4FBA7|RUVA_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|133911219|emb|CAM01332.1| Holliday junction DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 200 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+V GV ++ TL+ L + G+ L+ +R+D + L Sbjct: 1 MIASVRGPVLSVGLDHAVIEVGGVGMAVHATPATLAGL-RRGEEARLWTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+ GVG R+A+ L+ + +L ++ N + Q+PG+ K Sbjct: 60 YGFADAEARDLFGLLQTASGVGPRLALATLAVLAPDQLCHALSDGNITTLTQVPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ ++ + ALV LG+ QA + Sbjct: 120 AERLILELRDKVGTVAGTAGAGAQAPDRGRVR--------SEVSEALVGLGFSAKQAEQS 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL + ++D S ++R AL A+ Sbjct: 172 VEAVLAADGPVSDTSAVLRKALAAL 196 >gi|332978537|gb|EGK15246.1| crossover junction ATP-dependent DNA helicase RuvA [Psychrobacter sp. 1501(2011)] Length = 210 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 110/214 (51%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + L ++ GV Y + P+ C ++ +++ H+R+D Sbjct: 1 MIGSIEGRVCHLAAPVACIMTASGVGYEVELPLPDF-CQLQLDATVSVWTHLHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R F L + GVGA++A+ ++S ++A EL +++ N + ++PGI K Sbjct: 60 LYGFIKHQERDVFRQLIRINGVGAKMALAMMSTMSAPELKQAVETDNDVALTRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQ--AHICSMPSFAI---NAISALVNLGYGQ 174 A R++ ELKGK ++ + + +EQ A I S + SAL++LGY Sbjct: 120 TAQRLLIELKGKFDNIET-----SGGLFEEQGGATISLAGSEGVILAEVESALISLGYRD 174 Query: 175 DQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 +A A+ + + E + I D +++L L+ +S Sbjct: 175 KEAQRAIKAARETEAGQTIVDTQSLLKLTLQQLS 208 >gi|296117790|ref|ZP_06836373.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes DSM 20306] gi|295969021|gb|EFG82263.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes DSM 20306] Length = 211 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 109/212 (51%), Gaps = 10/212 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+ GV Y +TL+ L + GD + +++D L Sbjct: 1 MIASLSGEVLSIALDHAVIECGGVGYQFLATPKTLATLIR-GDHARVMTSMTVKEDARTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D DR F LQ+V G+G ++A+ LS + A E+ +I ++K + IPG+ ++ Sbjct: 60 YGFTNDEDRAMFHQLQAVSGLGPKLAIACLSVLDAREIAVAISNGDAKKLQTIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAI--NAISALVNLGYGQDQ 176 + R+ ELK K +++ + + ++ A +P S AI + ALV LG+ + Sbjct: 120 SERMALELKDK---VNNFIGTPDASDSETTATQTGLPVGSGAIVDTVVEALVGLGFTEKA 176 Query: 177 ATTAVVSVLKKEKNIA--DDSQIIRLALRAIS 206 A V S + + K + + ++R +L A+S Sbjct: 177 ARPVVESHVAESKTPEKLETATVLRASLSALS 208 >gi|325672616|ref|ZP_08152312.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus equi ATCC 33707] gi|325556493|gb|EGD26159.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus equi ATCC 33707] Length = 201 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + GD L +R+D + L Sbjct: 1 MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM +L+ + L +++ N + ++PGI + Sbjct: 60 YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ V D+ S + AL LG+ + A A Sbjct: 120 AERMVVELRDKVEAVA--VTGDLPGAGA----ATSASIVRDQVVEALTGLGFKLEHAEKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 +V+ + A S ++R AL Sbjct: 174 TDTVVAADPE-APTSTVLRSAL 194 >gi|37199217|dbj|BAC95049.1| holliday junction resolvasome, DNA-binding subunit [Vibrio vulnificus YJ016] Length = 206 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 3 VIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V S+ ++ + ++PG+ K Sbjct: 63 YGFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + S+ D+ + A + S S A+SAL+ LGY Q Sbjct: 123 AERLVVEMKDRLKGWSA---GDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQ 179 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + Q+IR AL+++ Sbjct: 180 ASKVVSQIAKPDMT---SEQLIREALKSM 205 >gi|262066188|ref|ZP_06025800.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum ATCC 33693] gi|294783453|ref|ZP_06748777.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA] gi|291380095|gb|EFE87613.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum ATCC 33693] gi|294480331|gb|EFG28108.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA] Length = 194 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + +G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKID-LGNKYKFYIYNHIKEDAYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ + +L + G+G +A+ VLS + ++VE I + + ++P + K Sbjct: 60 IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLS 136 A I+ +LK K +L+ Sbjct: 120 AQIIILDLKAKLKNLT 135 >gi|300727799|ref|ZP_07061181.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14] gi|299774952|gb|EFI71562.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14] Length = 205 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 13/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG + L +++ GV Y + + T S + D L+V + R D Sbjct: 1 MIEYIKGELTELTPALAVVEAAGVGYALNISLNTYSAIQGKKD-VKLYVHEALVAGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R+ + LL +V GVGA A +LS ++ EL I N K++ + GI Sbjct: 60 SFTLYGFFTKQERELYRLLITVSGVGANTARMILSSLSPVELCTVISSGNDKMLKSVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQ 174 +K A RI+ +LK K ISL + + H ++ + + A++AL LG+ Sbjct: 120 GLKTAQRIIVDLKDKIISLGIATE-----LPSNAGHATAIINNDVKDEAVAALTMLGFSP 174 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V ++L ++ + Q+++LAL+ I Sbjct: 175 APSAKVVTAILTDSPDMPVE-QVVKLALKQI 204 >gi|282878437|ref|ZP_06287223.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC 35310] gi|281299423|gb|EFA91806.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC 35310] Length = 204 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 24/216 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI I+G + L +++ GV Y + + T S + GK L+V T R Sbjct: 1 MIEYIRGELTELTPALAVLEAAGVGYGLNISLNTYSAIQGK--KEVKLYVHESLVTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D +GF S +R+ + LL +V GVGA A +LS ++ EL I + +++ + G Sbjct: 59 DNFTFYGFFSKQERELYRLLITVSGVGANTARMILSTLSPAELCNVIANGDERMLKAVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVN 169 I +K A RI+ +L+ K +S S + E H+ S P+ A++ A+SAL Sbjct: 119 IGLKTAQRIIVDLRDKIVS---------SGIATE-LHVSSEPATAVDASIRDEAVSALTM 168 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LG+ + V +LK + ++ + Q+++LAL+ I Sbjct: 169 LGFSPAPSAKVVEGILKSDPSLPVE-QVVKLALKQI 203 >gi|313892063|ref|ZP_07825661.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII 345-E] gi|329120927|ref|ZP_08249559.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister micraerophilus DSM 19965] gi|313119515|gb|EFR42709.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII 345-E] gi|327471386|gb|EGF16837.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister micraerophilus DSM 19965] Length = 200 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 12/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG + + ++ G+ Y I+ L ++G+ L+ +R+D I+L Sbjct: 1 MIGYIKGTVTTFEKQACFVETSGIGYRIFISDIDKEKL-RVGENIKLYTYMAVREDAIQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ F++L SV +G +VAMG+LS I +I ++ V+ ++PGI K Sbjct: 60 YGFIEKESYDLFLILISVSKIGPKVAMGILSSIDINSFCNAIQKKSISVLTKLPGIGKKT 119 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K A+S V+ D E + ++P A+ L +LGY Q+ Sbjct: 120 AERLVLELKDKIAVSNVENVESDT-----ESSTSGTVPEN--EAVMILKSLGY-QEYEIM 171 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 V+ +KKE D +++R L Sbjct: 172 PVLKSIKKE--FKDPMELVRAVL 192 >gi|281422792|ref|ZP_06253791.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205] gi|281403160|gb|EFB33840.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205] Length = 204 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI I G++ L +++ GV Y + + T + + GK L+V T R Sbjct: 1 MIEYIHGDLTELTPALAVVETAGVGYGLNISLNTYTAIQGK--QEVKLYVHEVLVTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D LFGF + +R+ + LL +V GVG A +LS ++ EL E I N K++ + G Sbjct: 59 DSFTLFGFATKQERELYRLLITVSGVGGNTARMILSSLSPRELCEIISTGNDKMLKTVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I +K A RI+ +LK K +SL + S N + A+SAL LG+ Sbjct: 119 IGLKTAQRIIIDLKDKIVSLGIADELPASGGNV----VMVNNDVKDEAVSALTMLGFSPA 174 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +LK + ++ + Q+++LAL+ I Sbjct: 175 PSAKVVVDILKAQPDLPVE-QVVKLALKQI 203 >gi|154149661|ref|YP_001403279.1| Holliday junction DNA helicase RuvA [Candidatus Methanoregula boonei 6A8] gi|153998213|gb|ABS54636.1| Holliday junction DNA helicase RuvA [Methanoregula boonei 6A8] Length = 201 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +V++DV G+ Y ++ P + + G L +R+D I L Sbjct: 1 MIAYLEGTPAATGDRWVVLDVNGIGYRVHVPEPEVREIAGAGTKVKLHTYMAVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + + F ++ V G+G ++A+ +LS+I+ + V +I+ + K + +I GI K Sbjct: 61 YGFLHESELELFTVIIGVSGIGPQIALNILSQISLEDFVLAILSGDEKSLTRISGIGPKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A R++ EL+ K M V H + A +A SALV+LG+ + + Sbjct: 121 AKRLILELRDK-----------MKKVQDAMTHTPAGRQDATLRDAASALVSLGFAEAASY 169 Query: 179 TAVVSVLKKEKNIADDS--QIIRLALR 203 AV S + +A + +I++ ALR Sbjct: 170 DAVASA---ARGLAAPTVQEIVKAALR 193 >gi|78187612|ref|YP_375655.1| Holliday junction DNA helicase RuvA [Chlorobium luteolum DSM 273] gi|123743607|sp|Q3B219|RUVA_PELLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78167514|gb|ABB24612.1| Holliday junction DNA helicase subunit RuvA [Chlorobium luteolum DSM 273] Length = 200 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 7/186 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + + +++V G+ Y T L + G+ L+ +R+D ++L Sbjct: 1 MYAYFRGRVVSVLPEEAVLEVSGIAYRFLISTGTSRSLPQAGNEAILYTHLSVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++Q F LL V GVG ++A+ VLS + E+ E+I+ + + + G+ K Sbjct: 61 YGFSSEEEKQLFRLLLLVSGVGPKLALAVLSGLPVAEVHEAILANAPERLFGVTGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + LS + C + A N AL+ LG+ + A A Sbjct: 121 AARIILELRDRILKLSPPGAAATPAGAVQ----CGIREDATN---ALLTLGFSRTAAQQA 173 Query: 181 VVSVLK 186 V VL+ Sbjct: 174 VAGVLE 179 >gi|312143984|ref|YP_003995430.1| Holliday junction DNA helicase RuvA [Halanaerobium sp. 'sapolanicus'] gi|311904635|gb|ADQ15076.1| Holliday junction DNA helicase RuvA [Halanaerobium sp. 'sapolanicus'] Length = 200 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L +IDV GV Y + L +GD L++ T++R+D ++L Sbjct: 1 MIGFLEGELIYLEAGQAIIDVNGVGY--ETELAGFDDLPTVGDDIELYIYTYVREDALKL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F S D++ F +L +V G+G + + +++ + A + +I+ +N V+ +I GI K Sbjct: 59 FAFPSRKDKELFEILITVNGIGPKAGLNIINTMPADRFISAIMQENELVLKKISGIGPKT 118 Query: 121 ASRIMTELKGK 131 A R++ EL+GK Sbjct: 119 AQRLILELQGK 129 >gi|226329884|ref|ZP_03805402.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198] gi|225200679|gb|EEG83033.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198] Length = 206 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG+I+G I VLI+ GV Y I P+ L IG ++ + +R+D Sbjct: 1 MIGRIRGIILEKQPPVVLIEAGSGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F L V GVG ++A+ +LS ++A + V +I ++ + ++PG+ K Sbjct: 61 LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA---INAISALVNLGYGQDQ 176 A R++ E+K + L+ + ++ S + ++ P A A +AL+ LGY + Sbjct: 121 TAERLVVEMKDRFKGLNGDLFEN-SDIELPESTPSKAPKAADIEAEASAALIALGYKPQE 179 Query: 177 ATTAVVSVLKKEKNIADDSQ-IIRLALRA 204 A + V K + DS+ +IR ALRA Sbjct: 180 AAKMISKVAK----LGTDSETLIREALRA 204 >gi|154493758|ref|ZP_02033078.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC 43184] gi|154086508|gb|EDN85553.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC 43184] Length = 197 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI IKG I L ++++ G+ Y + + T + GK ++V +R+D Sbjct: 1 MIEYIKGEIVELTPARMILECAGIGYELNISLNTYTFYNGK--PTGKIYVYEVIREDAHL 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF +R+ F++L SV GVG A +LS ++ +EL+ I +N + + GI +K Sbjct: 59 LFGFAGKDERELFLMLTSVSGVGPNTARMILSSLSPSELIRVIADKNETALTSVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LK K + + V + + + + A++ALV LG+ + + Sbjct: 119 TAQRILVDLKNKVKPIEGM------TVTGGSSSVAASGAVTEEAVAALVMLGFQKAASQK 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV +LK +A + Q+I+ ALR Sbjct: 173 AVNLILKGSPALAVE-QVIKTALR 195 >gi|254496522|ref|ZP_05109393.1| holliday junction DNA helicase [Legionella drancourtii LLAP12] gi|254354261|gb|EET12925.1| holliday junction DNA helicase [Legionella drancourtii LLAP12] Length = 199 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G+I ++ L+ +V GV Y + + T L + L + T +R+D + Sbjct: 1 MIGWLDGHIVDKHQPGKLVLNVNGVGYDVETSLNTFFQLDTLSGSIGLHIHTVVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVG ++A+ +LS IT E ++ I + + + ++PGI K Sbjct: 61 LYGFLDKQERALFRALIKVNGVGPKMAIAILSSITPNEFIQCIKQEKAAFLTKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ +I S D+S ++ A+SAL LGY +A Sbjct: 121 TAERLVIEMR-DSIKQFSEPASDLSL------KPINLIRGQDEAVSALEALGYKPQEALK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + K+ Q+IR AL+ +S Sbjct: 174 AVNKLDDGHKSC---EQLIREALQILS 197 >gi|38233961|ref|NP_939728.1| Holliday junction DNA helicase motor protein [Corynebacterium diphtheriae NCTC 13129] gi|81564836|sp|Q6NGX4|RUVA_CORDI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|38200223|emb|CAE49907.1| holliday junction DNA-helicase [Corynebacterium diphtheriae] Length = 203 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 6/202 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G +E + +I+ GV Y + TL L + G+ + +R++ L Sbjct: 1 MIVSLRGTVESIGLGSAVIECNGVGYEVLAAPTTLGRLTR-GEQARVLTTMVVREESQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D R+ F+LLQSV G+G ++A+ S T ++ I ++K + +IPG+ ++ Sbjct: 60 YGFTDDASRRMFVLLQSVSGLGPKLALAAQSVFTTEDIARHIAGGDAKALQKIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + Q I + + ALV LG+ + A Sbjct: 120 AERMIVDLKDKVVGFND----GIPAAAQPQLSIAVDQAVQEQVLEALVGLGFSEKIALPV 175 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + VL+ ++ SQ +R AL Sbjct: 176 LSRVLRDSPELS-KSQALRAAL 196 >gi|269126344|ref|YP_003299714.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM 43183] gi|268311302|gb|ACY97676.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM 43183] Length = 202 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D+ ++DV GV + C TL+ L ++G+ T+ +R+D + L Sbjct: 1 MIAFVSGKVAAAGPDHAVVDVGGVGLTLQCTPATLAGL-RVGEQVTVPTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R F LLQ+ GVG R+A+ +L+ + L ++ + + ++PGI K Sbjct: 60 FGFADDDERAVFELLQTASGVGPRLALAMLAVHSPNALRRAVAAGDVAALTKVPGIGKKG 119 Query: 121 ASRIMTELK 129 A RI+ ELK Sbjct: 120 AQRIVLELK 128 >gi|297626360|ref|YP_003688123.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922125|emb|CBL56693.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 203 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 106/208 (50%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + ++++IDV GV + + T S L + G T+F +R+D ++L Sbjct: 1 MIAQLHGKVAAIGANWLVIDVAGVGFQVSTTPNTTSAL-RTGQTATVFTSLVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L ++ GVG ++A+ ++S +T E ++ ++ + +PGI K Sbjct: 60 YGFGGTDERDCFELCRTASGVGPKLALAIVSVLTPEEFATAVRTEDLPRLCTVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK + +L ++ N + P++ ++ L +LG+ A A Sbjct: 120 AQKIVIELKDRVDALF------VAPTNGSASVAPVTPAWQEQVMAGLESLGWSSRDAEAA 173 Query: 181 --VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ L +E A + +++ AL +++ Sbjct: 174 CETVAPLAEEDPEATVAALMKAALASLA 201 >gi|108804162|ref|YP_644099.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter xylanophilus DSM 9941] gi|123069128|sp|Q1AWE1|RUVA_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|108765405|gb|ABG04287.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter xylanophilus DSM 9941] Length = 196 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + V++D GV Y P+ TL L +G+ C + +R+D + L Sbjct: 1 MIDRLRGQLVEKDPEGVVVDCGGVGYRAAAPLSTLRALPAVGEECVVHTRMVVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L SV VG R+A+ VLS +T +++E+ + A +PG+ K Sbjct: 61 FGFATREEREAFDALTSVSKVGPRLALAVLSAMTPGQMMEAAARGDVHRFAAVPGLGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+G+ ++ + + F + A AL LGY ++A A Sbjct: 121 AERLVLELRGRELAAAGGGGGVAAGEGDG--------PF-MEAREALTGLGYSLEEAERA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V +E Q I+ ALR I Sbjct: 172 LRDVPPQETV----EQYIKAALRKI 192 >gi|282864188|ref|ZP_06273244.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE] gi|282560675|gb|EFB66221.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE] Length = 208 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 19/215 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L + +I+V G+ + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALTPNTAVIEVGGIGMALQCTPGTLSGL-RVGQEARLAASLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRIAVATGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ ELK G+ + + + QQ + + S S+ +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGEPVG-AHIGQQGIGTA------VSS--SWRDQLQAALIGLGYATREA 170 Query: 178 TTAVVSVLKK-EKNIADDS-----QIIRLALRAIS 206 AV +V + E +AD + Q++R AL++++ Sbjct: 171 DEAVSAVTPQAEAAVADGAQPPVPQLLRAALQSLN 205 >gi|152980261|ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] gi|166230559|sp|A6SUQ3|RUVA_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151280338|gb|ABR88748.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] Length = 191 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + P+ T L +GD L +R+D L Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L + G+GAR A+ +LS ++ +L ++I +Q + + +IPGI K Sbjct: 61 FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ S + ++AL+ LGY +A A Sbjct: 121 AERLLL-------ELKGKLGADLGVAGAVATDATS------DILNALLALGYSDKEAMLA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK+ S I+LAL+++S Sbjct: 168 ----LKQVPAGTGVSDGIKLALKSLS 189 >gi|34556867|ref|NP_906682.1| Holliday junction DNA helicase RuvA [Wolinella succinogenes DSM 1740] gi|44888365|sp|Q7MA70|RUVA_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34482582|emb|CAE09582.1| PUTATIVE HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes] Length = 189 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KGNIE + ++V GV Y I+ I T + LG+ L + +R++ L Sbjct: 1 MIVALKGNIEKKEPTRLWLEVGGVTYEIFISIHTSAALGE--KEARLLITHLIREEAWSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F L + GVG + A+ +LS T + I Q+ K + ++PGI K Sbjct: 59 YGFAEEAEKRVFDTLIKINGVGPKAALAILSTYTPPTFAQIIQAQDVKALQRVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE 149 A RIM EL G ++SL + V +E Sbjct: 119 AGRIMVELAGFSLSLQEGSKASTPPVFEE 147 >gi|217967994|ref|YP_002353500.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM 6724] gi|217337093|gb|ACK42886.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM 6724] Length = 192 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 21/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 + I G + ++ D ++ID + IY S L + + + L++ + +D I+ Sbjct: 3 FLNHIYGKLLKIHGDSLIIDTGNFGFKIYVSKNLTSKLSEELNNKILLYIAEVIEKDGIK 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGFLS+ +R F L+++ GVG ++A+ ++S ++ E E I ++ + +PG+ K Sbjct: 63 FFGFLSEEERDLFERLKNITGVGIKIALRIVSAMSPKEFYEVIEKEDLNALLMVPGVGKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 I +I E+KG I ++D+ L+NLGY +++ Sbjct: 123 ITQKIFLEIKG-VIPKREHKEEDIIK-------------------DTLLNLGYKKEEIEV 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + K+ K++ + +IIR ALR +S Sbjct: 163 VMKEIRKEFKDLDNLEEIIRFALRKLS 189 >gi|296139644|ref|YP_003646887.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM 20162] gi|296027778|gb|ADG78548.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM 20162] Length = 199 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++ GV Y + T L + G +L +R+D + L Sbjct: 1 MIASLRGEVRHIGLDHVVVECAGVGYKVLVAPATAGALTR-GSEGSLLTSMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F LLQ+VQGVG R+AM ++ + ++ +I + K + IPGI ++ Sbjct: 60 YGFTDSPQQELFHLLQTVQGVGPRLAMAAIAVLEPAQMQSAIASGDIKTLCLIPGIGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQ 176 A RI ELK K + S+ V QA + PS A + AL LG+ Q Sbjct: 120 AERIHIELKDKVAAPSTSVG---------QAGTSNAPSGGTAQQLLDALEGLGFTPKQ 168 >gi|168333338|ref|ZP_02691622.1| Holliday junction DNA helicase RuvA [Epulopiscium sp. 'N.t. morphotype B'] Length = 183 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 24/195 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQI 58 MIG + G + +E+ +L++V G+ Y I+ GKI D +++ ++++D Sbjct: 1 MIGYLVGTVAERFENIILLEVNGIGYEIFM-------XGKI-DVAEVKIYIYENIKEDAY 52 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF+S +++ F L SV G+G + A ++ + LVE I+ +++ I ++PGI Sbjct: 53 DLYGFVSLAEKELFKKLISVNGIGPKAAAALIV-LHGINLVECIVNEDASEITRVPGIGA 111 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 KIASR++ ELK K +S +++ + E+ A +ALV LGY + QA Sbjct: 112 KIASRLILELKDK-LSAFKTLEKRVVVDGLEE------------ATAALVALGYNKKQAA 158 Query: 179 TAVVSVLKKEKNIAD 193 AV +V +I D Sbjct: 159 RAVNAVYNYSDSIED 173 >gi|84496343|ref|ZP_00995197.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649] gi|84383111|gb|EAP98992.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649] Length = 201 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D V+I+V GV +++ RT + ++G T+ +R+D + L Sbjct: 1 MIASLSGRVAHVGLDRVVIEVGGVGMLVHTTPRTAGEV-RMGQDVTVSTTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F +Q+V GVG R+A+ +LS +T + ++ + + +IPG+ K Sbjct: 60 FGFGSPSERDMFETVQTVSGVGPRLALAMLSVLTPDAVSAALRAGDLATLTKIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K S D V A + + ALV LG+ QAT A Sbjct: 120 AERLVLELKDKVGMPSGSPGAD---VTPSAASLGDAKRDQVA--EALVGLGWSAKQATDA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V SV A + ++R+ALR + Sbjct: 175 VASVSAAADPEASVAALLRMALREL 199 >gi|253688206|ref|YP_003017396.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495651|sp|C6DFF1|RUVA_PECCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|251754784|gb|ACT12860.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 205 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA----ISALVNLGYGQDQ 176 A R++ E+K + LS + +S + A S S A + +ALV LGY + Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDI--PLASPASAESRASDPEAEAAAALVALGYKPQE 178 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A+ + + + E AD +IR ALRA Sbjct: 179 ASRMISKIARPE---ADCETLIRDALRA 203 >gi|255348878|ref|ZP_05380885.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70] gi|255503418|ref|ZP_05381808.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70s] gi|255507096|ref|ZP_05382735.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis D(s)2923] gi|289525546|emb|CBJ15024.1| holliday junction DNA helicase [Chlamydia trachomatis Sweden2] gi|296435106|gb|ADH17284.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/150] gi|296438826|gb|ADH20979.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/11023] Length = 200 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHIDESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRDERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176 A ++M +LK K +L + ++ V A+ SF I AL+NLG+ + D+ Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 T V L +E ++A +++ +ALR Sbjct: 175 MMTEAVKELSEEASVA---ELLPIALR 198 >gi|268318974|ref|YP_003292630.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus johnsonii FI9785] gi|262397349|emb|CAX66363.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus johnsonii FI9785] Length = 192 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 14/193 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y+++DV GV Y I CP + ++VE +R I L Sbjct: 1 MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSYDENQP---AAIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK V K A PS +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKL----------GDYVKKSTAAADLTPSLQ-DALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIAD 193 + K +N AD Sbjct: 167 TPKLAKLPENTAD 179 >gi|317472815|ref|ZP_07932126.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA] gi|316899734|gb|EFV21737.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA] Length = 198 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +++ G+ Y I P G IG ++ H+R+D I L Sbjct: 1 MISYIKGILVSMTPGGAVVENNGIGYDIMMPAGQ-EFPGGIGQEVRIYTHMHVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F LL V G+G +V + VLS ++ EL +++ +SK I++ PG+ K Sbjct: 60 FGFRTKEELEAFELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ EL+ K + Q + M + + S A+ A LV+LGY + +A Sbjct: 120 AKKLILELRDK-LDFEEFEQAEPMDFA----GDLPAEDSVAVTA-QGLVSLGYSRSEAMM 173 Query: 180 AVVSVLKKEKNIADDS--QIIRLAL 202 A+ KK +N A+ S Q+++ AL Sbjct: 174 AI----KKVENAAEYSPEQLLKKAL 194 >gi|291513714|emb|CBK62924.1| Holliday junction DNA helicase subunit RuvA [Alistipes shahii WAL 8301] Length = 193 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 12/201 (5%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG + + Y +IDV GV Y ++ + T S + + L+V +R+D L+GF Sbjct: 5 IKGTVAEVAPAYAVIDVGGVGYYLHISLETYSAIEHETE-TRLYVHYVVREDAQLLYGFS 63 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + +R+ F LL SV GVG A +LS + EL I N+ ++ + G+ +K A +I Sbjct: 64 TKAERELFRLLISVSGVGGNTARMILSTYSPRELQGIITAGNAVLLKNVKGLGLKTAQKI 123 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + EL GK ++ + A + SF A++AL LG+ + A + V Sbjct: 124 IVELSGKLMA---------PGADDGGAQPGAGGSFD-EALAALSMLGFARAPAEKVLRGV 173 Query: 185 LKKEKNIADDSQIIRLALRAI 205 L +E A ++IR+AL+ + Sbjct: 174 L-RESPAAPVEELIRMALKKL 193 >gi|182418560|ref|ZP_02949841.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521] gi|237668331|ref|ZP_04528315.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377563|gb|EDT75114.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521] gi|237656679|gb|EEP54235.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 200 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 107/202 (52%), Gaps = 9/202 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG G+ +DY++++ G+ Y I+ T+S + + G+ L+V+ +R+D I L+GF Sbjct: 5 IKGKYMGMNKDYIVVENSGIGYKIFTSGATMSSVPECGEEVILYVDQIVREDFIGLYGFD 64 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S + F LL +V GVG + A+ +LS L +I+ + K I + GI K A+RI Sbjct: 65 SKEELAMFKLLLTVNGVGPKAALSLLSISRLNNLKYAIMTGDEKHICRGVGIGKKTAARI 124 Query: 125 MTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183 + ELK K + V D + N + ++ ++ +SAL+ LGY + ++ + + Sbjct: 125 ILELKDKLQPDELLDVAVDSNKDNNGENNLMAVSE----VLSALIALGYSEKESEKVLKT 180 Query: 184 VLKKEKNIADDSQIIRLALRAI 205 + K E +I+ AL+A+ Sbjct: 181 IDKTETV----ENMIKNALKAL 198 >gi|315037644|ref|YP_004031212.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL 1112] gi|325956129|ref|YP_004286739.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus 30SC] gi|312275777|gb|ADQ58417.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL 1112] gi|325332694|gb|ADZ06602.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus 30SC] gi|327182937|gb|AEA31384.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL 1118] Length = 195 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 13/179 (7%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 Y+++DV GV Y +Y P G+ +++E +R I L+GF S D+ F+ L Sbjct: 16 YIVVDVNGVGYKVYSPTPFAYTQGQK---AKVYIEQVVRDTGITLYGFQSQDDKGLFLKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV G+G + AM +++ + L E+I K + + PG+ K AS+I+ +LKGK L Sbjct: 73 LSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---L 129 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 V + N E+ S A+N A+ AL+ LGY Q + +++ + + AD Sbjct: 130 GDYVARLDRKDNDEEI------SPALNDALLALIALGYTQKEVDRITPKLIEVDADTAD 182 >gi|260772519|ref|ZP_05881435.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP 69.14] gi|260611658|gb|EEX36861.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP 69.14] Length = 205 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++I+V GV Y + P+ L I + ++ +R+D L Sbjct: 1 MIGRLRGLLIEKQPPQIVIEVNGVGYEVQMPMSCFYELPNINEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLGILSGMTASQFVACVEREDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-----INAISALVNLGYGQD 175 A R++ E+K + S D+ + A + P A AISAL++LGY Sbjct: 121 AERLLVEMKDRLKGWGS---GDLFTPATDAAPLDHSPVTAEQNAQEEAISALLSLGYKPV 177 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA+ VVS + K ++ Q+IR AL+++ Sbjct: 178 QASK-VVSQMAKPGMTSE--QLIREALKSM 204 >gi|305665237|ref|YP_003861524.1| Holliday junction DNA helicase motor protein [Maribacter sp. HTCC2170] gi|88709990|gb|EAR02222.1| Holliday junction DNA helicase motor protein [Maribacter sp. HTCC2170] Length = 193 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +V+I+ GV Y + + T S L + + +L+ +++D L Sbjct: 1 MITHLKGKLVEKNPTHVIIECAGVGYFVNISLHTFSNLKDVENI-SLYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+G+ A +LS ++ ++ ++I + I I GI K Sbjct: 60 FGFAEKSEREIFRLLLSVSGIGSSTARTMLSSLSPAQIRDAIANGDVATIQGIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC--VNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ +L+ K + + + + +S NKE+ A+SAL LG+ + QA Sbjct: 120 AQRVILDLRDKILKVYDIDEVSLSSNNTNKEE------------ALSALEVLGFARRQAE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V VL ++ +++ ++ II+ AL+ + Sbjct: 168 KVVDKVLSQDSSLSVEN-IIKHALKNL 193 >gi|299769122|ref|YP_003731148.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1] gi|298699210|gb|ADI89775.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1] Length = 199 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + ++ Q S Q + A A +AL +LGY +A A Sbjct: 120 AERLMIELRDR---FKTLAQGTSSTTTLPQIQFAANSPVA-EAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|332982456|ref|YP_004463897.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1 BON] gi|332700134|gb|AEE97075.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1 BON] Length = 194 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 100/203 (49%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G IE +YV+IDV G+ + +Y + L+ + + L+V H+ + + L Sbjct: 1 MLAYLDGLIEHKSSNYVIIDVNGIGFKVYATTKILADMPDVKSRTRLYVHWHIGEGNMAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ F L SV GVG + A+ ++ ++ +++ +I+ + K +++ GI K Sbjct: 61 FGFASEQQVDMFESLISVSGVGPKGALALMDALSYEQILLAIVQGDEKSLSRAKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + D+ E + A+ AL++LGY +A Sbjct: 121 AQRIIMELKDKLHMPREIKSSDIGERIDESTY--------GQAVEALISLGYAPAEAARV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V +++ ++I+ ALR Sbjct: 173 LEGVTTDGRSL---EEVIKEALR 192 >gi|15835402|ref|NP_297161.1| Holliday junction DNA helicase motor protein [Chlamydia muridarum Nigg] gi|270285581|ref|ZP_06194975.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg] gi|270289591|ref|ZP_06195893.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Weiss] gi|301336977|ref|ZP_07225179.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum MopnTet14] gi|13431873|sp|Q9PJP0|RUVA_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|7190816|gb|AAF39591.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg] Length = 200 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 M IKG + E YV+I+ G+ Y I R L L ++ ++V + +R+ + Sbjct: 1 MYEYIKGKLTHTDEAYVVIESFGIGYSIMLSERFLVDLRELMHQEVLIYVHSVIRETEHS 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLAILNMFPLQELCSVARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + ++ + + SF I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPALMPLYLEEPVVASS-----STTTSFK-EGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEDASVAELLPVALR 198 >gi|188586412|ref|YP_001917957.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus JW/NM-WN-LF] gi|229560108|sp|B2A5L5|RUVA_NATTJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|179351099|gb|ACB85369.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 214 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 6/213 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + + DY ++ G+ Y IY P + G L +R+D + L Sbjct: 1 MITRIRGEMLEITPDYCVVMAGGLGYKIYIPDNCQEEIPDPGQEIDLHTYLSVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S F L+ +V G+G ++A+ ++ I TE S++ + ++PGI K Sbjct: 61 YGFTSGEQLAVFELIMNVSGIGPKIALALVGTIPPTEFYLSVLNDQVNQLTKVPGIGKKS 120 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNK-----EQAHICSMPSFAINAISALVNLGYGQ 174 A RI+ ELK K ++S QD+S K E+ I + +AL +LGY Sbjct: 121 AQRIILELKEKVKDITSKDAYQDISASEKLDNTGEKLGISTRHKHLDELKAALSSLGYTN 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 + V ++ + D +++RLAL+ ++ Sbjct: 181 REIEKTVDAIQGQITEGQDMEELLRLALQKLNT 213 >gi|227496221|ref|ZP_03926520.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis DSM 15434] gi|226834252|gb|EEH66635.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis DSM 15434] Length = 209 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+V GV TL+ L ++G+ T+ E +R+D + L Sbjct: 1 MIASLRGTVLDISLTGAVIEVGGVGMAFQATPTTLAGL-RVGEEGTVHTELVVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +RQ F +L +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADADERQCFRVLLGAKGVGAKLALAILAVHTPDALRRAIASQDVAALKRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQA 177 A R++ ++ K L + QD++ + QA + + ++ALV LG+ + QA Sbjct: 120 AQRVIIDVGDK---LGPLTGQDLAA-ERPQAPAETGEEANPDVVAALVQLGWNEATARQA 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 AV S +++ +++R +LR Sbjct: 176 VGAVESGAQEQGEALSVPELLRASLR 201 >gi|227894652|ref|ZP_04012457.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047] gi|227863547|gb|EEJ70968.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047] Length = 195 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 11/178 (6%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YV++DV GV Y +Y P K G +++E +R I L+GF S D+ F+ L Sbjct: 16 YVVVDVNGVGYKVYSPT---PFAYKQGQKAKVYIEQVVRDTGITLYGFQSQDDKGLFLKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV G+G + AM +++ + L E+I K + + PG+ K AS+I+ +LKGK Sbjct: 73 LSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGKLGDY 132 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 V + D + +E + + +A+ AL+ LGY Q + + K + + AD Sbjct: 133 --VARLDRTDSGEEISPALN------DALLALIALGYTQKEVDRITPKLEKVDADTAD 182 >gi|262278158|ref|ZP_06055943.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus RUH2202] gi|262258509|gb|EEY77242.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus RUH2202] Length = 199 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + ++ Q S Q + A A +AL +LGY +A A Sbjct: 120 AERLMIELRDR---FKTLAQGTSSTTTLSQIQFAANSPVA-EAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|166363769|ref|YP_001656042.1| Holliday junction DNA helicase RuvA [Microcystis aeruginosa NIES-843] gi|189045757|sp|B0JRV0|RUVA_MICAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166086142|dbj|BAG00850.1| holliday junction DNA helicase [Microcystis aeruginosa NIES-843] Length = 209 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 97/183 (53%), Gaps = 11/183 (6%) Query: 17 VLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +++DV + Y I P R L D C +F +R++Q L+GF + +R+ F L Sbjct: 22 LILDVNQIGYEIQIPSRLALDIGNNNNDSCQIFTHLLLREEQPLLYGFGTAPERELFRQL 81 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV GVGA++A+ ++ + ELV +I+ N+K++++ PG+ +K A RI ELK K + Sbjct: 82 LSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTPGVGLKTAERIALELKTKLAAW 141 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 + + + +P+ AI + L+ LGY Q++ A ++VL ++ + Sbjct: 142 RQLREATTTIT-------AILPAAAILEDVQMTLLALGYSQEEIDRA-MAVLSQDALFSK 193 Query: 194 DSQ 196 ++Q Sbjct: 194 NTQ 196 >gi|163753887|ref|ZP_02161010.1| Holliday junction DNA helicase [Kordia algicida OT-1] gi|161326101|gb|EDP97427.1| Holliday junction DNA helicase [Kordia algicida OT-1] Length = 193 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + V+I+ GV Y I + T S + + LF H+R+D L Sbjct: 1 MITHIQGKLVEKNPTDVVIECNGVGYFINISLTTYSQIPN-QENIKLFTHLHVREDAQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LL SV G+G A +LS +T+ ++ E+I + I + GI K Sbjct: 60 YGFFQKAERAVFRLLISVSGIGTSTARTMLSSLTSEQICEAIGSGDVPTIQGVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK K + L + + MS NKE+ +SAL LGY + Q+ Sbjct: 120 AQRVIIELKDKVLKLYDLDEVSMSQNNTNKEE------------TLSALEVLGYTRKQSE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + ++ KE Q+I++AL+ + Sbjct: 168 RVLDKII-KEMPAGSVEQLIKMALKNL 193 >gi|154686915|ref|YP_001422076.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens FZB42] gi|308174476|ref|YP_003921181.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|166230516|sp|A7Z769|RUVA_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154352766|gb|ABS74845.1| RuvA [Bacillus amyloliquefaciens FZB42] gi|307607340|emb|CBI43711.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|328554396|gb|AEB24888.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens TA208] gi|328912801|gb|AEB64397.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus amyloliquefaciens LL3] Length = 201 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 108/207 (52%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y ++ P + K+ + T+F H+++D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPN---PFIYKVSNQETIFTYHHIKEDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L ++E+I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A +I+ +LKGK L+ VV + + + +A I + A+ AL LGY + + Sbjct: 118 ARQIILDLKGK---LADVVPEMIDNLFNHEARIEKQEAETALDEALEALRVLGYAEKE-I 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V+ LK+E ++ D Q ++ AL+ + Sbjct: 174 KKVLPHLKEETALSTD-QYVKKALQKL 199 >gi|284051632|ref|ZP_06381842.1| Holliday junction DNA helicase RuvA [Arthrospira platensis str. Paraca] gi|291571635|dbj|BAI93907.1| Holliday junction DNA helicase RuvA [Arthrospira platensis NIES-39] Length = 206 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 27/209 (12%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG + G + G+Y+ + +DV GV Y + R + K G+ +F +R Sbjct: 1 MIGYLNGTVAGIYKKTGNRVILYLDVNGVGYELQILPRMQNLDAKTGENLQVFTHLQVRD 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D + L+GF S +R F L SV G+G ++A+ +L + +LV++I+ N+ ++ + PG Sbjct: 61 DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLELPDLVQAIVGGNTGILTKTPG 120 Query: 116 ISMKIASRIMTELKG------KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 + K A RI ELK K L +V ++S +E+ + +L+ Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAEIQEEVEM------------SLLA 168 Query: 170 LGYGQD---QATTAVVSVLK-KEKNIADD 194 LGY QA TA+ S E N A+D Sbjct: 169 LGYTSSEVMQALTAITSHPNLAENNSAED 197 >gi|241766520|ref|ZP_04764384.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN] gi|241363253|gb|EER58812.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN] Length = 190 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSTFYNLPAVGERVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R A+ +LS + +L ++I LQ + + ++PGI K Sbjct: 61 YGFGTATERQAFRELIKISGVGPRTALSILSGMGVGDLAQAITLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + Q + QA I + ALV LGY D+ A Sbjct: 121 AERLLLELKGKLGAEMGTHAQ---VTSDAQADI----------LQALVALGY-NDKEAAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L + ++D I+LAL+A++ Sbjct: 167 ALKALPADVGVSDG---IKLALKALA 189 >gi|271967390|ref|YP_003341586.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium roseum DSM 43021] gi|270510565|gb|ACZ88843.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium roseum DSM 43021] Length = 206 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 24/217 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D +++V GV +++C TL+ L ++G+ L +R++ + L Sbjct: 1 MIASVRGRVAAIAPDGAVVEVGGVGMLVHCTPGTLATL-RVGEEARLATSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R F +LQ+ GVG +VA+ +L+ T L ++ + K + ++PG+ K Sbjct: 60 FGFGSDDERGVFEMLQTANGVGPKVALAMLAVHTPNALRMAVASADVKALTRVPGVGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-----KEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ +LK K + V ++ ++Q H S LV LGY Sbjct: 120 AQRIIVDLKDKLGTPDQAVNAALNGGAAAPAWRDQVH------------SGLVGLGYSAR 167 Query: 176 QATTAVVSVLKK------EKNIADDSQIIRLALRAIS 206 A AV +V + E + +++ ALRA+S Sbjct: 168 DADEAVAAVTPQADIEVAEGRSPQVATLLKAALRALS 204 >gi|289425381|ref|ZP_06427158.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187] gi|289428316|ref|ZP_06430003.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165] gi|295130717|ref|YP_003581380.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137] gi|289154359|gb|EFD03047.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187] gi|289158465|gb|EFD06681.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165] gi|291375923|gb|ADD99777.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137] gi|332675562|gb|AEE72378.1| holliday junction ATP-dependent DNA helicase RuvA [Propionibacterium acnes 266] Length = 201 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G + +V++D GV + CP T + +I +L +R++ + L Sbjct: 1 MISHFSGMVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K Sbjct: 60 YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ ELK K +L+ H+ + + LV LG+ A A Sbjct: 120 AAKMILELKDKVAALTP-----RGASVSGATHVVA--PWREQVAEGLVGLGWSAKDAEKA 172 Query: 181 V--VSVLKKEKNIADDSQIIRLALRAIS 206 V V+ LK+ ++R ALR+++ Sbjct: 173 VDKVAALKEADPAMTIGNLMRAALRSLA 200 >gi|163840742|ref|YP_001625147.1| Holliday junction DNA helicase RuvA [Renibacterium salmoninarum ATCC 33209] gi|189045763|sp|A9WSE5|RUVA_RENSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|162954218|gb|ABY23733.1| holliday junction DNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 214 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 17/198 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +IDV GV ++ +TL L ++G TL +R+D + L Sbjct: 1 MISFLRGPVAHIGLSAAVIDVGGVGMLVQATPKTLGTL-RLGQESTLTTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F +L +V G+G R+ + VL+ + + + + K ++PGI K+ Sbjct: 60 YGFADPDEREVFEILLTVSGIGPRLGLAVLAVLEPETIRVATSTGDGKTFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + +V S + + + ++A+ +LG+ + A + Sbjct: 120 AGRIVLELAGKLVPHGTVNGAPASPSAQWKPQV----------VAAMTSLGWSEKDALAS 169 Query: 181 VVSVLKKEKNIADDSQII 198 V EK AD ++I Sbjct: 170 V------EKATADSPELI 181 >gi|73667297|ref|YP_303313.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str. Jake] gi|90134943|sp|Q3YRE0|RUVA_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72394438|gb|AAZ68715.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str. Jake] Length = 190 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 119/212 (56%), Gaps = 29/212 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQI- 58 MIG + G IE +Y Y++++V V YI++ R L +C KIG+ L++ETH+ +D + Sbjct: 1 MIGSLTGIIEEIYITYIILNVGNVGYIVHVSQRVLQTC--KIGNNIKLYIETHVNRDNLT 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GFL ++ + +L ++ G+ + AM +LS+++ E + S ++ N+K + GI Sbjct: 59 QLYGFLDKQEQDYMRMLITINGINYKTAMSILSKLSP-EQIFSAVVSNNKNAFRGNGIGE 117 Query: 119 KIASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 K+A RI TEL+ K I + ++++D ++++AL++LGY + Sbjct: 118 KLAGRITTELQYKISKMPIEETLIIKED-------------------DSLAALISLGYDK 158 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A A+ + N A+ +IIR AL+ +S Sbjct: 159 LKAFNAIQEIKSDFPN-ANIQEIIRKALQKLS 189 >gi|313159381|gb|EFR58745.1| Holliday junction DNA helicase RuvA [Alistipes sp. HGB5] Length = 194 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 11/201 (5%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 I G + + Y +ID GV Y ++ + T S + + L+V +R+D L+GF Sbjct: 5 ISGPVAEVAPAYAVIDAGGVGYYLHISLETFSAIEHT-ETARLYVHYVVREDAQLLYGFA 63 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + +R+ F L SV GVG A +LS + EL I N+ ++ + G+ +K A +I Sbjct: 64 TKTERELFRHLISVSGVGGNTARMILSTYSPRELQGIITSGNAVLLKNVKGLGLKTAQKI 123 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + EL GK L + N E+ A++ALV LG+ + A A+ + Sbjct: 124 IVELSGKLTGLGDADAALPAAGNGEKLE---------EALAALVMLGFAKTAAEKALRGI 174 Query: 185 LKKEKNIADDSQIIRLALRAI 205 L +E A ++R+ L+++ Sbjct: 175 L-RENPGASVEDLVRMGLKSL 194 >gi|327475178|gb|AEA77184.1| holliday junction DNA helicase [Bacillus aquimaris] Length = 203 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +YV+++ G+ Y +Y +F H+R+D I L Sbjct: 1 MYEYIKGTISQVSPEYVVVENNGIGYQLYT-ANPFVYSKYHNQEIQIFTYQHVREDIIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ FM L +V G+G + A+ +L+ +++ +I +N + + PG+ K Sbjct: 60 YGFLSLEEKLLFMKLLNVSGIGPKGALAILASGAPQQVITAIEEENESFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ +LKGK L VV + N E + AI AL LGY D+ Sbjct: 120 ARQMILDLKGK---LQDVVPDYFPSLFNHNDETEALSDKDEAFDEAILALKALGYS-DRE 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 + LK E + AD +IIR AL+ Sbjct: 176 IKKITPKLKGEGHSAD--EIIRKALQ 199 >gi|325286780|ref|YP_004262570.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga lytica DSM 7489] gi|324322234|gb|ADY29699.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga lytica DSM 7489] Length = 193 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 20/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G + +++I+ GV Y + + TLS K+ D + + TH+ ++D Sbjct: 1 MITHLRGKLVEKNPTFLVIECNGVGYFVNISLHTLS---KVSDAENIQLYTHLQVKEDSH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF +R+ F LL SV G+G +A +LS ++ ++ ++I + I + GI Sbjct: 58 TLFGFAEKSEREIFRLLISVSGIGPSIARTMLSSLSPAQVRDAIAGGDVATIQSVKGIGA 117 Query: 119 KIASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ +LK K + + + V + NKE+ A+SAL LG+ + Q Sbjct: 118 KTAQRVILDLKDKVLKIYDIDEVSTSSNNTNKEE------------ALSALEVLGFARKQ 165 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 A V V+ ++ ++ ++ II+LAL+ Sbjct: 166 AEKTVDVVVSQDPTLSVEN-IIKLALK 191 >gi|325068881|ref|ZP_08127554.1| Holliday junction DNA helicase subunit RuvA [Actinomyces oris K20] Length = 217 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L ++G+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEEALVHTEMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-------PSFAINAISALVNLGYG 173 A R++ ++ K L V D+ M P + ++ALV LG+ Sbjct: 120 AQRVILDVADK---LGPVTGDDLGAAGTTAQTAPGMEVVAAGGPEPHADVVAALVQLGWN 176 Query: 174 QDQATTAVVSVLKKEKNIA---DDSQIIRLALR 203 + A AV SV + D + ++R +LR Sbjct: 177 EASARQAVASVTADAADGGQEPDMAAVLRASLR 209 >gi|116670849|ref|YP_831782.1| Holliday junction DNA helicase RuvA [Arthrobacter sp. FB24] gi|166230514|sp|A0JXB2|RUVA_ARTS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116610958|gb|ABK03682.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter sp. FB24] Length = 214 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +ID+ G + +TLS L + G+ LF +R+D + L Sbjct: 1 MISFLRGTVAHVGLSSAVIDLNGAGMSVNATPQTLSGL-RTGEEGKLFTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R+ F +L SV GVG R+A+ VL+ + + + K ++PGI K+ Sbjct: 60 FGFSSDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDGKAFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + + + + ++A+ +LG+ + AT++ Sbjct: 120 AGRIVLELAGKLVPHGTGAAAAPAAAASAP--------WKPQVVAAMTSLGWSEKDATSS 171 Query: 181 VVSVLKKEKNIADDSQ---IIRLALR 203 + L + Q I+R LR Sbjct: 172 IDKALSDSPELEAGGQVAEILRATLR 197 >gi|304440231|ref|ZP_07400121.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371280|gb|EFM24896.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 193 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 14/192 (7%) Query: 14 EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 E+ V I V G+ +I R + ++ + TLF + +R+D I ++GF+S +R F Sbjct: 14 ENSVTIMVGGIGLLINVSSRENKEI-RLNEEITLFTKMVVREDDISIYGFISKRERSIFS 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 LL V G+G +VAMG++ EL + I+ + K + + PG+ K A RI+ ELK + + Sbjct: 73 LLTMVSGIGPKVAMGIMGMYGEEELRKYILSSDVKSLTKAPGVGKKTAERIILELKDRIV 132 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 + D+ KE S+P +AI ALV LG+ + A+++V + +++ Sbjct: 133 KIFGDFIPDV----KE-----SVPLENDDAIEALVGLGFSAIEVKNALMNV---DPSLSV 180 Query: 194 DSQIIRLALRAI 205 D + I++AL+ I Sbjct: 181 DDK-IKIALKNI 191 >gi|242239574|ref|YP_002987755.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703] gi|242131631|gb|ACS85933.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703] Length = 204 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y ++ P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLIEAAGVGYEVHMPMTCFYELPELGQESVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVFAVEREEIGALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + S ++ A P A +ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLNGDLFTAASDISLPATAGKADEPDPQAEAEAALVALGYKPQEAAR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V + + AD +IR ALRA Sbjct: 181 MVSKVARPD---ADCETLIREALRA 202 >gi|313837773|gb|EFS75487.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes HL037PA2] gi|314927345|gb|EFS91176.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes HL044PA1] gi|314972425|gb|EFT16522.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes HL037PA3] gi|328907430|gb|EGG27196.1| holliday junction DNA helicase RuvA [Propionibacterium sp. P08] Length = 201 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V++D GV + CP T + +I +L +R+D + L Sbjct: 1 MISHLSGKVNAAGLTWVVLDNCGVGIKVLCPPATAAS-ARIDQDMSLQTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K Sbjct: 60 YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAIANEDDATLCRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ ELK K + + + AH+ + S+ LV LG+ A A Sbjct: 120 AAKMILELKDKMAAFAP-----RGSSSSGAAHVAA--SWREQVAEGLVGLGWPTKDAEKA 172 Query: 181 V--VSVLKKEKNIADDSQIIRLALRAIS 206 V V+ L++ ++R ALR+++ Sbjct: 173 VDEVAALREADPTMTIGSLMRAALRSLA 200 >gi|225011142|ref|ZP_03701604.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-3C] gi|225004704|gb|EEG42664.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-3C] Length = 193 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++++ GV Y+++ + T S L + +++ +++D L Sbjct: 1 MITHLRGKLVEKNPTEIVVECGGVGYLVHISLHTYSLLPS-EEAVSIYTHLQVKEDSHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F LL SV G+GA A +LS ++ EL ++I N I + GI +K Sbjct: 60 YGFMEVSERAIFRLLISVSGIGANTARTMLSSLSPEELRDAIAASNVGTIQSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK K + + + + + NKE+ A+SAL LG+ + Q+ Sbjct: 120 AQRVIIELKDKILKIYDLEELSTPLDNTNKEE------------ALSALEVLGFARKQSE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V +LK +++ + II+ L+ + Sbjct: 168 KMVEKILKASPSLSVE-DIIKQTLKGL 193 >gi|294501382|ref|YP_003565082.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551] gi|295706729|ref|YP_003599804.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319] gi|294351319|gb|ADE71648.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551] gi|294804388|gb|ADF41454.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319] Length = 203 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +YV+I+ G+ Y ++ P + + + T++ ++R+D I L Sbjct: 1 MFDYIKGTVTYINPEYVVIENNGIGYQVFTPNPYVFSIDE--QPKTVYTYQYVREDVIAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + FM L SV G+G + + +L+ ++V+++ ++ K + + PG+ K Sbjct: 59 YGFASREQKDLFMKLISVSGIGPKGGLAILASGNPAQVVQAVEEEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAIN-AISALVNLGYGQDQA 177 A +++ +LKGK L +V + + + + + S S A++ AI AL LGY + + Sbjct: 119 ARQMILDLKGK---LHDIVPDAVPSLFADLDAQEVKSQSSEALDEAIEALKVLGYAE-RE 174 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 +V L KE D Q I+ AL+ Sbjct: 175 IKKIVPALMKETMTTD--QYIKEALK 198 >gi|261749358|ref|YP_003257043.1| Holliday junction DNA helicase motor protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497450|gb|ACX83900.1| Holliday junction DNA helicase motor protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 202 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 10/191 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + + ++ID GV Y ++ T S L + G +++ ++++Q Sbjct: 1 MITHLRGKLIEKNQSSLIIDCNGVGYYLHISSYTYSSLLEEEGKEISIYTYLFIKENQHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++R+ F L SV G+G A+ +LS +T E+ ESI ++ +V Q+ GI K Sbjct: 61 LYGFFERIERKIFSHLISVNGIGPSSAITILSSLTPHEIKESISREDIEVFNQVKGIGKK 120 Query: 120 IASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQ 176 A RI+ ELK K +IS S++ ++ + + P I A+SAL+ LG+ + Sbjct: 121 TAQRIIIELKDKISISPSTIPKKG------KNVNFFDKPPIFIKKEALSALIVLGFSPKE 174 Query: 177 ATTAVVSVLKK 187 + + +L K Sbjct: 175 SKKVLEEILDK 185 >gi|189345865|ref|YP_001942394.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245] gi|229560015|sp|B3EFD2|RUVA_CHLL2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189340012|gb|ACD89415.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245] Length = 203 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D ++DV G+ Y T L G+ L+ +++D L Sbjct: 1 MFAYFRGRLTSAMPDEAVVDVSGIGYRFLVSAFTYRQLPPPGEDVLLYAHLSVKEDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +RQ F LL GVG ++A+ VLS + E+ E+I+ + + I G+ K Sbjct: 61 YGFSSESERQLFRLLLLTTGVGPKLALAVLSGLQVHEVHEAIMANAPERLYGISGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + +S + ++ + + +A++AL+ LG+ + A A Sbjct: 121 AARIILELRDRILKMSPDGGKTIASGSGGNLAL----QIKDDALNALITLGFSKPAAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L+ +++ + ++++ AL +I Sbjct: 177 VTGILEGNPSLSVE-EVVKSALVSI 200 >gi|154498068|ref|ZP_02036446.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC 29799] gi|150273058|gb|EDN00215.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC 29799] Length = 201 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 1/127 (0%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 +KG + + ++D GV Y TL+ L K G+ TL+ ++R+D + L+GF Sbjct: 5 VKGPVVHMAPYLAVVDCGGVGYACRTTNNTLARLRK-GETATLYTHLNVREDAMELYGFA 63 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S+ + F LL SV GVG + A+ +LS + L SII + K + PGI KIA RI Sbjct: 64 SENELSCFQLLISVSGVGPKAALSILSSTSPEGLATSIITGDEKALTVAPGIGKKIAQRI 123 Query: 125 MTELKGK 131 + ELK K Sbjct: 124 ILELKDK 130 >gi|297243469|ref|ZP_06927401.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis AMD] gi|296888514|gb|EFH27254.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis AMD] Length = 209 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 12/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LI V GV Y Y P + LS L + G ++ + QD + L Sbjct: 1 MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ +Q V G+G +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG SL + D S + Q++ + S I L++LG+ Q A A Sbjct: 120 AQKIILELKG---SLDPSILAD-SSNDSTQSNKQIVDSSVQCVIEGLISLGWRQVDAQRA 175 Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAI 205 V V E NI AD ++R+AL ++ Sbjct: 176 VEQVC-AENNISTPISDADLPNVLRMALASL 205 >gi|76789238|ref|YP_328324.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis A/HAR-13] gi|90134759|sp|Q3KLJ6|RUVA_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76167768|gb|AAX50776.1| RuvA [Chlamydia trachomatis A/HAR-13] Length = 200 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R ++ + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +++ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAEKECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176 A ++M +LK K +L + ++ V A+ SF I AL+NLG+ + D+ Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 T V L +E ++A+ ++ +ALR Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198 >gi|307130888|ref|YP_003882904.1| component of RuvABC resolvasome, regulatory subunit [Dickeya dadantii 3937] gi|306528417|gb|ADM98347.1| component of RuvABC resolvasome, regulatory subunit [Dickeya dadantii 3937] Length = 205 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y ++ P+ L +G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLIEASGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ Q + ++PG+ K Sbjct: 61 FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + +A + P A +ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPEAAGKAEPEADPQAEAEAALVALGYKPQEAG 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V + AD +IR ALRA Sbjct: 181 RMVSKVARPG---ADCETLIREALRA 203 >gi|292490335|ref|YP_003525774.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4] gi|291578930|gb|ADE13387.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4] Length = 199 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 9/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L++VQGV Y + P+ T L G L+ +R D L Sbjct: 1 MIGRLRGVLLEKRAPFLLLEVQGVGYELEAPMSTFYVLPDRGAEVILYTHLVVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F S+ +R+ F L V GVGA++ + +LS I + ++ + ++PG+ K Sbjct: 61 YAFASEKERELFRNLIRVNGVGAKLGLAILSGIEVESFTRCVQEGDTASLTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + L +++M+ V + S +A+SALV LGY + Q + Sbjct: 121 AERLIVEMRDR---LFDGPREEMAGV---LPRVGSGQVPTSDAVSALVALGY-KSQDASR 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 +V L E +A + +IIR AL Sbjct: 174 MVRQLNTE-GLATE-EIIRQAL 193 >gi|328955749|ref|YP_004373082.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium glomerans PW2] gi|328456073|gb|AEB07267.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium glomerans PW2] Length = 206 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 98/195 (50%), Gaps = 10/195 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + LIDV GV Y + T L + G LF +RQD + L Sbjct: 1 MISQLHGTLVDSSPTSALIDVAGVGYELGISGVTAQALPQPGSDVMLFTRLQVRQDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L +V +GAR+A+ LS T +++ + +++ +A++PG+ K Sbjct: 61 FGFATREERAMFDRLIAVSSIGARLALATLSTFTVSQIRVIVAQEDAARMAEVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS-CVNKEQAHICSMPSFAI---NAISALVNLGYGQDQ 176 A R++ ELK S++ + D+ C + + PS +A +AL+++G+ + Sbjct: 121 AQRLILELK------STLEKGDLPGCADASRESGAMSPSAGSAVDDARAALLSMGFSPQE 174 Query: 177 ATTAVVSVLKKEKNI 191 A+ ++ +E+ + Sbjct: 175 VAVALETLGDEEREM 189 >gi|227484942|ref|ZP_03915258.1| possible crossover junction endoribonuclease subunit A [Anaerococcus lactolyticus ATCC 51172] gi|227237097|gb|EEI87112.1| possible crossover junction endoribonuclease subunit A [Anaerococcus lactolyticus ATCC 51172] Length = 196 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 7/176 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+++ + E+ +I+ + Y I + +LS + +I + ++ +R+D I L Sbjct: 1 MISYIKGDVKAINEEGFIIETNNIGYYINSTLTSLSNI-QINNEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + + F+LL SV +G ++A+G+LS I+A E+ +I+ + + GI K Sbjct: 60 YGFYSKDELEMFLLLISVSSIGPKIAIGMLSSISADEIKLAIVNNDIDKLTDAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ASRI+ EL K ++ + VN + + + A AL NLGY ++ Sbjct: 120 ASRIILELVDKVKKMAIPDLDKVEKVNPVKNNDIEV------AREALKNLGYMEND 169 >gi|332670539|ref|YP_004453547.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484] gi|332339577|gb|AEE46160.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484] Length = 204 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D +++V GV ++ TL+ L ++G TL +R+D + L Sbjct: 1 MIASVRGTVLAVRLDSAVVEVGGVGMLVQATPATLAGL-RVGAQATLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F ++Q+V GVG R+A+ +L+ T L ++ ++ + ++PGI K Sbjct: 60 FGFADADEREVFEVVQTVSGVGPRLALAMLAVHTPDGLRRAVAGEDLAALMRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + + S S + + ALV LG+ A A Sbjct: 120 AQRIVLELGDRLGAPSGAGAPATSSAASDDRR--------DQVVEALVGLGWNAKAAGDA 171 Query: 181 VVSVLKKEKN--IADD-SQIIRLALRAIS 206 V +VL+ AD+ + ++R ALR + Sbjct: 172 VSAVLQDAPGPVAADEVAGVLRAALRTLG 200 >gi|295107077|emb|CBL04620.1| Holliday junction DNA helicase subunit RuvA [Gordonibacter pamelaeae 7-10-1-b] Length = 199 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G IDV GV Y + +LS L + G + +R D I L Sbjct: 1 MIAFLKGRLAGKTAAAAFIDVNGVGYAVGMSQASLSKLPEAGASVEVHTYLQVRDDAIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ ++ F L V GVG +VA+ LS T LV +I Q+ +++IPG+ K Sbjct: 61 YGFMTVEEKALFERLIGVGGVGPKVALAALSVFTPQALVAAIAAQDVAAVSKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG S+ Q S ++ +A A AL+++G+ +A A Sbjct: 121 ASRIILELKG------SLDQGLASLFDEGEAPAARAAEQLRGAHEALLSMGFTAAEADLA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 LK DS +++ AL+ Sbjct: 175 ----LKGAPEGVSDSAVLQYALK 193 >gi|304312895|ref|YP_003812493.1| Holliday junction resolvasome DNA-binding subunit [gamma proteobacterium HdN1] gi|301798628|emb|CBL46860.1| Holliday junction resolvasome DNA-binding subunit [gamma proteobacterium HdN1] Length = 208 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 15/210 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + ++IDV GV Y + P+ T L +G+ L +R+D L Sbjct: 1 MITHLSGTLRHKQAPQLVIDVSGVGYELDAPMTTFYRLPSLGERVELLTHLVVREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+G +VA+ +LS I + V I + + +IPG+ K Sbjct: 61 FGFATQEERSLFRALIKVTGIGPKVALAILSGIEVPQFVRCINCHDVSALIRIPGVGKKT 120 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYG 173 A R++ E++ + SL+++ ++ + N +QAH A +AL+ LGY Sbjct: 121 AERLIVEMQDRLPRTLETSLTALQEESLLGENTRPQQAH-----RPLDEAEAALIALGY- 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + Q ++ L E Q+IR AL+ Sbjct: 175 KPQEAARCLNALNTEG--LSSEQLIRQALK 202 >gi|258645438|ref|ZP_05732907.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470] gi|260402789|gb|EEW96336.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470] Length = 201 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 9/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG + +++ I+ G+ Y ++ + + +G L +R+D I L Sbjct: 1 MIGYIKGKATVVSKEFCFIEAGGIGYRVFISEMSRQKI-HLGAPVRLLTYMAVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F++L SV +G +VAMG+LS + + V SI +N V+ ++PG+ K Sbjct: 60 YGFLTQEEYDLFLILISVSKIGPKVAMGILSVMEPADFVLSIRNRNLSVLTKLPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D+ A A +A L LGY T Sbjct: 120 AERLLVELKDK---VGDFAEGDIDEPESLAAGKPDESGIAADAAKYLRALGY----EDTE 172 Query: 181 VVSVLKKEK-NIADDSQIIRLALR 203 + VLKK D S ++ ALR Sbjct: 173 IQPVLKKLSIEYKDVSPLVSAALR 196 >gi|256371996|ref|YP_003109820.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans DSM 10331] gi|256008580|gb|ACU54147.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans DSM 10331] Length = 189 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIY--CPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 MIG + G + V+IDV GV Y ++ P TL + D C L++ T +R D I Sbjct: 1 MIGWLHGRVASAGRSPVVIDVAGVGYEVHVTAPWATLL---RRDDECELWIRTIVRADAI 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S +R+ F L V GVG ++A+G+L I EL +I ++ + I G+ Sbjct: 58 ALYGFASQAEREAFDALIGVSGVGPQLALGILGGIEGDELWTAIATEDLGRLTAIAGVGP 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMS 144 K A R++ EL A L+ V MS Sbjct: 118 KTAKRVVLELAPTAKRLAPVTGVPMS 143 >gi|163790795|ref|ZP_02185221.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7] gi|159873975|gb|EDP68053.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7] Length = 204 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG + + Y++++ G+ Y ++ P R S K+ T++V +R+D I Sbjct: 1 MFEYIKGIVTFVSPAYIVLENSGIGYQLFIANPFRFSS---KLNAEATIYVHQAVREDAI 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF ++Q ++ L SV G+G + + +L+ LV++I +++ + + PG+ Sbjct: 58 TLYGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDDHQGLVQAIENEDAAYLTKFPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQA 177 K AS+I+ +LKGK LS + Q S + +Q + S S A+ AL LGY + Sbjct: 118 KTASQIVLDLKGKLADLS--LTQAESTTDYQQELVLSTNYSHVTEAVEALEALGYSAKEI 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 + K K D +R ALR Sbjct: 176 KKIEPQIRKLNKESTD--AYLREALR 199 >gi|238786430|ref|ZP_04630350.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia bercovieri ATCC 43970] gi|238712664|gb|EEQ04756.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia bercovieri ATCC 43970] Length = 196 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 5/190 (2%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 VL++ GV Y + P+ L ++G +F + +R+D L+GF +R F L Sbjct: 8 VLLEANGVGYEVQLPMTCFYELPELGQEAIIFTQFIVREDAQLLYGFNDKQERALFRELI 67 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K + L+ Sbjct: 68 KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 127 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 + + + + + I A SALV LGY +A+ V + K AD Sbjct: 128 GDLFNNTGDITLPASSSSQLSDADIEAEAASALVALGYKPQEASRLVSKIAKPG---ADC 184 Query: 195 SQIIRLALRA 204 +IR ALRA Sbjct: 185 ETLIRDALRA 194 >gi|330683931|gb|EGG95698.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU121] Length = 200 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57 M IKG + L+ +V++DV GV Y I P R L K + F +L V R+D Sbjct: 1 MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTPNSYRFQKYLDKEVQIFTSLIV----REDA 56 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF+++ ++ F+ L V G+G + A+ +L+ T E+ ++I +N + + PGI Sbjct: 57 QLLYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDAYLTKFPGIG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +I+ +LKGK ++ +N+ A+ S A+ AL LGY + + Sbjct: 117 KKTARQIVLDLKGKVQITEENTDTLLNVMNESNAN----ESMIKEAMLALEALGYSK-RE 171 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V VL K+ N+ + +++ L+ + Sbjct: 172 LSKVEKVL-KQSNMESVDEAVKIGLQTL 198 >gi|328473203|gb|EGF44051.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 10329] Length = 204 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + L D+ + A S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPTDSASASSNSAEEEAVSALLALGYKPTQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + + Q+IR AL+++ Sbjct: 178 ASKVVSQIAKPDMS---SEQLIREALKSM 203 >gi|28897825|ref|NP_797430.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD 2210633] gi|260876984|ref|ZP_05889339.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AN-5034] gi|260901352|ref|ZP_05909747.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ4037] gi|31076902|sp|Q87QU8|RUVA_VIBPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28806038|dbj|BAC59314.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD 2210633] gi|308093747|gb|EFO43442.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AN-5034] gi|308109588|gb|EFO47128.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ4037] Length = 204 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + L D+ + A S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + + Q+IR AL+++ Sbjct: 178 ASKVVSQIAKPDMS---SEQLIREALKSM 203 >gi|298206830|ref|YP_003715009.1| Holliday junction DNA helicase motor protein [Croceibacter atlanticus HTCC2559] gi|83849464|gb|EAP87332.1| Holliday junction DNA helicase motor protein [Croceibacter atlanticus HTCC2559] Length = 193 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + +++D GV Y + + T + K + +F +R+D L Sbjct: 1 MITQLAGQLIEKNPTNIIVDCGGVGYFVNISLHTFGLI-KNEECVKIFTHLQVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL V G+GA A +LS +T ++ E+I + I + GI +K Sbjct: 60 FGFAEKAEREVFRLLIGVSGIGASTARTMLSSLTPQQVTEAISQGDVATIQSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K +++ + + S N ++ A+SAL LGY + Q+ Sbjct: 120 AQRVIIDLKDKILNVVGLDEVLPSQGNTQKEE----------ALSALETLGYTRKQSDKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK + + ++ II+LAL+ + Sbjct: 170 VAGILKTDPEASVET-IIKLALKKL 193 >gi|251798377|ref|YP_003013108.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2] gi|247546003|gb|ACT03022.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2] Length = 212 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 76/131 (58%), Gaps = 2/131 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + +YV++DV+ V Y ++ P + GK G T+++ H+R+D I L Sbjct: 1 MIDFLRGLISHVESEYVVLDVRDVGYQVFTP-NPYAFAGKEGT-VTIYIHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F L V G+G RVA+G+L+ ++ +I +N + ++PGI K Sbjct: 59 YGFESREEQTLFRKLLEVSGIGPRVALGILAGGRPDAVIGAIQQENIAFLTRLPGIGKKT 118 Query: 121 ASRIMTELKGK 131 A R++ +LK K Sbjct: 119 AQRMILDLKDK 129 >gi|58336747|ref|YP_193332.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus NCFM] gi|227903308|ref|ZP_04021113.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796] gi|75358012|sp|Q5FLX3|RUVA_LACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58254064|gb|AAV42301.1| helicase Holliday junction [Lactobacillus acidophilus NCFM] gi|227868937|gb|EEJ76358.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796] Length = 195 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 13/179 (7%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YV++DV G+ Y ++ P K G +++E +R I L+GF D+ F+ L Sbjct: 16 YVVVDVNGIGYKVFSPT---PFAYKQGQKAKVYIEQIVRDTGITLYGFQDQDDKGLFLKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV G+G + AM +++ + L E+I K + + PG+ K AS+I+ +LKGK L Sbjct: 73 LSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---L 129 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 V + N E+ S A+N A+ AL+ LGY Q + +++ E + AD Sbjct: 130 GDYVARLDKPENGEEI------SPALNDALLALIALGYTQKEVDRITPKLVEIEADTAD 182 >gi|300088237|ref|YP_003758759.1| Holliday junction DNA helicase RuvA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527970|gb|ADJ26438.1| Holliday junction DNA helicase RuvA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 195 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 17/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG L D+V+++V GV Y ++ TLS + G+ L+ +R+D + L Sbjct: 1 MISTLKGKAALLGADWVIVEVGGVGYKVFVSTATLSQIQNAGEI-RLYTHLQVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + F + V G+GAR+A+ +LS +L I N+ ++ +PG+ K Sbjct: 60 FGFLTFEELGIFETMLEVSGIGARLALALLSAFKPEDLANIIATGNADMLCTVPGVGKKT 119 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 ASRI+ ELK K A + S+ + V+ + ++AL LGY +A Sbjct: 120 ASRIVLELKDKVARNWSAAPAGEGGAVDN-------------DVMAALTALGYSGAEAAR 166 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AVV++ + K ++ IRLAL +S Sbjct: 167 AVVALPRDGKLTLEEK--IRLALAGLS 191 >gi|271500732|ref|YP_003333757.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586] gi|270344287|gb|ACZ77052.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586] Length = 205 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L +G +F +R+D L Sbjct: 1 MIGRLRGIIVEKQPPQVLLEVGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ Q + ++PG+ K Sbjct: 61 FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + A + P A +ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPAATGNTTPETDPLAEAEAALVALGYKPQEAG 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V + AD +IR ALRA Sbjct: 181 RMVSKV---SRPGADCETLIRDALRA 203 >gi|269795058|ref|YP_003314513.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii DSM 10542] gi|269097243|gb|ACZ21679.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii DSM 10542] Length = 206 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + D +++V G+ Y++Y TL+ L ++G ++ +R+D + L Sbjct: 1 MIASLSGTVQTVRLDSAVLNVAGIGYLVYATPATLATL-RVGAEASVATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F Q+V GVG R+A+ +L+ T L ++ + K + ++PGI K Sbjct: 60 YGFSDDDERSVFEASQTVSGVGPRLALAMLAVHTPDGLRRALAGGDVKALTRVPGIGAKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL K + Q A + + ALV+LG+ A A Sbjct: 120 AQRLILELGDK-------LGQPTGLDGGSVAPTAGLGDQRDQVVEALVSLGWSAKVAEDA 172 Query: 181 VVSVLKKEK----NIADDSQIIRLALRAI 205 + +VL + +D ++R AL+ + Sbjct: 173 IGTVLAESGATSVTTSDVPVVLRSALKVL 201 >gi|210635285|ref|ZP_03298481.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279] gi|210158446|gb|EEA89417.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279] Length = 208 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 16/181 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + +IDV GV + + T + L ++G L+ +R+D L Sbjct: 1 MISQLHGTVAEATPSMAVIDVNGVGFELGISGTTAAGLPQVGGKVLLYTRMVVREDSCTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L +V GVGA++A+ +L+ + +L ++ ++ K +A +PG+ K Sbjct: 61 FGFASKDERTMFDKLVAVSGVGAKLALAILTTFSVPQLYAVVMAEDDKGMATVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAI----SALVNLG 171 A R++ ELKG +D S A +P A NA+ +AL+++G Sbjct: 121 AQRLILELKG-------AFSKDRSLAGSAVAASIPLPLDVARPVAPNAMDDASAALLSMG 173 Query: 172 Y 172 + Sbjct: 174 F 174 >gi|315187235|gb|EFU20992.1| Holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM 6578] Length = 197 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G G+ + VLI+ G+ + I P LS L + GD L+V + R+D + L Sbjct: 1 MLYSVRGVYRGVDGEKVLIETGGLTWEIDVPSSILSQLPEPGDSLLLYVYLYHREDVLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISM 118 GF S +R+ F+ L VQGVG R A+ ++S + E I+QN + +A+ PGI Sbjct: 61 IGFASREERRLFLDLLKVQGVGPRQALRIISSVPVPIFRE--IIQNEDLARLAKTPGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A +++ LKG S V+Q K H + AL +G+ + +A Sbjct: 119 KTAQKLLLTLKG------SYVKQGPGGTEKAGPH--------RELVEALAEMGFDRSRAE 164 Query: 179 TAVVSVLKK----EKNIADDSQIIRLAL 202 + + ++++ E + +I+R A+ Sbjct: 165 SVLPDIIQEVSGGESVEGKEQEILRRAI 192 >gi|303249145|ref|ZP_07335385.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans JJ] gi|302489470|gb|EFL49417.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans JJ] Length = 202 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + + Y +++ GV Y + P + L G +LFV T +R+D Sbjct: 1 MIGYIEGRVVVRRDRYAIVLTPGGVGYELELPGPVAASLPAPGGQASLFVHTVVREDAFE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + DR+ F +L + +G + A+ +LSR TA +L + + + Q+ GI K Sbjct: 61 LFGFATIEDRETFRILIGITKLGPKTALAILSRYTADDLARIVATADLDALTQVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL K ++ + A I A + ++ L NLGY + A Sbjct: 121 SAQRILIELTYK-------LEGQAATAAAVTAPIPGGGVLA-DVVAGLTNLGYPEADARR 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 +VL E ++ D + +R AL+ ++ Sbjct: 173 VGTAVLDDEPDL-DVAGALRQALKRLAS 199 >gi|302527851|ref|ZP_07280193.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4] gi|302436746|gb|EFL08562.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4] Length = 198 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++V GV + TL+ L + G+ L +R+D + L Sbjct: 1 MISSVRGEVLSVGLDHVVVEVGGVGLAVQATPATLATL-RRGEQTRLHTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + R+ F LLQ+V G+G R+A+ L+ + +L +++ N V+ Q+PGI K Sbjct: 60 FGFAEEDARELFGLLQTVSGIGPRLALATLAVLEPDKLRAALVEGNITVLTQVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQATT 179 A R+ EL+ K +L A + + P + + AL LG+ QA Sbjct: 120 AERLSLELRDKVTALG----------GASDAPVVTAPGALRGEVVEALAGLGFPAKQAEQ 169 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV VL E + S ++R AL A+ Sbjct: 170 AVDKVL-SEGDGHTTSSVLRAALAAL 194 >gi|114566956|ref|YP_754110.1| Holliday junction resolvasome DNA-binding subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318040|sp|Q0AX15|RUVA_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114337891|gb|ABI68739.1| Holliday junction DNA helicase subunit RuvA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 199 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D ++IDV GV Y + R L + G+ + + +++ +L Sbjct: 1 MIAFLKGAVFERRPDSIIIDVNGVGYEVNIHSRLFPRLPQRGEPILIHTFLQVLENEFKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + + F L +V G+G++ A+ VLS + +I Q+ K + +IPG+ K Sbjct: 61 FGFLDQDELRLFKTLLTVSGIGSKGALAVLSTMEPLVFYRAIASQDEKTLVRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L V V KEQ + + AL LGY + + A Sbjct: 121 AQRMIFELQDKVPELKLV------EVEKEQRPLLD------ELMEALEILGYSRSEVLPA 168 Query: 181 VVSVLKKEK--NIADDSQIIRLALRA 204 ++ + + ++ NI +++ I+L L+A Sbjct: 169 IMDLNRNKQLGNIVEEN--IKLVLKA 192 >gi|41407135|ref|NP_959971.1| Holliday junction DNA helicase motor protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465009|ref|YP_882656.1| Holliday junction DNA helicase RuvA [Mycobacterium avium 104] gi|81414560|sp|Q741Q1|RUVA_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230566|sp|A0QIB8|RUVA_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|41395486|gb|AAS03354.1| RuvA [Mycobacterium avium subsp. paratuberculosis K-10] gi|118166296|gb|ABK67193.1| holliday junction DNA helicase RuvA [Mycobacterium avium 104] Length = 199 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFTDAETRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGDVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + N H P + ALV LG+ QA A Sbjct: 120 AERMVLELRDKIGAAGAAGAPAGAARN---GHAVRGP-----VVEALVGLGFAAKQAEEA 171 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 VL E A S +R AL Sbjct: 172 TDKVLAAEPE-AGTSGALRAAL 192 >gi|239817626|ref|YP_002946536.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110] gi|259495659|sp|C5CM11|RUVA_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239804203|gb|ACS21270.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110] Length = 190 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + V++D GV Y + P+ T L G+ +L +R+D L Sbjct: 1 MIGKLTGILAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG R A+G+LS ++ EL ++I Q + +IPGI K Sbjct: 61 YGFGTAEERAAFRQLIKISGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E L + + QA I + ALV LGY +A A Sbjct: 121 AERLLLE---LKGKLGADIGLPAHAATDAQADI----------LQALVALGYSDKEAALA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L K+ + S+ I+LAL+A++ Sbjct: 168 -LKALPKDATV---SEGIKLALKALA 189 >gi|206889338|ref|YP_002248715.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio yellowstonii DSM 11347] gi|226698744|sp|B5YKF0|RUVA_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|206741276|gb|ACI20333.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 190 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 21/202 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG + + D ++I G+ Y + PIR + + + +F ++++ I + Sbjct: 1 MLDFIKGKVITVKPDKIVIQTGGIGYSVKIPIRVSRYINR-DEETQIFTSLIVKEESIEI 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +R F L + G+G ++A+ +LS L + I ++ K +++IPGI K Sbjct: 60 YGFLESSERDLFEELIKIAGIGPKMAINILSTYDRETLYKIIDHEDIKSLSKIPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+G SL K+Q + + +SAL+NLGY + +A Sbjct: 120 AQRILLELRGILPSLQ---------YEKDQKY--------DDILSALLNLGYKRLEAKEV 162 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + + EK D++ IIR +L Sbjct: 163 LDKIYNNEK---DEATIIRESL 181 >gi|224541319|ref|ZP_03681858.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM 15897] gi|224525756|gb|EEF94861.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM 15897] Length = 204 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 22/183 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG I GLY D+++ID G+ Y ++ P K GD T+++ +++D + Sbjct: 19 MYSYIKGIIAGLYSDHIVIDNHGIGYEVHVSNPYNF-----KKGDDATVYIYQQVKEDDL 73 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF +++ F L V+G+G + A+G+L+ ++++I +N + +IPGI Sbjct: 74 TLFGFKKKEEKELFQKLILVKGIGCKTAIGILATGEIDAIIDAIEGKNIAYLKKIPGIGP 133 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A +I+ +L GK +K P + A L+ LGY Q Sbjct: 134 KAAQQIILDLHGK--------------FDKRAMKPLGSPDYE-EATEVLIALGYKQSDVE 178 Query: 179 TAV 181 A+ Sbjct: 179 KAM 181 >gi|119944489|ref|YP_942169.1| Holliday junction DNA helicase RuvA [Psychromonas ingrahamii 37] gi|166230588|sp|A1SSV5|RUVA_PSYIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119863093|gb|ABM02570.1| Holliday junction DNA helicase subunit RuvA [Psychromonas ingrahamii 37] Length = 207 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 4/188 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ + L G ++ +R+D L Sbjct: 1 MIGRLRGVLLEKQPPEVLIEVSGIGYEVQLPMSSFYALPDAGQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V+ I + ++PG+ K Sbjct: 61 YGFADKHERAMFRELIKVNGVGPKLALAILSGMSANQFVQCIHNDAVTTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + + D E + + + AISALV+LGY Sbjct: 121 AERLVVEMKDRLKNWTGADLLTPASDKMVFENEFTNSAASGNAKDEAISALVSLGYKPVL 180 Query: 177 ATTAVVSV 184 A A+ V Sbjct: 181 AEKAIQQV 188 >gi|86608038|ref|YP_476800.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-2-3B'a(2-13)] gi|123738043|sp|Q2JNW8|RUVA_SYNJB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|86556580|gb|ABD01537.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 204 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 6/176 (3%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 ++VQG+ Y + P R L L +G+ +F +R+ ++ L+GF S +R F+ L V Sbjct: 22 VEVQGIGYRVKAPGRFLKQLPAVGEPVRVFTHLVVRETELVLYGFGSPAERDLFVELIKV 81 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 GVG + + +L+ ELV++++ +N ++++ PG+ K A R+ ELK K Sbjct: 82 SGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVGHKTAQRLALELKTKLAHW--- 138 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 +Q M ++ A MP AL+ LGY Q A + L +D Sbjct: 139 -RQGMGVADQPLAGGPPMP-IREEVEMALLALGY-STQEIQAALQALPTHPRPTED 191 >gi|149277483|ref|ZP_01883624.1| Holliday junction DNA helicase [Pedobacter sp. BAL39] gi|149231716|gb|EDM37094.1| Holliday junction DNA helicase [Pedobacter sp. BAL39] Length = 194 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 15/190 (7%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 Y++++ G+ Y I + T S LG + + C ++ H+++D L+GF + +R+ F+ L Sbjct: 16 YIVVEAGGIGYHINISLNTYSLLGDM-ERCKIYTWLHVKEDAHTLYGFAEEGERRLFLHL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL--KGKAI 133 SV G+GA A +LS IT E+ +I+ + +I +I GI K A R++ EL K K Sbjct: 75 ISVSGIGANTARMMLSSITPIEIQTAIVNGDLPLIQRIKGIGAKSAQRLVLELQDKLKKE 134 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 S++ ++ +E+ A+SAL+ LG+ + A A+ + +K Sbjct: 135 GSGSLIAAPLNHTVREE------------ALSALMMLGFAKQPAEKALDNAVKTGGVELS 182 Query: 194 DSQIIRLALR 203 Q+I++AL+ Sbjct: 183 VEQMIKIALK 192 >gi|20807635|ref|NP_622806.1| Holliday junction resolvasome DNA-binding subunit [Thermoanaerobacter tengcongensis MB4] gi|22001976|sp|Q8RAN3|RUVA_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|20516178|gb|AAM24410.1| Holliday junction resolvasome DNA-binding subunit [Thermoanaerobacter tengcongensis MB4] Length = 187 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 77/142 (54%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + D+V+ID+ G+ I+ P T+ L G+ L+ ++R+D ++ Sbjct: 1 MIEYIRGIIEDIGPDHVIIDLMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS + ++++ + K++ PGI K Sbjct: 61 FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD 142 A RI+ ELK K V ++D Sbjct: 121 AERIILELKDKVPKEVVVPKED 142 >gi|303328183|ref|ZP_07358621.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3] gi|302861513|gb|EFL84449.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3] Length = 203 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQG-VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + LI +G V Y + P TL+ L G+ L+ +R+D + Sbjct: 1 MIAYLEGRLAETWGNACLIVTEGGVGYEVALPAHTLAALPDRGEQLALYTSLAVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S +RQ F +L S+ VGAR A+ +LS +L ++ + + ++ GI K Sbjct: 61 LFGFASFEERQTFEVLVSISKVGARTALAILSIFRPDDLRRLVLEDDVLALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A + ELK K + + V Q + + + + + L NLGY +++ Sbjct: 121 TAQHVFLELKYK-LKVEDVPQAAVLAASGRPGSVFR------DVLDGLANLGYAEEECAP 173 Query: 180 AVVSVLKKEKNI 191 V +L +E ++ Sbjct: 174 LVKKILHEEPDL 185 >gi|254976401|ref|ZP_05272873.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-66c26] gi|255093787|ref|ZP_05323265.1| Holliday junction DNA helicase RuvA [Clostridium difficile CIP 107932] gi|255315538|ref|ZP_05357121.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-76w55] gi|255518201|ref|ZP_05385877.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-97b34] gi|255651317|ref|ZP_05398219.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-37x79] gi|260684381|ref|YP_003215666.1| Holliday junction DNA helicase RuvA [Clostridium difficile CD196] gi|260688040|ref|YP_003219174.1| Holliday junction DNA helicase RuvA [Clostridium difficile R20291] gi|306521149|ref|ZP_07407496.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-32g58] gi|260210544|emb|CBA65075.1| holliday junction DNA helicase [Clostridium difficile CD196] gi|260214057|emb|CBE06222.1| holliday junction DNA helicase [Clostridium difficile R20291] Length = 200 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 12/183 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 1 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS ++ +L I+ ++ +++ PG+ K Sbjct: 60 CGFVSREELKMFELLTSVSKIGPKVALSILSFASSAQLGAYILSEDIGKLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178 A RI+ ELK K D + + E + P+ ++ ALV LGY ++ Sbjct: 120 AERIVLELKDKV---------DKNNIEFEPTLLSQKPTLISQDESVDALVALGYTLSESK 170 Query: 179 TAV 181 AV Sbjct: 171 EAV 173 >gi|282897835|ref|ZP_06305832.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9] gi|281197319|gb|EFA72218.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9] Length = 214 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 1 MIGKIKGNIEGL----YEDYVL-IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ ++L ++V G+ Y +Y P R + L GD +F +R+ Sbjct: 1 MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVTHIFTHYQIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+G +A+ ++ + ELV++II N+ ++ Q PG Sbjct: 61 ELPILYGFSSPAERDLFRHLLSVTGIGTAMAISLIDTLELPELVQAIISGNTIMLIQTPG 120 Query: 116 ISMKIASRIMTELKGKAI 133 + K A R+ ELKGK + Sbjct: 121 VGKKTAERLCLELKGKLV 138 >gi|238796296|ref|ZP_04639805.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC 43969] gi|238719741|gb|EEQ11548.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC 43969] Length = 196 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 7/191 (3%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 VL++ GV Y + P+ L +G +F + +R+D L+GF +R F L Sbjct: 8 VLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELI 67 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K + L+ Sbjct: 68 KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 127 Query: 137 SVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 + D++ + I A SALV LGY +A+ V + K AD Sbjct: 128 GDLFNNTGDITLPASTSSQISDA-DIEAEAASALVALGYKPQEASRLVSKIAKPG---AD 183 Query: 194 DSQIIRLALRA 204 +IR ALRA Sbjct: 184 CETLIRDALRA 194 >gi|297621995|ref|YP_003710132.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia chondrophila WSU 86-1044] gi|297377296|gb|ADI39126.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia chondrophila WSU 86-1044] Length = 202 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 29/201 (14%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 +++ G+ Y ++ P T L +IG L +R+ L+GF +R F L + Sbjct: 18 ILETGGIGYKVHIPASTYPKLPQIGQEALLHTSMVVREVSQTLYGFFYSEERDLFEELTT 77 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V G+G ++A+ ++ ++ E+ +I Q +I+++PGI K A R++ EL+ K Sbjct: 78 VSGIGPKIALALIGHLSVEEMHAAIGNQEVAMISKVPGIGKKTAQRLVIELRDKV----- 132 Query: 138 VVQQDMSCVNKEQAHICSMPS-FAI------------NAISALVNLGYGQDQATTAVVSV 184 ++ S+PS FAI +A+SAL+NLGY Q A A+ Sbjct: 133 -----------QKGGKYSLPSDFAIQVGTDSRGQKIADAMSALLNLGYNQSTAQKALKKS 181 Query: 185 LKKEKNIADDSQIIRLALRAI 205 L D +++I AL+ + Sbjct: 182 LSNFPETIDLTELITDALKNV 202 >gi|319795920|ref|YP_004157560.1| holliday junction DNA helicase ruva [Variovorax paradoxus EPS] gi|315598383|gb|ADU39449.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus EPS] Length = 190 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + V++D GV Y + P+ T L G+ +L +R+D L Sbjct: 1 MIGKLTGVLAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG R A+G+LS ++ EL ++I Q + +IPGI K Sbjct: 61 YGFGTAEERAAFRQLIKITGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E L + + + QA I + AL+ LGY +A A Sbjct: 121 AERLLLE---LKGKLGADIGLPTHAASDAQADI----------LQALIALGYSDKEAALA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L K+ + S+ I+LAL+A++ Sbjct: 168 -LKALPKDATV---SEGIKLALKALA 189 >gi|91789933|ref|YP_550885.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666] gi|123164397|sp|Q124Q5|RUVA_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91699158|gb|ABE45987.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666] Length = 190 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + VL+D GV Y + P+ T L +G+ +L +R+D L Sbjct: 1 MIGRISGQLAEKNPPEVLVDCNGVGYEVLVPMSTFYNLPGLGEKVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVG R A+ VLS ++ EL +++ Q + I ++PGI K Sbjct: 61 YGFGSATERAAFRQLIKISGVGPRTALSVLSGMSVEELAQAVTHQEAGRIIKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ L + D+ + S + ALV LGY A A Sbjct: 121 AERLLL-------ELKGKLGADIGVQVSVSSDSQSD------ILQALVALGYSDRDAALA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L K+ ++D I+LAL+A++ Sbjct: 168 -LKALPKDIGVSDG---IKLALKALA 189 >gi|225352127|ref|ZP_03743150.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157374|gb|EEG70713.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 205 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 106/210 (50%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G ++ + +I+V GV Y P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLHGQVDFIDAASAIIEVGGVGYETRMPSADLASM-HAGQTVKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +A+ PG+ K Sbjct: 60 YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLAKAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG +I LS + + E A + + L++LG+ Q A A Sbjct: 120 AQKIILELKG-SIDLSQIEGASKEVRSAEDAG-------SEQVVEGLMSLGWRQQDALHA 171 Query: 181 VVSVLKKEK---NIADD--SQIIRLALRAI 205 V +V + + DD ++++LAL ++ Sbjct: 172 VQTVCESNHINVPLRDDDVPRVLKLALASL 201 >gi|219871499|ref|YP_002475874.1| holliday junction DNA helicase motor protein [Haemophilus parasuis SH0165] gi|219691703|gb|ACL32926.1| holliday junction DNA helicase motor protein [Haemophilus parasuis SH0165] Length = 171 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 8/168 (4%) Query: 38 LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97 L + + +F +R+D LFGF+ +R F L GVG ++A+ +LS ++ +E Sbjct: 7 LPDLNEDTMIFTHLVIREDAHLLFGFVQKQERMLFRELIKTNGVGPKLALAILSAMSVSE 66 Query: 98 LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP 157 + +I + + +IPGI K A R++ ELKGK S++ ++S + + ++ SM Sbjct: 67 FMSAIEQEELAKLIKIPGIGRKTAERLLVELKGK---FSTLFHHEISIL-QPSGNLLSMA 122 Query: 158 SFA-IN-AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 S + +N AI AL++LGY A V V +K ++ ++ Q+IR AL+ Sbjct: 123 SMSPVNEAIDALISLGYKAADAEKMVKKVNRKSESTSE--QLIREALK 168 >gi|153839740|ref|ZP_01992407.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ3810] gi|149746738|gb|EDM57726.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ3810] Length = 204 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI++ G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEINGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + L D+ + A S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + + Q+IR AL+++ Sbjct: 178 ASKVVSQIAKPDMS---SEQLIREALKSM 203 >gi|210622015|ref|ZP_03292958.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275] gi|210154460|gb|EEA85466.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275] Length = 200 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 17/201 (8%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 IKG IE + D + ID + Y I T + ++G+ +F + +R+D++ L GF Sbjct: 5 IKGTIEEIGFDSITIDNNDIGYSILVSSNTAAQY-QVGEKAKVFTKLIVREDEMFLCGFH 63 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S+ +R F +L S+ +G +V + +LS T +L I+ ++ I++ PG+ K A RI Sbjct: 64 SEEERNMFDMLTSISKIGPKVGLSILSFATPKQLGAYILSEDIAKISKAPGVGKKTAERI 123 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---AISALVNLGYGQDQATTAV 181 + ELK K D + + E + + P+ AI+ ++ AL+ LGY Q +A AV Sbjct: 124 ILELKDKI---------DKTQIEFEPTLLEAQPA-AISIDESVDALIALGYTQAEAKEAV 173 Query: 182 VSVLKKEKNIADDSQIIRLAL 202 K +K + +IIR +L Sbjct: 174 K---KTKKPGMETEEIIRKSL 191 >gi|212638555|ref|YP_002315075.1| Holliday junction DNA helicase RuvA [Anoxybacillus flavithermus WK1] gi|226725432|sp|B7GFM6|RUVA_ANOFW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212560035|gb|ACJ33090.1| Holliday junction resolvasome, DNA-binding subunit [Anoxybacillus flavithermus WK1] Length = 197 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +YV+I+ GV Y I+ P S ++ ++R+D + L Sbjct: 1 MIEFIRGYVDYVCPEYVVIENNGVGYQIFTP-NPFSFQMNKQQQIVVYTYQYVREDVLAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ +LVE+I +N + + + PG+ K Sbjct: 60 YGFHTRQERMLFAKLLQVSGIGPKGALAILAAGQLEQLVEAIEAENDQFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L ++V + E + S AI A+ A LGY D+ Sbjct: 120 ARQMILDLKGK---LQAIVPDAFPNLFTEPLEETNALSEAIEALKA---LGYA-DKEIQK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VV +L++E+ I+LAL+ + Sbjct: 173 VVPMLRQER--LSTEGYIKLALQKL 195 >gi|296270037|ref|YP_003652669.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM 43833] gi|296092824|gb|ADG88776.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM 43833] Length = 206 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 18/177 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + + +I+V G +++C TL+ L ++G+ L +R+D + L Sbjct: 1 MIASVAGKVAAIGPETAVIEVGGFGVLVHCTPATLAGL-RVGEPARLATALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R F L +V GVG R+A+ +L+ + L ++ + K + +PGI K Sbjct: 60 YGFASDDERAIFESLLTVNGVGPRLALAMLAVHSPNALRTAVASGDVKALTMVPGIGPKS 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGY 172 A RIM EL+ G A + ++ + + +EQ H + LV LGY Sbjct: 120 AQRIMLELRDRLGPARATAAGMPDGRGGPSPWREQVH------------AGLVGLGY 164 >gi|320537837|ref|ZP_08037755.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421] gi|320145314|gb|EFW37012.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421] Length = 203 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 18/213 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + I+ G+ + + ++L G +G +F + R+DQ+RL Sbjct: 1 MFNSINGVLTEKSSESICIETHGIEWSVAVSAKSLDSFGMVGATVRVFTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V G+G + A+ +LS ITA L ++ + ++ IPG+ K Sbjct: 61 FGFPTREERALFLDLIKVDGIGPKQALRILSGITAENLETALEEGDVHLLQTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQAT- 178 A +++ LKG+ LS++ E S+P + I ALV +GY + AT Sbjct: 121 AQKMVLALKGQ---LSNI---------HEIGKSASIPQSEFEDIIQALVQMGYDRKAATE 168 Query: 179 --TAVVSVLKKE--KNIADDSQIIRLALRAISC 207 A S L+ + +++++ R A+ A+S Sbjct: 169 QVEAAASALRSKGANPQENENELFRSAIVALST 201 >gi|298491329|ref|YP_003721506.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708] gi|298233247|gb|ADI64383.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708] Length = 212 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 65/115 (56%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 ++V G+ Y + P R + L GD +F +R++ L+GF S +R F L SV Sbjct: 24 LEVNGLGYDLQVPQRLANQLTTTGDVVQIFTHYQVREEVPLLYGFSSPAERDLFRHLLSV 83 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 G+GA +A+ +L + ELV++II N++++ Q PG+ K A RI ELK K I Sbjct: 84 TGIGAALAITLLDTLELPELVQAIIAANTQILIQAPGVGKKTAERICLELKSKLI 138 >gi|289523150|ref|ZP_06440004.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503693|gb|EFD24857.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 196 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + E+ V++DV G I C LS L K TL + + L Sbjct: 1 MIKFVSGAVVSVEENIVVLDVSGFGMEIICSREALS-LCKPSKKVTLPTYLAVSESGPSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R++F++L++V+G+GAR A+ +L ++A EL+E I +N + + ++PG+ K Sbjct: 60 YGFGDDFEREFFLMLKNVKGMGARTAISILRWLSARELIEIIAEKNLEKLEKVPGVGRKT 119 Query: 121 ASRIMTELKGKAISL 135 A RI ELK K L Sbjct: 120 AERICFELKDKTKKL 134 >gi|221134420|ref|ZP_03560725.1| Holliday junction DNA helicase RuvA [Glaciecola sp. HTCC2999] Length = 207 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 21/216 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I G + ++I G+ Y + + ++ L G T+F +R+D L Sbjct: 1 MIGLITGTLLAKQPPEIMIQAGGIGYEVSMSMHSIYALPTEGQPVTVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R F L GVG ++A+ +LS ++ +L+ ++ ++ + +IPG+ K Sbjct: 61 FGFIEKEERTVFRELIKANGVGPKLAITILSGMSVQDLIRAVGYEDVSSLVKIPGVGKKT 120 Query: 121 ASRIMTELKGK-----------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 A R++ ELK + A++L V D S I + A+SALV Sbjct: 121 AERLVVELKDRLAKLTLTQPNEALTLPVVSATDGST-------IIPINDTREEALSALVA 173 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LGY A+ + SV + Q+IR AL+A+ Sbjct: 174 LGYKAPVASKIIQSVY---DDTMSSEQLIRAALKAM 206 >gi|255101977|ref|ZP_05330954.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-63q42] gi|255307845|ref|ZP_05352016.1| Holliday junction DNA helicase RuvA [Clostridium difficile ATCC 43255] gi|328887746|emb|CAJ69694.2| Holliday junction ATP-dependent DNA helicase RuvA [Clostridium difficile] Length = 200 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 1 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS + +L I+ ++ +++ PG+ K Sbjct: 60 CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178 A RI+ ELK K D + + E + P+ ++ ALV LGY ++ Sbjct: 120 AERIVLELKDKV---------DKNNIEFEPTLLSQKPTLISQDESVDALVALGYTLSESK 170 Query: 179 TAV 181 AV Sbjct: 171 EAV 173 >gi|157371017|ref|YP_001479006.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568] gi|167012663|sp|A8GFI8|RUVA_SERP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157322781|gb|ABV41878.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568] Length = 203 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L+ + + S + A + A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPTAAQAAELDAEAEAASALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 VSKIAKPG---ADCETLIRDALRA 201 >gi|307564556|ref|ZP_07627096.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A] gi|307346714|gb|EFN92011.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A] Length = 205 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 13/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57 MI IKG + + +++ G+ Y I + T S + D E T R D Sbjct: 1 MIEYIKGELIEMTPAIAIVEAYGIGYAINISLNTYSDIQGKKDIKLYIYEAIITGGRDDS 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF S +R + LL +V GVGA A +LS T +EL I +++ + GI Sbjct: 61 YTLYGFSSKQERSLYKLLITVSGVGANTARMILSSFTPSELCNVISNGEERMLKSVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMS---CVNKEQAHICSMPSFAINAISALVNLGYGQ 174 +K A RI+ +L+ K ++Q D++ VN ++ + AISAL LG+ Sbjct: 121 LKTAQRIIVDLRDK------IIQADIANELYVNTSSNNLNIDTAVKDEAISALTMLGFSP 174 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 ++ V+ VL K+ N+ + Q+++ AL+ I Sbjct: 175 VSSSKVVIEVLTKDANLPVE-QVVKQALKII 204 >gi|255311319|ref|ZP_05353889.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276] gi|255317620|ref|ZP_05358866.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276s] gi|296436034|gb|ADH18208.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9768] gi|296437895|gb|ADH20056.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11074] gi|297140395|gb|ADH97153.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9301] Length = 200 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R ++ + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSFRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176 A ++M +LK K +L + ++ V A+ SF I AL+NLG+ + D+ Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 T V L +E ++A+ ++ +ALR Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198 >gi|254478024|ref|ZP_05091408.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum DSM 12653] gi|214036028|gb|EEB76718.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum DSM 12653] Length = 187 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 76/142 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + D+V+ID G+ I+ P T+ L G+ L+ ++R+D ++ Sbjct: 1 MIEYIRGIIEDIGPDHVIIDFMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS + ++++ + K++ PGI K Sbjct: 61 FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD 142 A RI+ ELK K V ++D Sbjct: 121 AERIILELKDKVPKEVVVPKED 142 >gi|299141888|ref|ZP_07035023.1| holliday junction DNA helicase RuvA [Prevotella oris C735] gi|298576739|gb|EFI48610.1| holliday junction DNA helicase RuvA [Prevotella oris C735] Length = 205 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI IKG + L +++ GV Y + + T S + GK L+V T R Sbjct: 1 MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGIQGK--KAVKLYVHEALTTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF++ +R+ + LL +V GVGA A +LS ++ EL +I + K+I + G Sbjct: 59 DSFTLYGFVNKQERELYRLLITVSGVGANTARMMLSSMSPAELCNAIANGDEKMIKAVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I +K A R++ +LK K I S + D V +++ I + A++AL LG+ Sbjct: 119 IGLKTAQRVIVDLKDK-IMASGIA--DELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPA 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 VV++L+K+ ++ + Q+++ AL+ Sbjct: 176 PVAKVVVAILQKQADMPVE-QVVKEALK 202 >gi|290961821|ref|YP_003493003.1| Holliday junction DNA helicase [Streptomyces scabiei 87.22] gi|260651347|emb|CBG74469.1| holliday junction DNA helicase [Streptomyces scabiei 87.22] Length = 201 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 17/175 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V G+ + C TLS L + G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RRGQQAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI + Sbjct: 60 YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALIAVPGIGKRG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ ELK G+ + + V ++ ++Q H +AL+ LGY Sbjct: 120 AQKLLLELKDRLGEPVG-APAVGTPVTQGWRDQLH------------AALIGLGY 161 >gi|126700422|ref|YP_001089319.1| Holliday junction DNA helicase RuvA [Clostridium difficile 630] Length = 203 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 4 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS + +L I+ ++ +++ PG+ K Sbjct: 63 CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178 A RI+ ELK K D + + E + P+ ++ ALV LGY ++ Sbjct: 123 AERIVLELKDKV---------DKNNIEFEPTLLSQKPTLISQDESVDALVALGYTLSESK 173 Query: 179 TAV 181 AV Sbjct: 174 EAV 176 >gi|331663357|ref|ZP_08364267.1| holliday junction DNA helicase RuvA [Escherichia coli TA143] gi|331059156|gb|EGI31133.1| holliday junction DNA helicase RuvA [Escherichia coli TA143] Length = 188 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 3/188 (1%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 VLI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 VLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 61 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 62 KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 121 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + + + + A++ALV LGY +A+ V + + + A Sbjct: 122 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSET 178 Query: 197 IIRLALRA 204 +IR ALRA Sbjct: 179 LIREALRA 186 >gi|323342039|ref|ZP_08082272.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464464|gb|EFY09657.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 195 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 15/158 (9%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 DYV++D G+ Y ++C + L + F T H+R+D I LFGF+ + F Sbjct: 15 DYVVVDNHGIGYQVFCGNPEMVTLNESIIFHTY---QHVREDAIILFGFVEKRELDIFRQ 71 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L +V+GVG + + +LSR + ++V +I ++ + ++PG+ K+AS++M +LKGK I+ Sbjct: 72 LITVKGVGPKTGITILSRFSGDDIVRAIDQEDMAFLKKLPGVGPKMASQMMLDLKGKFIA 131 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 D K+ + A+ AL +LG+ Sbjct: 132 ------SDTPSTTKKALPLVD------EALDALGDLGF 157 >gi|332519991|ref|ZP_08396455.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4] gi|332044550|gb|EGI80744.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4] Length = 193 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI IKG + V+ID GV Y++ + T S +I D ++ + TH+ ++D Sbjct: 1 MITHIKGKMVEKNPTDVVIDCNGVGYLLNISLNTFS---QIPDQESIHLFTHLQVKEDAH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + +R+ F LL SV G+G A +LS +T ++ E I + +I I GI Sbjct: 58 SLYGFFTKGEREVFRLLISVSGIGTNTARTMLSSLTPKQIREGIATADVALIQSIKGIGA 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ +LK K + + + D VN+ + A+SAL LG+ + QA Sbjct: 118 KTAQRVILDLKDKILKIYDI---DEVSVNRNNTN-------KDEALSALEVLGFAKKQAE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 V ++ + A II+LAL+ Sbjct: 168 RVVDKIVVAQPE-ASVEAIIKLALK 191 >gi|146299412|ref|YP_001194003.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae UW101] gi|57236796|gb|AAW49008.1| RuvA [Flavobacterium johnsoniae UW101] gi|146153830|gb|ABQ04684.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae UW101] Length = 193 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 22/210 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + V+ID GV Y + + T S + DF L+ +++D L Sbjct: 1 MIAHLQGKLVEKNPTEVVIDCGGVGYHVNISLHTFSLIPN-ADFIKLYTHLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F +L SV G+GA +A +LS I +++ +I + VI I GI K Sbjct: 60 YGFVEKSEREIFRMLLSVSGIGAGIARTMLSSIEPRQIINAIASGDVGVIQSIKGIGNKT 119 Query: 121 ASRIMTELKGKAISLS-----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++ +LK K + L SVVQ + N+++ A+SAL LG+ + Sbjct: 120 AQRVILDLKEKVLKLYDLDEVSVVQNN---TNRDE------------ALSALEVLGFVR- 163 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + VV + KE A II+ AL+++ Sbjct: 164 KTSEKVVEKIVKEDPEATVETIIKKALKSL 193 >gi|283783300|ref|YP_003374054.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05] gi|283441415|gb|ADB13881.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05] Length = 209 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LI V GV Y Y P + LS L + G ++ + QD + L Sbjct: 1 MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ +Q V G+G +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDCLLQAISEGDVTSLSSAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG SL S + D S + Q++ + S I LV+LG+ Q A A Sbjct: 120 AQKIILELKG---SLDSSILAD-SSNDSTQSNKQIVDSSVQCVIEGLVSLGWRQVDAQRA 175 Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAI 205 V V + NI AD ++R+AL ++ Sbjct: 176 VEQVC-ADNNISTPISDADLPNVLRMALASL 205 >gi|75909032|ref|YP_323328.1| Holliday junction DNA helicase RuvA [Anabaena variabilis ATCC 29413] gi|123758778|sp|Q3M9A3|RUVA_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|75702757|gb|ABA22433.1| Holliday junction DNA helicase subunit RuvA [Anabaena variabilis ATCC 29413] Length = 213 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 5/138 (3%) Query: 1 MIGKIKGNIEGLYE---DYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + V++ +V G+ Y + P R L GD +F +R+ Sbjct: 1 MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV GVGA A+ +L + +LV++II N +++ Q PG Sbjct: 61 EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAI 133 + KIA RI ELK K I Sbjct: 121 VGKKIADRICLELKAKLI 138 >gi|222099496|ref|YP_002534064.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359] gi|61657322|emb|CAI44241.1| holliday junction DNA helicase [Thermotoga neapolitana] gi|221571886|gb|ACM22698.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359] Length = 191 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 21/184 (11%) Query: 23 GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82 G+ + I C +T L + + C L+ + QD + L+GF + F+ L V +G Sbjct: 27 GIVFEIACDTQTCEELEENRE-CYLYTFLSVSQDGVALYGFSDRKKKDLFLSLMKVSRLG 85 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD 142 + A+ +LS L+ I Q+ + +++IPGIS K A RI+ ELKGK S V +D Sbjct: 86 PKTALKILSSEDVDTLISMINSQDVEGLSKIPGISRKTAERIVMELKGK---FESTVLKD 142 Query: 143 MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLAL 202 + ++ ++ ALV+LGY + QA A+ VL K+ S++I+ AL Sbjct: 143 LKTYHE--------------SLEALVSLGYPEKQARKAIKEVL---KDGMSTSEVIKEAL 185 Query: 203 RAIS 206 R +S Sbjct: 186 RILS 189 >gi|294635834|ref|ZP_06714289.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685] gi|291090806|gb|EFE23367.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685] Length = 195 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 VL++ GV Y + P+ L + G +F +R+D L+GF + +R F L Sbjct: 10 VLLEAGGVGYEVQMPMTCFYELPQPGSEAVIFTHFVVREDAQLLYGFNNKQERALFRELI 69 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 V GVG ++A+ +LS ++A + V ++ + + ++PG+ K A R++ E+K + LS Sbjct: 70 KVNGVGPKLALAILSGMSAQQFVAAVEREEVAALIKLPGVGKKTAERLVVEMKDRFKGLS 129 Query: 137 S---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 D+ + QA + A++AL+ LGY +A+ V V AD Sbjct: 130 GDLFTPSDDLPPSAQPQAQADA----EGEAVAALIALGYKPQEASRLVNRVASVG---AD 182 Query: 194 DSQIIRLALRA 204 +IR ALRA Sbjct: 183 SETLIRDALRA 193 >gi|157364836|ref|YP_001471603.1| RuvA domain-containing protein [Thermotoga lettingae TMO] gi|157315440|gb|ABV34539.1| RuvA domain protein [Thermotoga lettingae TMO] Length = 186 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 21/202 (10%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 +KG + V++++ G I C I TL +IG L Q+ I ++GFL Sbjct: 3 VKGTVHSKNGSSVILEINGFLIKILCDIETLEK-AQIGQTVQLHTHLEFSQEGITIYGFL 61 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S F + V +G + A+ ++S ELV II Q+ + +++ PGI K A R+ Sbjct: 62 SKERLYVFEKILKVSKIGPKTALRIVSTSEPEELVHLIISQDVEKLSRFPGIGKKTAERL 121 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + ELK + + S +++S +AI ALV LG+G+ ++ A SV Sbjct: 122 IAELKDEEFEIKSDYSKELS-----------------DAIDALVALGFGKIESREAAKSV 164 Query: 185 LKKEKNIADDSQIIRLALRAIS 206 K QI++ AL+ +S Sbjct: 165 YHSSKKA---EQIVKEALKMLS 183 >gi|254429429|ref|ZP_05043136.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881] gi|196195598|gb|EDX90557.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881] Length = 200 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y + P+ L G TL +R+D L Sbjct: 1 MIGQLRGTLLEKRPPVLLLDVGGVGYEVEAPMTVFYDLPDAGAELTLHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L V GVG ++A+ +LS I A L I Q++ + ++PGI K Sbjct: 61 YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ + + V+ Q +AI+AL LGY +++ A Sbjct: 121 AERLVIEMSDRLDKIDGGPVSLPGRVDTRQPDDARS-----DAIAALEALGY-RNKDAAA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ E ++ + Q+IR AL++++ Sbjct: 175 AVAKAADEDGLSSE-QLIRKALKSLA 199 >gi|258653556|ref|YP_003202712.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM 44233] gi|258556781|gb|ACV79723.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM 44233] Length = 207 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 5/177 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++ D+ +I+V GV + L+ L + G+ L+ +R+D + L Sbjct: 1 MISSVRGEVLAIHLDHAVIEVGGVGLAVRTTPAALAEL-RRGESARLWTTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L+QSV GVG ++A+ +L+ + EL ++ ++ + + PGI K Sbjct: 60 FGFTTTAGKELFELVQSVSGVGPKIALALLAVLDPDELRRALSAGDTATLCRAPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL+ K + S + P ALV LG+ QA Sbjct: 120 AERLVLELRDKVGPVGSPAAGVAPVAGAASGSLAWRP----QVTDALVGLGFTAKQA 172 >gi|166154716|ref|YP_001654834.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis 434/Bu] gi|166155591|ref|YP_001653846.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335990|ref|ZP_07224234.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis L2tet1] gi|229560018|sp|B0B875|RUVA_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560020|sp|B0BCE0|RUVA_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|165930704|emb|CAP04201.1| holliday junction DNA helicase [Chlamydia trachomatis 434/Bu] gi|165931579|emb|CAP07155.1| holliday junction DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 200 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 M IKG + + YV+I+ G+ Y I R L L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHIDGSYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ---DQ 176 A ++M +LK K +L + ++ V A+ SF I AL+NLG+ + D+ Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEE-PVVPSSTAN----SSFK-EGIGALMNLGFSRLAADR 174 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 T V L +E ++A+ ++ +ALR Sbjct: 175 MMTEAVKELSEEASVAE---LLPIALR 198 >gi|319947801|ref|ZP_08021995.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4] gi|319438525|gb|EFV93451.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4] Length = 199 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + D +++ GV +++ L+ L + G L E +R+D + L Sbjct: 1 MIASIRGTVAEIGLDRCVVETGGVGVLVHATPAALAGL-RRGAEGMLHTELVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S RQ F+ +Q+V GVG R+A+ +++ + L+ ++ + K + +PG+ + Sbjct: 60 YGFDSVDARQLFLTVQTVSGVGPRLALAIVATLEPEALIRALGTGDVKALTLVPGVGKRT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK K + V D S V +A A AL LG+ +A Sbjct: 120 AERMVLELKDK---VGPVPDGDAASSVVGNGRA------PAATEVADALEGLGFSAAEAE 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 +VL + ++ D +Q +RLAL+++ Sbjct: 171 KTATAVLDSQPDL-DPAQALRLALKSLG 197 >gi|281426165|ref|ZP_06257078.1| holliday junction DNA helicase RuvA [Prevotella oris F0302] gi|281399741|gb|EFB30572.1| holliday junction DNA helicase RuvA [Prevotella oris F0302] Length = 205 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI IKG + L +++ GV Y + + T S + GK L+V T R Sbjct: 1 MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGIQGK--KAVKLYVHEALTTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF++ +R+ + LL +V GVGA A +LS ++ EL +I + K+I + G Sbjct: 59 DSFTLYGFVNKQERELYRLLITVSGVGANTACMMLSSMSPAELCNAIANGDEKMIKAVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I +K A R++ +LK K I S + D V +++ I + A++AL LG+ Sbjct: 119 IGLKTAQRVIVDLKDK-IMASGIA--DELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPA 175 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 VV++L+K+ ++ + Q+++ AL+ Sbjct: 176 PVAKVVVAILQKQADMPVE-QVVKEALK 202 >gi|320334037|ref|YP_004170748.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus maricopensis DSM 21211] gi|319755326|gb|ADV67083.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus maricopensis DSM 21211] Length = 200 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 9/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +I + G + + + +I GV Y + CP TL+ L ++ D L +R+D L Sbjct: 4 VIAYLTGTVRDVRDTSAVIVAGGVGYEVLCPAPTLAKL-RVNDTAELHTRMVVREDAWTL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LL SV GVG ++ + +LS + + I+ +SK++A + G+ K Sbjct: 63 YGFQDQDSIRLFDLLTSVTGVGPKLGLALLSAMPPHVIAGGILGSDSKLLASVSGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V + ++ + + +A+ AL+ LG+ + Q Sbjct: 123 AERLVLELQNK-------VPEHLAAASGRTTAPVVNSTVGQDAVEALLALGFREAQVRAV 175 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + +L + N D Q+IR +L Sbjct: 176 ISELLSADPNATAD-QLIRKSL 196 >gi|237751366|ref|ZP_04581846.1| holliday junction DNA helicase motor protein [Helicobacter bilis ATCC 43879] gi|229372732|gb|EEO23123.1| holliday junction DNA helicase motor protein [Helicobacter bilis ATCC 43879] Length = 189 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 18/181 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KGNIE L V ++V GV Y++ + T + L TL + +R+D L Sbjct: 1 MIVRLKGNIEKLLPTGVELEVSGVTYMVEISLLTSAALQN-KTHVTLEIAEIIREDSHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L V GVGA++A+ +LS + + + + N + + GI K+ Sbjct: 60 YGFETRREREVFLQLLKVNGVGAKIALMILSSYSVEQFLAIVQTNNLAALKGVKGIGTKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM EL G S+ Q + VN + AH ALV LG+ Q T A Sbjct: 120 AGKIMLELAGYTQSI-----QTPNNVNVQLAH------------EALVALGFKDTQITQA 162 Query: 181 V 181 + Sbjct: 163 L 163 >gi|78357366|ref|YP_388815.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90134880|sp|Q30YX6|RUVA_DESDG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78219771|gb|ABB39120.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 201 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQG-VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + E ++ QG V Y ++ P L+ L + G + ++ T +R+D + Sbjct: 1 MIAYIEGRVAEVTEQSCVVVTQGGVGYEVHLPSHLLARLPEQGAAVSFYIHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +RQ F++L S+ VGA+ A+ VLS +L + + + ++ GI K Sbjct: 61 LYGFSGWDERQTFLVLISISKVGAKTALAVLSLYRPDDLRRIVADDDVTALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQAT 178 A I+ ELK K + + +P + +A+ AL NLGY +++A Sbjct: 121 SAQHILLELKYKL---------KVESLPASAGLAAGVPGSVLRDAVQALGNLGYAEEEAA 171 Query: 179 TAVVSVLKKEKNI 191 + ++LK++ ++ Sbjct: 172 PVLKNILKQDPDL 184 >gi|307720862|ref|YP_003892002.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas autotrophica DSM 16294] gi|306978955|gb|ADN08990.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas autotrophica DSM 16294] Length = 189 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 14/181 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E YV ++VQG+ Y ++ + T S L K + +LF +R+D L Sbjct: 1 MIVGLHGKVEYKEPAYVHVNVQGIVYEVFISLHTFSALPK--EDVSLFTTQIIREDAQLL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +++ F L + GVG +VAM + S T ++ I ++ + ++PGI K Sbjct: 59 FGFMDMSEKKMFSRLIKINGVGPKVAMAICSTYTPSQFATVINNKDVNGVKKVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL G + + D + QA A AL LG+ +D+ + A Sbjct: 119 AGRILVELNG----FDAEILGDSATPQASQAF--------NEASEALEALGFKKDKISKA 166 Query: 181 V 181 + Sbjct: 167 L 167 >gi|302866772|ref|YP_003835409.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC 27029] gi|315503187|ref|YP_004082074.1| holliday junction DNA helicase ruva [Micromonospora sp. L5] gi|302569631|gb|ADL45833.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC 27029] gi|315409806|gb|ADU07923.1| Holliday junction DNA helicase RuvA [Micromonospora sp. L5] Length = 200 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +++V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIASVRGTVTATGPDHAVVEVGGIGLAVQCAPGTLADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +Q F LLQ+ GVG R+A VL+ T + ++I ++ + ++PGI K Sbjct: 60 YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELK 129 A R++ EL+ Sbjct: 120 AERLVLELR 128 >gi|294790877|ref|ZP_06756035.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304] gi|294458774|gb|EFG27127.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304] Length = 209 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 25/197 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR------ 54 MI ++G+I + D ++IDV GV + + R D L +H R Sbjct: 1 MIASLEGDILSIEPDGIVIDVNGVGFSVRMSAR---------DTAQLHAGSHERIITLMT 51 Query: 55 --QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 +D + L+GFL+ ++ F+ LQ V G+G RVAM +LS ++A EL +I + + + Sbjct: 52 VSRDALSLYGFLNPSSKKLFIQLQKVSGIGPRVAMAILSTLSAEELATAIRDNDVTALTR 111 Query: 113 IPGISMKIASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 PG+ K A +I+ EL G +L +Q ++Q H I LV+L Sbjct: 112 APGLGRKGAQKIILELHGTIDFTNLDPDQEQAAGHDTEKQDHNMR------QVILGLVSL 165 Query: 171 GYGQDQATTAVVSVLKK 187 G+ Q A A +K+ Sbjct: 166 GWQQRDAFGATKEAMKQ 182 >gi|251789856|ref|YP_003004577.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591] gi|247538477|gb|ACT07098.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591] Length = 205 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 13/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y ++ P+ L +G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLIEAGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ Q + ++PG+ K Sbjct: 61 FGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA------ISALVNLGYGQ 174 A R++ E+K + L+ D+ + + A A A +ALV LGY Sbjct: 121 AERLVVEMKDRFKGLNG----DLFNADSDMALPAQTGEAAPQADPQAEAEAALVALGYKP 176 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ V V + AD +IR ALRA Sbjct: 177 QEASRMVNKV---SRPGADCETLIRDALRA 203 >gi|227329529|ref|ZP_03833553.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 205 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 17/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS--------ALVNLGY 172 A R++ E+K + LS + +S + + P+ A + + ALV LGY Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIP------LASPATADSRVGEPEAEAAAALVALGY 174 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ + + + + AD +IR ALRA Sbjct: 175 KPQEASRMISKIARPD---ADCETLIRDALRA 203 >gi|304383692|ref|ZP_07366151.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella marshii DSM 16973] gi|304335216|gb|EFM01487.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella marshii DSM 16973] Length = 204 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHM----RQ 55 MI IKG + +I+ GV Y + + T + + GK L+V + R Sbjct: 1 MIEYIKGELSEATPALAVIEASGVGYALNISLNTYTSVQGK--KEVKLYVHEVLSAGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D L+GF + +R+ + LL SV GVGA A +LS +T EL I + +++ + G Sbjct: 59 DSFTLYGFFTRQERELYRLLISVSGVGANTARMILSAMTTAELCNVISTGDERMLKGVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQ 174 I +K A RI+ +LK K + SS + Q++ H+ + S + A+ AL LG+ Sbjct: 119 IGLKTAQRIIIDLKDKIV--SSGIAQELPTT---AGHVVATNSAVKDEAVGALTMLGFSP 173 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 ++ VV +LK ++ + Q+++ AL+ I Sbjct: 174 APSSKVVVEILKMHPDLPVE-QVVKQALKMI 203 >gi|255656790|ref|ZP_05402199.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-23m63] gi|296452380|ref|ZP_06894081.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP08] gi|296877729|ref|ZP_06901756.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP07] gi|296258710|gb|EFH05604.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP08] gi|296431262|gb|EFH17082.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP07] Length = 200 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 1 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS + +L I+ ++ +++ PG+ K Sbjct: 60 CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQDQAT 178 A RI+ ELK K D + + E + P+ ++ ALV LGY ++ Sbjct: 120 AERIVLELKDKV---------DKNNIEFEPTLLSQKPTLISQDESVDALVALGYTLAESK 170 Query: 179 TAV 181 AV Sbjct: 171 EAV 173 >gi|50121417|ref|YP_050584.1| Holliday junction DNA helicase RuvA [Pectobacterium atrosepticum SCRI1043] gi|81644878|sp|Q6D4A1|RUVA_ERWCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49611943|emb|CAG75392.1| holliday junction DNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 205 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 17/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS--------ALVNLGY 172 A R++ E+K + LS + +S + + P+ N + ALV LGY Sbjct: 121 AERLVVEMKDRFKGLSGDLFNSVSDIP------LTSPANVDNRVGEPEAEAAAALVALGY 174 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ + + + + AD +IR ALRA Sbjct: 175 KPQEASRMISKIARPD---ADCETLIRDALRA 203 >gi|281412224|ref|YP_003346303.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila RKU-10] gi|281373327|gb|ADA66889.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila RKU-10] Length = 188 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ + GV + I C ++T + K G+ C L ++ QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + S +DM ++ ++ ALV+LGY + QA Sbjct: 120 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALVSLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMKT---SELIKEALKFLS 186 >gi|167745589|ref|ZP_02417716.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662] gi|167654901|gb|EDR99030.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662] Length = 187 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 14/188 (7%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 +++ G+ Y I P G IG ++ H+R+D I LFGF + + + F LL Sbjct: 7 VVENNGIGYDIMMPAGQ-EFPGGIGQEVRIYTHMHVREDDISLFGFRTKEELEAFELLIG 65 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V G+G +V + VLS ++ EL +++ +SK I++ PG+ K A +++ EL+ K + Sbjct: 66 VSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKGAKKLILELRDK-LDFEE 124 Query: 138 VVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS- 195 Q + M + + S A+ A LV+LGY + +A A+ KK +N A+ S Sbjct: 125 FEQAEPMDFA----GDLPAEDSVAVTA-QGLVSLGYSRSEAMMAI----KKVENAAEYSP 175 Query: 196 -QIIRLAL 202 Q+++ AL Sbjct: 176 EQLLKKAL 183 >gi|313897511|ref|ZP_07831054.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2] gi|312957881|gb|EFR39506.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2] Length = 212 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 25/190 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 MI IKG I D ++I+ G+ Y +Y P+ ++ L+ H+R+D I Sbjct: 20 MIAFIKGIIHSYSNDSLIIENNGIGYRVYVANPMAV-----RLNAEVILYTYQHVREDAI 74 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF + + F+ L SV+GVG + A+G+L A ++ +I + K + +PGI Sbjct: 75 TLFGFTTMEEHDLFLQLISVKGVGPKTALGMLGVCPARNMIAAIESNDVKTLKGLPGIGA 134 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K AS+I+ +LKGK +V++ KE + ++A+ AL LGY Sbjct: 135 KTASQIVLDLKGK------LVEEVTELEVKENEQL-------LDALEALKALGY-----K 176 Query: 179 TAVVSVLKKE 188 A ++ +KKE Sbjct: 177 NAELNSIKKE 186 >gi|61657364|emb|CAI44281.1| holliday junction DNA helicase [Thermotoga naphthophila RKU-10] Length = 191 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ + GV + I C ++T + K G+ C L ++ QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + S +DM ++ ++ ALV+LGY + QA Sbjct: 123 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALVSLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKHVYREGMKT---SELIKEALKFLS 189 >gi|312870745|ref|ZP_07730852.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 3008A-a] gi|311093757|gb|EFQ52094.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 3008A-a] Length = 194 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 24/208 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P K +C +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 AS+I+ +LKGK L ++ QD + +AI AL LGY + Sbjct: 118 ASQIILDLKGKLDVSDQPQLELILDQDNPALK--------------DAILALSALGYS-N 162 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 + + L+K N + D I+ AL+ Sbjct: 163 KEVEKIKPKLEKLPNQSAD-HYIKEALK 189 >gi|283769122|ref|ZP_06342027.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219] gi|283104308|gb|EFC05686.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219] Length = 192 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 14/172 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I + +DY++I+ QG+ +++Y P +L +G+ +F + ++ +RL Sbjct: 1 MIAFIQGVITEIGDDYIVINHQGLGWLVYYP-HSLEV--HVGEELQVFTHMSVSENDMRL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F+ L SV+G+G + AM +L + + E+I + + ++PGI K Sbjct: 58 YGFSSSKEKTLFLNLISVKGLGPKTAMTMLQKSGYALITEAISKGDVAALKKLPGIGAKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 AS+I+ +L+GK + V + + P A+ AL N GY Sbjct: 118 ASQIVLDLQGKLV-----------AVEVSSTKMMNYPLEIQEALEALKNFGY 158 >gi|159027980|emb|CAO87940.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 209 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 11/183 (6%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +++DV + Y I P R +GK D +F +R+DQ L+GF + +R F L Sbjct: 22 LILDVNQIGYEIQIPSRLALDIGKDNNDSRQIFTHLLLREDQPLLYGFGTAPERDLFRQL 81 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV GVGA++A+ ++ + ELV +I+ N+K++++ PG+ +K A RI ELK K + Sbjct: 82 LSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTPGVGLKTAERIALELKTKLAAW 141 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 + + + +P+ I + L+ LGY Q++ A ++VL ++ + Sbjct: 142 RQLKEATTTTT-------AILPAAEILEDVQMTLLALGYSQEEIDRA-IAVLSQDALFSK 193 Query: 194 DSQ 196 ++Q Sbjct: 194 NTQ 196 >gi|46907761|ref|YP_014150.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes serotype 4b str. F2365] gi|47094257|ref|ZP_00231966.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b H7858] gi|226224134|ref|YP_002758241.1| Holliday junction DNA helicase (ruvA) [Listeria monocytogenes Clip81459] gi|254824408|ref|ZP_05229409.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J1-194] gi|254852157|ref|ZP_05241505.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL R2-503] gi|254931468|ref|ZP_05264827.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HPB2262] gi|254992897|ref|ZP_05275087.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-064] gi|255520701|ref|ZP_05387938.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J1-175] gi|300764800|ref|ZP_07074790.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL N1-017] gi|67461453|sp|Q71ZD7|RUVA_LISMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|259495649|sp|C1KVI0|RUVA_LISMC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46881030|gb|AAT04327.1| holliday junction DNA helicase RuvA [Listeria monocytogenes serotype 4b str. F2365] gi|47017363|gb|EAL08187.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b H7858] gi|225876596|emb|CAS05305.1| Putative Holliday junction DNA helicase (ruvA) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605460|gb|EEW18068.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL R2-503] gi|293583020|gb|EFF95052.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HPB2262] gi|293593643|gb|EFG01404.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J1-194] gi|300514476|gb|EFK41533.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL N1-017] gi|328474893|gb|EGF45693.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 220] gi|332311975|gb|EGJ25070.1| Holliday junction ATP-dependent DNA helicase ruvA [Listeria monocytogenes str. Scott A] Length = 201 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRE-LKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ L KE+++ D+ I+LAL+ ++ Sbjct: 176 VIPKLSKEEDLTSDA-YIKLALQLMT 200 >gi|319953601|ref|YP_004164868.1| holliday junction DNA helicase subunit ruva [Cellulophaga algicola DSM 14237] gi|319422261|gb|ADV49370.1| Holliday junction DNA helicase subunit RuvA [Cellulophaga algicola DSM 14237] Length = 193 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +V+I+ GV Y + + T S + + LF +++D L Sbjct: 1 MIHHLKGKLVEKNPTHVVIECGGVGYFVNISLHTFSKITD-AENIQLFTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+GA +A +LS ++ ++ ++I N I I GI K Sbjct: 60 FGFSEKSEREIFRLLVSVSGIGASIARTMLSSMSPMQIRDAIATANVSAIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ +LK K + + + V + NK++ A+SAL LG+ + Q+ Sbjct: 120 AQRVILDLKDKILKIYDIDEVSSISNNTNKDE------------ALSALEVLGFIRKQSE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 V VL ++ +++ + II+L+L+ Sbjct: 168 KIVDKVLAQDASLSVE-DIIKLSLK 191 >gi|17227871|ref|NP_484419.1| Holliday junction DNA helicase RuvA [Nostoc sp. PCC 7120] gi|20455248|sp|Q8YZT2|RUVA_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|17129720|dbj|BAB72333.1| holliday junction DNA helicase [Nostoc sp. PCC 7120] Length = 213 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 63/115 (54%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 ++V G+ Y + P R L GD +F +R++ L+GF S +R F L SV Sbjct: 24 LEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVREEIPLLYGFSSPAERDLFRHLLSV 83 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 GVGA A+ +L + +LV++II N +++ Q PG+ KIA R+ ELK K I Sbjct: 84 SGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPGVGKKIAERVCLELKAKLI 138 >gi|261821379|ref|YP_003259485.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae WPP163] gi|261605392|gb|ACX87878.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae WPP163] Length = 205 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 17/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS--------ALVNLGY 172 A R++ E+K + LS + +S + + P+ A + + ALV LGY Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIP------LASPASADSRVGEPEVEAAAALVALGY 174 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ + + + + AD +IR ALRA Sbjct: 175 KPQEASRMISKIARPD---ADCETLIRDALRA 203 >gi|288923988|ref|ZP_06418058.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f] gi|288344666|gb|EFC79125.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f] Length = 217 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G +E L ++DV GV +++C TL+ L ++G+ L +R+ ++ L Sbjct: 1 MIASISGTVEALSPTSAVVDVGGVGILVWCTPATLARL-RVGERAKLSTTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F +LQ GVG R+A VL + + ++ ++ + ++PGI K Sbjct: 60 YGFADADERDVFEILQGAAGVGPRLAQAVLGVHSPDAVRRAVAAEDLAALTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ +L+ K S+ V V A ALV LGY +A Sbjct: 120 AQRIVLDLRDKIGPPSAPVPAPRGAVAAAAVAELRPGGPAEQVRDALVGLGYSAREA 176 >gi|254468402|ref|ZP_05081808.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13] gi|207087212|gb|EDZ64495.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13] Length = 189 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MIG I+G + +V +D G+ Y I P+ T L ++ +F+ HM R+D Sbjct: 1 MIGSIRGILIDRSPPWVQVDCGGIGYEIEVPMSTYYHLPELQ--SDIFLHVHMVVREDAQ 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGFL+ ++ F L + G+GA+VA+ +LS ++ + +I Q+ ++ +IPGI Sbjct: 59 LLFGFLTKEEKSSFKSLIKINGIGAKVALSILSGVSMDQFSNAIEQQDVSLLVKIPGIGR 118 Query: 119 KIASRIMTELKGK 131 K A R++ ELK K Sbjct: 119 KTAERLIVELKDK 131 >gi|239637553|ref|ZP_04678525.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603] gi|239596771|gb|EEQ79296.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603] Length = 200 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57 M IKG + L+ +V++DV GV Y I P R L K + F +L V R+D Sbjct: 1 MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTPNSYRFQKYLDKEVQIFTSLIV----REDA 56 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF+++ ++ F+ L V G+G + A+ +L+ T E+ ++I +N + + PGI Sbjct: 57 QLLYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDTYLTKFPGIG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +I+ +LKGK ++ +N A+ S A+ AL LGY + + Sbjct: 117 KKTARQIVLDLKGKVQITEENSDTLLNVMNDSNAN----ESMIKEAMLALEALGYSK-RE 171 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V VL K+ N+ + +++ L+ + Sbjct: 172 LSKVEKVL-KQSNMDSVDEAVKIGLQTL 198 >gi|284032305|ref|YP_003382236.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836] gi|283811598|gb|ADB33437.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836] Length = 199 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 27/215 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D +I+V GV ++C TL+ L + G + +R+D + L Sbjct: 1 MIAFVRGPVAAIGVDSAVIEVGGVGMQVFCHPGTLAGL-RPGQEARVATSMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D ++ F LL + GVG ++A L+ ++ +L +++ ++ ++ ++PGI K Sbjct: 60 YGFADDDEKSLFELLLTASGVGPKLAQAALAVLSPDQLRQAVASEDLAMLVKVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-----SALVNLGYGQD 175 A R++ ELK K + + P A A + LV LG+ Sbjct: 120 AQRVVLELKDK--------------IGAPSKMVAGRPLQATEAWKDQVQAGLVGLGWSAR 165 Query: 176 QATTAVVSV----LKKEKNIADDSQIIRLALRAIS 206 A AVV+V + E ++ D ++R ALR +S Sbjct: 166 DAEDAVVAVSPLAAEGEPSVPD---LLRAALRVLS 197 >gi|260903852|ref|ZP_05912174.1| Holliday junction DNA helicase, RuvA subunit [Brevibacterium linens BL2] Length = 206 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 11/203 (5%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 + G + + D+++I GV + TLS + G L +R+D + LFGF Sbjct: 13 LSGTVHRIAADHLVILTYGVGRRVNVTPDTLSNT-RHGADIELVTTLVVREDSMTLFGFG 71 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++ + F +L S+ G+G R+AM +LS + EL +I Q++ + ++PGI K ASRI Sbjct: 72 TEDENHTFEVLLSISGIGPRLAMAILSVMGPGELAAAISNQDANALTRVPGIGKKGASRI 131 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + EL+ K LS+ E S + ALV LG+ + QA V V Sbjct: 132 ILELENKLPKLSA----------SEPGPQLSFGGANQQVVDALVGLGWKEAQAADVVQEV 181 Query: 185 LKKEKNIADDSQIIRLALRAISC 207 + A S +++ +L+ + Sbjct: 182 VNDLGQNAGTSALLKASLKVLGA 204 >gi|217964320|ref|YP_002349998.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23] gi|290893935|ref|ZP_06556911.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-071] gi|254766966|sp|B8DHL5|RUVA_LISMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|217333590|gb|ACK39384.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23] gi|290556473|gb|EFD90011.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-071] gi|307571114|emb|CAR84293.1| holliday junction DNA helicase [Listeria monocytogenes L99] gi|313608655|gb|EFR84502.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL F2-208] Length = 201 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRE-LKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ L KE+++ D+ I+LAL+ ++ Sbjct: 176 VIPKLAKEEDLTSDA-YIKLALQLMT 200 >gi|226698801|sp|A4G1U8|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193222212|emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans] Length = 192 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 24/210 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + P+ T L +G+ L +R+D L Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGEKVALLTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + G+GAR A+ +LS ++ +L +I LQ + + +IPGI K Sbjct: 61 FGFGTAEERNVFKQLVKITGIGARTALSILSGMSVADLSNAITLQEAGRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ELKGK + V+ D + + ++AL+ LGY + Sbjct: 121 AERLLLELKGKLGADLGAAGGVIHSDATS----------------DILNALLALGYSDKE 164 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A A+ V ++D I+LAL+A+S Sbjct: 165 ALLAMKQV-PAGTGVSDG---IKLALKALS 190 >gi|15609730|ref|NP_217109.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis H37Rv] gi|15842133|ref|NP_337170.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CDC1551] gi|31793777|ref|NP_856270.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis AF2122/97] gi|121638478|ref|YP_978702.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662432|ref|YP_001283955.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis H37Ra] gi|148823788|ref|YP_001288542.1| Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis F11] gi|167967067|ref|ZP_02549344.1| Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis H37Ra] gi|215404543|ref|ZP_03416724.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 02_1987] gi|215412369|ref|ZP_03421129.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 94_M4241A] gi|215431548|ref|ZP_03429467.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis EAS054] gi|215446844|ref|ZP_03433596.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T85] gi|218754331|ref|ZP_03533127.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis GM 1503] gi|219558597|ref|ZP_03537673.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T17] gi|224990972|ref|YP_002645659.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798325|ref|YP_003031326.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 1435] gi|254232711|ref|ZP_04926038.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C] gi|254365262|ref|ZP_04981307.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis str. Haarlem] gi|254551644|ref|ZP_05142091.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187606|ref|ZP_05765080.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CPHL_A] gi|260201721|ref|ZP_05769212.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T46] gi|260205915|ref|ZP_05773406.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis K85] gi|289444132|ref|ZP_06433876.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T46] gi|289448243|ref|ZP_06437987.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CPHL_A] gi|289553618|ref|ZP_06442828.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 605] gi|289570764|ref|ZP_06450991.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T17] gi|289575303|ref|ZP_06455530.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis K85] gi|289746386|ref|ZP_06505764.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis 02_1987] gi|289754712|ref|ZP_06514090.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis EAS054] gi|289758724|ref|ZP_06518102.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis T85] gi|289762766|ref|ZP_06522144.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM 1503] gi|294994298|ref|ZP_06799989.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 210] gi|297635203|ref|ZP_06952983.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN 4207] gi|297732196|ref|ZP_06961314.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN R506] gi|298526068|ref|ZP_07013477.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 94_M4241A] gi|306776867|ref|ZP_07415204.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu001] gi|306780631|ref|ZP_07418968.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu002] gi|306785395|ref|ZP_07423717.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu003] gi|306789995|ref|ZP_07428317.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu004] gi|306794076|ref|ZP_07432378.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu005] gi|306798490|ref|ZP_07436792.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu006] gi|306804353|ref|ZP_07441021.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu008] gi|306807607|ref|ZP_07444275.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu007] gi|306969809|ref|ZP_07482470.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu009] gi|306972982|ref|ZP_07485643.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu010] gi|307080692|ref|ZP_07489862.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu011] gi|307085281|ref|ZP_07494394.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu012] gi|313659531|ref|ZP_07816411.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN V2475] gi|54039572|sp|P66745|RUVA_MYCBO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042201|sp|P66744|RUVA_MYCTU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230567|sp|A1KLU1|RUVA_MYCBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230571|sp|A5U5U3|RUVA_MYCTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767377|sp|C1AF62|RUVA_MYCBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114794219|pdb|2H5X|A Chain A, Ruva From Mycobacterium Tuberculosis gi|114794220|pdb|2H5X|B Chain B, Ruva From Mycobacterium Tuberculosis gi|114794221|pdb|2H5X|C Chain C, Ruva From Mycobacterium Tuberculosis gi|114794222|pdb|2H5X|D Chain D, Ruva From Mycobacterium Tuberculosis gi|1478219|emb|CAB01282.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium tuberculosis H37Rv] gi|13882417|gb|AAK46984.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CDC1551] gi|31619371|emb|CAD94809.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium bovis AF2122/97] gi|121494126|emb|CAL72604.1| Probable holliday junction DNA helicase ruvA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601770|gb|EAY60780.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C] gi|134150775|gb|EBA42820.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis str. Haarlem] gi|148506584|gb|ABQ74393.1| Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis H37Ra] gi|148722315|gb|ABR06940.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis F11] gi|224774085|dbj|BAH26891.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319828|gb|ACT24431.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 1435] gi|289417051|gb|EFD14291.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T46] gi|289421201|gb|EFD18402.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CPHL_A] gi|289438250|gb|EFD20743.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 605] gi|289539734|gb|EFD44312.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis K85] gi|289544518|gb|EFD48166.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T17] gi|289686914|gb|EFD54402.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis 02_1987] gi|289695299|gb|EFD62728.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis EAS054] gi|289710272|gb|EFD74288.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM 1503] gi|289714288|gb|EFD78300.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis T85] gi|298495862|gb|EFI31156.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 94_M4241A] gi|308214722|gb|EFO74121.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu001] gi|308326462|gb|EFP15313.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu002] gi|308329914|gb|EFP18765.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu003] gi|308333529|gb|EFP22380.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu004] gi|308337556|gb|EFP26407.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu005] gi|308341223|gb|EFP30074.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu006] gi|308346003|gb|EFP34854.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu007] gi|308349030|gb|EFP37881.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu008] gi|308352726|gb|EFP41577.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu009] gi|308357598|gb|EFP46449.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu010] gi|308361540|gb|EFP50391.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu011] gi|308365151|gb|EFP54002.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu012] gi|323718789|gb|EGB27946.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis CDC1551A] gi|326904206|gb|EGE51139.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis W-148] gi|328458095|gb|AEB03518.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 4207] Length = 196 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L + + N + ++PGI + Sbjct: 60 YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V H P + ALV LG+ QA A Sbjct: 120 AERMVLELRDK------VGVAATGGALSTNGHAVRSP-----VVEALVGLGFAAKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 +VL + A S +R AL Sbjct: 169 TDTVLAANHD-ATTSSALRSAL 189 >gi|229491976|ref|ZP_04385793.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis SK121] gi|229321108|gb|EEN86912.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis SK121] Length = 199 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G LF +R+D + L Sbjct: 1 MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++++ + + + S + AL LG+ QA A Sbjct: 120 AERMVVELRDKVDAVATTAGA--------ASGVVAGSSIRDQIVEALEGLGFPIKQAEQA 171 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 SVL E A S +R AL Sbjct: 172 TDSVL-AESPEATTSVALRSAL 192 >gi|225021302|ref|ZP_03710494.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii ATCC 33806] gi|224946035|gb|EEG27244.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii ATCC 33806] Length = 198 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G + + + +I+ GV Y + + T S LG + F+ M R++ Sbjct: 1 MIVSLRGTVIDITAHHAVIECAGVGYQV---LATPSTLGHLTRGAETFILITMIVREESQ 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFL R F+ LQ+V G+G ++A+ S T EL +I ++K + +IPG+ Sbjct: 58 TLYGFLDAATRDMFVTLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 ++A R++ +LK K + ++ + V HI + + AL +LG+ + A Sbjct: 118 RMAERMVVDLKDKVATYATPETPTPAAVP----HIDTYE----QVLEALASLGFAEKTAE 169 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + +VL AD + ALRA Sbjct: 170 PVLTTVLA-----ADPTLTTPAALRA 190 >gi|242373942|ref|ZP_04819516.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] gi|242348296|gb|EES39898.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] Length = 200 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 21/212 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57 M +KG + L+ +V+++ G+ Y I P R + L K + + +L V R+D Sbjct: 1 MYAYVKGTLSQLFPTHVVVETAGIGYEIQTPNSYRFQTYLDKEVQIYTSLIV----REDA 56 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF+S+ ++ F+ L V G+G + A+ +L+ T E+ ++I +N + Q PGI Sbjct: 57 QLLYGFISEEEKDMFLSLIKVTGIGPKSALAILAASTPNEVKQAIENENDAYLTQFPGIG 116 Query: 118 MKIASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 K A +I+ +LKGK + +++Q D++ EQ+ I A+ AL LGY Sbjct: 117 KKTARQIVLDLKGKVTINEENSDTLLQVDLNST--EQSQIVK------EAMLALEALGYS 168 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + + V VL K+ +I + ++L L+ + Sbjct: 169 KREL-SKVEKVLNKQ-SITSVDEAVKLGLQTL 198 >gi|227833242|ref|YP_002834949.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262184228|ref|ZP_06043649.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|254766955|sp|C3PGQ7|RUVA_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|227454258|gb|ACP33011.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 202 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 102/202 (50%), Gaps = 7/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +++ GV Y + L L + G+ + +++D + L Sbjct: 1 MIASLRGTVLDIQLDHAVLECAGVGYKVLATPAMLGTLQR-GEEARVMTTLVVKEDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S DR F +LQ+V G+G ++A+ LS ++A +L ++I + + + +IPG+ ++ Sbjct: 60 YGFTSQDDRDMFHVLQTVSGLGPKLALAALSVMSAGDLAQAIAGEEAARLQKIPGVGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + A + + + AL+ LG+ A Sbjct: 120 AQRLILELKDKVKAFAPA-----ESADLSSAAPAAAGPVVEDVVEALIGLGFTDKMARPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V SV+ ++ + A ++R AL Sbjct: 175 VESVVAEQPDAA-TPVVLRAAL 195 >gi|52081253|ref|YP_080044.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC 14580] gi|52786633|ref|YP_092462.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC 14580] gi|319644780|ref|ZP_07999013.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp. BT1B_CT2] gi|81384931|sp|Q65GP5|RUVA_BACLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52004464|gb|AAU24406.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580] gi|52349135|gb|AAU41769.1| RuvA [Bacillus licheniformis ATCC 14580] gi|317392589|gb|EFV73383.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp. BT1B_CT2] Length = 201 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 107/206 (51%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K T++ ++R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPN---PFIYKKNSKETIYTYHYVREDTNAL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F + +V G+G + A+ +L+ ++E+I ++ + + PG+ K Sbjct: 58 YGFSTREEKMLFTKMLNVTGIGPKGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK A ++ + + +EQ H + + A+ AL LGY D+ Sbjct: 118 ARQIILDLKGKLADAVPEIAADLFNHEEREQIHEAA--TALEEALEALRALGYS-DREIK 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V LKKE+ ++ D Q ++ AL+ + Sbjct: 175 KVQPHLKKEEALSTD-QYVKKALQKL 199 >gi|170077885|ref|YP_001734523.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002] gi|229560135|sp|B1XL12|RUVA_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169885554|gb|ACA99267.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002] Length = 209 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 9/152 (5%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFGF 63 I N++G + +++++V+ + Y I P R L IG +FV + R+D L+GF Sbjct: 12 IHRNLQGRF--FLILEVRDIGYEIQVPGRLAQELAAAIGQPQHIFVHSQQREDGTYLYGF 69 Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 S R F L SV G+GA+ A+ +L +T ELV++I+ + + +A+ PGI K A R Sbjct: 70 ASAAARDLFRQLISVSGIGAQGAIALLDTLTLPELVQAIVTADHRQLAKAPGIGKKTAER 129 Query: 124 IMTELKGK------AISLSSVVQQDMSCVNKE 149 + EL+ K SL Q + V+++ Sbjct: 130 LALELRSKLSQWRDQFSLPDTAAQPNAAVHED 161 >gi|255994147|ref|ZP_05427282.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC 49989] gi|255993815|gb|EEU03904.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC 49989] Length = 194 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I E +++D + Y I P+ + +I + ++ E +R+D + L Sbjct: 1 MIKFLRGRIFEKLESCIVLDTGNIGYQINLPLNSPFFTAEISEEVLVYTELIVREDDMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +F LL ++ GVGA+ ++ +LS T EL +I +++ I++ GI K Sbjct: 61 YGFEDFKTLNFFNLLMNINGVGAKASLALLSVSTVDELARAIASKDTAFISRANGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD---MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI EL K S++ + + S V+ +A C AL++LGY +++A Sbjct: 121 AERIALELSDKVESIAYNLPSNNEVTSVVSGNKAEAC----------EALMSLGYNKNEA 170 Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202 ++VLK D IR AL Sbjct: 171 ----MNVLKSLDEGLDTQSYIRKAL 191 >gi|229597664|pdb|2ZTC|A Chain A, Mtruva Form Ii gi|229597665|pdb|2ZTC|B Chain B, Mtruva Form Ii gi|229597666|pdb|2ZTC|C Chain C, Mtruva Form Ii gi|229597667|pdb|2ZTC|D Chain D, Mtruva Form Ii gi|229597668|pdb|2ZTD|A Chain A, Mtruva Form Iii gi|229597669|pdb|2ZTD|B Chain B, Mtruva Form Iii gi|229597670|pdb|2ZTE|A Chain A, Mtruva Form Iv Length = 212 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 17 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 75 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L + + N + ++PGI + Sbjct: 76 YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 135 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + +++ H P + ALV LG+ QA A Sbjct: 136 AERMVLELRDK-VGVAAT-----GGALSTNGHAVRSP-----VVEALVGLGFAAKQAEEA 184 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 +VL + A S +R AL Sbjct: 185 TDTVLAANHD-ATTSSALRSAL 205 >gi|323186363|gb|EFZ71713.1| holliday junction DNA helicase RuvA [Escherichia coli 1357] Length = 187 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 3/188 (1%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 +LI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 1 MLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 60 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 61 KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 120 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + + + + A++ALV LGY +A+ V + + + A Sbjct: 121 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSET 177 Query: 197 IIRLALRA 204 +IR ALRA Sbjct: 178 LIREALRA 185 >gi|295103887|emb|CBL01431.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium prausnitzii SL3/3] Length = 203 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 10/194 (5%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 + V++ GV Y CP L +G TL+ + ++ + L+GF ++ + F + Sbjct: 15 NAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSLYGFATEEQQACFEM 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L +V GVG +V + +LS + + +I + K G+ K+A RI+ ELK K Sbjct: 75 LTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKLAQRIVLELKDKVAK 134 Query: 135 --LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 + + +D++ + S + AI+ALV+LGY Q +A A+ + Sbjct: 135 GFVDGISLEDVAGTAADTPATQS----SAQAIAALVSLGYSQSEAALAIAKI----DATL 186 Query: 193 DDSQIIRLALRAIS 206 +II+LALR+++ Sbjct: 187 PVEEIIKLALRSMA 200 >gi|290769835|gb|ADD61608.1| putative protein [uncultured organism] gi|291542961|emb|CBL16071.1| Holliday junction DNA helicase, RuvA subunit [Ruminococcus bromii L2-63] Length = 200 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 4/172 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + + + +++ GV Y+ + TL + K+ TL+ ++R+D + L Sbjct: 1 MLYSVRGKLIAIESNAAVVECGGVGYMCQTTMNTLKAV-KLNTEVTLYTYLNVREDAVDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F L SV GVG + + VLS ++ ++ +I + K I + GI KI Sbjct: 60 FGFATKAELETFKNLISVSGVGPKAGLAVLSELSPEQVAMAIASDDLKTITRAQGIGKKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A RI+ ELK K L+ ++D S Q + AI AL LGY Sbjct: 120 AQRIVLELKDK---LAKAAKEDSSFAQAAQNSVNVSTGNVPKAIEALGVLGY 168 >gi|160942948|ref|ZP_02090187.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii M21/2] gi|158445849|gb|EDP22852.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii M21/2] Length = 203 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 12/195 (6%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 + V++ GV Y CP L +G TL+ + ++ + L+GF ++ + F + Sbjct: 15 NAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSLYGFATEEQQACFEM 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L +V GVG +V + +LS + + +I + K G+ K+A RI+ ELK K ++ Sbjct: 75 LTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKLAQRIVLELKDK-VA 133 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV---LKKEKNI 191 V + V A + S A AI+ALV+LGY Q +A A+ + L E Sbjct: 134 KGFVDGISLEDVAGSAADTPATQSSA-QAIAALVSLGYSQSEAALAIAKIDAALPVE--- 189 Query: 192 ADDSQIIRLALRAIS 206 +II+LALR+++ Sbjct: 190 ----EIIKLALRSMA 200 >gi|326773260|ref|ZP_08232543.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505] gi|326636490|gb|EGE37393.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505] Length = 217 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L ++G+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---VNKEQAHICSM----PSFAINAISALVNLGYG 173 A R++ ++ K L V D+ V + + +M P + ++ALV LG+ Sbjct: 120 AQRVILDVADK---LGPVTGDDLGAAQTVAQSAQGVEAMSDGGPEPHADVVAALVQLGWN 176 Query: 174 QDQATTAVVSVLKKEKNIA---DDSQIIRLALR 203 + A AV SV + D + ++R +LR Sbjct: 177 EASAQQAVSSVTADAADGGQEPDMAAVLRASLR 209 >gi|258545752|ref|ZP_05705986.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC 15826] gi|258518997|gb|EEV87856.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC 15826] Length = 197 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++++ GV Y + P+ L + + G LFV +R D L Sbjct: 1 MIAYLRGTVLVKQAGQIILETGGVGYELAVPLSVLERVHE-GQEAALFVHHAVRDDGHYL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R WF L V G+G ++A+ +LS L +++ Q+S + ++PG+ K Sbjct: 60 YGFHTLEQRSWFRELIRVSGIGPKIALLILSGFDVEMLAQTVRAQDSAALVKLPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL + L + Q I S ++A ALV LGY +A Sbjct: 120 AERLLVELNDRVGRLP-------TAGGAGQGSILRPASARLDAEEALVALGYKPAEAAQL 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V + AD +IR AL+ Sbjct: 173 IERVGDDD---ADTDTLIRRALQ 192 >gi|326329831|ref|ZP_08196151.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium Broad-1] gi|325952417|gb|EGD44437.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium Broad-1] Length = 200 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 23/203 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++V G+ + C TL+ L + G+ L +R+D + L Sbjct: 1 MIASVRGKVAAVSLSTAVVEVGGIGIELLCTPNTLATL-RTGEEAHLPTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F LLQ+ GVG ++A +L+ ++ + +I +++K + ++PGI K Sbjct: 60 FGFTDTDERTLFELLQTASGVGPKLAQAMLAVLSPDGIRLAISTEDAKTLTKVPGIGQKG 119 Query: 121 ASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ ELK + + S + VQQ + + AL+ LGY Sbjct: 120 AQRVILELKDRIGAPTGSASAPAAVQQGAAPWRDQ-------------VTEALIGLGYNA 166 Query: 175 DQATTAVVSVLKKEKNIADDSQI 197 A AV ++ E D + I Sbjct: 167 RDADKAVTAI---EPEAGDHANI 186 >gi|320011892|gb|ADW06742.1| Holliday junction DNA helicase RuvA [Streptomyces flavogriseus ATCC 33331] Length = 208 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TL+ L +IG L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPGTLAGL-RIGTDARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRTAVATGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + L V + + ++ S+ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDR---LGDPVG---ARIGQQGVGTPVSSSWRDQLQAALIGLGYATREADEA 173 Query: 181 VVSVLKK-EKNIADD-----SQIIRLALRAIS 206 V +V + E IA Q++R AL+ ++ Sbjct: 174 VTAVTPQAEAAIAGGGQAPVPQLLRAALQTLN 205 >gi|115380771|ref|ZP_01467652.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca DW4/3-1] gi|310823011|ref|YP_003955369.1| holliday junction ATP-dependent DNA helicase ruva [Stigmatella aurantiaca DW4/3-1] gi|115362222|gb|EAU61576.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca DW4/3-1] gi|309396083|gb|ADO73542.1| Holliday junction ATP-dependent DNA helicase RuvA [Stigmatella aurantiaca DW4/3-1] Length = 203 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 6/180 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +IDV GV Y + TL L G + V T +R+D L Sbjct: 1 MIAALRGTVAEKDLEEAIIDVAGVGYRVAFSTLTLGKLPAEGQPVHVRVRTVVREDAFEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS + + F+LL SV VG R+A+ VLS + EL ++ + +I G+ K Sbjct: 61 FGFLSKAEEEMFLLLTSVSHVGPRLALMVLSGMEVAELAVALGKGEIARLTKIHGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V + + V K + + + +SAL+NLGY QA A Sbjct: 121 AERLVLELREK------VKELHLEAVAKGASSVSVPAGPKADLVSALLNLGYKAPQAEKA 174 >gi|309805314|ref|ZP_07699365.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 09V1-c] gi|308165390|gb|EFO67622.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 09V1-c] Length = 167 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P K +C +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIINPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGK 131 AS+I+ +LKGK Sbjct: 118 ASQIILDLKGK 128 >gi|327450649|gb|EGE97303.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL087PA3] Length = 194 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 18/197 (9%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +V++D GV + CP T + +I +L +R++ + L+GF+ DR F L+ Sbjct: 9 WVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADDRDAFELV 67 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 Q+ GVG ++A ++S + A +L +I ++ + ++PGI K A++++ ELK K +L Sbjct: 68 QTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILELKDKVAAL 127 Query: 136 SSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQATTAV--VSVLKKEK 189 + A + P + LV LG+ A AV V+ LK+ Sbjct: 128 T-----------PRGASVSGAPHVVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALKEAD 176 Query: 190 NIADDSQIIRLALRAIS 206 ++R ALR+++ Sbjct: 177 PAMTIGNLMRAALRSLA 193 >gi|227544210|ref|ZP_03974259.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri CF48-3A] gi|300908206|ref|ZP_07125672.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri SD2112] gi|133930481|gb|ABO43812.1| RuvA [Lactobacillus reuteri] gi|227185803|gb|EEI65874.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri CF48-3A] gi|300894633|gb|EFK87989.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri SD2112] Length = 199 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 23/199 (11%) Query: 16 YVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y+++DV GV Y ++ P R K ++V +R+D I LFGF +++ FM Sbjct: 16 YIVVDVNGVGYKLLVANPYRYQEDRTKK---VQVYVYQAVREDNISLFGFTDQNEKKLFM 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-- 131 L +V G+G + A+ +L+ LV++I N + + PGI K AS+I+ +L+ K Sbjct: 73 QLINVSGIGPKSALAILANPDHQGLVDAITNNNVNYLTKFPGIGKKTASQIVLDLRDKLT 132 Query: 132 ---AISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 + SL + Q + + VN+E +A+ AL LGY +++ V L K Sbjct: 133 NESSSSLFATTQLTVDATVNRELK----------DALEALAALGY-KERDIKKVQKTLMK 181 Query: 188 EKNIADDSQIIRLALRAIS 206 E+ +A D + +R ALR ++ Sbjct: 182 EEQMATD-EYLRQALRLLN 199 >gi|238762969|ref|ZP_04623936.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia kristensenii ATCC 33638] gi|238698727|gb|EEP91477.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia kristensenii ATCC 33638] Length = 189 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 5/190 (2%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 +L++ GV Y + P+ L +G +F + +R+D L+GF +R F L Sbjct: 1 MLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELI 60 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K + L+ Sbjct: 61 KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 120 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 + + + + + I A SALV LGY +A+ V + K AD Sbjct: 121 GDLFNNTGDIQLPASSSSQISDADIEAEAASALVALGYKPQEASRLVSKIAKPG---ADC 177 Query: 195 SQIIRLALRA 204 +IR ALRA Sbjct: 178 ETLIRDALRA 187 >gi|15806292|ref|NP_294998.1| Holliday junction DNA helicase RuvA [Deinococcus radiodurans R1] gi|20455276|sp|Q9RUV7|RUVA_DEIRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|6459015|gb|AAF10840.1|AE001974_5 Holliday junction binding protein [Deinococcus radiodurans R1] Length = 201 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQI 58 MI + G + + E ++ GV Y + CP L+ L G+ +F T F+ +R+D Sbjct: 1 MIAYLSGVVREVREGSAVVVAGGVGYEVQCPAGMLARLKPGEAAEFSTRFI---VREDAQ 57 Query: 59 RLFGFLSDLDR-QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 LFGF D D + F LL SV GVG ++ + +LS + + L +I + K+++ + G+ Sbjct: 58 LLFGF-PDADHLKLFDLLTSVSGVGPKLGLALLSAMPVSALAAGLIGGDVKLLSSVSGVG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A R+ EL K + + K A + S +A+ AL+ LG+ + Q Sbjct: 117 KKTAERLALELSSK-VPEHLAAAASGAAGGKRPARVSSTAGH--DAVDALLALGFREAQV 173 Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202 AV +L + + D+ +IR AL Sbjct: 174 RAAVAELLGADPEASADT-LIRKAL 197 >gi|309807405|ref|ZP_07701368.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 01V1-a] gi|312872854|ref|ZP_07732916.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2062A-h1] gi|312873710|ref|ZP_07733755.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2052A-d] gi|325913741|ref|ZP_08176102.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B] gi|308169327|gb|EFO71382.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 01V1-a] gi|311090708|gb|EFQ49107.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2052A-d] gi|311091588|gb|EFQ49970.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2062A-h1] gi|325476941|gb|EGC80092.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B] Length = 194 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 22/181 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P K +C +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIINPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 AS+I+ +LKGK L ++ QD + +AI AL LGY Sbjct: 118 ASQIILDLKGKLDVSDQPQLELILDQDNPALK--------------DAILALSALGYSNK 163 Query: 176 Q 176 + Sbjct: 164 E 164 >gi|212696229|ref|ZP_03304357.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM 7454] gi|212676858|gb|EEB36465.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM 7454] Length = 197 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 7/186 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ + E+ +I+ + Y+I T+ L +I + +F + ++R+D I L Sbjct: 1 MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F LL SV +G + A+ VLS + ++ +I+ + + + GI K Sbjct: 60 FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKFAIVNNDIDTLTKAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ + D+S E + S + A AL+NLGY Q + Sbjct: 120 ASRIILELVDKVKKMA--INDDISI--SEDSFTTSNKEIDV-AREALINLGY-QRNSIDK 173 Query: 181 VVSVLK 186 V++ LK Sbjct: 174 VLTTLK 179 >gi|282880373|ref|ZP_06289084.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS 5C-B1] gi|281305729|gb|EFA97778.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS 5C-B1] Length = 204 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVE----THMRQ 55 MI I+G + L +++ G+ Y + + T S + GK L+V T R Sbjct: 1 MIEYIRGELTDLTPAQAVLEAAGIGYSLNISLNTYSAIQGK--KEVKLYVHESLVTGGRD 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D +GF S +R + +L +V GVGA A +LS I+ EL I + +++ + G Sbjct: 59 DNFTFYGFYSKQERDLYRMLITVSGVGANTARMILSAISPAELCNVIANGDERMLKSVKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I +K A RI+ +LK K + SS + ++ ++ Q + S A+SAL LG+ Sbjct: 119 IGLKTAQRIIVDLKDKIV--SSGIATELHVSDQPQNMVHS--GIRDEAVSALTMLGFSPA 174 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V S+LK+ ++ + Q+++LAL I Sbjct: 175 PSAKVVESILKESDSMPVE-QVVKLALSRI 203 >gi|6685946|sp|Q9WY12|RUVA_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 188 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ + GV + I C ++T + K G C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + S +DM ++ ++ ALV+LGY + QA Sbjct: 120 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALVSLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKQVYREGMKT---SELIKEALKFLS 186 >gi|194468325|ref|ZP_03074311.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23] gi|194453178|gb|EDX42076.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23] Length = 199 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 13/194 (6%) Query: 16 YVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y+++DV GV Y ++ P R K ++V +R+D I LFGF ++ FM Sbjct: 16 YIVVDVNGVGYKLLVANPYRYQEDRTKK---VRVYVYQAVREDNISLFGFTDQNEKNLFM 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L +V G+G + A+ +L+ LV++I N + + PGI K AS+I+ +L+ K Sbjct: 73 QLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKTASQIVLDLRDKLT 132 Query: 134 SLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 + SS S Q + ++ S +A+ AL LGY +++ V L KE+ +A Sbjct: 133 NESS-----SSLFATTQLAVDTTVNSELKDALEALAALGY-KERDIKKVQKTLMKEEQMA 186 Query: 193 DDSQIIRLALRAIS 206 D + +R ALR ++ Sbjct: 187 TD-EYLRQALRLLN 199 >gi|15642939|ref|NP_227980.1| Holliday junction DNA helicase RuvA [Thermotoga maritima MSB8] gi|4980659|gb|AAD35258.1|AE001701_11 Holliday junction DNA helicase [Thermotoga maritima MSB8] Length = 191 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ + GV + I C ++T + K G C L + QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + S +DM ++ ++ ALV+LGY + QA Sbjct: 123 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALVSLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKQVYREGMKT---SELIKEALKFLS 189 >gi|284991600|ref|YP_003410154.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM 43160] gi|284064845|gb|ADB75783.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM 43160] Length = 212 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D +++V GV + C T++ L ++G+ L +R+D + L Sbjct: 1 MIASVNGRVAAVSPDGAVVEVGGVGLAVQCTPGTIARL-QVGESARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A VL+ E+ ++ + + K + Q+PGI K Sbjct: 60 YGFADDDERQLFELLQTANGVGPRLAQAVLAIHPPREVRRAVSMADVKALMQVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + S+ Q D + A + + + SALV LG+ +A A Sbjct: 120 AERLILELRDRLGVTSTDTQLDGAAPAGLPA-VTPVAPWRDQLASALVGLGWTGKEADAA 178 Query: 181 V 181 + Sbjct: 179 I 179 >gi|325846722|ref|ZP_08169637.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481480|gb|EGC84521.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 197 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 7/186 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ + E+ +I+ + Y+I T+ L +I + +F + ++R+D I L Sbjct: 1 MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F LL SV +G + A+ VLS + ++ +I+ + + + GI K Sbjct: 60 FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ + D+S E + S + A AL+NLGY Q + Sbjct: 120 ASRIILELVDKVKKMA--INDDISI--SEDSFTTSNKEIDV-AREALINLGY-QRNSIDK 173 Query: 181 VVSVLK 186 V++ LK Sbjct: 174 VLTTLK 179 >gi|330936721|gb|EGH40906.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi str. 1704B] Length = 119 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 68/119 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKK 119 >gi|320534404|ref|ZP_08034887.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171 str. F0337] gi|320133379|gb|EFW25844.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171 str. F0337] Length = 217 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 11/191 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L ++G+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-------VNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ ++ K L V D+ ++ S P + ++ALV LG+ Sbjct: 120 AQRVILDVADK---LGPVTGDDLGAARAASGTAGGQEGAADSGPEPHADVVAALVQLGWN 176 Query: 174 QDQATTAVVSV 184 + A AV SV Sbjct: 177 EASACQAVSSV 187 >gi|332799127|ref|YP_004460626.1| Holliday junction ATP-dependent DNA helicase ruvA [Tepidanaerobacter sp. Re1] gi|332696862|gb|AEE91319.1| Holliday junction ATP-dependent DNA helicase ruvA [Tepidanaerobacter sp. Re1] Length = 193 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 30/214 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQG------VCYIIYCPIRTLSCLGKIGDFCTLFVETHMR 54 M+ ++G + + D+ +ID+ G + Y I+T ++G+ L+ + +R Sbjct: 1 MLDYLEGVLVHVEPDFAIIDIGGWGLKLNISMFTYNKIKT-----ELGNKLKLYTQMVLR 55 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 D + LFGF ++RQ ++LL V G+G + A+ +LS + L SI+ ++ K + ++P Sbjct: 56 DDAVELFGFFDVVERQAYVLLNKVSGIGPKAAISILSLMDVARLKTSILSEDVKDLVKVP 115 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI K A +I+ ELK + +D+ + E M + I A AL++LG+ Sbjct: 116 GIGKKTAQKIIIELKDRI--------KDLPVTSDE-----GMYNSIIEAREALISLGFN- 161 Query: 175 DQATTAVVSVLKKEKNIADDS--QIIRLALRAIS 206 + VL ++ +DS II+ AL+ +S Sbjct: 162 ---PMEIQLVLDEDSVKNNDSVEDIIKCALKKLS 192 >gi|328957015|ref|YP_004374401.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium sp. 17-4] gi|328673339|gb|AEB29385.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium sp. 17-4] Length = 210 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG + + Y++++ G+ Y ++ P R S K+ + T++V +R+D I Sbjct: 7 MYEYIKGIVTFVSPAYIVLETNGIGYQLFIANPFRFSS---KLNEEITIYVHQAVREDAI 63 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF ++Q ++ L SV G+G + + +L+ LV++I +++ + + PG+ Sbjct: 64 TLYGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDNHQGLVQAIENEDAAYLTKFPGVGK 123 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K AS+I+ +LKGK L+ ++ + +E + + + A+ AL LGY + Sbjct: 124 KTASQIVLDLKGKLADLTVAPLENAADYQQELV-LSTNYNHVTEAMEALEALGYSAKEIK 182 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 + K K D +R ALR Sbjct: 183 KIEPQIRKLNKESTD--AYLREALR 205 >gi|289706228|ref|ZP_06502591.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58] gi|289557067|gb|EFD50395.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58] Length = 214 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHM--RQD 56 MI + G +E + D +I V G+ +TL+ L G+ G V+TH+ ++D Sbjct: 1 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLATLHEGRPG-----AVQTHLVVKED 55 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L+GF +R+ F +L + GVG R+A+ +LS + ++ ++ K + ++PGI Sbjct: 56 ALTLYGFADRDEREVFEVLITANGVGPRLALAILSVHHPEAVRRAVTEEDEKTLTRVPGI 115 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K+A +I+ EL G+ V + + V+ E A + ++ + + + A+ LG+ + + Sbjct: 116 GPKMARKIIVELSGRLAPTGEPVPEAEAEVSDEPA-VETV--WHADVVQAMAGLGWSEKE 172 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A AV + + + D+ + + LRA Sbjct: 173 ALKAVEATVAARPEL-DEGRDVAALLRA 199 >gi|259501311|ref|ZP_05744213.1| crossover junction endoribonuclease subunit A [Lactobacillus iners DSM 13335] gi|302190965|ref|ZP_07267219.1| Holliday junction DNA helicase RuvA [Lactobacillus iners AB-1] gi|309803578|ref|ZP_07697670.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 11V1-d] gi|309806006|ref|ZP_07700032.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 03V1-b] gi|309809677|ref|ZP_07703533.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 2503V10-D] gi|315653062|ref|ZP_07905990.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus iners ATCC 55195] gi|325911914|ref|ZP_08174317.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 143-D] gi|329919608|ref|ZP_08276597.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 1401G] gi|259167281|gb|EEW51776.1| crossover junction endoribonuclease subunit A [Lactobacillus iners DSM 13335] gi|308164326|gb|EFO66581.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 11V1-d] gi|308167609|gb|EFO69762.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 03V1-b] gi|308170037|gb|EFO72074.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 2503V10-D] gi|315489597|gb|EFU79231.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus iners ATCC 55195] gi|325476216|gb|EGC79379.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 143-D] gi|328937413|gb|EGG33835.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 1401G] Length = 194 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 22/181 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P K +C +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 AS+I+ +LKGK L ++ QD + +AI AL LGY Sbjct: 118 ASQIILDLKGKLDVSDQPQLELILDQDNPALK--------------DAILALSALGYSNK 163 Query: 176 Q 176 + Sbjct: 164 E 164 >gi|16803573|ref|NP_465058.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes EGD-e] gi|224499806|ref|ZP_03668155.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes Finland 1988] gi|224501527|ref|ZP_03669834.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL R2-561] gi|254828233|ref|ZP_05232920.1| ruvA [Listeria monocytogenes FSL N3-165] gi|254829708|ref|ZP_05234363.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 10403S] gi|284801923|ref|YP_003413788.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578] gi|284995065|ref|YP_003416833.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923] gi|20455246|sp|Q8Y6Z7|RUVA_LISMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|16410962|emb|CAC99611.1| ruvA [Listeria monocytogenes EGD-e] gi|258600621|gb|EEW13946.1| ruvA [Listeria monocytogenes FSL N3-165] gi|284057485|gb|ADB68426.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578] gi|284060532|gb|ADB71471.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923] Length = 201 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRE-LKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ L KE ++ D+ I+LAL+ ++ Sbjct: 176 VIPKLAKEADLTSDA-YIKLALQLMT 200 >gi|312875156|ref|ZP_07735169.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2053A-b] gi|311089263|gb|EFQ47694.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2053A-b] Length = 194 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 22/181 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P K +C +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTPNPYQFIENK--QYC-IFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 AS+I+ +LKGK L ++ QD + +AI AL LGY Sbjct: 118 ASQIILDLKGKLDVSDQPQLELILDQDNPALK--------------DAILALSALGYSNK 163 Query: 176 Q 176 + Sbjct: 164 E 164 >gi|119477229|ref|ZP_01617465.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2143] gi|119449592|gb|EAW30830.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2143] Length = 202 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 16/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+DV GV Y I P+ T+ L ++G L +R+D L Sbjct: 1 MIGRITGVLLEKQAPELLVDVNGVGYEIQAPMTTIYQLPEVGQVVVLHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L V GVG ++A+ +LS I E V + ++ + ++PG+ K Sbjct: 61 YGFAELQERRLFRALIKVNGVGPKLALTILSGIETDEFVRCVRDGDTLSLVRLPGVGKKT 120 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSCVNKEQAHICSM---PSFAINAISALVNLGYGQD 175 A R++ E+K K + S+ ++ + M S A SAL+ LGY Sbjct: 121 AERLLVEMKDRLKDWQIDSIT---------DEFRVSGMGFSNSITAEAESALIALGYKPQ 171 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 +A A+ + ++ Q+IR AL+ Sbjct: 172 EAAKAIAAA--NNDSMTSSEQLIRAALK 197 >gi|332977850|gb|EGK14603.1| crossover junction ATP-dependent DNA helicase RuvA [Desmospora sp. 8437] Length = 204 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 16/209 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + ++++ GV Y+I+C T + G+ T++ +R+D L Sbjct: 1 MIEFIRGTVAYRATEAIVVETGGVGYLIFC---THPLEWEEGEEVTVYTHQVIREDAHTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LL V G+G +VA+ V LV ++ ++ + + ++PG+ K Sbjct: 58 YGFRERQVRDLFRLLLEVSGIGPKVALAVTGSGDPGRLVNAVEQEDLRFLTKLPGVGKKT 117 Query: 121 ASRIMTELKG--KAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ +LK K S D+ ++ E A S AI AL LGY +++A Sbjct: 118 AQRIVLDLKDKLKKAGFSESTFSDVPVGISGEVARAGSA-----EAIEALQALGYNEEEA 172 Query: 178 TTAVVSVLK---KEKNIADDSQIIRLALR 203 T AV K +E+ D Q IR AL+ Sbjct: 173 TRAVAMARKDFGEEEPELD--QWIRRALQ 199 >gi|154148334|ref|YP_001406161.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC BAA-381] gi|166230535|sp|A7I0X0|RUVA_CAMHC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|153804343|gb|ABS51350.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC BAA-381] Length = 184 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 27/192 (14%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 VL V GV Y I +L C +I G+ L +R+D L+GFL + +++ F + Sbjct: 18 VLKTVTGVSYGISI---SLGCSARINKGEKIELLTAQILREDADLLYGFLDEKEKRMFEM 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L + G+GA AM V S +++ + +II ++ + +PGI K A RI+ EL I Sbjct: 75 LIKLNGIGANTAMAVCSSLSSDNFLRAIINGDTATLTTVPGIGPKTARRIIAELSDAKIE 134 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 L++ +Q + I ISAL NLG+ +D+ +++ K N AD Sbjct: 135 LANDGEQ-----------------YKIETISALENLGFKRDKINKILLNC--KSTNTAD- 174 Query: 195 SQIIRLALRAIS 206 +I+ AL+ ++ Sbjct: 175 --LIKEALKKLA 184 >gi|308125357|ref|ZP_05774780.2| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030] gi|308113231|gb|EFO50771.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030] Length = 223 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 20 VIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 79 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 80 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 139 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + L D+ + A S S A+SAL+ LGY Q Sbjct: 140 AERLVVEMKDR---LKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQ 196 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + + Q+IR AL+++ Sbjct: 197 ASKVVSQIAKPDMS---SEQLIREALKSM 222 >gi|116872962|ref|YP_849743.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463790|sp|A0AIY2|RUVA_LISW6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116741840|emb|CAK20964.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b str. SLCC5334] Length = 201 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGKVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGSEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVFKAPENDIVHGLSPQLEEAVLALEALGYSTKE-LKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ L KE ++ D+ I+LALR ++ Sbjct: 176 VIPKLSKENDLTSDA-YIKLALRLMT 200 >gi|296129641|ref|YP_003636891.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM 20109] gi|296021456|gb|ADG74692.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM 20109] Length = 202 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 22/214 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQI 58 MI + G + + D +++V GV ++ TL+ L G+ G T V +R+D + Sbjct: 1 MIASVHGTVLAVRLDSAVLEVGGVGLLVQATPATLAGLRVGQPGRLSTSLV---VREDAL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF D +R F +Q+V GVG R+A+ +L+ T L ++ ++ + ++PGI Sbjct: 58 TLFGFADDDERDVFETVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDIAALMRVPGIGR 117 Query: 119 KIASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A RI+ EL + A + S ++EQ + ALV LG+ Sbjct: 118 KGAQRIVLELGERLGAPDPTGGTPAAPSADHREQ------------VVEALVGLGWPLRA 165 Query: 177 ATTAVVSVLKKEK---NIADDSQIIRLALRAISC 207 A AV SVL + ++R ALR + Sbjct: 166 AQDAVASVLDGSAVPVGAGEVPGVLRAALRTLGS 199 >gi|15613787|ref|NP_242090.1| Holliday junction DNA helicase RuvA [Bacillus halodurans C-125] gi|20140284|sp|Q9KDI9|RUVA_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|10173840|dbj|BAB04943.1| holliday junction DNA helicase [Bacillus halodurans C-125] Length = 203 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 8/175 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + Y +++V GV Y +YCP + T++ ++R+D IRL Sbjct: 1 MIDYLRGTLTDIDHQYAVVEVHGVGYQVYCP-NPYEFEKERDSVITIYTFQYVREDVIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R F L +V G+G + A+ +L+ ++++I ++ + + PG+ K Sbjct: 60 YGFRTKEKRSLFEKLLNVSGIGPKGALAILATGQPEHVIQAIEEEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ--AHICSMPSFAIN-AISALVNLGY 172 A +I+ +LKGK L + +EQ H + + A++ A+ AL LGY Sbjct: 120 ARQIILDLKGKVDELHP----GLFSQKEEQPKPHEKNDGNQALDEAMEALKALGY 170 >gi|313764321|gb|EFS35685.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL013PA1] gi|313772296|gb|EFS38262.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL074PA1] gi|313792007|gb|EFS40108.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL110PA1] gi|313802043|gb|EFS43277.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL110PA2] gi|313807654|gb|EFS46141.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL087PA2] gi|313810161|gb|EFS47882.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL083PA1] gi|313812811|gb|EFS50525.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL025PA1] gi|313815859|gb|EFS53573.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL059PA1] gi|313818691|gb|EFS56405.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL046PA2] gi|313820461|gb|EFS58175.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL036PA1] gi|313822733|gb|EFS60447.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL036PA2] gi|313825333|gb|EFS63047.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL063PA1] gi|313827628|gb|EFS65342.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL063PA2] gi|313830492|gb|EFS68206.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL007PA1] gi|313833528|gb|EFS71242.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL056PA1] gi|313838864|gb|EFS76578.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL086PA1] gi|314915311|gb|EFS79142.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA4] gi|314918138|gb|EFS81969.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL050PA1] gi|314920215|gb|EFS84046.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL050PA3] gi|314925070|gb|EFS88901.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL036PA3] gi|314931738|gb|EFS95569.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL067PA1] gi|314958035|gb|EFT02138.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL002PA1] gi|314960393|gb|EFT04495.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL002PA2] gi|314962663|gb|EFT06763.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL082PA1] gi|314967471|gb|EFT11570.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL037PA1] gi|314973492|gb|EFT17588.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL053PA1] gi|314976172|gb|EFT20267.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL045PA1] gi|314978569|gb|EFT22663.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL072PA2] gi|314983806|gb|EFT27898.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA1] gi|314987987|gb|EFT32078.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA2] gi|314989797|gb|EFT33888.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA3] gi|315077879|gb|EFT49930.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL053PA2] gi|315080504|gb|EFT52480.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL078PA1] gi|315084175|gb|EFT56151.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL027PA2] gi|315085518|gb|EFT57494.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL002PA3] gi|315088425|gb|EFT60401.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL072PA1] gi|315096039|gb|EFT68015.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL038PA1] gi|315098667|gb|EFT70643.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL059PA2] gi|315101330|gb|EFT73306.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL046PA1] gi|327326319|gb|EGE68109.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL096PA2] gi|327330390|gb|EGE72139.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL097PA1] gi|327331806|gb|EGE73543.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL096PA3] gi|327443583|gb|EGE90237.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL013PA2] gi|327445787|gb|EGE92441.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL043PA2] gi|327448230|gb|EGE94884.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL043PA1] gi|327453274|gb|EGE99928.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL092PA1] gi|327454013|gb|EGF00668.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL083PA2] gi|328753271|gb|EGF66887.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL025PA2] gi|328753338|gb|EGF66954.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL020PA1] gi|328754067|gb|EGF67683.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL087PA1] gi|328760719|gb|EGF74285.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL099PA1] Length = 194 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 10/193 (5%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +V++D GV + CP T + +I +L +R++ + L+GF+ DR F L+ Sbjct: 9 WVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADDRDAFELV 67 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 Q+ GVG ++A ++S + A +L +I ++ + ++PGI K A++++ ELK K +L Sbjct: 68 QTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILELKDKVAAL 127 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV--VSVLKKEKNIAD 193 + H+ + + LV LG+ A AV V+ LK+ Sbjct: 128 TP-----RGASVSGATHVVA--PWREQVAEGLVGLGWSAKDAEKAVDKVAALKEADPAMT 180 Query: 194 DSQIIRLALRAIS 206 ++R ALR+++ Sbjct: 181 IGNLMRAALRSLA 193 >gi|89099000|ref|ZP_01171880.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL B-14911] gi|89086404|gb|EAR65525.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL B-14911] Length = 203 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 8/197 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E + +Y++++ G+ Y I P S K G +F ++R+D L Sbjct: 1 MFEYIKGTVEFIGPEYIVVENNGLGYQISTP-NPFSYSNKQGGEIQIFTYHYVREDIFAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F L +V G+G + A+ +L+ ++V++I ++ + + PG+ K Sbjct: 60 YGFHSREEKMLFTKLLNVSGIGPKGALAILASGEPAQVVQAIEDEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQA 177 A +++ +LKGK L + + N + A + S A+ AI AL LGY + + Sbjct: 120 ARQMILDLKGK---LQEAIPDFFPNLFNPDAARPAATGSAALLEEAILALRALGYSEKEV 176 Query: 178 TTAVVSVLKKEKNIADD 194 + L+KEK D+ Sbjct: 177 KR-IKPALEKEKLTTDE 192 >gi|238792583|ref|ZP_04636216.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia intermedia ATCC 29909] gi|238728218|gb|EEQ19739.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia intermedia ATCC 29909] Length = 188 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 4/189 (2%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 +L++ GV Y + P+ L +G +F + +R+D L+GF +R F L Sbjct: 1 MLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELI 60 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K + L+ Sbjct: 61 KVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLN 120 Query: 137 SVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + + + + S A SALV LGY +A+ V + K AD Sbjct: 121 GDLFNNTGDIQLPASSSQTSDADIEAEAASALVALGYKPQEASRLVSKIAKPG---ADCE 177 Query: 196 QIIRLALRA 204 +IR ALR+ Sbjct: 178 TLIRDALRS 186 >gi|302389938|ref|YP_003825759.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani DSM 16646] gi|302200566|gb|ADL08136.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani DSM 16646] Length = 192 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 19/208 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 M+ I+G + + ++ ++DV G+ + + + T + + + + LF H++++ Sbjct: 1 MLDYIRGRLRDIGPNFAILDVAGLGFRCFISLNTYNKIKLLKNSKVLLFTCLHVKEEGAE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF +R+ F+LL V GVG RVA+ +LS + L I+ ++ K + +PGI K Sbjct: 61 LFGFSELHEREAFILLNKVSGVGPRVALSILSWLEPKRLKSVIMSEDVKTLTSVPGIGNK 120 Query: 120 IASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ ELK K +L V Q EQA +C A AL+ LG+ + Sbjct: 121 TAQKIIFELKDKIKNLPVETVSQT------EQAALCE-------ARDALLALGF----SI 163 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 V VL + +II ALR I+ Sbjct: 164 GEVQRVLNEIGTATTVEEIISNALRLIA 191 >gi|61657514|emb|CAI44425.1| holliday junction DNA helicase [Thermotoga sp. RQ2] Length = 191 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ + GV + I C ++T + + G+ C L + QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + S +DM ++ ++ AL++LGY + QA Sbjct: 123 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALISLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKHVYREGMKT---SELIKEALKFLS 189 >gi|257456050|ref|ZP_05621253.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC 35580] gi|257446508|gb|EEV21548.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC 35580] Length = 202 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 11/181 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + G + V I+ G+ + I+ + G G ++ + R+DQ+RL Sbjct: 1 MFNSISGTLTGKTAESVYIETHGIEWEIFVSTLSADRFGAAGSTVRVYTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R F+ L V+G+G + A+ +LS + + L ++ + + IPGI K Sbjct: 61 FGFLTPAERSLFLDLTKVEGIGPKQALKILSGLDSAALEAALEAGDVARLQSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG+ L QD +A F + I AL+++GY + +A Sbjct: 121 AQKMVLALKGQLTGL-----QDSG-----RAETAKKSEFE-DIIIALIDMGYDRKRAAET 169 Query: 181 V 181 V Sbjct: 170 V 170 >gi|300868186|ref|ZP_07112818.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp. PCC 6506] gi|300333810|emb|CBN58002.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp. PCC 6506] Length = 207 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 89/164 (54%), Gaps = 10/164 (6%) Query: 1 MIGKIKGNI----EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI +KG + +G ++++V + Y + R L +G+ +F +++D Sbjct: 1 MINYLKGTVADIQKGNNRVMLILEVNQIGYEVQILPRMTGQLPAMGEVVQVFTHQQVKED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q+ L+GF+S +R F L SV G+GA++A+ +L + +LV++I+ N++++A+ PG+ Sbjct: 61 QMVLYGFISGAERNLFRQLVSVSGIGAQLAIALLETLGLQDLVQAIVGGNTRILAKTPGV 120 Query: 117 SMKIASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHIC 154 K A R++ EL+ K LS+ V +S V +E+ + Sbjct: 121 GNKTAERLVLELRTKLSEWRNQEGLSTSVPAGVSSVIQEEVEMT 164 >gi|170288580|ref|YP_001738818.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2] gi|170176083|gb|ACB09135.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2] Length = 188 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ + GV + I C ++T + + G+ C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + S +DM ++ ++ AL++LGY + QA Sbjct: 120 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALISLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMKT---SELIKEALKFLS 186 >gi|314955639|gb|EFT00041.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL027PA1] Length = 194 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 10/193 (5%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +V++D GV + CP T + +I +L +R++ + L+GF+ DR F L+ Sbjct: 9 WVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADDRDVFELV 67 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 Q+ GVG ++A ++S + A +L +I ++ + ++PGI K A++++ ELK K +L Sbjct: 68 QTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILELKDKVAAL 127 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV--VSVLKKEKNIAD 193 + H+ + + LV LG+ A AV V+ LK+ Sbjct: 128 TP-----RGASVSGATHVVA--PWREQVAEGLVGLGWSAKDAEKAVDKVAALKEADPAMT 180 Query: 194 DSQIIRLALRAIS 206 ++R ALR+++ Sbjct: 181 IGNLMRAALRSLA 193 >gi|312196177|ref|YP_004016238.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c] gi|311227513|gb|ADP80368.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c] Length = 205 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +++V GV ++ C TL+ L +G+ L +R+ ++ L Sbjct: 1 MIASVAGTVLSVSPTAAVVEVGGVGLLVQCTPATLAGL-AVGEPARLATALVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R + LQ GVG ++A VL + E+ ++ ++ + ++PG+ K Sbjct: 60 YGFADADERDVYETLQGAAGVGPKLAQAVLGVLAPDEVRRAVADEDLAALTRVPGVGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA---HICSMPSFAINAIS-ALVNLGYGQDQ 176 A RI+ +LK K + + QA + P A ++ AL LGY + Sbjct: 120 AQRIVLDLKDK-------LGPPVGGAPARQAAGGRVLPAPRTAPEQVTDALGGLGYSTRE 172 Query: 177 ATTAVVSVLKKEKNIADD-SQIIRLAL 202 A AV +VL + DD S ++R AL Sbjct: 173 AEDAVAAVLAGDGTDTDDVSAMLRAAL 199 >gi|146328995|ref|YP_001210061.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus VCS1703A] gi|166230547|sp|A5EXH7|RUVA_DICNV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146232465|gb|ABQ13443.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus VCS1703A] Length = 204 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 11/196 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + D +LI+V GV Y + P ++ ++G+ T+FV R+D L Sbjct: 1 MIGWLQGRVLYKQNDQLLINVCGVGYELTVPQSVMAS-AQVGEELTVFVHHVQREDGQFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S L RQ F L V G+G ++++ +LS +T L+ ++ Q S ++ GI K Sbjct: 60 YGFSSFLQRQLFRELIRVSGIGPKLSIVILSGLTPEALIAAVRAQESAPFLRLSGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMS-CVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL + V + D+ C E + S + AI AL+ L +A Sbjct: 120 AERLLIELHDR------VEKNDLFLCDESESSRAPIALSASEEAIQALIALELAPAEAE- 172 Query: 180 AVVSVLKKEKNIADDS 195 + V K +K +A+D+ Sbjct: 173 --LWVKKAQKTLAEDA 186 >gi|148543762|ref|YP_001271132.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri DSM 20016] gi|184153168|ref|YP_001841509.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM 1112] gi|227363258|ref|ZP_03847390.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri MM2-3] gi|325682134|ref|ZP_08161652.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri MM4-1A] gi|167012661|sp|A5VIX1|RUVA_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560094|sp|B2G6E7|RUVA_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148530796|gb|ABQ82795.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus reuteri DSM 20016] gi|183224512|dbj|BAG25029.1| holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM 1112] gi|227071714|gb|EEI10005.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri MM2-3] gi|324978778|gb|EGC15727.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri MM4-1A] Length = 199 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 23/199 (11%) Query: 16 YVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y+++DV GV Y ++ P R K ++V +R+D I LFGF ++ FM Sbjct: 16 YIVVDVNGVGYKLLVANPYRYQEDRTKK---VQVYVYQAVREDNISLFGFTDQNEKNLFM 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-- 131 L +V G+G + A+ +L+ LV++I N + + PGI K AS+I+ +L+ K Sbjct: 73 QLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKTASQIVLDLRDKLT 132 Query: 132 ---AISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 + SL + Q + + VN+E +A+ AL LGY +++ V L K Sbjct: 133 NESSSSLFATTQLTVDATVNRELK----------DALEALAALGY-KERDIKKVQKALMK 181 Query: 188 EKNIADDSQIIRLALRAIS 206 E+ +A D + +R ALR ++ Sbjct: 182 EEQMATD-EYLRQALRLLN 199 >gi|197284986|ref|YP_002150858.1| Holliday junction DNA helicase RuvA [Proteus mirabilis HI4320] gi|227355390|ref|ZP_03839791.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] gi|229560118|sp|B4ETP7|RUVA_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194682473|emb|CAR42407.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis HI4320] gi|227164614|gb|EEI49485.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] Length = 207 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG+I+G I VLI+ GV Y I P+ L IG ++ + +R+D Sbjct: 1 MIGRIRGVILEKQPPVVLIEAGNGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F L V GVG ++A+ +LS ++A + V +I ++ + ++PG+ K Sbjct: 61 LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120 Query: 120 IASRIMTELKGKAISLSS-VVQQ--DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + L+ + +Q D+ + S A +AL+ LGY + Sbjct: 121 TAERLVVEMKDRFKGLNGDLFEQNGDIELPASASSKAPSAADIEAEASAALIALGYKPQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A + V AD +I+ ALRA Sbjct: 181 AAKMISRVATAG---ADSETLIKEALRA 205 >gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198] gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198] Length = 184 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 23/204 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI +KG + L +L+DV V Y I+ + L GK + +++ +R+D Sbjct: 1 MIFALKGKVFALEPAKLLLDVHDVIYEIHISFGSAEELQGK--EEALVYISQIIREDAHL 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF++ +++Q F L + GVG +VA+ +LS +A E + I ++ + ++PG+ K Sbjct: 59 LFGFVTPMEKQIFDTLIKINGVGPKVALAILSTFSAQEFMAVIERKDIAALQKVPGVGTK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +IM EL G + L + ++D + + +QA + AL NLGY + Sbjct: 119 SAGKIMVELSGAYVEL--LPKKDHTE-HFQQAEM------------ALENLGYKRAAIQK 163 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 A+ S+ K N+ D II+ AL+ Sbjct: 164 ALKSI--KASNVQD---IIKEALK 182 >gi|327475176|gb|AEA77183.1| holliday junction DNA helicase [Exiguobacterium sp. EPVM] Length = 195 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 9/178 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG++ + +Y+ +DV GV Y ++ P + + +F ++R+DQ L Sbjct: 1 MIEFVKGSVAYVCAEYITLDVSGVGYKVHVP--NPFFYREQDEHVIVFTHHYVREDQQTL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L V G+G + A+ +++ L+++I +N K + + PG+ K Sbjct: 59 YGFRSRRERELFNKLLGVNGIGPKGALAIVASGDMDALIDAIETENEKYLTKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A ++ +LKGK L+ + + + + A ALV LGY + + T Sbjct: 119 AKQMALDLKGKLSELAPDYVPNTGLFAQGASELDE-------ACEALVALGYSEREIT 169 >gi|78779241|ref|YP_397353.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus marinus str. MIT 9312] gi|123727890|sp|Q31B28|RUVA_PROM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78712740|gb|ABB49917.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus marinus str. MIT 9312] Length = 225 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 114/214 (53%), Gaps = 32/214 (14%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVE 50 MI I G + L++ ++LI+ QG+ Y I + ++T K TL+++ Sbjct: 1 MISWISGELVELWQTNQKFFLLINCQGLGYEIQVLESLFLKLKTNQITNK---NITLWIK 57 Query: 51 THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110 ++D LFGF S + +F+ + +++GVG+++ MG+LS+ + +E++ +I QN K+I Sbjct: 58 HIKKEDSDLLFGFSSKDQKNFFIEILNIRGVGSQIGMGILSKFSISEVINAINTQNKKLI 117 Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA---- 166 +PGI K++ R++ ELK K + +Q++ S K++ HI IN I + Sbjct: 118 CSVPGIGQKMSERLILELKSKFRN-ELKIQEEKS---KDEFHI---KDNKINKIVSDIEL 170 Query: 167 -LVNLGYGQDQ-------ATTAVVSVLKKEKNIA 192 L +L Y +++ + + S+ KKEK+ + Sbjct: 171 TLKSLNYTKNEIKSILPIISKEIDSLTKKEKDTS 204 >gi|330896128|gb|EGH28349.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 128 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 68/119 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ + Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGQE 119 >gi|86605208|ref|YP_473971.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab] gi|123765632|sp|Q2JWZ2|RUVA_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|86553750|gb|ABC98708.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab] Length = 204 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 65/113 (57%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 ++VQG+ Y + P R L L IG+ +F +R+ ++ L+GF S +R F+ L V Sbjct: 22 VEVQGIGYRVKAPARFLKQLPPIGEPVRVFTHLVVRETELVLYGFGSPAERDVFVELIKV 81 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 GVG + + +L+ ELV++++ +N ++++ PG+ K A R+ ELK K Sbjct: 82 SGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVGHKTAQRLALELKTK 134 >gi|319651695|ref|ZP_08005822.1| Holliday junction DNA helicase motor protein [Bacillus sp. 2_A_57_CT2] gi|317396762|gb|EFV77473.1| Holliday junction DNA helicase motor protein [Bacillus sp. 2_A_57_CT2] Length = 203 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 5/190 (2%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 ++G ++ + +YV+I+ G+ Y I P S + G ++ ++R+D + L+GF Sbjct: 5 VRGKLDFIGPEYVVIENNGIGYQILTP-NPFSYTPEFGQEVRIYTYHYVREDIMALYGFQ 63 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + ++ F L +V G+G + A+ +L+ ++V++I ++ + + PG+ K A ++ Sbjct: 64 TREEKTLFTKLLNVTGIGPKGALAILASGEPEQVVQAIENEDEAFLVKFPGVGKKTARQM 123 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATTAVVS 183 + +LKGK + ++ +K QA S PS + A+ AL LGY D+ + Sbjct: 124 ILDLKGKLPDIVPDFFPNLFSADKLQAE--SGPSGDLEEALLALKALGY-SDKELKKITP 180 Query: 184 VLKKEKNIAD 193 L+KEK D Sbjct: 181 ELRKEKLTTD 190 >gi|158336024|ref|YP_001517198.1| Holliday junction DNA helicase RuvA [Acaryochloris marina MBIC11017] gi|189045739|sp|B0CAE7|RUVA_ACAM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158306265|gb|ABW27882.1| holliday junction DNA helicase RuvA [Acaryochloris marina MBIC11017] Length = 208 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 23/195 (11%) Query: 1 MIGKIKGNIEGL-----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG ++G + L + + +DV V Y +Y P R L + +F +R+ Sbjct: 1 MIGFLQGYVVSLQQTSTHRTLLTLDVNQVGYDLYVPSRIRQHLPPDQEQMRVFTHLQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 DQ+ LFGF +R F L +V G+G ++A+ ++ + +LV++I+ N+K++ + PG Sbjct: 61 DQMVLFGFAVVAERDLFRQLIAVSGIGPQLALALIDTLGLQDLVQAIVNSNTKMLVKTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AINAIS-----ALVN 169 + K A RI EL+ K ++QA + ++PS I+++ L+ Sbjct: 121 VGAKTAERIALELRSKLAEW------------RDQAGLKTLPSAGPIDSVQEDVEMTLLA 168 Query: 170 LGYGQDQATTAVVSV 184 LGY + A+ +V Sbjct: 169 LGYTSQEVMRALQAV 183 >gi|149370922|ref|ZP_01890517.1| Holliday junction DNA helicase [unidentified eubacterium SCB49] gi|149355708|gb|EDM44266.1| Holliday junction DNA helicase [unidentified eubacterium SCB49] Length = 193 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + V+++ GV Y I + T S L + L+ +R+D L Sbjct: 1 MVHHVQGKMIEKNPTDVVVECNGVGYFINISLHTFSQLPSTENVL-LYTHLQVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R+ F LL SV GVGA +A +LS + +++++I+ ++ VI + GI K Sbjct: 60 YGFSTKVEREIFRLLISVSGVGASIARTMLSSLNPKQVMDAIVSEDVSVIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ +LK K I + S + S NK + A+SAL LG+ + A Sbjct: 120 AQRVILDLKDKIIKVFGMSAISAVSSNTNKNE------------ALSALETLGFARKVAE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 ++++ A +II+ AL+ Sbjct: 168 KVCDKIVQQHPE-ATVEEIIKHALK 191 >gi|108762337|ref|YP_633128.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622] gi|123374257|sp|Q1D2J5|RUVA_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|108466217|gb|ABF91402.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622] Length = 202 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNI-EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI +++G + E ED IDV GV Y + L L G + V T +R+D Sbjct: 1 MISRLRGTVLEKDLEDAT-IDVGGVGYRVNFSSLALGKLPAEGQPVDVRVRTVVREDAFD 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL+ + + F+LL SV VG R+++ VLS + ELV ++ +A+I G+ K Sbjct: 60 LFGFLTKGEEEVFLLLNSVSRVGPRLSLMVLSGMEVPELVAALSRGEVARLAKIHGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K ++ + V++ A + A + +SAL+NLGY Q QA Sbjct: 120 TAERLVLELKDKVKTIH------LEAVSRGTAPAAVSGAHA-DLVSALLNLGYKQPQAEK 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A ++ A + R AL+A+ Sbjct: 173 AADLASERLGAEATFQALFREALKAL 198 >gi|311069260|ref|YP_003974183.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942] gi|310869777|gb|ADP33252.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942] Length = 201 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 106/207 (51%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K + T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPN---PFIYKERNQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++E+I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILASGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A +I+ +LKGK L+ VV + + + + I + A+ AL LGY + + Sbjct: 118 ARQIILDLKGK---LADVVPEMIENLFNHEDRIEKHKAETALDEALEALRVLGYAEKE-I 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V+ LK++ + D Q ++ AL+ + Sbjct: 174 KKVLPHLKEDTTLTTD-QYVKKALQKL 199 >gi|257466083|ref|ZP_05630394.1| Holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans ATCC 25563] gi|315917239|ref|ZP_07913479.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans ATCC 25563] gi|313691114|gb|EFS27949.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans ATCC 25563] Length = 193 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 101/193 (52%), Gaps = 21/193 (10%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +Y ++V G+ Y +Y +R + ++G +++ H+R+++ +L GFL + +R+ F L Sbjct: 15 EYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKLIGFLEEKERKLFEL 73 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISMKIASRIMTELKGKA 132 L SV+G+G +A+ LS +LV I Q KV + +IP + K A +I+ +++ K Sbjct: 74 LLSVKGIGVSLALAALSTYPVEQLVAYI--QEEKVGQLKKIPKLGEKKAQQIILDIQSKL 131 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 V+Q + SM ++A + SAL NLGY A V +L+ E I Sbjct: 132 KHFG--VEQRL-------VEDSSM-AWAEDIASALENLGY----AKKEVEHLLQHENWI- 176 Query: 193 DDSQIIRLALRAI 205 + Q + A++AI Sbjct: 177 -EYQSLEEAMKAI 188 >gi|88608038|ref|YP_506455.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str. Miyayama] gi|123763710|sp|Q2GDJ1|RUVA_NEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|88600207|gb|ABD45675.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str. Miyayama] Length = 193 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + L ++ +++DV GV Y ++ R + L + G +L++E + ++ +L Sbjct: 1 MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFLENINKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +L V+G+ ++A+ +L+ + EL+ +I ++ + +I GI K+ Sbjct: 60 YGFECRKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RI+TE + L S + S N HI S A+SALV LG+ + Sbjct: 119 VKRIITETYEDFLKLDSHLSGIASSTN---VHIAS------EAVSALVKLGFQHKPSHKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ ++ K I + +++I LAL+ + Sbjct: 170 VMEIMTKRPAI-EIAELITLALKML 193 >gi|315108548|gb|EFT80524.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL030PA2] Length = 194 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 10/193 (5%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +V++D GV + CP T + +I +L +R++ + L+GF+ DR F L+ Sbjct: 9 WVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADDRDAFELV 67 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 Q+ GVG ++A ++S + A +L +I ++ + +PGI K A++++ ELK K +L Sbjct: 68 QTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCSVPGIGRKGAAKMILELKDKVAAL 127 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV--VSVLKKEKNIAD 193 + H+ + + LV LG+ A AV V+ LK+ Sbjct: 128 TP-----RGASVSGATHVVA--PWREQVAEGLVGLGWSAKDAEKAVDKVAALKEADPAMT 180 Query: 194 DSQIIRLALRAIS 206 ++R ALR+++ Sbjct: 181 IGNLMRAALRSLA 193 >gi|119489537|ref|ZP_01622298.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106] gi|119454616|gb|EAW35763.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106] Length = 211 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 81/136 (59%), Gaps = 5/136 (3%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG +KG + + ++ +L++ + Y + R ++ L +G+ +F +R+ Sbjct: 1 MIGYLKGTVVAIQKNNSNRVILLLETNNIGYEVQIVPRMIAQLPTMGESIQVFTHLQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 DQ+ L+GF S +R F L SV G+G ++A+ +L+ + TELV++I+ +N+KV+A+ PG Sbjct: 61 DQMVLYGFSSFAERDLFRQLVSVSGIGTQLAIALLNTLELTELVQAIVGENTKVLAKTPG 120 Query: 116 ISMKIASRIMTELKGK 131 + K A RI ELK K Sbjct: 121 VGTKTAQRIALELKTK 136 >gi|270262223|ref|ZP_06190495.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia odorifera 4Rx13] gi|270044099|gb|EFA17191.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia odorifera 4Rx13] Length = 204 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L +G +F + +R+D L Sbjct: 1 MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPDLGQEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + S + A + A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPASATQAAELDAEAEAASALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 MVSKIAKPG---ADCETLIRDALRA 202 >gi|261878755|ref|ZP_06005182.1| crossover junction endoribonuclease subunit A [Prevotella bergensis DSM 17361] gi|270334761|gb|EFA45547.1| crossover junction endoribonuclease subunit A [Prevotella bergensis DSM 17361] Length = 206 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GK--IGDFCTLFVETHMRQDQ 57 MI I+G + L +++ G+ Y + + T + GK + + ++T R D Sbjct: 1 MIEYIQGELTELTPALAVVETGGIGYALSISLNTYDDIQGKKAVKLYVHEAIQTGGRDDN 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF S +R+ + +L +V GVGA A +LS +T EL +I N K+I + GI Sbjct: 61 YTLYGFASKQERELYRMLITVSGVGANTARTMLSSLTPKELCNAIANGNEKLIKSVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A R++ +L+ K + SS + + + + + A+SAL LG+ A Sbjct: 121 LKTAQRVIVDLRDKIV--SSGIAEVLHAGTPDTKVSAVNTAVKDEAVSALTMLGFSPAPA 178 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 T V ++L ++ ++ + +++ AL+ I Sbjct: 179 TKTVTAILTEQPDMVVE-MVVKEALKRI 205 >gi|281601276|gb|ADA74260.1| Holliday junction ATP-dependent DNA helicase ruvA [Shigella flexneri 2002017] gi|332766837|gb|EGJ97038.1| holliday junction DNA helicase RuvA [Shigella flexneri 2930-71] Length = 187 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 3/188 (1%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 +LI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 1 MLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 60 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 61 KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 120 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + + + + A++ALV LGY +A+ V + + + + Sbjct: 121 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPDTS---SET 177 Query: 197 IIRLALRA 204 +IR ALRA Sbjct: 178 LIREALRA 185 >gi|227549154|ref|ZP_03979203.1| Holliday junction DNA helicase motor protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078774|gb|EEI16737.1| Holliday junction DNA helicase motor protein [Corynebacterium lipophiloflavum DSM 44291] Length = 206 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+ GV Y + TL+ L + G+ + ++ D + L Sbjct: 1 MIDSLHGEVLSIGLDHAVIECAGVGYRLLAGPPTLARLTR-GETTRVLTSMVVKDDGVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS---KVIAQIPGIS 117 +GF D R F LQ+V G+G ++A+ LS EL I ++ K I IPG+ Sbjct: 60 YGFADDGARTMFHRLQTVSGLGPKLALACLSVFEPAELAGLITAGDAAAIKRIQTIPGVG 119 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQ 176 K+A R+ ELK K L + + + A + + S A + AL+ LG+ D+ Sbjct: 120 KKMAERMALELKDKIDGLYATSEPGAA----PSAPVTAGTSLAAEQVVEALIGLGF-ADK 174 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLAL 202 VV L +E+ S+++R AL Sbjct: 175 VARGVVDTLIQERPGDSSSELLRAAL 200 >gi|148243841|ref|YP_001220080.1| DNA recombination protein RuvA [Acidiphilium cryptum JF-5] gi|146400404|gb|ABQ28938.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum JF-5] Length = 206 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 71/137 (51%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + +IDV GV Y ++ P TL + T+ ++T M +I L Sbjct: 1 MITQLTGIPRRIGDQECVIDVHGVGYGVHVPSATLDMIEGEAGPVTILIQTRMSDSEISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D Q F L VQGVG A+ +LS++ EL +I + K + + GI Sbjct: 61 YGFATPADLQTFRKLVGVQGVGPATALNLLSQLAPEELWRAIREADQKALTAVKGIGPAA 120 Query: 121 ASRIMTELKGKAISLSS 137 A R+++EL+ A L++ Sbjct: 121 AKRLISELESHAAKLAA 137 >gi|163786536|ref|ZP_02180984.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1] gi|159878396|gb|EDP72452.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1] Length = 193 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G + V+ID GV Y I + T S +I D L + T++ R+D Sbjct: 1 MITHLEGKLVEKNPTDVVIDCNGVGYFINISLHTFS---QIPDRENLRLYTYLQVREDSH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S +R+ F LL SV G+GA A +LS +T ++ E I + +I + GI Sbjct: 58 SLYGFSSKTEREIFKLLISVSGIGANTARTMLSSLTPDQVKEGIASGDVALIQSVKGIGA 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ +LK K + + + + + N + A+SAL LG+ + Q+ Sbjct: 118 KTAQRVIIDLKDKVLKVYGIDELSLIPNNTHKDE----------ALSALDVLGFNKKQSE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V +L+ + + A QII+ AL+ + Sbjct: 168 KVVDRILQTQPD-ALVEQIIKEALKNL 193 >gi|121610984|ref|YP_998791.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae EF01-2] gi|166231456|sp|A1WQ66|RUVA_VEREI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|121555624|gb|ABM59773.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae EF01-2] Length = 191 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 70/126 (55%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ + L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSSFYNLPAVGERISLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R+A+ +LS ++ +L ++I Q + + ++PG+ + Sbjct: 61 YGFATAPERQAFRALIKITGVGPRMALSILSGMSVADLAQAIARQEAARLVKVPGVGKRT 120 Query: 121 ASRIMT 126 A R++ Sbjct: 121 AERLLL 126 >gi|325954455|ref|YP_004238115.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa DSM 16922] gi|323437073|gb|ADX67537.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa DSM 16922] Length = 193 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 17/190 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++ Y ++D GV Y + + T S L I + TL+ + +R D L Sbjct: 1 MITQLRGRLVEVHPSYAVVDCNGVGYWVNISLNTYSSL-VIDEVITLYTQQIIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG AM +LS ++ E+ +I +++K++ + GI K Sbjct: 60 YGFNTIEERSIFQKLISVNGVGPASAMMMLSTLSPKEIQTAIYTEDAKLLQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQA 177 A RI+ +LK K + +N E + S+P I A+SAL LG + A Sbjct: 120 AQRIIIDLKDK-----------LEEINLED--VNSLPHKNKTRIEALSALEVLGIPRKVA 166 Query: 178 TTAVVSVLKK 187 + VL K Sbjct: 167 EKTIDQVLDK 176 >gi|313114599|ref|ZP_07800107.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf. prausnitzii KLE1255] gi|310623063|gb|EFQ06510.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf. prausnitzii KLE1255] Length = 203 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 12/195 (6%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 + V++ GV Y CP L +G T++ + ++ + L+GF ++ + F + Sbjct: 15 NAVVLSCGGVGYYAQCPASVAGALPGVGKEATIYTVMSVTENDVSLYGFATEEQQACFEM 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L +V GVG +V + +LS + + +I + K G+ K+A RI+ ELK K Sbjct: 75 LTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKLAQRIVLELKDKVAK 134 Query: 135 --LSSVVQQDMSCVNKE-QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 + + +D++ + + QA S AI+ALV+LGY Q +A AV K Sbjct: 135 GFVDGISLEDVAGASADTQASQGSS-----QAIAALVSLGYSQSEAALAV----SKIDAA 185 Query: 192 ADDSQIIRLALRAIS 206 +II+LALR+++ Sbjct: 186 LPVEEIIKLALRSMA 200 >gi|223044126|ref|ZP_03614165.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14] gi|222442520|gb|EEE48626.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14] Length = 200 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 15/209 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + L+ +V+++ G+ Y I P + + +F +R+D L Sbjct: 1 MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNQDVQIFTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F L V G+G + A+ +L+ + E+ +I +N + Q PGI K Sbjct: 60 YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A +I+ +LKGK S++Q D++ N EQ+ + A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVTITEEDSESLLQVDVN--NNEQSQVVK------EAMLALEALGYSK-R 170 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V VL K+ +++ + ++L L+ + Sbjct: 171 ELSKVEKVLNKQ-SVSSVDEAVKLGLQTL 198 >gi|126663097|ref|ZP_01734095.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38] gi|126624755|gb|EAZ95445.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38] Length = 193 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + V+ID GV Y I + T S L + LF +++D L Sbjct: 1 MIAHIQGRLVEKTPTEVIIDCNGVGYHINISLHTYSLLPD-SESLKLFTFLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F LL SV GVGA +A +LS + ++++++I + + + GI K Sbjct: 60 YGFVEKQERELFKLLISVSGVGASIARTMLSSLAPSQIIQAIASNDIGTMQSMKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ +LK K + + ++ + + S NK++ A+SAL LG+ + A Sbjct: 120 AQRIILDLKEKVLKVYNLDEVSVIESNTNKDE------------ALSALEVLGFARKAAE 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 + ++++ N A +I+ AL+ Sbjct: 168 KVIDKIIRETPN-ATVENLIKQALK 191 >gi|312127829|ref|YP_003992703.1| holliday junction DNA helicase ruva [Caldicellulosiruptor hydrothermalis 108] gi|311777848|gb|ADQ07334.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor hydrothermalis 108] Length = 197 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ +I Sbjct: 1 MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNGTKFSEF--LGKEKRVYVSLKFNENLSEI 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDM---SCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 K ASRI+ ELK ++++ S KE+ + ++ AL++LGY D Sbjct: 119 KTASRIILELK-------ETLKKEFKVGSTSGKEEKTYEKLEEISL----ALLSLGYDID 167 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + S E ++ D I+LAL+ +S Sbjct: 168 EVNQVLSSEDFSELSLEDG---IKLALKKLS 195 >gi|305681259|ref|ZP_07404066.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii ATCC 14266] gi|305659464|gb|EFM48964.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii ATCC 14266] Length = 198 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 14/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + +I+ GV Y + TL L + G + + +R++ L Sbjct: 1 MIVSLRGTVIDITAHHAVIECAGVGYQVLATPTTLGHLTR-GAETFILITMIVREESQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL R F LQ+V G+G ++A+ S T EL +I ++K + +IPG+ ++ Sbjct: 60 YGFLDAATRDMFATLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + V + + AL +LG+ + A Sbjct: 120 AERMVVDLKDKVATYAAPETPTTAAVPHTDTY--------EQVLEALASLGFAEKTAEPV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +VL AD + ALRA Sbjct: 172 LTTVLA-----ADPTLTTPAALRA 190 >gi|315303293|ref|ZP_07873928.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596] gi|313628340|gb|EFR96838.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596] Length = 201 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIITTITPEYIVVETGQIGYQIITG-NPFSFQHLEGTETQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L VV D+ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LVDVVTSDIVYNTPENDIVSGLAPALEEAVLALEALGYSS-RELKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ L KE+++ D+ I+LAL+ ++ Sbjct: 176 VIPKLVKEEDLTSDAY-IKLALKLMT 200 >gi|291519343|emb|CBK74564.1| Holliday junction DNA helicase, RuvA subunit [Butyrivibrio fibrisolvens 16/4] Length = 205 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 7/184 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + E+ V+++ GV Y + + T+ L IG L + ++D + L Sbjct: 1 MFAYVRGTLSDIDENIVIVENNGVGYCLSSSMNTIRQLPAIGSEVKLNTKLIPKEDSLTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F LL SV G+G + A+ +LS +T +++ ++ +++K A PGI K Sbjct: 61 YGFYDKEELKMFELLLSVSGIGPKGALAILSSMTVSDIQFAVAGEDAKAFAACPGIGKKT 120 Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R + +LK K + + + D+S I S + ALV LGY A Sbjct: 121 AERAIIDLKDKVDIIGAFEAKITSDLSGKKSASPGI----SVKEEVLEALVALGYSASNA 176 Query: 178 TTAV 181 A+ Sbjct: 177 ARAL 180 >gi|184201011|ref|YP_001855218.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201] gi|229560091|sp|B2GIL9|RUVA_KOCRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183581241|dbj|BAG29712.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201] Length = 213 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +++V G ++ RTLS L ++G L R+D+ L Sbjct: 1 MIASVTGEVAFVGATLAVVEVSGFGIEVHASPRTLSGL-RVGATTRLHTAYIARKDEAPL 59 Query: 61 -FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGF +++ F ++ V GVG R A+ +S + + +I + K +PGI K Sbjct: 60 LFGFAQGDEKEIFTVMLGVSGVGPRTALAAVSVLGPEDARRAIAAGDDKAFTAVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL K + VQQ N+ Q +P + + AL LG+ + A Sbjct: 120 SARRIVLELADKLVLPEPPVQQ----ANQPQ-----VPVWRDQVVDALTGLGWSEKDAVR 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + L+ + + D + + LRA+ Sbjct: 171 GIEDALQTQPELGDSGNVAEI-LRAV 195 >gi|309811443|ref|ZP_07705229.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185] gi|308434590|gb|EFP58436.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185] Length = 201 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 11/167 (6%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 + G+ L +R+D + LFGF D +R F +Q+V GVG R+A+ +L+ +L Sbjct: 39 RPGESMRLATSLVVREDSLTLFGFADDDERALFEQVQTVSGVGPRLALAMLAVHPPQQLA 98 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159 +I + + + ++PGI K A RI+ EL+ K +S S + A +P+ Sbjct: 99 TAIAGGDVRALTKVPGIGKKGAERIVLELRDKVVS--------ASGDGGQAAPQAVVPAT 150 Query: 160 AIN--AISALVNLGYGQDQATTAVVSV-LKKEKNIADDSQIIRLALR 203 A AL+ LG+ QA AV V + E A+ ++RLALR Sbjct: 151 AGGDQVAEALIGLGWSAKQAEDAVAKVAARPEAEGANTPTVLRLALR 197 >gi|221141089|ref|ZP_03565582.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751470|gb|ADL65647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 200 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + S + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYSFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++D + + A F A+ AL LGY + Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169 >gi|187250915|ref|YP_001875397.1| Holliday junction resolvasome DNA binding subunit [Elusimicrobium minutum Pei191] gi|254766962|sp|B2KCD9|RUVA_ELUMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|186971075|gb|ACC98060.1| Holliday junction resolvasome, DNA binding subunit [Elusimicrobium minutum Pei191] Length = 202 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 19/210 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG I L ED VLI V GV Y + C +S L + + E+ D L Sbjct: 1 MIGYLKGQILSLSEDSVLILVNGVGYEVNCAPVAVSALEEGQETALYIAESISPYDGTVL 60 Query: 61 FGFLSDLDRQ-WFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGIS 117 +GFL+ D+Q W + S+ GA+ A+ L++ + + +I+ ++ K++ I G + Sbjct: 61 YGFLTKEDKQLWAIFKTSIPNTGAKKALEYLNKALRSVADFHNAIVKKDPKILTGIFGFT 120 Query: 118 MKIASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 K A +++ L GK A++++ V + I F + AL LGY Sbjct: 121 AKTAEKLIHSLDGKMDAVTIAGV----------PKIKIEGEAPFMSEVMMALTALGYSPM 170 Query: 176 QATTAVVSVLKKEKNIADDS--QIIRLALR 203 +A A+ + K +A+DS IIR ALR Sbjct: 171 EARKAIDQLYK--TGLANDSVENIIRAALR 198 >gi|229918406|ref|YP_002887052.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b] gi|259495643|sp|C4L522|RUVA_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229469835|gb|ACQ71607.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b] Length = 195 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 9/176 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + +Y+ +DV GV Y ++ P + + +F ++R+DQ L Sbjct: 1 MIEFVKGPVAYVCAEYITLDVSGVGYKVHVP--NPFFYREQDEHVIVFTHHYVREDQQTL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L SV G+G + A+ +++ L+++I +N K + + PG+ K Sbjct: 59 YGFRSRRERELFNKLLSVSGIGPKGALAIVASGDIDALIDAIETENEKYLTKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A ++ +LKGK L+ + + + + A ALV LGY + + Sbjct: 119 AKQMALDLKGKLSELAPDYVPNEGLFAQGASELD-------EACEALVALGYSERE 167 >gi|328947934|ref|YP_004365271.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema succinifaciens DSM 2489] gi|328448258|gb|AEB13974.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema succinifaciens DSM 2489] Length = 206 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 12/182 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + G + + I+ G+ + + P +L + +G +FV ++ + L Sbjct: 1 MFNSLTGVVTGKFPQKLFIETNGIEWDVTVPDTSLEKIPSVGIKGRVFVWMQHTENLMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L V G+G + A+ ++S I+ L E + + + ++PG+ K Sbjct: 61 FGFATENERALFFDLLKVDGIGPKGAVKIMSNISVAALAEILDSGDVDALKKVPGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LKGK LS V + + S V K A+ + I ALV++GY + +A Sbjct: 121 AGKIILSLKGK---LSFVSNEKISSAVRKNNAY--------SDVIDALVSMGYDRAKAED 169 Query: 180 AV 181 AV Sbjct: 170 AV 171 >gi|294101862|ref|YP_003553720.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM 12261] gi|293616842|gb|ADE56996.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM 12261] Length = 201 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 116/213 (54%), Gaps = 23/213 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58 M+ ++G + + E+ V++DV G+ + I C + S L D T+ + T+++ ++ Sbjct: 1 MLRSLEGKVLHIGEENVILDVNGLGFDILC---SGSALRLCEDNETIRLTTYLQVSENGA 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF S+ +R+ F+ L +V+GVG RV + VL ++ T+++ S+ ++ Q+PG+ Sbjct: 58 TLFGFSSEQEREVFIKLLTVKGVGGRVGLAVLRTLSPTQVIRSVATSDTDTFLQVPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAI-SALVNLGYGQDQ 176 K A R+ ELK + ++M E+ +PS + N + +AL +LG+ Q++ Sbjct: 118 KTAERLCFELKRH-------LSEEMLAEFAEE----EVPSILVKNTVAAALRSLGFTQNE 166 Query: 177 ATTAVVSVLKKEKNIADDSQ----IIRLALRAI 205 +V++ LK+E D+ +++ ALR + Sbjct: 167 V-YSVMNRLKREMGSEFDTTKEDILLKRALREL 198 >gi|47097030|ref|ZP_00234603.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 1/2a F6854] gi|254898301|ref|ZP_05258225.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes J0161] gi|254912207|ref|ZP_05262219.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818] gi|254936535|ref|ZP_05268232.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900] gi|47014612|gb|EAL05572.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 1/2a F6854] gi|258609129|gb|EEW21737.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900] gi|293590180|gb|EFF98514.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818] Length = 201 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGIEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRE-LKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ L KE ++ D+ I+LAL+ ++ Sbjct: 176 VIPKLAKEADLTSDA-YIKLALQLMT 200 >gi|237785621|ref|YP_002906326.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|259495637|sp|C4LIX8|RUVA_CORK4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|237758533|gb|ACR17783.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 207 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 9/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +YV+I+ GV Y L L K G+ + V ++R D I L Sbjct: 1 MIDSLHGEVLHVGLNYVVIECSGVGYRATASPSLLGTLRK-GEDARILVTMNVRDDGIDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F SD RQ F +L+ V GVG AM + S E I ++ + + GI + Sbjct: 60 YAFESDEARQMFAMLRKVSGVGPTSAMAICSIFKPDEFARIITDEDDAELRNVKGIGKRT 119 Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ +LK K S S + +A + S ALV LG+ + QA Sbjct: 120 AERIIVDLKSKVAVFDSGDSASEPQSGVGGNSEAEVDS--GVVGTVTQALVELGFPEKQA 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207 S + ++ S+I++ ALR++S Sbjct: 178 EKTATSAAAEGGSV---SEILKRALRSMSS 204 >gi|284048863|ref|YP_003399202.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM 20731] gi|283953084|gb|ADB47887.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM 20731] Length = 204 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I G ++ + ++ L+D QGV Y I+ LS + ++ ++ +R+D ++L Sbjct: 1 MIGFITGRVDHIGTNFCLVDTQGVGYRIFLNTGDLSRI-QVDQKVKIYTYLSVREDALQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS F L +V G+G +VA G+LS ++ ++ K + ++PGI K Sbjct: 60 FGFLSYDAYSLFTQLITVSGIGPKVAQGILSAAKVDAFYLAVKSRDLKFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQDQATT 179 A R++ EL K ++ ++++ + + + + + A++ L LGY Q + Sbjct: 120 AERLLLEL--KDMTGPEGLEEEGTAGGFD-GDVPEDDTTTLGAVAEGLSYLGYTQGE--- 173 Query: 180 AVVSVLKKEKNIADD--SQIIRLALRAIS 206 + VLKK K AD +++ ALR ++ Sbjct: 174 -IAQVLKKLKVTADSRAEDLLKEALRLLA 201 >gi|164687538|ref|ZP_02211566.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM 16795] gi|164603312|gb|EDQ96777.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM 16795] Length = 197 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 12/183 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T + K G +F + +R+D + L Sbjct: 1 MYSYIKGTVEEIYLDRIVLENNGIGYEINVSSFTAQSVQK-GKDAKIFTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + + F LL SV +G +V +G+LS T +L I+ ++ +++ PG+ K Sbjct: 60 CGFASRKELEMFKLLTSVSKIGPKVGLGILSCATPPQLSAYILSEDIAKLSKCPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178 A RI+ ELK K D E P+ A+ AL+ LGY +A Sbjct: 120 AERIILELKDKV---------DKESAEFEATLFNQAPTGLELDEAVEALLALGYSNVEAK 170 Query: 179 TAV 181 AV Sbjct: 171 EAV 173 >gi|317485564|ref|ZP_07944441.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6] gi|316923244|gb|EFV44453.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6] Length = 203 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 8/175 (4%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++ GV Y +Y P +T L + G ++ +R+D LFGF + +RQ F++L Sbjct: 18 VVVTEGGVGYEVYLPQQTRLQLPERGGHVRFYICHIVREDAQELFGFETWDERQTFIVLT 77 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 S+ VGAR A+G+LS +L ++ + + Q+ GI K A I ELK K Sbjct: 78 SISKVGARTALGILSAFRPDDLRRLVLEDDVLALTQVSGIGKKSAQHIFLELKYK----- 132 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 + +DM Q + S +A++ L LGY + +A + ++L +E ++ Sbjct: 133 -LKVEDMPAAASLQLGVPG--SVYRDALTGLEGLGYAEAEAAPVLKNILHEEPDL 184 >gi|268608399|ref|ZP_06142126.1| Holliday junction DNA helicase RuvA [Ruminococcus flavefaciens FD-1] Length = 206 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + +I+ GV Y T++ LG++G L+ ++R+D + L Sbjct: 1 MIYSLKGKLTVKELGFAVIECGGVGYGCKTSYNTIASLGEVGSEAMLYTHLYVREDAVEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV GVG + A+ +LS +T + + +SK + GI K Sbjct: 61 FGFATQQELSCFRLLISVSGVGPKAAISILSDVTPEKFAFLVASGDSKSFTRTKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S S + S + A+ AL+ LGY Q + T Sbjct: 121 AQRIVLELKDKISSESISGSVSGDAAAFAPSSAAPSDSVS-EALEALMVLGYTQGE-TAP 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 ++ L + D +I+ LR ++ Sbjct: 179 ILGKLDPSMSTQD---LIKETLRLLTA 202 >gi|312877191|ref|ZP_07737160.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor lactoaceticus 6A] gi|311796000|gb|EFR12360.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor lactoaceticus 6A] Length = 197 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+I+ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGIIQEVFSNYVIINYNNIYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK VV + KE+ + ++ AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVV----ATTGKEEKTYEKLEEISL----ALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S E ++ D I+LAL+ +S Sbjct: 171 QVLSSEDFSELSLEDG---IKLALKKLS 195 >gi|326803735|ref|YP_004321553.1| Holliday junction DNA helicase RuvA [Aerococcus urinae ACS-120-V-Col10a] gi|326651259|gb|AEA01442.1| Holliday junction DNA helicase RuvA [Aerococcus urinae ACS-120-V-Col10a] Length = 203 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L + V+++ G+ Y IY P + G +++ + QD IRL Sbjct: 2 MYQYIKGLLVDLTSEAVVVETAGLAYYIYFP-NPYRLSDQKGQQVQVWLYQAVSQDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L SV G+G + A+ +L+ + +I +N K + + PG+ K Sbjct: 61 YGFFDQAEKQLFLQLISVSGIGPKSALSILAYGDQAGFIAAIESENVKFLTKFPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+ K L S V +Q+ M I +AL +LGY A Sbjct: 121 AQQIILDLQSKLSRLKSEALPADQEVISDQSESSQM---MIELEAALNSLGY----AKRE 173 Query: 181 VVSVLKKE--KNIADDSQIIRLALRAISC 207 + V+KK + + + IR+ALR I+ Sbjct: 174 IDQVIKKGDFSEVDNTADAIRVALRYITL 202 >gi|15639532|ref|NP_218982.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025771|ref|YP_001933543.1| Holliday junction DNA helicase, subunit A [Treponema pallidum subsp. pallidum SS14] gi|6094206|sp|O83554|RUVA_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560146|sp|B2S3D5|RUVA_TREPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3322833|gb|AAC65527.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018346|gb|ACD70964.1| Holliday junction DNA helicase, subunit A [Treponema pallidum subsp. pallidum SS14] gi|291059920|gb|ADD72655.1| Holliday junction DNA helicase RuvA [Treponema pallidum subsp. pallidum str. Chicago] Length = 227 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 6/187 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + ++V G+ + I + + G++G +F + R+D +RL Sbjct: 1 MFESISGILTLHERERLCVEVHGIEWEIAVSAYSSAAFGEVGSHVKVFTWLYHREDALRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V+G+G + A+ VLS I++ L ++ + + +IPGI K Sbjct: 61 FGFSNVQERTLFLSLTKVEGIGPKQALKVLSSISSQALCAALDTGDLCALQRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAI-NAISALVNLGYGQD 175 A R++ LKG ++L+ S + AH C+ + I + ++ALV +GY + Sbjct: 121 AQRMLLALKG-TLALTDAASCAQSQTDDRAAHPSNLGCAPHAREIEDLVTALVQMGYDRK 179 Query: 176 QATTAVV 182 A + Sbjct: 180 MAAEVIA 186 >gi|27468243|ref|NP_764880.1| holliday junction DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|57867153|ref|YP_188781.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis RP62A] gi|251811047|ref|ZP_04825520.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|282875933|ref|ZP_06284800.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis SK135] gi|293366401|ref|ZP_06613080.1| crossover junction endoribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|33301648|sp|Q8CS90|RUVA_STAES RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71153736|sp|Q5HNQ9|RUVA_STAEQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|27315789|gb|AAO04924.1|AE016748_158 holliday junction DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|57637811|gb|AAW54599.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis RP62A] gi|251805423|gb|EES58080.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|281294958|gb|EFA87485.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis SK135] gi|291319526|gb|EFE59893.1| crossover junction endoribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|329724713|gb|EGG61219.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU144] gi|329733747|gb|EGG70073.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU045] gi|329737232|gb|EGG73486.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU028] Length = 200 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57 M IKG + L+ +V+++ G+ Y I P R L K + + +L V R+D Sbjct: 1 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTPNSYRFQKYLEKEVQIYTSLIV----REDA 56 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + Q PGI Sbjct: 57 QLLYGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDM--SCVN-KEQAHICSMPSFAINAISALVNLGYGQ 174 K A +I+ +LKGK ++++ D+ + VN EQ I S A+ AL LGY + Sbjct: 117 KKTARQIVLDLKGK-VTITEENSDDLLQTQVNGNEQNQIIS------EALLALQALGYSK 169 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + T S+ K N D++ +++ L+ + Sbjct: 170 RELTKVEKSLNKHNVNSVDEA--VKIGLQTL 198 >gi|144900756|emb|CAM77620.1| Bacterial DNA recombination protein, RuvA [Magnetospirillum gryphiswaldense MSR-1] Length = 75 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG I+ L +D+ ++DV GV Y+++C RTL L ++G L VETH+R+D I L Sbjct: 1 MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59 Query: 61 FGFLSDLDRQWFMLL 75 +GFL +R WF LL Sbjct: 60 YGFLEPGERDWFNLL 74 >gi|111023845|ref|YP_706817.1| Holliday junction DNA helicase motor protein [Rhodococcus jostii RHA1] gi|122955049|sp|Q0S1C7|RUVA_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110823375|gb|ABG98659.1| holliday junction DNA helicase [Rhodococcus jostii RHA1] Length = 200 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G L +R+D + L Sbjct: 1 MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GSEARLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPDALRAALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGK---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL+ K S S V + I + ALV LG+ QA Sbjct: 120 AERMVVELRDKVDAVASTSGAVPLGAGGGGSVRDQI----------VEALVGLGFPAKQA 169 Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202 A SVL E + S +R AL Sbjct: 170 EQAADSVL-AEAPESTTSTALRSAL 193 >gi|186683711|ref|YP_001866907.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102] gi|186466163|gb|ACC81964.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102] Length = 228 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 66/116 (56%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 ++V G+ Y + P R + L + G +F +R++ L+GF S +R F L +V Sbjct: 42 LEVNGLGYDLQVPQRLANQLPESGGVAQIFTHFQIREEVPYLYGFASPAERDLFRHLLTV 101 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 G+GA +A+ +L + +LV++II N++++ Q PG+ KIA RI ELK K + Sbjct: 102 TGIGAALAIALLDTLELPDLVQAIIAGNTQILIQAPGVGKKIAERICLELKSKLVE 157 >gi|257452123|ref|ZP_05617422.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R] gi|317058668|ref|ZP_07923153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R] gi|313684344|gb|EFS21179.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R] Length = 193 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 19/166 (11%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +Y ++V G+ Y +Y +R + ++G +++ H+R+++ +L GFL + +R+ F L Sbjct: 15 EYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKLIGFLEEKERKLFEL 73 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISMKIASRIMTELKGKA 132 L SV+G+G +A+ LS +LV I Q KV + +IP + K A +I+ + Sbjct: 74 LLSVKGIGVSLALAALSTYPVEQLVAYI--QEEKVGQLKKIPKLGEKKAQQIILD----- 126 Query: 133 ISLSSVVQQDMSCVNKEQAHI--CSMPSFAINAISALVNLGYGQDQ 176 +Q + EQ + SM ++A + SAL NLGY + + Sbjct: 127 ------IQSKLKHFGVEQRFVEDSSM-AWAEDIASALENLGYAKKE 165 >gi|148269895|ref|YP_001244355.1| Holliday junction DNA helicase RuvA [Thermotoga petrophila RKU-1] gi|166231455|sp|A5IKQ6|RUVA_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147735439|gb|ABQ46779.1| Holliday junction DNA helicase subunit RuvA [Thermotoga petrophila RKU-1] Length = 188 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ + GV + I C ++T + + G+ C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + S +DM ++ ++ AL++LGY + QA Sbjct: 120 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALISLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMKT---SELIKEALKFLS 186 >gi|319937623|ref|ZP_08012027.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp. 29_1] gi|319807265|gb|EFW03877.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp. 29_1] Length = 188 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 18/188 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + D++++D QG+ Y+IY GK ++V +++D I L Sbjct: 1 MYSYIKGIIVDMARDHIVVDNQGIGYLIYVSNPYQFTKGK---ETLVYVYQQVKEDGILL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ L V+G+G + A+G+L+ ++++I +N + +IPGI K Sbjct: 58 FGFLSKEEKDLFLKLIMVKGIGCKTAIGILATGDVNAIIQAIESKNIVYLKKIPGIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK + V+ + I + F AI L+ LGY + Q Sbjct: 118 AQQIILDLQGK---FNGVISE----------MILTSVEFD-EAIEVLIALGY-KRQEVDK 162 Query: 181 VVSVLKKE 188 V++ L +E Sbjct: 163 VMNTLSQE 170 >gi|239917790|ref|YP_002957348.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus NCTC 2665] gi|259495650|sp|C5CCI2|RUVA_MICLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239838997|gb|ACS30794.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus NCTC 2665] Length = 214 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHM--RQD 56 MI + G +E + D +I V G+ +TLS L G+ G V+TH+ ++D Sbjct: 1 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHEGRPG-----AVQTHLVVKED 55 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L+GF +R+ F +L + GVG R+A+ +LS + ++ ++ K + ++PGI Sbjct: 56 ALTLYGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGI 115 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K+A +I+ EL G+ V + + E A + ++ + + + A+ LG+ + + Sbjct: 116 GPKMARKIIVELSGRLAPTGEPVPGAEAEASDEPA-VETV--WHADVVQAMAGLGWSEKE 172 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A AV + + + D+ + + LRA Sbjct: 173 ALKAVEATVAARPEL-DEGRDVAALLRA 199 >gi|222109711|ref|YP_002551975.1| holliday junction DNA helicase ruva [Acidovorax ebreus TPSY] gi|254766958|sp|B9MCH5|RUVA_DIAST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221729155|gb|ACM31975.1| Holliday junction DNA helicase RuvA [Acidovorax ebreus TPSY] Length = 190 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + + T L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVLVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V N QA I + AL+ LGY D+ A Sbjct: 121 AERLLLELKGKLGADVGVRAH---AANDNQADI----------LQALLALGY-NDKEAAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L + + S+ I+LAL+++S Sbjct: 167 ALKALPADVGV---SEGIKLALKSLS 189 >gi|61657382|emb|CAI44298.1| holliday junction DNA helicase [Thermotoga petrophila] Length = 191 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ + GV + I C ++T + + G+ C L + QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + S +DM ++ ++ AL++LGY + QA Sbjct: 123 TAERIVMELKDE---FESAGIKDMRIYHE--------------SLEALISLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKHVYREGMKT---SELIKEALKFLS 189 >gi|226366281|ref|YP_002784064.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4] gi|254767383|sp|C1B4D0|RUVA_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226244771|dbj|BAH55119.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4] Length = 200 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G L +R+D + L Sbjct: 1 MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GTEARLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPEALRSALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGK--AI-SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL+ K A+ S S V + I + ALV LG+ QA Sbjct: 120 AERMVVELRDKVDAVGSTSGAVPLGAGGGGSVRDQI----------VEALVGLGFPAKQA 169 Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202 A SVL E + S +R AL Sbjct: 170 EQATDSVL-AEAPESTTSSALRSAL 193 >gi|226306411|ref|YP_002766371.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4] gi|259495653|sp|C0ZZ47|RUVA_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226185528|dbj|BAH33632.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4] Length = 199 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G LF +R+D + L Sbjct: 1 MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++++ V + S S + AL LG+ QA A Sbjct: 120 AERMVVELRDKVDAVATTAGAASGAV------VGS--SIRDQIVEALEGLGFPIKQAEQA 171 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 SVL E A S +R AL Sbjct: 172 TDSVL-AESPEATTSVALRSAL 192 >gi|326622940|gb|EGE29285.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 187 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 25/199 (12%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 +L++ GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 1 MLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 60 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK----- 131 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + Sbjct: 61 KTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLH 120 Query: 132 ------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVL 185 A+ L + + EQ A++ALV LGY +A+ V + Sbjct: 121 GDLFTPAVDLVLTSPASPTSEDAEQ-----------EAVAALVALGYKPQEASRMVSKIA 169 Query: 186 KKEKNIADDSQIIRLALRA 204 + + A +IR ALRA Sbjct: 170 RPD---ASSETLIRDALRA 185 >gi|257431064|ref|ZP_05607443.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 68-397] gi|257433750|ref|ZP_05610108.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus E1410] gi|257436665|ref|ZP_05612709.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M876] gi|257278267|gb|EEV08909.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 68-397] gi|257281843|gb|EEV11980.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus E1410] gi|257284016|gb|EEV14139.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M876] Length = 203 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 4 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 63 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++D + + A F A+ AL LGY + Sbjct: 123 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSK 172 >gi|49483886|ref|YP_041110.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA252] gi|257425766|ref|ZP_05602190.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428426|ref|ZP_05604824.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 65-1322] gi|282904222|ref|ZP_06312110.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C160] gi|282906048|ref|ZP_06313903.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908961|ref|ZP_06316779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911278|ref|ZP_06319080.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914447|ref|ZP_06322233.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M899] gi|282919416|ref|ZP_06327151.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C427] gi|282924793|ref|ZP_06332459.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C101] gi|283958402|ref|ZP_06375853.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus A017934/97] gi|293503520|ref|ZP_06667367.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 58-424] gi|293510539|ref|ZP_06669244.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M809] gi|293537082|ref|ZP_06671762.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M1015] gi|295428217|ref|ZP_06820849.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590815|ref|ZP_06949453.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus MN8] gi|56749557|sp|Q6GG62|RUVA_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49242015|emb|CAG40713.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA252] gi|257271460|gb|EEV03606.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275267|gb|EEV06754.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 65-1322] gi|282313159|gb|EFB43555.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C101] gi|282317226|gb|EFB47600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C427] gi|282321628|gb|EFB51953.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M899] gi|282324973|gb|EFB55283.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327225|gb|EFB57520.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331340|gb|EFB60854.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595840|gb|EFC00804.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C160] gi|283790551|gb|EFC29368.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus A017934/97] gi|290919927|gb|EFD96995.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M1015] gi|291095186|gb|EFE25451.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 58-424] gi|291466430|gb|EFF08951.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M809] gi|295128575|gb|EFG58209.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575701|gb|EFH94417.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus MN8] gi|312437891|gb|ADQ76962.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH60] gi|315195545|gb|EFU25932.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus CGS00] Length = 200 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++D + + A F A+ AL LGY + Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSK 169 >gi|182439809|ref|YP_001827528.1| Holliday junction DNA helicase RuvA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780473|ref|ZP_08239738.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf. griseus XylebKG-1] gi|229560130|sp|B1W3G3|RUVA_STRGG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|178468325|dbj|BAG22845.1| putative Holliday junction DNA helicase subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660806|gb|EGE45652.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf. griseus XylebKG-1] Length = 208 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 19/215 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGREARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFANDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A +++ ELK G+ + + + QQ + + S + +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGEPVG-AHIGQQGIGT------PVTS--GWRDQLQAALIGLGYASREA 170 Query: 178 TTAVVSVLKK-EKNIADDS-----QIIRLALRAIS 206 AV +V + E +A+ + Q++R AL+ ++ Sbjct: 171 DEAVNAVAPQAEAAVAEGTAPPVPQLLRAALQTLN 205 >gi|121595991|ref|YP_987887.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42] gi|166229625|sp|A1WC36|RUVA_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120608071|gb|ABM43811.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42] Length = 190 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + + T L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V N QA I + AL+ LGY D+ A Sbjct: 121 AERLLLELKGKLGADVGVRAH---AANDNQADI----------LQALLALGY-NDKEAAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L + + S+ I+LAL+++S Sbjct: 167 ALKALPADVGV---SEGIKLALKSLS 189 >gi|212704638|ref|ZP_03312766.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098] gi|212672037|gb|EEB32520.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098] Length = 203 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 7/169 (4%) Query: 23 GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82 GV Y + P T++ L G+ L+ +R+D +LFGF + +RQ F +L ++ VG Sbjct: 24 GVGYELDLPAHTMASLPGRGESVALYTSLVVREDAQQLFGFATFEERQVFEVLLTISKVG 83 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD 142 AR A+ +LS +L ++ ++ + ++ GI K A + ELK K + + V Q Sbjct: 84 ARTALAILSLYRPDDLRRIVLEEDVDALTRVSGIGKKTAQHVFLELKYK-LKVEDVPQAA 142 Query: 143 MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 + N + + + L NLGY +D+ V ++L +E ++ Sbjct: 143 VLAPNGRPGSVFR------DVLDGLSNLGYSEDECAPVVKNILLQEPDL 185 >gi|215427996|ref|ZP_03425915.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T92] gi|289751217|ref|ZP_06510595.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T92] gi|289691804|gb|EFD59233.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T92] Length = 196 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L V GVG R+AM L+ A L + + N + ++PGI + Sbjct: 60 YGFPDGETRDLFLTLLLVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V H P + ALV LG+ QA A Sbjct: 120 AERMVLELRDK------VGVAATGGALSTNGHAVRSP-----VVEALVGLGFAAKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 +VL + A S +R AL Sbjct: 169 TDTVLAANHD-ATTSSALRSAL 189 >gi|218264168|ref|ZP_03478052.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii DSM 18315] gi|218222214|gb|EEC94864.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii DSM 18315] Length = 197 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 8/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T + D ++V +R+D L Sbjct: 1 MIEYIKGEIVELTPARMVLECAGIGYELNISLNTYTFYNGKAD-GKVYVYEIIREDAHVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F++L +V GVG A +LS ++ +ELV +I ++ + + GI K Sbjct: 60 FGFAGIEERELFLMLTTVPGVGPNTARMILSSLSPSELVRAIADKDENSLVAVKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K ++ + ++ V+ + S + A A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKAV-----EGLTTVSTPKTP-ASNNAVAEEAVAALVMLGFQKAASQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++LK ++A + Q+I+ ALR Sbjct: 174 VHTILKGSPSLAVE-QVIKTALR 195 >gi|332295726|ref|YP_004437649.1| Holliday junction ATP-dependent DNA helicase ruvA [Thermodesulfobium narugense DSM 14796] gi|332178829|gb|AEE14518.1| Holliday junction ATP-dependent DNA helicase ruvA [Thermodesulfobium narugense DSM 14796] Length = 194 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLS-CLGKIGDFCTLFVETHMRQDQIR 59 MI I GN+ G E+ ++++ G+ Y+I P L K GD L++ + + Sbjct: 1 MIAYIVGNLIGFIENSIIVENNGLGYLIKLPPYLLEKNKNKKGDIIELYISHQFIGESQQ 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKV--IAQIPGI 116 LFGF S D + F L + GVG ++A+ ++S T L+ + L+N + + IPG+ Sbjct: 61 LFGFESISDLESFQKLLKIHGVGVKLALQIISSFKTNPTLI--LDLKNDHISSLKSIPGV 118 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A RI ELKG S V D + + A+ ALV+LG + Sbjct: 119 GEKTAKRIFEELKGCFPEFSEVKFDDRAKL----------------AVDALVSLGVSFQK 162 Query: 177 ATTAVVSVLK--KEKNIADDSQIIRLALRAI 205 A V+ LK ++ NI II +A++ I Sbjct: 163 AKEVVIDTLKDVQDLNIIKSEDIITMAIQRI 193 >gi|16800636|ref|NP_470904.1| Holliday junction DNA helicase RuvA [Listeria innocua Clip11262] gi|20455250|sp|Q92BI1|RUVA_LISIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|16414055|emb|CAC96799.1| ruvA [Listeria innocua Clip11262] gi|313618794|gb|EFR90690.1| holliday junction DNA helicase RuvA [Listeria innocua FSL S4-378] Length = 201 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG ++ + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIVKTITPEYIVVETGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRE-LKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ + KE ++ D+ I+LALR ++ Sbjct: 176 VIPKMAKENDLTSDA-YIKLALRLMT 200 >gi|296331680|ref|ZP_06874149.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675361|ref|YP_003867033.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151275|gb|EFG92155.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413605|gb|ADM38724.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 201 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 108/207 (52%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K + T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPN---PFIYKERNQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L ++++I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ +LKGK L+ VV + + + ++E+ + + A+ AL LGY + + Sbjct: 118 ARQIILDLKGK---LADVVPEMIENLFNHEERLEKQTAETALEEALEALRVLGYAEKE-I 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V+ LK++ + D Q ++ AL+ + Sbjct: 174 KKVLPHLKEDTGLTTD-QYVKKALQKL 199 >gi|169824513|ref|YP_001692124.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] gi|302380570|ref|ZP_07269035.1| Holliday junction DNA helicase RuvA [Finegoldia magna ACS-171-V-Col3] gi|303233766|ref|ZP_07320420.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4] gi|229560032|sp|B0S1J4|RUVA_FINM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167831318|dbj|BAG08234.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] gi|302311513|gb|EFK93529.1| Holliday junction DNA helicase RuvA [Finegoldia magna ACS-171-V-Col3] gi|302495200|gb|EFL54952.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4] Length = 198 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 20/182 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHMRQDQI 58 M I G I ++E+Y++++ + Y I+ + ++ T FVE R+D Sbjct: 1 MYSYIIGVITEVHENYIVLENNNIGYKIFITDFFRDNVSAFDEYKVYTEFVE---REDAS 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S +R+ F LL V +G + AM +LS +T E +II + K++ Q PG+ Sbjct: 58 ILYGFSSQKERELFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDM----SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 K ASRI+ ELK K +++D VNKE + F A AL+ LGY + Sbjct: 118 KTASRIILELKEK-------IEKDFVPSEKPVNKEVKR-SNDSEF---AREALLQLGYFK 166 Query: 175 DQ 176 + Sbjct: 167 ND 168 >gi|78044333|ref|YP_360355.1| Holliday junction DNA helicase RuvA [Carboxydothermus hydrogenoformans Z-2901] gi|90134706|sp|Q3ABX9|RUVA_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77996448|gb|ABB15347.1| Holliday junction DNA helicase RuvA [Carboxydothermus hydrogenoformans Z-2901] Length = 195 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D V++DV G+ + + R L L + ++ +R+D L Sbjct: 1 MIAVLKGKVLDKTLDSVVVDVNGIGFKVAVLPRELGSL-NLNSEVVMYTSLQVREDGWFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R++F LL SV G+G + A+ +L+ T +L I ++ K + ++PG+ K Sbjct: 60 YGFSDEETRKFFDLLLSVSGIGPKAALAILNEFTPEKLNWVIANKDEKALTKVPGVGKKN 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN 147 A R+ ELK K I +S + S N Sbjct: 120 AQRLFLELKDK-IGYTSFTSNEESVEN 145 >gi|313888460|ref|ZP_07822127.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845489|gb|EFR32883.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 194 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 20/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + Y++++ G+ YI+ R L + + + + +R+D L Sbjct: 1 MIEFLRGRVHSTDRGYLVLESNGIGYIVNMVERELHTFYE-NEEVFINIRLVLREDAAIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LL SV G+G ++AMG+L + + II ++ K + ++PGI K Sbjct: 60 YGFRHIETRDAFDLLTSVTGIGPKLAMGILDGDDVFNIAKYIISKDEKSLTKLPGIGKKT 119 Query: 121 ASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A RI+ ELK K A+ L+S+ D+ + ++ +A+ AL++LGY Sbjct: 120 AQRIILELKDKVEKLALDLTSMT-DDVEIIEEKDD----------SAVEALISLGYNVYD 168 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 A A L+K D S+ IR AL+ Sbjct: 169 AKKA----LEKVDPSLDISERIREALK 191 >gi|300774281|ref|ZP_07084145.1| crossover junction ATP-dependent DNA helicase RuvA [Chryseobacterium gleum ATCC 35910] gi|300506925|gb|EFK38059.1| crossover junction ATP-dependent DNA helicase RuvA [Chryseobacterium gleum ATCC 35910] Length = 194 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ L Y +I+VQGV Y + + T L + LF++ +R+D L Sbjct: 1 MIFSLQGIVQELTPTYAVINVQGVGYYVGISLMTSQTL-VLNQQTFLFIQQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F LL SV GVGA A+ +LS ++ E+ +I+ NS +I + GI K Sbjct: 60 FGFNTRSEKEMFNLLISVNGVGAVSALILLSTLSLDEIASAILSGNSALIQKAKGIGAKT 119 Query: 121 ASRIMTELKGK 131 A RI+ +LK K Sbjct: 120 AERIIVDLKDK 130 >gi|163814140|ref|ZP_02205532.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759] gi|158450589|gb|EDP27584.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759] Length = 208 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 8/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G +E + ++++ G+ Y + + ++ L + +F +R+D+I L Sbjct: 1 MISYITGTLEYQSGNSIVVECGGIGYSMMISGQFMNRLPAMHSHIKVFTYMSVREDEISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L SV GVG + AM +LS +T EL +++ ++ K I + GI K Sbjct: 61 YGFYDRDELEVFKVLLSVNGVGPKAAMSILSALTVNELRLAVVSEDVKAITRANGIGTKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS-CVNKEQAHICSMPSFAI----NAISALVNLGYGQD 175 ASRI+ ELK K + L ++ +N + + I N ++AL LGY Sbjct: 121 ASRIILELKDK-LRLEDMIDAAYEDAMNGSRVGSGGVAQSDIDTRANVVAALTALGYSGV 179 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A AV V + D+ Q+++ +L+ I Sbjct: 180 EAGRAVNRVEGWQD--MDEEQLLKASLKNI 207 >gi|223938504|ref|ZP_03630396.1| Holliday junction DNA helicase RuvA [bacterium Ellin514] gi|223892766|gb|EEF59235.1| Holliday junction DNA helicase RuvA [bacterium Ellin514] Length = 201 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V +DV GV Y + P+ + L + G L +R+D L Sbjct: 1 MINFLHGKLVEALPTQVTVDVNGVGYEVLIPLSSFDKLPQPGGEVKLLTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF++ +R+ F +L+ +V G+G ++A+ +LS + T L ++ + K ++QI G+ K Sbjct: 61 YGFMTAGEREMFRLLMNTVTGIGPKLALNILSGMNVTMLRGAVSNGDVKSLSQISGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQAT 178 A RI+ ELK K + + S P +N A+ AL+ LG+ Q +A Sbjct: 121 TAERIVVELKDK-------MGAAGAWEAASAQRSLSEPDQRVNDAVLALMALGFKQPEAH 173 Query: 179 TAVVS---VLKKEKNIADDSQIIRLALR 203 V S +L ++ + D ++R +L+ Sbjct: 174 DTVRSAQVLLGQQATVED---LVRASLK 198 >gi|307718817|ref|YP_003874349.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM 6192] gi|306532542|gb|ADN02076.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM 6192] Length = 197 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G G+ + VLI+ G+ + I P LS L GD L V + R+D + L Sbjct: 1 MLYSLSGVYRGIEGEKVLIETGGLTWEIDVPSSLLSQLPDPGDSLLLHVYLYHREDVLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R+ F+ L VQG+G R A+ ++S + E I ++ +A+ PGI K Sbjct: 61 IGFASREERRLFLDLLKVQGIGPRQALRIISSVPVPLFREIIQKEDLARLAKTPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG S V+Q + H + ALV +G+ + +A Sbjct: 121 AQKLLLTLKG------SYVRQGTGDTEEAGPH--------RELVEALVEMGFDRARAERV 166 Query: 181 VVSVLKK 187 + ++++ Sbjct: 167 LPDIIRE 173 >gi|224418856|ref|ZP_03656862.1| Holliday junction DNA helicase RuvA [Helicobacter canadensis MIT 98-5491] gi|253828156|ref|ZP_04871041.1| Holliday junction DNA helicase motor protein [Helicobacter canadensis MIT 98-5491] gi|313142373|ref|ZP_07804566.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter canadensis MIT 98-5491] gi|253511562|gb|EES90221.1| Holliday junction DNA helicase motor protein [Helicobacter canadensis MIT 98-5491] gi|313131404|gb|EFR49021.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter canadensis MIT 98-5491] Length = 191 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 19/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 MI ++G I + I+ GV Y ++ ++T + + + GD TL +R+D Sbjct: 1 MIIALEGKIFAKEPTKIAINCTGVVYEVFISLQTSNQITQNKGDSITLLTTHIIREDVQN 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL +++ F L + GVG +VAM +LS T + + + K + ++PGI K Sbjct: 61 LFGFLESSEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVEGNDIKSMQRVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL G ++ LS Q + + + + + I AL +LGY D Sbjct: 121 SAGRILVELSGWSLELS---QNETNHKDSDYNQV----------ILALESLGYKNDIIQK 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + EKN + Q+++ AL+ I Sbjct: 168 AIKGL---EKN--EVGQMVKAALKKI 188 >gi|126696254|ref|YP_001091140.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9301] gi|166230582|sp|A3PCR4|RUVA_PROM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126543297|gb|ABO17539.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9301] Length = 225 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 83/141 (58%), Gaps = 13/141 (9%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVE 50 MI I G++ L++ +VLI+ QG+ Y I + +R K TL+V+ Sbjct: 1 MISWINGDLVDLWQTNQKFFVLINCQGLGYEIQILESFFLKLRKNQISTK---NITLWVK 57 Query: 51 THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110 ++D LFGF S+ + +F+ + S++GVG+++ +G+L++ + +E++ +I Q+ K+I Sbjct: 58 HIKKEDSDLLFGFTSNEQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLI 117 Query: 111 AQIPGISMKIASRIMTELKGK 131 +PGI K++ R++ ELK K Sbjct: 118 CSVPGIGQKMSERLILELKSK 138 >gi|289550593|ref|YP_003471497.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis HKU09-01] gi|289180125|gb|ADC87370.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis HKU09-01] Length = 202 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 6/158 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ QG+ Y I P + T++ +R+D L Sbjct: 1 MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYNQAVTIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHI 153 A +I+ +LKGK A S S+ D+S +++ +I Sbjct: 120 ARQIILDLKGKVNYTEASSNDSIHIDDISSTSQKDNYI 157 >gi|189218506|ref|YP_001939147.1| Holliday junction resolvasome, DNA-binding subunit [Methylacidiphilum infernorum V4] gi|189185364|gb|ACD82549.1| Holliday junction resolvasome, DNA-binding subunit [Methylacidiphilum infernorum V4] Length = 211 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +++++V+G+ + ++C + L + TL+ + ++++ L Sbjct: 12 MISYLKGTLIYSLFPHIIVEVRGIGFEVFCSLSLFRNLPPLYSELTLYTHLEVSENRLEL 71 Query: 61 FGFLSDLDRQ--WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 FGF DL+ Q + +L++ V GVG R A+ +L+ + +EL ++ + +++++I GI Sbjct: 72 FGF-KDLEEQLTFRLLVEKVHGVGPRTALSILNVLPPSELKAAVGRADFRLLSKIKGIGE 130 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ ELK + + + V +A+ ALV LGY + +A Sbjct: 131 KTAHRLVVELKDSWATAEASSSSGTAIVGDRVFE---------DALRALVALGYKEPEAL 181 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + V +K + D II+ L+ S Sbjct: 182 KRLRRVREKHPQM-DLEGIIKECLKLAS 208 >gi|294811584|ref|ZP_06770227.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC 27064] gi|326440227|ref|ZP_08214961.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC 27064] gi|294324183|gb|EFG05826.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC 27064] Length = 204 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L ++ V GV ++C TL+ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + + + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119 Query: 121 ASRIMTELKGK 131 A +++ ELK + Sbjct: 120 AQKLLLELKDR 130 >gi|254391315|ref|ZP_05006519.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces clavuligerus ATCC 27064] gi|197705006|gb|EDY50818.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces clavuligerus ATCC 27064] Length = 253 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L ++ V GV ++C TL+ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + + + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119 Query: 121 ASRIMTELK 129 A +++ ELK Sbjct: 120 AQKLLLELK 128 >gi|253732298|ref|ZP_04866463.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724087|gb|EES92816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 200 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + ++ + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKQLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++D + + A F A+ AL LGY + Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169 >gi|182415003|ref|YP_001820069.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1] gi|229560110|sp|B1ZN17|RUVA_OPITP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|177842217|gb|ACB76469.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1] Length = 200 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 17/188 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + +++V G Y ++ P+ T L G L R+D L Sbjct: 1 MITSIQGTLVSATPLQAIVEVAGFGYEVHIPVTTAERLPAAGAAVKLHTLVIYREDSQTL 60 Query: 61 FGFLSDLDRQWF-MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S +R +F ++++ V GVG ++A+ ++SR+ L +I + + +A+ PGI K Sbjct: 61 YGFASPAERDFFRLMIEHVTGVGPKMALSIMSRLALPSLESAIRMGDVASLAKCPGIGKK 120 Query: 120 IASRIMTELK------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ EL+ G A L++ Q + AH +A++ALV LGY Sbjct: 121 TAERLVVELRTKVGATGAAPGLAT--QPAAAASPGASAH--------RDAVAALVALGYR 170 Query: 174 QDQATTAV 181 A AV Sbjct: 171 SADADEAV 178 >gi|330466911|ref|YP_004404654.1| Holliday junction DNA helicase RuvA [Verrucosispora maris AB-18-032] gi|328809882|gb|AEB44054.1| Holliday junction DNA helicase RuvA [Verrucosispora maris AB-18-032] Length = 200 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +I+V GV + C T++ L ++G L +R+D + L Sbjct: 1 MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D + F LLQ+ GVG R+A VL+ T + ++I ++ + ++PGI K Sbjct: 60 YGFADDDAKALFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELK 129 A R++ EL+ Sbjct: 120 AERLVLELR 128 >gi|295102071|emb|CBK99616.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium prausnitzii L2-6] Length = 203 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V+I GV Y CP L +G+ T++ ++ ++ + L Sbjct: 1 MIYSLTGKIIKKTLNAVVICCGGVGYYAQCPASVAGALPGVGNEATIYTVMNVTENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F LL SV GVGA+V + +LS + + +I + K G+ K+ Sbjct: 61 YGFASEEQQACFELLTSVSGVGAKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ D+ V + + A AI+ALV+LGY Q +A A Sbjct: 121 AQRIVLELKDK-VAKGFAAGIDLENVAGAASDTAAA-QGAGQAIAALVSLGYSQSEAALA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V K +II+LALR+++ Sbjct: 179 V----SKIDGTLPVEEIIKLALRSMA 200 >gi|162447235|ref|YP_001620367.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A] gi|189045740|sp|A9NF61|RUVA_ACHLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161985342|gb|ABX80991.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A] Length = 186 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 75/134 (55%), Gaps = 3/134 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ GV Y++ P+ KIG+ T+ H+R+D +L Sbjct: 1 MYRYIKGIVTQINPQHIVVENNGVGYLVLSPV---PYQYKIGEETTVVTYLHVREDIFQL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F+ L SV G+G + AM +++ +++ +I ++K + + PGI MK Sbjct: 58 YGFKDEETLNLFLKLISVSGIGPKSAMSIVAFDDTNKIIAAIETSDAKYLTKFPGIGMKS 117 Query: 121 ASRIMTELKGKAIS 134 A +I+ +LKGK ++ Sbjct: 118 AQQIILDLKGKLVN 131 >gi|258648476|ref|ZP_05735945.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC 51259] gi|260851236|gb|EEX71105.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC 51259] Length = 197 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++ GV Y + + T + + + L+V +R+D L Sbjct: 1 MIDYIKGQIGELTPTSCTLETCGVGYELLISLNTYTAIQDRKE-AKLYVYEVIREDAYLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LL SV GVG + A +LS + EL I ++N K++ + GI K Sbjct: 60 YGFSTKQERQLFTLLISVSGVGGQTAKVILSSFSPGELANIIQMENVKLLRGVKGIGPKA 119 Query: 121 ASRIMTELKGKAISLS--SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ +LK K + + + VQQ + A ++ SAL LG+ + Sbjct: 120 AQRIVLDLKDKVVGIEGGTTVQQGAANAVNANAVAEAV--------SALTTLGFPPAASQ 171 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 V ++L++ N+ + QII+ AL+ Sbjct: 172 KCVAALLQENPNLPIE-QIIKQALK 195 >gi|297588495|ref|ZP_06947138.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia magna ATCC 53516] gi|297573868|gb|EFH92589.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia magna ATCC 53516] Length = 198 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 12/178 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHMRQDQI 58 M I G I ++E+Y++++ + Y ++ + ++ T FVE R+D Sbjct: 1 MYSYIIGVITEVHENYIVLENNKIGYKVFITDFFRDNVSAFDEYKVYTEFVE---REDAS 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S +R F LL V +G + AM +LS +T E +II + K++ Q PG+ Sbjct: 58 ILYGFSSQKERDLFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K ASRI+ ELK K +++D K S + A AL+ LGY ++ Sbjct: 118 KTASRIILELKEK-------IEKDFVPSEKPVTKEVKKSSDSEFAREALLQLGYFKND 168 >gi|148244503|ref|YP_001219197.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius okutanii HA] gi|146326330|dbj|BAF61473.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius okutanii HA] Length = 202 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MIGK+ G I +L++V + Y I C ++S +GD L + TH+ +++ Sbjct: 3 MIGKLSGTILEKNPPEILLEVDKIGYEILC---SMSSFYAMGDEEQLSLYTHLSIKENAH 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF+S ++ F L + G+G +VA+ +LS + L++ I N ++A+ PGI + Sbjct: 60 ILYGFISKDEKTLFRELIRINGIGPKVALAILSHLDINSLIKVITDGNDTLLAKTPGIGI 119 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQA 177 K A +++ ELK + L ++ N + HI + I A +AL LG+ + + Sbjct: 120 KTAQKLIVELKDRLEKLK------LNNENHKNIHIKFKKNPNIKQASAALQALGF-KARE 172 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 + ++SV+K N +IR AL+ Sbjct: 173 SEKMLSVIK--DNSLSTKALIRQALQ 196 >gi|256847966|ref|ZP_05553410.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis 101-4-CHN] gi|256715026|gb|EEU30003.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis 101-4-CHN] Length = 200 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I + DY++I+V GV + + L + D ++V +R D I LFGF + Sbjct: 7 GTITEAHPDYLVIEVNGVGFRVQVANPYSYPLNE--DATKIYVYQAVRDDAISLFGFHNA 64 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +++ F L +V G+G + A+ +L+ LVE+I N I + PGI K ASRI+ Sbjct: 65 EEKRLFTKLLAVSGIGPKSALAILANPDHEGLVEAIANNNVSYITKFPGIGKKTASRIII 124 Query: 127 ELKGKAISL 135 EL+ K SL Sbjct: 125 ELQDKVDSL 133 >gi|310287480|ref|YP_003938738.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17] gi|309251416|gb|ADO53164.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17] Length = 206 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 11/182 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + +I+V GV Y + G +F + QD + L Sbjct: 2 MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +++ PG+ K Sbjct: 61 FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 120 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ EL G+ I L + + D +++ A I LV+LG+ A Sbjct: 121 AQKIILELAGR-IDLDQIRPEADGPSESRDPG--------ARQVIEGLVSLGWRPQTAEE 171 Query: 180 AV 181 AV Sbjct: 172 AV 173 >gi|196250113|ref|ZP_03148807.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16] gi|196210297|gb|EDY05062.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16] Length = 194 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 13/189 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + Y++ID G+ Y I+ P + T++ ++R+D L Sbjct: 1 MIEFIRGYVDYICPQYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK S Q + ++ E A AI+AL LGY + + Sbjct: 120 ARQMILDLKGKLTMFSMPTAPQPAASLSGELA----------EAIAALKALGYAERE-IE 168 Query: 180 AVVSVLKKE 188 ++ L++E Sbjct: 169 KIIPALREE 177 >gi|167847253|ref|ZP_02472761.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei B7210] Length = 162 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 21/178 (11%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L G+ L + +R+D L+GFL+ +R F L + GVGAR+A+ VLS Sbjct: 1 MSTFYNLPHTGEKVVLLTQLIVREDAHLLYGFLTPPERSTFRELLKITGVGARMALAVLS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ EL +++ LQ++ + ++PGI K A R++ L + D+ + A Sbjct: 61 GMSVAELSQAVTLQDAARLTRVPGIGKKTAERLLL-------ELKGKLGADLGPL----A 109 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206 S A + ++ALV LGY + +A A+ KN+ S+ I+L+L+A+S Sbjct: 110 GAASPSDHATDILNALVALGYSEKEALAAI-------KNVPAGTGVSEGIKLSLKALS 160 >gi|256391548|ref|YP_003113112.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM 44928] gi|256357774|gb|ACU71271.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM 44928] Length = 208 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 21/216 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +++V GV +++C TL+ L +G+ LF +R+D + L Sbjct: 1 MIAFVSGPVAAVTPTSAVVEVGGVGMLVHCGPGTLAAL-AVGEKAKLFTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK-VIAQIPGISMK 119 +GF +D +R F LLQ+ G+G +VA +LS + A + + +I + + + Q+PGI K Sbjct: 60 YGFATDDERTVFELLQTASGIGPKVAQAMLS-VHAPDTLRTIFMTGDEAALTQVPGIGKK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAH----ICSMPSFAINAISALVNLGYGQD 175 A R++ ELK + + V QAH + S+ + + AL LG+ Sbjct: 119 GAQRLLLELKERLGPPTGAV--------PGQAHNGWSRAGLGSWRVQLLEALTGLGWTAR 170 Query: 176 QATTAVVSV--LKKEKNIADDS----QIIRLALRAI 205 +A AV +V L E+ A + +++ ALR + Sbjct: 171 EADDAVSAVGPLAAEQEAAGQTVQLGPLLKAALRTM 206 >gi|329296286|ref|ZP_08253622.1| Holliday junction DNA helicase RuvA [Plautia stali symbiont] Length = 204 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ V Y ++ P+ L I +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLIEAHCVGYEVHLPMTCFYELPDINQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-------FAINAISALVNLGYG 173 A R++ E+K + + + A + PS A++ALV LGY Sbjct: 121 AERLVVEMKDRFKGMHG------DLFGGDSAFTLTTPSAQQDNNDAEAEAVAALVALGYK 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A+ V V K + AD +IR ALRA Sbjct: 175 PQEASRMVSKVGKPD---ADCETLIREALRA 202 >gi|254796929|ref|YP_003081766.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str. Illinois] gi|254590177|gb|ACT69539.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str. Illinois] Length = 193 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 108/205 (52%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + L ++ +++DV GV Y ++ R + L + G +L++E + ++ +L Sbjct: 1 MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFSENINKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +L V+G+ ++A+ +L+ + EL+ +I ++ + +I GI K+ Sbjct: 60 YGFECKKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RI+TE + L + +S N HI S A+SALV LG+ + Sbjct: 119 VKRIITETYEDFLKLDLQLPGTVSSTN---IHIVS------EAVSALVKLGFQHKPSHKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ ++ + I + +++I LAL+ + Sbjct: 170 VMEIMTNQPAI-EIAELITLALKML 193 >gi|308234389|ref|ZP_07665126.1| Holliday junction DNA helicase subunit RuvA [Atopobium vaginae DSM 15829] gi|328944205|ref|ZP_08241669.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium vaginae DSM 15829] gi|327491124|gb|EGF22899.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium vaginae DSM 15829] Length = 214 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 14/198 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-TLFVETHMRQDQIR 59 MI ++ G + ++ + V++DVQGV Y + T + L G TL V ++++ + Sbjct: 1 MIVQLTGTLVEVFPNSVVLDVQGVGYELGISANTAANLPACGQTAVTLLVRMIVKENAME 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L + GVG ++A+ VLS + ++L + ++ +AQ+PG+ K Sbjct: 61 LYGFSSRQERNAFDRLIDISGVGPKLALAVLSTYSLSDLATIALSEDVTRMAQVPGVGKK 120 Query: 120 IASRIMTEL-----KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGY 172 A R++ EL K + + + +Q S +EQA P ++ +A SAL+ +G+ Sbjct: 121 KAQRLLIELADVFAKDAELRILASAEQKTSGA-REQA-----PQHSVLDDAQSALLAMGF 174 Query: 173 GQDQATTAVVSVLKKEKN 190 + A+ KKE N Sbjct: 175 TPQEVELALKPYDKKECN 192 >gi|224283112|ref|ZP_03646434.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium bifidum NCIMB 41171] gi|313140261|ref|ZP_07802454.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium bifidum NCIMB 41171] gi|313132771|gb|EFR50388.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium bifidum NCIMB 41171] Length = 205 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 11/182 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + +I+V GV Y + G +F + QD + L Sbjct: 1 MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +++ PG+ K Sbjct: 60 FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ EL G+ I L + + D +++ A I LV+LG+ A Sbjct: 120 AQKIILELAGR-IDLDQIRPEADGPSESRDPG--------AKQVIEGLVSLGWRPQTAEE 170 Query: 180 AV 181 AV Sbjct: 171 AV 172 >gi|16079826|ref|NP_390652.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. 168] gi|221310713|ref|ZP_03592560.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. 168] gi|221315037|ref|ZP_03596842.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319958|ref|ZP_03601252.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. JH642] gi|221324239|ref|ZP_03605533.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. SMY] gi|321312303|ref|YP_004204590.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5] gi|3183558|sp|O05392|RUVA_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2635239|emb|CAB14734.1| Holliday junction DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|6977805|emb|CAB75330.1| RuvA protein [Bacillus subtilis subsp. subtilis str. 168] gi|291485185|dbj|BAI86260.1| Holliday junction DNA helicase motor protein [Bacillus subtilis subsp. natto BEST195] gi|320018577|gb|ADV93563.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5] Length = 201 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPN---PFIYKERSQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L ++++I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ +LKGK L+ VV + + + ++E+ + + A+ AL LGY + + Sbjct: 118 ARQIILDLKGK---LADVVPEMIENLFNHEERLEKQTAETALEEALEALRVLGYAEKE-I 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V+ LK+E + D Q ++ AL+ + Sbjct: 174 KKVLPHLKEEIGLTTD-QYVKKALQKL 199 >gi|237755451|ref|ZP_04584075.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium yellowstonense SS-5] gi|237692383|gb|EEP61367.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium yellowstonense SS-5] Length = 179 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 26/144 (18%) Query: 53 MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--I 110 +RQ+ ++L GF+S+ +R F+ L + GVG + A+ ++S + E +E I++N V + Sbjct: 47 VRQEDVKLLGFVSEEERDLFLKLIQIHGVGVKHALSIISNFSVEEFIE--IIENGDVDKL 104 Query: 111 AQIPGISMKIASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 +I GI K A RI+ ELKGK S S + Q +SALVN Sbjct: 105 TEIQGIGNKTAQRIIVELKGKIEFSESDELNQ---------------------LVSALVN 143 Query: 170 LGYGQDQATTAVVSVLKKEKNIAD 193 LGY + ++ VLK+ K+I + Sbjct: 144 LGYDKKESVKVAKKVLKETKDIKE 167 >gi|282916910|ref|ZP_06324668.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus D139] gi|283770716|ref|ZP_06343608.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus aureus subsp. aureus H19] gi|282319397|gb|EFB49749.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus D139] gi|283460863|gb|EFC07953.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus aureus subsp. aureus H19] Length = 200 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 5/195 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELSKV 175 Query: 181 VVSVLKKEKNIADDS 195 ++ K + + D++ Sbjct: 176 EKTLNKNKYDSVDEA 190 >gi|319400968|gb|EFV89187.1| holliday junction DNA helicase RuvA [Staphylococcus epidermidis FRI909] Length = 200 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57 M IKG + L+ +V+++ G+ Y I P R L K + + +L V R+D Sbjct: 1 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTPNSYRFQKYLEKEVQIYTSLIV----REDA 56 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + Q PGI Sbjct: 57 QLLYGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDM--SCVN-KEQAHICSMPSFAINAISALVNLGYGQ 174 K A +I+ +LKGK ++++ D+ + VN EQ I S A+ AL LGY + Sbjct: 117 KKTARQIVLDLKGK-VTITEENSDDLLQTQVNGNEQNQIIS------EALLALQALGYSK 169 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + S+ K N D++ +++ L+ + Sbjct: 170 RELSKVEKSLNKHNVNSVDEA--VKIGLQTL 198 >gi|311064395|ref|YP_003971120.1| holliday junction DNA helicase RuvA [Bifidobacterium bifidum PRL2010] gi|310866714|gb|ADP36083.1| RuvA Holliday junction DNA helicase [Bifidobacterium bifidum PRL2010] Length = 205 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 11/182 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + +I+V GV Y + G +F + QD + L Sbjct: 1 MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +++ PG+ K Sbjct: 60 FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ EL G+ I L + + D +++ A I LV+LG+ A Sbjct: 120 AQKIILELAGR-IDLDQIRPEADGPSESRDPG--------ARQVIEGLVSLGWRPQTAEE 170 Query: 180 AV 181 AV Sbjct: 171 AV 172 >gi|138896159|ref|YP_001126612.1| Holliday junction DNA helicase RuvA [Geobacillus thermodenitrificans NG80-2] gi|166230554|sp|A4IRB3|RUVA_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134267672|gb|ABO67867.1| Holliday junction DNA helicase RuvA [Geobacillus thermodenitrificans NG80-2] Length = 194 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 11/188 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P + T++ ++R+D L Sbjct: 1 MIEFIRGYVDYICPEYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK S M + A S+ AI+AL LGY + + Sbjct: 120 ARQMILDLKGKLTMFS------MPTAPRPAA---SLSGELAEAIAALKALGYAERE-IEK 169 Query: 181 VVSVLKKE 188 ++ L++E Sbjct: 170 IIPALREE 177 >gi|255533713|ref|YP_003094085.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366] gi|255346697|gb|ACU06023.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366] Length = 194 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 15/190 (7%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 Y++++ GV Y + + T S L + C ++ H+++D L+GF + +R+ F+ L Sbjct: 16 YIVVEAGGVGYHLNISLNTYSSLANT-ERCKVYTWLHVKEDAHTLYGFADEGERRLFLHL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL--KGKAI 133 SV G+G +LS IT E+ +I+ + +I +I GI K A R++ EL K K Sbjct: 75 ISVSGIGPNTGRMMLSSITPVEIQTAIVNADLALIQRIKGIGAKSAQRLVLELQDKLKKE 134 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 S++ ++ +E+ A+SAL+ LG+ + + A+ + +K Sbjct: 135 GSGSLIAAPLNNTVREE------------ALSALMMLGFAKPASEKAIDNAVKNGGQDLS 182 Query: 194 DSQIIRLALR 203 Q+I++AL+ Sbjct: 183 VEQMIKIALK 192 >gi|188997620|ref|YP_001931871.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp. YO3AOP1] gi|188932687|gb|ACD67317.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp. YO3AOP1] Length = 179 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 24/143 (16%) Query: 53 MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--I 110 +RQ+ +RL GF+S+ +R F+ L + GVG + A+ ++S + E +E I++N V + Sbjct: 47 VRQEDVRLLGFVSEEERDLFLKLIQIHGVGVKHALNIISNFSVEEFIE--IMENGDVDKL 104 Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 +I GI K A RI+ ELKGK I + E + + +SALVNL Sbjct: 105 TEIQGIGNKTAQRIIVELKGK-IEFN------------ESDELSQL-------VSALVNL 144 Query: 171 GYGQDQATTAVVSVLKKEKNIAD 193 GY + ++ V+K+ K+I + Sbjct: 145 GYDKKESVNVAKKVIKETKDIKE 167 >gi|291165807|gb|EFE27855.1| holliday junction DNA helicase RuvA [Filifactor alocis ATCC 35896] Length = 198 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 28/215 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G IE L D +L+ GV Y I T+ + + L+ + +R+D I L Sbjct: 1 MIGLLYGEIEELSLDSILLVCSGVGYEIQVSQNTMEHCKQHSNI-RLYTKMIVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +++ F L SV +G +V + +LS ++ I+ N + ++++ G+ K Sbjct: 60 IGFFEKSEKELFEQLTSVSKIGPKVGLSILSTYQVDQIKSYIVTANIEKLSKVSGVGKKT 119 Query: 121 ASRIMTELKGK---------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 A RI+ ELK K AI ++S + Q +AI ALV+LG Sbjct: 120 AERIVLELKDKISHFEIDNDAIEIASPINQTED-----------------DAIEALVSLG 162 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + ++++ AV V K++ ++I LAL +S Sbjct: 163 FSKNESYDAVQEV-KQQYTAQSLDELIPLALSKLS 196 >gi|258424067|ref|ZP_05686949.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635] gi|294848671|ref|ZP_06789417.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754] gi|257845688|gb|EEV69720.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635] gi|294824697|gb|EFG41120.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754] Length = 203 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 4 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 63 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++D + + A F A+ AL LGY + Sbjct: 123 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 172 >gi|226226039|ref|YP_002760145.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27] gi|259495644|sp|C1A615|RUVA_GEMAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226089230|dbj|BAH37675.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27] Length = 197 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI +++G I D V ++ GV Y P+ L G TL +R+D Sbjct: 1 MISQVRGTIMHRELDRVEIMTASGVAYECLIPLSVFESLPSEGQTVTLHTHLVVREDAWH 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F L +GVG +A+G+LS +T +V ++ ++ + ++P + K Sbjct: 61 LYGFAHAYERAVFQKLLHAKGVGPALALGILSALTPDRVVRALHEKDVLTLMRVPRVGRK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +L K + V A + +A+ AL+ LGY Q +A Sbjct: 121 KAEQIILDLADK-----------IDAVGPAPATGTAPSPLGDDAVRALIALGYNQTEADR 169 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AV +V++ D S ++R AL ++ Sbjct: 170 AVRAVVESGAP-KDVSSLVRGALSRLTA 196 >gi|57650523|ref|YP_186536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus COL] gi|82751240|ref|YP_416981.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus RF122] gi|87160146|ref|YP_494293.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195453|ref|YP_500257.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221756|ref|YP_001332578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. Newman] gi|161509868|ref|YP_001575527.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253733107|ref|ZP_04867272.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH130] gi|258450532|ref|ZP_05698594.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948] gi|262048631|ref|ZP_06021514.1| holliday junction DNA helicase [Staphylococcus aureus D30] gi|262051292|ref|ZP_06023516.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3] gi|282920191|ref|ZP_06327916.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765] gi|284024698|ref|ZP_06379096.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 132] gi|304380761|ref|ZP_07363429.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|71153735|sp|Q5HFC1|RUVA_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123098028|sp|Q2FXT3|RUVA_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123740965|sp|Q2YT88|RUVA_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123763287|sp|Q2FG85|RUVA_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|172048928|sp|A6QHI4|RUVA_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045775|sp|A8Z2H0|RUVA_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57284709|gb|AAW36803.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus COL] gi|82656771|emb|CAI81200.1| Holliday junction DNA helicase [Staphylococcus aureus RF122] gi|87126120|gb|ABD20634.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203011|gb|ABD30821.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374556|dbj|BAF67816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. Newman] gi|160368677|gb|ABX29648.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728863|gb|EES97592.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH130] gi|257861690|gb|EEV84489.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948] gi|259160929|gb|EEW45949.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3] gi|259163278|gb|EEW47837.1| holliday junction DNA helicase [Staphylococcus aureus D30] gi|282594539|gb|EFB99524.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765] gi|283470918|emb|CAQ50129.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ST398] gi|298694921|gb|ADI98143.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|302333315|gb|ADL23508.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus JKD6159] gi|304340698|gb|EFM06630.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198657|gb|EFU28985.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS01] gi|320140471|gb|EFW32325.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144010|gb|EFW35779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA177] gi|323440805|gb|EGA98514.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O11] gi|323442846|gb|EGB00471.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O46] gi|329314316|gb|AEB88729.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus aureus subsp. aureus T0131] gi|329728425|gb|EGG64862.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 21189] gi|329733154|gb|EGG69491.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 21193] Length = 200 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++D + + A F A+ AL LGY + Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169 >gi|123968451|ref|YP_001009309.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. AS9601] gi|166230584|sp|A2BQZ1|RUVA_PROMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123198561|gb|ABM70202.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. AS9601] Length = 225 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 83/141 (58%), Gaps = 13/141 (9%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVE 50 MI I G++ L++ +VLI+ QG+ Y I + ++T K TL+++ Sbjct: 1 MISWINGDLVDLWQTNQKSFVLINCQGLGYEIQILESFFLKLKTNQISTK---NITLWIK 57 Query: 51 THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110 ++D LFGF S + +F+ + S++GVG+++ +G+L++ + +E++ +I Q+ K+I Sbjct: 58 HIKKEDSDLLFGFTSKDQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLI 117 Query: 111 AQIPGISMKIASRIMTELKGK 131 +PGI K++ R++ ELK K Sbjct: 118 CSVPGIGQKMSERLILELKSK 138 >gi|34540592|ref|NP_905071.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83] gi|44888375|sp|Q7MW36|RUVA_PORGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34396905|gb|AAQ65970.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83] Length = 202 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI +KG I GL ++I+ GV Y + + T S GK +++ +R+D Sbjct: 1 MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGL--IWITQLIREDAHL 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F L SV GVG A +LS EL I + + + GI +K Sbjct: 59 LYGFSTKEERTLFGQLTSVSGVGPTTAQLILSSYAPQELAALITTGQADALKAVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK I L + + +S + + AISAL LG+ Sbjct: 119 TAQRIIVDLKGK-IQLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV S+L ++ ++A + II+ ALR Sbjct: 178 AVKSILSEDSSLAVE-DIIKRALR 200 >gi|217077241|ref|YP_002334959.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B] gi|226725448|sp|B7IHQ4|RUVA_THEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|217037096|gb|ACJ75618.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B] Length = 189 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 32/213 (15%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-------CTLFVETHM 53 MI + G +E + V ++V + Y I +G GDF ++ + + Sbjct: 1 MIHALNGKVESIENGKVYVNVNDLIYEI--------IVGDTGDFEEYINRNVKIYTKMVV 52 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 D I L+GFL + + F L V +G + A+ ++S + +V +II ++ K ++ + Sbjct: 53 NDDGISLYGFLEVIKLKLFEKLIGVNKLGPKSALKIISSNSVESVVSAIINEDVKALSSL 112 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K A RI+ ELK ++ + D+S K++ + AI ALV LG+ Sbjct: 113 PGIGPKTAERIVLELK------DTIKELDVSINEKDRK--------VLEAIEALVTLGFN 158 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 ++QA AV V K+ + D II+ ALR +S Sbjct: 159 RNQAKKAVNKVAAKDDKLDD---IIKKALRFLS 188 >gi|297571393|ref|YP_003697167.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum DSM 20595] gi|296931740|gb|ADH92548.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum DSM 20595] Length = 199 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 12/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+V GV + TLS L ++G L +R+D + L Sbjct: 1 MIASLRGIVSAIGITSAVIEVGGVGMSVQATPTTLSTL-RMGAEAHLMTSLIVREDSLTL 59 Query: 61 FGFLSDLD-RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF D+D R F +L + G+G R A+ VL+ +T L +++ +N + ++ GI K Sbjct: 60 YGF-GDIDERDVFDILTGISGIGPRTALAVLAVLTPDALRDAVATKNEAALTRVSGIGKK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL K + A +P+ A + + ALVNLG+ + +A Sbjct: 119 GAQRMILELGSK-------LGPTRGSATASGADTRVVPADA-DVLEALVNLGWNEREAAP 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV K A ++++R AL+ Sbjct: 171 AVHEATNKMPG-ASVAELLRAALQ 193 >gi|218508888|ref|ZP_03506766.1| Holliday junction DNA helicase RuvA [Rhizobium etli Brasil 5] Length = 55 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+ Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVRE 55 >gi|22298075|ref|NP_681322.1| Holliday junction DNA helicase motor protein [Thermosynechococcus elongatus BP-1] gi|34222868|sp|Q8DLG1|RUVA_THEEB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|22294253|dbj|BAC08084.1| Holliday junction DNA helicase [Thermosynechococcus elongatus BP-1] Length = 210 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 12/202 (5%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 EG + ++++V GV Y + L + +F +R+DQ+ L+GF S +R Sbjct: 15 EGGHRCALILEVNGVGYRLLVTSHLLQQYPPRPEVVQIFTHLSIREDQMLLYGFASAAER 74 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F+ L V GVG ++A+ +L + ELV++I+ N++ +++ PG+ K A RI ELK Sbjct: 75 DLFLRLIRVNGVGPQMALSLLDTLPLPELVQAIVSGNTRRLSRAPGVGHKTAERIALELK 134 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--AISALVNLGYGQDQATTAVVSVLKK 187 S +Q+M +PS A+ L+ LGY + A+ +V + Sbjct: 135 AAL----SAWRQEMGFTTAS----SGLPSEAVREELELTLLALGYSDREIAAALTAVGQT 186 Query: 188 E--KNIADDSQIIRLALRAISC 207 N +D +R A+ +S Sbjct: 187 TTLPNNSDPEAWLREAIAWLSA 208 >gi|242242914|ref|ZP_04797359.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] gi|242233629|gb|EES35941.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] Length = 200 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57 M IKG + L+ +V+++ G+ Y I P R L K + + +L V R+D Sbjct: 1 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTPNSYRFQKYLEKEVQIYTSLIV----REDA 56 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + Q PGI Sbjct: 57 QLLYGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPYEVKLAIENENDAYLTQFPGIG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDM--SCVN-KEQAHICSMPSFAINAISALVNLGYGQ 174 K A +I+ +LKGK ++++ D+ + VN EQ I S A+ AL LGY + Sbjct: 117 KKTARQIVLDLKGK-VTITEENSDDLLQTQVNGNEQNQIIS------EALLALQALGYSK 169 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + S+ K N D++ +++ L+ + Sbjct: 170 RELSKVEKSLNKHNVNSVDEA--VKIGLQTL 198 >gi|300787173|ref|YP_003767464.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei U32] gi|299796687|gb|ADJ47062.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei U32] Length = 198 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 10/185 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++V GV + + TL+ L + G+ L +R+D + L Sbjct: 1 MISSVRGEVLIVGLDHVVVEVGGVGFAVQATPATLATL-RRGEEARLHTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF R+ F LLQ+V G+G R+A+ L+ + +L +++ N V+ +PGI K Sbjct: 60 FGFADADARELFGLLQTVSGIGPRLALATLAVLDPGKLRAALVEGNITVLTSVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL+ K +L+ D+ V A + AL LG+ QA A Sbjct: 120 AERLTLELRDKVTALAGT--GDVPAVTAPGA-------LRAEVVEALAGLGFPAKQAEQA 170 Query: 181 VVSVL 185 V VL Sbjct: 171 VDKVL 175 >gi|188994697|ref|YP_001928949.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis ATCC 33277] gi|229560115|sp|B2RJ07|RUVA_PORG3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188594377|dbj|BAG33352.1| probable Holliday junction DNA helicase RuvA [Porphyromonas gingivalis ATCC 33277] Length = 202 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI +KG I GL ++I+ GV Y + + T S GK +++ +R+D Sbjct: 1 MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGL--IWITQLIREDAHL 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F L SV GVG A +LS EL I + + + GI +K Sbjct: 59 LYGFSTKEERTLFGQLTSVSGVGPTTARLILSSYAPQELAALITTGQADALKAVKGIGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK I L + + +S + + AISAL LG+ Sbjct: 119 TAQRIIVDLKGK-IQLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV S+L ++ ++A + II+ ALR Sbjct: 178 AVKSILSEDSSLAVE-DIIKRALR 200 >gi|312793294|ref|YP_004026217.1| holliday junction DNA helicase ruva [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180434|gb|ADQ40604.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 197 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ V I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGIIQEVFSNYVILNYNNVYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V + KE+ + ++ AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVA----ATTGKEEKTYEKLEEISL----ALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S E ++ D I+LAL+ +S Sbjct: 171 QVLSSEDFSELSLEDG---IKLALKKLS 195 >gi|253581541|ref|ZP_04858766.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC 27725] gi|251836611|gb|EES65146.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC 27725] Length = 198 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 90/182 (49%), Gaps = 7/182 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G +E DY+ +DV GV Y + +RT + G+ L++ ++++D +L Sbjct: 1 MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFIN-AGEEVKLYIYNYIKEDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R F +L V+G+G +A+ V+S + + + + + ++P + K Sbjct: 60 IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYNNLKRVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + +++ +LK K +L ++ + N + A + ISAL LGY + + T Sbjct: 120 SQQLILDLKSKLKTLDAL---SIDTRNDDAARHLMIEE---ELISALEGLGYSKKEINTL 173 Query: 181 VV 182 + Sbjct: 174 IT 175 >gi|222529107|ref|YP_002572989.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii DSM 6725] gi|254766939|sp|B9MRB2|RUVA_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222455954|gb|ACM60216.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii DSM 6725] Length = 197 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGIIQEVFSNYVILNYNNLYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVAKLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDM---SCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 K ASRI+ ELK ++++ S KE+ + ++ AL++LGY D Sbjct: 119 KTASRIILELK-------ETLKKEFKVASTSGKEEKTYEKLEEISL----ALLSLGYDID 167 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + S E ++ D I+LAL+ +S Sbjct: 168 EVNQVLSSEDFSELSLEDG---IKLALKKLS 195 >gi|302344655|ref|YP_003809184.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM 2075] gi|301641268|gb|ADK86590.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM 2075] Length = 193 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + D+V++DV GV Y ++ + L + G+ +L T +R D I L Sbjct: 1 MIARLRGQLAARRPDHVVVDVGGVGYRVFVSLGAFCRLPQSGEI-SLLTHTIVRDDAIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ + + F LL SV GVG ++A+ +LS + EL +I ++ +A+ PG+ K Sbjct: 60 YGFINEQEWEAFRLLVSVAGVGPKLALAILSGLEVGELWAAIRAGDAARLAKTPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L G+ V ++ A + + A +A SAL NLGY + +A A Sbjct: 120 AGRLVVDLAGRL------------PVGEQPAAAVAPGTAADDAQSALCNLGYPEAKAKKA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L + A ++RLAL+ ++ Sbjct: 168 VDKALAVAGDGAALEDLLRLALKELA 193 >gi|62147831|emb|CAH63577.1| putative holliday junction DNA helicase RuvA [Chlamydophila abortus S26/3] Length = 222 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 16 MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 75 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 76 LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 135 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q ++ + PS I AL LGY + A Sbjct: 136 TAEKLMVDLKQKLADLLPLDAQILASWEPAK------PSCMEEGIQALAALGYPKSSAER 189 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + + + + A ++I+ +AL+ Sbjct: 190 MIAEAMSELPDHASVAEILPIALK 213 >gi|28572651|ref|NP_789431.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27] gi|28410783|emb|CAD67169.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27] Length = 174 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 100/186 (53%), Gaps = 15/186 (8%) Query: 21 VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 + G+ +++ P S ++ L+ +R+D + L+GF S L+ F L ++ G Sbjct: 1 MHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFEQLITISG 57 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 VG RVA+ +LS +T E+ +++ + K + ++ G+ K+A I+ +L GK L+SV Sbjct: 58 VGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLAGTIVLQLAGK---LTSV-- 112 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 N++Q + + AL+ LG+ + ++ AV SVL+K++++ +I+R Sbjct: 113 ---PLENRKQEQAVDR---SAEIVQALIGLGWQRQESAAAVESVLEKDQSLT-MPEILRN 165 Query: 201 ALRAIS 206 ALR ++ Sbjct: 166 ALRYLA 171 >gi|227495489|ref|ZP_03925805.1| possible crossover junction endodeoxyribonuclease [Actinomyces coleocanis DSM 15436] gi|226831036|gb|EEH63419.1| possible crossover junction endodeoxyribonuclease [Actinomyces coleocanis DSM 15436] Length = 195 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 15/202 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +G ++ + ++++ G I + T + + + G+ L+ +R+D + L Sbjct: 1 MISFFQGEVQAIKPGHLVLVNGGFGLSIQVTVGTANQV-RHGELVGLYTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F +LQ+V +G R A+ L +T EL +++I + K + +IPGI K Sbjct: 60 YGFLTEDERDTFNVLQTVSKIGPRTALQALEALTPDELRQAVISSDEKTLQRIPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K + + V+ + E I+ LV+LGY + A A Sbjct: 120 AQRMLIEIGDKLGTPTGNVKLGTTVSVAE-----------TEVIAGLVSLGYSEVSAQAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V + N S+++R AL Sbjct: 169 VEPFQGSDMNT---SEMLRAAL 187 >gi|120403560|ref|YP_953389.1| Holliday junction DNA helicase RuvA [Mycobacterium vanbaalenii PYR-1] gi|166230573|sp|A1T883|RUVA_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119956378|gb|ABM13383.1| DNA recombination protein RuvA, domain I [Mycobacterium vanbaalenii PYR-1] Length = 195 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIAAVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGAEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L V G+G +A+G L+ L ++I + + +IP + K Sbjct: 60 YGFADSDARNLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDVTALTRIPKVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+ K + +S + V H P + ALV LG+ Q QA A Sbjct: 120 AELLVLTLRDKVGTSTS------AGVASAGGHGIRGP-----VVEALVGLGFAQKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 VL E A S +R AL Sbjct: 169 TDKVLANEPE-ATTSSALRAAL 189 >gi|325283106|ref|YP_004255647.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus proteolyticus MRP] gi|324314915|gb|ADY26030.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus proteolyticus MRP] Length = 196 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + ++ G+ Y ++CP TL+ L K G+ L +R+D L Sbjct: 1 MIVYLSGTVREVRTSSAVLQTGGLGYEVFCPQSTLARL-KPGEAAELHTRFVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF Q F L+ V GVG ++ + +LS + + L + I+ ++K+++ + G+ K Sbjct: 60 FGFHDTDSAQLFDLVTGVSGVGPKLGLALLSAMPVSTLAQGILDGDAKLLSSVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K V ++ + + ++ + +AI AL+ LG+ + Q T Sbjct: 120 AERLILEVQSK-------VPAHLAAPSGGSKPV-TVTTAGADAIDALMALGFREAQVRTV 171 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V +L + D+ +IR L Sbjct: 172 VAGLLADNPEQSADT-LIRKGL 192 >gi|150026160|ref|YP_001296986.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum JIP02/86] gi|166230550|sp|A6H1G0|RUVA_FLAPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149772701|emb|CAL44184.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum JIP02/86] Length = 193 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 12/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + V+ID GV Y + + T L DF LF +++D L Sbjct: 1 MIAHIQGKLVEKSPTEVVIDCNGVGYHVNISLHTYGLL-PTTDFVKLFTHLIIKEDSHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL SV G+GA +A +LS I +++ +I + I I GI +K Sbjct: 60 YGFAEKSEKEIFKLLISVSGIGANIARTMLSSIEPKQIINAIGSGDVGTIQSIKGIGVKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + +LK K + L + Q +S N + A+SAL LG+ + A Sbjct: 120 AQRTIIDLKEKVLKLYDLDQVSISQSNTNKD----------EALSALEVLGFIRKSAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + A II+ AL+ Sbjct: 170 VEKIVATMPD-ATVETIIKQALK 191 >gi|196232552|ref|ZP_03131404.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus Ellin428] gi|196223314|gb|EDY17832.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus Ellin428] Length = 201 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 9/180 (5%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL-QSVQGVGAR 84 Y + P+ + L +G + +R+D L+GF+++ +R F LL V G+G + Sbjct: 26 YHVQIPLSSYDKLPAVGASIKILTHLAIREDAHVLYGFMTNAERDLFRLLVTHVSGIGPK 85 Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-AISLSSVVQQDM 143 A+ VLS T T +++ ++ ++A+ GI K A RI+ ELK K I+ + Sbjct: 86 TALDVLSGTTVTNFKAAVVAGDAGLLAKTKGIGKKTAERIIVELKDKVGIAAAWEAASAS 145 Query: 144 SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 E+A + +A+ L+ LGY Q A AV V +K ++R AL+ Sbjct: 146 HAPTPEEAKVT-------DAVLGLIALGYKQVDAHKAVKQVQEKGGPAMTTEDLVRQALK 198 >gi|302533404|ref|ZP_07285746.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C] gi|302442299|gb|EFL14115.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C] Length = 209 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV + C T++ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGQVAALAPTLAVIEVGGVGMAVQCTPNTIAGL-RVGEPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG RVA +L T L + ++K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRVAQAMLGVHTPDALRVAFAAGDAKALTAVPGIGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELKGK + V + + + +AL+ LGY A A Sbjct: 120 AQKLLLELKGKLGAPGGV-----AVGAQRAPAAAGPAPWTEQLTAALIGLGYASRDAEEA 174 Query: 181 VVSVLKK-EKNIADD-----SQIIRLALRAIS 206 V +V + E IA Q++R AL++++ Sbjct: 175 VSAVTPQAEAAIASGGSAPVPQLLRAALQSLN 206 >gi|281355312|ref|ZP_06241806.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC BAA-548] gi|281318192|gb|EFB02212.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC BAA-548] Length = 203 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 +IDV GV Y P+ T L + G+ L + T +R+D I LFGF + +++ F L + Sbjct: 18 IIDVGGVGYEALIPLSTFDKLPQPGNKVELHIFTQVREDAITLFGFATPEEKKLFQQLIN 77 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V G+G ++A+ VLS + + +I + K +++I G+ + A R++ EL+ K L S Sbjct: 78 VSGIGGKIALSVLSSMPVSGFCSAIASGDIKSLSRISGVGKRTAERMVVELRDK---LGS 134 Query: 138 VVQQDMSCVNKEQA 151 V + + EQ Sbjct: 135 VAGGSVFVPDAEQG 148 >gi|161501897|ref|YP_219549.2| Holliday junction DNA helicase motor protein [Chlamydophila abortus S26/3] gi|90134722|sp|Q5L6Z3|RUVA_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 207 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 1 MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 61 LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q ++ + PS I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLADLLPLDAQILASWEPAK------PSCMEEGIQALAALGYPKSSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + + + + A ++I+ +AL+ Sbjct: 175 MIAEAMSELPDHASVAEILPIALK 198 >gi|7766817|pdb|1D8L|A Chain A, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region Lacking Domain Iii gi|7766818|pdb|1D8L|B Chain B, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region Lacking Domain Iii Length = 149 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 71/131 (54%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGK 131 A R++ E+K + Sbjct: 121 AERLIVEMKDR 131 >gi|327439540|dbj|BAK15905.1| holliday junction resolvasome, DNA-binding subunit [Solibacillus silvestris StLB046] Length = 251 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 94/188 (50%), Gaps = 26/188 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56 M +KG + + +Y++++ QG+ +++Y P RT + +I +V +R+D Sbjct: 46 MYDYLKGQVTRVTPEYIVLEQQGIGWMLYTPNPFAFRTSASEQQI------YVSLQVRED 99 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S R+ F L V G+G + A+ +L+ T ++++I +++ + + PG+ Sbjct: 100 AQNLYGFNSLEQRELFKKLIQVSGIGPKGALAILASGNPTSVIQAIEMEDEAFLIRFPGV 159 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--------AISALV 168 K A +++ +LKGK L V+ + E +P F +N A+ ALV Sbjct: 160 GKKTARQMILDLKGKLDMLLDHVE--LPSAENE------LPLFGVNPNEHELQEAMLALV 211 Query: 169 NLGYGQDQ 176 LGY + + Sbjct: 212 ALGYSEKE 219 >gi|310658621|ref|YP_003936342.1| FuvABC resolvasome regulatory subunit [Clostridium sticklandii DSM 519] gi|308825399|emb|CBH21437.1| component of RuvABC resolvasome, regulatory subunit [Clostridium sticklandii] Length = 199 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 101/196 (51%), Gaps = 13/196 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG +E D ++++ G+ Y I + T+ + IG+ + + +R+D I+L Sbjct: 1 MLNYIKGILEEKAVDKIVVENNGIGYEILTSLNTIEEIN-IGEKIKIHTKLLVREDDIQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + F LL SV +G ++A+ LS + ++ I+ + + +IPG+ K Sbjct: 60 VGFTSKEELSIFNLLTSVSKIGPKLALSSLSVYKSEKIKLMIVESDINSLVKIPGMGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + V D+ ++ Q +I AI ALV+LG+ + ++ Sbjct: 120 AERVILELKDK---IGVVYFTDLESNSEPQLNIGHQ------AIEALVSLGFSKKESEDV 170 Query: 181 VVSVLKKEKNIADDSQ 196 V ++ K++ +D++ Sbjct: 171 VKKII---KSVGNDTE 183 >gi|15924632|ref|NP_372166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Mu50] gi|15927222|ref|NP_374755.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus N315] gi|21283321|ref|NP_646409.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MW2] gi|49486475|ref|YP_043696.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MSSA476] gi|148268122|ref|YP_001247065.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus JH9] gi|150394190|ref|YP_001316865.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus JH1] gi|156979960|ref|YP_001442219.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Mu3] gi|253317207|ref|ZP_04840420.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006427|ref|ZP_05145028.2| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258453755|ref|ZP_05701730.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937] gi|269203267|ref|YP_003282536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ED98] gi|282893146|ref|ZP_06301380.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117] gi|282928277|ref|ZP_06335882.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102] gi|296275927|ref|ZP_06858434.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MR1] gi|297207637|ref|ZP_06924072.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911720|ref|ZP_07129163.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH70] gi|54039574|sp|P66749|RUVA_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54039575|sp|P66750|RUVA_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042203|sp|P66748|RUVA_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56749510|sp|Q6G8S7|RUVA_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200268|sp|A7X358|RUVA_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045773|sp|A6U2B0|RUVA_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045774|sp|A5ITG6|RUVA_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13701440|dbj|BAB42734.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|14247414|dbj|BAB57804.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|21204761|dbj|BAB95457.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49244918|emb|CAG43379.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MSSA476] gi|147741191|gb|ABQ49489.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus subsp. aureus JH9] gi|149946642|gb|ABR52578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus JH1] gi|156722095|dbj|BAF78512.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|257864075|gb|EEV86828.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937] gi|262075557|gb|ACY11530.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ED98] gi|282590084|gb|EFB95166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102] gi|282764464|gb|EFC04590.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117] gi|285817324|gb|ADC37811.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus 04-02981] gi|296887654|gb|EFH26552.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885966|gb|EFK81168.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH70] gi|312830028|emb|CBX34870.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129927|gb|EFT85917.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus CGS03] gi|329727620|gb|EGG64076.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 21172] Length = 200 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++D + + A F A+ AL LGY + Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169 >gi|281413717|ref|ZP_06245459.1| Holliday junction DNA helicase RuvA [Micrococcus luteus NCTC 2665] Length = 216 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHM--RQD 56 MI + G +E + D +I V G+ +TLS L G+ G V+TH+ ++D Sbjct: 3 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHEGRPG-----AVQTHLVVKED 57 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L GF +R+ F +L + GVG R+A+ +LS + ++ ++ K + ++PGI Sbjct: 58 ALTLSGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGI 117 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K+A +I+ EL G+ V + + E A + ++ + + + A+ LG+ + + Sbjct: 118 GPKMARKIIVELSGRLAPTGEPVPGAEAEASDEPA-VETV--WHADVVQAMAGLGWSEKE 174 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A AV + + + D+ + + LRA Sbjct: 175 ALKAVEATVAARPEL-DEGRDVAALLRA 201 >gi|57167798|ref|ZP_00366938.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228] gi|305432180|ref|ZP_07401344.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter coli JV20] gi|57020920|gb|EAL57584.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228] gi|304444723|gb|EFM37372.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter coli JV20] Length = 183 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 33/173 (19%) Query: 44 FCTLFVETH----------MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI 93 FC +ETH +++D + +GFL +++ F +L V GVGA AM + S + Sbjct: 34 FCAAKLETHQKYELFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGASTAMAICSSL 93 Query: 94 TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153 +++ L + V+ ++PGI K A RI+ EL + L S V D S Sbjct: 94 DVNSFYKALNLGDESVLKKVPGIGPKSAKRIIVELGDAKVQLES-VSDDKS--------- 143 Query: 154 CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A++AL++LG+ QD+ ++SVL N D S++I+ AL+ ++ Sbjct: 144 --------EALAALLSLGFKQDK----ILSVL-STCNGKDTSELIKEALKKLA 183 >gi|78777407|ref|YP_393722.1| Holliday junction DNA helicase motor protein [Sulfurimonas denitrificans DSM 1251] gi|123727548|sp|Q30R94|RUVA_SULDN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78497947|gb|ABB44487.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas denitrificans DSM 1251] Length = 188 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +V +DV GV Y ++ +++ S L G+ LF +R+D L Sbjct: 1 MIVGVRGVLVSKEPSFVHVDVGGVVYEVFISLQSFSALS--GNEVKLFTSHVIREDAQLL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA--QIPGISM 118 +GFL +++ F L + GVG +VAM + S T ++ +++L N + A ++PGI Sbjct: 59 YGFLELGEKKLFERLIKINGVGPKVAMAICSTYTPSQF--AVVLNNKDITAVQRVPGIGP 116 Query: 119 KIASRIMTELKG 130 K A RI+ EL G Sbjct: 117 KSAGRILVELSG 128 >gi|257793715|ref|ZP_05642694.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781] gi|258410986|ref|ZP_05681266.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763] gi|258420213|ref|ZP_05683168.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719] gi|258438215|ref|ZP_05689499.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A9299] gi|258443678|ref|ZP_05692017.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115] gi|258446885|ref|ZP_05695039.1| Holliday junction DNA helicase [Staphylococcus aureus A6300] gi|258448799|ref|ZP_05696911.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A6224] gi|295406763|ref|ZP_06816568.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819] gi|297245654|ref|ZP_06929519.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796] gi|257787687|gb|EEV26027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781] gi|257840136|gb|EEV64600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763] gi|257843924|gb|EEV68318.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719] gi|257848259|gb|EEV72250.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A9299] gi|257851084|gb|EEV75027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115] gi|257854460|gb|EEV77409.1| Holliday junction DNA helicase [Staphylococcus aureus A6300] gi|257858077|gb|EEV80966.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A6224] gi|294968510|gb|EFG44534.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819] gi|297177305|gb|EFH36557.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796] Length = 203 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 4 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 63 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++D + + A F A+ AL LGY + Sbjct: 123 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 172 >gi|312622645|ref|YP_004024258.1| holliday junction DNA helicase ruva [Caldicellulosiruptor kronotskyensis 2002] gi|312203112|gb|ADQ46439.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor kronotskyensis 2002] Length = 197 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 K ASRI+ ELK K +++ + + N E+ S+ AL++LGY D Sbjct: 119 KTASRIILELKETLKKEFKVATTAGKGEN--NYEKLEEISL---------ALLSLGYDID 167 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + S E ++ D I+LAL+ +S Sbjct: 168 EVYQVLSSEDFSELSLEDG---IKLALKKLS 195 >gi|325278890|ref|YP_004251432.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter splanchnicus DSM 20712] gi|324310699|gb|ADY31252.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter splanchnicus DSM 20712] Length = 193 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 13/164 (7%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 Y +I+ GV Y I + T S + + +L++ +R+D + L+GF + +R F L Sbjct: 16 YAVIECGGVGYYINISVNTYSQIVALQQ-VSLYIHQIVREDALLLYGFFNKEERTVFRQL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-AIS 134 SV G+GA A +LS +T E+ +I+ +N I + GI +K A R++ ELK K A++ Sbjct: 75 ISVSGIGANTASVMLSSMTVKEIAGAILTENVNAIKSVKGIGLKTAQRVIIELKDKIAVT 134 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 S+ E+ + + + A++ALV LG+ + QA Sbjct: 135 GSA-----------EEMNFGASVAIKEEALAALVMLGFVKAQAN 167 >gi|145652289|gb|ABP88205.1| hypothetical protein [Borrelia lonestari] Length = 195 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 23/188 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP---IRTLSCLGKIGDFCTLFVETHMRQDQ 57 MI KI G I E V+I V + ++ I L L I + ++R+++ Sbjct: 1 MINKIYGKIVEKRESSVVIVVLPFEFEVFVSSFCIEKLELLENI----EILTYIYLRENE 56 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I+LFGFL+ L+R+ F L +V G+G R A+ +LS I +E +I ++ ++I++I GI Sbjct: 57 IKLFGFLNLLEREVFENLITVDGIGPRAALRILSGIKYSEFRNAIEREDIRLISKIKGIG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 KIA +I +LKGK I S + D+ + EQ ++VN+G+ + Sbjct: 117 NKIAGKIFLKLKGKFIK-SDKLDLDIKFKDLEQ---------------SIVNMGFDRKLV 160 Query: 178 TTAVVSVL 185 + + +L Sbjct: 161 ISKIKEIL 168 >gi|254253224|ref|ZP_04946542.1| DNA recombination protein [Burkholderia dolosa AUO158] gi|124895833|gb|EAY69713.1| DNA recombination protein [Burkholderia dolosa AUO158] Length = 164 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 23/180 (12%) Query: 31 PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 P+ T L + G+ L + +R+D L+GFL+ +R F L + G+GAR+A+ VL Sbjct: 2 PMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAVL 61 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150 S ++ EL +++ +Q++ + ++PGI K A R++ ELKGK + + S Sbjct: 62 SGMSVQELAQAVTMQDAARLTRLPGIGKKTAERLLLELKGKLGADLGALAGAAS------ 115 Query: 151 AHICSMPS-FAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206 PS A + ++AL+ LGY + +A A+ KN+ S+ I+LAL+A+S Sbjct: 116 ------PSDHAADILNALLALGYSEKEALAAI-------KNVPAGTGVSEGIKLALKALS 162 >gi|300692490|ref|YP_003753485.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum PSI07] gi|299079550|emb|CBJ52228.2| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum PSI07] Length = 162 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 15/173 (8%) Query: 34 TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI 93 T L G+ L + +R+D L+GF + +R+ F L + G+GAR+A+ VLS + Sbjct: 3 TFYNLPATGEKVVLLTQQIVREDAHLLYGFGTAAERETFRQLIKISGIGARIALAVLSGM 62 Query: 94 TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153 + EL +++ LQ + + +IPGI K A R++ L + D+ V A Sbjct: 63 SVAELAQAVTLQEAGRLTRIPGIGKKTAERLLL-------ELKGKLGADLGAVPGGPA-- 113 Query: 154 CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 M A++ ++AL+ LGY +A A+ K+ S+ I+LAL+A+S Sbjct: 114 --MSDDAVDVLNALLALGYSDKEAALAI----KQVPTGTGVSEGIKLALKALS 160 >gi|229829132|ref|ZP_04455201.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM 14600] gi|229792295|gb|EEP28409.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM 14600] Length = 199 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 13/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 M I+G +E + + +++D G+ Y I P +LS +I L V T++ R D Sbjct: 1 MFSYIQGRVEEINPEGIVLDHDGIGYEIGLPQSSLS---QIRRQMQLRVYTYLQVRDDGF 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGFL D F LL V G+G + A+ +L ++ +L +I + K IAQ PGI Sbjct: 58 SLFGFLKREDLDLFKLLIGVGGIGPKGALSILGVLSVDQLRFAIAAGDDKTIAQAPGIGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ +L+ K I + ++ + +A S AI AL LGY +A Sbjct: 118 KTAQRVILDLRDK-IDFTQTLEAQLDS----KASDRSSDDIRGEAILALNALGYSSAEAL 172 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207 A+ + ++ D +IR L+ ++ Sbjct: 173 QAIRDLDISSMSVED---LIRAGLKELAL 198 >gi|289434813|ref|YP_003464685.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171057|emb|CBH27599.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 201 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTITTITPEYIVVETGQIGYQIITG-NPFSFQRLEGTDAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ V ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYST-RELKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ L KE ++ D+ I+LALR ++ Sbjct: 176 IIPKLAKEVDLTSDA-YIKLALRLMT 200 >gi|255534553|ref|YP_003094924.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium 3519-10] gi|255340749|gb|ACU06862.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium 3519-10] Length = 255 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KGN++ L V+IDV GV Y + ++T L +G L ++ +R+D L Sbjct: 62 MIYSLKGNVQELNPTSVIIDVNGVGYYVGVSLQTSEKL-VLGKETFLNIQQIIREDAHLL 120 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F LL SV GVG A+ +LS ++ E+ +I+ NS ++ ++ GI K Sbjct: 121 FGFNTISEKELFNLLISVNGVGPVSALIMLSSLSLQEIASAILSGNSLLLQKVKGIGTKT 180 Query: 121 ASRIMTELKGK 131 A RI+ +L+ K Sbjct: 181 AERIIVDLRDK 191 >gi|257440216|ref|ZP_05615971.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii A2-165] gi|257197250|gb|EEU95534.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii A2-165] Length = 202 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 13/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V++ GV Y + CP L +G TL+ + ++ I L Sbjct: 1 MIYSLSGKIIKKTLNAVVVSCGGVGYYVQCPTSVAGALPGVGREATLYTVMSVAENDISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F LL +V GVG +V + +LS + + +I + K G+ K+ Sbjct: 61 YGFATEEQQSCFELLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ---AHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ ELK K V + + +N E A A AI+ALV+LGY Q +A Sbjct: 121 AQRIVLELKDK------VAKGFVDGINLEDVGAATAAPAAQGAGQAIAALVSLGYSQSEA 174 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + + ++ + +II+LALR ++ Sbjct: 175 ALAVSKI---DASLPVE-EIIKLALRGMA 199 >gi|169629967|ref|YP_001703616.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus ATCC 19977] gi|229560105|sp|B1MCJ1|RUVA_MYCA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169241934|emb|CAM62962.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus] Length = 202 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+V+I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIASVNGEVIDIALDHVVIEAAGVGYRVNATPATLSTL-RRGTQIRLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFTDTDARDLFTTLLGVSGVGPKIAMATLAVYDAPTLRQALADGDVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + + A + + AL+ LG+ QA A Sbjct: 120 AERLVLELREKVAAAPGGTTE----LGRGTASLVRS-----QVVEALIGLGFAAKQAEQA 170 Query: 181 VVSVLKKEK---NIADDSQIIRLAL 202 +VL ++ AD S ++R AL Sbjct: 171 TDTVLAQDNPGDTGADVSGVLRSAL 195 >gi|315651980|ref|ZP_07904982.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium saburreum DSM 3986] gi|315485809|gb|EFU76189.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium saburreum DSM 3986] Length = 194 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58 MI I+G + + V ++ G+ Y I+ R + L K + + + T+++ +D Sbjct: 1 MIAYIRGIVTEKNVNTVTVECSGIGYEIFATGRDIDKLSKGSE---VLIHTYLKISEDAH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFL+ D F L V GVG + A+ +++ + + +L +I+ ++ K I G+ Sbjct: 58 TLYGFLNKDDMVMFKKLIIVNGVGPKAALSIMNTLNSFDLKIAIVTEDYKAICAAVGVGS 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 KIA +I+ ELK K V D+ + +A S S A+ ALV+LGY +A Sbjct: 118 KIAKKIILELKEK------VKPDDIGTL---EAADTSDNSVVSEALEALVSLGYSNSEAY 168 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 A+ + K + +D I++LAL+ Sbjct: 169 KAIKEIEVKNTDTTED--ILKLALK 191 >gi|257469281|ref|ZP_05633375.1| Holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC 49185] gi|317063528|ref|ZP_07928013.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC 49185] gi|313689204|gb|EFS26039.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC 49185] Length = 198 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 90/182 (49%), Gaps = 7/182 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G +E DY+ +DV GV Y + +RT + G+ L++ ++++D +L Sbjct: 1 MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFIS-AGEEVKLYIYNYIKEDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R F +L V+G+G +A+ V+S + + + + + ++P + K Sbjct: 60 IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYTNLKRVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + +++ +LK K +L ++ + N + A + ISAL LGY + + T Sbjct: 120 SQQLILDLKSKLKTLDAL---SIDTRNDDAAKHLMIEE---ELISALEGLGYSKKEINTL 173 Query: 181 VV 182 + Sbjct: 174 IT 175 >gi|332653059|ref|ZP_08418804.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16] gi|332518205|gb|EGJ47808.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16] Length = 213 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 17/196 (8%) Query: 14 EDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72 E Y V+ID GV Y TLS L K G+ +F ++R+D + L+GF + + F Sbjct: 24 EPYLVVIDCGGVGYACRTTSYTLSALKK-GEKGKVFTHLNVREDAMELYGFATQEELNLF 82 Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV GVG + A+ +LS T L SII + K + GI KIA R++ ELK K Sbjct: 83 QQLISVSGVGPKAALSILSSNTPANLALSIITGDEKALTCAQGIGKKIAQRVILELKDKL 142 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVLKKEKNI 191 +V + + + +P ++ A +AL LGY Q + A+ K I Sbjct: 143 AKGQAV---NGAGETYGGTGVTVIPENKLSEASAALAVLGYTQGEINVAL-------KGI 192 Query: 192 ADDS----QIIRLALR 203 DS QII+ AL+ Sbjct: 193 DLDSLTLEQIIKQALK 208 >gi|302335491|ref|YP_003800698.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM 7084] gi|301319331|gb|ADK67818.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM 7084] Length = 209 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 6/185 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + + +V++DV G+ Y + T + L +G+ TL +++ + Sbjct: 1 MIVQLTGTLVEVLPTHVIVDVGGIGYELGVSATTAASLPAVGEAGVTLLARMLVKESAVE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L V GVG ++A+ VLS + L ++ Q++ +A +PG+ K Sbjct: 61 LYGFASREERAVFDRLVGVSGVGPKLALAVLSTFSPASLATVVVTQDATRMATVPGVGKK 120 Query: 120 IASRIMTELKG---KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ EL+ + L +V A+ S +A SAL+ +G+ + Sbjct: 121 KAQRLLMELQDVFTRDTELRGLVGMSEPAPRSPLANTAE--SVQSDATSALLAMGFTPQE 178 Query: 177 ATTAV 181 A A+ Sbjct: 179 AELAL 183 >gi|313623659|gb|EFR93815.1| holliday junction DNA helicase RuvA [Listeria innocua FSL J1-023] Length = 201 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG ++ + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIVKTITPEYIVVETGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRE-LKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ + KE ++ D+ I+LAL+ ++ Sbjct: 176 VIPKMAKENDLTSDA-YIKLALQLMT 200 >gi|299822806|ref|ZP_07054692.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi DSM 20601] gi|299816335|gb|EFI83573.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi DSM 20601] Length = 200 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M I G + + ++++++ V Y I P S G+ +FV H+R+D + Sbjct: 1 MYDYINGTVTDITPEFIVVEAGQVGYQLITGNPFAFQSMSGQT---AKVFVYQHVREDSL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF + +R F L SV G+G + A+ +++ A L+ +I ++ + + P + Sbjct: 58 TLFGFKTKEERFLFKKLLSVSGIGPKSALAIIATGDANALIGAIEAEDDVYLTKFPSVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A +I+ +LKGK LS V KE+ + AI AL LGY + + Sbjct: 118 KTARQIILDLKGK---LSDVDTSFAKMQRKEEDLTAGLTEALEEAILALEALGYNKKE-L 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 V+ L+KE +++ D+ I+LAL+ ++ Sbjct: 174 KKVIPKLEKE-DLSSDA-YIKLALQLMT 199 >gi|313473093|ref|ZP_07813577.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153] gi|313448796|gb|EEQ67671.2| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153] Length = 195 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 14/194 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++ +DV G + IY + S G ++VE +R + I L Sbjct: 1 MYEYLEGTVTIITPSFIALDVGGQGFKIYSA-KPYSY--SEGQRIRVYVEQVVRDNDISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + AM +++ ++ L ++I + + PG+ K Sbjct: 58 YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S V+QD+ + QA +A+ AL LGY + + Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166 Query: 181 VVSVLKKEKNIADD 194 + K + AD+ Sbjct: 167 KPKLEKSTYDTADE 180 >gi|238855608|ref|ZP_04645909.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3] gi|260665332|ref|ZP_05866180.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii SJ-7A-US] gi|282933018|ref|ZP_06338412.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] gi|238831752|gb|EEQ24088.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3] gi|260560836|gb|EEX26812.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii SJ-7A-US] gi|281302872|gb|EFA95080.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] Length = 193 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 14/194 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++ +DV G + IY + S G ++VE +R + I L Sbjct: 1 MYEYLEGTVTIITPSFIALDVGGQGFKIYSA-KPYSY--SEGQRIRVYVEQVVRDNDISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + AM +++ ++ L ++I + + PG+ K Sbjct: 58 YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S V+QD+ + QA +A+ AL LGY + + Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166 Query: 181 VVSVLKKEKNIADD 194 + K + AD+ Sbjct: 167 KPKLEKSTYDTADE 180 >gi|302872058|ref|YP_003840694.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor obsidiansis OB47] gi|302574917|gb|ADL42708.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor obsidiansis OB47] Length = 197 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +Y++++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIMGTIQEVFSNYIILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V + KE+ + ++ AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVA----ATTGKEEKTYEKLEEISL----ALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S E ++ D I+LAL+ +S Sbjct: 171 QVLSSGDFSELSLEDG---IKLALKKLS 195 >gi|332530327|ref|ZP_08406273.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC 19624] gi|332040313|gb|EGI76693.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC 19624] Length = 194 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 63/126 (50%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + VL+D GV Y + + T L +G TL +R+D L Sbjct: 1 MIGRLSGTLIAKNPPEVLVDCHGVGYEVQVSMNTFYHLPVLGQPVTLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F L V GVG R A+ VLS ++ EL +++ Q + + PG+ K Sbjct: 61 YGFGEDAERAAFRELIKVSGVGPRTALAVLSGMSVAELAQAVTQQEMGRLLKAPGVGKKT 120 Query: 121 ASRIMT 126 A R++ Sbjct: 121 AERLLL 126 >gi|229495868|ref|ZP_04389594.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis ATCC 35406] gi|229317181|gb|EEN83088.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis ATCC 35406] Length = 204 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G I+ L L+DV GV Y I + + L GK L++ +R+D Sbjct: 6 MIAYIEGKIDRLSPTNALLDVGGVGYDINITLTDYTALQGKPS--ARLWITEIIREDAHL 63 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ + R +F L SV GVG A +LS T +L I ++ + GI +K Sbjct: 64 LYGFVREESRAFFEKLCSVSGVGPSTARLILSSYTPNDLASIIGNGAVDLLKNVKGIGLK 123 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK I LS+ D+S E + + + + A AL LG+ + Sbjct: 124 TAQRIVVDLKGK-IDLSAY---DLSEGMPEGGNAPEVAAVSDEAQRALKMLGFPEAAIRK 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV +VL + ++ + ++I+ AL+ Sbjct: 180 AVKAVLGADAHLPVE-EVIKQALK 202 >gi|269941127|emb|CBI49513.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus TW20] Length = 200 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 5/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 HGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++D + + A F A+ AL LGY + Sbjct: 120 ARQIVLDLKGKV----KITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSK 169 >gi|86740076|ref|YP_480476.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3] gi|86566938|gb|ABD10747.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3] Length = 247 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 8/189 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV +++C TLS L ++G+ +L +R+ ++ L Sbjct: 1 MIASLAGTVTALTPLSAVIEVGGVGLLVHCSPSTLSRL-RVGESASLATTLIVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +LQS GVG ++A VL + ++ ++ V+ ++PGI K Sbjct: 60 YGFADADARDVFEILQSAAGVGPKLAQAVLGVHDPDTVRRAVAEEDLAVLTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS----ALVNLGYGQDQ 176 A RI+ +L+ + L + + MP+ A+ + ALV LGY + Sbjct: 120 AQRIVLDLRDR---LGPPGDGAPLPGPRLTSGPEPMPADAVGVAATVREALVGLGYSGRE 176 Query: 177 ATTAVVSVL 185 A AV L Sbjct: 177 ADAAVSRAL 185 >gi|295398601|ref|ZP_06808633.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus viridans ATCC 11563] gi|294973202|gb|EFG48997.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus viridans ATCC 11563] Length = 210 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 104/209 (49%), Gaps = 16/209 (7%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 G +E +Y D V+++ G+ Y IY P R +G+ +++ + ++ IRL+GF Sbjct: 7 GQVESVYPDAVILETGGIGYYIYMANPYRFTDKIGQ-DRPVKIWLYQSVSENDIRLYGFK 65 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S ++ F+ L SV G+G + A+ +LS LV +I +++ + + PG+ K A +I Sbjct: 66 SQEEKIIFLQLISVSGIGPKSALSILSLDDNAGLVAAIQAEDNAFLMKFPGVGKKTAGQI 125 Query: 125 MTELKGK-----AISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 + +LK K A S SS + Q+ + +Q ++ M A+ +LGY Q + Sbjct: 126 VLDLKEKLPKVLAESPSSALFKQESLDIQGPDQVNLPFMHELE----EAMASLGYSQREI 181 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 V + + ++ IR+AL+ I+ Sbjct: 182 NRVVKNA--DFTGVTATAEAIRIALKFIT 208 >gi|257790728|ref|YP_003181334.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243] gi|257474625|gb|ACV54945.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243] Length = 197 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + I+V G+ Y + LS L + G + +R D + L Sbjct: 1 MIAFLKGVLAAKTATTAYIEVNGIGYAVGMSQAGLSKLPEAGAAVEVHTFLQVRDDGLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F L V GVG +VA+ LS + LV ++ Q+ + +IPG+ K Sbjct: 61 FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG + ++ + E A + + + AL+++G+ ++A A Sbjct: 121 ASRIILELKGS-------FDEGLAGLFDEAAPVVASAANLAGTREALLSMGFTSEEADVA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 LK A +S +++ AL+ Sbjct: 174 ----LKGAPEGAAESVLLQYALK 192 >gi|150020803|ref|YP_001306157.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis BI429] gi|166231454|sp|A6LLH1|RUVA_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149793324|gb|ABR30772.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis BI429] Length = 189 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 21/172 (12%) Query: 39 GKIGDFCT----LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 G DF +F + + D+I L+GF L + F L V +G + A+ +++ Sbjct: 34 GYFEDFLNEKIKVFTKMIVNDDEISLYGFSDVLKLKLFEKLILVNKLGPKSALKIITSSD 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 + +V +I+ ++ K ++ +PGI K A RI+ ELK S+ + D++ K++ Sbjct: 94 VSYIVSAIVNEDVKTLSTLPGIGPKTAERIILELK------DSMKEFDVTLTEKDKK--- 144 Query: 155 SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + AI ALV LG+ ++Q+ AV +LKK+ ++ D II+ AL+ +S Sbjct: 145 -----ILEAIEALVTLGFSRNQSKKAVTQILKKDDSLDD---IIKKALKFLS 188 >gi|313884201|ref|ZP_07817967.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola ACS-139-V-Col8] gi|312620648|gb|EFR32071.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola ACS-139-V-Col8] Length = 201 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 4/174 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + ++ Y+++ G+ Y IY P + + + +++E +R+D + L Sbjct: 1 MYEYIQGILSQIHPTYLVVTASGLAYKIYSP-NAYAWNRHLNEEVQVYLELVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL V +G + A+ +L+ T LV++I QN + + PG+ K Sbjct: 60 YGFKDMQEKELFNLLNRVSNIGPKSALSILALNDHTGLVQAIESQNVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +++ +L+GK L V D + + Q S + AL LGY Q Sbjct: 120 AQQMILDLQGK---LGDFVANDGAELAPSQQASSSNQAQFDEVAEALAGLGYSQ 170 >gi|315658088|ref|ZP_07910960.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus lugdunensis M23590] gi|315496417|gb|EFU84740.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus lugdunensis M23590] Length = 203 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 6/158 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ QG+ Y I P + T++ +R+D L Sbjct: 2 MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYYQEVTIYTSLIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 61 YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 120 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHI 153 A +I+ +LKGK A S S+ D+S +++ +I Sbjct: 121 ARQIILDLKGKVNYTEASSNDSIHIDDVSNTSQKDNYI 158 >gi|227529693|ref|ZP_03959742.1| crossover junction endoribonuclease subunit A [Lactobacillus vaginalis ATCC 49540] gi|227350359|gb|EEJ40650.1| crossover junction endoribonuclease subunit A [Lactobacillus vaginalis ATCC 49540] Length = 200 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 100/194 (51%), Gaps = 12/194 (6%) Query: 16 YVLIDVQGVCY--IIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72 Y++++V G+ Y ++ P R + K+ T++V +R D I LFGF + ++Q F Sbjct: 16 YIVVEVNGIGYRLLVANPYRYHIDKRQKV----TVYVYQAVRDDDISLFGFSDEDEKQLF 71 Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 M L +V G+G + A+ +L+ L+ +I + K + + PGI K AS+I +LK K Sbjct: 72 MQLINVSGIGPKSALAILANPDHEGLINAIANNDVKYLTRFPGIGKKTASQICLDLKDKI 131 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 L+ + + E ++ A+ A++A LGY +++ + L+KE + Sbjct: 132 ERLAPSESNLLKPLLPENENVNDALQDALEALTA---LGY-KEREVKRIKKELEKEGETS 187 Query: 193 DDSQIIRLALRAIS 206 + + +R ALR ++ Sbjct: 188 TE-EYLRHALRLLN 200 >gi|317969751|ref|ZP_07971141.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0205] Length = 225 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 17/218 (7%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + + VL+ GV Y + P R LG G L V +R+D Sbjct: 9 MIGWLQGQLADRWHLNNRFGVLLVCSGVGYEVQMPRRHWDQLGGNGTEAALHVHQVIRED 68 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R F L +V GVG ++A+G+L +++ ELV +I+ + + + Q PG+ Sbjct: 69 SWTLYGFCARHERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRQLCQAPGV 128 Query: 117 SMKIASRIMTELK-------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 + A R+ EL+ G+++ LS D+ + + + +SA Sbjct: 129 GKRTAERLSVELRTRLQQRYGESLQLSQ--SDDLQVSDSGEGPAAGVREEVQLTLSA--- 183 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAIS 206 LGY + A+ ++ + + +D +R +LR +S Sbjct: 184 LGYEALEINRALRAISPQGPELGEDGDAWLRESLRYLS 221 >gi|189485463|ref|YP_001956404.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254767397|sp|B1H0B1|RUVA_UNCTG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170287422|dbj|BAG13943.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 204 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 12/198 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFV---ETHMRQDQ 57 MI + G ++ D + IDV G+ Y I PI T L + + +++ M Sbjct: 1 MIDYLYGTLDSKSTDGITIDVNGIGYEISVPISTFLKLPETRNPIKIYIVESTAGMYGGV 60 Query: 58 IRLFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITAT--ELVESIILQNSKVIAQIP 114 I L+GF + +R+ ++L++ V G+GA+ AM +I+ + +II +N ++ +I Sbjct: 61 ISLYGFFTIEEREMYLLIKDKVHGIGAKKAMEYTDKISKSFANFKTAIISKNPSMLNEIF 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G + K A +++ LK K IS +V+ ++ K+ + AI+ L+ LGY Sbjct: 121 GFTKKTADKLIVALKDK-ISTVNVLNKE-----KQTGAETIKNTMVSEAIAGLITLGYKM 174 Query: 175 DQATTAVVSVLKKEKNIA 192 QA AV +V + +NI Sbjct: 175 QQARVAVTNVYEHNENIT 192 >gi|313206325|ref|YP_004045502.1| holliday junction DNA helicase subunit ruva [Riemerella anatipestifer DSM 15868] gi|312445641|gb|ADQ81996.1| Holliday junction DNA helicase subunit RuvA [Riemerella anatipestifer DSM 15868] gi|315023191|gb|EFT36202.1| Holliday junction DNA helicase RuvA [Riemerella anatipestifer RA-YM] gi|325336230|gb|ADZ12504.1| Holliday junction resolvasome, DNA-binding subunit [Riemerella anatipestifer RA-GD] Length = 194 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 2/146 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ L +++I+ GV Y + + T IG ++ + +R+D L Sbjct: 1 MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNTSKHFS-IGKESLIYTQQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL SV GVG AM +LS + E+ ++I+ NS V+ ++ GI K Sbjct: 60 YGFSELKEKEMFNLLISVNGVGPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV 146 A RI+ +LK K + + + D+S V Sbjct: 120 AQRIIIDLKDKVLHFGA-DESDISTV 144 >gi|312870465|ref|ZP_07730585.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3] gi|311094022|gb|EFQ52346.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3] Length = 197 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M + G I + Y+++DVQGV Y ++ P R K +FV +R D I Sbjct: 1 MYEYLTGTISIVAPQYIVVDVQGVGYKLLVANPYRFHEDSAKA---VRVFVYQAVRDDDI 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF +++ FM L +V G+G + A+ +L+ LV++I N + + PGI Sbjct: 58 SLFGFSDQAEKRLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNIGYLTKFPGIGK 117 Query: 119 KIASRIMTELKGK 131 K AS+I+ +LK K Sbjct: 118 KTASQIVLDLKDK 130 >gi|163783946|ref|ZP_02178915.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159880781|gb|EDP74316.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 180 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 33/208 (15%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + D+++I+ I P + KI + T + + RL Sbjct: 1 MIDYIKGKVIEVLNDFIVIETGNFGIKIETPHKFEKKDTKIYTYLTF------KDESFRL 54 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISM 118 FGF R+ F+ L S+ G+G + A +L + ++ ++N+++ ++ +PGI Sbjct: 55 FGFKDRQTRELFIKLTSINGIGVKHAFSILKNFNYEDF--TLAVENNRIDLLSSVPGIGK 112 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELKGK +S S P F +A+ ALV+LG+ +++ Sbjct: 113 KTASRIILELKGK-LSFS------------------EEPIFN-DAVEALVSLGFEKEKVI 152 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K ++ ++I+L+L+ +S Sbjct: 153 KIVKELSQKTNSL---EELIKLSLQKLS 177 >gi|313633143|gb|EFS00032.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL N1-067] gi|313637717|gb|EFS03086.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL S4-171] Length = 201 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIITTITPEYIVVETGQIGYQIITG-NPFSFQRLEGTDAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ V ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYST-RELKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ L KE ++ D+ I+LALR ++ Sbjct: 176 IIPKLAKEADLTSDAY-IKLALRLMT 200 >gi|108799233|ref|YP_639430.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. MCS] gi|119868349|ref|YP_938301.1| Holliday junction DNA helicase motor protein [Mycobacterium sp. KMS] gi|126434891|ref|YP_001070582.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS] gi|123369347|sp|Q1B9R0|RUVA_MYCSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230569|sp|A3PYW4|RUVA_MYCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230570|sp|A1UFA3|RUVA_MYCSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|108769652|gb|ABG08374.1| Holliday junction DNA helicase subunit RuvA [Mycobacterium sp. MCS] gi|119694438|gb|ABL91511.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. KMS] gi|126234691|gb|ABN98091.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS] Length = 196 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 12/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTESRLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++A+ L+ A L +++ + + ++PGI + Sbjct: 60 YGFADADARDLFGTLLGVSGVGPKIALATLAVYDAPTLRQALADGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ + V H P + ALV LG+ QA A Sbjct: 120 AERMVLELRDKIGPVTT-----GAGVTAVGGHAVRGP-----VVEALVGLGFAAKQAEEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 VL + + A S +R AL Sbjct: 170 CDKVLAADPD-ATTSSALRAAL 190 >gi|224476739|ref|YP_002634345.1| Holliday junction DNA helicase RuvA [Staphylococcus carnosus subsp. carnosus TM300] gi|254767387|sp|B9DNE5|RUVA_STACT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222421346|emb|CAL28160.1| holliday junction DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 201 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 4/176 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ GV Y I P + T++ +R+D L Sbjct: 1 MYAYIKGKLSQLFPTHVVVETNGVGYEIQTP-NSYRFQQYYQQEVTIYTSLVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F+ L V G+G + A+ +L+ T E+ I +N + + PGI K Sbjct: 60 YGFMSEEEKGMFLSLNKVTGIGPKSALAILAASTPNEVKIGIENENETYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A +I+ +LKGK + + + +N E + A+ AL LGY + + Sbjct: 120 ARQIILDLKGK---VQITEENPETLLNFEGSESNQTSPILDEALLALEALGYSKRE 172 >gi|291286413|ref|YP_003503229.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM 12809] gi|290883573|gb|ADD67273.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM 12809] Length = 192 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 15/190 (7%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 +ID V + + T L + G ++ MR+D + L+GF +++ F+LL + Sbjct: 18 VIDTGAVAFEMSISASTYQQLPETGQKAHVYTHFVMREDGVYLYGFSKMEEKKLFLLLIT 77 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 + VG ++A+ +LS + + + +++ +I+ IPGI K A RI+ EL+ K S+S Sbjct: 78 ISKVGPKLALAILSGMDVNKFMNAVMNSEIGLISTIPGIGKKTAERIVVELRDKFGSMSV 137 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 + E + +SAL+NLGY + AV + K + ++ Sbjct: 138 STGDEPVAGGAE------------DVVSALLNLGYSRADCQKAVNKIYKTDSGF---EEL 182 Query: 198 IRLALRAISC 207 + AL+ +S Sbjct: 183 FKGALKELSS 192 >gi|228475171|ref|ZP_04059897.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119] gi|314936245|ref|ZP_07843592.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp. hominis C80] gi|228270782|gb|EEK12184.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119] gi|313654864|gb|EFS18609.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp. hominis C80] Length = 201 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 2/132 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M IKG++ L+ +++++ G+ Y I P + + C +F +R+D Sbjct: 1 MYAYIKGHLSQLFPTHIVVETSSGIGYEIQTP-NSYRFQKYLNQECKVFTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+S+ +++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 LYGFISEEEKEMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKK 119 Query: 120 IASRIMTELKGK 131 A +I+ +LKGK Sbjct: 120 TARQIVLDLKGK 131 >gi|329945621|ref|ZP_08293354.1| Holliday junction DNA helicase RuvA, N terminal domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528624|gb|EGF55589.1| Holliday junction DNA helicase RuvA, N terminal domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 218 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 15/214 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L +IG+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RIGEEVLVHTELVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFTDVDERDSFRTLMSAKGVGAKLALAMLAVHTPNMLRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINA------ISALVNLGY 172 A R++ ++ K L V D I + +F+ A ++ALV LG+ Sbjct: 120 AQRVILDVADK---LGPVTGDDADTAMPAAKAIGDKGVETFSEGAQPSADVVAALVQLGW 176 Query: 173 GQ---DQATTAVVSVLKKEKNIADDSQIIRLALR 203 + QA TAV + + D + ++R +LR Sbjct: 177 NEASARQAVTAVEADYAEAGENPDMAALLRASLR 210 >gi|229820484|ref|YP_002882010.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM 12333] gi|259495635|sp|C5C5Q7|RUVA_BEUC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229566397|gb|ACQ80248.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM 12333] Length = 200 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 45 CTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104 C L +R+D + LFGF +R F L+Q+V GVG R+A+ +L+ T L ++ Sbjct: 44 CELHTSLVVREDSLTLFGFADADERDVFELVQTVSGVGPRLALAMLAVHTPDGLRRAVAQ 103 Query: 105 QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 ++ + ++PGI K ASRI+ EL G + + + A + + Sbjct: 104 EDLAALVRVPGIGRKGASRIVLEL-GDRLGPAQGAAPAAPVAVDDGADV----------V 152 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAIS 206 ALV LG+ QA AV VL+ A D+ ++R ALR+++ Sbjct: 153 DALVGLGWPVRQAQDAVRGVLEDADGTAPDAAGLLRAALRSLA 195 >gi|323489997|ref|ZP_08095218.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus donghaensis MPA1U2] gi|323396293|gb|EGA89118.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus donghaensis MPA1U2] Length = 198 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++I+ QG+ + I+ P G + +F+ H+R+D L Sbjct: 1 MYDYIKGTVTRVTPEYLVIEQQGIGWQIFAP--NPYSFGT--EDLQVFLHHHVREDAQLL 56 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + R+ F L SV G+G + A+ +L+ ++E+I +N + + PG+ K Sbjct: 57 FGFPTFEQRELFRKLISVSGIGPKGALAILASGQPQHVIEAIEQENESYLVKFPGVGKKT 116 Query: 121 ASRIMTELKGK 131 A +++ +LKGK Sbjct: 117 ARQMILDLKGK 127 >gi|227877607|ref|ZP_03995661.1| helicase Holliday junction [Lactobacillus crispatus JV-V01] gi|256844550|ref|ZP_05550036.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 125-2-CHN] gi|256849061|ref|ZP_05554494.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US] gi|262047543|ref|ZP_06020498.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus MV-3A-US] gi|293381579|ref|ZP_06627566.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1] gi|312977890|ref|ZP_07789636.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus CTV-05] gi|227862801|gb|EEJ70266.1| helicase Holliday junction [Lactobacillus crispatus JV-V01] gi|256613628|gb|EEU18831.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 125-2-CHN] gi|256713837|gb|EEU28825.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US] gi|260572119|gb|EEX28684.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus MV-3A-US] gi|290921849|gb|EFD98864.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1] gi|310895197|gb|EFQ44265.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus CTV-05] Length = 195 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 11/168 (6%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y +Y P G+ +F+E +R I L+GF S D+ F+ L SV G+G + Sbjct: 26 YKVYSPTPFAYTQGQK---AKVFIEQVVRDTGITLYGFQSQDDKGLFLKLLSVSGIGPKS 82 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 AM +++ + L E+I K + + PG+ K AS+I+ +LKGK L V + Sbjct: 83 AMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---LGDYVARLDRP 139 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 N E ++P +A+ AL+ LGY Q + + K N AD Sbjct: 140 DNGE-----NVPPALNDALLALIALGYTQKEVDRITPKLEKVAANTAD 182 >gi|312134958|ref|YP_004002296.1| holliday junction DNA helicase ruva [Caldicellulosiruptor owensensis OL] gi|311775009|gb|ADQ04496.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor owensensis OL] Length = 197 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 106/211 (50%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGTIQEVFSNYVILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +L+ I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILASIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDM---SCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 K ASRI+ ELK ++++ + KE+ + ++ AL++LGY D Sbjct: 119 KTASRIILELK-------ETLKKEFKVAATTGKEEKTYEKLEEISL----ALLSLGYDID 167 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + S E ++ D I+LAL+ +S Sbjct: 168 EVNQVLSSGDFSELSLEDG---IKLALKKLS 195 >gi|260898721|ref|ZP_05907217.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus Peru-466] gi|308089527|gb|EFO39222.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus Peru-466] Length = 147 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 72/131 (54%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGK 131 A R++ E+K + Sbjct: 121 AERLVVEMKDR 131 >gi|259502857|ref|ZP_05745759.1| crossover junction endoribonuclease subunit A [Lactobacillus antri DSM 16041] gi|259169224|gb|EEW53719.1| crossover junction endoribonuclease subunit A [Lactobacillus antri DSM 16041] Length = 197 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 5/139 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M + G I + Y+++DV GV Y ++ P R +FV +R D I Sbjct: 1 MYEYLTGTISIVAPQYIVVDVHGVGYKLLVANPYRFHEDPATA---VRVFVYQAVRDDDI 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF ++Q FM L +V G+G + A+ +L+ LV++I N + + PGI Sbjct: 58 SLFGFSDQAEKQLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNISYLTKFPGIGK 117 Query: 119 KIASRIMTELKGKAISLSS 137 K AS+I+ +LK K + +S Sbjct: 118 KTASQIVLDLKDKLAAATS 136 >gi|15827159|ref|NP_301422.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae TN] gi|221229637|ref|YP_002503053.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae Br4923] gi|730695|sp|P40832|RUVA_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767378|sp|B8ZUI1|RUVA_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|466820|gb|AAA17095.1| ruvA [Mycobacterium leprae] gi|13092707|emb|CAC29990.1| Holliday junction DNA helicase component [Mycobacterium leprae] gi|219932744|emb|CAR70575.1| Holliday junction DNA helicase component [Mycobacterium leprae Br4923] Length = 203 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 19/193 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ G+ Y + L+ L + G L +R+D + L Sbjct: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATL-RQGSQARLVTAMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F+ L SV GVG R+AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ EL+ K A L+ D + V + + ALV LG+ Sbjct: 120 AERIVLELRDKVGPVGASGLTVGTAADGNAVRG-------------SVVEALVGLGFAAK 166 Query: 176 QATTAVVSVLKKE 188 QA A VL E Sbjct: 167 QAEEATDQVLDGE 179 >gi|296111820|ref|YP_003622202.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU 11154] gi|295833352|gb|ADG41233.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU 11154] Length = 196 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 25/197 (12%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I +Y Y++I D GV Y ++ P R + ++VE +R++ Sbjct: 1 MYEYINGLITNIYPAYLVICDRSGVGYKLFAANPYRFEQNVE-----SHVYVEQIVREND 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I ++GF+ + ++ F L +V G+G + A+ +L+ AT LV ++ ++ + Q PG+ Sbjct: 56 IAMYGFIDENEKILFNKLLNVSGIGPKSALAILASDDATGLVNAVANDDASYLTQFPGVG 115 Query: 118 MKIASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 K A +I+ +LKGK +++S+ VQ N QA +A+ AL +LGY Sbjct: 116 KKTAQQIVLDLKGKLDDLAISAGVQGPTREQNTNQA--------LSDALEALESLGYSAK 167 Query: 176 QATTAVVSVLKKEKNIA 192 + V K EK +A Sbjct: 168 E-------VAKLEKTLA 177 >gi|241895534|ref|ZP_04782830.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides ATCC 33313] gi|241871112|gb|EER74863.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides ATCC 33313] Length = 196 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 3/149 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++ID+QGV Y + L T++VE +R + L Sbjct: 1 MYEYLKGTITAILPSYIVIDIQGVGYRVLVANPYAFSLNST---MTVYVEQIIRDNDQNL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D+ F L +V G+G + A+ +L+ T L+ +I + + + PGI K Sbjct: 58 YGFLTKEDKDLFQKLLNVSGIGPKSALAILANSDHTGLINAITQNDIGFLTKFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE 149 A +I+ +L+ K L+ + + V +E Sbjct: 118 AQQIVLDLQNKLSDLTLSIDDNNVSVQEE 146 >gi|30022496|ref|NP_834127.1| Holliday junction DNA helicase motor protein [Bacillus cereus ATCC 14579] gi|218234847|ref|YP_002369230.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264] gi|229048130|ref|ZP_04193701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH676] gi|33301596|sp|Q817W3|RUVA_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725434|sp|B7HE55|RUVA_BACC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29898054|gb|AAP11328.1| Holliday junction DNA helicase ruvA [Bacillus cereus ATCC 14579] gi|218162804|gb|ACK62796.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264] gi|228723233|gb|EEL74607.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH676] gi|326942202|gb|AEA18098.1| Holliday junction DNA helicase motor [Bacillus thuringiensis serovar chinensis CT-43] Length = 205 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 16/194 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A +++ +LKGK L+ VV D ++++ + A+ AL LGY Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGYA 171 Query: 174 QDQATTAVVSVLKK 187 + + + V +LK+ Sbjct: 172 EREVSRVVPELLKE 185 >gi|313847675|emb|CBY16663.1| putative holliday junction DNA helicase RuvA [Chlamydophila psittaci RD1] Length = 222 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 99/204 (48%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++++ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 16 MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 75 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 76 LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 135 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q + + PS I AL LGY + A Sbjct: 136 TAEKLMVDLKQKLADLLPLDSQITASWGPAK------PSCMEEGIQALAALGYPKSSAER 189 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + + + + A ++I+ +AL+ Sbjct: 190 MIAEAMSELPDHASIAEILPIALK 213 >gi|146296577|ref|YP_001180348.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166230531|sp|A4XJS2|RUVA_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145410153|gb|ABP67157.1| Holliday junction DNA helicase subunit RuvA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 197 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 23/212 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I +L+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDYQQLIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQ 174 K ASRI+ ELK K ++S + K + IS AL++LGY Sbjct: 119 KTASRIILELKETLKKEFKVASTSGTEEKTYEK------------LEEISLALLSLGYEI 166 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 D+ + S E ++ D I+LAL+ +S Sbjct: 167 DEINQVLSSEDFSELSLEDG---IKLALKKLS 195 >gi|295692269|ref|YP_003600879.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus crispatus ST1] gi|295030375|emb|CBL49854.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus crispatus ST1] Length = 195 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 11/168 (6%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y +Y P G+ +F+E +R I L+GF S D+ F+ L SV G+G + Sbjct: 26 YKVYSPTPFAYTQGQK---AKVFIEQVVRDTGITLYGFQSQDDKGLFLKLLSVSGIGPKS 82 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 AM +++ + L E+I K + + PG+ K AS+I+ +LKGK L V + Sbjct: 83 AMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQIVLDLKGK---LGDYVARLDRP 139 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 N E +P +A+ AL+ LGY Q + + K N AD Sbjct: 140 DNGE-----DVPPALNDALLALIALGYTQKEVDRITPKLEKVAANTAD 182 >gi|119952829|ref|YP_945038.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135] gi|254766946|sp|A1QYH6|RUVA_BORT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119861600|gb|AAX17368.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135] Length = 196 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 15/134 (11%) Query: 52 HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 H+R+D+IRLFGFL+ +R+ F L SV G+G + A+ +LS I E +++ ++ K+I+ Sbjct: 51 HLREDEIRLFGFLNVSEREVFEKLISVDGIGPKAALRILSGIKYNEFRDAVEREDVKLIS 110 Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 + GI K+A +I +L+GK + VN+ + + ++VN+G Sbjct: 111 NVKGIGNKMAGKIFLKLRGKLVK-----------VNEASSGVLKFKELE----QSIVNMG 155 Query: 172 YGQDQATTAVVSVL 185 + + A+ ++ Sbjct: 156 FDRKLVAAAIKEIM 169 >gi|289641361|ref|ZP_06473526.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca glomerata] gi|289508823|gb|EFD29757.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca glomerata] Length = 264 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 1/129 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV ++ C TL+ L ++G L +R+ ++ L Sbjct: 1 MIASVAGTVAALSPDAAVVEVGGVGLLVQCAPATLAGL-RVGQQARLVTTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LQS GVG R+A VL + + ++ ++ + ++PGI K Sbjct: 60 YGFADADERDVFETLQSASGVGPRLAQAVLGVHSPDSVRRAVAAEDLAALTKVPGIGRKG 119 Query: 121 ASRIMTELK 129 A RI+ +L+ Sbjct: 120 AQRIVLDLR 128 >gi|241889770|ref|ZP_04777068.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC 10379] gi|241863392|gb|EER67776.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC 10379] Length = 193 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 27/183 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG I + +++D G+ Y ++ P ++ + T+F+ +R+D Sbjct: 1 MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEY-----QLNEEKTVFISQQVREDSN 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q+ + + PGI Sbjct: 56 ILYGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVTYLTKFPGIGK 115 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYG 173 K A +I+ +L+GK D S N I S P+ A+N AI AL LGY Sbjct: 116 KSAQQIILDLQGKV---------DFSMTN-----ISSAPT-AVNNYLSDAILALEALGYS 160 Query: 174 QDQ 176 + + Sbjct: 161 KKE 163 >gi|262341131|ref|YP_003283986.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272468|gb|ACY40376.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 196 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 11/137 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL----GKIGDFCTLFVETHM--R 54 MI ++G + + Y++ID GV Y I+ + T S L GK D C + T++ + Sbjct: 1 MITHLRGKLIEKNQSYLIIDCHGVGYHIHISLYTHSSLLEEEGK--DIC---IHTYLFIK 55 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +Q L+GF ++R+ F L SV G+G A+ +LS +T E+ +SI ++ K ++ Sbjct: 56 DNQHVLYGFFDKIERKIFSYLISVNGIGPSSAIMLLSSLTPYEIEKSISKEDIKAFDKVK 115 Query: 115 GISMKIASRIMTELKGK 131 GI K A RI+ ELK K Sbjct: 116 GIGTKTAQRIIIELKDK 132 >gi|315453042|ref|YP_004073312.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] gi|315132094|emb|CBY82722.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] Length = 181 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 22/201 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G++ + + ++V+GV Y + + T S L + G L+ ++ L Sbjct: 1 MIVGLIGHVHSIEPTLIALNVRGVVYGVQVSLHTSSLLQE-GQEVHLYTSLISKEGDQSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +R F+ L + GVG ++A+ +LS T E + Q++K + ++PG+ K+ Sbjct: 60 FGFLELEERALFVRLIKISGVGPKIALAILSVYTPLEFATLLETQHTKALQKVPGVGSKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG--QDQAT 178 AS+IM +L+G S QD P++ I A+ AL +LG+ + Q Sbjct: 120 ASKIMFDLEGYLPS----AHQD--------------PAY-IQAVQALESLGFKSLEVQKV 160 Query: 179 TAVVSVLKKEKNIADDSQIIR 199 A + L E+ I + Q +R Sbjct: 161 CADLKGLSTEEMIKEALQKLR 181 >gi|157413283|ref|YP_001484149.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9215] gi|167012662|sp|A8G4N2|RUVA_PROM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157387858|gb|ABV50563.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9215] Length = 225 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 74/122 (60%), Gaps = 9/122 (7%) Query: 16 YVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 +VLI+ QG+ Y I + ++T K TL+++ ++D LFGF S + Sbjct: 20 FVLINCQGLGYEIQILESFFLKLKTNQISNKK---ITLWIKHIKKEDSDLLFGFTSKDQK 76 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 +F+ + SV+GVG+++ M +L++ + +E++++I Q+ K+I IPGI K++ R++ ELK Sbjct: 77 FFFIEILSVRGVGSQIGMSILNKFSISEIIKAIKTQDKKLICSIPGIGQKMSDRLILELK 136 Query: 130 GK 131 K Sbjct: 137 SK 138 >gi|167770542|ref|ZP_02442595.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM 17241] gi|167667137|gb|EDS11267.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM 17241] Length = 172 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 56/100 (56%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + TLSCL +G TL+ ++R+D + L+GF + + F +L V GVG + A+ +LS Sbjct: 4 LTTLSCLPPVGGEATLYTHLNVREDALDLYGFYTQAELNAFKMLIGVSGVGPKSALAILS 63 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 +T +L I +SK + PGI K A RI+ E K + Sbjct: 64 DMTPDKLALCIAAGDSKSLRAAPGIGPKAAQRIILECKDR 103 >gi|315282450|ref|ZP_07870861.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120] gi|313613902|gb|EFR87635.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120] Length = 201 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTDAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVFTAPGNDIVAGLSPQLEEAVLALEALGYSTRE-LKK 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ L KE ++ D+ I+LAL+ ++ Sbjct: 176 VIPKLAKETDLTSDA-YIKLALQLMT 200 >gi|145594353|ref|YP_001158650.1| Holliday junction DNA helicase RuvA [Salinispora tropica CNB-440] gi|189045768|sp|A4X5X2|RUVA_SALTO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145303690|gb|ABP54272.1| Holliday junction DNA helicase subunit RuvA [Salinispora tropica CNB-440] Length = 200 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 10/184 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +++V GV + C T++ L ++G L +R+D + L Sbjct: 1 MIASVRGVVTATGPDHAVLEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D + F LLQ+ GVG R+A VL+ + +I ++ + ++PGI K Sbjct: 60 YGFADDDAKALFELLQTASGVGPRLAQAVLAVHPPEAVRAAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ ALV LG+ QA A Sbjct: 120 AERLVLELRDRIGPVP---------VGADSAAGVTTGAWPEQVRQALVGLGWTAAQADQA 170 Query: 181 VVSV 184 V +V Sbjct: 171 VTAV 174 >gi|94987628|ref|YP_595561.1| Holliday junction DNA helicase RuvA [Lawsonia intracellularis PHE/MN1-00] gi|123262079|sp|Q1MP37|RUVA_LAWIP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94731877|emb|CAJ55240.1| Holliday junction resolvasome, DNA-binding subunit [Lawsonia intracellularis PHE/MN1-00] Length = 199 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 10/200 (5%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G I E V+ G+ Y ++ T S L G+ ++ +R+D Sbjct: 1 MIAYLEGYIAEFGETSCVVATSSGIGYEVFLTTPTRSTLPNKGEQVRFYICHIVREDIQE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F++L S+ VGAR A+ +LS +L + +I ++ + ++ GI K Sbjct: 61 LFGFETWDERQTFIVLTSISKVGARTALNMLSTFRPNDLRQCVIEEDIFALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K +Q D + I S + ++ L LGY +++++ Sbjct: 121 TAQHIFLELKYK-------LQIDGNSTTSSSPSIGQ--SLFYDILTGLQGLGYTKEESSV 171 Query: 180 AVVSVLKKEKNIADDSQIIR 199 + SVL+ E ++ S + R Sbjct: 172 VIKSVLQHEPDLDVGSALRR 191 >gi|283456064|ref|YP_003360628.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1] gi|283102698|gb|ADB09804.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1] Length = 168 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 19/172 (11%) Query: 42 GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101 G ++ ++ QD I LFGFL+ ++ F+ LQ V G+G +VA+ +LS + L + Sbjct: 4 GQEVKVYTSLNVSQDAITLFGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHA 63 Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SF 159 + ++ +A+ PG+ K A +I+ ELKG +I LS + + A + S P + Sbjct: 64 VADGDATALAKAPGLGKKGAQKIILELKG-SIDLSQI---------ETAASVISRPEDTG 113 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIA------DDSQIIRLALRAI 205 + + L++LG+ Q A AV V + +IA D ++++LAL ++ Sbjct: 114 SEQVVEGLISLGWRQQDALHAVQEVC-RSNDIATPLSNEDVPRVLKLALTSL 164 >gi|317051309|ref|YP_004112425.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5] gi|316946393|gb|ADU65869.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5] Length = 202 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 12/180 (6%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI + G + L +D I GV Y + P + L K+ ++ +++D I Sbjct: 1 MISLVSGTVHSLTQDRATILTSGGVGYELSIPASLATSL-KVDQTVSIQTWMGVKEDAIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S ++ F+LL V G+GA++A+ + + +L +I + + I +IPG+ K Sbjct: 60 LYGFSSSEEKALFLLLMKVSGIGAKIALAAVGTLNTQQLGNAIAMGDIATIQRIPGVGKK 119 Query: 120 IASRIMTELKGK---AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +A +I ELK K A + SS Q + PS +A+ L+ LG +++ Sbjct: 120 VAEKIALELKDKVTPAAATSSAPQAFTGTTS-------GTPSVFADAVQGLIALGLRREE 172 >gi|256852230|ref|ZP_05557616.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 27-2-CHN] gi|260661738|ref|ZP_05862649.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 115-3-CHN] gi|282932642|ref|ZP_06338056.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] gi|297205604|ref|ZP_06923000.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus jensenii JV-V16] gi|256615276|gb|EEU20467.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 27-2-CHN] gi|260547485|gb|EEX23464.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 115-3-CHN] gi|281303216|gb|EFA95404.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] gi|297150182|gb|EFH30479.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus jensenii JV-V16] Length = 193 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 14/194 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++ +DV G + I+ + S G ++VE +R + I L Sbjct: 1 MYEYLEGTVTIITPSFIALDVGGQGFKIFSA-KPYSY--SEGQRIRVYVEQVVRDNDISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + AM +++ ++ L ++I + + PG+ K Sbjct: 58 YGFESSDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S V+QD+ + QA +A+ AL LGY + + Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166 Query: 181 VVSVLKKEKNIADD 194 + K + AD+ Sbjct: 167 KPKLEKSSFDTADE 180 >gi|314933806|ref|ZP_07841171.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87] gi|313653956|gb|EFS17713.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87] Length = 200 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 24/197 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP--IRTLSCLGK-IGDFCTLFVETHMRQDQ 57 M +KG + L+ +V+++ G+ Y I P R L + + F +L V R+D Sbjct: 1 MYAYVKGTLTQLFPTHVVVETSGIGYEIQTPNSYRFQKYLNRDVQIFTSLIV----REDA 56 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF+S+ ++ F L V G+G + A+ +L+ + + +I +N + Q PGI Sbjct: 57 QLLYGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNGVKRAIENENDAYLTQFPGIG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCV------NKEQAHICSMPSFAINAISALVNLG 171 K A +I+ +LKGK ++ ++D + N EQ+ + A+ AL LG Sbjct: 117 KKTARQIVLDLKGKV----TITEEDSESLLKVDVNNDEQSQVVK------EAMLALEALG 166 Query: 172 YGQDQATTAVVSVLKKE 188 Y + + + V VL K+ Sbjct: 167 YSK-RELSKVEKVLNKQ 182 >gi|218899590|ref|YP_002448001.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842] gi|228902949|ref|ZP_04067090.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 4222] gi|226725433|sp|B7IIT3|RUVA_BACC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218542616|gb|ACK95010.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842] gi|228856733|gb|EEN01252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 4222] Length = 205 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 16/194 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A +++ +LKGK L+ VV D ++++ + A+ AL LGY Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDTERFDEKKGTSAELD----EALEALRALGYA 171 Query: 174 QDQATTAVVSVLKK 187 + + + V +LK+ Sbjct: 172 EREVSRVVPELLKE 185 >gi|297566125|ref|YP_003685097.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946] gi|296850574|gb|ADH63589.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946] Length = 193 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ +KG E+ V++ V G ++CP TL+ L + G+ L + +R+D + L Sbjct: 1 MVRYLKGTALRKTENSVILLVGGFGLEVFCPTTTLTHLPEEGEIA-LHTKLVVREDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F +L V GVG +V + +LS ++ L ++ + +++ G+ K+ Sbjct: 60 YGFADQRSLELFEMLLGVSGVGPKVGLNLLSSLSPALLARALADGDIRLLTGAQGVGRKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+GK V M E I P A ALV LG+ ++Q +A Sbjct: 120 AERIALELRGK------VPPHLMG----EAGPILRRPQTE-EAELALVTLGFRENQVRSA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++++ A +IIRLAL+A+ Sbjct: 169 VAQIVQQNPE-ASTQEIIRLALKAL 192 >gi|169836412|ref|ZP_02869600.1| Holliday junction DNA helicase, subunit A [candidate division TM7 single-cell isolate TM7a] Length = 192 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 8/184 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + ++IDV G+ Y ++ + + +G+ + H+R+ L Sbjct: 1 MIAHVRGKISEKFNGSIIIDVNGLGYELFVSVVDFDLV-NLGESVKFYTYHHVREQSEEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F +L SVQGVG + A+ +LS + +I N+ I + G+ K Sbjct: 60 FGFSTLSAKKIFEMLISVQGVGPKAALAILSLGNVETVRNAIANSNAGFIQKASGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L K + L + + + Q + A+ AL+ LGY A+ A Sbjct: 120 ADRVVVDLHDK-VGLPTKYENSNEIIENNQLNSSD------EAVEALMALGYTLADASEA 172 Query: 181 VVSV 184 + ++ Sbjct: 173 LKNI 176 >gi|329942438|ref|ZP_08291248.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10] gi|332287079|ref|YP_004421980.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|325507386|gb|ADZ19024.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|328815348|gb|EGF85336.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10] gi|328914313|gb|AEB55146.1| Holliday junction DNA helicase RuvA [Chlamydophila psittaci 6BC] Length = 207 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 99/204 (48%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++++ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 1 MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 61 LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q + + PS I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLADLLPLDSQITASWGPAK------PSCMEEGIQALAALGYPKSSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + + + + A ++I+ +AL+ Sbjct: 175 MIAEAMSELPDHASIAEILPIALK 198 >gi|116327800|ref|YP_797520.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331541|ref|YP_801259.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280714|sp|Q04RG9|RUVA_LEPBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122284404|sp|Q053A8|RUVA_LEPBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116120544|gb|ABJ78587.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125230|gb|ABJ76501.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 212 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 21/219 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTL-FVETH-MRQDQI 58 MI +KG ++ L Y I+ G+ Y + +T L + + F H M + Sbjct: 1 MISGLKGTLKKLEVGYAHIETGGITYEVTISFKTYLELKSLPSHNEVQFQIFHAMNERGQ 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +LFGFL++ D+++F +++ +QG+G A+ +LS +A EL +K + +IP + Sbjct: 61 KLFGFLTEQDKEFFKVIKGLQGIGELTALKILSFFSAEELYRIAQSGEAKELEKIPKVKG 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------------AISA 166 K + +I E+K L +S +KE + S+ SF+ AI Sbjct: 121 KTSEKIFFEVKQNLKKLELF----LSGTSKEPS--ISLSSFSETPEEAALSRKREIAILG 174 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LV LG+ + A+ V +LK + D +IIR L+++ Sbjct: 175 LVQLGFEEKTASKEVDKILKS-SSPTDPGEIIREILKSL 212 >gi|218905615|ref|YP_002453449.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820] gi|218536299|gb|ACK88697.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820] Length = 541 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 16/194 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A +++ +LKGK L+ VV D ++++ + A+ AL LGY Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDEERFDEKKGSSAELD----EALEALRALGYA 171 Query: 174 QDQATTAVVSVLKK 187 + + + V +LK+ Sbjct: 172 EREVSRVVPELLKE 185 >gi|30264491|ref|NP_846868.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames] gi|42783552|ref|NP_980799.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987] gi|47566611|ref|ZP_00237433.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241] gi|47778316|ref|YP_021298.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames Ancestor'] gi|49187311|ref|YP_030563.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Sterne] gi|49481508|ref|YP_038471.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141085|ref|YP_085744.1| Holliday junction DNA helicase motor protein [Bacillus cereus E33L] gi|65321787|ref|ZP_00394746.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Bacillus anthracis str. A2012] gi|118479576|ref|YP_896727.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis str. Al Hakam] gi|165871987|ref|ZP_02216628.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488] gi|167636186|ref|ZP_02394490.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442] gi|167640739|ref|ZP_02398999.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193] gi|170688710|ref|ZP_02879915.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465] gi|170709117|ref|ZP_02899544.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389] gi|177653948|ref|ZP_02935989.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174] gi|190567070|ref|ZP_03019986.1| Holliday junction DNA helicase RuvA [Bacillus anthracis Tsiankovskii-I] gi|196034433|ref|ZP_03101842.1| Holliday junction DNA helicase RuvA [Bacillus cereus W] gi|196039270|ref|ZP_03106576.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99] gi|196044806|ref|ZP_03112040.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108] gi|206976012|ref|ZP_03236922.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97] gi|217961912|ref|YP_002340482.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187] gi|225866402|ref|YP_002751780.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102] gi|227817199|ref|YP_002817208.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC 684] gi|229141160|ref|ZP_04269701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST26] gi|229602821|ref|YP_002868707.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248] gi|254684176|ref|ZP_05148036.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CNEVA-9066] gi|254724653|ref|ZP_05186436.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A1055] gi|254736523|ref|ZP_05194229.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Western North America USA6153] gi|254741561|ref|ZP_05199248.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Kruger B] gi|254751340|ref|ZP_05203377.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Vollum] gi|254757672|ref|ZP_05209699.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Australia 94] gi|301055929|ref|YP_003794140.1| holliday junction DNA helicase motor protein [Bacillus anthracis CI] gi|33301601|sp|Q81LG8|RUVA_BACAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81394735|sp|Q6HDA5|RUVA_BACHK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81409055|sp|Q730B1|RUVA_BACC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81686087|sp|Q634C3|RUVA_BACCZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230517|sp|A0RJ27|RUVA_BACAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725435|sp|B7HQI0|RUVA_BACC7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766941|sp|C3P9A8|RUVA_BACAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766942|sp|C3L6V0|RUVA_BACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766943|sp|C1ESW5|RUVA_BACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|30259149|gb|AAP28354.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames] gi|42739481|gb|AAS43407.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987] gi|47552021|gb|AAT33773.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames Ancestor'] gi|47556641|gb|EAL14973.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241] gi|49181238|gb|AAT56614.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Sterne] gi|49333064|gb|AAT63710.1| holliday junction DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974554|gb|AAU16104.1| Holliday junction DNA helicase, subunit A [Bacillus cereus E33L] gi|118418801|gb|ABK87220.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis str. Al Hakam] gi|164712277|gb|EDR17813.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488] gi|167511311|gb|EDR86697.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193] gi|167528407|gb|EDR91175.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442] gi|170125969|gb|EDS94869.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389] gi|170667396|gb|EDT18154.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465] gi|172081003|gb|EDT66081.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174] gi|190562061|gb|EDV16030.1| Holliday junction DNA helicase RuvA [Bacillus anthracis Tsiankovskii-I] gi|195992975|gb|EDX56934.1| Holliday junction DNA helicase RuvA [Bacillus cereus W] gi|196024294|gb|EDX62967.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108] gi|196029897|gb|EDX68498.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99] gi|206745764|gb|EDZ57161.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97] gi|217066649|gb|ACJ80899.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187] gi|225789206|gb|ACO29423.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102] gi|227004034|gb|ACP13777.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC 684] gi|228642323|gb|EEK98613.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST26] gi|229267229|gb|ACQ48866.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248] gi|300378098|gb|ADK07002.1| holliday junction DNA helicase motor protein [Bacillus cereus biovar anthracis str. CI] gi|324328324|gb|ADY23584.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 205 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 16/194 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A +++ +LKGK L+ VV D ++++ + A+ AL LGY Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDEERFDEKKGSSAELD----EALEALRALGYA 171 Query: 174 QDQATTAVVSVLKK 187 + + + V +LK+ Sbjct: 172 EREVSRVVPELLKE 185 >gi|206969835|ref|ZP_03230789.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134] gi|228954705|ref|ZP_04116728.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229180697|ref|ZP_04308037.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 172560W] gi|206735523|gb|EDZ52691.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134] gi|228602842|gb|EEK60323.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 172560W] gi|228805032|gb|EEM51628.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 205 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 94/194 (48%), Gaps = 16/194 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A +++ +LKGK L+ VV D ++ + + A+ AL LGY Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDTERFDENKGSSAELD----EALEALRALGYA 171 Query: 174 QDQATTAVVSVLKK 187 + + + V +LK+ Sbjct: 172 EREVSRVVPELLKE 185 >gi|242310193|ref|ZP_04809348.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pullorum MIT 98-5489] gi|239523490|gb|EEQ63356.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pullorum MIT 98-5489] Length = 192 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 MI ++G I + I GV Y ++ ++T + + + G+ TL +R+D Sbjct: 1 MIIALQGEIFFKEPTRIAIKCAGVIYEVFISLQTSNQITQTKGENLTLLTTHIIREDAQI 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL + +++ F L + GVG +VAM +LS T + + + K + ++PGI K Sbjct: 61 LFGFLENNEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL G ++ LS Q + + H + AL +LGY D Sbjct: 121 SAGRILVELSGWSLELS---QTNQTIKEDSTLH---------QVVLALESLGYKNDIIQK 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + K E Q+++ AL+ I Sbjct: 169 AIKGLEKDEV-----GQMVKAALKKI 189 >gi|259046890|ref|ZP_05737291.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC 49175] gi|259036513|gb|EEW37768.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC 49175] Length = 195 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 14/174 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M + G + + ++IDV GV Y + P R L K + V+ +R+D I Sbjct: 1 MYEYLNGELAHILPTAIVIDVHGVGYQVVFANPYRLQDSLKKQ---IKVLVQQVVREDSI 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF+S +R+ F L SV G+G + AM +L+ V ++ N + + PG+ Sbjct: 58 TLYGFISSEERELFQRLISVSGIGPKSAMSILANDDTEGFVNAVESGNVTYLTKFPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 K A +I+ +LKGK +L + + V+ QA + A AL+ LGY Sbjct: 118 KTAQQIILDLKGKFEALPE--ETTKAVVSTNQATLE-------EAKEALLGLGY 162 >gi|81427980|ref|YP_394979.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp. sakei 23K] gi|90135183|sp|Q38YR0|RUVA_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78609621|emb|CAI54667.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp. sakei 23K] Length = 203 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 15/178 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M +KG + + YV+++VQG+ Y + P R + ++ +FV +R I Sbjct: 1 MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEV---VQIFVHQAVRDTDI 57 Query: 59 RLFGFLSDLD-RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 LFGF DLD +Q F L SV G+G + A+ +L+ + L+++I+ + + + PG+ Sbjct: 58 TLFGFY-DLDEKQLFQKLISVSGIGPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM---PSFAINAISALVNLGY 172 K A +I +LKGK L +Q + V + + S P + +A++AL LGY Sbjct: 117 KKTAQQIALDLKGKLGDL----EQSATLVGQTAIDLGSQGDSPELS-DALAALSALGY 169 >gi|163942171|ref|YP_001647055.1| Holliday junction DNA helicase motor protein [Bacillus weihenstephanensis KBAB4] gi|229560002|sp|A9VIP7|RUVA_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163864368|gb|ABY45427.1| Holliday junction DNA helicase RuvA [Bacillus weihenstephanensis KBAB4] Length = 205 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 94/190 (49%), Gaps = 8/190 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQA 177 A +++ +LKGK L+ VV + + + ++ A+ AL LGY + + Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREV 175 Query: 178 TTAVVSVLKK 187 + V +LK+ Sbjct: 176 SRVVPELLKE 185 >gi|307153472|ref|YP_003888856.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822] gi|306983700|gb|ADN15581.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822] Length = 209 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQIRLFGFLSDLDRQWFML 74 ++++V + Y I P R L + D T+ + TH+ R+DQ L+GF + +R F Sbjct: 22 LILEVNQIGYEIQIPSRLARKL-TLDDDQTIQIFTHLQIREDQQILYGFATSEERDLFRQ 80 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L SV GVGA+ A+ ++ + ELV +I+ N + +A+ PGI K A RI+ ELK K Sbjct: 81 LISVSGVGAQSAIALIDTLGLEELVRAIMSNNGRTLAKSPGIGPKTAERILLELKTK 137 >gi|317495143|ref|ZP_07953513.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424] gi|316914565|gb|EFV36041.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424] Length = 192 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 18/196 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG I + ++ID G+ Y I P ++ + +++ +R+D Sbjct: 1 MYAYIKGKISEINPTNIVIDNNGIGYEITVANPYEY-----QLNEEKQIYISQQVREDSN 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFL+ ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q+ + + PGI Sbjct: 56 TLYGFLTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDVNYLTKFPGIGK 115 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A +I+ +L+GK I ++ + S N + +A+ AL LGY + Sbjct: 116 KSAQQIILDLQGK-IDFNTAANKTESLAN----------LYIKDALLALEALGYSTKELA 164 Query: 179 TAVVSVLKKEKNIADD 194 + K E + DD Sbjct: 165 KIESRLAKFEFSAVDD 180 >gi|225847962|ref|YP_002728125.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644479|gb|ACN99529.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense Az-Fu1] Length = 181 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 34/210 (16%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG I + ++ ++++ G I P K D T++ +++++IR+ Sbjct: 1 MLEFIKGKIVKVDKNKIIVEKDGFGIKINVPDSE-----KFSDEDTVYTILKVKEEEIRV 55 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQIPGISM 118 GF + +++ F L + GVG + A+ +L + E ++ IL S V + ++ GI Sbjct: 56 IGFKTQEEKELFNKLTQIHGVGEKHALAILGHFSIDEFID--ILDQSDVDSLTKVQGIGK 113 Query: 119 KIASRIMTELKGKA-ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A RI+ ELKGK S +S++Q + + L NLG+ ++Q+ Sbjct: 114 KTAQRIIVELKGKVDFSENSLIQ---------------------DFVKTLTNLGFDKEQS 152 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207 V +LK++ N+ + I++ A+ +S Sbjct: 153 YKVVRKLLKEDNNVEN---ILKKAISTLSS 179 >gi|328465569|gb|EGF36798.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 1816] Length = 175 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 4/172 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGY 168 >gi|184154991|ref|YP_001843331.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO 3956] gi|227514529|ref|ZP_03944578.1| crossover junction endoribonuclease subunit A [Lactobacillus fermentum ATCC 14931] gi|260663386|ref|ZP_05864277.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum 28-3-CHN] gi|229560093|sp|B2GB19|RUVA_LACF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183226335|dbj|BAG26851.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO 3956] gi|227087086|gb|EEI22398.1| crossover junction endoribonuclease subunit A [Lactobacillus fermentum ATCC 14931] gi|260552238|gb|EEX25290.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum 28-3-CHN] Length = 200 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 1/145 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + D++++DV GV Y + + +F+ +++D I L Sbjct: 1 MFEYLTGLITMVSPDFIVVDVNGVGYRVAV-ANPYAYQEDDQQAVQVFIYQAVKEDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G + A+ +L+ L+++I + K +++ PGI K Sbjct: 60 FGFATQAEKRLFTQLIGVSGIGPKSALAILATPDHQGLIDAIQNGDDKYLSKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC 145 ASRI+ ELK K +++ VQ D + Sbjct: 120 ASRIIIELKDKVVAVQDEVQLDFTA 144 >gi|331002346|ref|ZP_08325864.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410162|gb|EGG89596.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107 str. F0167] Length = 196 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 26/213 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58 MI IKG + D ++++ G+ Y ++ R + + K + + + T++R D Sbjct: 1 MIAYIKGIVTEKNTDSIIVECSGLGYEVFTCGRDIQSVSKTDE---ILIYTYLRISDDAH 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFL+ D F L + GVG + A+ ++S + + +L +I+ + K I+ GI Sbjct: 58 TLYGFLNKDDLLMFKKLLGISGVGPKAALSIMSTLGSFDLKMAIVSDDYKAISAAQGIGQ 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDM-----SCVNKEQAHICSMPSFAINAISALVNLGYG 173 KIA RI+ +LK K + L S++ D+ S V E A AL++LGY Sbjct: 118 KIAKRIILDLKEK-VDLGSILVSDIDNTADSTVQTETAQ-------------ALISLGYS 163 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A + S+ K+ + +D ++++AL+ ++ Sbjct: 164 SSEAYKVLKSMDIKDSDKVED--VLKIALKKMA 194 >gi|229013638|ref|ZP_04170769.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides DSM 2048] gi|229169164|ref|ZP_04296879.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH621] gi|228614392|gb|EEK71502.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH621] gi|228747697|gb|EEL97569.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides DSM 2048] Length = 212 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 8/186 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF Sbjct: 12 VTGYVEYVGPEYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFK 69 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A ++ Sbjct: 70 TREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQM 129 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQATTAV 181 + +LKGK L+ VV + + + ++ A+ AL LGY + + + V Sbjct: 130 ILDLKGK---LADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVV 186 Query: 182 VSVLKK 187 +LK+ Sbjct: 187 PELLKE 192 >gi|237752874|ref|ZP_04583354.1| holliday junction DNA helicase motor protein [Helicobacter winghamensis ATCC BAA-430] gi|229375141|gb|EEO25232.1| holliday junction DNA helicase motor protein [Helicobacter winghamensis ATCC BAA-430] Length = 193 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 8/170 (4%) Query: 23 GVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y ++ ++T + IG+ L +R+D LFGFL L++ F L + GV Sbjct: 23 GVVYEVFISLQTSQQIQANIGEKLALHTTQIIREDAQMLFGFLELLEKTLFERLIKINGV 82 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141 G +VAM +LS T + + + K + ++PGI K A RI+ EL G ++ L VQ Sbjct: 83 GPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPKSAGRILVELSGWSLDL---VQG 139 Query: 142 DMSCVNKE---QAHICSMPSFAI-NAISALVNLGYGQDQATTAVVSVLKK 187 + V K+ Q I ++ S N + A V G D+ + V + LK+ Sbjct: 140 ESLNVKKDSNLQQVILALESLGYKNDVIARVTKGLENDEVSAMVKAALKR 189 >gi|254525561|ref|ZP_05137613.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus marinus str. MIT 9202] gi|221536985|gb|EEE39438.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus marinus str. MIT 9202] Length = 225 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 82/141 (58%), Gaps = 13/141 (9%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVE 50 MI I G + +++ +VLI+ QG+ Y I + ++T K TL+++ Sbjct: 1 MISWINGELVEIWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKN---ITLWIK 57 Query: 51 THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110 ++D LFGF S + +F+ + SV+G+G+++ M +L++ + +E++++I Q+ K+I Sbjct: 58 YIKKEDSDLLFGFASKDQKFFFIEILSVRGIGSQIGMSILNKFSISEIIKAIKTQDKKLI 117 Query: 111 AQIPGISMKIASRIMTELKGK 131 +PGI K++ R++ ELK K Sbjct: 118 CSVPGIGQKMSDRLILELKSK 138 >gi|313890377|ref|ZP_07824008.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus SPIN 20026] gi|313121220|gb|EFR44328.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus SPIN 20026] Length = 197 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++V G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGQLTKITAKYIVVEVNGLGYIIYVA-NPYSFTDSVNQNVTVYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + QQ S + H AI AL+ LGY Sbjct: 120 AQQMILDLAGKFVDNPEPGQQ-QSQAKRNSNHQLD------EAIEALLALGY 164 >gi|29839888|ref|NP_828994.1| Holliday junction DNA helicase motor protein [Chlamydophila caviae GPIC] gi|33301629|sp|Q824M5|RUVA_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29834235|gb|AAP04872.1| Holliday junction DNA helicase RuvA [Chlamydophila caviae GPIC] Length = 207 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 101/204 (49%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I+ P R L L G++ ++ T +R+ + Sbjct: 1 MYDYIRGILTYMSSGTLVIECQGLGFNIFAPDRWLIELSGQLHREVVVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F +L S GVG + + +L+ + ++L ++ + IA +PGI K Sbjct: 61 LYGFSSRRERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDVRAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L ++ D + ++ PS I AL LGY + A Sbjct: 121 TAEKLMVDLKQK---LPDLLPLDSKAIASWES---VKPSCMDEGIQALAALGYSKPSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + + + A ++I+ +AL+ Sbjct: 175 MIAEAMSELPENASLAEILPIALK 198 >gi|6729740|pdb|1BVS|A Chain A, Ruva Complexed To A Holliday Junction. gi|6729741|pdb|1BVS|B Chain B, Ruva Complexed To A Holliday Junction. gi|6729742|pdb|1BVS|C Chain C, Ruva Complexed To A Holliday Junction. gi|6729743|pdb|1BVS|D Chain D, Ruva Complexed To A Holliday Junction. gi|6729744|pdb|1BVS|E Chain E, Ruva Complexed To A Holliday Junction. gi|6729745|pdb|1BVS|F Chain F, Ruva Complexed To A Holliday Junction. gi|6729746|pdb|1BVS|G Chain G, Ruva Complexed To A Holliday Junction. gi|6729747|pdb|1BVS|H Chain H, Ruva Complexed To A Holliday Junction Length = 203 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 19/193 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ G+ Y + L+ L + G L +R+D + L Sbjct: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLNQ-GSQARLVTAMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F+ L SV GVG R+AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRG 119 Query: 121 ASRIMTELKGK-----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ EL K A L+ D + V + + ALV LG+ Sbjct: 120 AERIVLELADKVGPVGASGLTVGTAADGNAVRG-------------SVVEALVGLGFAAK 166 Query: 176 QATTAVVSVLKKE 188 QA A VL E Sbjct: 167 QAEEATDQVLDGE 179 >gi|145628663|ref|ZP_01784463.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] gi|144979133|gb|EDJ88819.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] Length = 124 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKK 119 >gi|239939964|ref|ZP_04691901.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL 15998] gi|239986448|ref|ZP_04707112.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL 11379] gi|291443395|ref|ZP_06582785.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces roseosporus NRRL 15998] gi|291346342|gb|EFE73246.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces roseosporus NRRL 15998] Length = 208 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGKEARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFRDDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGK 131 A +++ ELK + Sbjct: 120 AQKLLLELKDR 130 >gi|269219375|ref|ZP_06163229.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211168|gb|EEZ77508.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848 str. F0332] Length = 196 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 105/205 (51%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G++ + +I+ GV Y + TL+ L ++G FV T + R+D + Sbjct: 1 MIAALRGSVLSVEPTAAVIEAGGVGYAVQATPATLAGL-RVGQEA--FVHTSLVVREDSM 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF +R+ F +LQ+V GVG ++A+ +L+ +T L +++ + + ++ G+ Sbjct: 58 TLFGFADADEREVFDVLQTVSGVGPKLALTILATLTPDRLRQAVANADIAALTRVSGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ E+ K L D+ S + + + ++ALV LG+ + A Sbjct: 118 KGAQRLVLEIGAK---LGPRRGGDLEA--------PSSNARSGDVVAALVGLGFSERDAE 166 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 +A S ++K A+ +++R +L+ Sbjct: 167 SA-FSQVEKATPEAEVPELLRASLK 190 >gi|87302215|ref|ZP_01085040.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 5701] gi|87283140|gb|EAQ75096.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 5701] Length = 221 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G++ ++ +L+ GV Y + R L G L+ +R D Sbjct: 1 MIGWLQGHVAEPWQQGNRCGLLLACAGVGYEVQLTRRHWELLPPAGSPLCLYTHQSIRDD 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF + +R F LL +V GVG ++A+ +L + ELV +I+ + + + + PG+ Sbjct: 61 GWTLFGFGARHERDLFRLLVAVSGVGPQMALALLGTMPCEELVRAIVQADLRRLCRAPGV 120 Query: 117 SMKIASRIMTELKGK 131 + A R+ EL+GK Sbjct: 121 GKRTAERLAVELRGK 135 >gi|268317861|ref|YP_003291580.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252] gi|262335395|gb|ACY49192.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252] Length = 200 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 65/111 (58%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++DV G+ Y + P T L ++G L ++R+D + LFGF ++ +R F +L Sbjct: 17 VVVDVHGLGYRLLIPTSTYEVLPEVGAPVHLLTHYYVREDAVLLFGFATEAERALFEVLL 76 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 V GVG R+A+ LS ++ ++ E++ + + + +IPG+ ++A R++ E Sbjct: 77 GVSGVGPRLALAALSALSPAQIHEAVTTGDVQTLKRIPGVGQRLAERLIVE 127 >gi|295396081|ref|ZP_06806264.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium mcbrellneri ATCC 49030] gi|294971022|gb|EFG46914.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium mcbrellneri ATCC 49030] Length = 194 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQI 58 MI ++G + + + + + GV ++ T + G++ G L E +R+D + Sbjct: 1 MIRYLEGTVHTVSANSLTVVTSGVGREVFV---TPAVAGRVRTGSEVALHTELIVREDAL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + + + F L GVG ++A+ +LS ++ ++ +I KV+ +PG+ Sbjct: 58 TLYGFDTPSELKLFSTLLGANGVGPKLALAILSVLSPDQVYGAISDNTPKVLTAVPGVGP 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+A++++ +L+GK + S+V + E + ALV LG+ + A Sbjct: 118 KVAAKLIVDLQGKVPATSAVPSSGAGPASAE-------------VVQALVGLGWKEATAI 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 AV +V E A + +++ ALR Sbjct: 165 KAVEAV-APEMGQASVADMLKAALR 188 >gi|218244912|ref|YP_002370283.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801] gi|257057937|ref|YP_003135825.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802] gi|226725438|sp|B7JZG7|RUVA_CYAP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218165390|gb|ACK64127.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801] gi|256588103|gb|ACU98989.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802] Length = 210 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 24/208 (11%) Query: 1 MIGKIKGN-IEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM-- 53 MI +KGN IE L ++++V V Y + P R L + TL V TH+ Sbjct: 1 MISYLKGNPIETLKNTQNRILLILEVNQVGYEMQIPSRFARELSQ-NPRETLQVFTHLQV 59 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 + +Q L+GF + +R+ F L SV G+GA++A+ ++ + ELV++I+ N + ++Q Sbjct: 60 KDEQPILYGFATAAERELFRQLVSVSGIGAQLAIALIDTLGLEELVQAIVNGNIRTLSQT 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLG 171 PG+ K A RI ELK K + Q V ++PS + + L+ LG Sbjct: 120 PGVGQKTAERIALELKTK-------LSQWRKLVGITLPSTSAIPSLEVLEDVEMTLLALG 172 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIR 199 Y ++ A+ + ++ D+Q+++ Sbjct: 173 YTNEEINKAIST-------LSQDNQMLK 193 >gi|228993160|ref|ZP_04153082.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus pseudomycoides DSM 12442] gi|228999210|ref|ZP_04158791.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock3-17] gi|229006757|ref|ZP_04164391.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock1-4] gi|228754618|gb|EEM04029.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock1-4] gi|228760555|gb|EEM09520.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock3-17] gi|228766619|gb|EEM15260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus pseudomycoides DSM 12442] Length = 212 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 95/190 (50%), Gaps = 16/190 (8%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 + G +E + +YV++D G+ Y I+ P + ++ ++R+D + L+GF Sbjct: 12 VTGYVEYVGPEYVVLDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFK 69 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A ++ Sbjct: 70 TREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQM 129 Query: 125 MTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 + +LKGK L+ VV D+ ++++ + A+ AL LGY + + Sbjct: 130 ILDLKGK---LADVVPDAFVDLFSDVERFDEKKGSSAELD----EALEALRALGYAEREV 182 Query: 178 TTAVVSVLKK 187 + V +LK+ Sbjct: 183 SRVVPELLKE 192 >gi|261368084|ref|ZP_05980967.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM 15176] gi|282570074|gb|EFB75609.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM 15176] Length = 201 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 18/197 (9%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 D +I GV Y + P T L G T++ ++ ++ + L+GF ++ R F + Sbjct: 15 DTAVISCGGVGYAVQIPATTGEALPAPGQEGTVYTVMNVSENDVSLYGFATEEQRDCFKM 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK---GK 131 L +V GVG + + +LS ++ ++ + + K + G+ K+A RI ELK GK Sbjct: 75 LTAVSGVGPKAGLAILSVMSPEKIALAASSGDHKAFTKASGVGPKLAQRITLELKDKVGK 134 Query: 132 AIS-LSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATTAVVSVLKKEK 189 ++ + D+S MPS A A++ALV+LGY A AV V + Sbjct: 135 GLADGTGFGGADLS---------APMPSSAPAQAVAALVSLGYTPSDAAAAVARV-DETL 184 Query: 190 NIADDSQIIRLALRAIS 206 ++ D II++ALR++S Sbjct: 185 SVQD---IIKVALRSLS 198 >gi|254246308|ref|ZP_04939629.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184] gi|124871084|gb|EAY62800.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184] Length = 164 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 21/179 (11%) Query: 31 PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 P+ T L + G+ L + +R+D L+GFL+ +R F L + G+GAR+A+ VL Sbjct: 2 PMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAVL 61 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150 S ++ EL +++ +Q++ + ++PGI K A R++ ELKGK + + S + Sbjct: 62 SGMSVQELAQAVTMQDAARLTRLPGIGKKTAERLLLELKGKLGADLGALAGAASASD--- 118 Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206 A + ++AL+ LGY + + A+ KN+ S+ I+LAL+A+S Sbjct: 119 --------HATDILNALLALGYSEKEGLAAI-------KNVPAGTGVSEGIKLALKALS 162 >gi|320093778|ref|ZP_08025625.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979279|gb|EFW10775.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 178 str. F0338] Length = 199 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 12/183 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G +E + D V++ GV + + L + GD + +R+D + L Sbjct: 1 MIALLRGVVESIGLDQVVVSAGGVGFGVRVTPAHAQSLTR-GDEAVVHTAMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+G + A+ L+ + +L ++ Q+ + +IPG+ K Sbjct: 60 YGFASADERDVFERLMGVTGIGPKTALAALAVLRPDDLRRAVRDQDIATLQKIPGVGRKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA--ISALVNLGYGQDQAT 178 A R+ E+ GK L + Q EQ + P+ + A +ALV LG+ + QA Sbjct: 120 AQRMALEVGGK---LGAPAQL------PEQGGPAAAPAGEVEAEVRAALVGLGWSEAQAA 170 Query: 179 TAV 181 AV Sbjct: 171 KAV 173 >gi|295425862|ref|ZP_06818542.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus amylolyticus DSM 11664] gi|295064465|gb|EFG55393.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus amylolyticus DSM 11664] Length = 197 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 13/195 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 M + G I + Y+++DV GV Y ++ P G+ ++VE + + Sbjct: 1 MFEYLDGTIAEISPSYIVVDVNGVGYKVFSPTPFAYHQGQK---AKVYVEQNFSDNNGFT 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + F+ L SV G+G + A+ +++ + L E+I K + + PG+ K Sbjct: 58 LYGFQDKNAKGLFLKLLSVSGIGPKSALAIMAAEDSDSLAEAIEQGEVKYLTRFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 AS+I+ +LKGK L V + D + + E+ P +A+ AL+ LGY Q + Sbjct: 118 TASQIVLDLKGK---LGDYVNRLDRTVADNEEIS----PELH-DALLALIALGYTQKEVN 169 Query: 179 TAVVSVLKKEKNIAD 193 + K + + AD Sbjct: 170 RITPKLEKIDTDSAD 184 >gi|257866610|ref|ZP_05646263.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC30] gi|257872874|ref|ZP_05652527.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC10] gi|257800568|gb|EEV29596.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC30] gi|257807038|gb|EEV35860.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC10] Length = 196 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 100/203 (49%), Gaps = 24/203 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G + ++ Y++++ G+ Y I S GK+ +++ +R+D L+GF + Sbjct: 7 GKVTDIFPAYIVVETHGIGYQIAFG-NPYSFSGKLNQEVKIYLHQVIREDAHSLYGFATI 65 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +Q F+ L SV G+G + A+ +++ T L+ ++ + + + PG+ K A +++ Sbjct: 66 EGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKTAQQMIL 125 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVL 185 +LKGK L V +E S+ + A++ A+ AL LGY + + V Sbjct: 126 DLKGKVAEL----------VGEEAIVPLSVATTALDEAMEALKALGYSEKE-------VK 168 Query: 186 KKEKNIADDS-----QIIRLALR 203 K EK +A+++ + +R ALR Sbjct: 169 KAEKQLAENTTKSTDEYLREALR 191 >gi|300870312|ref|YP_003785183.1| Holliday junction DNA helicase RuvA [Brachyspira pilosicoli 95/1000] gi|300688011|gb|ADK30682.1| holliday junction DNA helicase, RuvA [Brachyspira pilosicoli 95/1000] Length = 194 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 87/165 (52%), Gaps = 12/165 (7%) Query: 43 DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102 D L+ + ++D + L+GF + +++ F L S GVGA++AM VLS + E++ + Sbjct: 41 DNIRLYTQLIHKEDSMTLYGFKTREEKKMFNTLMSASGVGAKLAMEVLSTYSIDEIMHIL 100 Query: 103 ILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 ++ ++ ++ G+ +K A +++ E++ K + + N+ ++ + Sbjct: 101 FNKDINMLKKVQGMGVKKAEKLLFEIRDKIEKIDINISSSKISYNENESDV--------- 151 Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 I AL++LG+ ++A A+ ++ KE +D +I LALR +S Sbjct: 152 -IKALISLGFSNNEAVKALSNIENKENKTTED--LISLALRNLSS 193 >gi|229086983|ref|ZP_04219140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-44] gi|228696359|gb|EEL49187.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-44] Length = 205 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 16/194 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV++D G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVLDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A +++ +LKGK L+ VV D+ ++++ + A+ AL LGY Sbjct: 119 ARQMILDLKGK---LADVVPDAFVDLFSDVERFDEKKGSSAELD----EALEALRALGYA 171 Query: 174 QDQATTAVVSVLKK 187 + + + +LK+ Sbjct: 172 EREVNRVIPELLKE 185 >gi|327394173|dbj|BAK11595.1| Holliday junction DNA helicase RuvA [Pantoea ananatis AJ13355] Length = 175 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 15/179 (8%) Query: 34 TLSCLGKIGDF---CTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 ++C ++ D +F + +R+D LFGF S +R F L V GVG ++A+ +L Sbjct: 2 PMTCFYELPDLNHEAVIFTQFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAIL 61 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150 S ++A + V ++ + + ++PG+ K A R++ E+K + + D+ + Sbjct: 62 SGMSAQQFVTAVEKEEIAALVKLPGVGKKTAERLVVEMKDRFKGMHG----DLFGGDSAF 117 Query: 151 AHICSMPSFAIN-----AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 P N A++ALV+LGY +A+ + V + + AD +IR ALRA Sbjct: 118 TLTTPGPEPETNDAESEAVAALVSLGYKPQEASRMISKVGRPD---ADCETLIREALRA 173 >gi|254431586|ref|ZP_05045289.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001] gi|197626039|gb|EDY38598.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001] Length = 214 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 4/133 (3%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G+I ++ +L+ +GV Y + R L G L + +R+D Sbjct: 1 MIGWLQGDIADPWQHDKRCGLLLLCRGVGYEVQVSQRDWRRLPPPGSPLALHIHQSIRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R F L +V GVG ++AMG+L + ELV++I+ + + + Q PG+ Sbjct: 61 AWTLYGFTARQERDLFRDLVAVSGVGPQMAMGLLGALEMEELVQAIVQPDLRRLCQAPGV 120 Query: 117 SMKIASRIMTELK 129 + A R+ EL+ Sbjct: 121 GKRTAERLAVELR 133 >gi|329767086|ref|ZP_08258614.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341] gi|328837811|gb|EGF87436.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341] Length = 193 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 25/184 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG I + +++D G+ Y ++ P ++ + +F+ +R+D Sbjct: 1 MYAYIKGKISEINPTNIVVDNNGIGYEVVVANPYEY-----QLNEEKIVFISQQVREDSN 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q+ + + PGI Sbjct: 56 ILYGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVNYLTKFPGIGK 115 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS----ALVNLGYGQ 174 K A +I+ +L+GK D S N I S P+ N +S AL LGY + Sbjct: 116 KSAQQIILDLQGKV---------DFSMTN-----ISSAPTAVNNYLSDAMLALEALGYSK 161 Query: 175 DQAT 178 + T Sbjct: 162 KELT 165 >gi|317508678|ref|ZP_07966333.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC BAA-974] gi|316252999|gb|EFV12414.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC BAA-974] Length = 199 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 11/191 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + D+V+++ G+ Y ++ P + + + GD L +R+D Sbjct: 1 MIASVRGEAVEVGADHVVVECAGLGYHVVVLP--STAAMAARGDELRLVTSFIVREDAQT 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF R F +L++V GVG ++AM VLS + +L +I + + ++PG+ + Sbjct: 59 LYGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPAQLRRAIGEGDLAALTRVPGVGKR 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A R+ ELK K V + K A S + LV LG+ A + Sbjct: 119 VAERLALELKEK-------VGVGVGATGKPGAPEGSA-LVRQQVVDGLVGLGFALKPAES 170 Query: 180 AVVSVLKKEKN 190 A SVL ++++ Sbjct: 171 AADSVLAEDQD 181 >gi|283954372|ref|ZP_06371893.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 414] gi|283794171|gb|EFC32919.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 414] Length = 183 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 28/185 (15%) Query: 23 GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 G+ Y I+ +L C KI + F+ +++D + +GFL +++ F +L V G Sbjct: 24 GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 VGA AM V S + +++ L + V+ ++PGI K A RI+ EL + L + V Sbjct: 81 VGANTAMAVCSSLDVNSFYKALSLSDESVLKKVPGIGPKSAKRIIVELSDTNMKLEN-VS 139 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 D S A++AL+ LG+ Q++ ++SVL + I S++I+ Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASSQAIG-TSELIKE 177 Query: 201 ALRAI 205 ALR + Sbjct: 178 ALRKL 182 >gi|104774420|ref|YP_619400.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300811568|ref|ZP_07092052.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|123251847|sp|Q1G940|RUVA_LACDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|103423501|emb|CAI98403.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300497428|gb|EFK32466.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 197 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YV+I+V G+ Y I P K GD ++VE +R++ + L+GF S D+ F L Sbjct: 16 YVVIEVAGIGYRILTPT---PYAYKDGDKARIYVEQVVRENGMTLYGFKSQQDKVLFNKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 V G+G + A+ +++ L +I + + PGI K AS+I+ +L+GK + Sbjct: 73 NEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKTASQIVLDLRGK---M 129 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + V +++ E + S+ +A+ AL LGY Q + + LKK ++ D Sbjct: 130 GNYVAENLFT---EDEPVKSVFPALEDALLALGALGYSQKEVDR-IKPKLKKLPEMSADE 185 Query: 196 QI 197 I Sbjct: 186 YI 187 >gi|325685740|gb|EGD27818.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 197 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YV+I+V G+ Y I P K GD ++VE +R++ + L+GF S D+ F L Sbjct: 16 YVVIEVAGIGYRILTPT---PYAYKDGDKARIYVEQVVRENGMTLYGFKSQQDKVLFNKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 V G+G + A+ +++ L +I + + PGI K AS+I+ +L+GK + Sbjct: 73 NEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKTASQIVLDLRGK---M 129 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + V +++ E + S+ +A+ AL LGY Q + + LKK ++ D Sbjct: 130 GNYVAENLFT---EDEPVKSVFPALEDALLALGALGYSQKEVDR-IKPKLKKLPEMSADE 185 Query: 196 QI 197 I Sbjct: 186 YI 187 >gi|126656681|ref|ZP_01727895.1| Holliday junction DNA helicase motor protein [Cyanothece sp. CCY0110] gi|126621901|gb|EAZ92609.1| Holliday junction DNA helicase motor protein [Cyanothece sp. CCY0110] Length = 212 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 ++++V + Y I P + + + D +F ++ DQ L+GF + +R+ F L Sbjct: 22 LVLEVNQIGYEIQIPSKLARDISQEKLDIIQVFTHLQIKDDQQILYGFFTTAERELFRQL 81 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 SV G+GA+ A+ ++ + ELV++I+ N ++++Q PGI K A RI EL+ K Sbjct: 82 ISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQTPGIGKKTAERIALELRTK---- 137 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQATTAVVSV 184 + Q V +MPS I + L+ LGY ++ A+ ++ Sbjct: 138 ---LSQWRKLVGVTVTSSSAMPSLEILEDIEMTLLALGYTNEEINKAISTL 185 >gi|317488563|ref|ZP_07947108.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA] gi|316912305|gb|EFV33869.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + I+V GV Y + +LS L + G + +R D + L Sbjct: 1 MIAFLKGVLAAKTATTAFIEVNGVGYAVGMSQASLSKLPEAGAAVEVHTFLQVRDDGLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F L V GVG +VA+ LS + LV ++ Q+ + +IPG+ K Sbjct: 61 FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG + ++ + E A + + AL+++G+ ++A A Sbjct: 121 ASRIILELKGS-------FDEGLAGLFDEAAPAVASAANLAGTREALLSMGFTSEEADVA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 LK A +S +++ AL+ + Sbjct: 174 ----LKGAPEGAAESVLLQYALKRLGT 196 >gi|118467715|ref|YP_887263.1| Holliday junction DNA helicase RuvA [Mycobacterium smegmatis str. MC2 155] gi|166230568|sp|A0QWH5|RUVA_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118169002|gb|ABK69898.1| holliday junction DNA helicase RuvA [Mycobacterium smegmatis str. MC2 155] Length = 195 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ R F+ L V GVG ++A+ L+ L +++ + + ++PGI + Sbjct: 60 YGFVDGDARDLFLTLLGVSGVGPKIALATLAVYDPQALRQALADGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + V+ + + ALV LG+ QA A Sbjct: 120 AERMVLELRDK-----------IGPVSAGGGAAVGGHAIRGPVVEALVGLGFAAKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 VL + A S +R AL Sbjct: 169 TDKVLANDPE-ATTSSALRAAL 189 >gi|224532061|ref|ZP_03672693.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116] gi|224511526|gb|EEF81932.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116] Length = 196 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 37 CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL K+ D LF + R+++++LFGFL+ +R+ F L V G+G R A+ VLS I Sbjct: 34 CLANFKLSDKVELFTYLYTRENELKLFGFLNSDERETFKGLIGVSGIGPRAALRVLSNIR 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 E ++I ++ +++A+I GI K+A ++ L+GK + +++ ++ ++ + + I Sbjct: 94 YNEFKDAIDREDVELVAKIKGIGKKMAGKMFLHLQGKLL-INNELESNLFRFKELEESII 152 Query: 155 SM 156 SM Sbjct: 153 SM 154 >gi|229032072|ref|ZP_04188054.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1271] gi|228729264|gb|EEL80259.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1271] Length = 197 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 8/176 (4%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + +F ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVFTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV + + ++ A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDTERFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE 177 >gi|116617732|ref|YP_818103.1| Holliday junction resolvasome, DNA-binding subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272067|sp|Q03YJ2|RUVA_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116096579|gb|ABJ61730.1| Holliday junction DNA helicase subunit RuvA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 196 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I + Y++I + GV Y +Y P R + ++V+ +R++ Sbjct: 1 MYEYINGLITNITPSYIVIASRSGVGYRLYSANPYRFEENVE-----SHVYVQQIVREND 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I L+GF+ ++ F L +V G+G + A+ +L+ A L+ ++ N + Q PG+ Sbjct: 56 ISLYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVG 115 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +I+ +LKGK L+S S N EQ+ +A+ AL+ LGY + Sbjct: 116 KKTAQQIVLDLKGKLDELASKTGMVDSSSNPEQSQALD------DALEALLALGYTA-KD 168 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + + D IR AL+ Sbjct: 169 VKAVAQIIGRNSDTTD--GYIRSALK 192 >gi|229076052|ref|ZP_04209023.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-18] gi|229098895|ref|ZP_04229831.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-29] gi|229105059|ref|ZP_04235711.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-28] gi|229117921|ref|ZP_04247283.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-3] gi|228665578|gb|EEL21058.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-3] gi|228678369|gb|EEL32594.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-28] gi|228684568|gb|EEL38510.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-29] gi|228707086|gb|EEL59288.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-18] Length = 197 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D+ ++++ + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDVESFDEKKGSSVELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|325832047|ref|ZP_08165144.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1] gi|325486368|gb|EGC88820.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1] Length = 205 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 68/130 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G I+V GV Y + +LS L + G + +R D + L Sbjct: 1 MIAFLKGTLAGKTATTAYIEVNGVGYAVGMSQASLSKLPEAGAPVEVHTFLQVRDDALAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L V GVG +VA+ LS + LV ++ Q+ + +IPG+ K Sbjct: 61 YGFLALEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120 Query: 121 ASRIMTELKG 130 ASRI+ ELKG Sbjct: 121 ASRIILELKG 130 >gi|229019645|ref|ZP_04176455.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1273] gi|229025883|ref|ZP_04182279.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1272] gi|228735435|gb|EEL86034.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1272] gi|228741648|gb|EEL91838.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1273] Length = 197 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D+ ++++ + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDVESFDQKKGSSVELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|116514518|ref|YP_813424.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274750|sp|Q048Y6|RUVA_LACDB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116093833|gb|ABJ58986.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126230|gb|ADY85560.1| Helicase Holliday junction [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 197 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YV+I+V G+ Y I P K GD ++VE +R++ + L+GF S D+ F L Sbjct: 16 YVVIEVAGIGYRILTPT---PYAYKEGDKARIYVEQVVRENGMTLYGFKSQQDKVLFNKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 V G+G + A+ +++ L +I + + PGI K AS+I+ +L+GK + Sbjct: 73 NEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKTASQIVLDLRGK---M 129 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + V +++ E + S+ +A+ AL LGY Q + + LKK ++ D Sbjct: 130 GNYVAENLFT---EDEPVESVFPALEDALLALGALGYSQKEVDR-IKPKLKKLPEMSADE 185 Query: 196 QI 197 I Sbjct: 186 YI 187 >gi|89898693|ref|YP_515803.1| Holliday junction DNA helicase RuvA [Chlamydophila felis Fe/C-56] gi|123749524|sp|Q252Y0|RUVA_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89332065|dbj|BAE81658.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56] Length = 207 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I R L L G + ++ T +R+ + Sbjct: 1 MYDYIRGILTYMSSGTMVIECQGLGFSICASDRWLMELAGLLHREVIVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F +L S GVG + + +L+ ++L ++ K +A +PGI K Sbjct: 61 LYGFRSRGERECFRMLISFSGVGPKTGLAILNTFALSKLCSIARAEDVKALASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q ++ + PS + I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLPELLPLDSQTLTSWKPAK------PSCMEDGIQALAALGYPKSSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + + + + A ++I+ +AL+ Sbjct: 175 MIAEAITELPDNASLAEILPIALK 198 >gi|329769669|ref|ZP_08261073.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325] gi|328838424|gb|EGF88033.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325] Length = 192 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 91/180 (50%), Gaps = 18/180 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG I + +++D G+ Y ++ P ++ + +F+ +R+D Sbjct: 1 MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEY-----QLEEEKQIFISQQVREDSN 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q++ + + PGI Sbjct: 56 TLYGFSTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDAVYLTKFPGIGK 115 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A +I+ +L+GK + ++ + N+ + +A+ AL LGY + + T Sbjct: 116 KSAQQIILDLQGK-VDFAATASTPNNNANQ----------YLKDALLALEALGYSKKELT 164 >gi|224436530|ref|ZP_03657539.1| Holliday junction DNA helicase RuvA [Helicobacter cinaedi CCUG 18818] gi|313143033|ref|ZP_07805226.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter cinaedi CCUG 18818] gi|313128064|gb|EFR45681.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter cinaedi CCUG 18818] Length = 195 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 13/189 (6%) Query: 19 IDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 IDV GV Y + + S L G+ G + +R+D LFGF+ ++++Q F L Sbjct: 19 IDVGGVIYGVQMSLNATSKLRGEGGKEVKIICTQIIREDSHLLFGFVEEIEKQTFERLIK 78 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 + GVG +VA+ +LS T E + I ++ + ++PGI K A +IM ++ G L S Sbjct: 79 INGVGPKVALAILSTYTPMEFAKIISNKDVDALKKVPGIGAKGAGKIMVDVAGFFAGLIS 138 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 D S + + + S+ + A+ AL +LG+ A A+ + S++ Sbjct: 139 ----DTSLADGKLSQENSLKN---EALLALQSLGFKNTDAQKALQGI-----EAQSVSEL 186 Query: 198 IRLALRAIS 206 ++LAL+ ++ Sbjct: 187 VKLALKKLA 195 >gi|15618530|ref|NP_224816.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae CWL029] gi|15836152|ref|NP_300676.1| Holliday junction DNA helicase motor protein [Chlamydophila pneumoniae J138] gi|16752420|ref|NP_444679.1| Holliday junction DNA helicase motor protein [Chlamydophila pneumoniae AR39] gi|33241977|ref|NP_876918.1| Holliday junction DNA helicase motor protein [Chlamydophila pneumoniae TW-183] gi|6685955|sp|Q9Z7T4|RUVA_CHLPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|4376917|gb|AAD18759.1| Holliday Junction Helicase [Chlamydophila pneumoniae CWL029] gi|7189062|gb|AAF38010.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae AR39] gi|8978992|dbj|BAA98827.1| holliday junction helicase [Chlamydophila pneumoniae J138] gi|33236487|gb|AAP98575.1| RuvA [Chlamydophila pneumoniae TW-183] gi|269302404|gb|ACZ32504.1| holliday junction DNA helicase RuvA [Chlamydophila pneumoniae LPCoLN] Length = 207 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59 M I+G + ++ ++I+ QG+ Y I R + C+ + +F R+ + Sbjct: 1 MYDYIRGTLTYVHTGAIVIECQGIGYHIAITERWAIECIRALHQDFLVFTHVIFRETEHL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F +L S G+G ++A+ +L+ + L + ++ + +A + GI K Sbjct: 61 LYGFHSREERECFRILISFSGIGPKLALAILNALPLKVLCSVVRSEDIRALASVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M ELK K L ++ D S V Q H S S I AL LGY + A Sbjct: 121 TAEKLMVELKQK---LPDLLPLD-SRVETSQTHTTS--SCLEEGIQALAALGYSKIAAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + +K + + I+ +AL+ Sbjct: 175 MIAEAIKDLPEGSSLTDILPIALK 198 >gi|227510189|ref|ZP_03940238.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513117|ref|ZP_03943166.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC 11577] gi|227083692|gb|EEI19004.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC 11577] gi|227190394|gb|EEI70461.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 198 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 13/201 (6%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62 + G I + Y+++ V G+ Y+IY P R K ++V + I L+G Sbjct: 5 MDGQIVDITPAYIVLLVNGIGYLIYTADPYRFNVDQNKT---IRVYVYQSVSDSAILLYG 61 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 F D++ F L +V G+G + A+ +L+ + LV +I ++ K + + PG+ K A Sbjct: 62 FYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVSAISNKDVKFLTKFPGVGKKTAQ 121 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 +I+ +L+GK LS +VQ EQ+ +AISAL LGY Q A+ Sbjct: 122 QIILDLQGKVGDLSQIVQARSGQSASEQSDELR------DAISALEALGYSAKQ-IDAIR 174 Query: 183 SVLKKEKNIADDSQIIRLALR 203 L K+K + D + + L L+ Sbjct: 175 LELGKDKALTTD-EYLSLGLK 194 >gi|257784697|ref|YP_003179914.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469] gi|257473204|gb|ACV51323.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469] Length = 210 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 13/189 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + + ++DV GV Y + T + L + G+ T+ +R+D + Sbjct: 1 MIVQLTGTLVSVTPSVAVLDVNGVGYELGISASTAAALPQAGEAGVTVLTRMVVREDSME 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S +R F L+++ GVG ++A+ VLS T +L + + + + G+ K Sbjct: 61 LFGFASREERALFDRLRAISGVGPKLALSVLSTFTPQQLAVIVATNDGNRLKSVSGLGKK 120 Query: 120 IASRIMTELK---GKAISLSSVV----QQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A R++ EL K L +V D + + K ++ S AI AL+ +G+ Sbjct: 121 KAERLIIELSDVFAKDTELKQLVGLTSPTDFASIPK-----PTVTSVESEAIEALLGMGF 175 Query: 173 GQDQATTAV 181 +AT A+ Sbjct: 176 TSQEATLAL 184 >gi|70726280|ref|YP_253194.1| Holliday junction DNA helicase RuvA [Staphylococcus haemolyticus JCSC1435] gi|90135915|sp|Q4L6Y7|RUVA_STAHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68447004|dbj|BAE04588.1| holliday junction DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 201 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 108/208 (51%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCP--IRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I+G + L+ +V+++ + GV Y I P R L K ++ +R+D Sbjct: 1 MYAYIRGKLTQLFPTHVVVESINGVGYEIQTPNSYRFQKYLEK---ELVIYTSLIVREDA 57 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF+++ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI Sbjct: 58 QLLYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKMAIENENDAYLTKFPGIG 117 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +I+ +LKGK + ++ + + +N+E ++ ++ A+ A+ A LGY + + Sbjct: 118 KKTARQIVLDLKGK-VQITRETTETLLSMNEENSNSENLVKEALLALEA---LGYSKRE- 172 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V VL K + D + ++L L+ + Sbjct: 173 ISKVEKVLNKSTFDSVD-EAVKLGLKTL 199 >gi|227432395|ref|ZP_03914385.1| crossover junction endoribonuclease subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351834|gb|EEJ42070.1| crossover junction endoribonuclease subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 196 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I + Y++I + GV Y +Y P R + ++V+ +R++ Sbjct: 1 MYEYINGLITNITPSYIVIASRSGVGYRLYSANPYRFEENVE-----SHVYVQQIVREND 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I L+GF+ ++ F L +V G+G + A+ +L+ A L+ ++ N + Q PG+ Sbjct: 56 ISLYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVG 115 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +I+ +LKGK L+S S N EQ+ +A+ AL+ LGY + Sbjct: 116 KKTAQQIVLDLKGKLDELASKTGMVDSSSNPEQSQDLD------DALEALLALGYTA-KD 168 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 AV ++ + + D IR AL+ Sbjct: 169 VKAVAQIIGRNSDTTD--GYIRSALK 192 >gi|126642622|ref|YP_001085606.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC 17978] Length = 176 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 8/180 (4%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y I P+ T L K G TL+ +R+D +L+GF ++ F L V GVG ++ Sbjct: 3 YEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQLYGFSDAQEKTIFRTLLKVNGVGPKM 61 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 A+G+LS ++ LV +I + + ++PG+ K A R+M EL+ + ++ Q S Sbjct: 62 ALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKTAERLMIELRDR---FKTLAQGTSSA 118 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 Q S A A +AL +LGY +A AV +V AD IIR AL+++ Sbjct: 119 AALPQIQFVSNSPVA-EAEAALQSLGYKPLEAQKAVAAVKADYTESAD---IIRAALKSM 174 >gi|157736995|ref|YP_001489678.1| Holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018] gi|167012656|sp|A8EST5|RUVA_ARCB4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157698849|gb|ABV67009.1| holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018] Length = 185 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 24/188 (12%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 ++V GV Y ++ +L+C KI D L + +R+D L+GFL +++ F + Sbjct: 19 VNVNGVIYEVFV---SLNCSSKIVSDDVKLEITHIIREDAQSLYGFLDSNEKKLFDTVIK 75 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 + GVG +VA+ + S T T + + + ++ ++PGI K ASRI+ EL G I Sbjct: 76 INGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKGASRILVELSGFIID--- 132 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 N E S S A+ A AL +LG+ +D V SVLK N ++ S + Sbjct: 133 --------SNDE----TSGSSSALEAALALESLGFKKD----LVSSVLKTCVN-SNTSDL 175 Query: 198 IRLALRAI 205 ++ AL+ + Sbjct: 176 VKEALKKL 183 >gi|323341472|ref|ZP_08081713.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus ruminis ATCC 25644] gi|323091083|gb|EFZ33714.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus ruminis ATCC 25644] Length = 203 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 21/205 (10%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 G I ++ Y++++ G+ Y+I P R S K +++ +R+++I L+GF Sbjct: 7 GTITQVFPAYIVVENNGIGYLINVANPFRFKSDETKQ---EKIYLHQIVRENEIVLYGFS 63 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++Q F+ L SV G+G + A+ +L+ V ++ + + + PGI K A +I Sbjct: 64 DFNEKQLFLKLISVSGIGPKSALAILANEDHNGFVSAVNNDDDAYLTKFPGIGKKTAKQI 123 Query: 125 MTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + +LKGK L S QQD+ V ++ + + A+ AL+ LGY T Sbjct: 124 ILDLKGKLGGLESGKPLKGQQDLEIVAEQTS------PYLKEALEALLALGY----TKTE 173 Query: 181 VVSVLKKEKNIADDS--QIIRLALR 203 V +K + DS + +R ALR Sbjct: 174 VKKTGRKLLDFKGDSTDEYLRQALR 198 >gi|145224407|ref|YP_001135085.1| Holliday junction DNA helicase motor protein [Mycobacterium gilvum PYR-GCK] gi|315444739|ref|YP_004077618.1| Holliday junction DNA helicase, Ruvsubunit alpha [Mycobacterium sp. Spyr1] gi|189045758|sp|A4TBQ6|RUVA_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145216893|gb|ABP46297.1| DNA recombination protein RuvA, domain I [Mycobacterium gilvum PYR-GCK] gi|315263042|gb|ADT99783.1| Holliday junction DNA helicase, RuvA subunit [Mycobacterium sp. Spyr1] Length = 195 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D L Sbjct: 1 MIASVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGSEARLITAMIVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L V G+G +A+G L+ L ++I + + +IP + K Sbjct: 60 YGFADSDARDLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDLTALTRIPKVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A + L+ K S +S S V H P + ALV LG+ QA A Sbjct: 120 AELLALTLRDKVGSSTS------SGVAAAGGHGIRGP-----VVEALVGLGFAVKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 VL + A S +R AL Sbjct: 169 TDKVLANDPE-ATTSSALRAAL 189 >gi|159037423|ref|YP_001536676.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205] gi|189045766|sp|A8LXW8|RUVA_SALAI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157916258|gb|ABV97685.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205] Length = 200 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +I+V GV + C T++ L ++G L +R+D + L Sbjct: 1 MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D + F LLQ+ GVG R+A VL+ T + +I ++ + ++PGI K Sbjct: 60 YGFADDNAKALFELLQTASGVGPRLAQAVLAVHTPETVRAAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELK 129 A R++ EL+ Sbjct: 120 AERLVLELR 128 >gi|291301298|ref|YP_003512576.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM 44728] gi|290570518|gb|ADD43483.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM 44728] Length = 200 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + I V GV + TL+ L ++G TL+ +R+D + L Sbjct: 1 MIASLTGTVTHVSTSTATITVGGVGMSVRATPGTLANL-RVGGESTLYTTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F LLQ+ GVG R+A L+ + +I ++ + +IPG+ K Sbjct: 60 YGFEAPDERDLFELLQTASGVGPRLAQAALAVHPPATVRHAIASGDTATLTRIPGVGKKG 119 Query: 121 ASRIMTELKGK 131 A R++ ELK K Sbjct: 120 AERLVLELKDK 130 >gi|183220888|ref|YP_001838884.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910985|ref|YP_001962540.1| Holliday junction specific DNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|229560095|sp|B0SGZ5|RUVA_LEPBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560096|sp|B0SQF0|RUVA_LEPBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167775661|gb|ABZ93962.1| Holliday junction specific DNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779310|gb|ABZ97608.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 199 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 18/192 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVET-HMRQDQ- 57 MI ++G + L D ++++V GV Y + P L C K+ +++ T H D+ Sbjct: 1 MIASLRGKLLQLEIDRLVVEVSGVGYEVMIPFPLHLECKDKLN--TEIYIHTFHSITDRG 58 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 RLFGF S DR+ F L++S+ G+G A+ +LS A +L + + K + +IP + Sbjct: 59 QRLFGFGSKKDRESFELIKSLHGIGELTALKILSFFQADDLYQIAKADDKKTLEKIPKVK 118 Query: 118 MKIASRIMTELKGKAISLSSVVQQ---DMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 K + +I+ E+K + + + S V++E + ++ AL+ LG+ + Sbjct: 119 GKTSEKILFEIKQNLKKFEMFLNEGTTESSFVDRE-TDLATL---------ALIQLGFDE 168 Query: 175 DQATTAVVSVLK 186 AT V K Sbjct: 169 KSATKQVADAKK 180 >gi|315645785|ref|ZP_07898906.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453] gi|315278546|gb|EFU41860.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453] Length = 178 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAM 87 ++CP K T++ H+R D I LFGF S +++ F L V G+G RVA+ Sbjct: 1 MFCP--NPYAFAKTEGTVTVYTHHHVRDDAILLFGFPSREEQKLFRKLIEVSGIGPRVAL 58 Query: 88 GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 G+L + +V +I +N + ++PGI K A R++ +LK K Sbjct: 59 GILGGGSPDHVVSAIYQENVSFLVKLPGIGKKTAQRMILDLKDK 102 >gi|229081685|ref|ZP_04214180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-2] gi|228701689|gb|EEL54180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-2] Length = 197 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D ++++ + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|118475489|ref|YP_891982.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp. fetus 82-40] gi|166230534|sp|A0RP49|RUVA_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118414715|gb|ABK83135.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp. fetus 82-40] Length = 184 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I V I + GV Y I + T + L K G+ LF+ +R+D Sbjct: 1 MIKAIEGIITKKEPTNVWIKTLSGVSYGISISLFTSASLQK-GEKVELFITQVIREDANL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ + +++ F +L V G+GA AM V S + E +++ + V+ ++PGI K Sbjct: 60 LYGFIKESEQRIFEMLLKVNGIGASTAMAVCSSLGPDEFSIAVMNGDDAVLRRVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++ +L + + I SMPS+ A AL +LG+ +D+ Sbjct: 120 TARTLIAQLS-----------------DAKFGEINSMPSYQNEAFMALESLGFKRDR--- 159 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 +S + E + D + +I+ AL+ ++ Sbjct: 160 --ISKVLNECSSNDTASLIKEALKKLA 184 >gi|149183130|ref|ZP_01861580.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1] gi|148849162|gb|EDL63362.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1] Length = 202 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G ++ + +YV+++ G+ Y I+ L + + T++ H+R+D + L Sbjct: 1 MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKFENQN-TTIYTYQHVREDILAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ F+ L +V G+G + A+ +L+ +++ +I ++ + + + PG+ K Sbjct: 60 YGFLSMEEKMLFIKLLNVSGIGPKGALAILASGAPEQVISAIEGEDERFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQAT 178 A +++ +LKGK L VV + +E H + + A AL LGY + + Sbjct: 120 ARQMILDLKGK---LQDVVPDYFPNLFQEGKHESVSANDELVEEAALALKALGYSEREIK 176 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 + ++K ++I+ AL+ Sbjct: 177 KVTPKLSSQDKTT---DELIKDALK 198 >gi|224534918|ref|ZP_03675487.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S] gi|224513858|gb|EEF84183.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S] Length = 196 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 K+ D LF + R+++++LFGFL+ +R+ F L V G+G R A+ VLS I E Sbjct: 39 KLSDKVELFTYLYTRENELKLFGFLNSDERETFKRLIGVSGIGPRAALRVLSSIRYNEFK 98 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156 ++I ++ +++A+I GI K+A ++ L+GK + +++ ++ + + + I SM Sbjct: 99 DAIDREDIELVAKIKGIGKKMAGKMFLHLQGKLL-INNELESSLFGFKELEESIVSM 154 >gi|228923173|ref|ZP_04086464.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941589|ref|ZP_04104137.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960694|ref|ZP_04122338.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967497|ref|ZP_04128525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar sotto str. T04001] gi|228974518|ref|ZP_04135085.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981112|ref|ZP_04141413.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis Bt407] gi|228987674|ref|ZP_04147786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229111893|ref|ZP_04241439.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-15] gi|229129701|ref|ZP_04258669.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-Cer4] gi|229146992|ref|ZP_04275354.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST24] gi|229152624|ref|ZP_04280813.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1550] gi|229158036|ref|ZP_04286107.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 4342] gi|229175095|ref|ZP_04302612.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus MM3] gi|228608391|gb|EEK65696.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus MM3] gi|228625489|gb|EEK82245.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 4342] gi|228630885|gb|EEK87525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1550] gi|228636489|gb|EEK92957.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST24] gi|228653818|gb|EEL09688.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-Cer4] gi|228671649|gb|EEL26947.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-15] gi|228772059|gb|EEM20513.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778653|gb|EEM26919.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis Bt407] gi|228785235|gb|EEM33247.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792212|gb|EEM39786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar sotto str. T04001] gi|228799000|gb|EEM45973.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818096|gb|EEM64173.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836552|gb|EEM81902.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 197 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D ++++ + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|229071929|ref|ZP_04205140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus F65185] gi|228711225|gb|EEL63189.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus F65185] Length = 197 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D ++++ + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDAERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|94984833|ref|YP_604197.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM 11300] gi|122986676|sp|Q1J0F6|RUVA_DEIGD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94555114|gb|ABF45028.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM 11300] Length = 198 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 9/198 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + E +I GV Y ++CP TL L G L + +R+D L Sbjct: 1 MIAYLSGAVREVREASAVIVAGGVGYEVFCPASTLGRL-VPGQPAELNIRHVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + F LL V GVG ++A+ +LS + T + + ++ + K+++ + G+ K Sbjct: 60 FGFLDTDSLRLFDLLIGVSGVGPKLALSLLSALPVTAVAQGLLSGDVKLLSSVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179 A R++ EL+ K V + ++ A ++ S A +AI AL+ LG+ + Q + Sbjct: 120 AERLVLELQNK-------VPEHLAAGAPVSAGKAALTSTAGRDAIEALLALGFREPQVRS 172 Query: 180 AVVSVLKKEKNIADDSQI 197 V +L + + D+ I Sbjct: 173 VVAELLAADPEQSADALI 190 >gi|240173173|ref|ZP_04751831.1| Holliday junction DNA helicase RuvA [Mycobacterium kansasii ATCC 12478] Length = 195 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 13/190 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIAGVRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTEARLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L ++ + + ++PGI + Sbjct: 60 YGFGDRETRDLFLTLLSVSGVGPRLAMATLAVHDAAALRRALADGDVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V + + P + ALV LG+ QA A Sbjct: 120 AERMVLELRDK-------VGPAGAAAPALNGNAVRTP-----VVEALVGLGFAAKQAEEA 167 Query: 181 VVSVLKKEKN 190 VL E Sbjct: 168 TDKVLAAEPG 177 >gi|119509314|ref|ZP_01628464.1| Holliday junction DNA helicase motor protein [Nodularia spumigena CCY9414] gi|119466156|gb|EAW47043.1| Holliday junction DNA helicase motor protein [Nodularia spumigena CCY9414] Length = 213 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%) Query: 1 MIGKIKGNIEGLY-----EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + ++V + Y + P R L + G +F +R Sbjct: 1 MISYLKGIVAGIQTIGGGRMMLTLEVNNLGYDLQVPQRLAKQLPESGGVTQIFTHLQIRD 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+G A+ +L + +LV++II N++++ Q PG Sbjct: 61 EVPFLYGFASPAERDLFRQLLSVSGIGTACAIALLDTLEVPDLVQAIIAANTQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAIS 134 + K A RI ELK K + Sbjct: 121 VGKKTAERICLELKTKLVE 139 >gi|313124267|ref|YP_004034526.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280830|gb|ADQ61549.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 197 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YV+I+V G+ Y I P K GD ++VE +R++ + L+GF S D+ F L Sbjct: 16 YVVIEVAGIGYRILTPT---PYAYKDGDKARIYVEQVVRENGMTLYGFKSQQDKVLFNKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 V G+G + A+ +++ L +I + + PGI K A++I+ +L+GK + Sbjct: 73 NEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKTAAQIVLDLRGK---M 129 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + V +++ E + S+ +A+ AL LGY Q + + LKK ++ D Sbjct: 130 GNYVAENLFT---EDEPVKSVFPALEDALLALGALGYSQKEVDR-IKPKLKKLPEMSADE 185 Query: 196 QI 197 I Sbjct: 186 YI 187 >gi|255020124|ref|ZP_05292194.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC 51756] gi|254970417|gb|EET27909.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC 51756] Length = 191 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 13/184 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G+I + ++ ++V G+ Y + P+ L G TL +R+D L Sbjct: 1 MIAFLRGHILERHPPWLWLEVNGIGYELEMPLSAFFQLPADGAALTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V G+G +VA+ LS + +L ++ + + + IPG+ + Sbjct: 61 YGFRERAERDIFRQLIKVSGIGGKVALACLSGMDVEQLRAALRDGDVRRLTAIPGVGART 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S SV ++ +++ AI+AL +LGY A+ A Sbjct: 121 AERLIVELRDKLAS-GSVGATPVAGDPRQE------------AIAALQSLGYKATDASQA 167 Query: 181 VVSV 184 + + Sbjct: 168 LAGL 171 >gi|315656670|ref|ZP_07909557.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492625|gb|EFU82229.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 194 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI IKG + D + V G+ TL+ L T V+T++ R+D + Sbjct: 1 MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALVP---GTTATVQTYLVVREDSL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S +R F L V+G+G ++ + LS ++ L +++ + + IPG+ Sbjct: 58 TLYGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVVNSDVAALQGIPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ E+ K +S V + + + + AL NLGY Q AT Sbjct: 118 KSAERMILEIGDKLGGVSGVAASTGATAGFNASTV----------VEALSNLGYNQALAT 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 AV +V + +D +R AL+ Sbjct: 168 EAVNAV-----SASDAPTALREALK 187 >gi|226355827|ref|YP_002785567.1| Holliday junction DNA helicase RuvA [Deinococcus deserti VCD115] gi|226317817|gb|ACO45813.1| putative Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus deserti VCD115] Length = 202 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 18/203 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQI 58 +I + G + + E+ +I GV Y + CP TL L G+ + T FV +R+D Sbjct: 4 VIAYLSGVVREVRENSAVIVAGGVGYEVQCPAGTLGKLVVGQNAELSTRFV---VREDAQ 60 Query: 59 RLFGFLSDLDR-QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 LFGF SD D + F L+ V GVG ++ + +LS + + L + ++ + K+++ + G+ Sbjct: 61 LLFGF-SDADSLKLFDLVTGVSGVGPKLGLSLLSAMPVSALAQGLMAGDVKLLSSVSGVG 119 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQ 174 K A R++ EL+ K V + ++ A + P + +AI AL+ LG+ + Sbjct: 120 KKTAERLVLELQNK-------VPEHLAAAGVP-AGTRATPVSSTAGRDAIEALLALGFRE 171 Query: 175 DQATTAVVSVLKKEKNIADDSQI 197 Q V +L + + D+ I Sbjct: 172 AQVRGVVAELLGADPTQSADALI 194 >gi|187917906|ref|YP_001883469.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH] gi|229560005|sp|B2S1L2|RUVA_BORHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119860754|gb|AAX16549.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH] Length = 196 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 15/134 (11%) Query: 52 HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 H+R+D+I+LFGFL+ +R+ F L SV G+G R A+ +LS + E ++I ++ K I+ Sbjct: 51 HLREDEIKLFGFLNVSEREVFEELISVDGIGPRAALRMLSGMKYDEFRDAIEREDVKRIS 110 Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 + GI K+A +I +L+GK + + + EQ ++VN+G Sbjct: 111 TVKGIGNKVAGKIFLKLRGKLVKADELTSSVFKFKDLEQ---------------SIVNMG 155 Query: 172 YGQDQATTAVVSVL 185 + + A+ ++ Sbjct: 156 FDRKLVVAAIKEIM 169 >gi|317009536|gb|ADU80116.1| Holliday junction DNA helicase RuvA [Helicobacter pylori India7] Length = 183 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 7/149 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+ QGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEAQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE 149 A +IM +L G +Q + S V E Sbjct: 120 ADKIMVDLIG------FFIQDETSPVRNE 142 >gi|254410540|ref|ZP_05024319.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC 7420] gi|196182746|gb|EDX77731.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC 7420] Length = 210 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 8/138 (5%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM-- 53 MI +KG + + + ++++V + Y + R LS +IG + V TH+ Sbjct: 1 MISYLKGTVATIQKGNGNRVTLILEVNQIGYEVQI-TRQLSQEVQIGSEQVVQVFTHLQI 59 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+DQ L+GF S +R F L SV G+GA++A+ ++ + LV++I+ N++ +A+ Sbjct: 60 REDQQILYGFASAAERDLFRQLVSVSGIGAQLAIALIDTLGLQNLVQAIVTGNTRTLAKT 119 Query: 114 PGISMKIASRIMTELKGK 131 PG+ K A RI ELK K Sbjct: 120 PGVGSKTAERIALELKTK 137 >gi|260654961|ref|ZP_05860449.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1] gi|260630276|gb|EEX48470.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1] Length = 200 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--I 58 M+ ++G + L +++ G+ + + + L ++G+ ++F++T+++ + Sbjct: 1 MLASLRGTVILLEGSSAVVECGGLGFQVQLTRKAFG-LCRVGE--SVFLQTYLQVSDAGM 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF +RQ F LL +V+GVG ++AM VL ++A E + ++ +SK + +PGI Sbjct: 58 SLFGFADAAERQAFELLTTVKGVGGKLAMTVLQSLSAQETIAAVAAGDSKTLTAVPGIGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A RI EL K S D++ + + I AL +LG+ + Sbjct: 118 KTAERICFELSEKITGSSEWSSADLTAKLQHSDEV----------IEALESLGFDHASSV 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 A + ++ A + I LR Sbjct: 168 RAYQQLCQERGEPASTEEAIFNCLR 192 >gi|222097866|ref|YP_002531923.1| holliday junction DNA helicase ruva [Bacillus cereus Q1] gi|228917058|ref|ZP_04080617.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929466|ref|ZP_04092487.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948135|ref|ZP_04110419.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093493|ref|ZP_04224596.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-42] gi|229123962|ref|ZP_04253154.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 95/8201] gi|229163369|ref|ZP_04291321.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus R309803] gi|229186660|ref|ZP_04313821.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BGSC 6E1] gi|229198549|ref|ZP_04325252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1293] gi|221241924|gb|ACM14634.1| holliday junction DNA helicase [Bacillus cereus Q1] gi|228584934|gb|EEK43049.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1293] gi|228596919|gb|EEK54578.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BGSC 6E1] gi|228620150|gb|EEK77024.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus R309803] gi|228659264|gb|EEL14912.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 95/8201] gi|228689964|gb|EEL43768.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-42] gi|228811493|gb|EEM57830.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830254|gb|EEM75870.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842586|gb|EEM87675.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 197 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D ++++ + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDEERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|229192632|ref|ZP_04319593.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 10876] gi|228590939|gb|EEK48797.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 10876] Length = 197 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D ++ + + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDTERFDENKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|257876215|ref|ZP_05655868.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC20] gi|325567287|ref|ZP_08143954.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus casseliflavus ATCC 12755] gi|257810381|gb|EEV39201.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC20] gi|325158720|gb|EGC70866.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus casseliflavus ATCC 12755] Length = 196 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 24/203 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G + ++ Y++++ G+ Y I S GK+ +++ +R+D L+GF + Sbjct: 7 GKVTDIFPAYIVVETHGIGYQIAFG-NPYSFSGKLNQEVKIYLHQVIREDAHSLYGFATI 65 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +Q F+ L SV G+G + A+ +++ T L+ ++ + + + PG+ K A +++ Sbjct: 66 EGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKTAQQMIL 125 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVL 185 +LKGK L V +E S+ + A++ A+ AL LGY + + V Sbjct: 126 DLKGKVAEL----------VGEEAIVPLSVATTALDEAMEALKALGYSEKE-------VK 168 Query: 186 KKEKNIADDS-----QIIRLALR 203 K EK +A ++ + +R ALR Sbjct: 169 KAEKQLAANTTKSTDEYLREALR 191 >gi|317057206|ref|YP_004105673.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7] gi|315449475|gb|ADU23039.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7] Length = 199 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y TL + + TL+ +R++ + L Sbjct: 1 MIYSVRGKLIHTESELAVVECSGVGYACKTTFYTLQKIAGESE-VTLYTYLAVRENDVDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F +L +V GVG + A+ +LS T ++ ++ + K + + GI K Sbjct: 60 FGFSSQEELRCFKMLITVSGVGPKAALSILSSNTPSQFALTVATGDFKSLTKSKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQDQAT 178 A RI+ ELK K + +++ V + ++P AI+ALV LGY + +A Sbjct: 120 AQRIVLELKDK------IAKENTISVRGGETIASAVPRGGALDEAITALVVLGYSEGEAA 173 Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202 A L + A ++I+ AL Sbjct: 174 QA----LAGAEPTATVEELIKTAL 193 >gi|261417028|ref|YP_003250711.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373484|gb|ACX76229.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 202 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + +V+++ GV Y + T L + G L +R+D + L Sbjct: 1 MIERIRGVLVQKSPTFVVVECAGVGYGVNISAFTAGKLPEEGAEVILHTNLVVREDSMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ F++L V GVG ++A +LS T +L+ I N + +I G+ K Sbjct: 61 FGFADTTEKNLFLMLLEVNGVGPKLAQRILSGSTPADLLNMIASDNKSALGKIKGLGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ++ LK KA S+++Q + ++ + A+ AL LG A A Sbjct: 121 CEQMTLTLKEKA---SNMLQALGDVEGSGITSVGALTGAKLEAVLALHTLGVKDPAAEKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 VV ++ + AD + +I AL+ Sbjct: 178 VVKAVEVLGDGADAAALIPEALK 200 >gi|229135245|ref|ZP_04264043.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST196] gi|228648223|gb|EEL04260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST196] Length = 197 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 88/176 (50%), Gaps = 8/176 (4%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAI---NAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV + + + ++ A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVVPELLKE 177 >gi|327403822|ref|YP_004344660.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis DSM 16823] gi|327319330|gb|AEA43822.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis DSM 16823] Length = 192 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 98/203 (48%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + ++I+ GV Y + + T S + + + + +R+D L Sbjct: 1 MITHLNGRLIEKNPTNLIIECGGVGYFVKISLNTFSAISST-ESVKVLTQQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV G+G A+ +LS ++ +E+ +I ++ + I I GI K Sbjct: 60 YGFATSEERDIFNFLLSVSGIGPNTAILMLSSMSPSEIANAIQTEDVRSIQAIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + ++ N +A++AL++LG+ + A A Sbjct: 120 AQRVIIDLKDKMLKVEWTESTNIFAGNNTN---------RFDALTALISLGFDKKNAEKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + + ++++ D +I+ AL+ Sbjct: 171 IEKIATGDESVED---LIKGALK 190 >gi|221194792|ref|ZP_03567849.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626] gi|221185696|gb|EEE18086.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626] Length = 211 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + + V++DV GV Y + T + L + G+ T+ +R+D + Sbjct: 1 MIVQLTGTLLSVSPSLVVLDVNGVGYELGVSANTAASLPQAGEAGVTVLTRMVVREDAME 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L+++ G+GA++A+ VLS T +L + ++ + Q+ G+ K Sbjct: 61 LYGFSSREERALFDRLRAISGIGAKLALSVLSTFTPQQLASVVASEDVTRMTQVAGLGKK 120 Query: 120 IASRIMTEL 128 A R++ EL Sbjct: 121 KAGRMLVEL 129 >gi|328881167|emb|CCA54406.1| Holliday junction DNA helicase RuvA [Streptomyces venezuelae ATCC 10712] Length = 210 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV + C TL+ L +IG L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGVGMAVQCTPGTLAGL-RIGADARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRVAVATGDEKALTAVPGIGKKG 119 Query: 121 A 121 A Sbjct: 120 A 120 >gi|229062116|ref|ZP_04199441.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH603] gi|228717268|gb|EEL68943.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH603] Length = 197 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D + ++ + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDTESFDAKKGSSVELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|51598286|ref|YP_072474.1| Holliday junction DNA helicase RuvA [Borrelia garinii PBi] gi|81610281|sp|Q662Y9|RUVA_BORGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|51572857|gb|AAU06882.1| Holliday junction DNA helicase [Borrelia garinii PBi] Length = 196 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 2/99 (2%) Query: 37 CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL K+ D LF + R+++++LFGFL+ +R+ F L V G+G R A+ VLS I Sbjct: 34 CLANFKLSDKVELFTYLYARENELKLFGFLNSDERETFKSLIGVSGIGPRAALRVLSNIR 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 + E+I ++ +++++I GI K+A ++ L+GK + Sbjct: 94 YNDFKEAIDREDVELVSKIKGIGKKMAGKMFLHLQGKLL 132 >gi|1620916|emb|CAA70096.1| specificity factor of RuvAB helicase [Borrelia burgdorferi] Length = 178 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 37 CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL + D LF + R+++++LFGFL+ +R+ F L V GVG R A+ VLS I Sbjct: 15 CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRAALRVLSNIR 74 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 E E+I ++ +++++I GI K+A ++ L+GK + S + + + + I Sbjct: 75 YNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 134 Query: 155 SM 156 SM Sbjct: 135 SM 136 >gi|293567841|ref|ZP_06679182.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071] gi|291589426|gb|EFF21233.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071] Length = 200 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 12/190 (6%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R S K+ ++V +R+D L+GF S ++Q F+ Sbjct: 16 YIVVETNGIGYQIALGNPYRYSS---KLNQKIKIYVHQVIREDAHLLYGFDSLEEKQLFL 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L SV G+G + A+ +++ + L++++ + + + PG+ K A +++ +LKGK Sbjct: 73 RLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFG 132 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 LS + S ++ + S A+ A+SA LGY D+ V LKK N Sbjct: 133 ELS--IDTPFSLFDEANTKDATALSEAMEALSA---LGYS-DREIKRVEKQLKKVDNQTT 186 Query: 194 DSQIIRLALR 203 D + +R AL+ Sbjct: 187 D-EYLRQALK 195 >gi|319790481|ref|YP_004152114.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans HB-1] gi|317114983|gb|ADU97473.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans HB-1] Length = 190 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59 M+ + G + G + V + + P R L L + G TL+ E Q+ + Sbjct: 1 MVEAVSGTVSGKGDGAVFLSCGCFTLRLLVPERLLPELHE-GTHVTLYTELLFPQEGAPQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +R+ F L V VG+R+A+ VLS + E V+ + ++ + ++++PG+ K Sbjct: 60 LFGFKTREERELFRQLMKVPKVGSRLALAVLSVFSPEEFVKVLEGEDVEALSKVPGLGRK 119 Query: 120 IASRIMTELKGKAIS 134 ++ R++TELKGK +S Sbjct: 120 LSRRLITELKGKLVS 134 >gi|228910257|ref|ZP_04074075.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 200] gi|228849421|gb|EEM94257.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 200] Length = 197 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V+++ ++ K + + PG+ K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAVEHEDEKFLVKFPGVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D ++++ + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|284929265|ref|YP_003421787.1| Holliday junction DNA helicase subunit RuvA [cyanobacterium UCYN-A] gi|284809709|gb|ADB95406.1| Holliday junction DNA helicase, RuvA subunit [cyanobacterium UCYN-A] Length = 213 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 96/182 (52%), Gaps = 13/182 (7%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMR 54 MI KG+ + +D ++++V + Y I + L K D+ +F+ R Sbjct: 1 MINYFKGSFVEILKDTKNKIVLIMEVNQIGYEIQITSKLEEKLSNKKSDYIQVFIHLQTR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +D L+GF++ L+++ F L ++ G+GA++++ +L+ + + +L++++ N K++++ P Sbjct: 61 EDSQILYGFINKLEQELFRQLININGIGAQLSITLLNTLGSEKLIKAVCSGNVKMLSESP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVNLGYG 173 G+ K A RI+ EL K + L + K + H C+ + I S+L+ LGY Sbjct: 121 GVGKKTAERIILELNSKLLKLIEAFEI------KVELHSCNSSENTLEDITSSLLLLGYD 174 Query: 174 QD 175 ++ Sbjct: 175 RE 176 >gi|296127494|ref|YP_003634746.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM 12563] gi|296019310|gb|ADG72547.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM 12563] Length = 194 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 109/211 (51%), Gaps = 22/211 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+GN++ + E + + GV Y I + L K D L+ + ++D + L Sbjct: 1 MFAFIEGNVQIISEGVIALVCNGVGYEIIVS-KKLEV--KNDDKIRLYTQLIHKEDAMIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +++ F L + GVG ++AM +LS + +L+ + ++ ++ ++ G+ +K Sbjct: 58 YGFLTREEKKMFSTLIAASGVGPKLAMEILSTYSINDLMHILFNKDINLLKKVQGMGLKK 117 Query: 121 ASRIMTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A +++ EL+ K I++SS Q+ N ++ + I AL++LG+ ++ Sbjct: 118 AEKLLFELRDKIEKIDINISSSSVQN---YNDNESDV----------IKALISLGFSNNE 164 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 A A+ S+ K+ A+D +I ALR +S Sbjct: 165 AVKALSSIENKDNMSAED--LISNALRNLSS 193 >gi|325971233|ref|YP_004247424.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp. Buddy] gi|324026471|gb|ADY13230.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp. Buddy] Length = 210 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 100/195 (51%), Gaps = 17/195 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG-------DFCTLFVETHM 53 MI I G++ + + V++ V Y++ +T S L + T+ + Sbjct: 1 MINAIIGDVVRVMDGEVILRAGYVEYMLSVSAQTASKLSNLSLEERRAVRLLTVLIH--- 57 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+D + LFGF + +R+ F+ LQ+V G+G++ A+ +LS I+ L +++ N K+++ I Sbjct: 58 REDSMSLFGFYDEAEREAFLQLQTVSGIGSKQALKILSGISVRNLAQALDTGNLKLLSSI 117 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K +++ L+ V + + S N +++ S S + I+ALV++GY Sbjct: 118 PGIGPKTGQKMILALRDVL-----VFEDEKSKTNGQRSQ--SKASQWSDIITALVDMGYD 170 Query: 174 QDQATTAVVSVLKKE 188 + + + S+ ++E Sbjct: 171 RRKVEEVIDSLSEQE 185 >gi|225552109|ref|ZP_03773049.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1] gi|225371107|gb|EEH00537.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1] Length = 197 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 37 CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL + D LF + R+++++LFGFL+ +R+ F L V GVG R A+ VLS I Sbjct: 34 CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRAALRVLSNIR 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 E E+I ++ +++++I GI K+A ++ L+GK + S + + + + I Sbjct: 94 YNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 153 Query: 155 SM 156 SM Sbjct: 154 SM 155 >gi|310778214|ref|YP_003966547.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus DSM 2926] gi|309747537|gb|ADO82199.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus DSM 2926] Length = 199 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +Y ++D+ G+ Y + ++T L +G+ L++ ++R+D +L GF + +R F + Sbjct: 15 EYAVVDINGIGYKVNISLKTYEKLV-LGEKTKLYIYNYIREDMFKLIGFAEEKERNLFEI 73 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L +V G+G +A+ +LS ++ + + ++ K++ ++P + +K A +++ ++K K Sbjct: 74 LINVNGIGVSLALAILSTFDVEDMRDIVSREDVKLLTKVPKLGIKKAQKLIVDVKDK 130 >gi|216264161|ref|ZP_03436153.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a] gi|221217494|ref|ZP_03588965.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a] gi|224532548|ref|ZP_03673171.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23] gi|224533942|ref|ZP_03674527.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a] gi|225549276|ref|ZP_03770249.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a] gi|225549747|ref|ZP_03770712.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a] gi|226321147|ref|ZP_03796688.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805] gi|215980634|gb|EEC21441.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a] gi|221192772|gb|EEE18988.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a] gi|224512491|gb|EEF82869.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23] gi|224512945|gb|EEF83311.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a] gi|225369707|gb|EEG99155.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a] gi|225370134|gb|EEG99574.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a] gi|226233439|gb|EEH32179.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805] gi|312148088|gb|ADQ30747.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi JD1] gi|312149630|gb|ADQ29701.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi N40] Length = 197 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 37 CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL + D LF + R+++++LFGFL+ +R+ F L V GVG R A+ VLS I Sbjct: 34 CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRAALRVLSNIR 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 E E+I ++ +++++I GI K+A ++ L+GK + S + + + + I Sbjct: 94 YNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 153 Query: 155 SM 156 SM Sbjct: 154 SM 155 >gi|219684886|ref|ZP_03539828.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr] gi|219671831|gb|EED28886.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr] Length = 196 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 2/99 (2%) Query: 37 CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL K+ D LF + R+++++LFGFL+ +R+ F L V G+G R A+ VLS I Sbjct: 34 CLANFKLSDKVELFTYLYARENELKLFGFLNSDEREIFKSLIGVSGIGPRAALRVLSNIR 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 E ++I ++ +++++I GI K+A ++ L+GK + Sbjct: 94 YNEFKDAIDREDVELVSKIKGIGKKMAGKMFLHLQGKLL 132 >gi|15594369|ref|NP_212157.1| Holliday junction DNA helicase RuvA [Borrelia burgdorferi B31] gi|195941763|ref|ZP_03087145.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi 80a] gi|218249661|ref|YP_002374557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7] gi|226322062|ref|ZP_03797587.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26] gi|3914937|sp|P70827|RUVA_BORBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725436|sp|B7J0W2|RUVA_BORBZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2687899|gb|AAC66409.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi B31] gi|218164849|gb|ACK74910.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7] gi|226232652|gb|EEH31406.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26] Length = 197 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 37 CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL + D LF + R+++++LFGFL+ +R+ F L V GVG R A+ VLS I Sbjct: 34 CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRAALRVLSNIR 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 E E+I ++ +++++I GI K+A ++ L+GK + S + + + + I Sbjct: 94 YNEFKEAIDKEDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 153 Query: 155 SM 156 SM Sbjct: 154 SM 155 >gi|322412854|gb|EFY03762.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 197 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + V Q+ S K Q S AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVE----VPQETS---KAQPSTSSNNDELDEAIEALLALGY 164 >gi|227524332|ref|ZP_03954381.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC 8290] gi|227088563|gb|EEI23875.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC 8290] Length = 198 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 13/201 (6%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62 + G I + Y+++ V G+ Y+IY P R K ++V + I L+G Sbjct: 5 MDGQIVDITPAYIVLLVNGIGYLIYTADPYRFNVDQNKT---IRVYVYQSVSDSAILLYG 61 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 F D++ F L +V G+G + A+ +L+ + LV +I ++ K + + PG+ K A Sbjct: 62 FYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVLAISNKDVKFLTKFPGVGKKTAQ 121 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 +I+ +L+GK LS +VQ EQ+ +AISAL LGY Q A+ Sbjct: 122 QIILDLQGKVGDLSQIVQARSGQSASEQSDELR------DAISALEALGYSAKQ-IDAIR 174 Query: 183 SVLKKEKNIADDSQIIRLALR 203 L K+K + D + + L L+ Sbjct: 175 LELGKDKALTTD-EYLSLGLK 194 >gi|293395808|ref|ZP_06640090.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] gi|291421745|gb|EFE94992.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] Length = 127 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 65/122 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VL++ GV Y ++ P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITALVKLPGVGKKP 120 Query: 121 AS 122 + Sbjct: 121 PN 122 >gi|224372976|ref|YP_002607348.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH] gi|254767379|sp|B9L9P0|RUVA_NAUPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|223589102|gb|ACM92838.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH] Length = 184 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 26/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++GNI +L+DV V Y + + T S + G F ++ +++++ L Sbjct: 1 MIAALRGNIFEKDGGKILLDVNNVIYELNVSMITFSSVNDKGLF---YITEIIKENEYTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F L + GVG +VA+ + S T ++ I + + +IPGI K Sbjct: 58 YGFADKNEKKLFDSLIKLNGVGPKVALAICSTYTPQTFMDIIANHDINALKKIPGIGPKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ E+ + V +EQ + + A+SAL +LG+ ++ A Sbjct: 118 AKRILMEM------------GEFEVVFEEQNPVFNQ------ALSALESLGFNKNDIVKA 159 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + K N+ + I+LAL+ +S Sbjct: 160 LNGI--KSDNL---EETIKLALKKLS 180 >gi|254383613|ref|ZP_04998963.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp. Mg1] gi|194342508|gb|EDX23474.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp. Mg1] Length = 210 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV + C T++ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTLAVIEVGGVGMAVQCTPNTIAAL-RVGEPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L + L ++ + + + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRLAVESGDERALTAVPGIGKKG 119 Query: 121 A 121 A Sbjct: 120 A 120 >gi|300172987|ref|YP_003772153.1| Holliday junction DNA Helicase RuvA [Leuconostoc gasicomitatum LMG 18811] gi|299887366|emb|CBL91334.1| holliday junction DNA helicase RuvA [Leuconostoc gasicomitatum LMG 18811] Length = 196 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 18/177 (10%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I +Y Y++I D GV Y ++ P R + ++VE +R+++ Sbjct: 1 MYEYINGLITNIYPAYLVICDRSGVGYKLFVANPYRFEQNVE-----SHVYVEQIVRENE 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I ++GF+ + ++ F L +V G+G + A+ +L+ + LV ++ ++ + Q PG+ Sbjct: 56 ITMYGFIDENEKILFNKLLNVSGIGPKSALAILASDDSVGLVNAVANDDATYLTQFPGVG 115 Query: 118 MKIASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 K A +I+ +LKGK L++ V +S N QA +A+ AL +LGY Sbjct: 116 KKTAQQIVLDLKGKLDDLAASVGMTTPVSQPNSNQA--------LSDALEALNSLGY 164 >gi|291533989|emb|CBL07102.1| Holliday junction DNA helicase subunit RuvA [Megamonas hypermegale ART12/1] Length = 161 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + D+ IDV GV Y ++ T + L K+ + LF +R+D + L Sbjct: 1 MIGYLQGKVTYIASDFCFIDVHGVGYRVFISTSTRAQL-KMNEEIKLFTYLSVREDAMLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ L+ F L SV +G + +G+LS +++ +L+ +I + ++ PGI K Sbjct: 60 YGFINQLEYDVFCKLISVSKIGPKAGLGLLSSLSSEKLIWAIQNKQVSLLTNAPGIGKKT 119 Query: 121 ASRIMTELKGKAISLS 136 A RI+ ELK K L+ Sbjct: 120 AERIVLELKDKLTELN 135 >gi|260583653|ref|ZP_05851401.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC 700633] gi|260158279|gb|EEW93347.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC 700633] Length = 198 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 93/180 (51%), Gaps = 11/180 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYC-PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M +KG + + Y++++ G+ Y I++ P R K+ + + ++ +R+D I Sbjct: 1 MYEYLKGELVAIQPTYIVVENHGIGYQIMFANPYR---IQLKLNEVIRVELQQIVREDSI 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFLSD +++ F L SV G+G + A+ +L+ ++++ N + + PG+ Sbjct: 58 TLYGFLSDEEKELFQKLISVSGIGPKSAVSILANDDVNGFIQAVESGNITYLTKFPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A +I+ +LKGK ++ VV++ + V + I + A AL+ LGY + T Sbjct: 118 KTAQQIVLDLKGKFTNI--VVEEVATPVVETATGIKQLEE----AREALLGLGYSAKEIT 171 >gi|116490641|ref|YP_810185.1| Holliday junction resolvasome, DNA-binding subunit [Oenococcus oeni PSU-1] gi|122277175|sp|Q04GA2|RUVA_OENOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116091366|gb|ABJ56520.1| Holliday junction DNA helicase subunit RuvA [Oenococcus oeni PSU-1] Length = 194 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 11/157 (7%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YV IDV G+ + ++ P D T+F E +R +QI L+GF + +R F L Sbjct: 16 YVGIDVNGIGFRVFTPNPYEYNQN---DQTTIFTEQIVRDNQISLYGFKTVKERNLFQKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 +V G+G + A+ +++ L+ ++ K + + PGI K A +I+ +LKGK Sbjct: 73 LNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDF 132 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 S + M + + A + +A++ALV LG+ Sbjct: 133 SKNIAP-MKNLLENSAELD-------DALAALVALGF 161 >gi|262197092|ref|YP_003268301.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM 14365] gi|262080439|gb|ACY16408.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM 14365] Length = 210 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 1/132 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + V+++ GV Y + I TL L G+ TL + TH + ++ L Sbjct: 1 MIGRLRGTLVEQEGSMVIVECGGVGYEVTVSIHTLQSLPAEGEPVTLRIFTHALESRVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT-ELVESIILQNSKVIAQIPGISMK 119 +GF S L+R F LL +V+ VG A+G+LS + E+ E I + + ++ G+ K Sbjct: 61 YGFGSTLERDLFDLLITVKKVGPSSAVGILSAGSGPAEIAEMIANGETSSLTRLRGVGKK 120 Query: 120 IASRIMTELKGK 131 A ++ EL+ K Sbjct: 121 TAEMLVVELREK 132 >gi|308187172|ref|YP_003931303.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans C9-1] gi|308057682|gb|ADO09854.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans C9-1] Length = 167 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%) Query: 45 CTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104 +F +R+D LFGF S +R F L V GVG ++A+ +LS ++A + V ++ Sbjct: 8 AVIFTHFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEK 67 Query: 105 QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--- 161 + + ++PG+ K A R++ E+K + + + A + PS Sbjct: 68 EEIASLVKLPGVGKKTAERLVVEMKDRFKGMHG------DLFGGDSAFTLTTPSAEPETN 121 Query: 162 ----NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A++ALV+LGY +A+ + V + + AD +IR ALRA Sbjct: 122 DAESEAVAALVSLGYKPQEASRMISKVGRPD---ADCETLIREALRA 165 >gi|90962101|ref|YP_536017.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius UCC118] gi|227891123|ref|ZP_04008928.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC 11741] gi|123391344|sp|Q1WT17|RUVA_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90821295|gb|ABD99934.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118] gi|227866997|gb|EEJ74418.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC 11741] Length = 201 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 10/190 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y+++DV GV Y +Y P + +FV +R + I L+GF + ++Q F+ Sbjct: 16 YIVVDVNGVGYQVYVANPFKYEEDEHAE---QKVFVYQAVRDNDISLYGFKNSSEKQLFL 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L V G+G + A+ +L+ L+ +I + + + PGI K A +I+ +LKGK Sbjct: 73 KLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKTAKQIILDLKGK-- 130 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 LS V ++ + + + + ++ AL LGY + + + K + D Sbjct: 131 -LSDVDSDMLTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRISKKLEKYDGKSTD 189 Query: 194 DSQIIRLALR 203 D +R LR Sbjct: 190 D--YLRQGLR 197 >gi|227488786|ref|ZP_03919102.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091208|gb|EEI26520.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 200 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 15/189 (7%) Query: 18 LIDVQGVCYIIYCPIRTLS--CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +I+ GV Y TL+ LG+ G T V + + + L+GF D +R F L Sbjct: 18 VIECGGVGYEFLATAATLAELPLGEDGRVLTTMV---IGEKVVTLYGFAHDSERTMFSQL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 Q VQG+G ++A+ L+ + +E+ ++ + K + IPG+ ++A+++ L GK L Sbjct: 75 QGVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARMAAKMTAVLDGK---L 131 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + D + A + S + ++ALV LG+ +D A A + +E N D+ Sbjct: 132 DEFI--DSTATTSSAAEPVTGGSETV--VAALVQLGFDEDSANHA--AAWAEESNPGGDT 185 Query: 196 QI-IRLALR 203 +R AL+ Sbjct: 186 GTNLRHALQ 194 >gi|325001439|ref|ZP_08122551.1| Holliday junction DNA helicase RuvA [Pseudonocardia sp. P1] Length = 173 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 34 TLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 T S LG + G+ L +R++ + LFGF +R+ F+LLQ+V G+G R+A+ ++ Sbjct: 2 TPSTLGGLRRGEETRLATTLVVREESLTLFGFADTEERELFLLLQTVSGIGPRLALATIA 61 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 + L ++ + V+ +IPG+ K A R++ EL+ K V + + Sbjct: 62 VLEPDTLRRALADGDLAVLTRIPGVGRKSAERLVVELRDK-------VTAPAAAPAGATS 114 Query: 152 HICSMPSFAINA--ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 P + + AL+ LG+ Q A AV VL ++ + + S ++R AL ++ Sbjct: 115 AAAPSPVLGVREQVVEALLGLGFPQRPAEQAVDGVLAEQPDTS-ASGLLRTALSSL 169 >gi|152976839|ref|YP_001376356.1| Holliday junction DNA helicase motor protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189045741|sp|A7GTA3|RUVA_BACCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152025591|gb|ABS23361.1| Holliday junction DNA helicase RuvA [Bacillus cytotoxicus NVH 391-98] Length = 205 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 2/187 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +Y+++D G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYIVLDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ + + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIENEDERFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + V D+ + + A+ AL LGY + + Sbjct: 119 ARQMILDLKGKLADVVPDVFVDLFSDEERFDEKKGSSTELDEALEALRALGYAEREINRV 178 Query: 181 VVSVLKK 187 + +LK+ Sbjct: 179 LPELLKE 185 >gi|315638160|ref|ZP_07893342.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter upsaliensis JV21] gi|315481696|gb|EFU72318.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter upsaliensis JV21] Length = 183 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 6/141 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQ 57 M+ I+G I + ++ Q GV Y IY +L C K+ C L + +++D Sbjct: 1 MVVAIEGIITKKEPTFAVLKTQNGVSYGIYI---SLFCAAKLELHTKCELLITQIIKEDS 57 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 +L+GFL +++ F +L V G+GA AM + S + + +++ L + V ++PGI Sbjct: 58 HKLYGFLEKDEQKIFEMLLKVNGIGATTAMAICSSLDSNAFYKALSLNDESVFKKVPGIG 117 Query: 118 MKIASRIMTELKGKAISLSSV 138 K A RI+ EL ++ ++V Sbjct: 118 AKSAKRIIVELSDSKMAFNNV 138 >gi|126654019|ref|ZP_01725852.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905] gi|126589493|gb|EAZ83637.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905] Length = 206 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 26/188 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56 M +KG I + +Y++++ QG+ + + P RT + +I +V H+R+D Sbjct: 1 MYDYLKGLITRITPEYIVLEQQGIGWQLNTPNPFAFRTSALEQQI------YVHLHVRED 54 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + R+ F L V G+G + A+ +L+ +++ +I ++ + + PG+ Sbjct: 55 AQMLYGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGV 114 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--------AISALV 168 K A +++ +LKGK SL ++ + E +P F +N AI AL+ Sbjct: 115 GKKTARQMILDLKGKLGSLLETIE--LPSTEDE------LPLFGVNAYKHELEEAILALM 166 Query: 169 NLGYGQDQ 176 LGY + + Sbjct: 167 ALGYSEKE 174 >gi|113952944|ref|YP_730832.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311] gi|123031696|sp|Q0I9P0|RUVA_SYNS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113880295|gb|ABI45253.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311] Length = 219 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 11/216 (5%) Query: 1 MIGKIKGN-IEGLYE---DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G IE + ++I GV Y + R L L G CT+++ R D Sbjct: 1 MIGWLRGERIEHWSQGGRQGLVIACAGVGYEVQLASRYLQPL-SAGATCTVWIHQVQRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F +L SV G+G +V + +L +A EL+E+II + + + Q G+ Sbjct: 60 GSSLFGFPDRRERDLFRVLISVNGIGPQVGLALLESCSAAELIEAIIDGDLRRLTQAQGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVV---QQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGY 172 + A R+ EL+ + + S+ D+S V++ + + + L LGY Sbjct: 120 GKRTAERLAVELRDRLGAWSAEKNSDHSDLSLVDRSDLKSLPIEPDPLQDLQLTLSTLGY 179 Query: 173 GQDQATTAVVSVLKKEKNIA--DDSQIIRLALRAIS 206 + A+ +V E+ A D +R +LR ++ Sbjct: 180 EDLEIRRAMRAVATGEEVPAANDGDGWLRASLRWLN 215 >gi|227542217|ref|ZP_03972266.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182046|gb|EEI63018.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 200 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 15/189 (7%) Query: 18 LIDVQGVCYIIYCPIRTLS--CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 +I+ GV Y TL+ LG+ G T V + + + L+GF D +R F L Sbjct: 18 VIECGGVGYEFLATAATLAELPLGEDGRVLTTMV---IGEKVVTLYGFAHDSERTMFSQL 74 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 Q VQG+G ++A+ L+ + +E+ ++ + K + IPG+ ++A+++ L GK L Sbjct: 75 QDVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARMAAKMTAVLDGK---L 131 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + D + A + S + ++ALV LG+ +D A A + +E N D+ Sbjct: 132 DEFI--DSTATTSSAAEPVTGGSETV--VAALVQLGFDEDSANHA--AAWAEESNPGGDT 185 Query: 196 QI-IRLALR 203 +R AL+ Sbjct: 186 GTNLRHALQ 194 >gi|67922170|ref|ZP_00515685.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501] gi|67856070|gb|EAM51314.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501] Length = 210 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 9/140 (6%) Query: 47 LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106 +F +++DQ L+GF + +R+ F L SV G+GA+ A+ ++ + ELV++I+ N Sbjct: 53 VFTYLQIKEDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGN 112 Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAI 164 + ++Q PG+ K A RI EL+ K + Q V A +MPS I + Sbjct: 113 IRTLSQTPGVGKKTAERIALELRTK-------LSQWRKLVGGTVASSSAMPSLDILEDIE 165 Query: 165 SALVNLGYGQDQATTAVVSV 184 L+ LGY ++ AV ++ Sbjct: 166 MTLLALGYTNEEINKAVSTL 185 >gi|229553780|ref|ZP_04442505.1| crossover junction endoribonuclease subunit A [Lactobacillus rhamnosus LMS2-1] gi|229312854|gb|EEN78827.1| crossover junction endoribonuclease subunit A [Lactobacillus rhamnosus LMS2-1] Length = 212 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 73/133 (54%), Gaps = 7/133 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M +G I+ + Y++IDV G+ + ++ P + G ++V+ +R++ Sbjct: 15 MYEYFEGTIQAVTPAYIVIDVNGIGFRLLVANPYDF-----EAGKQTRIYVQLIIRENDQ 69 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + D++ F L SV G+G + A+ +L+ +++ L +I + K + + PGI Sbjct: 70 TLYGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGK 129 Query: 119 KIASRIMTELKGK 131 K A++I+ +LKGK Sbjct: 130 KTAAQIILDLKGK 142 >gi|111114845|ref|YP_709463.1| Holliday junction DNA helicase RuvA [Borrelia afzelii PKo] gi|216264081|ref|ZP_03436075.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1] gi|123047085|sp|Q0SPE1|RUVA_BORAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110890119|gb|ABH01287.1| Holliday junction DNA helicase [Borrelia afzelii PKo] gi|215980125|gb|EEC20947.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1] Length = 196 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 2/99 (2%) Query: 37 CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL K+ D LF + ++++++LFGFL+ +R+ F L V G+G R A+ VLS I Sbjct: 34 CLANFKLLDKVELFTYLYTKENELKLFGFLNSDERETFKSLIGVSGIGPRAALRVLSNIR 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 E ++I ++ ++IA+I GI K+A ++ L+GK + Sbjct: 94 YNEFKDAIDREDIELIAKIKGIGKKMAGKMFLHLQGKLL 132 >gi|225851116|ref|YP_002731350.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1] gi|225645836|gb|ACO04022.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1] Length = 179 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 30/206 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ +D +ID+ V P + D +F+E ++ D++ L Sbjct: 1 MIEFLKGKIKHKKDDIYIIDLGTVALRFRSP-------SDLKDQSVVFIEMFIKDDRVEL 53 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L S+ GVG + A+ +L + E + ++ + G+ K Sbjct: 54 YGFKTPEEREIFNRLLSINGVGVKHALSILRSFSPERFFEIVENRDITTLTTAQGVGKKT 113 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+GK + + + +D+ + AL LG+ + + + Sbjct: 114 AQRIVLELQGKLDFIENELLKDL--------------------VDALTGLGFDKKRVLSV 153 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 VLK+ N+ + ++LAL+ ++ Sbjct: 154 AKDVLKETDNL---EKALKLALQKLA 176 >gi|315636187|ref|ZP_07891441.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter butzleri JV22] gi|315479548|gb|EFU70227.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter butzleri JV22] Length = 185 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 23/169 (13%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 ++V GV Y ++ +L+C KI D L + +R+D L+GFL +++ F + Sbjct: 19 VNVNGVIYEVFV---SLNCSSKIVSDDVKLEITHIIREDAQSLYGFLDSNEKKLFDTVIK 75 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 + GVG +VA+ + S T T + + + ++ ++PGI K ASRI+ EL G I Sbjct: 76 INGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKGASRILVELSGFIID--- 132 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 N E S S A+ A AL +LG+ +D V SVLK Sbjct: 133 --------SNDE----TSGSSSALEAALALESLGFKKD----LVSSVLK 165 >gi|199598072|ref|ZP_03211495.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus rhamnosus HN001] gi|258507747|ref|YP_003170498.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] gi|258538937|ref|YP_003173436.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc 705] gi|84627155|gb|ABC59820.1| RuvA [Lactobacillus rhamnosus GG] gi|199590998|gb|EDY99081.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus rhamnosus HN001] gi|257147674|emb|CAR86647.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] gi|257150613|emb|CAR89585.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc 705] gi|259649095|dbj|BAI41257.1| holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] Length = 198 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 73/133 (54%), Gaps = 7/133 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M +G I+ + Y++IDV G+ + ++ P + G ++V+ +R++ Sbjct: 1 MYEYFEGTIQAVTPAYIVIDVNGIGFRLLVANPYDF-----EAGKQTRIYVQLIIRENDQ 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + D++ F L SV G+G + A+ +L+ +++ L +I + K + + PGI Sbjct: 56 TLYGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGK 115 Query: 119 KIASRIMTELKGK 131 K A++I+ +LKGK Sbjct: 116 KTAAQIILDLKGK 128 >gi|311894864|dbj|BAJ27272.1| putative Holliday junction ATP-dependent DNA helicase RuvA [Kitasatospora setae KM-6054] Length = 203 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 18/163 (11%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 C TL+ L ++G+ L +R+D + LFGF+ D +R F +LQ+ GVG ++A + Sbjct: 30 CTPATLATL-RVGETARLATSLVVREDSLTLFGFVDDDERATFEVLQAAPGVGPKLAQAI 88 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-AISLSSVVQQDMSCVNK 148 L + L +I + K + +PGI A++++ E K K SV Q Sbjct: 89 LGTHSPEALRVAIAGGDEKALIAVPGIGKAKAAKLLLEYKDKLGAPHGSVPAQKPVAAGP 148 Query: 149 ----EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 EQ H +ALV LGY +A AV V + Sbjct: 149 APWHEQLH------------AALVGLGYAPREAEEAVARVTPE 179 >gi|298346872|ref|YP_003719559.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii ATCC 43063] gi|304389423|ref|ZP_07371386.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236933|gb|ADI68065.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii ATCC 43063] gi|304327233|gb|EFL94468.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 194 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI IKG + D + V G+ TL+ L T V+T++ R+D + Sbjct: 1 MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLATLVP---GTTATVQTYLVVREDSL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S +R F L V+G+G ++ + LS ++ L ++ + + IPG+ Sbjct: 58 TLYGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ E+ K +S V + + + + AL NLGY Q AT Sbjct: 118 KSAERMILEIGDKLGGVSGVAASTGATAGFNASTV----------VEALSNLGYNQALAT 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 AV +V + +D +R AL+ Sbjct: 168 EAVNAV-----SASDAPTALREALK 187 >gi|257878807|ref|ZP_05658460.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,230,933] gi|257881445|ref|ZP_05661098.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,502] gi|257885716|ref|ZP_05665369.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,501] gi|257890666|ref|ZP_05670319.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,410] gi|257899427|ref|ZP_05679080.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15] gi|258615122|ref|ZP_05712892.1| Holliday junction DNA helicase RuvA [Enterococcus faecium DO] gi|261207080|ref|ZP_05921769.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6] gi|289565918|ref|ZP_06446358.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF] gi|293556856|ref|ZP_06675417.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039] gi|293563770|ref|ZP_06678209.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162] gi|293570773|ref|ZP_06681823.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980] gi|294614616|ref|ZP_06694520.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636] gi|294618498|ref|ZP_06698062.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679] gi|294621205|ref|ZP_06700390.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317] gi|314938831|ref|ZP_07846102.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a04] gi|314943637|ref|ZP_07850391.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C] gi|314948716|ref|ZP_07852089.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082] gi|314952166|ref|ZP_07855184.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A] gi|314991860|ref|ZP_07857317.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B] gi|314996573|ref|ZP_07861608.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a01] gi|257813035|gb|EEV41793.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,230,933] gi|257817103|gb|EEV44431.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,502] gi|257821572|gb|EEV48702.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,501] gi|257827026|gb|EEV53652.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,410] gi|257837339|gb|EEV62413.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15] gi|260078708|gb|EEW66410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6] gi|289162291|gb|EFD10151.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF] gi|291592518|gb|EFF24123.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636] gi|291595255|gb|EFF26584.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679] gi|291599201|gb|EFF30233.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317] gi|291600940|gb|EFF31231.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039] gi|291604251|gb|EFF33746.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162] gi|291609245|gb|EFF38517.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980] gi|313589262|gb|EFR68107.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a01] gi|313593565|gb|EFR72410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B] gi|313595698|gb|EFR74543.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A] gi|313597674|gb|EFR76519.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C] gi|313641842|gb|EFS06422.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a04] gi|313644888|gb|EFS09468.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082] Length = 200 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 12/190 (6%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R S K+ ++V +R+D L+GF S ++Q F+ Sbjct: 16 YIVVETNGIGYQIALGNPYRYSS---KLNQKIKIYVHQVIREDAHLLYGFDSLEEKQLFL 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L SV G+G + A+ +++ + L++++ + + + PG+ K A +++ +LKGK Sbjct: 73 RLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFG 132 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 LS + S ++ + S A+ A+SA LGY D+ V LK+ N Sbjct: 133 ELS--IDTPFSLFDEANTKDATALSEAMEALSA---LGYS-DREIKRVEKQLKEVDNQTT 186 Query: 194 DSQIIRLALR 203 D + +R AL+ Sbjct: 187 D-EYLRQALK 195 >gi|223889207|ref|ZP_03623796.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b] gi|223885456|gb|EEF56557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b] Length = 197 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 37 CLGK--IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL + D LF + R+++++LFGFL+ +R+ F L V GVG + A+ VLS I Sbjct: 34 CLANFNLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPKAALRVLSNIR 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 E E+I ++ +++++I GI K+A ++ L+GK + S + + + + I Sbjct: 94 YNEFKEAIDKEDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFRFKELEESIV 153 Query: 155 SM 156 SM Sbjct: 154 SM 155 >gi|225619866|ref|YP_002721123.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae WA1] gi|225214685|gb|ACN83419.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae WA1] Length = 192 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 26/212 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G ++ + E + + GV Y I + L K D L+ + R+D + L Sbjct: 1 MFAFIEGKVQIISEGVIALLCNGVGYEIIVS-KKLDV--KNDDNIRLYTKLIHREDAMIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L S GVG ++AM VLS + +L+ + ++ ++ ++ G+ +K Sbjct: 58 YGFLTREEKNMFTTLMSASGVGPKLAMEVLSTYSINDLMHILFNKDINLLKKVSGMGVKK 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGYGQD 175 A +++ EL+ K E+ I PS N I AL++LG+ + Sbjct: 118 AEKLLFELRDKI----------------EKIDINISPSVISNDNESDVIKALISLGFSNN 161 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 +A A+ ++ K+ +D +I ALR +S Sbjct: 162 EAVKALSAIENKDNMTTED--LISNALRNLST 191 >gi|315655417|ref|ZP_07908317.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii ATCC 51333] gi|315490357|gb|EFU79982.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii ATCC 51333] Length = 194 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI IKG + D + V G+ TL+ L T V+T++ R+D + Sbjct: 1 MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALVP---GTTATVQTYLVVREDSL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S +R F L V+G+G ++ + LS ++ L ++ + + IPG+ Sbjct: 58 TLYGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R++ E+ K +S V + + + + AL NLGY Q AT Sbjct: 118 KSAERMILEIGDKLGGVSGVAASTGATAGFNASTV----------VEALSNLGYNQAIAT 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALR 203 AV +V + +D +R AL+ Sbjct: 168 EAVNAV-----SASDAPTALREALK 187 >gi|157164589|ref|YP_001466908.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826] gi|166230532|sp|A7ZDQ0|RUVA_CAMC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|112800289|gb|EAT97633.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826] Length = 184 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 31/193 (16%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 VL GV Y I+ +L C K+ G+ L + +R+D L+GFL +++ F + Sbjct: 18 VLKTNSGVSYGIFI---SLFCSAKLSKGEKVELAITQIIREDANLLYGFLDANEQKMFEM 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L + G+GA AM V S +++ +II ++ +PGI K A RI+ EL Sbjct: 75 LIKLNGIGASTAMAVCSSLSSQAFTNAIISGDADTFKSVPGIGPKTARRIIAEL------ 128 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK--KEKNIA 192 D ++ E S+PS+ A+ AL LG+ +++ +V +L K +N + Sbjct: 129 ------SDTKLISDE-----SVPSYQNEALLALEALGFKREK----IVKILPDCKSENTS 173 Query: 193 DDSQIIRLALRAI 205 D +I+ AL+ + Sbjct: 174 D---LIKEALKKL 183 >gi|86150190|ref|ZP_01068417.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597606|ref|ZP_01100840.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 84-25] gi|218562427|ref|YP_002344206.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20455273|sp|Q9PPC1|RUVA_CAMJE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85839306|gb|EAQ56568.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190198|gb|EAQ94173.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 84-25] gi|112360133|emb|CAL34927.1| putative Holliday junction ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926045|gb|ADC28397.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni IA3902] gi|315928270|gb|EFV07586.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929355|gb|EFV08561.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 305] Length = 183 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 28/185 (15%) Query: 23 GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 G+ Y I+ +L C KI + F+ +++D + +GFL +++ F +L V G Sbjct: 24 GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 VGA AM V S + +++ L + V+ ++PGI K A RI+ EL L + V Sbjct: 81 VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 D S A++AL+ LG+ Q++ + +VS S++I+ Sbjct: 140 DDKS-----------------EALAALLTLGFKQEKIISVLVSA-----QATGTSELIKE 177 Query: 201 ALRAI 205 AL+ + Sbjct: 178 ALKKL 182 >gi|301301358|ref|ZP_07207500.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214787|gb|ADJ79203.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus salivarius CECT 5713] gi|300851018|gb|EFK78760.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 201 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 16/193 (8%) Query: 16 YVLIDVQGVCYIIYC--PIR---TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70 Y+++DV GV Y +Y P + K+ FV +R + I L+GF + ++Q Sbjct: 16 YIVVDVNGVGYQVYVANPFKYEEDEHVEQKV------FVYQAVRDNDISLYGFKNSSEKQ 69 Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F+ L V G+G + A+ +L+ L+ +I + + + PGI K A +I+ +LKG Sbjct: 70 LFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKTAKQIILDLKG 129 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190 K LS V ++ + + + + ++ AL LGY + + + K + Sbjct: 130 K---LSDVDSDMLTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRISKKLEKYDGK 186 Query: 191 IADDSQIIRLALR 203 DD +R LR Sbjct: 187 STDD--YLRQGLR 197 >gi|326693304|ref|ZP_08230309.1| Holliday junction DNA helicase RuvA [Leuconostoc argentinum KCTC 3773] Length = 197 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 8/134 (5%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I +Y Y+++ D GV Y +Y P R + ++VE +R+++ Sbjct: 1 MYEYINGLITNIYPAYIVVCDRSGVGYKLYTANPYRFEQNVE-----SHVYVEQIVRENE 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I L+GF+ + ++ F L +V G+G + A+ +L+ A LV ++ + + Q PG+ Sbjct: 56 IALYGFMDENEKILFNKLLNVSGIGPKSALAILASGDAQGLVNAVANDDVSYLTQFPGVG 115 Query: 118 MKIASRIMTELKGK 131 K A +I+ +LKGK Sbjct: 116 KKTAQQIILDLKGK 129 >gi|289449412|ref|YP_003475227.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183959|gb|ADC90384.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 206 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + V+I+ G+ Y + P L GD +F ++R+D L Sbjct: 1 MYAYINGEYKYVDAGSVVIECNGIGYTLLMP--KLPAW-TAGDKVKVFTYLYVREDIFEL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S F +L V +G ++A+ +L IT + +I+ + K++ I G+ K Sbjct: 58 YGFASQEQLNLFKMLIGVNKIGPKLALQILGSITPEQFALAILRNDLKILTSIKGLGKKN 117 Query: 121 ASRIMTELKG---KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ +L+ KA S S+ ++ + ++ I F+ + AL LGY + Sbjct: 118 AERLVIDLRDKLKKAGSPSAKASTGLTSLETQEDTIDVADDFSA-VVEALTLLGYDYKTS 176 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +V E ++ +Q IRLALR Sbjct: 177 VKQAKAVFDPELDL---NQNIRLALRGFD 202 >gi|118586981|ref|ZP_01544413.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163] gi|118432603|gb|EAV39337.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163] Length = 194 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 11/157 (7%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 YV IDV G+ + ++ P D T+F E +R ++I L+GF + +R F L Sbjct: 16 YVGIDVNGIGFRVFTPNPYEYNQN---DQTTIFTEQIVRDNEISLYGFKTVEERNLFQKL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 +V G+G + A+ +++ L+ ++ K + + PGI K A +I+ +LKGK Sbjct: 73 LNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDF 132 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 S + M + + A + +A++ALV LG+ Sbjct: 133 SKNIAP-MKNLLENSAELD-------DALAALVALGF 161 >gi|227550815|ref|ZP_03980864.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330] gi|257887929|ref|ZP_05667582.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,141,733] gi|257893270|ref|ZP_05672923.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,408] gi|257896453|ref|ZP_05676106.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12] gi|293377530|ref|ZP_06623725.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1] gi|227180052|gb|EEI61024.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330] gi|257823983|gb|EEV50915.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,141,733] gi|257829649|gb|EEV56256.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,408] gi|257833018|gb|EEV59439.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12] gi|292643845|gb|EFF61960.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1] Length = 200 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 12/190 (6%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R S K+ ++V +R+D L+GF S ++Q F+ Sbjct: 16 YIVVETNGIGYQIALGNPYRYSS---KLNQKIKIYVHQVIREDAHLLYGFDSLEEKQLFL 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L SV G+G + A+ +++ + L++++ + + + PG+ K A +++ +LKGK Sbjct: 73 RLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFG 132 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 LS + S ++ + S A+ A+SA LGY D+ V LK+ N Sbjct: 133 ELS--IDTPFSLFDEATTKDATALSEAMEALSA---LGYS-DREIKRVEKQLKEVDNQTT 186 Query: 194 DSQIIRLALR 203 D + +R AL+ Sbjct: 187 D-EYLRQALK 195 >gi|307711076|ref|ZP_07647498.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321] gi|307617038|gb|EFN96216.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321] Length = 197 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G+I ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQINQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V+ S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVEVQASAENQELEE----------AMEAMLALGY 165 >gi|307710210|ref|ZP_07646653.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564] gi|307618972|gb|EFN98105.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564] Length = 197 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI+Y + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLETNGIGYILYVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVSGDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165 >gi|148242421|ref|YP_001227578.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. RCC307] gi|166231453|sp|A5GTL6|RUVA_SYNR3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147850731|emb|CAK28225.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. RCC307] Length = 208 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 22/143 (15%) Query: 49 VETHM--RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106 V TH+ R+D +L+GF + DR F LL SV GVG +VA+G++S + A L++++ ++ Sbjct: 50 VHTHLQQREDGQQLYGFETKADRNLFRLLISVNGVGPQVALGLISGLGAVSLLQAMAAED 109 Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI-- 164 KV+ Q PG+ + A R+ E + S +Q+ + Q S P + + Sbjct: 110 VKVLCQAPGVGKRTAERLSLEWR-------SRLQE------RWQQQGGSTPLRLVEPVAE 156 Query: 165 -----SALVNLGYGQDQATTAVV 182 + L LGYG ++ + AV Sbjct: 157 SRELRATLEALGYGPEEVSAAVA 179 >gi|251783476|ref|YP_002997781.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392108|dbj|BAH82567.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323128222|gb|ADX25519.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 197 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + V Q+ S K + S AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVE----VPQETS---KAKPSTSSNNDQLDEAIEALLALGY 164 >gi|86152153|ref|ZP_01070365.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 260.94] gi|315124320|ref|YP_004066324.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840938|gb|EAQ58188.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 260.94] gi|315018042|gb|ADT66135.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 183 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 28/185 (15%) Query: 23 GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 G+ Y I+ +L C KI + F+ +++D + +GFL +++ F +L V G Sbjct: 24 GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 VGA AM V S + +++ L + V+ ++PGI K A RI+ EL L + V Sbjct: 81 VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 D S A++AL+ LG+ Q++ ++SVL + + S++I+ Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASAQATS-TSELIKE 177 Query: 201 ALRAI 205 AL+ + Sbjct: 178 ALKKL 182 >gi|315640091|ref|ZP_07895215.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus italicus DSM 15952] gi|315484154|gb|EFU74626.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus italicus DSM 15952] Length = 200 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 24/207 (11%) Query: 5 IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62 IKG + + Y++++ G+ Y ++ P R GK + ++V +R+D L+G Sbjct: 5 IKGVVADIQPSYIVLEANGIGYQLVMGNPYR---YSGKKTEEVKVYVHLIVREDAHTLYG 61 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 F ++ F+ L SV G+G + A+ +++ L+ +I + + + PG+ K A Sbjct: 62 FEKLQEKLLFLRLISVSGIGPKSAIAIMANDDHEGLIAAIESDDVTYLTKFPGVGKKTAQ 121 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVNLGYGQDQ 176 +++ +LKGK L+ + ++ +MP F + AISAL LGY ++ Sbjct: 122 QMILDLKGKLGELAGELTGNL-----------AMPLFDTDTSALTEAISALSALGY-SER 169 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 V + LKKE + D + +R AL+ Sbjct: 170 EIKRVETTLKKEGAHSTD-EYLRKALK 195 >gi|170017578|ref|YP_001728497.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20] gi|229560098|sp|B1MZV1|RUVA_LEUCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169804435|gb|ACA83053.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20] Length = 196 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 8/134 (5%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I +Y Y++I D GV Y ++ P R + ++VE +R+++ Sbjct: 1 MYEYINGLITNIYPAYLVIADRSGVGYKLFVANPYRFEQNVE-----SHVYVEQIVRENE 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + L+GF+ + ++ F L +V G+G + A+ +L+ A LV ++ ++ + Q PG+ Sbjct: 56 MTLYGFIDENEKYLFNKLLNVSGIGPKSALAILASDDAAGLVTAVANDDASYLTQFPGVG 115 Query: 118 MKIASRIMTELKGK 131 K A +I+ +LKGK Sbjct: 116 KKTAQQIVLDLKGK 129 >gi|288574886|ref|ZP_06393243.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570627|gb|EFC92184.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio peptidovorans DSM 11002] Length = 202 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 31/218 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G + + ++DV G+ + + R S L +G +L L Sbjct: 1 MLAMVTGTVLDVTTQMAVVDVSGLGFEMQL-TRKASSLCSVGKEVSLHCHVQFSDAGPTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF L++ F+ L SV+G+G ++A+ VL +TA +V+++ + + +PGI K Sbjct: 60 FGFADGLEKAVFLRLLSVRGIGGKLALQVLQGMTAEAVVQAVSFGDPSGLTGVPGIGKKT 119 Query: 121 ASRIMTEL---------KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 A RI EL KG +L +V D V + AL +LG Sbjct: 120 AERICFELQEKMSEGLPKGSTDNLREMVVPDSETV-----------------MEALESLG 162 Query: 172 YGQDQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206 + Q Q+++ ++ + K++ D +I LALR ++ Sbjct: 163 F-QRQSSSEALAAIAKKRGSVDGLGVEDLIMLALRELN 199 >gi|222153876|ref|YP_002563053.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J] gi|254767391|sp|B9DW68|RUVA_STRU0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222114689|emb|CAR43773.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J] Length = 197 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 18/177 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGQLTKITAKYIVVEANGLGYIIYVA-NPYSFSDSVNQTLTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVAAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172 A +++ +L GK +++ E MP N AI AL+ LGY Sbjct: 120 AQQMILDLSGKFVTIP------------EGGQAQQMPKAKGNQQLDEAIEALLALGY 164 >gi|322377268|ref|ZP_08051760.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334] gi|321281981|gb|EFX58989.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334] Length = 197 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITRITAKYIVLEVNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNINYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAVQTSAENQELEE----------AMEAMLALGY 165 >gi|283957218|ref|ZP_06374680.1| putative Holliday junction ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] gi|283791290|gb|EFC30097.1| putative Holliday junction ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] Length = 183 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 28/185 (15%) Query: 23 GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 G+ Y I+ +L C KI + F+ +++D + +GFL +++ F +L V G Sbjct: 24 GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 VGA AM V S + +++ L + V+ ++PGI K A RI+ EL L + V Sbjct: 81 VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 D S A++AL+ LG+ Q++ ++SVL + S++I+ Sbjct: 140 DDKS-----------------EALTALLTLGFKQEK----IISVLASAQATG-TSELIKE 177 Query: 201 ALRAI 205 AL+ + Sbjct: 178 ALKKL 182 >gi|228935741|ref|ZP_04098554.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823979|gb|EEM69798.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 197 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R F Sbjct: 7 EYVVIDHNGIGYQIFTP--NPYVFQRSKQEIRVYTYHYVREDIMALYGFKTREERLLFTK 64 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ ++V++I ++ K + + P + K A +++ +LKGK Sbjct: 65 LLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPSVGKKTARQMILDLKGK--- 121 Query: 135 LSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ VV D ++++ + A+ AL LGY + + + V +LK+ Sbjct: 122 LADVVPDAFVDLFSDEERFDEKKGSSAELD----EALEALRALGYAEREVSRVVPELLKE 177 >gi|218441378|ref|YP_002379707.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424] gi|226725437|sp|B7K970|RUVA_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218174106|gb|ACK72839.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424] Length = 209 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Query: 1 MIGKIKGNIEGLYE-----DYVLIDVQGVCYIIYCPIRTLSCLGKIGD-FCTLFVETHMR 54 MI +KG + + + ++++V + Y I P R L D +F +R Sbjct: 1 MINYLKGKTTQILKTPSNRNILILEVNHIGYEIQIPSRLARNLSLEEDQIVQIFTHLQIR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF +D +R F L ++ GVG + A+ ++ + L+ +I+ + K +++ P Sbjct: 61 EDQQILYGFSTDSERDLFRQLININGVGTQTAIALIDTLGIEALINAIVTNDVKTLSKTP 120 Query: 115 GISMKIASRIMTELKGK 131 G+ K A RI ELK K Sbjct: 121 GVGPKTAERIALELKSK 137 >gi|57237644|ref|YP_178892.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221] gi|86153371|ref|ZP_01071575.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613230|ref|YP_001000488.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81-176] gi|157415070|ref|YP_001482326.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81116] gi|205356769|ref|ZP_03223528.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|73621848|sp|Q5HUZ3|RUVA_CAMJR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230537|sp|A1VZE7|RUVA_CAMJJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|172047113|sp|A8FLL2|RUVA_CAMJ8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57166448|gb|AAW35227.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221] gi|85843097|gb|EAQ60308.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249483|gb|EAQ72443.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81-176] gi|157386034|gb|ABV52349.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81116] gi|205345336|gb|EDZ31980.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|307747711|gb|ADN90981.1| Holliday junction ATP-dependent DNA helicase ruvA [Campylobacter jejuni subsp. jejuni M1] gi|315058253|gb|ADT72582.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni S3] gi|315931217|gb|EFV10189.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 327] Length = 183 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 28/185 (15%) Query: 23 GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 G+ Y I+ +L C KI + F+ +++D + +GFL +++ F +L V G Sbjct: 24 GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 VGA AM V S + +++ L + V+ ++PGI K A RI+ EL L + V Sbjct: 81 VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 D S A++AL+ LG+ Q++ ++SVL + S++I+ Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASAQATG-TSELIKE 177 Query: 201 ALRAI 205 AL+ + Sbjct: 178 ALKKL 182 >gi|315612298|ref|ZP_07887212.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis ATCC 49296] gi|315315691|gb|EFU63729.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis ATCC 49296] Length = 197 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEVNGIGYILHVA-NPYAYSGQVNQETQIYVHQVVREDTHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEE----------AMEAMLALGY 165 >gi|218296106|ref|ZP_03496875.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23] gi|218243483|gb|EED10012.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23] Length = 191 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + E L+ V GV + + P L L + G+ + +R++ + L Sbjct: 1 MIRYLKGVVARKEEGSFLLLVGGVGFQVQAPSPFLQGL-REGEEVGVHTHLALREEGLFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV GVG +VA+ +LS + L +++ + +++ G+ ++ Sbjct: 60 FGFPEEESLKLFELLLSVSGVGPKVALALLSALPPRLLAQALAEGDLRLLTSASGVGRRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELKGK V +D+ K ++ AI AL LG+ + QA + Sbjct: 120 AERLALELKGK-------VPKDLLTGEKVESREAEE------AILALAALGFKEGQARSV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L K A ++I+ ALR + Sbjct: 167 VLDLLAKNPG-AKAQELIKEALRRL 190 >gi|323165015|gb|EFZ50805.1| holliday junction DNA helicase RuvA [Shigella sonnei 53G] Length = 123 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 64/122 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKP 120 Query: 121 AS 122 S Sbjct: 121 PS 122 >gi|325295513|ref|YP_004282027.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065961|gb|ADY73968.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 188 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 2/134 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIR 59 MI +KG + Y D + + + + ++ P+ L+ + + GD LFV+ T + Sbjct: 1 MIDYLKGKVIFKYSDSISLLCGSIAFRVFVPLNLLTEI-REGDKVALFVKFTLPSEGTPS 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R +F L + VG++VAM V+S + EL + ++ K ++ +PG+ K Sbjct: 60 LYGFKTREERVFFEELLKIPKVGSKVAMSVISHFSLDELRNIVSTKDVKTLSTVPGLGKK 119 Query: 120 IASRIMTELKGKAI 133 ++ R++ ELK K I Sbjct: 120 LSERVILELKDKPI 133 >gi|332523205|ref|ZP_08399457.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str. Jelinkova 176] gi|332314469|gb|EGJ27454.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str. Jelinkova 176] Length = 197 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG ++ + Y++++ G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGKLKKITAKYIVVEANGLGYIIYVA-NPYSFTDSVNQNVTIYLHQVIREDAHIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVRAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + S QQ + AI AL+ LGY Sbjct: 120 AQQMILDLAGKFVDSSEPSQQQSQAKRNSNQQLDE-------AIEALLALGY 164 >gi|148926965|ref|ZP_01810642.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845049|gb|EDK22146.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] Length = 183 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 28/185 (15%) Query: 23 GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 G+ Y I+ +L C KI + F+ +++D + +GFL +++ F +L V G Sbjct: 24 GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 VGA AM V S + +++ L + V+ ++PGI K A RI+ EL L + V Sbjct: 81 VGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLEN-VS 139 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 D S A++AL+ LG+ Q++ ++SVL + S++I+ Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASAQATG-TSELIKE 177 Query: 201 ALRAI 205 AL+ + Sbjct: 178 ALKKL 182 >gi|24215603|ref|NP_713084.1| Holliday junction DNA helicase RuvA [Leptospira interrogans serovar Lai str. 56601] gi|24196756|gb|AAN50102.1| holliday junction DNA helicase RuvA [Leptospira interrogans serovar Lai str. 56601] Length = 212 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 39/228 (17%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVETHMR 54 MI +KG ++ L +V I+ G+ Y + Y ++ L L ++ +F + R Sbjct: 1 MISGLKGTLKKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQ--LQIFHSINER 58 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +LFGFL++ D+++F +++ +QG+G A+ +LS +A +L + +K + +IP Sbjct: 59 GQ--KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEAKELEKIP 116 Query: 115 GISMKIASRIMTELKGK---------------AISLSSVVQ--QDMSCVNKEQAHICSMP 157 + K + +I E+K ++ L+S++Q ++M+ K + I Sbjct: 117 KVKGKTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVIL--- 173 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LV LG+ + A+ V VLK + D +IIR L+++ Sbjct: 174 --------GLVQLGFEEKTASKEVDKVLKIFSS-NDPGEIIREILKSL 212 >gi|332712357|ref|ZP_08432284.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L] gi|332348831|gb|EGJ28444.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L] Length = 211 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM-- 53 MI +KG + + + +++DV + Y I R L T+ + TH+ Sbjct: 1 MISYLKGTVASIQKSTGNRVTLILDVNYIGYEIQITRRLSQELPVALSEKTVQIFTHLQI 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R++Q L+GF S +R F L SV G+GA++A+ +L + LV++I+ N + +++ Sbjct: 61 REEQQVLYGFASAAERDLFRQLVSVNGIGAQLAIALLDTLGLPNLVQAIVTGNIRALSKT 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ K A RI ELK K V S V + P + L+ LGY Sbjct: 121 PGVGSKTAERIALELKTKLAQWHKV-----SEVESPLSANGLSPGIQEDVEMTLLALGYE 175 Query: 174 QDQATTAVVSV-----LKKEKNIAD 193 D+ A+ ++ + K KN D Sbjct: 176 NDEIAQALHAISEDTQVAKSKNAED 200 >gi|57242124|ref|ZP_00370064.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis RM3195] gi|57017316|gb|EAL54097.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis RM3195] Length = 183 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQ 57 M+ I+G I + ++ Q GV Y IY +L C K+ C L + +++D Sbjct: 1 MVVAIEGIITKKEPTFAVLKTQNGVSYGIYI---SLFCAAKLELHTKCELLITQIIKEDS 57 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 +L+GFL +++ F +L V G+GA AM + S + + +++ L + V ++PGI Sbjct: 58 HKLYGFLEKDEQKIFEMLLKVNGIGATTAMTICSSLDSNAFYKALSLNDESVFKKVPGIG 117 Query: 118 MKIASRIMTELKGKAISLSSV 138 K A RI+ EL + ++V Sbjct: 118 AKSAKRIIVELADAKTAFNNV 138 >gi|313886562|ref|ZP_07820276.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica PR426713P-I] gi|312923972|gb|EFR34767.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica PR426713P-I] Length = 202 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 19/210 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT--LFVETHMRQDQI 58 MI ++G I+ L +D GV Y + + T L + L++ MRQ ++ Sbjct: 1 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLEREAPVRLWITEVMRQGEV 60 Query: 59 -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++ F L +V GVG A +LS + EL E I + K + + GI Sbjct: 61 CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQD 175 +K A RI+ +LKGK + + ++ + A I S + A AISAL LG+ Sbjct: 121 LKTAQRIIVDLKGK-------LPETLTDRDDVTAGIGSRAAREVAEEAISALKMLGF--- 170 Query: 176 QATTAVVSVLKKEKNIADDS---QIIRLAL 202 A V V+K+ ++ D+ Q+I+ AL Sbjct: 171 -AEVNVRKVVKQIMSVKPDTPVEQVIKQAL 199 >gi|293364377|ref|ZP_06611103.1| crossover junction endoribonuclease subunit A [Streptococcus oralis ATCC 35037] gi|307702657|ref|ZP_07639609.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC 35037] gi|331267168|ref|YP_004326798.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5] gi|291317223|gb|EFE57650.1| crossover junction endoribonuclease subunit A [Streptococcus oralis ATCC 35037] gi|307623773|gb|EFO02758.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC 35037] gi|326683840|emb|CBZ01458.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5] Length = 197 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIILEANGIGYILHVA-NPYAYSGQVNQETQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L S V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVAVQTSAENQELEE----------AMEAMLALGY 165 >gi|332300396|ref|YP_004442317.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas asaccharolytica DSM 20707] gi|332177459|gb|AEE13149.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas asaccharolytica DSM 20707] Length = 202 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 19/210 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT--LFVETHMRQDQI 58 MI ++G I+ L +D GV Y + + T L + L++ MRQ ++ Sbjct: 1 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60 Query: 59 -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++ F L +V GVG A +LS + EL E I + K + + GI Sbjct: 61 CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQD 175 +K A RI+ +LKGK + + ++ + A I S + A AISAL LG+ Sbjct: 121 LKTAQRIIVDLKGK-------LPETLTDRDDVTAGIGSRAAREVAEEAISALKMLGF--- 170 Query: 176 QATTAVVSVLKKEKNIADDS---QIIRLAL 202 A V V+K+ ++ D+ Q+I+ AL Sbjct: 171 -AEVNVRKVVKQIMSVKPDTPVEQVIKQAL 199 >gi|314923584|gb|EFS87415.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL001PA1] gi|314966629|gb|EFT10728.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL082PA2] gi|314981358|gb|EFT25452.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL110PA3] gi|315092024|gb|EFT64000.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL110PA4] gi|315092849|gb|EFT64825.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL060PA1] gi|315103631|gb|EFT75607.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL050PA2] gi|315105680|gb|EFT77656.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL030PA1] gi|327327453|gb|EGE69229.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL103PA1] Length = 158 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%) Query: 53 MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 +R++ + L+GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + + Sbjct: 9 VREESLTLYGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCR 68 Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 +PGI K A++++ ELK K +L+ H+ + + LV LG+ Sbjct: 69 VPGIGRKGAAKMILELKDKVAALAP-----RGASASGATHVAA--PWREQVAEGLVGLGW 121 Query: 173 GQDQATTAV--VSVLKKEKNIADDSQIIRLALRAIS 206 A AV V LK+ ++R ALR+++ Sbjct: 122 STKDAEKAVDKVVALKEADPAMSIGNLMRAALRSLA 157 >gi|315604284|ref|ZP_07879350.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313990|gb|EFU62041.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 180 str. F0310] Length = 201 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 10/183 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G + D+V + V G+ + ++ T +C + + V T M R+D + Sbjct: 1 MISILRGTVASTGLDHVDVVVGGIGFRVHV---TPACAQAMARDREITVHTSMIVREDSM 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S +R F L +V G+G ++A+ L+ + +L ++ Q+ V+ +IPG+ Sbjct: 58 TLYGFESSDERDVFAALMTVSGIGPKIALAALAVLRPDDLRRAVRDQDLAVLQRIPGVGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R+ E+ K S ++ + ++ + + A ALV LG+ + QA Sbjct: 118 KSAQRMALEIGDKLGSPAA-----LPGAGPTRSAPPAEDAVAAEVRVALVGLGWSETQAC 172 Query: 179 TAV 181 A+ Sbjct: 173 AAI 175 >gi|213163229|ref|ZP_03348939.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 174 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 25/185 (13%) Query: 31 PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 P+ L + G +F +R+D L+GF + +R F L GVG ++A+ +L Sbjct: 2 PMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAIL 61 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK-----------AISLSSVV 139 S ++A + V ++ + + ++PGI K A R++ E+K + A+ L Sbjct: 62 SGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTS 121 Query: 140 QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIR 199 + + EQ A++ALV LGY +A+ V + + + A +IR Sbjct: 122 PASPTSEDAEQ-----------EAVAALVALGYKPQEASRMVSKIARPD---ASSETLIR 167 Query: 200 LALRA 204 ALRA Sbjct: 168 DALRA 172 >gi|330718512|ref|ZP_08313112.1| Holliday junction DNA helicase RuvA [Leuconostoc fallax KCTC 3537] Length = 196 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 12/159 (7%) Query: 16 YVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R +I ++E +R+ +I L+GF +++ F Sbjct: 16 YLVVENNGIGYRLNIANPYRFTEKTSRI-----FYIEQIVRETEISLYGFADASEKKLFN 70 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L V G+G + A+ +L+ +A L ++ + + Q PG+ K A +I+ +LKGK Sbjct: 71 KLLDVSGIGPKSALAILASDSAIGLASAVENDDVSYLTQFPGVGKKTAQQIILDLKGKLD 130 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + +Q H +A+ AL+ LGY Sbjct: 131 DLVSAADAPEQSIVSKQDHRA-----LDDALDALIALGY 164 >gi|77408136|ref|ZP_00784882.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1] gi|77173236|gb|EAO76359.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1] Length = 196 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ G+ Y+IY S G + T+++ +R D L Sbjct: 1 MYDYIKGKLSKITAKFIVVETAGLGYVIYVA-NPYSFSGYVNQEVTIYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + S +++ +++ A+ AL+ LGY Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNLEE-------AMEALLALGY 164 >gi|76787979|ref|YP_330625.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909] gi|77405120|ref|ZP_00782219.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B] gi|77410868|ref|ZP_00787225.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae CJB111] gi|90135931|sp|Q3JYM8|RUVA_STRA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76563036|gb|ABA45620.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909] gi|77163086|gb|EAO74040.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae CJB111] gi|77176263|gb|EAO79033.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B] gi|319745991|gb|EFV98273.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus agalactiae ATCC 13813] Length = 196 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ G+ Y+IY S G + T+++ +R D L Sbjct: 1 MYDYIKGKLSKITAKFIVVETAGLGYVIYVA-NPYSFSGYVNQEVTIYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + S +++ +++ A+ AL+ LGY Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNLEE-------AMEALLALGY 164 >gi|228471297|ref|ZP_04056103.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3] gi|228306939|gb|EEK16037.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3] Length = 202 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 19/210 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT--LFVETHMRQDQI 58 MI ++G I+ L +D GV Y + + T L + L++ MRQ ++ Sbjct: 1 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60 Query: 59 -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++ F L +V GVG A +LS + EL E I + K + + GI Sbjct: 61 CDLYGFYTREEQALFAKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQD 175 +K A RI+ +LKGK + + ++ + A I S + A AISAL LG+ Sbjct: 121 LKTAQRIIVDLKGK-------LPETLTDRDDVTAGIGSRAAREVAEEAISALKMLGF--- 170 Query: 176 QATTAVVSVLKKEKNIADDS---QIIRLAL 202 A V V+K+ + D+ Q+I+ AL Sbjct: 171 -AEANVRKVVKQIMTVKPDTPVEQVIKQAL 199 >gi|323464267|gb|ADX76420.1| Holliday junction DNA helicase RuvA [Staphylococcus pseudintermedius ED99] Length = 199 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 8/175 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G + L+ +++++ G+ Y I P + + ++ +R+D Sbjct: 1 MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQMVKVYTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F+ L V G+G + A+ +L+ + E+ +I +N + Q PGI K Sbjct: 60 LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++ V + + + EQ + A+ AL LGY + Sbjct: 120 TARQIVLDLKGKVV-VTEEVSEGLLDIATEQEDLAVQ-----EALLALEALGYSK 168 >gi|306828753|ref|ZP_07461945.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus mitis ATCC 6249] gi|304428931|gb|EFM32019.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus mitis ATCC 6249] Length = 197 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQETQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L S V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVAVQTSAENQELEE----------AMEAMLALGY 165 >gi|291545898|emb|CBL19006.1| Holliday junction resolvasome, DNA-binding subunit [Ruminococcus sp. SR1/5] Length = 134 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 5/134 (3%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 F LL V GVG + A+G+LS I+A EL +++ + K I++ PGI K A +++ ELK K Sbjct: 2 FKLLIGVNGVGPKGALGILSGISADELRFAVLSDDVKTISKAPGIGKKTAQKMILELKDK 61 Query: 132 AISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190 + L + ++ +E A S + A+ ALV LGY A AV V E Sbjct: 62 -LKLEDAFEMKLAHQQEEAAEGASDLRDSRQEAVEALVALGYSSADALRAVRKV--PEDV 118 Query: 191 IADDSQ-IIRLALR 203 ADD + I+R AL+ Sbjct: 119 PADDVEAILRAALK 132 >gi|317124983|ref|YP_004099095.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum DSM 43043] gi|315589071|gb|ADU48368.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum DSM 43043] Length = 201 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 38 LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97 +G+ D T V +R+D + L+GF ++ ++ F +Q+V GVG R+A+ VL+ T Sbjct: 40 IGQPADLATTLV---VREDSLTLYGFATEEEKHVFETVQTVSGVGPRLALAVLAVHDPTS 96 Query: 98 LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP 157 + ++ + + ++PGI K A R++ EL+ K +L+ D + + ++ + P Sbjct: 97 VRRALGSGDIAALTKVPGIGKKGAERLVLELRDKLGALAG--SSDGASIGHQR--MDGEP 152 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + ALV LG+ QA A+ V + + A S ++R ALR + Sbjct: 153 -WREQVREALVGLGWTVRQADDALDRVAPQAADGASVSAMLRAALREL 199 >gi|299535650|ref|ZP_07048971.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus fusiformis ZC1] gi|298728850|gb|EFI69404.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus fusiformis ZC1] Length = 206 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 26/188 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56 M +KG I + ++++++ QG+ + + P RT + +I +V H+R+D Sbjct: 1 MYDYLKGQITRITPEFIVLEQQGIGWQLNTPNPFAFRTSALEQQI------YVHLHVRED 54 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + R+ F L V G+G + A+ +L+ +++ +I ++ + + PG+ Sbjct: 55 AQVLYGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGV 114 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS--------ALV 168 K A +++ +LKGK SL ++ + E +P F +NA AL+ Sbjct: 115 GKKTARQMILDLKGKLGSLLDTLE--LPSAEDE------LPLFGVNAYKHELEEALLALM 166 Query: 169 NLGYGQDQ 176 LGY + + Sbjct: 167 ALGYSEKE 174 >gi|15900116|ref|NP_344720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae TIGR4] gi|111657940|ref|ZP_01408649.1| hypothetical protein SpneT_02000889 [Streptococcus pneumoniae TIGR4] gi|148987917|ref|ZP_01819380.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP6-BS73] gi|148992760|ref|ZP_01822403.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP9-BS68] gi|149001716|ref|ZP_01826689.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] gi|149005932|ref|ZP_01829661.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP18-BS74] gi|168486048|ref|ZP_02710556.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1087-00] gi|168490355|ref|ZP_02714554.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP195] gi|168493877|ref|ZP_02718020.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC3059-06] gi|169832637|ref|YP_001693700.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae Hungary19A-6] gi|237649747|ref|ZP_04523999.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI 1974] gi|237821445|ref|ZP_04597290.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI 1974M2] gi|307126405|ref|YP_003878436.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae 670-6B] gi|20455255|sp|Q97SY4|RUVA_STRPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560133|sp|B1I8F7|RUVA_STRPI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|14971646|gb|AAK74360.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae TIGR4] gi|147760174|gb|EDK67163.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] gi|147762288|gb|EDK69249.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP18-BS74] gi|147926381|gb|EDK77454.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP6-BS73] gi|147928486|gb|EDK79501.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP9-BS68] gi|168995139|gb|ACA35751.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae Hungary19A-6] gi|183570844|gb|EDT91372.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1087-00] gi|183571324|gb|EDT91852.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP195] gi|183576015|gb|EDT96543.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC3059-06] gi|306483467|gb|ADM90336.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae 670-6B] gi|332075851|gb|EGI86318.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA17570] gi|332076630|gb|EGI87092.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA17545] gi|332077485|gb|EGI87946.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA41301] gi|332204192|gb|EGJ18257.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA47901] Length = 197 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165 >gi|15902209|ref|NP_357759.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae R6] gi|116515482|ref|YP_815689.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae D39] gi|148996605|ref|ZP_01824323.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP11-BS70] gi|149011051|ref|ZP_01832356.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP19-BS75] gi|168576389|ref|ZP_02722272.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae MLV-016] gi|182683163|ref|YP_001834910.1| holliday junction DNA helicase motor protein [Streptococcus pneumoniae CGSP14] gi|221231090|ref|YP_002510242.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC 700669] gi|303255118|ref|ZP_07341194.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS455] gi|307066862|ref|YP_003875828.1| Holliday junction resolvasome DNA-binding subunit [Streptococcus pneumoniae AP200] gi|32171637|sp|Q8DRE8|RUVA_STRR6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122279425|sp|Q04MQ9|RUVA_STRP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560134|sp|B2IS15|RUVA_STRPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767390|sp|B8ZKD4|RUVA_STRPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15457707|gb|AAK98969.1| Holliday junction DNA helicase [Streptococcus pneumoniae R6] gi|116076058|gb|ABJ53778.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae D39] gi|147757180|gb|EDK64219.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP11-BS70] gi|147764687|gb|EDK71617.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP19-BS75] gi|182628497|gb|ACB89445.1| holliday junction DNA helicase motor protein [Streptococcus pneumoniae CGSP14] gi|183577836|gb|EDT98364.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae MLV-016] gi|220673550|emb|CAR68036.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC 700669] gi|301793458|emb|CBW35831.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae INV104] gi|301801130|emb|CBW33803.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae INV200] gi|302597948|gb|EFL65018.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS455] gi|306408399|gb|ADM83826.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus pneumoniae AP200] Length = 197 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDGLPAKVAVQASAENQELEE----------AMEAMLALGY 165 >gi|167755866|ref|ZP_02427993.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402] gi|237734834|ref|ZP_04565315.1| holliday junction DNA helicase subunit RuvA [Mollicutes bacterium D7] gi|167704805|gb|EDS19384.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402] gi|229382162|gb|EEO32253.1| holliday junction DNA helicase subunit RuvA [Coprobacillus sp. D7] Length = 188 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 D+++++ G+ Y+IY GK +F+ +++D + L+GF + +++ F+ Sbjct: 15 DHIVVENSGIGYLIYVNNPYEYTRGK---EIKIFLYQQVKEDALLLYGFKTSEEKEMFLK 71 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L V+G+G + A+G+L+ T ++ +I N + +IPGI K A +I+ +L+GK Sbjct: 72 LILVKGIGCKTAIGILATGDVTSIISAIETGNVAYLKKIPGIGPKAAQQIILDLQGK 128 >gi|219685405|ref|ZP_03540224.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04] gi|219673178|gb|EED30198.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04] Length = 196 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 2/99 (2%) Query: 37 CLG--KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 CL K+ D LF + +++++LFGFL+ +R+ F L V G+G R A+ VLS I Sbjct: 34 CLANFKLSDKVELFTYLYAGENELKLFGFLNSDERETFKSLIGVSGIGPRAALRVLSNIR 93 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 E ++I ++ +++++I GI K+A ++ L+GK + Sbjct: 94 YNEFKDAIDREDVELVSKIKGIGKKMAGKMFLHLQGKLL 132 >gi|309799338|ref|ZP_07693581.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302] gi|308117005|gb|EFO54438.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302] Length = 197 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGRVNQEAQIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172 A +++ +L+GK + V D+ + PS + N A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVV----VAGDDLPTK-------TAAPSSSDNQELEEAMEAMLALGY 165 >gi|322375071|ref|ZP_08049585.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300] gi|321280571|gb|EFX57610.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300] Length = 197 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 88/176 (50%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + +L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVASDALPAKVAVQASAENQELEE----------AMEAMLALGY 165 >gi|319892695|ref|YP_004149570.1| Holliday junction DNA helicase RuvA [Staphylococcus pseudintermedius HKU10-03] gi|317162391|gb|ADV05934.1| Holliday junction DNA helicase RuvA [Staphylococcus pseudintermedius HKU10-03] Length = 199 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 8/175 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G + L+ +++++ G+ Y I P + + ++ +R+D Sbjct: 1 MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQTVKVYTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F+ L V G+G + A+ +L+ + E+ +I +N + Q PGI K Sbjct: 60 LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +I+ +LKGK + ++ V + + + EQ + A+ AL LGY + Sbjct: 120 TARQIVLDLKGKVV-VTEEVSEGLLDIATEQEDLAVQ-----EALLALEALGYSK 168 >gi|172036123|ref|YP_001802624.1| Holliday junction DNA helicase RuvA [Cyanothece sp. ATCC 51142] gi|226698729|sp|B1WUV7|RUVA_CYAA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171697577|gb|ACB50558.1| Holliday junction DNA helicase [Cyanothece sp. ATCC 51142] Length = 212 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%) Query: 43 DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102 D +F +++DQ L+GF + +R+ F L SV G+GA+ A+ ++ + ELV++I Sbjct: 49 DTIQIFTHVQIKEDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAI 108 Query: 103 ILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI- 161 + N ++++Q GI K A RI EL+ K + Q V +MPS I Sbjct: 109 VTGNIRILSQPSGIGRKTAERIALELRTK-------LSQWRKMVGVTVTSSAAMPSLEIL 161 Query: 162 -NAISALVNLGYGQDQATTAVVSV 184 + L+ LGY ++ A+ ++ Sbjct: 162 EDIEMTLLALGYTNEEINKAISTL 185 >gi|22538230|ref|NP_689081.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 2603V/R] gi|25012088|ref|NP_736483.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae NEM316] gi|76799561|ref|ZP_00781690.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 18RS21] gi|77414038|ref|ZP_00790209.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515] gi|44888490|sp|Q8DWW6|RUVA_STRA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|44888493|sp|Q8E2R7|RUVA_STRA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|22535142|gb|AAN00954.1|AE014286_17 Holliday junction DNA helicase RuvA [Streptococcus agalactiae 2603V/R] gi|24413632|emb|CAD47709.1| Unknown [Streptococcus agalactiae NEM316] gi|76585090|gb|EAO61719.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 18RS21] gi|77159920|gb|EAO71060.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515] Length = 196 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ G+ Y+IY S G + T+++ +R D L Sbjct: 1 MYDYIKGKLSKITAKFIVVETAGLGYMIYVA-NPYSFSGYVNQEVTIYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + S +++ +++ A+ AL+ LGY Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNLEE-------AMEALLALGY 164 >gi|331668556|ref|ZP_08369404.1| holliday junction DNA helicase RuvA [Escherichia coli TA271] gi|331063750|gb|EGI35661.1| holliday junction DNA helicase RuvA [Escherichia coli TA271] gi|332756762|gb|EGJ87109.1| holliday junction DNA helicase RuvA [Shigella flexneri 4343-70] Length = 123 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119 >gi|227875448|ref|ZP_03993589.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris ATCC 35243] gi|269977300|ref|ZP_06184273.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1] gi|306818760|ref|ZP_07452482.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus mulieris ATCC 35239] gi|307701010|ref|ZP_07638035.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16] gi|227844002|gb|EEJ54170.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris ATCC 35243] gi|269934603|gb|EEZ91164.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1] gi|304648446|gb|EFM45749.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus mulieris ATCC 35239] gi|307614005|gb|EFN93249.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16] Length = 193 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 18/204 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D I G+ + TLS L + G ++ +R+D + L Sbjct: 1 MIALLKGQVVDKRIDRATILCGGLGLEFFATPNTLSTLNQ-GQDAEIYTCLVVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R+ F +L V+G+G ++A+ L+ ++ ++L ++ ++ + +IPG+ K Sbjct: 60 YGFDDFQQRETFQILIQVKGIGPKLALATLAVLSPSDLANAVANRDLTTLQRIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AINAISALVNLGYGQDQATT 179 A R+ E+ K + V + F A + AL NLG+ Q QAT Sbjct: 120 AERMSLEIGDK-----------LGIVPTSVTTAATGGGFNATTVVEALTNLGWNQAQATE 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 AV ++ E N D + +R AL+ Sbjct: 169 AVNAI---EAN--DAATALREALQ 187 >gi|320449357|ref|YP_004201453.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01] gi|320149526|gb|ADW20904.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01] Length = 191 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + E L+ V GV +++ P L L K G + +R++ + L Sbjct: 1 MIRYLRGTVLKREEGGFLLLVNGVGFLVQAPQTFLQSL-KEGQEVAVHTHLQLREEGLFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LL SV GVG +VA+ +LS +T L +++ + +++ G+ ++ Sbjct: 60 YGFPDEESLLLFELLLSVSGVGPKVALSLLSALTPRLLAQALAQGDLRLLTAASGVGRRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELKGK + S + Q + E+ AI AL LG+ + QA Sbjct: 120 AERIALELKGK-VPPSLLTGQKVESQAAEE------------AILALTALGFKEGQARGV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L K + A ++I+ AL+ + Sbjct: 167 VLDLLAKRPS-ASAQELIKEALKRL 190 >gi|330444140|ref|YP_004377126.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58] gi|328807250|gb|AEB41423.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58] Length = 207 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 9/189 (4%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQIRLFGFLSDLDRQWFML 74 V ++ QGV Y I+ R C + + TH +++ + L+GF S +R F + Sbjct: 17 VTLECQGVGYSIFVTER-WGCDLIAASQKEVLIYTHAVLKETEHTLYGFCSREERDCFRM 75 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L S G+G + A +L+ + +L ++ ++ K ++ IPGI K A ++M +LK K S Sbjct: 76 LISFSGIGPKFANAILNSLPIKQLCCAVHNEDVKALSSIPGIGKKTAEKLMLDLKQKLPS 135 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 + + + S + S + + ALV LGY + A + LK+ A Sbjct: 136 VLPLGGGETSPWQPLEL------SHREDGVQALVGLGYSKVMAEHMIAEALKELPKGASL 189 Query: 195 SQIIRLALR 203 ++++ +AL+ Sbjct: 190 TEVLPIALK 198 >gi|290890055|ref|ZP_06553138.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429] gi|290480246|gb|EFD88887.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429] Length = 178 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 IDV G+ + ++ P D T+F E +R +QI L+GF + +R F L +V Sbjct: 3 IDVNGIGFRVFTPNPYEYNQN---DQTTIFTEQIVRDNQISLYGFKTVKERNLFQKLLNV 59 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 G+G + A+ +++ L+ ++ K + + PGI K A +I+ +LKGK S Sbjct: 60 SGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDFSKN 119 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 + M + + A + +A++ALV LG+ Sbjct: 120 IAP-MKNLLENSAELD-------DALAALVALGF 145 >gi|16330186|ref|NP_440914.1| Holliday junction DNA helicase RuvA [Synechocystis sp. PCC 6803] gi|3122847|sp|P73554|RUVA_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|1652674|dbj|BAA17594.1| Holliday junction DNA helicase; RuvA [Synechocystis sp. PCC 6803] Length = 211 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 16/205 (7%) Query: 8 NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQIRLFGFLS 65 NI+ + ++++ V GV Y + P +L+ V TH+ RQDQI LFGF Sbjct: 15 NIQNRW--FLILSVNGVGYELQVP-HSLAQQWTPPPPEPQQVFTHLLVRQDQIALFGFGR 71 Query: 66 DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +R F L V G+GA++A+ ++ + LV++++ N K + Q PG+ K A R+ Sbjct: 72 LAERDLFGQLMGVTGIGAQLAIALIETLGLEGLVQAVVTGNVKQLCQTPGVGKKGAERLA 131 Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI--NAISALVNLGYGQD--QATTAV 181 ELK K LS + M + ++P+ A+ + L+ LGY Q Q A+ Sbjct: 132 LELKTK---LSQWHKLQMGTGETD----STLPTTALLEDLEMTLLALGYTQTEIQQAIAM 184 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 VS + D IR A+ +S Sbjct: 185 VSQVPDVAQSEDPEVWIRQAIGWLS 209 >gi|319956495|ref|YP_004167758.1| holliday junction DNA helicase subunit ruva [Nitratifractor salsuginis DSM 16511] gi|319418899|gb|ADV46009.1| Holliday junction DNA helicase subunit RuvA [Nitratifractor salsuginis DSM 16511] Length = 187 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G +E ++ ++V G+ Y + + T + + GK + L+V +R+D Sbjct: 1 MIVGIEGKVEAREPTWLHLNVGGLIYEVNVSLNTSNTVAGK--EQVKLYVTQIIREDANL 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF +++ F L + GVG +VA V S T + + ++ ++ ++PGI K Sbjct: 59 LFGFADRNEKKMFDTLLKINGVGPKVAQAVCSTFTPESFAKIVAAKDVALLKRVPGIGPK 118 Query: 120 IASRIMTEL 128 ASRI+ EL Sbjct: 119 AASRILVEL 127 >gi|332202100|gb|EGJ16169.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA41317] Length = 197 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + + S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEE----------AMEAMLALGY 165 >gi|153952036|ref|YP_001398280.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. doylei 269.97] gi|166230536|sp|A7H450|RUVA_CAMJD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152939482|gb|ABS44223.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. doylei 269.97] Length = 183 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 28/185 (15%) Query: 23 GVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 G+ Y I+ +L C KI + F+ +++D + +GFL +++ F +L V G Sbjct: 24 GLSYGIFI---SLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNG 80 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 VGA AM V S + +++ L + V+ ++PGI K A RI+ EL L + V Sbjct: 81 VGANTAMAVCSSLDINSFYKALSLGDESVLKKVPGIGPKSAKRIIVELSDTRTKLEN-VS 139 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 D S A++AL+ LG+ Q++ ++SVL + S++I+ Sbjct: 140 DDKS-----------------EALAALLTLGFKQEK----IISVLASAQATG-TSELIKE 177 Query: 201 ALRAI 205 AL+ + Sbjct: 178 ALKKL 182 >gi|222151527|ref|YP_002560683.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus JCSC5402] gi|254766967|sp|B9E719|RUVA_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222120652|dbj|BAH17987.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus JCSC5402] Length = 193 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 12/194 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + +++I+V G+ Y P ++ TL + +R+D L Sbjct: 1 MYAYLKGKIMTILPTHLVIEVSGIGYECLTP-NPYRFNHQLDQMITLHTQLVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L V G+G + A+ +L+ T E++++I ++ + + PGI K Sbjct: 60 YGFKDEEEKAMFNALNKVTGIGPKSALAILATSTPQEIIKAIESESESYLIKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + D S + KE + A+ A LGY + + T Sbjct: 120 ARQIILDLKGK------LTITDESELFKEVND-----TLLNEALLAFEALGYSKREITKI 168 Query: 181 VVSVLKKEKNIADD 194 + KK+ + D+ Sbjct: 169 EKELKKKQFSTVDE 182 >gi|307708034|ref|ZP_07644503.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC 12261] gi|307615924|gb|EFN95128.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC 12261] Length = 197 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEVNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDFPAKVAVQASAENQELEE----------AMEAMLALGY 165 >gi|123966258|ref|YP_001011339.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9515] gi|123200624|gb|ABM72232.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9515] Length = 228 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 76/141 (53%), Gaps = 7/141 (4%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMR 54 MI +KG + ++ Y+LI+ QG+ Y I + L + D + H++ Sbjct: 1 MISWVKGKLVSSWQTNNKFYILINCQGLGYEIQTIESVFNELNSKNVSDKEIILWLKHIK 60 Query: 55 -QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 +D LFGF + R +F+ + +++G+G+++ + +L++ T +++ +I + K+I+ + Sbjct: 61 KEDSDSLFGFFTKDQRDFFIQILNIKGIGSQIGIALLNKFTLNQIINAISNNDKKLISSV 120 Query: 114 PGISMKIASRIMTELKGKAIS 134 GI K+ RI+ ELK K + Sbjct: 121 QGIGQKMTDRIILELKSKVFT 141 >gi|307705927|ref|ZP_07642764.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597] gi|307620523|gb|EFN99622.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597] Length = 197 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEVNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVAVKASAENQELEE----------AMEAMLALGY 165 >gi|322388581|ref|ZP_08062181.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus infantis ATCC 700779] gi|321140501|gb|EFX36006.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus infantis ATCC 700779] Length = 197 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172 A +++ +L+GK + V D+ + PS + N A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVV----VAGDDLPAK-------TAAPSSSDNQELEEAMEAMLALGY 165 >gi|111221574|ref|YP_712368.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a] gi|111149106|emb|CAJ60789.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a] Length = 252 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 1/129 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V GV ++ C TL+ L +IG+ +L +R+ ++ L Sbjct: 1 MIASLAGTVRALGPLSAVVEVGGVGLLVQCTPATLARL-RIGEPASLATTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +LQS GVG ++A VL + ++ ++ + ++PGI K Sbjct: 60 YGFPDADARDVFEILQSAAGVGPKLAQAVLGVHEPDAVRRAVAEEDLAALTKVPGIGRKG 119 Query: 121 ASRIMTELK 129 A RI+ +L+ Sbjct: 120 AQRIVLDLR 128 >gi|327475180|gb|AEA77185.1| holliday junction DNA helicase [Bacillus sp. 15.4] Length = 202 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 90/178 (50%), Gaps = 6/178 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G ++ + +YV+++ G+ Y I+ L + + T++ H+R+D + L Sbjct: 1 MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKYENQE-KTIYTYQHVREDILAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ F+ L +V G+G + A+ +L+ +++ +I ++ + + + PG+ K Sbjct: 60 YGFLSMEEKLLFIKLLNVSGIGPKGALAILASGAPEQVITAIEGEDERFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--QAHICSMPSFAINAISALVNLGYGQDQ 176 A +++ +LKGK L VV + E Q + + A AL LGY + + Sbjct: 120 ARQMILDLKGK---LQDVVPDYFPNLFNEGKQETVSNNDELIDEAALALKALGYSERE 174 >gi|269792533|ref|YP_003317437.1| RuvA domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100168|gb|ACZ19155.1| RuvA domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 194 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 13/164 (7%) Query: 42 GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101 G+ L V + I L+GF D +R+ F+LL GVG ++AMG+L+ + E++++ Sbjct: 41 GESIRLPVYLSVSDSGISLYGFGDDHERRVFLLLLQASGVGCKMAMGILNSMDKGEVLDA 100 Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 I + I++ G+ K A RI ELK K SL + S S Sbjct: 101 IASGDVARISRAQGVGPKRAERICFELKDKVTSL--------GIPRGNSGALVSTGSI-- 150 Query: 162 NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + AL+ LG+ + +A A+ V K +++ +D ++R ALR + Sbjct: 151 --LEALMGLGFSRGEAAMALGEVRSKGEDLPEDQLLLR-ALRVL 191 >gi|289168757|ref|YP_003447026.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6] gi|303259227|ref|ZP_07345205.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP-BS293] gi|303260983|ref|ZP_07346932.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP14-BS292] gi|303263310|ref|ZP_07349233.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS397] gi|303265475|ref|ZP_07351375.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS457] gi|303267967|ref|ZP_07353769.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS458] gi|288908324|emb|CBJ23166.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6] gi|302637820|gb|EFL68306.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP14-BS292] gi|302639645|gb|EFL70102.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP-BS293] gi|302642663|gb|EFL73008.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS458] gi|302644915|gb|EFL75162.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS457] gi|302647083|gb|EFL77307.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS397] Length = 197 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165 >gi|296122693|ref|YP_003630471.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM 3776] gi|296015033|gb|ADG68272.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM 3776] Length = 207 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 101/200 (50%), Gaps = 14/200 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP---IRTLSC-LGKIGDFCTL-FVETHMRQ 55 MI +I G + L ED V +++ Y + P R L LG++ CT+ +++ + +Q Sbjct: 1 MITRITGKLVRLSEDIVRLEIGAFEYEVLVPEFVRRQLQPKLGEVVSLCTIDYLDGNPQQ 60 Query: 56 DQI--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++ RL GFLS+ + ++F ++ SV G+G + + + R E+ E+I Q+ K + + Sbjct: 61 GRLVPRLAGFLSETELEFFEMICSVDGMGVKKTLRAMVR-PVREIAEAIEEQSIKELTLL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ +A RI+ +L+ K + +V +++ ++ + A AL+ LG+ Sbjct: 120 PGVGPAMAERIVAKLRRKMTKFALMVAREVPREADVDRNVLT------EAYEALMALGHS 173 Query: 174 QDQATTAVVSVLKKEKNIAD 193 +A + V ++K D Sbjct: 174 SIEARDKIDQVASQKKKFKD 193 >gi|309388950|gb|ADO76830.1| Holliday junction DNA helicase RuvA [Halanaerobium praevalens DSM 2228] Length = 198 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + V++ + G+ Y + + + ++G +F T++R+D ++L Sbjct: 1 MIGYLEGEVIEAEFNKVILGINGIGYEL--ELAGFTKQPRLGQKLEVFTYTYVREDVLKL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F +Q F +L +V G+G + +L+ + A + +I+ +N + +I GI K Sbjct: 59 FAFPEKSYKQLFEILITVNGIGPSAGLNILNTMPAARFISAILQKNEVTLKEISGIGPKT 118 Query: 121 ASRIMTELKGK 131 A R++ EL+ K Sbjct: 119 AQRLILELQSK 129 >gi|260558373|ref|ZP_05830569.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68] gi|260075547|gb|EEW63853.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68] Length = 200 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 12/190 (6%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ + Y I P R S K+ ++V +R+D L+GF S ++Q F+ Sbjct: 16 YIVVETNSIGYQIALGNPYRYSS---KLNQKIKIYVHQVIREDAHLLYGFDSLEEKQLFL 72 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L SV G+G + A+ +++ + L++++ + + + PG+ K A +++ +LKGK Sbjct: 73 RLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFG 132 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 LS + S ++ + S A+ A+SA LGY D+ V LK+ N Sbjct: 133 ELS--IDTPFSLFDEANTKDATALSEAMEALSA---LGYS-DREIKRVEKQLKEVDNQTT 186 Query: 194 DSQIIRLALR 203 D + +R AL+ Sbjct: 187 D-EYLRQALK 195 >gi|298529992|ref|ZP_07017394.1| Holliday junction DNA helicase RuvA [Desulfonatronospira thiodismutans ASO3-1] gi|298509366|gb|EFI33270.1| Holliday junction DNA helicase RuvA [Desulfonatronospira thiodismutans ASO3-1] Length = 203 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + L+ G+ Y ++ L + G+ L +R+D + Sbjct: 1 MIALIRGTLVSFNDKSCLVMTASGLGYEVHVSAMGLQNMPGQGEELELHTSMVVREDALD 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L + +G + A+ +L + +++ + I ++ + Q+PGI K Sbjct: 61 LYGFFTRDERETFNVLLNAPKLGPKTALAILGIFSPSQIQKIINTEDEAALTQVPGIGSK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ +LK + + S +D + + ++ L +LGY + T Sbjct: 121 TARRLILDLKDR-LGFISPQHEDPRPAPGPRG-------VRQDVLAGLTSLGYSAAEVTP 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + VL+KE ++ D S IR L+ Sbjct: 173 LLDEVLEKEPDL-DVSSAIRAVLK 195 >gi|158316901|ref|YP_001509409.1| DNA recombination protein RuvA [Frankia sp. EAN1pec] gi|158112306|gb|ABW14503.1| DNA recombination protein RuvA domain I [Frankia sp. EAN1pec] Length = 239 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 1/183 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E L ++DV GV +++C TL+ L ++G+ L +R+ ++ L Sbjct: 1 MIASVSGTVEVLSPGSAVVDVGGVGVLVWCTPSTLARL-RVGERARLATTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F +LQ GVG R+A VL + + ++ ++ + ++PGI K Sbjct: 60 YGFRDADERDVFEILQGAAGVGPRLAQAVLGVHSPDVIRRAVAEEDLATLTKVPGIGRKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ + SS V + A + + ALV LGY +A A Sbjct: 120 AQRIVLDLRDRLGPPSSPVPPQRAAAPPPAAADPRLGAAGEQVRDALVGLGYSAKEALDA 179 Query: 181 VVS 183 VV+ Sbjct: 180 VVA 182 >gi|46199998|ref|YP_005665.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27] gi|55980260|ref|YP_143557.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8] gi|20455264|sp|Q9F1Q3|RUVA_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81405352|sp|Q72GZ9|RUVA_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24987359|pdb|1IXR|A Chain A, Ruva-Ruvb Complex gi|24987360|pdb|1IXR|B Chain B, Ruva-Ruvb Complex gi|11559438|dbj|BAB18786.1| Holliday junction binding protein [Thermus thermophilus] gi|46197625|gb|AAS82038.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27] gi|55771673|dbj|BAD70114.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8] Length = 191 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 23 GVCYIIYCPIRTLSCL--GKIGDFCTLFVETHM--RQDQIRLFGFLSDLDRQWFMLLQSV 78 GV + + P L L GK + V TH+ +++ + L+GF + + F LL SV Sbjct: 23 GVGFFLQAPTPFLQALEEGK-----EVGVHTHLLLKEEGLSLYGFPDEENLALFELLLSV 77 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 GVG +VA+ +LS + L +++ +++++ G+ ++A RI ELKGK Sbjct: 78 SGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGK------- 130 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 V + K ++ A+ AL LG+ + QA V+ +L + A +I Sbjct: 131 VPPHLLAGEKVESEAAE------EAVMALAALGFKEAQARAVVLDLLAQNPK-ARAQDLI 183 Query: 199 RLALR 203 + AL+ Sbjct: 184 KEALK 188 >gi|172058107|ref|YP_001814567.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum 255-15] gi|229560031|sp|B1YJR2|RUVA_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171990628|gb|ACB61550.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum 255-15] Length = 197 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 2/137 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + ++V I+V G+ Y I P G + ++ ++R+DQ L Sbjct: 1 MIEFVRGEVAYVCAEFVTIEVGGIGYKIVAPNPFFYRTGD--EQVIVYTYHYVREDQEVL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+G + ++ +++ LVE+I + + + PG+ K Sbjct: 59 FGFRSRRERALFTKLLGVTGIGPKGSLAIVASGDVDALVEAIEQEKESYLIKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSS 137 A ++ +LKGK L+ Sbjct: 119 AKQMTLDLKGKLAELAP 135 >gi|152966998|ref|YP_001362782.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans SRS30216] gi|151361515|gb|ABS04518.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans SRS30216] Length = 209 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 19/214 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +I ++G + + D +++V GV ++ TL+ L ++G L +R+D + L Sbjct: 5 VIASVRGQVLAVRLDSAVVEVGGVGMLVLAAPATLAGL-RVGQEALLHTTLVVREDSLTL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F ++Q+ GVG R+A+ +L+ + ++ ++ + ++PGI K Sbjct: 64 FGFADADEKEVFEIVQTASGVGPRMALAMLAVHRPDGIRAAVAAEDHAALVRVPGIGKKT 123 Query: 121 ASRIMTELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG--QD 175 A RI EL G ++ V +S + + + + ALV LGY Sbjct: 124 AQRICLELGDRLGPPSGTAAPVAAPLSAGDARREQV----------VEALVGLGYPLKHA 173 Query: 176 QATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206 VV + ADD + +R ALR +S Sbjct: 174 GDVVDVVVGATPDAGAADDLDVAATLRAALRHLS 207 >gi|73662426|ref|YP_301207.1| Holliday junction DNA helicase RuvA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90135921|sp|Q49Y80|RUVA_STAS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72494941|dbj|BAE18262.1| Holliday junction DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 200 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 5/195 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYIKGTLTELNPTHVVVEASGVGYEIQTP-NSYRFQKYMDHEVVVHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ ++ F+ L V G+G + A+ +L+ + ++ +I +N + + PGI K Sbjct: 60 YGFINQEEKDMFLSLIKVTGIGPKSALAILASSSPNDVKIAIENENDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++ V +N + + P A+ AL LGY + + T Sbjct: 120 ARQIVLDLKGK-VQINDV--DSSQILNTDTQDHANAPIIK-EALLALEALGYSKRELTKV 175 Query: 181 VVSVLKKEKNIADDS 195 S+ K+ + DD+ Sbjct: 176 EKSLSKETFDSVDDA 190 >gi|33861499|ref|NP_893060.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|44888410|sp|Q7V1D3|RUVA_PROMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33634076|emb|CAE19401.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 219 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 15/145 (10%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCL------GKIGDFCTLFVE 50 MI IKG + ++ Y+L++ QG+ Y I+TL + KI + + Sbjct: 1 MISWIKGELVSSWQANNKFYILVNCQGLGY----EIQTLESVFFDINSNKISEKEIILWL 56 Query: 51 THMR-QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV 109 H++ +D LFGF + R +F+ + +++G+G+++ M +L++ + +L+ +I + K Sbjct: 57 KHIKKEDSDMLFGFSTKDQRDFFIQILNIKGIGSQIGMSLLNKFSLNQLITAISNNDKKS 116 Query: 110 IAQIPGISMKIASRIMTELKGKAIS 134 I+ + GI K+ RI+ ELK K I+ Sbjct: 117 ISTVQGIGQKMTERIILELKSKVIN 141 >gi|148983581|ref|ZP_01816900.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP3-BS71] gi|149017853|ref|ZP_01834312.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP23-BS72] gi|168483820|ref|ZP_02708772.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1873-00] gi|168492137|ref|ZP_02716280.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC0288-04] gi|194397075|ref|YP_002036885.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54] gi|225853792|ref|YP_002735304.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA] gi|225855950|ref|YP_002737461.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae P1031] gi|225858040|ref|YP_002739550.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae 70585] gi|226698742|sp|B5E6D0|RUVA_STRP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767389|sp|C1CAI9|RUVA_STRP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767392|sp|C1CBY3|RUVA_STRZJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767393|sp|C1CI73|RUVA_STRZP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147923728|gb|EDK74840.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP3-BS71] gi|147931417|gb|EDK82395.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP23-BS72] gi|172042891|gb|EDT50937.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1873-00] gi|183573620|gb|EDT94148.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC0288-04] gi|194356742|gb|ACF55190.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54] gi|225721170|gb|ACO17024.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae 70585] gi|225722475|gb|ACO18328.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA] gi|225726352|gb|ACO22204.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae P1031] gi|301799335|emb|CBW31870.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae OXC141] Length = 197 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEDQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165 >gi|270291966|ref|ZP_06198181.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143] gi|270279494|gb|EFA25336.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143] Length = 197 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHVS-NPYAYSGQVNQETQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAVQASAENQELEE----------AMEAMLALGY 165 >gi|149175963|ref|ZP_01854580.1| probable holliday junction DNA helicase ruvA [Planctomyces maris DSM 8797] gi|148845117|gb|EDL59463.1| probable holliday junction DNA helicase ruvA [Planctomyces maris DSM 8797] Length = 206 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 22/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP---IRTLSCLGKIGDFCTL----FVETHM 53 MI I+G + L +I V Y ++ P R L L IG +L ++E + Sbjct: 1 MITNIRGELIELSLTEAIISVGAFDYEVFIPEFVRRQLQPL--IGSEISLKTIQYIEGNP 58 Query: 54 RQDQI--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 ++ ++ RL GF+S +R++F L+ SV GVG + + + R E+ +I ++ K + Sbjct: 59 QKGRLTPRLIGFMSHAEREFFELVCSVDGVGVKKTLRAMVR-PVKEVATAIEEKDIKQLT 117 Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 +PGI +A RI+ +L+ K + +V ++ E+ H A AL++LG Sbjct: 118 TLPGIGPAVAERIVAKLRRKMTKFALIVAKEFPA---EEGHTDVFS----EAYEALLSLG 170 Query: 172 YGQDQATTAVVSVL---KKEKNIAD 193 Y +A T V ++ KK K+I + Sbjct: 171 YSATEARTKVETIAAEGKKFKSIEE 195 >gi|32266013|ref|NP_860045.1| Holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC 51449] gi|44888424|sp|Q7VIU0|RUVA_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|32262062|gb|AAP77111.1| holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC 51449] Length = 196 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 13/139 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL---------GKIGDFCTLFVET 51 MI ++G I L Y IDV GV Y + + S L + C + Sbjct: 1 MIVGLRGTIIRLEPMYAEIDVGGVIYGMQMSLNATSMLQTKIDSQPDAPVKIICAQII-- 58 Query: 52 HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 R+D LFGF ++++Q F L + GVG +VA+ +LS T T + I ++ + + Sbjct: 59 --REDAHLLFGFCEEIEKQTFERLIKISGVGPKVAIAILSTYTPTHFAKIIADKDIEALK 116 Query: 112 QIPGISMKIASRIMTELKG 130 ++PGI +K A++IM ++ G Sbjct: 117 KVPGIGVKGAAKIMVDIAG 135 >gi|225164626|ref|ZP_03726870.1| Holliday junction resolvasome DNA-binding subunit-like protein [Opitutaceae bacterium TAV2] gi|224800771|gb|EEG19123.1| Holliday junction resolvasome DNA-binding subunit-like protein [Opitutaceae bacterium TAV2] Length = 219 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + ++++ G Y + P+ T L +G L R+D L Sbjct: 1 MITSIQGLLTEATPLRAVVEINGFGYEVNIPVTTAEKLPAVGAKVKLHTIVIYREDAQTL 60 Query: 61 FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S +R +F L+ + V GVG ++A+ ++SR++ L +I + +++ PGI K Sbjct: 61 YGFASPEERDFFRLMIEQVSGVGPKLALTIMSRMSLPVLEGAIRAGDISSLSKCPGIGKK 120 Query: 120 IASRIMTELKGK 131 A R++ EL+ K Sbjct: 121 TAERLVVELRAK 132 >gi|323465932|gb|ADX69619.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus helveticus H10] Length = 140 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 7/117 (5%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++GF S+ D+ F+ L SV G+G + A+ +++ A L E+I K + + PG+ K Sbjct: 1 MYGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKK 60 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 AS+I+ +LKGK L V + + ++EQ +I P +A+ AL+ LGY Q + Sbjct: 61 TASQIVLDLKGK---LRDYVAR-LDRQDEEQGNI---PPALNDALLALIALGYTQKE 110 >gi|257462985|ref|ZP_05627389.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D12] gi|317060603|ref|ZP_07925088.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12] gi|313686279|gb|EFS23114.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12] Length = 101 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + +Y +DV GV Y +Y +R + ++G +++ H+R+ + +L Sbjct: 1 MFEYLKGFVSYKKPEYFALDVHGVAYRVYISLRMYEKI-ELGQEYQIYIYNHIREGEYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102 GFL + +R+ F LL SV+G+G +A+ LS + +LV I Sbjct: 60 IGFLEEKERKLFELLLSVKGIGISLALAALSTYSVEQLVAYI 101 >gi|291296179|ref|YP_003507577.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279] gi|290471138|gb|ADD28557.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279] Length = 193 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 13/176 (7%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 CP TL+ L + G L + +R+D + LFGF + + F LL SV GVG +VA+ + Sbjct: 30 CPASTLAQLSE-GQEAALHTKLVVREDDLSLFGFADERSLELFELLLSVSGVGPKVALNL 88 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 LS T L ++ + +++ G+ K+A RI EL+GK + ++ + V+ Sbjct: 89 LSSQTPALLARALAEGDLRLLTAAQGVGKKLAERIALELRGKVP--AHLMGEGGRLVHSS 146 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 Q + AL+ LG+ + Q + V + +K A ++I+LAL+A+ Sbjct: 147 QTEEAEL---------ALITLGFREGQVRSIVAEIAQKNPG-AGTQELIKLALKAL 192 >gi|125719033|ref|YP_001036166.1| Holliday junction DNA helicase RuvA [Streptococcus sanguinis SK36] gi|166231448|sp|A3CR11|RUVA_STRSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|125498950|gb|ABN45616.1| Holliday junction DNA helicase ruvA, putative [Streptococcus sanguinis SK36] Length = 196 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGQLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK ++ S + + + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVAAGSPAESKAPVQTADNQELE-------EAMEAMLALGY 164 >gi|170781148|ref|YP_001709480.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis subsp. sepedonicus] gi|189045747|sp|B0REB9|RUVA_CLAMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169155716|emb|CAQ00837.1| holliday junction DNA helicase RuvA [Clavibacter michiganensis subsp. sepedonicus] Length = 214 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + +L++V GV Y + P L + G T+ +R+D + Sbjct: 1 MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL--RHGSEATVLTSLVVREDSLT 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + + F LL V GVG + A+ VL + + +++ ++ ++ GI K Sbjct: 59 LFGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I+ +L GK V Q + + + + + ++AL+ LG+ + A T Sbjct: 119 TAKLIVLQLAGKLF----VTQPRTRSASSAASTVTA------DVVTALIGLGWSERVART 168 Query: 180 --AVVSVLKKEKNI-ADDSQIIRLAL 202 + E+ + AD +++R+AL Sbjct: 169 AVDDAAAAAAEQGLPADMPRLLRVAL 194 >gi|116074623|ref|ZP_01471884.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9916] gi|116067845|gb|EAU73598.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9916] Length = 224 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 3/165 (1%) Query: 45 CTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104 CT ++ R+D L+GFL +R F L SV GVG ++A+ +L AT LV++I+ Sbjct: 56 CTAWIHQVQREDGCMLYGFLEKRERDLFRTLISVNGVGPQMALALLESCGATALVDAIVE 115 Query: 105 QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + + + Q G+ + A R+ EL+ + S + +S V++ + + + Sbjct: 116 GDLRQLTQAQGVGKRTAERLAVELRDRLGSWRAPADDGLSLVDRSDLKALPLQGDPLQEL 175 Query: 165 -SALVNLGYGQDQATTAV--VSVLKKEKNIADDSQIIRLALRAIS 206 L LGY + A+ V+ + D +R +LR +S Sbjct: 176 QQTLEALGYEDLEIRRAMRAVATAAEPPAAGDHDAWLRESLRWLS 220 >gi|296272620|ref|YP_003655251.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM 7299] gi|296096794|gb|ADG92744.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM 7299] Length = 186 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 23/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 MI I G I + IDV G+ Y ++ +++C KI + +L +R+D Sbjct: 1 MIVGINGKIIRKEPTLLHIDVNGLVYEVFV---SVNCSSKIIENNVSLHTTYIIREDSQA 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +++ F + + GVG +VA+ + S T + + + + ++ ++PGI K Sbjct: 58 LYGFIDVNEKKLFDTVIKINGVGPKVALAICSTFTPSSFSQIVSSNDISMLKRVPGIGPK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 ASRI+ EL G I +S +D N +A + AL +LG+ +D Sbjct: 118 GASRILVELSGFVIDGNS--DEDSVGTNMMEASM------------ALESLGFKKD---- 159 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V+S K + + S ++R AL+ + Sbjct: 160 -VISKALKSCSATNTSDLVREALKKL 184 >gi|225860211|ref|YP_002741720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae Taiwan19F-14] gi|298230115|ref|ZP_06963796.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255022|ref|ZP_06978608.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501981|ref|YP_003723921.1| crossover junction endoribonuclease subunit A [Streptococcus pneumoniae TCH8431/19A] gi|254767394|sp|C1CP48|RUVA_STRZT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225726584|gb|ACO22435.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae Taiwan19F-14] gi|298237576|gb|ADI68707.1| crossover junction endoribonuclease subunit A [Streptococcus pneumoniae TCH8431/19A] gi|327390587|gb|EGE88927.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA04375] Length = 197 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEDQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + + S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEE----------AMEAMLALGY 165 >gi|317178761|dbj|BAJ56549.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F30] Length = 183 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 I+V+GV Y + +RT S L + G L + +++D L+GFL + ++ F L + Sbjct: 19 IEVRGVVYEVQVSMRT-SALLQAGQEARLKILQVIKEDVHLLYGFLEESEKILFERLLKI 77 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 GVG R+A+ +LS + E I + K + Q+ GI K+A +IM +L G Sbjct: 78 NGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVQGIGKKLADKIMVDLIG------FF 131 Query: 139 VQQDMSCVNKE 149 +Q + S V E Sbjct: 132 IQDETSPVRNE 142 >gi|33240204|ref|NP_875146.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|44888420|sp|Q7VCI6|RUVA_PROMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33237731|gb|AAP99798.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 222 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 11/183 (6%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 VLI GV Y + R+L L + E H R+D +L GFL+ L+R F L Sbjct: 21 VLISCSGVGYEVQLLSRSLQLLNTSKELILWVHEVH-REDGSQLIGFLNKLERDLFRKLI 79 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI---PGISMKIASRIMTELKGKAI 133 SV GVG ++A+ +L + A +L+ +I K IAQ+ PG+ K A R++ EL+ K Sbjct: 80 SVSGVGPQLAISLLEKNPAEQLISAIT---KKKIAQLTSCPGVGKKTAERLVIELQNK-- 134 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 LS ++ + N + + A S L+NL Y + A + K+I Sbjct: 135 -LSDLIGSSLKKTNN-HLELEYETNVADEVRSTLLNLDYKNSEIEKAFLEFETSSKSIRS 192 Query: 194 DSQ 196 +Q Sbjct: 193 KAQ 195 >gi|194335574|ref|YP_002017368.1| Holliday junction DNA helicase RuvA [Pelodictyon phaeoclathratiforme BU-1] gi|229560112|sp|B4SCR7|RUVA_PELPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194308051|gb|ACF42751.1| Holliday junction DNA helicase RuvA [Pelodictyon phaeoclathratiforme BU-1] Length = 200 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + + V+++V G+ Y T L + G LF +R+D ++L Sbjct: 1 MFAYFRGKLTSVLPEEVVVEVSGIAYQFLISAATHRQLPEQGSEVFLFSHLVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LL GVG ++A+ +LS ++ ++ ++I+ + + I G+ K Sbjct: 61 YGFSGEEERQLFRLLLLTTGVGPKLALALLSGLSVQDIHDAILTNTPERLYGITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + LS V A + S +A++ALV LG+ + A Sbjct: 121 AARIILELRDKVLKLSPV------SALASPARLSST-LLRDDAVNALVTLGFSRIIVQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VV++L++ + + ++I+ AL +I Sbjct: 174 VVAILEQNPGLTVE-EVIKAALVSI 197 >gi|296393859|ref|YP_003658743.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM 44985] gi|296181006|gb|ADG97912.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM 44985] Length = 199 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQDQI 58 MI I+G + D+V+++ G+ + + T + + + T F+ +R+D Sbjct: 1 MIASIRGEAVEVGADHVVVECAGLGHHVVVLPSTAAAATRGAEVRLATSFI---VREDAQ 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF R F +L++V GVG ++AM VLS + L +I + + ++PG+ Sbjct: 58 TLYGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPVALRRAIGEGDLGALTKVPGVGK 117 Query: 119 KIASRIMTELK----GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 ++A R+ ELK G + +++ + S + ++Q + LV LG+ Sbjct: 118 RVAERLALELKEKIGGPPSAAANLGAPEGSALVRQQ------------VVDGLVGLGFPL 165 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLAL 202 A +A SV+ +E A + +R AL Sbjct: 166 KPAESAADSVM-QENPEASPAVALRGAL 192 >gi|56421127|ref|YP_148445.1| Holliday junction DNA helicase RuvA [Geobacillus kaustophilus HTA426] gi|297529245|ref|YP_003670520.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3] gi|81346764|sp|Q5KWQ9|RUVA_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56380969|dbj|BAD76877.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426] gi|297252497|gb|ADI25943.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3] Length = 194 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P + T++ ++R+ L Sbjct: 1 MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGK 131 A +++ +LKGK Sbjct: 120 ARQMILDLKGK 130 >gi|261418393|ref|YP_003252075.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61] gi|319767648|ref|YP_004133149.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52] gi|261374850|gb|ACX77593.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61] gi|317112514|gb|ADU95006.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52] Length = 194 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P + T++ ++R+ L Sbjct: 1 MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGK 131 A +++ +LKGK Sbjct: 120 ARQMILDLKGK 130 >gi|194476717|ref|YP_002048896.1| putative holliday junction DNA helicase RuvA [Paulinella chromatophora] gi|171191724|gb|ACB42686.1| putative holliday junction DNA helicase RuvA [Paulinella chromatophora] Length = 215 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 103/214 (48%), Gaps = 11/214 (5%) Query: 1 MIGKIKGNI-----EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI ++G + +G Y + L++ G+ Y +Y R L K + L++ +R+ Sbjct: 1 MISWLRGELLKSWQQGTY-NVALLNCGGIGYEVYLNRRDWEDLPKTREILELYIHMLVRE 59 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 Q L+GF+ DR F + ++ G+G ++A+ + + + L+E+II + + + G Sbjct: 60 KQWTLYGFIEFDDRDIFREIININGIGPQLALALQTELRGPRLIEAIINGDLVTLTKAHG 119 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I + A R+ TEL+ + ++L + + Q + + + + L LGY + Sbjct: 120 IGRRTAERLSTELRSRFVNLYHTNEVYLKQEGSIQG-VLNDSDLVHDIQNTLKTLGYNKL 178 Query: 176 QATTAVVSVLKKEKNIADDSQI---IRLALRAIS 206 + A ++ LK + ++ ++S +R AL +S Sbjct: 179 EIQRA-INKLKSKSSLVENSDFDVWLREALHWLS 211 >gi|257870592|ref|ZP_05650245.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2] gi|257804756|gb|EEV33578.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2] Length = 196 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/203 (22%), Positives = 99/203 (48%), Gaps = 24/203 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G + ++ Y++++ G+ Y + + GK+ +++ +R+D L+GF + Sbjct: 7 GKVTDIFPAYIVVETHGIGYQVAFG-NPYAFSGKLNQEVKIYLHQVIREDAHSLYGFSTL 65 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +Q F+ L SV G+G + A+ +++ L+ ++ + + + PG+ K A +++ Sbjct: 66 EGKQLFLKLISVSGIGPKSALAIMANEDHAGLITAVENGDVTYLTKFPGVGKKTAQQMIL 125 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVSVL 185 +LKGK L V +E ++ + A++ A++AL LGY + + + Sbjct: 126 DLKGKVAEL----------VGEEPTAPVTVANTALDEAMAALKALGYSEKE-------IK 168 Query: 186 KKEKNIADDS-----QIIRLALR 203 K EK +A ++ + +R AL+ Sbjct: 169 KAEKYLAPNTTKSTDEYLREALK 191 >gi|227534464|ref|ZP_03964513.1| crossover junction endoribonuclease subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187863|gb|EEI67930.1| crossover junction endoribonuclease subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 212 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M +G I+ + Y++IDV G+ + ++ P + G+ ++V+ +R + Sbjct: 15 MYEYFEGIIQAVTPAYIVIDVHGIGFRLLVANPYHF-----EAGEQKRVYVQLIIRDNDQ 69 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF D++ F L +V G+G + A+ +L+ +++ L +I + K + + PGI Sbjct: 70 TLYGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGK 129 Query: 119 KIASRIMTELKGK 131 K A++I+ +LKGK Sbjct: 130 KTAAQIILDLKGK 142 >gi|83590537|ref|YP_430546.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica ATCC 39073] gi|123725675|sp|Q2RHT6|RUVA_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83573451|gb|ABC20003.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica ATCC 39073] Length = 202 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 6/131 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLS--CLGKIGDFCTLFVETHMRQDQI 58 MIG ++G + + + +L++ G+ +++ RT++ G ++ + +R+D + Sbjct: 1 MIGYLRGRLHLVTPEGILLETGGIGWLV----RTVTNRSWPAPGTEIAVYTQLVVREDAM 56 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF + F LL+ V G+G R A+ +L +L +I +S + +PGI Sbjct: 57 ELYGFTRPEELHLFTLLRGVNGIGPRGALQILGAAKPEQLSRAIAAGDSAFLTALPGIGA 116 Query: 119 KIASRIMTELK 129 K A R++ ELK Sbjct: 117 KKAQRLLLELK 127 >gi|322392518|ref|ZP_08065978.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus peroris ATCC 700780] gi|321144510|gb|EFX39911.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus peroris ATCC 700780] Length = 197 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQEAQIYVHQVVREDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKRLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172 A +++ +L+GK + V D+ + PS + N A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVV----VAGDDLPAK-------TAAPSSSDNQELEEAMEAMLALGY 165 >gi|116494312|ref|YP_806046.1| Holliday junction DNA helicase RuvA [Lactobacillus casei ATCC 334] gi|191637648|ref|YP_001986814.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BL23] gi|239629698|ref|ZP_04672729.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065824|ref|YP_003787847.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus casei str. Zhang] gi|122264259|sp|Q03B18|RUVA_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560092|sp|B3WC55|RUVA_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116104462|gb|ABJ69604.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus casei ATCC 334] gi|190711950|emb|CAQ65956.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus casei BL23] gi|239528384|gb|EEQ67385.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438231|gb|ADK17997.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus casei str. Zhang] gi|327381703|gb|AEA53179.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W] gi|327384869|gb|AEA56343.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II] Length = 198 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M +G I+ + Y++IDV G+ + ++ P + G+ ++V+ +R + Sbjct: 1 MYEYFEGIIQAVTPAYIVIDVHGIGFRLLVANPYHF-----EAGEQKRVYVQLIIRDNDQ 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF D++ F L +V G+G + A+ +L+ +++ L +I + K + + PGI Sbjct: 56 TLYGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGK 115 Query: 119 KIASRIMTELKGK 131 K A++I+ +LKGK Sbjct: 116 KTAAQIILDLKGK 128 >gi|160902900|ref|YP_001568481.1| helix-hairpin-helix DNA-binding motif-containing protein [Petrotoga mobilis SJ95] gi|254767380|sp|A9BIJ5|RUVA_PETMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160360544|gb|ABX32158.1| helix-hairpin-helix motif [Petrotoga mobilis SJ95] Length = 190 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 1/128 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI IE ++ VLI + GV + P + K GD F + + L Sbjct: 1 MIRKINATIEDFEDEKVLIKI-GVLTLEAYPSLNVIRYFKKGDQYEFFASLEISEWNTSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F ++R F L+ V +G R+A +L + A E ++ I Q++ +++ +PGI K Sbjct: 60 YIFKDKIERDVFESLKKVSKIGPRIASKILRKTDAEEFIQMINSQDTALLSSLPGIGKKT 119 Query: 121 ASRIMTEL 128 A R+++EL Sbjct: 120 AERLISEL 127 >gi|24380422|ref|NP_722377.1| Holliday junction DNA helicase RuvA [Streptococcus mutans UA159] gi|44888487|sp|Q8CWW3|RUVA_STRMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24378447|gb|AAN59683.1|AE015030_13 putative Holliday junction DNA helicase RuvA [Streptococcus mutans UA159] Length = 197 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 87/178 (48%), Gaps = 11/178 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKGN+ + Y++++ G+ Y+I S +I +++ +R+D L Sbjct: 1 MYDYIKGNLTKITAKYIVLETGGLGYVINVA-NPYSFSNQINQAIQIYIHHVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV++I + + + P I K Sbjct: 60 YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A +++ +L GK + ++ V + +S +N Q A+ AL+ LGY ++ Sbjct: 120 AQQMVLDLAGKFVDINEVSTDKSKVSTINNNQE--------LEEAVEALLALGYKTNE 169 >gi|160934125|ref|ZP_02081512.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753] gi|156866798|gb|EDO60170.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753] Length = 168 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 10/175 (5%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L IG L+ ++R+D + LFGF S + F LL SV GVG +V + +LS Sbjct: 1 MNTQRSLPAIGKEAVLYTHMNVREDAVDLFGFSSLAELNCFKLLTSVSGVGPKVGLAILS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ ++ ++ + K + G+ K+A R++ ELK K +L ++++ Sbjct: 61 VLSPEQVAVAVAAGDFKTLTMAQGVGNKLAQRVILELKDKLKALGG--GEEVTAAAGVVN 118 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A A++AL LGY + V V+ K + ++IRL L+A++ Sbjct: 119 AAGN----AAEAMNALTVLGY----TPSDVAPVVAKFDSSLPVEELIRLTLKAMA 165 >gi|169829378|ref|YP_001699536.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus sphaericus C3-41] gi|229560099|sp|B1HVA4|RUVA_LYSSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|168993866|gb|ACA41406.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus sphaericus C3-41] Length = 206 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 26/188 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56 M +KG I + +Y++++ +G+ + + P RT + +I +V H+R+D Sbjct: 1 MYDYLKGLITRITPEYIVLEQKGIGWQLNTPNPFAFRTSAMEQQI------YVHLHVRED 54 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + R+ F L V G+G + A+ +L+ +++ +I ++ + + PG+ Sbjct: 55 AQVLYGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDETFLVKFPGV 114 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--------AISALV 168 K A +++ +LKGK SL ++ + E +P F ++ AI AL Sbjct: 115 GKKTARQMILDLKGKLGSLLETIE--LPSTEDE------LPLFGVHPYKHELEEAILALA 166 Query: 169 NLGYGQDQ 176 LGY + + Sbjct: 167 ALGYSEKE 174 >gi|290581353|ref|YP_003485745.1| putative Holliday junction DNA helicase [Streptococcus mutans NN2025] gi|254998252|dbj|BAH88853.1| putative Holliday junction DNA helicase [Streptococcus mutans NN2025] Length = 198 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 87/178 (48%), Gaps = 11/178 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKGN+ + Y++++ G+ Y+I S +I +++ +R+D L Sbjct: 2 MYDYIKGNLTKITAKYIVLEAGGLGYVINVA-NPYSFSNQINQAIQIYIHHVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV++I + + + P I K Sbjct: 61 YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV--QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A +++ +L GK + ++ V + +S +N Q A+ AL+ LGY ++ Sbjct: 121 AQQMVLDLAGKFVDINEVSTDKSKVSTINNNQE--------LEEAVEALLALGYKTNE 170 >gi|319946048|ref|ZP_08020297.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus australis ATCC 700641] gi|319747856|gb|EFW00101.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus australis ATCC 700641] Length = 197 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHVA-NPYAYSGKMNQKVQVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L Q + V +E + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKINLDLEDAPAQSKAKVAEENQALEE-------AMEAMLALGY 165 >gi|296875591|ref|ZP_06899662.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 15912] gi|296433388|gb|EFH19164.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 15912] Length = 197 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHVA-NPYAYSGKMNQEVQVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L Q + V +E + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKINLDLEDAPAQSKAKVAEENQALEE-------AMEAMLALGY 165 >gi|322390453|ref|ZP_08063973.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 903] gi|321142852|gb|EFX38310.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 903] Length = 197 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHVA-NPYAYSGKMNQEVQVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L Q + V +E + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKINLDLEDAPAQSKAKVAEENQALEE-------AMEAMLALGY 165 >gi|312866920|ref|ZP_07727133.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis F0405] gi|311097703|gb|EFQ55934.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis F0405] Length = 197 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHVA-NPYAYSGKMNQEVHVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L Q + V +E + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKINLDLEDAPAQSKAKVAEENQALEE-------AMEAMLALGY 165 >gi|283781353|ref|YP_003372108.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM 6068] gi|283439806|gb|ADB18248.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM 6068] Length = 210 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 18/202 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY---IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 MI +I + L +D ++ Y I RTLS +G +L ++ D Sbjct: 1 MITRITAKLIQLTDDAAILSAPPFDYEVLIAAVSRRTLSS--SVGQEISLHTIHYLDGDP 58 Query: 58 ------IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 RL GF+S+++R++F + SV GVGA+ A+ + R E+ I Q+++ ++ Sbjct: 59 SRGKVTPRLVGFVSEVEREFFEMFCSVDGVGAKKALRAMQR-PVQEISVMIEEQDAEGLS 117 Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 +PGI A RI+ +L+ K + +V ++ + + + + + + AL LG Sbjct: 118 SLPGIGAATAERIIAKLRRKMSKFALLVARESAGETEIKRDVVEL------SFEALRTLG 171 Query: 172 YGQDQATTAVVSVLKKEKNIAD 193 + + A + SVLK +K AD Sbjct: 172 HSESDARKLLDSVLKSKKKFAD 193 >gi|306826018|ref|ZP_07459354.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431734|gb|EFM34714.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 197 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHVA-NPYAYSGQVNQENQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L + V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAVQASNENQELEE----------AMEAMLALGY 165 >gi|262283650|ref|ZP_06061415.1| Holliday junction DNA helicase motor protein [Streptococcus sp. 2_1_36FAA] gi|262260707|gb|EEY79408.1| Holliday junction DNA helicase motor protein [Streptococcus sp. 2_1_36FAA] Length = 197 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 7/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFAAEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + + D+S + QA + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVV----IAGDDLSAKDAVQA--SNENQELEEAMEAMLALGY 165 >gi|332203341|gb|EGJ17408.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA47368] Length = 197 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 15/176 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHVA-NPYAYSGQVNQEDQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAI----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + L V S N+E A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVAVKASAENQELEE----------AMEAMLALGY 165 >gi|152992417|ref|YP_001358138.1| Holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1] gi|166231450|sp|A6Q8H2|RUVA_SULNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151424278|dbj|BAF71781.1| holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1] Length = 185 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 2/128 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G +E ++ ++V G+ Y I I T + + + LF+ +R+D L Sbjct: 1 MIVGMEGIVERRDPTFIHLNVNGIIYEIQVSINTSNAIQE--KRVKLFITQVIREDADLL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +++ F + + GVG +V + + S T + + ++ ++ ++PGI K Sbjct: 59 FGFMDTNEKKMFDTVLKINGVGPKVGLAICSTFTPETFAKVVASKDVSMLKRVPGIGPKA 118 Query: 121 ASRIMTEL 128 ASRI+ EL Sbjct: 119 ASRILVEL 126 >gi|308271856|emb|CBX28464.1| Holliday junction ATP-dependent DNA helicase ruvA [uncultured Desulfobacterium sp.] Length = 204 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 13/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58 MIG ++G + + +L+ V V Y I P + L +GD TL++ H + Q Sbjct: 1 MIGYLEGKLLKKDSERILLLVNHVGYEILLPAIVMETLNTRSVGDEITLYIYYHQSEKQP 60 Query: 59 R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L GF ++++++F SV+ +G A+ L+ ++ ++ +I +++ + Q+ GI Sbjct: 61 KPVLIGFNLEVEKEFFQYFISVEDIGPLKAVKALT-MSVRDISRAIESKDAAALKQLKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175 + A +I+ L+GK + + + EQ + I LV+ LGY Sbjct: 120 GNRTAQKIIATLEGKMNKFALIRKS-------EQTYDSVSEDIGQKVIDLLVSQLGYKPG 172 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A T VV LK+ K I ++ R Sbjct: 173 EAKTMVVQALKRNKFITSPEDLLEEVYRG 201 >gi|270290977|ref|ZP_06197200.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4] gi|304385248|ref|ZP_07367593.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus acidilactici DSM 20284] gi|270280373|gb|EFA26208.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4] gi|304328455|gb|EFL95676.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus acidilactici DSM 20284] Length = 195 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 19/163 (11%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 Y++IDV GV Y++ S K + ++V + + + L+GF +D++ F+ L Sbjct: 16 YIVIDVNGVGYLVNV-ANPYSF--KPDEKQKVYVHQAVSETENTLYGFKKYVDKELFLNL 72 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 V+G+G + A+ +L+ + ++ + + + P I K A +I+ +LKGK S Sbjct: 73 LKVKGIGPKSALAILANDDHQGFIRAVNNDDVNYLKKFPKIGPKAAKQIILDLKGKITS- 131 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQ 174 N+ + MP+ N AI AL LGY + Sbjct: 132 -----------NEPSGPLFEMPTTTNNTLDEAIEALAALGYSE 163 >gi|154174555|ref|YP_001408214.1| Holliday junction DNA helicase RuvA [Campylobacter curvus 525.92] gi|166230533|sp|A7GYC2|RUVA_CAMC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|112802462|gb|EAT99806.1| holliday junction DNA helicase RuvA [Campylobacter curvus 525.92] Length = 184 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 28/209 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQG-VCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQ 57 MI I+G I +V++ G V Y ++ +L C K+ G+ L +R+D Sbjct: 1 MIRAIEGIITKKEPAFVVLKTAGGVSYGLFI---SLFCSAKLSKGEKVELNTTQIIREDA 57 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GFL +++ F +L + G+GA AM + S ++ ++I ++ +PGI Sbjct: 58 NLLYGFLDTNEQKMFEMLIKLNGIGASTAMAICSSLSPNAFSNAVINGDADTFKSVPGIG 117 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A RI+ EL D ++ E S+P + A+ AL LG+ +++ Sbjct: 118 PKTARRIIAEL------------SDAKLISDE-----SVPGYQNEALLALEALGFKREK- 159 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +V +L K+ + S++++ AL+ ++ Sbjct: 160 ---IVKILPDLKSTS-TSELVKEALKKLA 184 >gi|45657032|ref|YP_001118.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81407392|sp|Q72T73|RUVA_LEPIC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|45600269|gb|AAS69755.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 212 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 39/228 (17%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYII------YCPIRTLSCLGKIGDFCTLFVETHMR 54 MI +KG + L +V I+ G+ Y + Y ++ L L ++ +F + R Sbjct: 1 MISGLKGILRKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQ--LQIFHSINER 58 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +LFGFL++ D+++F +++ +QG+G A+ +LS +A +L + K + +IP Sbjct: 59 GQ--KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEVKELEKIP 116 Query: 115 GISMKIASRIMTELKGK---------------AISLSSVVQ--QDMSCVNKEQAHICSMP 157 + K + +I E+K ++ L+S++Q ++M+ K + I Sbjct: 117 KVKGKTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVIL--- 173 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 LV LG+ + A+ V VLK + D +IIR L+++ Sbjct: 174 --------GLVQLGFEEKTASKEVDKVLKIFSS-NDPGEIIREILKSL 212 >gi|329116352|ref|ZP_08245069.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD 2020] gi|326906757|gb|EGE53671.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD 2020] Length = 197 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGQLTKITAKYIVVEANGLGYIIYVA-NPYSFSDSVNQQVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEEEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + +D + +K A AI AL+ LGY Sbjct: 120 AQQMILDLAGKFVE----APKDSAPTSKANAGGNLQLD---EAIEALLALGY 164 >gi|148272996|ref|YP_001222557.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166230540|sp|A5CS07|RUVA_CLAM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147830926|emb|CAN01870.1| Holliday junction DNA helicase subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 214 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY-IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + +L++V GV Y + P L + G T+ +R+D + Sbjct: 1 MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL--RNGSEATVLTSLVVREDSLT 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + + F LL V GVG + A+ VL + + +++ ++ ++ GI K Sbjct: 59 LFGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I+ +L GK + S + A + ++AL+ LG+ + A T Sbjct: 119 TAKLIVLQLAGKLFVTQPRARSATSAASTVTADV----------VTALIGLGWSERVART 168 Query: 180 AVVSVLKKEKN---IADDSQIIRLAL 202 AV + AD +++R+AL Sbjct: 169 AVDDAAAAAADQGLPADMPRLLRVAL 194 >gi|332685820|ref|YP_004455594.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC 35311] gi|332369829|dbj|BAK20785.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC 35311] Length = 201 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I + Y++I+ G+ Y I GK+ +++ +R+D L Sbjct: 1 MFEYIIGTITFINPYYLVIETNGIGYQILVS-NPYHYSGKLEKKVKIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L V G+G + A+ +L+ L+ +I +N+ + + PG+ K Sbjct: 60 YGFREMEEKQLFLKLIGVSGIGPKSALAILALEDHGGLINAIADENASYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A +++ +LKGK L + N+ + A+N A+ AL LGY D+ Sbjct: 120 AQQMVLDLKGKLDELEMTPTAVKAMTNQPKVKTNQ----ALNEALEALCALGY-NDREIK 174 Query: 180 AVVSVLKKEKNIADD---SQIIRLALR 203 + LK + + D SQ ++L ++ Sbjct: 175 RITPDLKSMDSQSTDQYLSQALKLIMK 201 >gi|260893478|ref|YP_003239575.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4] gi|260865619|gb|ACX52725.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4] Length = 193 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 19/181 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G++ +I V G+ ++ P+ L G L+ +R+D+ + Sbjct: 1 MLAFLRGSVLEKERGRAVILVGGMGLEVFLPLSLYERLPAKGGEVELYTCLLLREDRPEI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R +F+ L + GVG + A+ +LS + EL E+I ++ + + +PG+ K Sbjct: 61 YGFGDREERDFFLRLLKIGGVGPKTALALLSCFSVEELREAIRSEDLEKLTVVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK ++ + V E A +A++AL+NLGY + +A A Sbjct: 121 ARRLLLELK----------EEKGAPVEGEAAA---------DAVAALINLGYRRREAEEA 161 Query: 181 V 181 V Sbjct: 162 V 162 >gi|94991379|ref|YP_599479.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS10270] gi|123382379|sp|Q1JEH4|RUVA_STRPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94544887|gb|ABF34935.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes MGAS10270] Length = 198 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172 A +++ +L GK + +E H + + A N AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165 >gi|325686747|gb|EGD28773.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK72] Length = 218 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK VV D +K I A+ A++ LGY Sbjct: 142 AQQMVLDLEGK------VVVADGPAESKAPVQIVDNQELE-EAMEAMLALGY 186 >gi|169333981|ref|ZP_02861174.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM 17244] gi|169258698|gb|EDS72664.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM 17244] Length = 199 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 106/215 (49%), Gaps = 26/215 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQ 57 M IKG++ + E Y+ I+ + GV +++ T + L I D + V T+M R++ Sbjct: 1 MFDYIKGDVTDIREGYLTIENKSGVGFLLNVSENTATDL--INDREDVKVYTYMAVREND 58 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + LFGF + +R+ F L +V +G ++A+ +LS ++ +V +I+ ++ K + G+ Sbjct: 59 VSLFGFSTLFEREIFFKLLTVPKIGPKIALSILSALSPNMIVAAIMNKDYKSLCTANGVG 118 Query: 118 MKIASRIMTELKGKAISLSSVVQ---QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 K A +I+ L+ K L + + DM+ N + AI L +LG+ + Sbjct: 119 KKAAEQIVVTLQDKFGDLPEIEEITVNDMNINNDLKDE----------AILGLTSLGFDR 168 Query: 175 DQATTAVVSVLKKEKNIADD---SQIIRLALRAIS 206 A V +E ++ DD I+ LAL+ ++ Sbjct: 169 AYAAKIV-----REISVDDDLTIEDILSLALQKVN 198 >gi|15675869|ref|NP_270043.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes M1 GAS] gi|21911339|ref|NP_665607.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS315] gi|28896713|ref|NP_803063.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes SSI-1] gi|71911615|ref|YP_283165.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS5005] gi|94995290|ref|YP_603388.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS10750] gi|54039576|sp|P66752|RUVA_STRP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042204|sp|P66751|RUVA_STRP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123257497|sp|Q1J492|RUVA_STRPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13623103|gb|AAK34764.1| putative Holiday junction DNA helicase [Streptococcus pyogenes M1 GAS] gi|21905554|gb|AAM80410.1| putative Holiday junction DNA helicase [Streptococcus pyogenes MGAS315] gi|28811967|dbj|BAC64896.1| putative Holliday junction DNA helicase [Streptococcus pyogenes SSI-1] gi|71854397|gb|AAZ52420.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS5005] gi|94548798|gb|ABF38844.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes MGAS10750] Length = 198 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172 A +++ +L GK + +E H + + A N AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165 >gi|56808549|ref|ZP_00366283.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Streptococcus pyogenes M49 591] Length = 198 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172 A +++ +L GK + +E H + + A N AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165 >gi|50915147|ref|YP_061119.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS10394] gi|139474559|ref|YP_001129275.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str. Manfredo] gi|68053071|sp|Q5X9H7|RUVA_STRP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166231446|sp|A2RGV1|RUVA_STRPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|50904221|gb|AAT87936.1| Holliday junction DNA helicase [Streptococcus pyogenes MGAS10394] gi|134272806|emb|CAM31083.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str. Manfredo] Length = 198 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172 A +++ +L GK + +E H + + A N AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165 >gi|94989443|ref|YP_597544.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS9429] gi|94993332|ref|YP_601431.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS2096] gi|123080353|sp|Q1JJH3|RUVA_STRPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123382245|sp|Q1J9C4|RUVA_STRPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94542951|gb|ABF33000.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS9429] gi|94546840|gb|ABF36887.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes MGAS2096] Length = 198 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 7/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + + NK A + AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK--AGNTQLDE----AIEALLALGY 165 >gi|88856266|ref|ZP_01130926.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] gi|88814585|gb|EAR24447.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] Length = 205 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC-PIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + ++I+V GV + P LS ++G L +R+D + Sbjct: 1 MISSLRGTVLAAVGTSIVIEVGGVGLSVSVIPEHALSV--RVGAETQLNTVLIVREDDLS 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + + F LL+ V GVG + AMGVL+ +T ++ ++ +N ++ GI K Sbjct: 59 LYGFRTREELDVFALLRGVTGVGPKSAMGVLAALTPDDIARAVAEENDSAFRKVTGIGPK 118 Query: 120 IASRIMTELKGK 131 A I+ L GK Sbjct: 119 TAKLIVLNLTGK 130 >gi|323350703|ref|ZP_08086364.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis VMC66] gi|322123123|gb|EFX94814.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis VMC66] Length = 218 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGQLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK ++ + + + + A+ A++ LGY Sbjct: 142 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQELEE-------AMEAMLALGY 186 >gi|71904448|ref|YP_281251.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS6180] gi|90135995|sp|Q48QW4|RUVA_STRPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71803543|gb|AAX72896.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS6180] Length = 198 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 7/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + + NK A + AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK--AGNTQLDE----AIEALLALGY 165 >gi|284044634|ref|YP_003394974.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684] gi|283948855|gb|ADB51599.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684] Length = 198 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 23/159 (14%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y + TL + G TL +R D ++L+GF ++ +R F++L VQ VG +V Sbjct: 31 YRLAVSSETLKQVPAAGKRVTLHSHLIVRDDALQLYGFATEEERDLFLMLLGVQSVGPKV 90 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA-------ISLSSV 138 A+ VLS T EL+ ++ ++ +PGI + A RI+ EL+ KA SV Sbjct: 91 ALAVLSGGTPRELLGALAAGDAARFQAVPGIGKRTAERIIVELREKAGVAVPDDAVHGSV 150 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 D + +E LV LG+ D+A Sbjct: 151 ASDDPRTLARE----------------GLVGLGFSLDEA 173 >gi|325697267|gb|EGD39153.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK160] Length = 196 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGQLHQEAKVYVHQVVREDTELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK VV D +K A+ A++ LGY Sbjct: 120 AQQMVLDLEGK------VVAADGPSESKAPVQTADNQELE-EAMEAMLALGY 164 >gi|324992648|gb|EGC24569.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK405] gi|324995823|gb|EGC27734.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK678] gi|327460051|gb|EGF06390.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1] gi|327488641|gb|EGF20441.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1058] Length = 218 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGY 172 A +++ +L+GK VV D +K A + +M + + A+ A++ LGY Sbjct: 142 AQQMVLDLEGK------VVAADGPSESK--APVQTMDNQELEEAMEAMLALGY 186 >gi|209560229|ref|YP_002286701.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes NZ131] gi|226698743|sp|B5XJ07|RUVA_STRPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209541430|gb|ACI62006.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes NZ131] Length = 198 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 17/177 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTHSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-----AISALVNLGY 172 A +++ +L GK + +E H + + A N AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVEAP-----------QETGHTKARSNKAGNTQLDEAIEALLALGY 165 >gi|332360160|gb|EGJ37974.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1056] Length = 196 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG + + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIVSKITAKYIVLEVNSIGYILHVA-NPYAYSGRLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK ++ + + + + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQELE-------EAMEAMLALGY 164 >gi|325695327|gb|EGD37227.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK150] gi|332365307|gb|EGJ43070.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1059] Length = 218 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK ++ + + + + A+ A++ LGY Sbjct: 142 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQELEE-------AMEAMLALGY 186 >gi|331701280|ref|YP_004398239.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus buchneri NRRL B-30929] gi|329128623|gb|AEB73176.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus buchneri NRRL B-30929] Length = 199 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 12/201 (5%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62 ++G + + ++++ V GV Y+I P R K+ +++ + I LFG Sbjct: 5 LEGTVVDITPTHIVLLVGGVGYLINTADPYRFNVDEKKV---IRVYIYQSVSDTAILLFG 61 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 F + D+Q F L SV G+G + A+ +L+ L+ +I ++ K + + PG+ K A Sbjct: 62 FATIEDKQIFEKLISVSGIGPKSALAILAGNDRDGLITAINNEDVKFLTKFPGVGKKTAR 121 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 +I+ +++GK L + +S ++ S P A +A+SAL LGYG Q A+ Sbjct: 122 QIILDMQGK---LDDIATNGVSLAQPLGSNEKS-PELA-DALSALEALGYGAKQ-IAAIE 175 Query: 183 SVLKKEKNIADDSQIIRLALR 203 L K+ +++ D + + L L+ Sbjct: 176 PDLVKQADLSTD-EYLSLGLK 195 >gi|87124238|ref|ZP_01080087.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9917] gi|86167810|gb|EAQ69068.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9917] Length = 216 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 86/177 (48%), Gaps = 6/177 (3%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G+ +E LI GV Y + R ++ + TL++ ++D Sbjct: 1 MIGWLQGDRIDTWEQGSRRGWLIACAGVGYEVQLSERHMADPEQQRQ-VTLWIHQVQKED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F L SV GVG +V + +L+ A ELV++I+ + + ++Q G+ Sbjct: 60 GSSLFGFPERRERDLFRQLISVNGVGPQVGLALLACWRADELVDAILDGDVRRLSQAQGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGY 172 + A R+ EL+ + + + +S V+++ H + + + + L +LGY Sbjct: 120 GKRTAERLAVELRDRLAAGRHQMDAPLSLVDRQDLHALPIAADPLQDLQLTLTSLGY 176 >gi|324989663|gb|EGC21607.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK353] gi|332363708|gb|EGJ41488.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK49] Length = 218 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNVGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK VV D +K A+ A++ LGY Sbjct: 142 AQQMVLDLEGK------VVAADGQAESKAPVQTADNQELE-EAMEAMLALGY 186 >gi|282852794|ref|ZP_06262136.1| holliday junction DNA helicase RuvA, N-terminal domain protein [Lactobacillus gasseri 224-1] gi|282556536|gb|EFB62156.1| holliday junction DNA helicase RuvA, N-terminal domain protein [Lactobacillus gasseri 224-1] Length = 122 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV++DV G+ Y I CP + T++VE +R I L Sbjct: 1 MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSY---QENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ ++ Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKRL 117 Query: 121 ASRI 124 R+ Sbjct: 118 LLRL 121 >gi|157150589|ref|YP_001451298.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str. Challis substr. CH1] gi|189045776|sp|A8AZT8|RUVA_STRGC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157075383|gb|ABV10066.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str. Challis substr. CH1] Length = 196 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK ++ + + + + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQELE-------EAMEAMLALGY 164 >gi|297624718|ref|YP_003706152.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM 17093] gi|297165898|gb|ADI15609.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM 17093] Length = 208 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 13/177 (7%) Query: 28 IYCPIRTLS-CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD-RQWFMLLQSVQGVGARV 85 ++ P TL C ++G L ++++ + L+GF D D F L V GVG ++ Sbjct: 39 VFAPKPTLMVC--RVGSAVRLHTYFLVKEELLALYGF-HDRDLHTLFTHLIGVSGVGPKL 95 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 A+ +LS + L +I+ ++ ++A PG+ K+A RI+ +LK K + ++ ++ Sbjct: 96 ALALLSSMQTPLLAGAILQGDAGLLASTPGVGKKMAERIILDLKNK------LPEELLAP 149 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLAL 202 + + S P+ A +A+ AL+ LGY + Q V + KE A +IR AL Sbjct: 150 GARGKVTTLSSPA-AEDAVGALLALGYRETQVKGVVAQLALKEPE-AGAETLIRKAL 204 >gi|223933912|ref|ZP_03625874.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591] gi|302023155|ref|ZP_07248366.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05HAS68] gi|330831910|ref|YP_004400735.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3] gi|223897414|gb|EEF63813.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591] gi|329306133|gb|AEB80549.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3] Length = 196 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ QGV YI+ + G++ T++ +R+D L Sbjct: 1 MYDYIKGILTKITAKYIVVETQGVGYILQVA-NPYAYSGQVQQEVTVYTHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV +I +N + + P I K Sbjct: 60 YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGK 131 A +++ +L+GK Sbjct: 120 AQQMILDLEGK 130 >gi|325689191|gb|EGD31198.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK115] Length = 218 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGQLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK VV D +K A+ A++ LGY Sbjct: 142 AQQMVLDLEGK------VVVADGPAESKAPVQTVDNQELE-EAMEAMLALGY 186 >gi|319940111|ref|ZP_08014465.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus anginosus 1_2_62CV] gi|319810825|gb|EFW07152.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus anginosus 1_2_62CV] Length = 196 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG + + Y++++V + YI++ + G++ +FV +R+D L Sbjct: 1 MYEYFKGILSKITAKYIVVEVGQIGYILHVA-NPYAYSGQVNQEIQVFVHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK ++ +Q + + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVATGVAPKQVAVAATSDNKELEE-------AMEAMLALGY 164 >gi|313682066|ref|YP_004059804.1| holliday junction DNA helicase subunit ruva [Sulfuricurvum kujiense DSM 16994] gi|313154926|gb|ADR33604.1| Holliday junction DNA helicase subunit RuvA [Sulfuricurvum kujiense DSM 16994] Length = 187 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G IE V ++V GV Y ++ + T S +G + L +R+D +L Sbjct: 1 MIIGLDGIIEYKEPSSVHLNVNGVIYEVFISLHTYSSIGS--EKVKLHTHHVIREDAQQL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F + + G+G + A+ + S T + I ++ + ++PGI K Sbjct: 59 YGFEQKSEKILFEGMLKINGIGPKAALAICSTFTPEQFAGIISSKDINALKKVPGIGPKS 118 Query: 121 ASRIMTELKG 130 A RIM EL G Sbjct: 119 AGRIMVELAG 128 >gi|29374722|ref|NP_813874.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583] gi|255974579|ref|ZP_05425165.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2] gi|256956955|ref|ZP_05561126.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5] gi|256964042|ref|ZP_05568213.1| holliday junction DNA helicase RuvA [Enterococcus faecalis HIP11704] gi|257078631|ref|ZP_05572992.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1] gi|257084064|ref|ZP_05578425.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1] gi|257087893|ref|ZP_05582254.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6] gi|257418785|ref|ZP_05595779.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11] gi|294780021|ref|ZP_06745400.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1] gi|300862283|ref|ZP_07108363.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD Ef11] gi|44888456|sp|Q839T6|RUVA_ENTFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29342180|gb|AAO79946.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583] gi|255967451|gb|EET98073.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2] gi|256947451|gb|EEU64083.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5] gi|256954538|gb|EEU71170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis HIP11704] gi|256986661|gb|EEU73963.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1] gi|256992094|gb|EEU79396.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1] gi|256995923|gb|EEU83225.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6] gi|257160613|gb|EEU90573.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11] gi|294452915|gb|EFG21338.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1] gi|300848808|gb|EFK76565.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD Ef11] Length = 204 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 16 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 72 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 73 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 132 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + +A S + A A+ AL LGY Sbjct: 133 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 170 >gi|315221510|ref|ZP_07863430.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211] gi|315189344|gb|EFU23039.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211] Length = 196 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG + + Y++++V + YI++ + G++ +FV +R+D L Sbjct: 1 MYEYFKGILSKITAKYIVVEVGQIGYILHVA-NPYAYSGQVNQELQVFVHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK ++ +Q + + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVATGVAPKQVAVAATSDNQELEE-------AMEAMLALGY 164 >gi|256855044|ref|ZP_05560405.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8] gi|307291531|ref|ZP_07571408.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411] gi|256709557|gb|EEU24604.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8] gi|306497396|gb|EFM66936.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411] gi|315028754|gb|EFT40686.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4000] Length = 230 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 42 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 98 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 99 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + +A S + A A+ AL LGY Sbjct: 159 GELES-SEAAVAAMTATEALTTSNQALA-EALEALSALGY 196 >gi|146317720|ref|YP_001197432.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05ZYH33] gi|146319910|ref|YP_001199621.1| Holliday junction DNA helicase RuvA [Streptococcus suis 98HAH33] gi|253750976|ref|YP_003024117.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84] gi|253752876|ref|YP_003026016.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7] gi|253754701|ref|YP_003027841.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407] gi|166231447|sp|A4VYN2|RUVA_STRS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166231449|sp|A4VSE3|RUVA_STRSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145688526|gb|ABP89032.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus suis 05ZYH33] gi|145690716|gb|ABP91221.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus suis 98HAH33] gi|251815265|emb|CAZ50830.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84] gi|251817165|emb|CAZ54886.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407] gi|251819121|emb|CAR44199.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7] gi|292557520|gb|ADE30521.1| Holliday junction DNA helicase RuvA [Streptococcus suis GZ1] gi|319757228|gb|ADV69170.1| Holliday junction DNA helicase RuvA [Streptococcus suis JS14] Length = 196 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ QGV YI+ + G++ T++ +R+D L Sbjct: 1 MYDYIKGILTKITAKYIVVETQGVGYILQVA-NPYAYSGQVQQEVTVYTHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV +I +N + + P I K Sbjct: 60 YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGK 131 A +++ +L+GK Sbjct: 120 AQQMILDLEGK 130 >gi|327463456|gb|EGF09775.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1057] Length = 218 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK + + + + + A+ A++ LGY Sbjct: 142 AQQMVLDLEGKVVVADGPAESKVPVQTADNQELEE-------AMEAMLALGY 186 >gi|148239406|ref|YP_001224793.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. WH 7803] gi|166231452|sp|A5GKN1|RUVA_SYNPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147847945|emb|CAK23496.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. WH 7803] Length = 215 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 3/168 (1%) Query: 42 GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101 G CTL+V R D LFGF +R F L V GVG ++A+ +L ELV + Sbjct: 45 GSACTLWVHQVQRDDGSTLFGFCDQQERDLFRTLIGVNGVGPQMALALLDCCRVHELVAA 104 Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 I+ + K + Q G+ + A RI EL+ + + + + + +S V++ + + Sbjct: 105 IVDGDLKRLTQAQGVGKRTAERIAVELRDRLGNWAPLQEPSLSLVDRSDVKAIPLGEPCL 164 Query: 162 NAIS-ALVNLGYGQDQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206 + L LGY + A+ +V A+D +R +L+ +S Sbjct: 165 RDLQITLETLGYEDLEIRRAMRAVASGPDVPAEDDGDAWLRASLKWLS 212 >gi|327467941|gb|EGF13431.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK330] Length = 196 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGRLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L+GK ++ + + + A+ A++ LGY Sbjct: 120 AQQMVLDLEGKVVAADGPAESKAPIQTADNQELE-------EAMEAMLALGY 164 >gi|295112392|emb|CBL31029.1| Holliday junction DNA helicase subunit RuvA [Enterococcus sp. 7L76] Length = 218 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 30 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 86 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 87 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 146 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + +A S + A A+ AL LGY Sbjct: 147 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 184 >gi|134093539|ref|YP_001098614.1| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans] Length = 161 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 24/179 (13%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L +G+ L +R+D LFGF + +R F L + G+GAR A+ +LS Sbjct: 1 MSTFYNLPGLGEKVALLTHLTVREDAHILFGFGTAEERNVFKQLVKITGIGARTALSILS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI----SLSSVVQQDMSCVN 147 ++ +L +I LQ + + +IPGI K A R++ ELKGK + V+ D + Sbjct: 61 GMSVADLSNAITLQEAGRLTKIPGIGKKTAERLLLELKGKLGADLGAAGGVIHSDATS-- 118 Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + ++AL+ LGY +A A+ V ++D I+LAL+A+S Sbjct: 119 --------------DILNALLALGYSDKEALLAMKQV-PAGTGVSDG---IKLALKALS 159 >gi|312901232|ref|ZP_07760515.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470] gi|311291609|gb|EFQ70165.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470] Length = 230 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 42 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFCSLEEKQLFL 98 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 99 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + +A S + A A+ AL LGY Sbjct: 159 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 196 >gi|152990842|ref|YP_001356564.1| Holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2] gi|166230575|sp|A6Q3Z8|RUVA_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151422703|dbj|BAF70207.1| holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2] Length = 184 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 24/190 (12%) Query: 16 YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL 75 Y+ I+V GV Y ++ + + + K L +R+D L+GF+ +++ F L Sbjct: 16 YLHIEVGGVVYEVFISLNASAAIDK--KQIRLHTTHIIREDSESLYGFVDINEKKMFDRL 73 Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 + GVG +VA+ + S E V+ + +N ++ ++PGI K A RI+ EL IS Sbjct: 74 IKLNGVGPKVAIAICSTFKPQEFVQIVQQKNVAMLKKVPGIGPKSAQRILVELGEFDISE 133 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 S+V A AL +LG+ ++Q A+ +E D + Sbjct: 134 SNVTSSAFQ-----------------EASMALQSLGFKKEQIQKAL-----QECTATDTA 171 Query: 196 QIIRLALRAI 205 +++ AL+ I Sbjct: 172 SLVKEALKKI 181 >gi|328944741|gb|EGG38902.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1087] Length = 218 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAI 133 A +++ +L+GK + Sbjct: 142 AQQMVLDLEGKVV 154 >gi|223040201|ref|ZP_03610480.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267] gi|222878562|gb|EEF13664.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267] Length = 184 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 27/194 (13%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72 + +L GV Y + +L C K+ G L + +R+D L+GFL +++ F Sbjct: 16 NLILKTAGGVSYGVAI---SLFCSAKLERGQSVELNITQIIREDADLLYGFLDSNEQKMF 72 Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L + G+GA AM V S + + ++ ++ + +PGI K A RI+ EL Sbjct: 73 ETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAKTARRIIAELSDAK 132 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 +++ ++PS+ AI AL +LG+ +++ T A+ E + Sbjct: 133 MTMDE-----------------NLPSYQHEAILALESLGFKREKITKAL-----SECDAQ 170 Query: 193 DDSQIIRLALRAIS 206 + ++++ AL+ ++ Sbjct: 171 NTGELVKQALKKLA 184 >gi|315143243|gb|EFT87259.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2141] Length = 230 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 42 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 98 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 99 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + +A S + A A+ AL LGY Sbjct: 159 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 196 >gi|306826474|ref|ZP_07459785.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus pyogenes ATCC 10782] gi|304431333|gb|EFM34331.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus pyogenes ATCC 10782] Length = 198 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 7/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + + NK A + AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK--AGNTQLDE----AIEALLALGY 165 >gi|257417484|ref|ZP_05594478.1| holliday junction DNA helicase RuvA [Enterococcus faecalis AR01/DG] gi|257159312|gb|EEU89272.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ARO1/DG] Length = 204 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 16 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLDEKQLFL 72 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 73 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 132 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + +A S + A A+ AL LGY Sbjct: 133 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 170 >gi|327472197|gb|EGF17634.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK408] Length = 218 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 12/174 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M KG I + Y++++V + YI++ P S + ++V +R+D Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSSL---VNQETQIYVHQVVREDAE 79 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I Sbjct: 80 LLYGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGK 139 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 K A +++ +L+GK ++ S + + + A+ A++ LGY Sbjct: 140 KTAQQMVLDLEGKVVAAGSPAESKAPVQTADNQELEE-------AMEAMLALGY 186 >gi|332365447|gb|EGJ43208.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK355] Length = 218 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 1/134 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHVA-NPYAYSGYLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAIS 134 A +++ +L+GK ++ Sbjct: 142 AQQMVLDLEGKVVA 155 >gi|227555748|ref|ZP_03985795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22] gi|229550642|ref|ZP_04439367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 29200] gi|307268982|ref|ZP_07550345.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248] gi|307274076|ref|ZP_07555285.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855] gi|307284121|ref|ZP_07564291.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860] gi|307287114|ref|ZP_07567187.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109] gi|227175103|gb|EEI56075.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22] gi|229304208|gb|EEN70204.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 29200] gi|306501893|gb|EFM71183.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109] gi|306503492|gb|EFM72741.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860] gi|306509201|gb|EFM78262.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855] gi|306514651|gb|EFM83203.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248] gi|315026742|gb|EFT38674.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2137] gi|315033494|gb|EFT45426.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0017] gi|315036485|gb|EFT48417.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0027] gi|315148995|gb|EFT93011.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4244] gi|315151351|gb|EFT95367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0012] gi|315165799|gb|EFU09816.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1302] gi|315573928|gb|EFU86119.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309B] gi|315581880|gb|EFU94071.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309A] gi|327533913|gb|AEA92747.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus faecalis OG1RF] gi|329576228|gb|EGG57746.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1467] Length = 223 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 35 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 92 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + +A S + A A+ AL LGY Sbjct: 152 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 189 >gi|116333841|ref|YP_795368.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus brevis ATCC 367] gi|122269472|sp|Q03R35|RUVA_LACBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116099188|gb|ABJ64337.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus brevis ATCC 367] Length = 202 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M + G I +Y D+V++DV GV Y++ P R + T++V + Sbjct: 1 MYEYLHGLITAVYPDHVVVDVNGVGYLVNTANPYRYEVSATAV----TIYVYQAVSDTAQ 56 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF ++Q F+ L +V G+G + A+ +L+ L+ +I ++ + + PG+ Sbjct: 57 TLYGFSDFAEKQLFLKLINVNGIGPKSALAILANPDHQGLMMAIKTNDTGFLTKFPGVGK 116 Query: 119 KIASRIMTELKGKAISLSSVVQQD 142 K A +I+ +L+ K L+ + Sbjct: 117 KTAGQIVLDLQNKLDDLAPATDDN 140 >gi|227518048|ref|ZP_03948097.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104] gi|227074484|gb|EEI12447.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104] Length = 223 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 35 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLDEKQLFL 91 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 92 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + +A S + A A+ AL LGY Sbjct: 152 GELES-SEAAVAAMTATEAVTTSNQALA-EALEALSALGY 189 >gi|205374298|ref|ZP_03227097.1| Holliday junction DNA helicase motor protein [Bacillus coahuilensis m4-4] Length = 148 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 5/143 (3%) Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I L+GFL+ ++ FM L +V G+G + A+ +L + ++ +I +N + + PG+ Sbjct: 2 ISLYGFLTMEEKLLFMKLLNVTGIGPKGALAILGSGDVSGVIHAIEEENEAFLVKFPGVG 61 Query: 118 MKIASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A +++ +LKGK L VV + E+ S F AI AL LGY D+ Sbjct: 62 KKTARQMILDLKGK---LQDVVPDFFPNLFQPEKEDTLSSDHFLNEAILALKALGY-SDR 117 Query: 177 ATTAVVSVLKKEKNIADDSQIIR 199 V L+ E D I R Sbjct: 118 ELKKVEPKLRNEPGKTSDEYIKR 140 >gi|149194599|ref|ZP_01871695.1| Holliday junction DNA helicase motor protein [Caminibacter mediatlanticus TB-2] gi|149135343|gb|EDM23823.1| Holliday junction DNA helicase motor protein [Caminibacter mediatlanticus TB-2] Length = 180 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 26/182 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I + +DV+ + Y + + T + K G F ++ +++++ L Sbjct: 1 MIAALKGKIFEKDNGKIFLDVRDIIYELNVSLNTFAN-AKDGIF---YITEIIKENEYSL 56 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +++ F L + GVG +VA+ + S T E + I Q+ + ++PGI K Sbjct: 57 YGFINKNEKKLFDNLIKLNGVGPKVALAICSTFTPDEFISIISSQDINSLKKVPGIGPKS 116 Query: 121 ASRIMTELKGKAI-SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ E+ I +++ ++ Q A++AL NLG+ + Sbjct: 117 AKRILMEMGDFEIENINPIISQ---------------------AVTALENLGFKRADILK 155 Query: 180 AV 181 A+ Sbjct: 156 AI 157 >gi|323359952|ref|YP_004226348.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium testaceum StLB037] gi|323276323|dbj|BAJ76468.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium testaceum StLB037] Length = 206 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + ED ++I V GV + + + + +GD + +R+D + L Sbjct: 1 MISSLHGTAAHVAEDSLVIVVGGVGFSVAVTSQFARTV-HVGDDVHVHTNLIVREDALSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L SV GVG + A+GVLS +T ++ +++ + ++ GI K Sbjct: 60 YGFESREELTVFTQLISVTGVGPKSALGVLSSLTVPQIAQAVTDDDDAPFRRVSGIGPKT 119 Query: 121 ASRIMTELKGK 131 A I+ +L GK Sbjct: 120 AKLIVVQLAGK 130 >gi|325678965|ref|ZP_08158563.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8] gi|324109469|gb|EGC03687.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8] Length = 199 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 9/183 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MI ++G + + +++ GV Y TL KI + + T++ R++ + Sbjct: 1 MIYSVRGKLIHTDGEMAVVECGGVGYACKTTFYTLQ---KIAGESEVMLYTYLAVRENDV 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF + + + F +L +V GVG + A+ +LS + ++ ++ + K + + GI Sbjct: 58 DLFGFSTTEELRCFKMLITVSGVGPKAALSILSSNSPSQFALTVATGDHKSLTKCKGIGA 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A RI+ ELK K +++ + V+ M A++AL+ LGY + +A Sbjct: 118 KTAQRIVLELKDKIAKENTISVRGGDTVSAAPV----MGGALQEAVTALIVLGYSEGEAA 173 Query: 179 TAV 181 A+ Sbjct: 174 QAL 176 >gi|167005424|ref|ZP_02271182.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81-176] Length = 135 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 46/82 (56%) Query: 47 LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106 F+ +++D + +GFL +++ F +L V GVGA AM V S + +++ L + Sbjct: 47 FFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGD 106 Query: 107 SKVIAQIPGISMKIASRIMTEL 128 V+ ++PGI K A RI+ EL Sbjct: 107 ESVLKKVPGIGPKSAKRIIVEL 128 >gi|217032932|ref|ZP_03438407.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128] gi|298736165|ref|YP_003728691.1| Holliday junction ATP-dependent DNA helicase RuvA [Helicobacter pylori B8] gi|216945342|gb|EEC24014.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128] gi|298355355|emb|CBI66227.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pylori B8] Length = 183 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L ++G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLEVGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFESIIATKEVKKLQQVPGIGKKLADKIMVDLIG 129 >gi|88808434|ref|ZP_01123944.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 7805] gi|88787422|gb|EAR18579.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 7805] Length = 215 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 42 GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101 G CT +V R+D L+GF +R F L V GVG ++A+ +L ELV + Sbjct: 45 GTSCTFWVHQVQREDGSTLYGFCEQQERDLFRTLVGVNGVGPQMALALLDCCRVEELVAA 104 Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 I+ + K + Q G+ + A RI EL+ + + + + + +S V++ + ++ Sbjct: 105 IVDGDLKRLTQAQGVGKRTAERIAVELRDRLGAWAPLQEPSLSLVDRSDVKEIPLGETSL 164 Query: 162 NAIS-ALVNLGY 172 + L LGY Sbjct: 165 RELQITLETLGY 176 >gi|255322240|ref|ZP_05363386.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277] gi|255300613|gb|EET79884.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277] Length = 184 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 27/194 (13%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72 + +L GV Y + +L C K+ G L + +R+D L+GFL +++ F Sbjct: 16 NLILKTAGGVSYGVAI---SLFCSAKLERGQSVELNITQIIREDADLLYGFLDSNEQKMF 72 Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L + G+GA AM V S + + ++ ++ + +PGI K A RI+ EL Sbjct: 73 ETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAKTARRIIAELSDAK 132 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 +++ ++PS AI AL +LG+ +++ T A+ E + Sbjct: 133 MTMDE-----------------NLPSHQHEAILALESLGFKREKITKAL-----SECDAQ 170 Query: 193 DDSQIIRLALRAIS 206 + ++I+ AL+ ++ Sbjct: 171 NTGELIKQALKKLA 184 >gi|19746986|ref|NP_608122.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS8232] gi|24212371|sp|Q8NZ27|RUVA_STRP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|19749241|gb|AAL98621.1| putative Holliday junction DNA helicase [Streptococcus pyogenes MGAS8232] Length = 198 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 7/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINVA-NPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTKDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + + NK A + AI AL+ LGY Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK--AGNTQLDE----AIEALLALGY 165 >gi|203287496|ref|YP_002222511.1| Holliday junction DNA helicase [Borrelia recurrentis A1] gi|226698726|sp|B5RQK6|RUVA_BORRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|201084716|gb|ACH94290.1| Holliday junction DNA helicase [Borrelia recurrentis A1] Length = 196 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 49/83 (59%) Query: 52 HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 H R D ++LFGFL+ +R+ F L V G+G + A+ +LS I +I ++ +I+ Sbjct: 51 HFRDDDVKLFGFLNISEREVFENLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLIS 110 Query: 112 QIPGISMKIASRIMTELKGKAIS 134 ++ GI KIA +I +L+GK + Sbjct: 111 KVKGIGNKIAGKIFLKLRGKLVK 133 >gi|315174120|gb|EFU18137.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1346] Length = 230 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 42 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 98 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 99 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + + S + A A+ AL LGY Sbjct: 159 GELES-SEAAVAAMTATEVMTTSNQALA-EALEALSALGY 196 >gi|28378879|ref|NP_785771.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1] gi|254557084|ref|YP_003063501.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1] gi|308181078|ref|YP_003925206.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258511|sp|Q88V02|RUVA_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28271716|emb|CAD64622.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1] gi|254046011|gb|ACT62804.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1] gi|308046569|gb|ADN99112.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 203 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCT-LFVETHMRQDQIRLFGF 63 G + + YV+I+V G+ Y + P R ++G +++ + ++ + LFGF Sbjct: 7 GQVTDVTPGYVVIEVSGIGYKVLTANPYRY-----QVGPTAVKMYIHQAVSENGMSLFGF 61 Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 ++ F L V G+G + A+ +L+ L+++I +N+ + PG+ K A + Sbjct: 62 FDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKTAQQ 121 Query: 124 IMTELKGK 131 I+ +LKGK Sbjct: 122 IVLDLKGK 129 >gi|203283953|ref|YP_002221693.1| Holliday junction DNA helicase [Borrelia duttonii Ly] gi|226698725|sp|B5RLN1|RUVA_BORDL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|201083396|gb|ACH92987.1| Holliday junction DNA helicase [Borrelia duttonii Ly] Length = 196 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 49/83 (59%) Query: 52 HMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 H R D ++LFGFL+ +R+ F L V G+G + A+ +LS I +I ++ +I+ Sbjct: 51 HFRDDDVKLFGFLNISEREVFEDLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLIS 110 Query: 112 QIPGISMKIASRIMTELKGKAIS 134 ++ GI KIA +I +L+GK + Sbjct: 111 KVKGIGNKIAGKIFLKLRGKLVK 133 >gi|207092382|ref|ZP_03240169.1| Holliday junction DNA helicase motor protein [Helicobacter pylori HPKX_438_AG0C1] Length = 183 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +R+D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLEAGQKVRLKILQVIREDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|300768015|ref|ZP_07077921.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494364|gb|EFK29526.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 220 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 2/125 (1%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G + + YV+I+V G+ Y + +G +++ + ++ + LFGF Sbjct: 24 GQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPTA--VKMYIHQAVSENGMSLFGFFDA 81 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 ++ F L V G+G + A+ +L+ L+++I +N+ + PG+ K A +I+ Sbjct: 82 DEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKTAQQIVL 141 Query: 127 ELKGK 131 +LKGK Sbjct: 142 DLKGK 146 >gi|50954747|ref|YP_062035.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71649473|sp|Q6AFB5|RUVA_LEIXX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|50951229|gb|AAT88930.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 26/204 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYII-YCPIRTLSCLGKIGDFCTLFVETHM--RQDQ 57 MI ++G + +IDV GV + + P S ++GD FV T + R+D Sbjct: 1 MISSLRGTVLSASGGAAVIDVGGVGFAVQLTPDHARSL--RVGDEA--FVHTTLIVREDS 56 Query: 58 IRLFGFLSDLDR-QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 ++LFGF S L++ Q F LL V GVG + A+ VLS ++ ++ +++ + + GI Sbjct: 57 LQLFGF-SGLEQLQVFELLNGVSGVGPKSAISVLSVLSPDQVADAVAAADDAPFRAVSGI 115 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-----ALVNLG 171 K A I+ L GK ++ + A PS A +++S ALV LG Sbjct: 116 GPKTAKLIVVSLTGK-----------LAACRRPSAPSARRPS-APSSVSDSVLVALVGLG 163 Query: 172 YGQDQATTAVVSVLKKEKNIADDS 195 + + A AV V+ DS Sbjct: 164 WPEKVAGEAVAEVIAGTAESERDS 187 >gi|312969902|ref|ZP_07784085.1| ruvA N terminal domain protein [Escherichia coli 1827-70] gi|310338187|gb|EFQ03276.1| ruvA N terminal domain protein [Escherichia coli 1827-70] Length = 107 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 55/103 (53%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 +LI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 1 MLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 60 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 103 >gi|169350138|ref|ZP_02867076.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552] gi|169292921|gb|EDS75054.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552] Length = 186 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 D+++++ G+ Y+IY GK +++ ++++D + L+GF + +++ F+ Sbjct: 15 DHIVVENNGIGYLIYVSNPYEFTKGK---EIKVYLYQYVKEDVLLLYGFKTIEEKEMFLK 71 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L V+G+G + A+G+L+ ++ +I + + +IPGI K A +I+ +L+GK Sbjct: 72 LILVKGIGCKTAIGILATGDLERIISAIETNDVNYLKKIPGIGPKAAKQIILDLQGK 128 >gi|303233139|ref|ZP_07319812.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4] gi|302480724|gb|EFL43811.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4] Length = 208 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 7/132 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI----GDFCTLFVETHMRQD 56 MI ++ G + L +V+IDV GV Y + + SC + G L ++++ Sbjct: 1 MIVQLSGTLVELTSSHVIIDVAGVGYELGI---SASCAAHLPAEKGSPLVLLTRMIVKEN 57 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L+GF +R F + S+ GVG ++A+ +LS T ++L+ Q+ ++Q+ G+ Sbjct: 58 ALELYGFADAYERLMFDTIISISGVGPKLALAILSLYTPSQLLTIAQTQDVAAMSQVSGV 117 Query: 117 SMKIASRIMTEL 128 K A R++ EL Sbjct: 118 GKKKAQRLLLEL 129 >gi|260435378|ref|ZP_05789348.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109] gi|260413252|gb|EEX06548.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109] Length = 222 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 9/167 (5%) Query: 6 KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLS 65 +GN G VL+ GV Y ++ R L GD L++ R+D L+GF Sbjct: 23 QGNRSG-----VLLLCGGVGYEVHLTERHQQNLPADGDL-NLWIHQVQREDGSSLYGFPL 76 Query: 66 DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +R F LL SV GVG + + ++ ELVE+I + + + + GI + A R+ Sbjct: 77 RQERDLFRLLISVSGVGPQAGLALMQECKPQELVEAISSGDLRRLCKAQGIGKRTAERLA 136 Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 EL+ + + V D + E MP+ + + L LGY Sbjct: 137 VELRASIAAFAGV---DPAPSLAEGVSSEQMPASGADVEATLSMLGY 180 >gi|256618467|ref|ZP_05475313.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 4200] gi|256761914|ref|ZP_05502494.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3] gi|256960754|ref|ZP_05564925.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96] gi|257081405|ref|ZP_05575766.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol] gi|257088548|ref|ZP_05582909.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188] gi|256597994|gb|EEU17170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 4200] gi|256683165|gb|EEU22860.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3] gi|256951250|gb|EEU67882.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96] gi|256989435|gb|EEU76737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol] gi|256997360|gb|EEU83880.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188] Length = 204 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 16 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 72 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 73 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 132 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + + S + A A+ AL LGY Sbjct: 133 GELES-SEAAVAAMTATEVVTTSNQALA-EALEALSALGY 170 >gi|109947771|ref|YP_664999.1| Holliday junction DNA helicase RuvA [Helicobacter acinonychis str. Sheeba] gi|123066165|sp|Q17WH6|RUVA_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|109714992|emb|CAK00000.1| holliday junction DNA helicase [Helicobacter acinonychis str. Sheeba] Length = 183 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRTASML-QTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|261839678|gb|ACX99443.1| Holliday junction DNA helicase motor protein [Helicobacter pylori 52] Length = 183 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 52/95 (54%) Query: 36 SCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITA 95 S L ++G L + +++D L+GFL + ++ F L + GVG R+A+ +LS + Sbjct: 35 SALLQMGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSP 94 Query: 96 TELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 E I + K + Q+PGI K+A +IM +L G Sbjct: 95 NEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|254779490|ref|YP_003057595.1| Holliday junction DNA helicase RuvA [Helicobacter pylori B38] gi|254001401|emb|CAX29394.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pylori B38] Length = 183 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT + L ++G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRTAALL-QVGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|312903815|ref|ZP_07762987.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635] gi|310632759|gb|EFQ16042.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635] gi|315160794|gb|EFU04811.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0645] gi|315168284|gb|EFU12301.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1341] gi|315579775|gb|EFU91966.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0630] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 42 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 98 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 99 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 158 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + + S + A A+ AL LGY Sbjct: 159 GELES-SEAAVAAMTATEVVTTSNQALA-EALEALSALGY 196 >gi|317011094|gb|ADU84841.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SouthAfrica7] Length = 183 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKKLQQVPGIGKKLADKIMVDLIG 129 >gi|307276309|ref|ZP_07557435.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134] gi|312908743|ref|ZP_07767683.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 512] gi|312979206|ref|ZP_07790910.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 516] gi|306506974|gb|EFM76118.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134] gi|310625342|gb|EFQ08625.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 512] gi|311287971|gb|EFQ66527.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 516] gi|315171308|gb|EFU15325.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1342] Length = 223 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 35 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 92 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + + S + A A+ AL LGY Sbjct: 152 GELES-SEAAVAAMTATEVVTTSNQALA-EALEALSALGY 189 >gi|325106603|ref|YP_004267671.1| Holliday junction DNA helicase subunit RuvA [Planctomyces brasiliensis DSM 5305] gi|324966871|gb|ADY57649.1| Holliday junction DNA helicase subunit RuvA [Planctomyces brasiliensis DSM 5305] Length = 208 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 15/199 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQ-- 57 MI I+G + L E +++ ++ P L GKIG+ L ++ + Sbjct: 1 MISSIRGELLALEETSAFLNIGAFTIEVFIPDFVRRQLQGKIGEPIELRTMAYLDGNPQK 60 Query: 58 -----IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 RL GF S + +F L+ SV G+G + A+ + R E+ +I Q++K ++ Sbjct: 61 GGRMTPRLVGFTSKAELAFFELICSVDGLGIKKALAAIVR-PVREVAAAIEQQDTKTLST 119 Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 +PGI +A RI+ +L+ K + +V Q + S AL+ LG+ Sbjct: 120 LPGIGPAVAERIVAKLRRKMTRFALMVDQASGEAYEPMNDQVS------ETYEALLALGH 173 Query: 173 GQDQATTAVVSVLKKEKNI 191 D A + + LK K Sbjct: 174 SADDAHNKIDTALKSGKKF 192 >gi|268679680|ref|YP_003304111.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum DSM 6946] gi|268617711|gb|ACZ12076.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum DSM 6946] Length = 186 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 70/132 (53%), Gaps = 4/132 (3%) Query: 23 GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82 G+ Y ++ + + S ++ + +L V +R+DQ L+GF+ + +++ F L + G+G Sbjct: 24 GLSYKVFISLFS-SARIQLNEKISLHVSQIIREDQHSLYGFVDENEKKVFDTLVKLNGIG 82 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD 142 A+ V S ++ + +++ QN ++PGI K A RI+ EL ++ L + +D Sbjct: 83 PSTALAVCSTLSPDDFAHALVSQNISAFQKVPGIGPKSAKRILVELSDFSLQL---LHED 139 Query: 143 MSCVNKEQAHIC 154 + + ++A + Sbjct: 140 FTNSSLQEASMA 151 >gi|195978973|ref|YP_002124217.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|229560129|sp|B4U0J5|RUVA_STREM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|195975678|gb|ACG63204.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 198 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 11/174 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG + + Y++++ G+ Y+I P C+ + T+++ +R+D Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMITVANPYSFTDCVNQQ---VTIYLHQVIREDAQ 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF S+ ++ F+ L SV G+G A+ +++ LV +I + + + P I Sbjct: 58 LLFGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGK 117 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 K A +++ +L GK + + ++ AI AL+ LGY Sbjct: 118 KTAQQMVLDLAGKFVEAPKEESSKLPKAKHQENEQLD------EAIEALLALGY 165 >gi|322386544|ref|ZP_08060171.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus cristatus ATCC 51100] gi|321269463|gb|EFX52396.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus cristatus ATCC 51100] Length = 204 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M KG I + Y++++V + YI++ P S + ++V +R+D Sbjct: 9 MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSSL---VNQETQIYVHQVVREDAQ 65 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I Sbjct: 66 LLYGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGK 125 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 K A +++ +L+GK VV D +K A+ A++ LGY Sbjct: 126 KTAQQMVLDLEGK------VVAADGPAESKAPVQTVDNQELE-EAMEAMLALGY 172 >gi|225869418|ref|YP_002745366.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus] gi|259495656|sp|C0MGC2|RUVA_STRS7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225702694|emb|CAX00805.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus] Length = 198 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG + + Y++++ G+ Y+I P C+ + T+++ +R+D Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMITVANPYSFTDCVNQQ---VTIYLHQVIREDAQ 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF S+ ++ F+ L SV G+G A+ +++ LV +I + K + + P I Sbjct: 58 LLFGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDIKYLMRFPKIGK 117 Query: 119 KIASRIMTELKGKAIS 134 K A +++ +L GK + Sbjct: 118 KTAQQMVLDLAGKFVE 133 >gi|124023288|ref|YP_001017595.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9303] gi|123963574|gb|ABM78330.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MIGKIKG-NIEGLYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G +E + V++ GV Y + R LS + + L++ R D Sbjct: 9 MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 68 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F L V GVG ++A+ +L ELVE+I+ + + + Q G+ Sbjct: 69 GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 128 Query: 117 SMKIASRIMTELKGKAISLS 136 + A R+ EL+ K S Sbjct: 129 GKRTAERLAVELRTKLAEFS 148 >gi|315586830|gb|ADU41211.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter pylori 35A] Length = 183 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|108563288|ref|YP_627604.1| Holliday junction DNA helicase RuvA [Helicobacter pylori HPAG1] gi|123073768|sp|Q1CSZ2|RUVA_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|107837061|gb|ABF84930.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1] Length = 183 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLETGQKVRLKILQVIKEDANLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|308063716|gb|ADO05603.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Sat464] Length = 183 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|297380083|gb|ADI34970.1| Holliday junction DNA helicase RuvA [Helicobacter pylori v225d] Length = 183 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 + E I + K + Q+PGI K+A +IM +L G +Q + S V E Sbjct: 91 SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG------FFIQDETSPVRNE 142 >gi|33862917|ref|NP_894477.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9313] gi|44888415|sp|Q7V7T9|RUVA_PROMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33634833|emb|CAE20819.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9313] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MIGKIKG-NIEGLYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G +E + V++ GV Y + R LS + + L++ R D Sbjct: 1 MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F L V GVG ++A+ +L ELVE+I+ + + + Q G+ Sbjct: 61 GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 120 Query: 117 SMKIASRIMTELKGKAISLS 136 + A R+ EL+ K S Sbjct: 121 GKRTAERLAVELRTKLAEFS 140 >gi|317180262|dbj|BAJ58048.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F32] Length = 183 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|255971607|ref|ZP_05422193.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1] gi|257421400|ref|ZP_05598390.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98] gi|255962625|gb|EET95101.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1] gi|257163224|gb|EEU93184.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98] gi|323479298|gb|ADX78737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis 62] Length = 204 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 16 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 72 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 73 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 132 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + + S + A A+ AL LGY Sbjct: 133 GELES-SEAAVAAMTVTEVVTTSNQALA-EALEALSALGY 170 >gi|217034714|ref|ZP_03440116.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10] gi|216942827|gb|EEC22324.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10] Length = 183 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKTRLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 + E I + K + Q+PGI K+A +IM +L G +Q + S V E Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG------FFIQDETSPVRNE 142 >gi|210135073|ref|YP_002301512.1| Holliday junction DNA helicase RuvA [Helicobacter pylori P12] gi|210133041|gb|ACJ08032.1| holliday junction DNA helicase [Helicobacter pylori P12] Length = 183 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|171778535|ref|ZP_02919662.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282758|gb|EDT48182.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 197 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 14/175 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+V G+ YI+ S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVIEVGGLGYIVNVA-NPYSFSDLMNQDIQVYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + +S V Q + N++ A+ AL+ LGY Sbjct: 120 AQQMVLDLAGKFVDVSVENGKVSQTKAAANEQLEE----------AMEALLALGY 164 >gi|332638256|ref|ZP_08417119.1| Holliday junction DNA helicase RuvA [Weissella cibaria KACC 11862] Length = 199 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 71/133 (53%), Gaps = 7/133 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M + G I + +Y++++V G+ Y ++ P + + ++VE +R+++ Sbjct: 1 MYEYLNGVITEVAPNYIVVEVGGIGYRVLVANPYAF-----PMNELERVYVEQIIRENEQ 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFL+ ++ F L +V G+G + A+ +L+ T LV++I + + + PGI Sbjct: 56 SLYGFLTADEKLLFQKLLNVSGIGPKSALAILANADHTGLVQAIADNDITFLTKFPGIGK 115 Query: 119 KIASRIMTELKGK 131 K A +I+ +L+ K Sbjct: 116 KTAQQIVLDLQNK 128 >gi|188527709|ref|YP_001910396.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Shi470] gi|229560035|sp|B2UU34|RUVA_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188143949|gb|ACD48366.1| Holliday junction DNA helicase motor protein [Helicobacter pylori Shi470] gi|308062206|gb|ADO04094.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Cuz20] Length = 183 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|317012687|gb|ADU83295.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Lithuania75] Length = 183 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|317177676|dbj|BAJ55465.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F16] Length = 183 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKVRLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|301168494|emb|CBW28084.1| holliday junction DNA helicase ruvA [Bacteriovorax marinus SJ] Length = 216 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 74/134 (55%), Gaps = 10/134 (7%) Query: 1 MIGKIKGNIEGLYED---YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 MIG ++G + ++ D V++ G+ Y +Y ++ + G ++F+ +++ Sbjct: 1 MIGHLQGEV--IFSDGVEAVVLTNSGIGYQVY-----INQVLPEGKSASIFISHVIKEAS 53 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + +++ F LL SV+GVG + A ++ + +++ SI+ + K + + PGI Sbjct: 54 EELYGFKTIREKKLFELLTSVKGVGPKSAFSLVGALGVDQIINSILFDDKKSLTKAPGIG 113 Query: 118 MKIASRIMTELKGK 131 K A++++ +L+ K Sbjct: 114 NKAAAQMILDLQNK 127 >gi|330836553|ref|YP_004411194.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta coccoides DSM 17374] gi|329748456|gb|AEC01812.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta coccoides DSM 17374] Length = 209 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 9/137 (6%) Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+D + LFGFLS+ +R F LQ+V G+GA+ A+ +L ++ L+ ++ + K +++I Sbjct: 58 REDAMVLFGFLSEQERIVFEQLQTVPGIGAKQAVKILGGMSLVTLLTALDQGDVKTLSRI 117 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ K A R++ L+G ++V +D + K A S + AL +GY Sbjct: 118 PGVGSKTAQRLILALRG------TLVLEDDATPGK--APSPSATGRWTDLSEALQEMGYD 169 Query: 174 QDQATTAVVSVLKKEKN 190 + + +++ L+KE Sbjct: 170 RKK-VMEILARLEKEHE 185 >gi|15611882|ref|NP_223533.1| Holliday junction DNA helicase RuvA [Helicobacter pylori J99] gi|6685958|sp|Q9ZKW9|RUVA_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|4155386|gb|AAD06396.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobacter pylori J99] Length = 183 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT + L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRTAALL-QTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|308183035|ref|YP_003927162.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4] gi|308065220|gb|ADO07112.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4] Length = 183 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 53 MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 +++D L+GFL + ++ F L + GVG R+A+ +LS + E I + K + Q Sbjct: 52 IKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQ 111 Query: 113 IPGISMKIASRIMTELKG 130 +PGI K+A +IM +L G Sbjct: 112 VPGIGKKLADKIMVDLIG 129 >gi|229547070|ref|ZP_04435795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322] gi|312952497|ref|ZP_07771365.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102] gi|229307799|gb|EEN73786.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322] gi|310629593|gb|EFQ12876.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102] gi|315153490|gb|EFT97506.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0031] gi|315155061|gb|EFT99077.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0043] gi|315158504|gb|EFU02521.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0312] Length = 223 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 35 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 92 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 L S + ++ + + S + A A+ AL LGY Sbjct: 152 GELES-SEAAVAAMTVTEVVTTSNQALA-EALEALSALGY 189 >gi|312880160|ref|ZP_07739960.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM 12260] gi|310783451|gb|EFQ23849.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM 12260] Length = 198 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + + IDV G ++ RT+ + G L + + L Sbjct: 1 MIRSLSGVVESARDGALWIDVNGFGLEVFAS-RTVLEQAEEGHPLRLLAQLILTDSGPSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L V+ +G R+AM +L + ELV +I Q+ + + PG+ K Sbjct: 60 YGFGGEEERRLFQELIQVKNIGGRMAMALLRVFSVAELVAAIRAQDVASLGRAPGVGAKR 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+ K L + + +A + S+ AL LG+ + A +A Sbjct: 120 AERICFELRPKLDRLFGTAAGETGPL---EAGVESL-------ADALEGLGFSRSTARSA 169 Query: 181 VVSV---LKKEKNIADD 194 + L+ E+ +D Sbjct: 170 LEEARRSLEGEEPAEED 186 >gi|116493020|ref|YP_804755.1| Holliday junction DNA helicase subunit RuvA [Pediococcus pentosaceus ATCC 25745] gi|122265516|sp|Q03EQ9|RUVA_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116103170|gb|ABJ68313.1| Holliday junction DNA helicase subunit RuvA [Pediococcus pentosaceus ATCC 25745] Length = 195 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 19/165 (11%) Query: 16 YVLIDVQGVCYIIYC--PIR-TLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72 Y+++DV GV +++ P L K+ FV + ++ L+GF D++ F Sbjct: 16 YIVVDVNGVGFLVNVANPYSFELDAKQKV------FVHQAVSENDQTLYGFKKAEDKELF 69 Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 + L V+G+G + A+ +L+ T L+ +I + + + P I K A +I+ +LKGK Sbjct: 70 LNLLKVKGIGPKSALAILANDDHTGLINAINNDDVSYLKKFPKIGPKAAQQIILDLKGKV 129 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQ 176 V+ ++ + + + + A++ A+ AL+ LGY + + Sbjct: 130 -----AVENEVGTL----FDLSTTSNQALDEALEALIALGYSEKE 165 >gi|306821186|ref|ZP_07454801.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550772|gb|EFM38748.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 201 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 104/210 (49%), Gaps = 22/210 (10%) Query: 1 MIGKIKGNI--EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 MI I G + +GL ++V+++ + Y + T L ++ T++ +++D + Sbjct: 1 MIDYISGTVVQKGL--NHVVVECNNIGYKLLVSQNTSYEL-ELEKISTVYTHLIVKEDDL 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L GF + +R F +L SV +GA++A+ +LS TAT++ I + + ++ G+ Sbjct: 58 SLIGFSNMSERDMFRILISVSKIGAKIALSILSTYTATQIATFIKSADVVSLGKVSGLGK 117 Query: 119 KIASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 K A R++ ELK K + ++ + + D+ +++ + + I AL LG+ Sbjct: 118 KTAERLVLELKDKVDIFVGSEEIAKIRKDDIPQEDEKMSQV----------IEALTMLGF 167 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLAL 202 +A ++ V +K+ AD +I+ +L Sbjct: 168 SNKEAVSSAEKVYALDKD-ADVQSLIKSSL 196 >gi|308184664|ref|YP_003928797.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180] gi|308060584|gb|ADO02480.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180] Length = 183 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 53 MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 +++D L+GFL + ++ F L + GVG R+A+ +LS + E I + K + Q Sbjct: 52 IKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQ 111 Query: 113 IPGISMKIASRIMTELKG 130 +PGI K+A +IM +L G Sbjct: 112 VPGIGKKLADKIMVDLIG 129 >gi|322378554|ref|ZP_08053000.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS1] gi|322380312|ref|ZP_08054527.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS5] gi|321147264|gb|EFX41949.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS5] gi|321149016|gb|EFX43470.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS1] Length = 183 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 18/168 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQI 58 MI ++G I + ++ +++ GV Y ++ +R + +F+ T +++D Sbjct: 1 MIVGLRGIILQVLPTFIELEINGVVYGVH--VRAGENFESKQE---VFLHTAQIIKEDGH 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFL +++ F L V GVG RVA+ +LS + + I ++ K + ++PG+ Sbjct: 56 SLYGFLQRTEKELFERLLKVNGVGPRVALAILSTYSCADFSVCIQSKDLKALQRVPGVGA 115 Query: 119 KIASRIM-----------TELKGKAISLSSVVQQDMSCVNKEQAHICS 155 K+A +IM TE+K AI + + Q + E ICS Sbjct: 116 KLAGKIMLDLAGLVLQEETEIKDTAIEQAVLGLQSLGFKTTEAFKICS 163 >gi|332673720|gb|AEE70537.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter pylori 83] Length = 183 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKVRLKILQVIKEDVHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|261838266|gb|ACX98032.1| Holliday junction DNA helicase [Helicobacter pylori 51] Length = 183 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKARLKILQVIKEDVHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|148927930|ref|ZP_01811336.1| Holliday junction DNA helicase RuvA [candidate division TM7 genomosp. GTL1] gi|147886719|gb|EDK72283.1| Holliday junction DNA helicase RuvA [candidate division TM7 genomosp. GTL1] Length = 187 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D ++IDV GV Y + L + + L+ H+R+ L Sbjct: 1 MIAHVVGRLTEKFIDSIIIDVNGVGYEVLVTALEYEELA-LQEEVKLYTYHHVREQVEEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL-QNSKVIAQIPGISMK 119 +GF S ++ F LL +VQG+G + A+ +LS + E+V S I +S I + G+ + Sbjct: 60 YGFSSLAGKRLFELLITVQGIGPKAALAILS-LGDPEVVRSAIASSDSGFIQRASGVGKR 118 Query: 120 IASRIMTELKGK 131 A R++ +L K Sbjct: 119 TADRVVVDLADK 130 >gi|317014289|gb|ADU81725.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Gambia94/24] Length = 183 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT + L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRTAALL-QAGQKARLKILQVIKEDANLLYGFLEEGEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|208434791|ref|YP_002266457.1| Holliday junction DNA helicase [Helicobacter pylori G27] gi|226698733|sp|B5Z7P2|RUVA_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|208432720|gb|ACI27591.1| Holliday junction DNA helicase [Helicobacter pylori G27] Length = 183 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 53 MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 +++D L+GFL + ++ F L + GVG R+A+ +LS + E I + K + Q Sbjct: 52 IKEDAHLLYGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQ 111 Query: 113 IPGISMKIASRIMTELKG 130 +PGI K+A +IM +L G Sbjct: 112 VPGIGKKLADKIMVDLIG 129 >gi|312863970|ref|ZP_07724207.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis F0396] gi|311100536|gb|EFQ58742.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis F0396] Length = 196 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YII S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK L + + + E H A+ AL+ LGY Sbjct: 120 AQQMVLDLAGKFAELPTETTK-TTPSQPEGNHQLD------EAMEALLALGY 164 >gi|306834544|ref|ZP_07467657.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus bovis ATCC 700338] gi|304423346|gb|EFM26499.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus bovis ATCC 700338] Length = 197 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 10/173 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YI+ S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVIEAGGLGYIVNVA-NPYSFSDLVNQEVQIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGY 172 A +++ +L GK + D+S N + + + + + A+ AL+ LGY Sbjct: 120 AQQMVLDLAGKFV--------DVSVENGKASQTKTATNEQLEEAMEALLALGY 164 >gi|15674189|ref|NP_268364.1| Holliday junction DNA helicase motor protein [Lactococcus lactis subsp. lactis Il1403] gi|281492890|ref|YP_003354870.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp. lactis KF147] gi|13878764|sp|Q9CDL2|RUVA_LACLA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|12725272|gb|AAK06305.1|AE006449_11 DNA helicase RuvA [Lactococcus lactis subsp. lactis Il1403] gi|281376542|gb|ADA66028.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp. lactis KF147] Length = 197 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 22/193 (11%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 ++IDV G+ Y+I + + ++V +R+D L+GF+++ ++ F+ L Sbjct: 17 IVIDVAGIGYLISVA-NPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLI 75 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 SV G+G + A+ +++ L+ +I + K + + PG+ K A +++ +L GK + Sbjct: 76 SVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATG 135 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK-EKNIADDS 195 +V +S ++ A ++ AI AL LGY +AT LKK EK +A ++ Sbjct: 136 TV---GISLLDAGPAGNLALEE----AIEALQALGY---KATE-----LKKIEKKLAQET 180 Query: 196 -----QIIRLALR 203 + I+ AL+ Sbjct: 181 GLTSEEYIKSALK 193 >gi|15645501|ref|NP_207676.1| Holliday junction DNA helicase RuvA [Helicobacter pylori 26695] gi|3122834|sp|O25549|RUVA_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2314020|gb|AAD07932.1| Holliday junction DNA helicase (ruvA) [Helicobacter pylori 26695] Length = 183 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT + L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRTAALL-EAGQKARLKILQVIKEDAHLLYGFLEEGEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|317182188|dbj|BAJ59972.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F57] Length = 183 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRT-SALLQAGQKVRLKILQVIKEDVHLLYGFLEESEKILFERLLKINGVGGRIALAILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|322517658|ref|ZP_08070523.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus vestibularis ATCC 49124] gi|322123735|gb|EFX95320.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus vestibularis ATCC 49124] Length = 196 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YII S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK L + + + E H A+ AL+ LGY Sbjct: 120 AQQMVLDLAGKFAELPTETTK-TTPSQPEGNHQLD------EAMEALLALGY 164 >gi|282855630|ref|ZP_06264944.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter piscolens W5455] gi|282586560|gb|EFB91814.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter piscolens W5455] Length = 203 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 5/146 (3%) Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I L+GF D +R+ F L+ +GVG + A+ +L ++ E+V ++ + +++ +PGI Sbjct: 57 IVLYGFADDTERRTFKLMILTKGVGGKAAISILQYLSPAEIVAAVEQNDIRLLTSVPGIG 116 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A RI EL + I +Q + A + + AL +LG+ + A Sbjct: 117 KKTAERICFELSDR-IHKKGFIQ----LTGEFHGAPAGDRQAAASVLDALESLGFDRASA 171 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 A SV+ ++ +S+ I LR Sbjct: 172 VRAYKSVVAEQGEALGESETIMSCLR 197 >gi|257459533|ref|ZP_05624642.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268] gi|257442958|gb|EEV18092.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268] Length = 184 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 5/110 (4%) Query: 21 VQGVCYIIYCPIRTLSCL--GKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 GV Y + + T + L GK+ + + + +R+D L+GFL + +++ F L + Sbjct: 22 ASGVSYALSLSLNTSAKLTQGKLTELACVQI---LREDADLLYGFLDESEKKMFETLIKL 78 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 GVGA AM V S + + + ++ + +PGI K A RI+ EL Sbjct: 79 SGVGASTAMAVCSTLAPQDFARCVATGDAATLTSVPGIGPKTARRIIAEL 128 >gi|307637571|gb|ADN80021.1| Holliday junction DNA helicase [Helicobacter pylori 908] gi|325996162|gb|ADZ51567.1| Holliday junction DNA helicase [Helicobacter pylori 2018] gi|325997758|gb|ADZ49966.1| Holliday junction DNA helicase [Helicobacter pylori 2017] Length = 183 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +RT + L + G L + +++D L+GFL + ++ F L + GVG R+A+ +LS Sbjct: 32 MRTAALL-QAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALTILS 90 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E I + K + Q+PGI K+A +IM +L G Sbjct: 91 SFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 129 >gi|229824009|ref|ZP_04450078.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271] gi|229786363|gb|EEP22477.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271] Length = 197 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 14/170 (8%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62 I+G + + +++I GV Y + C P R G++ VE +R+D + L+G Sbjct: 7 IQGELVQIQPLHLVISANGVGYRLLCANPYR---WQGELHQQVLCPVELVVREDAMTLYG 63 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 F ++Q F L V G+G + A+ +L+ L+++I +S + + PG+ K A Sbjct: 64 FRDQQEKQLFNTLLKVSGIGPKSALSILALDDHVGLIQAIDSGDSTYLTKFPGVGKKTAQ 123 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 +++ +L G + + Q S +Q H+ A+ AL LGY Sbjct: 124 QMILDLSGN-LDFQAHAQTQASAPVSQQ-HLE-------EALEALAGLGY 164 >gi|254821998|ref|ZP_05226999.1| Holliday junction DNA helicase RuvA [Mycobacterium intracellulare ATCC 13950] Length = 105 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIAAVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 +GF R F+ L SV GVG R+AM L+ Sbjct: 60 YGFTDTDTRDLFLTLLSVSGVGPRLAMATLA 90 >gi|293389007|ref|ZP_06633490.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] gi|291081647|gb|EFE18610.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] Length = 163 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 6/125 (4%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 35 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 92 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151 Query: 133 ISLSS 137 L S Sbjct: 152 GELES 156 >gi|293384502|ref|ZP_06630374.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] gi|291078181|gb|EFE15545.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] Length = 163 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 6/125 (4%) Query: 16 YVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 Y++++ G+ Y I P R GK+ L++ +R+D LFGF S ++Q F+ Sbjct: 35 YIVVETNGIGYQISVDNPYR---YSGKMDTDIKLYLHQVVREDAQLLFGFGSLEEKQLFL 91 Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + + +++ + L+ +I ++ + + PG+ K A +++ +LKGK Sbjct: 92 KLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKTAQQMILDLKGKL 151 Query: 133 ISLSS 137 L S Sbjct: 152 GELES 156 >gi|326407801|gb|ADZ64872.1| holliday junction DNA helicase RuvA [Lactococcus lactis subsp. lactis CV56] Length = 197 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 22/193 (11%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 ++IDV G+ Y+I + + ++V +R+D L+GF+++ ++ F+ L Sbjct: 17 IVIDVAGIGYLISVA-NPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLI 75 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 SV G+G + A+ +++ L+ +I + K + + PG+ K A +++ +L GK + Sbjct: 76 SVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAIQMVLDLAGKFDATG 135 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK-EKNIADDS 195 +V +S ++ A ++ AI AL LGY +AT LKK EK +A ++ Sbjct: 136 TV---GISLLDAGPAGNLALEE----AIEALQALGY---KATE-----LKKIEKKLAQET 180 Query: 196 -----QIIRLALR 203 + I+ AL+ Sbjct: 181 GLTSEEYIKSALK 193 >gi|125625244|ref|YP_001033727.1| Holliday junction DNA helicase motor protein [Lactococcus lactis subsp. cremoris MG1363] gi|166230561|sp|A2RP07|RUVA_LACLM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|124494052|emb|CAL99052.1| holliday junction DNA helicase ruvA [Lactococcus lactis subsp. cremoris MG1363] gi|300072054|gb|ADJ61454.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp. cremoris NZ9000] Length = 197 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 22/193 (11%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 ++ID+ G+ Y+I + + ++V +R+D L+GF+++ ++ F+ L Sbjct: 17 IVIDLSGIGYLISVA-NPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNESEKALFLRLI 75 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 SV G+G + A+ +++ L+ +I + K + + PG+ K A +++ +L GK + Sbjct: 76 SVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATG 135 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK-EKNIADDS 195 +V +S ++ A ++ AI AL LGY +AT LKK EK +A ++ Sbjct: 136 AV---GISLLDAAPASNLALEE----AIEALQALGY---KATE-----LKKIEKKLAQEA 180 Query: 196 -----QIIRLALR 203 + I+ AL+ Sbjct: 181 GLTSEEYIKSALK 193 >gi|288906381|ref|YP_003431603.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34] gi|306832428|ref|ZP_07465581.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979395|ref|YP_004289111.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733107|emb|CBI14688.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34] gi|304425468|gb|EFM28587.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179323|emb|CBZ49367.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 197 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 83/173 (47%), Gaps = 10/173 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YI+ S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVVEAGGLGYIVNVA-NPYSFSDLVNQEVQIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGY 172 A +++ +L GK + D+S N + + + + + A+ AL+ LGY Sbjct: 120 AQQMVLDLAGKFV--------DVSVENGKASQTKTATNEQLEEAMEALLALGY 164 >gi|293375246|ref|ZP_06621530.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909] gi|325840674|ref|ZP_08167125.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1] gi|292646144|gb|EFF64170.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909] gi|325490238|gb|EGC92572.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1] Length = 195 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 23/200 (11%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRLFGF 63 +KG + +D+V+I+V G+ Y +Y T + D T +F + ++ + L+GF Sbjct: 14 LKGTVAYSAKDFVVIEVAGIGYKVY----TANPYEFRKDEATQVFTHQVVSENDLSLYGF 69 Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 + + F+ L S +G+G + A +L+ + L +I ++K + + P I K A + Sbjct: 70 KTLEEHDLFINLISARGIGPKTACAILAMKDMSGLRHAIENGDAKYLCKFPKIGPKTAQQ 129 Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183 I+ +LKGK + + + VN + A+ AL LGYG D+ T V + Sbjct: 130 IILDLKGKLVVPDAAI-----FVNNSLSE----------ALEALQALGYG-DKELTKVKN 173 Query: 184 VLKKEKNIADDSQIIRLALR 203 K D +II+ L+ Sbjct: 174 AFKDTDASVD--EIIKKGLQ 191 >gi|228476722|ref|ZP_04061391.1| holliday junction DNA helicase RuvA [Streptococcus salivarius SK126] gi|228251671|gb|EEK10768.1| holliday junction DNA helicase RuvA [Streptococcus salivarius SK126] Length = 196 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK L + + + E H A+ AL+ LGY Sbjct: 120 AQQMVLDLAGKFAELPTETTK-TTPSQPEGNHQLD------EAMEALLALGY 164 >gi|116513152|ref|YP_812059.1| Holliday junction DNA helicase motor protein [Lactococcus lactis subsp. cremoris SK11] gi|123025083|sp|Q02VS6|RUVA_LACLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116108806|gb|ABJ73946.1| Holliday junction DNA helicase subunit RuvA [Lactococcus lactis subsp. cremoris SK11] Length = 197 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 ++ID+ G+ Y+I + + ++V +R+D L+GF+++ ++ F+ L Sbjct: 17 IVIDLSGIGYLISVA-NPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNESEKALFLRLI 75 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 SV G+G + A+ +++ L+ +I + K + + PG+ K A +++ +L GK + Sbjct: 76 SVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATG 135 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 +V +S ++ A ++ AI AL LGY Sbjct: 136 AV---GISLLDAAPAGNLALEE----AIEALQALGY 164 >gi|225871416|ref|YP_002747363.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi 4047] gi|254767388|sp|C0MAS2|RUVA_STRE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225700820|emb|CAW95524.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi 4047] Length = 198 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M IKG + + Y++++ G+ Y+I P C+ + T+++ +R+D Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMITVANPYSFTDCVNQQ---VTIYLHQVIREDAQ 57 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 LFGF S+ ++ F+ L SV G+G A+ +++ LV +I + + + P I Sbjct: 58 LLFGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGK 117 Query: 119 KIASRIMTELKGKAIS 134 K A +++ +L GK + Sbjct: 118 KTAQQMVLDLAGKFVE 133 >gi|320102187|ref|YP_004177778.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644] gi|319749469|gb|ADV61229.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 14/148 (9%) Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 RL GFLS ++R++F + SV GVG R A+ + + +L +I Q+ +A PG+ Sbjct: 66 RLIGFLSPVEREFFEVFCSVDGVGVRKALRAICQ-PVKDLARTIQDQDVATLATFPGVGE 124 Query: 119 KIASRIMTELKGK------AISLSSVVQQDMSCVNKEQAHICSM----PSFAINAISALV 168 +A RI+ +L+ K A+ V + + E A S P + +AL+ Sbjct: 125 ALAERIVAKLRRKVGKFALALGDPRVPASRFTASDLEDAPHSSSNATDPEIVRDVYAALL 184 Query: 169 NLGYGQDQATTAVVSVLKKEK---NIAD 193 ++G+ + QA A+ L +K ++AD Sbjct: 185 SVGHTETQARQAIDQALSSKKAFRSVAD 212 >gi|154508894|ref|ZP_02044536.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC 17982] gi|153798528|gb|EDN80948.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC 17982] Length = 207 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 86/178 (48%), Gaps = 8/178 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD-FCTLFVETHMRQDQIRLFGF 63 ++G + + D++ I V G+ + ++ + G D T+F +R+D + L+GF Sbjct: 11 LRGTVASVGLDHIDIVVGGIGFRVH--VTPAFAQGASRDQEMTVFTSMIVREDSMTLYGF 68 Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 S +R F + SV G+G ++A+ L+ + +L ++ Q+ + +IPG+ K A R Sbjct: 69 ESADERDVFTKMLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSTLQRIPGVGKKSAQR 128 Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 + E+ K + ++ + A + + A +ALV LG+ + QA A+ Sbjct: 129 MALEIGDKLGTPAA-----LPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181 >gi|322374230|ref|ZP_08048762.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150] gi|321276834|gb|EFX53907.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150] Length = 196 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSS 137 A +++ +L GK L S Sbjct: 120 AQQMVLDLAGKFAELPS 136 >gi|293192652|ref|ZP_06609606.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus F0309] gi|292820159|gb|EFF79156.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus F0309] Length = 207 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 8/178 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD-FCTLFVETHMRQDQIRLFGF 63 ++G + + D++ I V G+ + ++ + G D T+F +R+D + L+GF Sbjct: 11 LRGTVASVGLDHIDIVVGGIGFRVH--VTPAFAQGASRDQEMTVFTSMIVREDLMTLYGF 68 Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 S +R F L SV G+G ++A+ L+ + +L ++ Q+ + +IPG+ K A R Sbjct: 69 ESADERDVFTKLLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSALQRIPGVGKKSAQR 128 Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 + E+ K + ++ + A + + A +ALV LG+ + QA A+ Sbjct: 129 MALEIGDKLGTPAA-----LPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181 >gi|222823639|ref|YP_002575213.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter lari RM2100] gi|254766949|sp|B9KFX7|RUVA_CAMLR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222538861|gb|ACM63962.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter lari RM2100] Length = 183 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 VL GV Y +Y +L C G L + +++D +L+GFL +++ F L Sbjct: 18 VLKTSSGVSYGVYV---SLFCSGNFEKDQKIELSITQIIKEDSHKLYGFLDTNEQRMFEL 74 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L + G+GA AM + S + ++ + V ++PGI K A RI+ EL I+ Sbjct: 75 LIKISGIGATTAMALCSSLDTNTFYTALQSGDESVFKKVPGIGPKSAKRIIAELSDAKIN 134 Query: 135 LSSVVQ 140 + + Q Sbjct: 135 IENSNQ 140 >gi|297518838|ref|ZP_06937224.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50] Length = 101 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 53/101 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y + P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101 +GF + +R F L GVG ++A+ +LS ++A + V + Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNA 101 >gi|78184871|ref|YP_377306.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9902] gi|123770922|sp|Q3AVK0|RUVA_SYNS9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78169165|gb|ABB26262.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp. CC9902] Length = 214 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105 TL++ R+D LFGF S +R F LL V GVG + + +L ELV +I Sbjct: 49 TLWIHQVQREDGSSLFGFPSRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGG 108 Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA 163 + K + Q GI + A R+ +L+ + + Q + + EQ +P + Sbjct: 109 DLKRLCQAQGIGKRTAERLAVDLRTPIAAFGGLEPQPSLVEGLASEQ-----IPEAGEDV 163 Query: 164 ISALVNLGYGQDQATTAVVSV 184 + L++LGY + + A+ ++ Sbjct: 164 EATLISLGYDELEIRRAIRAI 184 >gi|320547648|ref|ZP_08041933.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus equinus ATCC 9812] gi|320447723|gb|EFW88481.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus equinus ATCC 9812] Length = 197 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 12/174 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVVEAGGLGYIINVA-NPYSFSDLMNQDVQIYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + + + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGK--AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK +S+ + + V EQ A+ AL+ LGY Sbjct: 120 AQQVVLDLAGKFADVSMENGLASQAKAVANEQLE---------EAMEALLALGY 164 >gi|296504911|ref|YP_003666611.1| Holliday junction DNA helicase motor [Bacillus thuringiensis BMB171] gi|296325963|gb|ADH08891.1| Holliday junction DNA helicase motor [Bacillus thuringiensis BMB171] Length = 150 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 14/135 (10%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 3 LYGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKK 62 Query: 120 IASRIMTELKGKAISLSSVVQQ-------DMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +LKGK L+ VV D ++++ + A+ AL LGY Sbjct: 63 TARQMILDLKGK---LADVVPDAFVDLFSDTERFDEKKGSSAELD----EALEALRALGY 115 Query: 173 GQDQATTAVVSVLKK 187 + + + V +LK+ Sbjct: 116 AEREVSRVVPELLKE 130 >gi|124025644|ref|YP_001014760.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. NATL1A] gi|166230583|sp|A2C1Y5|RUVA_PROM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123960712|gb|ABM75495.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. NATL1A] Length = 224 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+D L+GF+ R F + SV G+G ++ M +L +LV +I + S ++ + Sbjct: 57 REDGTSLYGFIEVNQRDLFREIISVNGIGPQIGMAMLEEFEVPQLVNAIENKESNLLTKT 116 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGY 172 GI +IA R++ EL+ K L D + ++ + S I+ I ++N LGY Sbjct: 117 QGIGKRIAERLIVELRNK---LQRFTDNDKTIHENKKGIEANQFSKYIDEIYLILNSLGY 173 Query: 173 GQDQ--ATTAVVSVLKKEKNI 191 ++ + ++++ +KE ++ Sbjct: 174 VDNEIKESIKIITINEKENSL 194 >gi|87308915|ref|ZP_01091053.1| probable holliday junction DNA helicase ruvA [Blastopirellula marina DSM 3645] gi|87288258|gb|EAQ80154.1| probable holliday junction DNA helicase ruvA [Blastopirellula marina DSM 3645] Length = 208 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 14/200 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP---IRTL-SCLGKIGDFCTL-FVETHMRQ 55 MI KI G + + E + + V Y + P R L + LG+ T+ ++E + +Q Sbjct: 1 MITKITGKVTSVSEAVLTLTVGAFEYEVLIPEFVRRQLQNHLGEEVALHTIEYLEGNPQQ 60 Query: 56 DQI--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++ R+ GF ++R++F L SV GVG R A+ + R E+ I Q++K ++ + Sbjct: 61 GRLTPRMIGFSDRIEREFFELFCSVDGVGVRKALRAMVR-PVQEVASLIEEQDTKGLSAL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ A RI+ +L+ K + +V + + + S L +LG+ Sbjct: 120 PGVGPATADRIVAKLRRKVPKFALLVGRSELGEDIAPRDVIS------ETFDVLRSLGHS 173 Query: 174 QDQATTAVVSVLKKEKNIAD 193 + A + + L+++K D Sbjct: 174 ESDARRLIDAALEEKKKYKD 193 >gi|78212692|ref|YP_381471.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp. CC9605] gi|123756909|sp|Q3AKG6|RUVA_SYNSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78197151|gb|ABB34916.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9605] Length = 214 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 8/176 (4%) Query: 1 MIGKIKG----NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 M+G +KG ++ + ++ GV Y + R L + L++ + D Sbjct: 1 MVGWLKGLIVYKLQRGNRSQITLNCNGVGYEVQITQREWLTL-ENDQTIQLWIHQSISAD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + FGF S +R F L SV GVG + M ++ + ELVE+I + + + + GI Sbjct: 60 NWQFFGFKSTQERDIFRELISVNGVGPQAGMALMQECKSQELVEAISNGDLRRLCKAQGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 + A R+ EL+ S+++ D + E MP + + L LGY Sbjct: 120 GKRTAERLAVELRA---SIAAFAGMDPAPSLAEGVSSEQMPESGADVEATLSMLGY 172 >gi|260222298|emb|CBA31722.1| Holliday junction ATP-dependent DNA helicase ruvA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 139 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 44/74 (59%) Query: 53 MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 +R+D L+GF + +R+ F L + GVG R A+ VLS + +L +++ LQ + + + Sbjct: 2 VREDAQILYGFATSTEREAFRELIKISGVGPRTALSVLSGMDVGDLAQAVTLQEAGRLIK 61 Query: 113 IPGISMKIASRIMT 126 +PGI K A R++ Sbjct: 62 VPGIGKKTAERLLL 75 >gi|87304141|ref|ZP_01086682.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701] gi|87281448|gb|EAQ73513.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701] Length = 197 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 7/141 (4%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105 TL++ R+D LFGF +R F LL V GVG + + +L ELV +I Sbjct: 49 TLWIHQVQREDGSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGG 108 Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA 163 + K + Q GI + A R+ +L+ + + Q + + EQ +P + Sbjct: 109 DLKRLCQAQGIGKRTAERLAVDLRTPIAAFGGLDPQPSLVEGLASEQ-----IPEAGEDV 163 Query: 164 ISALVNLGYGQDQATTAVVSV 184 + L++LGY + + A+ ++ Sbjct: 164 EATLISLGYDELEIRRAIRAI 184 >gi|116070445|ref|ZP_01467714.1| DNA recombination protein, RuvA [Synechococcus sp. BL107] gi|116065850|gb|EAU71607.1| DNA recombination protein, RuvA [Synechococcus sp. BL107] Length = 214 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 7/141 (4%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105 TL++ R+D LFGF +R F LL V GVG + + +L ELV +I Sbjct: 49 TLWIHQVQREDGSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPHELVAAISGG 108 Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA 163 + K + Q GI + A R+ +L+ + + Q + + EQ +P + Sbjct: 109 DLKRLCQAQGIGKRTAERLAVDLRTPIAAFGGLDPQPSLVEGLASEQ-----IPEAGEDV 163 Query: 164 ISALVNLGYGQDQATTAVVSV 184 + L++LGY + + A+ ++ Sbjct: 164 EATLISLGYDELEIRRAIRAI 184 >gi|116627021|ref|YP_819640.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus LMD-9] gi|122268374|sp|Q03MX8|RUVA_STRTD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116100298|gb|ABJ65444.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus thermophilus LMD-9] gi|312277481|gb|ADQ62138.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus thermophilus ND03] Length = 196 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKHIVIETNGLGYIVTVA-NPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSS 137 A +++ +L GK L + Sbjct: 120 AQQMVLDLAGKFAELPA 136 >gi|72382108|ref|YP_291463.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str. NATL2A] gi|90135557|sp|Q46L68|RUVA_PROMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72001958|gb|AAZ57760.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus marinus str. NATL2A] Length = 224 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 6/141 (4%) Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+D L+GF+ R F + SV G+G ++ M +L +LV +I + S ++ + Sbjct: 57 REDGTSLYGFIEVNQRDLFREIISVNGIGPQIGMAMLEEFEVPQLVNAIENKESNLLTKT 116 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGY 172 GI +IA R++ EL+ K L D + + + S I+ I ++N LGY Sbjct: 117 QGIGKRIAERLIVELRNK---LQRFTDNDKTIHENKNDIEANQFSKYIDEIYLILNSLGY 173 Query: 173 GQDQ--ATTAVVSVLKKEKNI 191 ++ + ++++ +KE ++ Sbjct: 174 VDNEIKESIKIITINEKENSL 194 >gi|55820159|ref|YP_138601.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus LMG 18311] gi|55822047|ref|YP_140488.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus CNRZ1066] gi|81559960|sp|Q5M1Y4|RUVA_STRT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81561136|sp|Q5M6H5|RUVA_STRT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|55736144|gb|AAV59786.1| Holliday junction DNA helicase, subunit A [Streptococcus thermophilus LMG 18311] gi|55738032|gb|AAV61673.1| Holliday junction DNA helicase, subunit A [Streptococcus thermophilus CNRZ1066] Length = 196 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKHIVIETNGLGYIVTVA-NPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSS 137 A +++ +L GK L + Sbjct: 120 AQQMVLDLAGKFAELPA 136 >gi|239618103|ref|YP_002941425.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1] gi|259495648|sp|C5CFS3|RUVA_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239506934|gb|ACR80421.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1] Length = 195 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 14/148 (9%) Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 ++GF + F++L +G ++A+ +LS + L + I ++ ++++PG+ Sbjct: 59 EIYGFKDRAEYNVFLMLLKANKIGPKMALKILSATSPEMLQKMIASKDISGLSRLPGLGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A R+++EL + +++S V++ +A+ AL LG+ A Sbjct: 119 KTAERLVSELYDLVKDYAVEFPKELSDVSE-------------DAVGALTALGFDMTSAK 165 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV VL KE+ + + +++R ALR ++ Sbjct: 166 LAVNEVL-KEQTVENTQELVRKALRKLN 192 >gi|159903243|ref|YP_001550587.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9211] gi|229560117|sp|A9B9X1|RUVA_PROM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|159888419|gb|ABX08633.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9211] Length = 223 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 11/138 (7%) Query: 1 MIGKIKGNI-----EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG +KG G +VL GV Y I R L L + ++++ +++ Sbjct: 1 MIGWLKGEKIDHWNNGNRAGFVL-SCNGVGYEIQLSRRNLIALNNY-NVLSIWIHQVLKE 58 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV--IAQI 113 D LFGF+ +R F L +V GVG ++AM +L + +L+ ++ QN +V + + Sbjct: 59 DGSNLFGFIEKSERDLFRKLITVSGVGPQLAMSLLDDNSYEQLIANV--QNKEVTKLTRS 116 Query: 114 PGISMKIASRIMTELKGK 131 G+ + A R++ EL+ K Sbjct: 117 SGVGKRTAERLILELQNK 134 >gi|302338526|ref|YP_003803732.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM 11293] gi|301635711|gb|ADK81138.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM 11293] Length = 202 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 17/164 (10%) Query: 46 TLFVETHM--RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESII 103 T+ + H+ R+D + LF F S +R F L V G+G + A+ +LS + A + ++ Sbjct: 44 TVQIPVHLIHREDAMLLFAFASKKERNLFRELLKVSGIGPKQAVRILSGMEADRFIAALE 103 Query: 104 LQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 ++ +++ IPG+ K A +I+ L+GK + S+P + Sbjct: 104 NEDVDLLSSIPGVGKKSAGKIILALRGKLTPAEEEGEAGD----------ESLPFKEL-- 151 Query: 164 ISALVNLGYGQ---DQATTAVVSVLKKEKNIADDSQIIRLALRA 204 + AL +G+ + ++A A ++ L+ E+ D ++ R RA Sbjct: 152 VEALNGMGFDRKLAEKALKAALNELEPERFEHDHEKLERELFRA 195 >gi|213420857|ref|ZP_03353923.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 106 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +IG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 8 VIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 67 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 +GF + +R F L GVG ++A+ +LS ++A + V Sbjct: 68 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFV 106 >gi|169836512|ref|ZP_02869700.1| Holliday junction DNA helicase RuvA [candidate division TM7 single-cell isolate TM7a] Length = 76 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 41/67 (61%) Query: 51 THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110 T++++D I L+GF + +R+ F L S+ GVG ++A+ +LS E++E + SK++ Sbjct: 10 TNVKEDDISLYGFKTQNERELFKALISISGVGPKLAIAILSTFNMREIIEIVTEDESKIL 69 Query: 111 AQIPGIS 117 + G+ Sbjct: 70 QEFQGLE 76 >gi|33865569|ref|NP_897128.1| Holliday junction DNA helicase RuvA [Synechococcus sp. WH 8102] gi|44888398|sp|Q7U7F0|RUVA_SYNPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33632738|emb|CAE07550.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 8102] Length = 205 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 5/135 (3%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG +KG+++ + + VLI GV Y + R + ++ + D Sbjct: 1 MIGWLKGDVQHRDQKGSRNLVLIACGGVGYDVQLIERDWQAV-STDQRHEFWIHQVVSAD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 ++LFGFL +R F L V GVG + + +L+ ELV +++ + K + + G+ Sbjct: 60 NLQLFGFLQLAERDLFRELIQVSGVGPQAGLALLNACAYKELVTALVHSDLKTLCRAKGV 119 Query: 117 SMKIASRIMTELKGK 131 + A R+ EL+ + Sbjct: 120 GKRTAERLALELRTR 134 >gi|213029463|ref|ZP_03343910.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 96 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 48/94 (51%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y ++ P+ L + G +F +R+D L+GF + +R F L GVG ++ Sbjct: 2 YEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKL 61 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 A+ +LS ++A + V ++ + + ++PGI K Sbjct: 62 ALAILSGMSAQQFVNAVEREELGALVKLPGIGKK 95 >gi|284931638|gb|ADC31576.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma gallisepticum str. F] Length = 226 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 22/163 (13%) Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS-KVIAQIPGIS 117 L+ F S +++WF L ++ G+G + AM V+ + E V ++I N + ++ I+ Sbjct: 62 ELYAFKSLKEKEWFKTLLTINGIGPKTAMNVM--VNKQEEVLTLIKNNDLNGLLRLENIN 119 Query: 118 MKIASRIMTE-------LKGKAISLSSVVQQ--------DMSCVNKEQAHICSMPSFAIN 162 K+A+ ++ LK + + V Q D +N ++ + I Sbjct: 120 KKVATMLLASDIASKHYLKNQIVVSDKVEPQIDDDEKIDDSKDLNDDEL----LSEIVIE 175 Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 AI L++LGY Q+Q TA+ + K ++I D + ++ + ++ I Sbjct: 176 AIDCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218 >gi|31544808|ref|NP_853386.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma gallisepticum str. R(low)] gi|81572800|sp|Q7NAN2|RUVA_MYCGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|31541654|gb|AAP56954.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma gallisepticum str. R(low)] gi|284930882|gb|ADC30821.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma gallisepticum str. R(high)] Length = 226 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 22/163 (13%) Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS-KVIAQIPGIS 117 L+ F S +++WF L ++ G+G + AM V+ + E V ++I N + ++ I+ Sbjct: 62 ELYAFKSLKEKEWFKALLTINGIGPKTAMNVM--VNKQEEVLTLIKNNDLNGLLRLENIN 119 Query: 118 MKIASRIMTE-------LKGKAISLSSVVQQ--------DMSCVNKEQAHICSMPSFAIN 162 K+A+ ++ LK + + V Q D +N ++ + I Sbjct: 120 KKVATMLLASDIASKHYLKNQIVVSDKVEPQIDDDEKIDDSKDLNDDEL----LSEIVIE 175 Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 AI L++LGY Q+Q TA+ + K ++I D + ++ + ++ I Sbjct: 176 AIDCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218 >gi|312865841|ref|ZP_07726063.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415] gi|311098716|gb|EFQ56938.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415] Length = 196 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y++++ G+ Y++ S ++ +++ +R+D L Sbjct: 1 MYDYLKGILTKITAKYIVVEAGGLGYMVNVA-NPYSFSDQMNQDIQIYLHYVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 YGFHNEEEKAVFLNLISVSGIGPTTALAIVAVDDNEGLVAAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 A +++ +L GK + V Q D + Q+ ++ A+ AL LGY Sbjct: 120 AQQMVLDLAGKFV---EVPQADGKTSPQAQSTNQNLNE----AMEALQALGY 164 >gi|224540665|ref|ZP_03681204.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus DSM 14838] gi|224517737|gb|EEF86842.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus DSM 14838] Length = 115 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 11/119 (9%) Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK----AISLSSVVQQDMS 144 +LS ++ ELV I +N+ ++ + GI +K A R++ +LK K A S S + Sbjct: 2 ILSALSPAELVNVISTENANLLKTVKGIGLKTAQRVIVDLKDKIKTGAASAGSTIGSLGG 61 Query: 145 CVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 ++ A + AI+AL LG+ Q + V+++LK+E + A Q+I+LAL+ Sbjct: 62 MLSAANAQVQE------EAIAALTMLGFAQAPSQKVVLAILKEEPD-APVEQVIKLALK 113 >gi|194246569|ref|YP_002004208.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus Phytoplasma mali] gi|254767381|sp|B3R0J1|RUVA_PHYMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193806926|emb|CAP18355.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus Phytoplasma mali] Length = 186 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 29/206 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + +++V++D + Y I I + +I FV H++++ L Sbjct: 1 MYSYIKGKVVNNGQNFVIVDNNNIGYHI---IVSNPYFYEINKEYKFFVHFHIKENLQIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGISMK 119 +GF + + +F L V +G + A+ +LS E V I N V + + PGI +K Sbjct: 58 YGFNDNKNLLFFKKLLDVPTIGPKSAL-MLSETDNLEQVFQAIENNDNVYLRKFPGIGIK 116 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKG I ++ +N ++ + + L+NLG+ Sbjct: 117 SAQQIILKLKGDLIFSEKII------LNPKKTELEKI----------LLNLGF----VKK 156 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + SVL N DD + + L L+ + Sbjct: 157 EIKSVL----NQIDDKKELELMLKEV 178 >gi|1941919|emb|CAA63622.1| orf4 [Bacillus subtilis subsp. subtilis str. 168] Length = 105 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTP---NPFIYKERSQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102 +GF + ++ F L +V G+G + A+ +L ++++I Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAI 99 >gi|161936257|ref|YP_115931.2| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 232] Length = 221 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 14/140 (10%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-----TLFVETHMRQDQIRLFGFLSDLDR 69 +Y++++ G Y+IY P +I F +++ H +GF S +R Sbjct: 15 NYLILENHGSGYLIYVP--------RIDRFSRDENRKIYIYEHENDYTKITYGFASFRER 66 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ E + Sbjct: 67 ILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQ 125 Query: 130 GKAISLSSVVQQDMSCVNKE 149 K + + N E Sbjct: 126 KKYERFNENHKNQTEETNPE 145 >gi|32473207|ref|NP_866201.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica SH 1] gi|81661574|sp|Q7USB0|RUVA_RHOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|32397886|emb|CAD73887.1| probable holliday junction DNA helicase ruvA [Rhodopirellula baltica SH 1] gi|327540460|gb|EGF27045.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica WH47] Length = 207 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTL----FVETHMRQ 55 MI I G + + E V+I Y +Y T L +IG+ L ++E + + Sbjct: 1 MIVSIAGKLVQVGEISVIIQAAPFDYEVYVGDYTRRQLQNQIGNEVRLHTLDYIEGNAQG 60 Query: 56 DQI--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++ RL GF + +RQ+F L SV GVG + A+ + R EL I Q++K ++ + Sbjct: 61 GRLTPRLIGFSTLPERQFFDLFCSVDGVGVKKALRAMVR-PVKELAVLIEEQDAKTLSAL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 PGI + +++ +L+ K + +V +++ + ++ I S + ALV LG+ Sbjct: 120 PGIGPATSEKVIAKLRRKMPRFALMVAGGEVADAMEVESPIVS------DTYDALVTLGH 173 Query: 173 GQDQATTAVVSVLKKEKNIADDSQII 198 + A + L K D ++ Sbjct: 174 SESDARKLIDETLATGKKFKDTESLL 199 >gi|153827628|ref|ZP_01980295.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae MZO-2] gi|149737900|gb|EDM52805.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae MZO-2] Length = 120 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%) Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMS 144 + + +LS +TA + V + ++ + ++PG+ K A R++ E+K + L D+ Sbjct: 1 MGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDR---LKGWGAGDLF 57 Query: 145 CVNKEQAHICSMPSFAIN----AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 + A + S P A N A+SAL+ LGY QA+ AV V K + ++IR Sbjct: 58 TPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASKAVSQVAKAGMS---SEELIRE 114 Query: 201 ALRAI 205 AL+++ Sbjct: 115 ALKSM 119 >gi|33322999|gb|AAQ07236.1|AF496544_1 holliday junction DNA helicase [Lactobacillus delbrueckii subsp. lactis] Length = 83 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++++ L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPT---PYAYKNGDKARIYVEQVVRENRMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVA 86 +GF S D+ F L V G+G + A Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSA 83 >gi|72080739|ref|YP_287797.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448] gi|90135315|sp|Q4A7W5|RUVA_MYCH7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71913863|gb|AAZ53774.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448] Length = 221 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-----TLFVETHMRQDQIRLFGFLSDLDR 69 +Y++++ G Y+IY P +I F +++ H +GF S +R Sbjct: 15 NYLILENHGSGYLIYVP--------RIDRFSRDENRKIYIYEHENDYTKITYGFASFRER 66 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ E + Sbjct: 67 ILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQ 125 Query: 130 GK 131 K Sbjct: 126 KK 127 >gi|71893769|ref|YP_279215.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J] gi|90135325|sp|Q4A9R7|RUVA_MYCHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71851896|gb|AAZ44504.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J] Length = 221 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-----TLFVETHMRQDQIRLFGFLSDLDR 69 +Y++++ G Y+IY P +I F +++ H +GF S +R Sbjct: 15 NYLILENHGSGYLIYVP--------RIDRFSRDENRKIYIYEHENDYTKITYGFASFRER 66 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ E + Sbjct: 67 ILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQ 125 Query: 130 GK 131 K Sbjct: 126 KK 127 >gi|206895983|ref|YP_002247234.1| holliday junction ATP-dependent DNA helicase RuvA, putative [Coprothermobacter proteolyticus DSM 5265] gi|206738600|gb|ACI17678.1| holliday junction ATP-dependent DNA helicase RuvA, putative [Coprothermobacter proteolyticus DSM 5265] Length = 182 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 8/140 (5%) Query: 31 PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 I C + GD LF + + IR+F F + + F +L++V+GVG A +L Sbjct: 25 SIEVTRCTTRAGDGEYLFFVSF--DNDIRVFVFSNKEEFGLFQVLKNVKGVGNIKASRIL 82 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD-MSCVNKE 149 S +L+ I + +A +PGI + A RI+ EL G+ D M VN Sbjct: 83 SLYDVQQLLNMIKAGDEHELALLPGIGERTAKRIVAELSGRLTHTRHDFDNDFMEVVNA- 141 Query: 150 QAHICSMPSFAINAISALVN 169 C + + N ++ L+N Sbjct: 142 ---ACDL-GYERNVVTELLN 157 >gi|312601377|gb|ADQ90632.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma hyopneumoniae 168] Length = 221 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC-----TLFVETHMRQDQIRLFGFLSDLDR 69 +Y++++ G Y+IY P +I F +++ H +GF S +R Sbjct: 15 NYLILENHGSGYLIYVP--------RIDRFNRDENRKIYIYEHENDYTKITYGFASFRER 66 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ E + Sbjct: 67 ILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQ 125 Query: 130 GK 131 K Sbjct: 126 KK 127 >gi|255027975|ref|ZP_05299961.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-003] Length = 110 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQIITG-NPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102 FGF + +R F L SV G+G + A+ +++ L+ +I Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAI 101 >gi|113474071|ref|YP_720132.1| DNA recombination protein RuvA [Trichodesmium erythraeum IMS101] gi|110165119|gb|ABG49659.1| DNA recombination protein, RuvA [Trichodesmium erythraeum IMS101] Length = 109 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + +Y+ V+++V V Y + R L + G +F MR+ Sbjct: 1 MINYLKGKVANVYKGSGFRMTVILEVNQVGYELQVLPRLTQSLQE-GKQVQVFTHQQMRE 59 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 DQ+ L+GF + +R F L SV G+GA++A+ +L Sbjct: 60 DQMVLYGFGTSAERDLFRQLVSVSGIGAQLAIALL 94 >gi|224540664|ref|ZP_03681203.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus DSM 14838] gi|224517736|gb|EEF86841.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus DSM 14838] Length = 82 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI I+G + L +ID G+ Y + + T + + GK C L++ +R+D Sbjct: 1 MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAIQGK--KECKLYIYEAIREDAYV 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGA 83 L+GF +R+ F+LL SV G+G Sbjct: 59 LYGFADKQERELFLLLISVSGIGG 82 >gi|328471586|gb|EGF42464.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus MTCC 5462] Length = 114 Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L SV G+G + A+ +L+ +++ L +I + K + + PGI K A++I+ +LKGK Sbjct: 3 LLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQIILDLKGK 59 >gi|330723322|gb|AEC45692.1| Holliday junction DNA helicase RuvA [Mycoplasma hyorhinis MCLD] Length = 213 Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 7/137 (5%) Query: 14 EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 ++Y++++ V ++IY P + K + +++ + + +GF + +R F Sbjct: 14 KNYLILEQNYVGHLIYVP--NIDRFEK-DESKKIYIYKYENEYSKTTYGFENFRERILFE 70 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L SVQG+G + A+ +L++ T + I + K I++ P +++K A +I+ E + K I Sbjct: 71 DLISVQGIGPKTAIAILNQGWETAM-SYIADGDWKKISEFPYLNVKNAKQIVFEFQNKYI 129 Query: 134 SLSSVVQQDMSCVNKEQ 150 + Q +NK++ Sbjct: 130 ---KIFQNYQKTLNKDK 143 >gi|304373060|ref|YP_003856269.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma hyorhinis HUB-1] gi|304309251|gb|ADM21731.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma hyorhinis HUB-1] Length = 213 Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 7/137 (5%) Query: 14 EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM 73 ++Y++++ V ++IY P + K + +++ + + +GF + +R F Sbjct: 14 KNYLILEQNYVGHLIYVP--NIDRFEK-DESKKIYIYKYENEYSKTTYGFENFRERILFE 70 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L SVQG+G + A+ +L++ T + I + K I++ P +++K A +I+ E + K I Sbjct: 71 DLISVQGIGPKTAIAILNQGWETAM-SYIADGDWKRISEFPYLNVKNAKQIVFEFQNKYI 129 Query: 134 SLSSVVQQDMSCVNKEQ 150 + Q +NK++ Sbjct: 130 ---KIFQNYQKTLNKDK 143 >gi|319776838|ref|YP_004136489.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|318037913|gb|ADV34112.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] Length = 145 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F L ++ G+G RVA VL+ + + + I N + IA+I I+ + Sbjct: 57 LYGFKELEERKLFADLLNLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 115 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCV 146 IA I+ ELK K S S V++ C+ Sbjct: 116 IARIIVEELKEKLSSKSKDVKKLKLCL 142 >gi|319776965|ref|YP_004136616.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|319777203|ref|YP_004136854.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|318038040|gb|ADV34239.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] gi|318038278|gb|ADV34477.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] Length = 145 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F L ++ G+G RVA VL+ + + + I N + IA+I I+ + Sbjct: 57 LYGFKELEERKLFADLLNLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 115 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCV 146 IA I+ ELK K S S V++ C+ Sbjct: 116 IARIIVEELKEKLSSKSKDVKKLKLCL 142 >gi|238809746|dbj|BAH69536.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 154 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F L ++ G+G RVA VL+ + + + I N + IA+I I+ + Sbjct: 66 LYGFKELEERKLFADLLNLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 124 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCV 146 IA I+ ELK K S S V++ C+ Sbjct: 125 IARIIVEELKEKLSSKSKDVKKLKLCL 151 >gi|152992646|ref|YP_001358367.1| hypothetical protein SUN_1053 [Sulfurovum sp. NBC37-1] gi|151424507|dbj|BAF72010.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 476 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 LL SV+G+G + A ++ + TELV ++ K++ +I K +R+ E K Sbjct: 415 LLTSVEGIGKKKAEKIMDKFDTTELVHALETAPEKLVEEISWFKKKFLTRLQKEWK 470 >gi|291320151|ref|YP_003515412.1| Holliday junction DNA helicase RuvA [Mycoplasma agalactiae] gi|290752483|emb|CBH40455.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae] Length = 198 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 10/118 (8%) Query: 17 VLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 ++ + QG+ Y I+ P R +I C L++ + Q + F +R F+ Sbjct: 17 IIFESQGIGYSLILPDPERV-----EIKQKCKLYLFEIKNEYQYATYAFKDFKERLLFVD 71 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQ-NSKVIAQIPGISMKIASRIMTELKGK 131 L S+ G+G R A +L+ E V ++I + N++ + +IP ++ ++A I+ EL+ K Sbjct: 72 LISLNGIGPRAAFNILN--FGFEKVAALIAEGNAEALIEIPYLNPRMARLIVAELQAK 127 >gi|15829128|ref|NP_326488.1| Holliday junction DNA helicase motor protein [Mycoplasma pulmonis UAB CTIP] gi|20455257|sp|Q98PR2|RUVA_MYCPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|14090072|emb|CAC13830.1| HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycoplasma pulmonis] Length = 197 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 27/167 (16%) Query: 47 LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ- 105 L++ + Q L+GF +R F L S+ G+G R+A+ +L+ E + S+I Sbjct: 44 LYIYELSNEYQKTLYGFTHFKERVLFEDLISINGIGPRIALILLN--DGWEKIASLIANG 101 Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 N + +++ P I++K +I+ EL+ K + +++D +PS I IS Sbjct: 102 NWETLSRYPYINVKNCHQIIFELQNK---WAKFLEKDE-----------KVPSANIQNIS 147 Query: 166 ----ALVNLGYGQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAISC 207 L LG+ ++Q A+ S N+ DD + ++ A++ IS Sbjct: 148 DATETLKMLGFKREQIKYALESA-----NLQDDVETLVENAIKKIST 189 >gi|308190042|ref|YP_003922973.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER] gi|307624784|gb|ADN69089.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER] Length = 195 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ FM L ++ G+G RVA VL+ + + + I N + IA+I I+ + Sbjct: 57 LYGFKELEERKLFMDLINLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 115 Query: 120 IASRIMTELKGKAISLSSV--VQQDMSCVN--KEQAHICSMPSFAINAI-SALVNLGYGQ 174 +A I+ EL+ K +++ Q+ + N E I M F I SAL + Q Sbjct: 116 LARIIVEELQDKWAKITNTQDAQKQVKNSNLLSEAKEILKMLGFKAAQIDSALTKVELNQ 175 Query: 175 D 175 D Sbjct: 176 D 176 >gi|207110462|ref|ZP_03244624.1| Holliday junction DNA helicase motor protein [Helicobacter pylori HPKX_438_CA4C1] Length = 102 Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 G R+A+ +LS + E I + K + Q+PGI K+A +IM +L G Sbjct: 1 GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIG 49 >gi|308189841|ref|YP_003922772.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER] gi|307624583|gb|ADN68888.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER] Length = 145 Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F L ++ G+G RVA VL+ + + + I N + IA+I I+ + Sbjct: 57 LYGFKELEERKLFADLVNLNGIGPRVAFNVLN-VGFDKAINLIRDGNIEEIAKIEYINPR 115 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCV 146 +A I+ ELK K S S V++ C+ Sbjct: 116 LARIIVEELKEKLSSKSKDVKKLKLCL 142 >gi|251771977|gb|EES52549.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum ferrodiazotrophum] Length = 211 Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust. Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTL--FVETHMRQDQI 58 MI ++ G IE D+V++ V Y + +S L +L F+ Q+ Sbjct: 1 MIARLFGTIEETGSDWVILRAGAVGYRVLLSPYAMSQLSAREKEISLRTFLLWGEHQETP 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L GFL + + F ++ + G+G A+ ++S + E+I + + ++ G+ Sbjct: 61 LLVGFLDAAEEELFHEIRRIGGLGPTKAIRMIS-LPPGSFWEAIASGDVGRLRKLKGVGE 119 Query: 119 KIASRIMTELKGKAISLSSVVQQD-MSCVNKEQAHICSMPSFAINAISALV--NLGYGQD 175 A ++++EL+ + SL S D +S P A+ A+ ++ G+ Sbjct: 120 TTAKKLVSELRDRVPSLISASPADSLSSGGSPLPEGPLSPRGAVAAVREVLVAQFGHSPS 179 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALR 203 +A + L + + + ++ R Sbjct: 180 EADAMIRRALSRNPSARTEEELFHEVYR 207 >gi|113474072|ref|YP_720133.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum IMS101] gi|110165120|gb|ABG49660.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum IMS101] Length = 119 Score = 38.9 bits (89), Expect = 0.49, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 12/122 (9%) Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 +LS +LV++I+ N++V+A+ PG+ K A RI ELK K +QD Sbjct: 1 MLSLTELPDLVQAIVGGNTRVLAKTPGVGAKTAERITLELKNKLAEW----RQDAGLTTS 56 Query: 149 EQAHICSMPSFAINAISALVNLGY-GQD--QATTAVVSVLKKEKNI-ADDSQIIRLALRA 204 + MP+ L+ LGY GQ+ Q+ AV KN A+D IR A+ Sbjct: 57 --VPVGVMPAIQEEVEMTLLALGYTGQEVIQSLQAVSKDANMSKNTNAED--WIREAISW 112 Query: 205 IS 206 +S Sbjct: 113 LS 114 >gi|148377489|ref|YP_001256365.1| Holliday junction DNA helicase motor protein [Mycoplasma agalactiae PG2] gi|229560106|sp|A5IY12|RUVA_MYCAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148291535|emb|CAL58921.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae PG2] Length = 198 Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 10/118 (8%) Query: 17 VLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 ++ + QG+ Y I+ P R +I C L++ + Q + F +R F+ Sbjct: 17 IIFESQGIGYSLILPDPERV-----EIKQKCKLYLFEIKNEYQYATYAFKDFKERLLFVD 71 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQ-NSKVIAQIPGISMKIASRIMTELKGK 131 L S+ G+G R A +L+ E V ++I + N++ + +IP ++ ++A I+ EL+ K Sbjct: 72 LISLNGIGPRAAFNILN--FGFEKVVALIAEGNAEALIEIPYLNPRMARLIVAELQAK 127 >gi|319775000|ref|YP_004137488.1| UvrABC system protein C [Haemophilus influenzae F3047] gi|329123098|ref|ZP_08251668.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116] gi|317449591|emb|CBY85796.1| UvrABC system protein C [Haemophilus influenzae F3047] gi|327471653|gb|EGF17095.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116] Length = 609 Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS+K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAERIFETLKN 608 >gi|294155532|ref|YP_003559916.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145] gi|291599949|gb|ADE19445.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145] Length = 201 Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 22/131 (16%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSR--ITATELVESIILQNSKVIAQIPGIS 117 ++GF ++R F+ L +V G+GA++AM +L T +LV S N + ++++ ++ Sbjct: 59 IYGFKDYMERILFLDLINVNGIGAKIAMNILDNGWETVADLVAS---ANYETLSKLNFVN 115 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS----ALVNLGYG 173 K A I+ L+ K + +V + + N INA+S +L LG+ Sbjct: 116 EKNARNIILSLQDKWKKIRNVSNSNETAKN-------------INALSDVSESLKMLGFK 162 Query: 174 QDQATTAVVSV 184 + Q + A+ + Sbjct: 163 EKQISYALSKI 173 >gi|26553733|ref|NP_757667.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2] gi|38258589|sp|Q8EWC5|RUVA_MYCPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|26453740|dbj|BAC44071.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2] Length = 219 Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 45 CTLFVETHMRQDQ-----IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 +FV T + Q+ +GF + ++ +F L +V G+G + ++ +L R L Sbjct: 42 AKIFVYTKIFQNNKNNFLFEYYGFKTLREKIFFENLLTVNGIGPKTSLTIL-RNDLNLLK 100 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMT----ELKGKAISLSSVVQQDMSCVNKEQAHICS 155 E I ++ + ++ + G + K A I++ +LK + IS + + S +N++ Sbjct: 101 ELIRNEDIESLSVLEGFTNKTALSIVSALSYKLKNERISEYNN-DVNHSSINQQSNSYNP 159 Query: 156 MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206 +P +SAL LGY ++ A+ ++ + N+++D S +I A++ IS Sbjct: 160 VPDL----VSALKALGYKKNMIEKAINLLIPQLSNVSEDQISDLISQAIKIIS 208 >gi|254458423|ref|ZP_05071848.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1] gi|207084731|gb|EDZ62018.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1] Length = 475 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L SV GVGA+ ++ + V ++ QN+ ++ ++ GI+ K+AS+I K Sbjct: 416 FLTSVDGVGAKKVEKIVKHFGNVDEVVGVLHQNTSILTEVKGITKKLASKIEKAWK 471 >gi|313665319|ref|YP_004047190.1| Holliday junction DNA helicase RuvA [Mycoplasma leachii PG50] gi|312949212|gb|ADR23808.1| putative Holliday junction DNA helicase RuvA [Mycoplasma leachii PG50] Length = 186 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 K+ + +++ T++ + + +GF + L R F +L ++ +G + A +L + EL+ Sbjct: 39 KLSENNKIYIATNVIDNLFKCYGFYNQLVRDLFEILININTIGEKTAFLILENYSYEELI 98 Query: 100 ESIILQNSKV--IAQIPGISMKIASRIMT 126 + I +N+K I Q+ GI A I+ Sbjct: 99 D--IFKNAKTDKILQLKGIGSYTARLIIN 125 >gi|308189833|ref|YP_003922764.1| Holliday junction DNA helicase [Mycoplasma fermentans JER] gi|319777048|ref|YP_004136699.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|238809832|dbj|BAH69622.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624575|gb|ADN68880.1| Holliday junction DNA helicase [Mycoplasma fermentans JER] gi|318038123|gb|ADV34322.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] Length = 200 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESII-LQNSKVIAQIPGISM 118 L+GF +R FM L ++ G+G RVA +L++ E V S+I L + +IP I+ Sbjct: 57 LYGFKDFKERLLFMDLINLNGIGPRVAFNILNQ--GWEKVASLIALGKVDHLIEIPYINP 114 Query: 119 KIASRIMTELKGKAISLSSV--VQQDMSCVN--KEQAHICSMPSFAINAI-SALVNLGYG 173 +IA ++ EL+ K +++ Q+ + N E M F I SAL + Sbjct: 115 RIARIVVGELQDKWAKITNTQDAQKQVKNSNLLSEAKETLKMLGFKAAQIDSALTKVELN 174 Query: 174 QD 175 QD Sbjct: 175 QD 176 >gi|193216717|ref|YP_001999959.1| Holliday junction DNA helicase RuvA [Mycoplasma arthritidis 158L3-1] gi|254767376|sp|B3PMK3|RUVA_MYCA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193002040|gb|ACF07255.1| Holliday junction DNA helicase motor protein [Mycoplasma arthritidis 158L3-1] Length = 203 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 14/178 (7%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I + +Y+++D G +IY P +S K + +F+ + +GF + Sbjct: 7 GKIMHVNTNYLILDHNGEGDLIYAP--NISRFKK-DELRKIFISQIENEYTKVTYGFDNF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + F L +QG+G + A+ +L+ I ++ + N + +IP +S KIA+ I+ Sbjct: 64 KELVIFEDLIEIQGLGPKTAISILN-IGWENVINYVATANKGALGKIPYVSSKIANAIIF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA---ISALVNLGYGQDQATTAV 181 + K M + ++A +P+ + N + + LG+ Q Q A+ Sbjct: 123 SYQDKYAKF-------MKKLTSDEAAKIKVPASSENENKFLDTMKMLGFKQQQIKFAL 173 >gi|270684462|ref|ZP_06222837.1| UvrABC system, protein C [Haemophilus influenzae HK1212] gi|270316201|gb|EFA28168.1| UvrABC system, protein C [Haemophilus influenzae HK1212] Length = 118 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVGA+ +L + + V+ L IA +PGIS+K+A RI LK Sbjct: 65 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAERIFETLK 116 >gi|145635242|ref|ZP_01790946.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA] gi|145267521|gb|EDK07521.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA] Length = 609 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608 >gi|229846976|ref|ZP_04467082.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1] gi|229810060|gb|EEP45780.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1] Length = 609 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608 >gi|16272031|ref|NP_438230.1| excinuclease ABC subunit C [Haemophilus influenzae Rd KW20] gi|260580639|ref|ZP_05848466.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW] gi|1174920|sp|P44489|UVRC_HAEIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|1573005|gb|AAC21735.1| excinuclease ABC, subunit C (uvrC) [Haemophilus influenzae Rd KW20] gi|260092701|gb|EEW76637.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW] Length = 609 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608 >gi|145636737|ref|ZP_01792403.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH] gi|145270035|gb|EDK09972.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH] Length = 609 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608 >gi|313678674|ref|YP_004056414.1| Holliday junction DNA helicase [Mycoplasma bovis PG45] gi|312950114|gb|ADR24709.1| Holliday junction DNA helicase [Mycoplasma bovis PG45] Length = 198 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 25/205 (12%) Query: 7 GNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 G I + ++ + QG+ Y I+ P R + C L++ + Q + F Sbjct: 7 GEIIHKHNSNIIFESQGIGYSLILPDPERV-----DVKQKCKLYLFEIKNEYQYATYAFK 61 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ-NSKVIAQIPGISMKIASR 123 +R F+ L S+ G+G + A +L+ E V ++I + N + + +IP ++ ++A Sbjct: 62 DFKERLLFVDLISLNGIGPKAAFNILN--FGFEKVSALIAEGNVEALIKIPYLNPRMARL 119 Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183 I+ EL+ K + S KE A I + A L LG+ Q A+ Sbjct: 120 IVAELQAKWSKMISP---------KEVAKISVSTNTISEAKETLKMLGFKTKQIDNALAK 170 Query: 184 VLKKEKNIADD-SQIIRLALRAISC 207 V + DD ++I A++ IS Sbjct: 171 V-----STTDDIEKMIEEAIKLIST 190 >gi|260582025|ref|ZP_05849820.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127] gi|260094915|gb|EEW78808.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127] Length = 609 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608 >gi|229845394|ref|ZP_04465525.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1] gi|229811702|gb|EEP47400.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1] Length = 609 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608 >gi|309972809|gb|ADO96010.1| Excinuclease ABC subunit C [Haemophilus influenzae R2846] Length = 609 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608 >gi|319896470|ref|YP_004134663.1| uvrabc system protein c [Haemophilus influenzae F3031] gi|317431972|emb|CBY80320.1| UvrABC system protein C [Haemophilus influenzae F3031] Length = 609 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 608 >gi|145629081|ref|ZP_01784880.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21] gi|144978584|gb|EDJ88307.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21] Length = 553 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS K+A RI LK Sbjct: 500 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISPKLAERIFETLKN 552 >gi|325973630|ref|YP_004250694.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis str. Illinois] gi|325990082|ref|YP_004249781.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis KI3806] gi|323575167|emb|CBZ40829.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis] gi|323652232|gb|ADX98314.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis str. Illinois] Length = 206 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 26/158 (16%) Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGIS 117 +LFGFLS+ + + F L +++G+G + A +L+ ++ + + ++ +A++ G + Sbjct: 60 QLFGFLSEKEFELFNSLLAIKGIGCKTAQAILT--NDWNMMYFLAEREERLKLAELRGFN 117 Query: 118 MKIASRIMTELKGKAISLSSVVQQDM--------SCVNKEQAHICSMPSFAINAISALVN 169 +KIA+ + +K SL + + C KE IS+L+ Sbjct: 118 LKIANLFIYSIKNMK-SLKNSFNKHSSSSYSDSKECKEKE-------------VISSLIK 163 Query: 170 LGYGQDQATTAVVSVLKKEKNIADD-SQIIRLALRAIS 206 +GY D A+ + + + + +D + +I L+ IS Sbjct: 164 IGYKFDDIKRALDIIRESDTELKNDFNSLINECLKTIS 201 >gi|47458434|gb|AAT27756.1| holliday junction DNA helicase RuvA [Mycoplasma mobile 163K] Length = 204 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 13/179 (7%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRLFGFLS 65 G I ++Y L++ ++IY L K D T +F+ H L+GF + Sbjct: 10 GKIVSFGKNYFLLESNYEGFLIYAA--ELEKFEK--DVVTKVFIYKHENAYSKTLYGFKT 65 Query: 66 DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +R F+ L S+ G+G + A+ L E++ I + + ++++P + +K A +I Sbjct: 66 FKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLKSAKQIC 124 Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 E + K +L ++++ S K ++ + + + L LG+ +Q A+ ++ Sbjct: 125 FEFQSKYANL---LEKENSGNLKFESKTKKITELS----NTLKTLGFKTNQINYAISNI 176 >gi|161621805|ref|YP_015967.2| Holliday junction DNA helicase motor protein [Mycoplasma mobile 163K] Length = 201 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 13/179 (7%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRLFGFLS 65 G I ++Y L++ ++IY L K D T +F+ H L+GF + Sbjct: 7 GKIVSFGKNYFLLESNYEGFLIYAA--ELEKFEK--DVVTKVFIYKHENAYSKTLYGFKT 62 Query: 66 DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +R F+ L S+ G+G + A+ L E++ I + + ++++P + +K A +I Sbjct: 63 FKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLKSAKQIC 121 Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 E + K +L ++++ S K ++ + + + L LG+ +Q A+ ++ Sbjct: 122 FEFQSKYANL---LEKENSGNLKFESKTKKITELS----NTLKTLGFKTNQINYAISNI 173 >gi|312880085|ref|ZP_07739885.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260] gi|310783376|gb|EFQ23774.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260] Length = 488 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 7/79 (8%) Query: 55 QDQIRLFGFLSDLDRQWFML----LQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110 +D+ F S R+ +L L+S+ G+G A +LSR +T+ + + ++ + Sbjct: 409 RDEAHRFAVTSHRSRRDRLLRASRLESIPGIGKGKAAQLLSRFGSTKAIARMAPED---L 465 Query: 111 AQIPGISMKIASRIMTELK 129 A+ PGI +A RI+T LK Sbjct: 466 ARTPGIGTVLAQRILTALK 484 >gi|218440087|ref|YP_002378416.1| alpha amylase catalytic region [Cyanothece sp. PCC 7424] gi|218172815|gb|ACK71548.1| alpha amylase catalytic region [Cyanothece sp. PCC 7424] Length = 622 Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Query: 3 GKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTL---FVETHMRQDQIR 59 G+I G +G Y Y + + +I+YCP L+ L D L ++ +++ + Sbjct: 108 GEIPGQPQGTYIHYAISAITPTNHILYCPYIDLNGLSHFEDLENLDLKLIKKFNSENKPQ 167 Query: 60 LFGFLSDLDR--QWF 72 ++GF D DR QW Sbjct: 168 IYGFSVDQDRIPQWL 182 >gi|1361545|pir||F64239 Holliday junction DNA helicase ruvA homolog - Mycoplasma genitalium Length = 260 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F + +++WF L + G+G++ A+ +L+ E+ + I+ N + I G++ KI Sbjct: 119 FAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVNNKI 177 Query: 121 ASRIMT 126 A +++ Sbjct: 178 ARALLS 183 >gi|108885107|ref|NP_073029.2| Holliday junction DNA helicase RuvA [Mycoplasma genitalium G37] gi|2498869|sp|Q49424|RUVA_MYCGE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84626136|gb|AAC71583.2| Holliday junction DNA helicase [Mycoplasma genitalium G37] gi|166078725|gb|ABY79343.1| Holliday junction DNA helicase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 205 Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F + +++WF L + G+G++ A+ +L+ E+ + I+ N + I G++ KI Sbjct: 64 FAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVNNKI 122 Query: 121 ASRIMT 126 A +++ Sbjct: 123 ARALLS 128 >gi|301168650|emb|CBW28241.1| excinuclease UvrABC, endonuclease subunit [Haemophilus influenzae 10810] Length = 609 Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS+K+A I LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608 >gi|148825664|ref|YP_001290417.1| excinuclease ABC subunit C [Haemophilus influenzae PittEE] gi|189038059|sp|A5UB83|UVRC_HAEIE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|148715824|gb|ABQ98034.1| excinuclease ABC subunit C [Haemophilus influenzae PittEE] Length = 609 Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS+K+A I LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608 >gi|68248608|ref|YP_247720.1| excinuclease ABC subunit C [Haemophilus influenzae 86-028NP] gi|81336965|sp|Q4QPI7|UVRC_HAEI8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|68056807|gb|AAX87060.1| UvrABC system protein C [Haemophilus influenzae 86-028NP] Length = 609 Score = 35.0 bits (79), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS+K+A I LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608 >gi|145639654|ref|ZP_01795257.1| excinuclease ABC subunit C [Haemophilus influenzae PittII] gi|145271211|gb|EDK11125.1| excinuclease ABC subunit C [Haemophilus influenzae PittII] gi|309750624|gb|ADO80608.1| Excinuclease ABC subunit C [Haemophilus influenzae R2866] Length = 609 Score = 35.0 bits (79), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS+K+A I LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608 >gi|145630645|ref|ZP_01786424.1| excinuclease ABC subunit C [Haemophilus influenzae R3021] gi|144983771|gb|EDJ91221.1| excinuclease ABC subunit C [Haemophilus influenzae R3021] Length = 609 Score = 35.0 bits (79), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + V+ L IA +PGIS+K+A I LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE---IASVPGISLKLAETIFETLKN 608 Searching..................................................done Results from round 2 >gi|289674670|ref|ZP_06495560.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. syringae FF5] gi|302187157|ref|ZP_07263830.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. syringae 642] gi|330950609|gb|EGH50869.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae Cit 7] Length = 202 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|331016439|gb|EGH96495.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 202 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHVDPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|66044657|ref|YP_234498.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. syringae B728a] gi|75502953|sp|Q4ZWL2|RUVA_PSEU2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|63255364|gb|AAY36460.1| DNA recombination protein, RuvA [Pseudomonas syringae pv. syringae B728a] gi|330968891|gb|EGH68957.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 202 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEA-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|28871123|ref|NP_793742.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato str. DC3000] gi|213969185|ref|ZP_03397324.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato T1] gi|301384820|ref|ZP_07233238.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato Max13] gi|302063526|ref|ZP_07255067.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato K40] gi|302130610|ref|ZP_07256600.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999572|sp|Q87Y34|RUVA_PSESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28854373|gb|AAO57437.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato str. DC3000] gi|213926183|gb|EEB59739.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato T1] Length = 202 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHADPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] gi|254040230|gb|ACT57026.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL Sbjct: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI Sbjct: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA Sbjct: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 VVSVLKKEKNIADDSQIIRLALRAISC Sbjct: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 >gi|257487010|ref|ZP_05641051.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009348|gb|EGH89404.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 202 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ S+ S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAESVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|330872653|gb|EGH06802.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 202 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V +K+ + AD +IR AL+ + Sbjct: 180 VSAVKEKDLSSAD---LIRRALKGM 201 >gi|71734074|ref|YP_275913.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. phaseolicola 1448A] gi|90135568|sp|Q48FC4|RUVA_PSE14 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71554627|gb|AAZ33838.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323052|gb|EFW79141.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. glycinea str. B076] gi|320329676|gb|EFW85665.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. glycinea str. race 4] gi|330877979|gb|EGH12128.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. glycinea str. race 4] gi|330892240|gb|EGH24901.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. mori str. 301020] gi|330988969|gb|EGH87072.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 202 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|289626496|ref|ZP_06459450.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650942|ref|ZP_06482285.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aesculi str. 2250] gi|330868612|gb|EGH03321.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 202 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAETDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|330959265|gb|EGH59525.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 202 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGFLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFALVSSGPNQLEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|298488209|ref|ZP_07006245.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157267|gb|EFH98351.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 202 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|330964824|gb|EGH65084.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 202 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|237800218|ref|ZP_04588679.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023075|gb|EGI03132.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 202 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G+I ++++DV GV Y + P+ TL L +G+ TL+ +R+D L Sbjct: 1 MIGRLRGSIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLYTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEA-LPGTFALVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|170723160|ref|YP_001750848.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619] gi|229560119|sp|B1JD71|RUVA_PSEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169761163|gb|ACA74479.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619] Length = 205 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 113/205 (55%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + A ELV + Q++ + ++PG+ K Sbjct: 61 YGFHEKRERELFRELIRLNGVGPKLALALMSGLEADELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + V+ + + +A+SALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPVPVSGASTAEADAVSALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K+K ++IR +L+ + Sbjct: 180 VSAI--KDKAGLSSEELIRRSLKGM 202 >gi|26987951|ref|NP_743376.1| Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440] gi|148546488|ref|YP_001266590.1| Holliday junction DNA helicase RuvA [Pseudomonas putida F1] gi|37999646|sp|Q88NJ1|RUVA_PSEPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230586|sp|A5VZU6|RUVA_PSEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24982663|gb|AAN66840.1|AE016312_11 Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440] gi|148510546|gb|ABQ77406.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas putida F1] gi|313497567|gb|ADR58933.1| RuvA [Pseudomonas putida BIRD-1] Length = 205 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 113/205 (55%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + V+ + S S +A+SALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+K ++IR +L+ + Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202 >gi|296390675|ref|ZP_06880150.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAb1] Length = 201 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 112/205 (54%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + ++ ++ + E ++ S +A+SAL+ LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWQNMP--TIAPLVMEPRGSATVSSAEADAVSALIALGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V ++ ++IR AL+ + Sbjct: 179 VAAVPGED---LSSEEMIRQALKGM 200 >gi|70732089|ref|YP_261845.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5] gi|90135592|sp|Q4K7D8|RUVA_PSEF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68346388|gb|AAY93994.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5] Length = 202 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 110/205 (53%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYEVEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R +F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFASKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQAQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + +V + V + + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEAVPSM-FALVPNQPDAPAPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K +IR AL+ + Sbjct: 180 VSAIKDK---GLSSEDMIRRALKGM 201 >gi|15596163|ref|NP_249657.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1] gi|107100423|ref|ZP_01364341.1| hypothetical protein PaerPA_01001448 [Pseudomonas aeruginosa PACS2] gi|116048891|ref|YP_792308.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa UCBPP-PA14] gi|152985106|ref|YP_001349891.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7] gi|218893063|ref|YP_002441932.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58] gi|254239314|ref|ZP_04932637.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719] gi|254245249|ref|ZP_04938571.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192] gi|313105853|ref|ZP_07792116.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016] gi|2498872|sp|Q51425|RUVA_PSEAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122257998|sp|Q02IC8|RUVA_PSEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230585|sp|A6VA06|RUVA_PSEA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725446|sp|B7UXW6|RUVA_PSEA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|9946873|gb|AAG04355.1|AE004530_8 Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1] gi|1183841|dbj|BAA11818.1| Holliday junction binding protein [Pseudomonas aeruginosa] gi|115584112|gb|ABJ10127.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa UCBPP-PA14] gi|126171245|gb|EAZ56756.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719] gi|126198627|gb|EAZ62690.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192] gi|150960264|gb|ABR82289.1| holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7] gi|218773291|emb|CAW29103.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58] gi|310878618|gb|EFQ37212.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016] Length = 201 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 112/205 (54%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + ++ ++ + E ++ S +A+SAL+ LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWENMP--TIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V ++ ++IR AL+ + Sbjct: 179 VAAVPGED---LSSEEMIRQALKGM 200 >gi|167035195|ref|YP_001670426.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1] gi|189045762|sp|B0KTJ3|RUVA_PSEPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166861683|gb|ABZ00091.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1] Length = 205 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 113/205 (55%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEAVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + V+ + S S +A+SALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+K ++IR +L+ + Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202 >gi|104783073|ref|YP_609571.1| Holliday junction DNA helicase RuvA [Pseudomonas entomophila L48] gi|123079106|sp|Q1I6E8|RUVA_PSEE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|95112060|emb|CAK16787.1| holliday junction helicase subunit A [Pseudomonas entomophila L48] Length = 205 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEPVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ V+ ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASVLVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + V+ + S S +A+SALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+K ++IR +L+ + Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202 >gi|49082750|gb|AAT50775.1| PA0966 [synthetic construct] Length = 202 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 112/205 (54%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALTLMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + ++ ++ + E ++ S +A+SAL+ LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWENMP--TIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V ++ ++IR AL+ + Sbjct: 179 VAAVPGED---LSSEEMIRQALKGM 200 >gi|89094837|ref|ZP_01167770.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92] gi|89080892|gb|EAR60131.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92] Length = 210 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + ++IDVQGV Y + + T L ++G TLF +R+D L Sbjct: 1 MIGRLKGELIEKQPPQLVIDVQGVGYEVEASMNTFYRLPELGSTLTLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS I+ +E V + ++ + ++PG+ K Sbjct: 61 YGFYDKEERSLFRTLIKANGVGPKLAITILSGISTSEFVRCVNDGDTASLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD---MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K K +L D + + A A SALV LGY QA Sbjct: 121 AERLIVEMKDKIKALGLETSGDFELSAADGPDMASFEPQADNRAEAESALVALGYKPVQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 T A+ V K + A ++IR ALR++ Sbjct: 181 TKAIEQVFKTLGSSASSEELIRHALRSM 208 >gi|262394694|ref|YP_003286548.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25] gi|262338288|gb|ACY52083.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25] Length = 203 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TAT+ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + AISAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEEEAISALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K + + Q+IR AL+++ Sbjct: 181 VSQIAKPDMS---SEQMIREALKSM 202 >gi|317491787|ref|ZP_07950222.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920221|gb|EFV41545.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 204 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPEVLLEANGVGYEVHMPMTCFYELPELGQEVIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEREEVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + S + A S A+SAL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLTGDLFNNHSDLPVPAAKKPASEIDAEGEAVSALIALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + K + AD +IR ALRA Sbjct: 181 MISKIAKPD---ADSETLIRDALRA 202 >gi|320539865|ref|ZP_08039524.1| component of RuvABC resolvasome, regulatory subunit [Serratia symbiotica str. Tucson] gi|320030051|gb|EFW12071.1| component of RuvABC resolvasome, regulatory subunit [Serratia symbiotica str. Tucson] Length = 204 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VL++ GV Y +Y P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLLEANGVGYEVYMPMTCFYQLPELGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEHEEITTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + S + + + A+SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFTNSSGSSLPATAVQTADNDTEAEAVSALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K + AD +IR ALRA Sbjct: 181 MVSKIAK---SGADCETLIRDALRA 202 >gi|330975328|gb|EGH75394.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 202 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LG +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGNKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|163802051|ref|ZP_02195947.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4] gi|159174192|gb|EDP59000.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4] Length = 204 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + S + + + + + AISAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K + Q+IR AL+++ Sbjct: 181 VVSQIAKPDM---TSEQLIREALKSM 203 >gi|229592301|ref|YP_002874420.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens SBW25] gi|312962759|ref|ZP_07777247.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] gi|259495652|sp|C3JYS8|RUVA_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229364167|emb|CAY51821.1| holliday junction helicase subunit B [Pseudomonas fluorescens SBW25] gi|311282976|gb|EFQ61569.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] Length = 203 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPITLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR +F L + GVG ++A+ ++S + ELV ++ Q++ + ++PG+ K Sbjct: 61 YGFIGKRDRDFFRELIRLNGVGPKLALALMSSLEVDELVRAVSAQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + V N+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEVVPSMFALVPNQPDMPAGQVASAESDAVSALISLGYKPQEASKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K +IR AL+ + Sbjct: 181 VSAIKDKN---LSSEDMIRRALKGM 202 >gi|91227614|ref|ZP_01261918.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 12G01] gi|91188507|gb|EAS74800.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 12G01] Length = 203 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TAT+ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + AISAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEEEAISALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K + + Q+IR AL+++ Sbjct: 181 VSQIAKPDMS---SEQMIREALKSM 202 >gi|300951483|ref|ZP_07165318.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1] gi|300956626|ref|ZP_07168905.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1] gi|300316608|gb|EFJ66392.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1] gi|300449233|gb|EFK12853.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1] Length = 203 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPTADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|146283144|ref|YP_001173297.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501] gi|166230587|sp|A4VNA4|RUVA_PSEU5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145571349|gb|ABP80455.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501] gi|327481497|gb|AEA84807.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri DSM 4166] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 114/205 (55%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHMILDVNGIGYEVEVPMTTLYRLPAVGEPVTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ V+ +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSVLVRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S+ ++ + E ++ S +A+SAL++LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWESMPA--IATLVVEPGSKTAVTSAENDAVSALISLGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ ++ ++IR AL+ + Sbjct: 179 VSAIQEEN---LSSEEMIRRALKGM 200 >gi|157161330|ref|YP_001458648.1| Holliday junction DNA helicase RuvA [Escherichia coli HS] gi|170019794|ref|YP_001724748.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739] gi|188494515|ref|ZP_03001785.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638] gi|193069860|ref|ZP_03050809.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019] gi|167012659|sp|A8A161|RUVA_ECOHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045753|sp|B1J0M7|RUVA_ECOLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157067010|gb|ABV06265.1| Holliday junction DNA helicase RuvA [Escherichia coli HS] gi|169754722|gb|ACA77421.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739] gi|188489714|gb|EDU64817.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638] gi|192956760|gb|EDV87214.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019] gi|309702085|emb|CBJ01399.1| holliday junction ATP-dependent DNA helicase [Escherichia coli ETEC H10407] gi|323937119|gb|EGB33399.1| Holliday junction DNA helicase RuvA [Escherichia coli E1520] Length = 203 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATNDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|157145359|ref|YP_001452679.1| Holliday junction DNA helicase RuvA [Citrobacter koseri ATCC BAA-895] gi|166230539|sp|A8AFI0|RUVA_CITK8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157082564|gb|ABV12242.1| hypothetical protein CKO_01099 [Citrobacter koseri ATCC BAA-895] Length = 203 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L + G T+F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPESGKEATVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|191168085|ref|ZP_03029884.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A] gi|256017935|ref|ZP_05431800.1| Holliday junction DNA helicase RuvA [Shigella sp. D9] gi|260855801|ref|YP_003229692.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O26:H11 str. 11368] gi|260868396|ref|YP_003234798.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O111:H- str. 11128] gi|300816247|ref|ZP_07096469.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1] gi|300924950|ref|ZP_07140877.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1] gi|301327650|ref|ZP_07220858.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1] gi|307314227|ref|ZP_07593837.1| Holliday junction DNA helicase RuvA [Escherichia coli W] gi|309794242|ref|ZP_07688666.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7] gi|332278969|ref|ZP_08391382.1| holliday junction helicase subunit B [Shigella sp. D9] gi|190901883|gb|EDV61633.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A] gi|257754450|dbj|BAI25952.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O26:H11 str. 11368] gi|257764752|dbj|BAI36247.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O111:H- str. 11128] gi|300418886|gb|EFK02197.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1] gi|300530937|gb|EFK51999.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1] gi|300845798|gb|EFK73558.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1] gi|306906196|gb|EFN36714.1| Holliday junction DNA helicase RuvA [Escherichia coli W] gi|308122147|gb|EFO59409.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7] gi|315061167|gb|ADT75494.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli W] gi|320198055|gb|EFW72663.1| Holliday junction DNA helicase RuvA [Escherichia coli EC4100B] gi|323152650|gb|EFZ38926.1| holliday junction DNA helicase RuvA [Escherichia coli EPECa14] gi|323180658|gb|EFZ66203.1| holliday junction DNA helicase RuvA [Escherichia coli 1180] gi|323378256|gb|ADX50524.1| Holliday junction DNA helicase RuvA [Escherichia coli KO11] gi|324113597|gb|EGC07572.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii B253] gi|324118921|gb|EGC12810.1| Holliday junction DNA helicase RuvA [Escherichia coli E1167] gi|332101321|gb|EGJ04667.1| holliday junction helicase subunit B [Shigella sp. D9] Length = 203 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|269967685|ref|ZP_06181735.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 40B] gi|269827772|gb|EEZ82056.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 40B] Length = 234 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 33 IGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 92 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TAT+ V + ++ + ++PG+ K A Sbjct: 93 GFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKTA 152 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ E+K + + + + AISAL+ LGY QA+ V Sbjct: 153 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSSATSNNAEEEAISALLALGYKPTQASKVV 212 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + K + + Q+IR AL+++ Sbjct: 213 SQIAKPDMS---SEQMIREALKSM 233 >gi|15802274|ref|NP_288298.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 EDL933] gi|15831825|ref|NP_310598.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. Sakai] gi|16129814|ref|NP_416375.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. MG1655] gi|26248127|ref|NP_754167.1| Holliday junction DNA helicase RuvA [Escherichia coli CFT073] gi|82543694|ref|YP_407641.1| Holliday junction DNA helicase RuvA [Shigella boydii Sb227] gi|89108701|ref|AP_002481.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. W3110] gi|91211086|ref|YP_541072.1| Holliday junction DNA helicase RuvA [Escherichia coli UTI89] gi|110641979|ref|YP_669709.1| Holliday junction DNA helicase RuvA [Escherichia coli 536] gi|117624013|ref|YP_852926.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC O1] gi|157159402|ref|YP_001463164.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A] gi|168747889|ref|ZP_02772911.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4113] gi|168757895|ref|ZP_02782902.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4401] gi|168762345|ref|ZP_02787352.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4501] gi|168770844|ref|ZP_02795851.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4486] gi|168776592|ref|ZP_02801599.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4196] gi|168783161|ref|ZP_02808168.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4076] gi|168788281|ref|ZP_02813288.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC869] gi|168801903|ref|ZP_02826910.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC508] gi|170081517|ref|YP_001730837.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. DH10B] gi|170683558|ref|YP_001743383.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5] gi|187730219|ref|YP_001879638.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94] gi|191173018|ref|ZP_03034552.1| Holliday junction DNA helicase RuvA [Escherichia coli F11] gi|193066070|ref|ZP_03047127.1| Holliday junction DNA helicase RuvA [Escherichia coli E22] gi|194429662|ref|ZP_03062180.1| Holliday junction DNA helicase RuvA [Escherichia coli B171] gi|195940293|ref|ZP_03085675.1| Holliday junction DNA helicase motor protein [Escherichia coli O157:H7 str. EC4024] gi|208810719|ref|ZP_03252595.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4206] gi|208816922|ref|ZP_03258042.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4045] gi|209396228|ref|YP_002270944.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4115] gi|209919228|ref|YP_002293312.1| Holliday junction DNA helicase RuvA [Escherichia coli SE11] gi|215487074|ref|YP_002329505.1| Holliday junction DNA helicase RuvA [Escherichia coli O127:H6 str. E2348/69] gi|217328695|ref|ZP_03444776.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. TW14588] gi|218554449|ref|YP_002387362.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI1] gi|218558726|ref|YP_002391639.1| Holliday junction DNA helicase RuvA [Escherichia coli S88] gi|218689799|ref|YP_002398011.1| Holliday junction DNA helicase RuvA [Escherichia coli ED1a] gi|218695427|ref|YP_002403094.1| Holliday junction DNA helicase RuvA [Escherichia coli 55989] gi|218699567|ref|YP_002407196.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI39] gi|218705362|ref|YP_002412881.1| Holliday junction DNA helicase RuvA [Escherichia coli UMN026] gi|227885711|ref|ZP_04003516.1| Holliday junction DNA helicase motor protein [Escherichia coli 83972] gi|237705815|ref|ZP_04536296.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA] gi|238901076|ref|YP_002926872.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli BW2952] gi|254793485|ref|YP_003078322.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. TW14359] gi|256022473|ref|ZP_05436338.1| Holliday junction DNA helicase RuvA [Escherichia sp. 4_1_40B] gi|260844205|ref|YP_003221983.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O103:H2 str. 12009] gi|261227638|ref|ZP_05941919.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. FRIK2000] gi|261258196|ref|ZP_05950729.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. FRIK966] gi|291283043|ref|YP_003499861.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli O55:H7 str. CB9615] gi|293405356|ref|ZP_06649348.1| ruvA [Escherichia coli FVEC1412] gi|293410173|ref|ZP_06653749.1| Holliday junction DNA helicase RuvA [Escherichia coli B354] gi|293415176|ref|ZP_06657819.1| Holliday junction DNA helicase RuvA [Escherichia coli B185] gi|293446248|ref|ZP_06662670.1| Holliday junction DNA helicase RuvA [Escherichia coli B088] gi|298380998|ref|ZP_06990597.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli FVEC1302] gi|300824197|ref|ZP_07104315.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7] gi|300899111|ref|ZP_07117394.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1] gi|300904745|ref|ZP_07122575.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1] gi|300917562|ref|ZP_07134217.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1] gi|300935836|ref|ZP_07150794.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1] gi|300982165|ref|ZP_07175900.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1] gi|300994110|ref|ZP_07180693.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1] gi|301018303|ref|ZP_07182812.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1] gi|301029311|ref|ZP_07192408.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1] gi|301050785|ref|ZP_07197642.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1] gi|301304450|ref|ZP_07210562.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1] gi|306814309|ref|ZP_07448475.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101] gi|307138524|ref|ZP_07497880.1| Holliday junction DNA helicase RuvA [Escherichia coli H736] gi|312967063|ref|ZP_07781281.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75] gi|331642475|ref|ZP_08343610.1| holliday junction DNA helicase RuvA [Escherichia coli H736] gi|331647458|ref|ZP_08348550.1| holliday junction DNA helicase RuvA [Escherichia coli M605] gi|331653270|ref|ZP_08354275.1| holliday junction DNA helicase RuvA [Escherichia coli M718] gi|331657910|ref|ZP_08358872.1| holliday junction DNA helicase RuvA [Escherichia coli TA206] gi|331673391|ref|ZP_08374159.1| holliday junction DNA helicase RuvA [Escherichia coli TA280] gi|331677742|ref|ZP_08378417.1| holliday junction DNA helicase RuvA [Escherichia coli H591] gi|331683367|ref|ZP_08383968.1| holliday junction DNA helicase RuvA [Escherichia coli H299] gi|67472389|sp|P0A809|RUVA_ECOLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67472390|sp|P0A810|RUVA_ECOL6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67472391|sp|P0A811|RUVA_ECO57 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90135806|sp|Q322E5|RUVA_SHIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123343927|sp|Q0TGX1|RUVA_ECOL5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123387921|sp|Q1RAS3|RUVA_ECOUT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230548|sp|A1AC22|RUVA_ECOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167012658|sp|A7ZMY5|RUVA_ECO24 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698730|sp|B5YR06|RUVA_ECO5E RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698731|sp|B6IBU0|RUVA_ECOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725440|sp|B7MBS0|RUVA_ECO45 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725441|sp|B7NS57|RUVA_ECO7I RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725442|sp|B7M2F2|RUVA_ECO8A RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725443|sp|B7NBL2|RUVA_ECOLU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725444|sp|B1LD10|RUVA_ECOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560029|sp|B1XHC9|RUVA_ECODH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560128|sp|B2TWQ2|RUVA_SHIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766959|sp|B7USN8|RUVA_ECO27 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766960|sp|B7L7R4|RUVA_ECO55 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766961|sp|B7MVP7|RUVA_ECO81 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|259495641|sp|C4ZQE5|RUVA_ECOBW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|5107494|pdb|1BDX|A Chain A, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|5107495|pdb|1BDX|B Chain B, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|5107496|pdb|1BDX|C Chain C, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|5107497|pdb|1BDX|D Chain D, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|9955149|pdb|1C7Y|A Chain A, E.Coli Ruva-Holliday Junction Complex gi|157831340|pdb|1HJP|A Chain A, Holliday Junction Binding Protein Ruva From E. Coli gi|12515917|gb|AAG56851.1|AE005408_9 Holliday junction helicase subunit B; branch migration; repair [Escherichia coli O157:H7 str. EDL933] gi|26108530|gb|AAN80732.1|AE016761_307 Holliday junction DNA helicase ruvA [Escherichia coli CFT073] gi|147782|gb|AAA24612.1| ruvA protein (gtg start) [Escherichia coli] gi|1736508|dbj|BAA15672.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K12 substr. W3110] gi|1788168|gb|AAC74931.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. MG1655] gi|13362039|dbj|BAB35994.1| Holliday junction helicase subunit B [Escherichia coli O157:H7 str. Sakai] gi|81245105|gb|ABB65813.1| Holliday junction helicase subunit B [Shigella boydii Sb227] gi|91072660|gb|ABE07541.1| RuvA protein, Holliday junction helicase subunit B [Escherichia coli UTI89] gi|110343571|gb|ABG69808.1| holliday junction DNA helicase RuvA [Escherichia coli 536] gi|115513137|gb|ABJ01212.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC O1] gi|157081432|gb|ABV21140.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A] gi|169889352|gb|ACB03059.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. DH10B] gi|170521276|gb|ACB19454.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5] gi|187427211|gb|ACD06485.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94] gi|187768087|gb|EDU31931.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4196] gi|188017456|gb|EDU55578.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4113] gi|188999499|gb|EDU68485.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4076] gi|189355165|gb|EDU73584.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4401] gi|189360288|gb|EDU78707.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4486] gi|189367348|gb|EDU85764.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4501] gi|189372002|gb|EDU90418.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC869] gi|189376026|gb|EDU94442.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC508] gi|190906729|gb|EDV66334.1| Holliday junction DNA helicase RuvA [Escherichia coli F11] gi|192926307|gb|EDV80944.1| Holliday junction DNA helicase RuvA [Escherichia coli E22] gi|194412304|gb|EDX28608.1| Holliday junction DNA helicase RuvA [Escherichia coli B171] gi|195182923|dbj|BAG66491.1| Holliday junction helicase subunit B [Escherichia coli O111:H-] gi|208725235|gb|EDZ74942.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4206] gi|208731265|gb|EDZ79954.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4045] gi|209157628|gb|ACI35061.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4115] gi|209767468|gb|ACI82046.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767470|gb|ACI82047.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767472|gb|ACI82048.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767474|gb|ACI82049.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767476|gb|ACI82050.1| Holliday junction helicase subunit B [Escherichia coli] gi|209912487|dbj|BAG77561.1| holliday junction helicase subunit RuvA [Escherichia coli SE11] gi|215265146|emb|CAS09534.1| RuvA component of RuvABC resolvasome, regulatory subunit [Escherichia coli O127:H6 str. E2348/69] gi|217318042|gb|EEC26469.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. TW14588] gi|218352159|emb|CAU97898.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli 55989] gi|218361217|emb|CAQ98801.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli IAI1] gi|218365495|emb|CAR03222.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli S88] gi|218369553|emb|CAR17322.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli IAI39] gi|218427363|emb|CAR08163.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli ED1a] gi|218432459|emb|CAR13352.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli UMN026] gi|222033610|emb|CAP76351.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli LF82] gi|226900572|gb|EEH86831.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA] gi|227837284|gb|EEJ47750.1| Holliday junction DNA helicase motor protein [Escherichia coli 83972] gi|238860169|gb|ACR62167.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli BW2952] gi|254592885|gb|ACT72246.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli O157:H7 str. TW14359] gi|257759352|dbj|BAI30849.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O103:H2 str. 12009] gi|260449016|gb|ACX39438.1| Holliday junction DNA helicase RuvA [Escherichia coli DH1] gi|281178931|dbj|BAI55261.1| holliday junction helicase subunit RuvA [Escherichia coli SE15] gi|284921781|emb|CBG34854.1| holliday junction ATP-dependent DNA helicase [Escherichia coli 042] gi|290762916|gb|ADD56877.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli O55:H7 str. CB9615] gi|291323078|gb|EFE62506.1| Holliday junction DNA helicase RuvA [Escherichia coli B088] gi|291427564|gb|EFF00591.1| ruvA [Escherichia coli FVEC1412] gi|291432824|gb|EFF05803.1| Holliday junction DNA helicase RuvA [Escherichia coli B185] gi|291470641|gb|EFF13125.1| Holliday junction DNA helicase RuvA [Escherichia coli B354] gi|294493531|gb|ADE92287.1| Holliday junction DNA helicase RuvA [Escherichia coli IHE3034] gi|298278440|gb|EFI19954.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli FVEC1302] gi|299877737|gb|EFI85948.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1] gi|300297540|gb|EFJ53925.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1] gi|300307321|gb|EFJ61841.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1] gi|300357268|gb|EFJ73138.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1] gi|300399739|gb|EFJ83277.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1] gi|300403329|gb|EFJ86867.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1] gi|300406372|gb|EFJ89910.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1] gi|300415216|gb|EFJ98526.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1] gi|300458948|gb|EFK22441.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1] gi|300523268|gb|EFK44337.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7] gi|300840301|gb|EFK68061.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1] gi|305852468|gb|EFM52919.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101] gi|307553880|gb|ADN46655.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli ABU 83972] gi|307626656|gb|ADN70960.1| Holliday junction DNA helicase RuvA [Escherichia coli UM146] gi|312288527|gb|EFR16429.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75] gi|312946461|gb|ADR27288.1| Holliday junction DNA helicase RuvA [Escherichia coli O83:H1 str. NRG 857C] gi|315136504|dbj|BAJ43663.1| Holliday junction DNA resolvasome [Escherichia coli DH1] gi|315257307|gb|EFU37275.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 85-1] gi|315286570|gb|EFU46005.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 110-3] gi|315290340|gb|EFU49716.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 153-1] gi|315296552|gb|EFU55849.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 16-3] gi|320173573|gb|EFW48768.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae CDC 74-1112] gi|320182601|gb|EFW57490.1| Holliday junction DNA helicase RuvA [Shigella boydii ATCC 9905] gi|320187795|gb|EFW62469.1| Holliday junction DNA helicase RuvA [Shigella flexneri CDC 796-83] gi|320188562|gb|EFW63224.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC1212] gi|320194423|gb|EFW69054.1| Holliday junction DNA helicase RuvA [Escherichia coli WV_060327] gi|320641715|gb|EFX11103.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. G5101] gi|320647075|gb|EFX15908.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str. 493-89] gi|320652358|gb|EFX20656.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str. H 2687] gi|320657959|gb|EFX25721.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658532|gb|EFX26226.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str. USDA 5905] gi|320668430|gb|EFX35257.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. LSU-61] gi|323158654|gb|EFZ44668.1| holliday junction DNA helicase RuvA [Escherichia coli E128010] gi|323174753|gb|EFZ60369.1| holliday junction DNA helicase RuvA [Escherichia coli LT-68] gi|323186868|gb|EFZ72187.1| holliday junction DNA helicase RuvA [Escherichia coli RN587/1] gi|323940471|gb|EGB36662.1| Holliday junction DNA helicase RuvA [Escherichia coli E482] gi|323948253|gb|EGB44241.1| Holliday junction DNA helicase RuvA [Escherichia coli H120] gi|323952363|gb|EGB48236.1| Holliday junction DNA helicase RuvA [Escherichia coli H252] gi|323956492|gb|EGB52234.1| Holliday junction DNA helicase RuvA [Escherichia coli H263] gi|323968281|gb|EGB63688.1| Holliday junction DNA helicase RuvA [Escherichia coli M863] gi|323977955|gb|EGB73041.1| Holliday junction DNA helicase RuvA [Escherichia coli TW10509] gi|324007232|gb|EGB76451.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 57-2] gi|324012870|gb|EGB82089.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 60-1] gi|324018004|gb|EGB87223.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 117-3] gi|325496996|gb|EGC94855.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ECD227] gi|326342241|gb|EGD66022.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. 1044] gi|326343791|gb|EGD67553.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. 1125] gi|327252987|gb|EGE64641.1| holliday junction DNA helicase RuvA [Escherichia coli STEC_7v] gi|330911671|gb|EGH40181.1| holliday junction DNA helicase RuvA [Escherichia coli AA86] gi|331039273|gb|EGI11493.1| holliday junction DNA helicase RuvA [Escherichia coli H736] gi|331043182|gb|EGI15320.1| holliday junction DNA helicase RuvA [Escherichia coli M605] gi|331049368|gb|EGI21440.1| holliday junction DNA helicase RuvA [Escherichia coli M718] gi|331056158|gb|EGI28167.1| holliday junction DNA helicase RuvA [Escherichia coli TA206] gi|331069589|gb|EGI40976.1| holliday junction DNA helicase RuvA [Escherichia coli TA280] gi|331074202|gb|EGI45522.1| holliday junction DNA helicase RuvA [Escherichia coli H591] gi|331079582|gb|EGI50779.1| holliday junction DNA helicase RuvA [Escherichia coli H299] gi|332090038|gb|EGI95138.1| holliday junction DNA helicase RuvA [Shigella boydii 5216-82] gi|332096672|gb|EGJ01663.1| holliday junction DNA helicase RuvA [Shigella boydii 3594-74] gi|332343587|gb|AEE56921.1| holliday junction DNA helicase RuvA [Escherichia coli UMNK88] gi|333003565|gb|EGK23105.1| holliday junction DNA helicase RuvA [Shigella flexneri VA-6] gi|333004714|gb|EGK24237.1| holliday junction DNA helicase RuvA [Shigella flexneri K-272] gi|333018434|gb|EGK37732.1| holliday junction DNA helicase RuvA [Shigella flexneri K-227] Length = 203 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|86146483|ref|ZP_01064806.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222] gi|218709101|ref|YP_002416722.1| Holliday junction DNA helicase RuvA [Vibrio splendidus LGP32] gi|254767400|sp|B7VMI3|RUVA_VIBSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85835746|gb|EAQ53881.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222] gi|218322120|emb|CAV18233.1| Holliday junction DNA helicase ruvA [Vibrio splendidus LGP32] Length = 203 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + ++ A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V K + Q+IR AL+++ Sbjct: 181 VSQVAK---DGMTSEQLIREALKSM 202 >gi|30063272|ref|NP_837443.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 2457T] gi|30041524|gb|AAP17252.1| Holliday junction helicase subunit B [Shigella flexneri 2a str. 2457T] gi|313650643|gb|EFS15045.1| holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 2457T] gi|332757632|gb|EGJ87965.1| holliday junction DNA helicase RuvA [Shigella flexneri 2747-71] gi|332758049|gb|EGJ88375.1| holliday junction DNA helicase RuvA [Shigella flexneri K-671] gi|333004779|gb|EGK24301.1| holliday junction DNA helicase RuvA [Shigella flexneri K-218] gi|333018630|gb|EGK37924.1| holliday junction DNA helicase RuvA [Shigella flexneri K-304] Length = 203 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + +IR ALRA Sbjct: 181 VSKIARPD---TSSETLIREALRA 201 >gi|290475277|ref|YP_003468165.1| Holliday junction helicase subunit A [Xenorhabdus bovienii SS-2004] gi|289174598|emb|CBJ81392.1| Holliday junction helicase, subunit A [Xenorhabdus bovienii SS-2004] Length = 205 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L +IG TLF + +R+D L Sbjct: 1 MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQEATLFTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAITSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + +N S A SALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSNDINLPAVAKQANSNTDIEAEAASALVSLGYKLQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K AD +IR ALRA Sbjct: 181 RMVSKVAK---PGADCETLIREALRA 203 >gi|77460629|ref|YP_350136.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf0-1] gi|90135610|sp|Q3K7V9|RUVA_PSEPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77384632|gb|ABA76145.1| holliday junction helicase subunit B [Pseudomonas fluorescens Pf0-1] Length = 202 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 109/205 (53%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R +F L + GVG ++A+ ++S + EL+ + Q++ + ++PG+ K Sbjct: 61 YGFAGKRERDFFRELIRLNGVGPKLALALMSSLEVDELIRCVQSQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + V + + + +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKNRFKAWETSPAM-FALVPNQPDGPAPVNTAENDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ +K +IR AL+ + Sbjct: 180 ISAIKEK---GLSSEDMIRRALKGM 201 >gi|153832528|ref|ZP_01985195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01] gi|148871323|gb|EDL70195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01] Length = 223 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 21 IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + + + AISAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K + Q+IR AL+++ Sbjct: 201 VSQIAKPDM---TSEQLIREALKSM 222 >gi|269963130|ref|ZP_06177465.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3] gi|269832094|gb|EEZ86218.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3] Length = 223 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 21 IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + + AISAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAGSNNAEEEAISALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K + Q+IR AL+++ Sbjct: 201 VSQIAKPDM---TSEQLIREALKSM 222 >gi|301645623|ref|ZP_07245552.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1] gi|301076155|gb|EFK90961.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1] Length = 203 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSESLIREALRA 201 >gi|74311809|ref|YP_310228.1| Holliday junction DNA helicase RuvA [Shigella sonnei Ss046] gi|90135833|sp|Q3Z2L9|RUVA_SHISS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|73855286|gb|AAZ87993.1| Holliday junction helicase subunit B [Shigella sonnei Ss046] Length = 203 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARTD---ASSETLIREALRA 201 >gi|170769415|ref|ZP_02903868.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627] gi|170121739|gb|EDS90670.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627] Length = 203 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPATDLVLTSPASPATEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|194433948|ref|ZP_03066220.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012] gi|194417820|gb|EDX33917.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012] gi|332095232|gb|EGJ00259.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 155-74] Length = 203 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYVLPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|24113211|ref|NP_707721.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 301] gi|110805805|ref|YP_689325.1| Holliday junction DNA helicase RuvA [Shigella flexneri 5 str. 8401] gi|44888467|sp|Q83KR4|RUVA_SHIFL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123342783|sp|Q0T3U5|RUVA_SHIF8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24052207|gb|AAN43428.1| Holliday junction helicase subunit B [Shigella flexneri 2a str. 301] gi|110615353|gb|ABF04020.1| Holliday junction helicase [Shigella flexneri 5 str. 8401] Length = 203 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGPLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + +IR ALRA Sbjct: 181 VSKIARPD---TSSETLIREALRA 201 >gi|156973890|ref|YP_001444797.1| Holliday junction DNA helicase motor protein [Vibrio harveyi ATCC BAA-1116] gi|156525484|gb|ABU70570.1| hypothetical protein VIBHAR_01600 [Vibrio harveyi ATCC BAA-1116] Length = 223 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 21 IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + + + AISAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K + Q+IR AL+++ Sbjct: 201 VSQIAKPDM---TSEQLIRKALKSM 222 >gi|82776447|ref|YP_402796.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae Sd197] gi|309789257|ref|ZP_07683850.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617] gi|90135814|sp|Q32HA0|RUVA_SHIDS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81240595|gb|ABB61305.1| Holliday junction helicase subunit B [Shigella dysenteriae Sd197] gi|308923011|gb|EFP68525.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617] Length = 203 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + +IR ALRA Sbjct: 181 VSKIARPD---VSSETLIREALRA 201 >gi|283785600|ref|YP_003365465.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium ICC168] gi|282949054|emb|CBG88657.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium ICC168] Length = 203 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPESGKEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + ++ A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAVEDGEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + + A +IR ALRA Sbjct: 181 VSKVARPD---ASSETLIREALRA 201 >gi|330811393|ref|YP_004355855.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379501|gb|AEA70851.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 202 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 112/205 (54%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R +F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFVGKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQSQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + +V N+ A ++ S +A++AL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEAVPAMFALVPNQPDAPAPAV-SAESDAVTALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ +K +IR AL+ + Sbjct: 180 ISAIKEK---GLSTEDMIRRALKGM 201 >gi|323495172|ref|ZP_08100257.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546] gi|323310612|gb|EGA63791.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546] Length = 205 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + A S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPYTDAAPVDSAVQASQSSAEEEAVSALLALGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+K E Q+IR AL+++ Sbjct: 181 KVVSQVMKPEM---TSEQLIREALKSM 204 >gi|27365489|ref|NP_761017.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6] gi|161486619|ref|NP_935078.2| Holliday junction DNA helicase motor protein [Vibrio vulnificus YJ016] gi|320155872|ref|YP_004188251.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O] gi|29611844|sp|Q8DAN4|RUVA_VIBVU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|44888369|sp|Q7MJ77|RUVA_VIBVY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|27361637|gb|AAO10544.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6] gi|319931184|gb|ADV86048.1| holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O] Length = 204 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 103/206 (50%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + S + + + S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K + Q+IR AL+++ Sbjct: 181 VVSQIAKPDM---TSEQLIREALKSM 203 >gi|84388519|ref|ZP_00991066.1| Holliday junction DNA helicase motor protein [Vibrio splendidus 12B01] gi|84377068|gb|EAP93939.1| Holliday junction DNA helicase motor protein [Vibrio splendidus 12B01] Length = 203 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + ++ A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V K Q+IR AL+++ Sbjct: 181 VAQVAK---GGMTSEQLIREALKSM 202 >gi|261340247|ref|ZP_05968105.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC 35316] gi|288317332|gb|EFC56270.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC 35316] Length = 203 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + S A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPSSDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V K + A +IR ALRA Sbjct: 181 VSKVAKPD---AGSETLIREALRA 201 >gi|269138790|ref|YP_003295491.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella tarda EIB202] gi|267984451|gb|ACY84280.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella tarda EIB202] gi|304558782|gb|ADM41446.1| Holliday junction DNA helicase RuvA [Edwardsiella tarda FL6-60] Length = 202 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I V+++ GV Y + P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGTILEKQPPQVVLETHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + LS + + + A++AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFTPTDDL-PPSTQPQAQADAEGEAVAALIALGYKPQEASRL 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V AD +IR ALRA Sbjct: 180 VNRVTVA---GADSETLIRDALRA 200 >gi|194439064|ref|ZP_03071147.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1] gi|253773182|ref|YP_003036013.1| Holliday junction DNA helicase RuvA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161921|ref|YP_003045029.1| Holliday junction DNA helicase RuvA [Escherichia coli B str. REL606] gi|300928892|ref|ZP_07144397.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1] gi|194422023|gb|EDX38027.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1] gi|242377582|emb|CAQ32337.1| branch migration of Holliday structures; repair, subunit of resolvasome [Escherichia coli BL21(DE3)] gi|253324226|gb|ACT28828.1| Holliday junction DNA helicase RuvA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973822|gb|ACT39493.1| Holliday junction DNA helicase motor protein [Escherichia coli B str. REL606] gi|253978016|gb|ACT43686.1| Holliday junction DNA helicase motor protein [Escherichia coli BL21(DE3)] gi|300463120|gb|EFK26613.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1] gi|323961916|gb|EGB57515.1| Holliday junction DNA helicase RuvA [Escherichia coli H489] gi|323972631|gb|EGB67834.1| Holliday junction DNA helicase RuvA [Escherichia coli TA007] Length = 203 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y + P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATNDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|296101800|ref|YP_003611946.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056259|gb|ADF60997.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 204 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L G +F + +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L + + V S A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPVSDDDAEQEAVAALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K + A +IR ALRA Sbjct: 181 MVSKIAKPD---ASSETLIREALRA 202 >gi|218548578|ref|YP_002382369.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ATCC 35469] gi|226725445|sp|B7LPI3|RUVA_ESCF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218356119|emb|CAQ88736.1| component of RuvABC resolvasome, regulatory subunit [Escherichia fergusonii ATCC 35469] Length = 203 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 3/202 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V + + + A +IR AL Sbjct: 181 VSKIARPD---ASSETLIREAL 199 >gi|148977429|ref|ZP_01814029.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium SWAT-3] gi|145963381|gb|EDK28646.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium SWAT-3] Length = 203 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + ++ A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSMPTVHDAEEEAVSALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V K+ Q+IR AL+++ Sbjct: 181 VSQVAKEGM---TSEQLIRDALKSM 202 >gi|114047572|ref|YP_738122.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7] gi|117920401|ref|YP_869593.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3] gi|123326531|sp|Q0HUZ0|RUVA_SHESR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200264|sp|A0KWL8|RUVA_SHESA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113889014|gb|ABI43065.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7] gi|117612733|gb|ABK48187.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3] Length = 205 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLIDV GV Y + P+ + L ++ T++ +R+D L Sbjct: 1 MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ D +I+ AL+++ Sbjct: 181 KAVSAAYKEGM---DSETLIKAALKSM 204 >gi|161502989|ref|YP_001570101.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864336|gb|ABX20959.1| hypothetical protein SARI_01051 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 228 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 3/203 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I VL++ GV Y ++ P+ L + G +F +R+D L+ Sbjct: 27 IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPESGKEAIIFTHFVVREDAQLLY 86 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K A Sbjct: 87 GFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKTA 146 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ E+K + L + + + A++ALV LGY +A+ V Sbjct: 147 ERLIVEMKDRFKGLHGDLFTPAVDLVLMSPASPTSEDAEQEAVAALVALGYKPQEASRMV 206 Query: 182 VSVLKKEKNIADDSQIIRLALRA 204 V + A +IR ALRA Sbjct: 207 SKVAHSD---ASSETLIRDALRA 226 >gi|56460194|ref|YP_155475.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina loihiensis L2TR] gi|81363131|sp|Q5QYU4|RUVA_IDILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56179204|gb|AAV81926.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina loihiensis L2TR] Length = 205 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + V++DVQG+ Y I P+ L +G+ L +R+D L Sbjct: 1 MIGHIQGVLTSKQPPEVVLDVQGIGYEIQLPMTCFYQLPPVGETIKLITHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL QGVG ++A+ +LS ++A E V ++ + + ++PG+ K Sbjct: 61 YGFISASERSLFRLLLKTQGVGPKLALAILSGMSADEFVMAVNQNDVTRLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQAT 178 A R++ E++ + D + ++ + P +AISAL +LGY ++QA Sbjct: 121 AERLVIEMRDRLKDWQPSTPFTDRAPLDSQGMDAREHPADARTDAISALQSLGYKENQAE 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V E N +IRLAL+ +S Sbjct: 181 KALQKVYSAEHN---SETLIRLALKQLS 205 >gi|238754860|ref|ZP_04616210.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri ATCC 29473] gi|238706871|gb|EEP99238.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri ATCC 29473] Length = 204 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G I VL++ GV Y I P+ L +IG +F + +R+D L Sbjct: 1 MIGRIRGIILEKQPPLVLLETNGVGYEIQLPMTCFYELPEIGQEAIIFTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + S + + S A+SALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTSDIPLPTTSAQVSAADAEAEAVSALVSLGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K D +IR ALR+ Sbjct: 181 LVSKIAK---PGTDCETLIRDALRS 202 >gi|146306303|ref|YP_001186768.1| Holliday junction DNA helicase motor protein [Pseudomonas mendocina ymp] gi|145574504|gb|ABP84036.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas mendocina ymp] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 113/205 (55%), Gaps = 5/205 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + ++L+DV GV Y + P+ TL L +G+ TL +R+D L+ Sbjct: 3 IGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGETLTLHTHQVVREDAHLLY 62 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K A Sbjct: 63 GFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALTKVPGVGKKTA 122 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK + + ++ ++ + E ++ S +A+SAL++LGY +A+ AV Sbjct: 123 ERLLVELKDRFKAWETMPA--IATLVVEPRLGATVSSAENDAVSALISLGYKPQEASRAV 180 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 +V +++ +IR ALR ++ Sbjct: 181 AAV---KEDGLSSEDLIRRALRGMA 202 >gi|315180569|gb|ADT87483.1| Holliday junction DNA helicase motor protein [Vibrio furnissii NCTC 11218] Length = 205 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IGD ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPLDAMGASHDQNAEEEAVSALLALGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV V + + Q+IR AL+++ Sbjct: 181 KAVSQVSQPDM---TSEQLIREALKSM 204 >gi|212212080|ref|YP_002303016.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuG_Q212] gi|226698728|sp|B6IYU3|RUVA_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212010490|gb|ACJ17871.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212] Length = 200 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G I Y+L++V GV Y I P+ T L + + L+ +R+D L Sbjct: 1 MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+ F L V GVG ++A+ +LS I E V ++ QN + +IPG+ K Sbjct: 61 YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E K + + + S +AISAL+ LGY +A A Sbjct: 121 AERLVIETKDRLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K + +IRLAL+ + Sbjct: 175 IDAIQKPD---LSAETLIRLALKQM 196 >gi|227111608|ref|ZP_03825264.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 205 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + A + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPAAADSRVSDPETEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + + AD +IR ALRA Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203 >gi|237731899|ref|ZP_04562380.1| holliday junction helicase subunit B [Citrobacter sp. 30_2] gi|226907438|gb|EEH93356.1| holliday junction helicase subunit B [Citrobacter sp. 30_2] Length = 203 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDTEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|238756969|ref|ZP_04618157.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae ATCC 35236] gi|238704799|gb|EEP97328.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae ATCC 35236] Length = 205 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L +G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPNVGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + + ++ S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALR+ Sbjct: 181 RLVSKIAK---PGADCETLIRDALRS 203 >gi|85712318|ref|ZP_01043369.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina baltica OS145] gi|85693945|gb|EAQ31892.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina baltica OS145] Length = 206 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VL+DVQGV Y I P+ L G+ TL +R+D L Sbjct: 1 MIGQIRGTLVSKQPPEVLVDVQGVGYEIQLPMTCFYQLPATGEPVTLVTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F LL QGVG ++A+ +LS + A E V ++ + + ++PG+ K Sbjct: 61 YGFNSLAERSLFRLLIKTQGVGPKLALAILSGMNADEFVWAVNQNDVSRLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQA 177 A R++ E++ + SS D + ++ P +A+SAL+ LGY QA Sbjct: 121 AERLVIEMRDRLKDWQGSSTPATDAAPLDNVSGDALVHPADARNDALSALLALGYKPVQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ +V ++ ++ +IR AL+ +S Sbjct: 181 EKALKAVYQQGES---SETLIRSALKQLS 206 >gi|146312076|ref|YP_001177150.1| Holliday junction DNA helicase RuvA [Enterobacter sp. 638] gi|167012660|sp|A4WBL9|RUVA_ENT38 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145318952|gb|ABP61099.1| Holliday junction DNA helicase subunit RuvA [Enterobacter sp. 638] Length = 203 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPDAGKEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAHQFVNAVEREDPAALIKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPNGPTSDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K + A+ +IR ALRA Sbjct: 181 VSKIAKPD---ANSETLIREALRA 201 >gi|311279238|ref|YP_003941469.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1] gi|308748433|gb|ADO48185.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1] Length = 203 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPDQGKEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 FGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAAQFVNAVEREDPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAADDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + + A+ +IR ALRA Sbjct: 181 ISKIARPD---ANSETLIREALRA 201 >gi|295095544|emb|CBK84634.1| Holliday junction DNA helicase subunit RuvA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 231 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 4/204 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I VL++V GV Y ++ P+ L + G +F + +R+D L+ Sbjct: 29 IGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGKEAVVFTQFVVREDAQLLY 88 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K A Sbjct: 89 GFNNKQERTLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKTA 148 Query: 122 SRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + L + + V S A++ALV LGY +A+ Sbjct: 149 ERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPASDDDAEQEAVAALVALGYKPQEASRM 208 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K + A +IR ALRA Sbjct: 209 VSKIAKPD---ASSETLIREALRA 229 >gi|260768875|ref|ZP_05877809.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972] gi|260616905|gb|EEX42090.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972] Length = 205 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IGD ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPLDAMGAIHDQNAEEEAVSALLALGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV V + + Q+IR AL+++ Sbjct: 181 KAVSQVAQPDM---TSEQLIREALKSM 204 >gi|149366014|ref|ZP_01888049.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125] gi|153949523|ref|YP_001401004.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP 31758] gi|161484795|ref|NP_669562.2| Holliday junction DNA helicase RuvA [Yersinia pestis KIM 10] gi|161511391|ref|NP_993241.2| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Microtus str. 91001] gi|161760577|ref|YP_070557.2| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP 32953] gi|162420589|ref|YP_001606843.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola] gi|165928362|ref|ZP_02224194.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. F1991016] gi|165938889|ref|ZP_02227443.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. IP275] gi|166009183|ref|ZP_02230081.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. E1979001] gi|166210491|ref|ZP_02236526.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401440|ref|ZP_02306937.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420007|ref|ZP_02311760.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424505|ref|ZP_02316258.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470862|ref|ZP_02335566.1| Holliday junction DNA helicase motor protein [Yersinia pestis FV-1] gi|170024378|ref|YP_001720883.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis YPIII] gi|186895407|ref|YP_001872519.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis PB1/+] gi|218929164|ref|YP_002347039.1| Holliday junction DNA helicase RuvA [Yersinia pestis CO92] gi|229894771|ref|ZP_04509951.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Pestoides A] gi|229897474|ref|ZP_04512630.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898120|ref|ZP_04513269.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901979|ref|ZP_04517100.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Nepal516] gi|270490837|ref|ZP_06207911.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27] gi|294503877|ref|YP_003567939.1| Holliday junction DNA helicase motor protein [Yersinia pestis Z176003] gi|20455249|sp|Q8ZEU6|RUVA_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90146256|sp|Q66AU0|RUVA_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167012664|sp|A7FIC6|RUVA_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560143|sp|B2K323|RUVA_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560144|sp|A9QYX3|RUVA_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560145|sp|B1JLL1|RUVA_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115347775|emb|CAL20692.1| Holliday junction DNA helicase [Yersinia pestis CO92] gi|149292427|gb|EDM42501.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125] gi|152961018|gb|ABS48479.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP 31758] gi|162353404|gb|ABX87352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola] gi|165913252|gb|EDR31875.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. IP275] gi|165919645|gb|EDR36978.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991738|gb|EDR44039.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. E1979001] gi|166207671|gb|EDR52151.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961702|gb|EDR57723.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049136|gb|EDR60544.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056387|gb|EDR66156.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750912|gb|ACA68430.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis YPIII] gi|186698433|gb|ACC89062.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis PB1/+] gi|229680875|gb|EEO76970.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Nepal516] gi|229688836|gb|EEO80903.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229693811|gb|EEO83860.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702244|gb|EEO90263.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Pestoides A] gi|262362004|gb|ACY58725.1| Holliday junction DNA helicase motor protein [Yersinia pestis D106004] gi|262365859|gb|ACY62416.1| Holliday junction DNA helicase motor protein [Yersinia pestis D182038] gi|270339341|gb|EFA50118.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27] gi|294354336|gb|ADE64677.1| Holliday junction DNA helicase motor protein [Yersinia pestis Z176003] gi|320015265|gb|ADV98836.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 204 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + ++ + S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 LVSKIAK---PGADCETLIRDALRA 202 >gi|304396235|ref|ZP_07378117.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB] gi|304356604|gb|EFM20969.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB] Length = 204 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VL++ GV Y IY P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCFYELPELQHEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAEPETNDAESEAVAALVSLGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V + + AD +IR ALRA Sbjct: 181 MISKVGRPD---ADCETLIREALRA 202 >gi|330502219|ref|YP_004379088.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01] gi|328916505|gb|AEB57336.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01] Length = 202 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 110/204 (53%), Gaps = 5/204 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + ++L+DV GV Y + P+ TL L +G+ TL +R+D L+ Sbjct: 3 IGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGEPVTLHAHLVVREDAHLLY 62 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K A Sbjct: 63 GFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALVKVPGVGKKTA 122 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK + + S+ V + A S S +A+SAL++LGY +A+ AV Sbjct: 123 ERLLVELKDRFKAWESIPSIAPLVVEPQLAQAVS--SAENDAVSALISLGYKPQEASRAV 180 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +V +++ +IR ALR + Sbjct: 181 AAV---KEDGMSSEDLIRRALRGM 201 >gi|300717084|ref|YP_003741887.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae Eb661] gi|299062920|emb|CAX60040.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae Eb661] Length = 205 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++ LF +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEANGVGYEVHMPMTCFYELPELNQEAILFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + E + A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFAADAPFALTSEVQPADAANDAEGEAVAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + + AD +IR ALRA Sbjct: 181 RMISKLGRPD---ADCETLIREALRA 203 >gi|123442635|ref|YP_001006612.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166231457|sp|A1JRJ9|RUVA_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122089596|emb|CAL12445.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 205 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L IG +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + + ++ S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RLVSKIAK---PGADCETLIRDALRA 203 >gi|197335439|ref|YP_002155714.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11] gi|226698745|sp|B5FCQ1|RUVA_VIBFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|197316929|gb|ACH66376.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11] Length = 207 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GN+ +LI+V G+ Y + P+ L ++G ++ +R+D L Sbjct: 1 MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + D + ++ I S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V V K + +IR +L+++ Sbjct: 181 ASKTVSQVAKPDM---TSEVLIRESLKSM 206 >gi|323496589|ref|ZP_08101642.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326] gi|323318335|gb|EGA71293.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326] Length = 205 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 105/207 (50%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS--SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + S + + A S A+SAL++LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSAPEVVQSSAEEEAVSALLSLGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V +L+ + ++IR AL+++ Sbjct: 181 KVVSQILQPGMS---SEELIREALKSM 204 >gi|24373977|ref|NP_718020.1| Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1] gi|38372487|sp|Q8EEF2|RUVA_SHEON RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24348428|gb|AAN55464.1|AE015684_1 Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1] Length = 205 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLIDV GV Y + P+ + L ++ T++ +R+D L Sbjct: 1 MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPELNQPTTVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + + S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPVVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ D +I+ AL+++ Sbjct: 181 KAVSAAFKEGM---DSETLIKAALKSM 204 >gi|291617754|ref|YP_003520496.1| RuvA [Pantoea ananatis LMG 20103] gi|291152784|gb|ADD77368.1| RuvA [Pantoea ananatis LMG 20103] Length = 204 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEAHGVGYEVHMPMTCFYELPDLNHEAVIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPGPEPETNDAESEAVAALVSLGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V + + AD +IR ALRA Sbjct: 181 MISKVGRPD---ADCETLIREALRA 202 >gi|283832740|ref|ZP_06352481.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC 29220] gi|291072423|gb|EFE10532.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC 29220] Length = 203 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPVTDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|149191831|ref|ZP_01870068.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1] gi|148834349|gb|EDL51349.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1] Length = 205 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y I P+ L +IG ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVGGVGYEIQMPMSCFYELPEIGQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS ++AT+ V + ++ + ++PG+ K Sbjct: 61 YGFNTVRERALFREVIKANGVGPKLGLGILSGMSATQFVACVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPVDSVGAMNADNAEEEAVSALLALGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V K + +IR ALRA+ Sbjct: 181 KVVSQVAKPDM---TSEALIREALRAM 204 >gi|113970239|ref|YP_734032.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4] gi|123029678|sp|Q0HIZ2|RUVA_SHESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113884923|gb|ABI38975.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4] Length = 205 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLIDV GV Y + P+ + L ++ T++ +R+D L Sbjct: 1 MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKKERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALLSLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ D +I+ AL+++ Sbjct: 181 KAVSAAYKEGM---DSETLIKAALKSM 204 >gi|261252501|ref|ZP_05945074.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891] gi|260935892|gb|EEX91881.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891] Length = 205 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNLGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS--SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + S + + + S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPADSVPQATQESAEEEAVSALLALGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V K + + Q+IR AL+++ Sbjct: 181 KVVSQVKKADMS---SEQLIREALKSM 204 >gi|260772519|ref|ZP_05881435.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP 69.14] gi|260611658|gb|EEX36861.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP 69.14] Length = 205 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++I+V GV Y + P+ L I + ++ +R+D L Sbjct: 1 MIGRLRGLLIEKQPPQIVIEVNGVGYEVQMPMSCFYELPNINEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLGILSGMTASQFVACVEREDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + S + + + + + + AISAL++LGY QA+ Sbjct: 121 AERLLVEMKDRLKGWGSGDLFTPATDAAPLDHSPVTAEQNAQEEAISALLSLGYKPVQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 181 KVVSQMAKPGM---TSEQLIREALKSM 204 >gi|119472454|ref|ZP_01614553.1| Holliday junction DNA helicase motor protein [Alteromonadales bacterium TW-7] gi|119444891|gb|EAW26190.1| Holliday junction DNA helicase motor protein [Alteromonadales bacterium TW-7] Length = 205 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L K+G+ ++ +R+D L Sbjct: 1 MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGENTIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L GVG ++ + +LS ++A + V + +++ + ++PG+ K Sbjct: 61 FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + S V + + + A +A+SALV LGY QA Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPHSDALVANNAADDAVSALVALGYKLPQAQ 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV K + + +I+ +L+++ Sbjct: 181 KAVKSVSKPDMS---TEVLIKESLKSM 204 >gi|315122880|ref|YP_004063369.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496282|gb|ADR52881.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 208 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 166/208 (79%), Positives = 193/208 (92%), Gaps = 1/208 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKIKGNIEGLYEDYVLIDVQG+CYI+YCPIRTLSCLGKIGDFCTLFVETH+RQDQIRL Sbjct: 1 MIGKIKGNIEGLYEDYVLIDVQGICYIVYCPIRTLSCLGKIGDFCTLFVETHVRQDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLSDL+R+WF+LLQSVQGVGARVAMGVLSRIT ELV+SIILQN+K++AQIPGI K+ Sbjct: 61 FGFLSDLERKWFVLLQSVQGVGARVAMGVLSRITPVELVDSIILQNNKILAQIPGIGAKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179 ++RIM ELKGKA+SLSS ++++SC+N E++++ SM S AI+AISALVNLGYGQDQAT Sbjct: 121 SNRIMIELKGKAVSLSSSEKKEISCLNGEKSNVCESMSSSAIDAISALVNLGYGQDQATV 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AVVS+LKKEKNI DDSQIIRLALR ++C Sbjct: 181 AVVSILKKEKNITDDSQIIRLALREMTC 208 >gi|59711558|ref|YP_204334.1| Holliday junction DNA helicase motor protein [Vibrio fischeri ES114] gi|71649480|sp|Q5E6A0|RUVA_VIBF1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|59479659|gb|AAW85446.1| component of RuvABC resolvasome, regulatory subunit [Vibrio fischeri ES114] Length = 207 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 105/209 (50%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GN+ +LI+V G+ Y + P+ L ++G ++ +R+D L Sbjct: 1 MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + D + ++ I S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K + +IR +L+++ Sbjct: 181 ASKTVSQIAKPDM---TSEVLIRESLKSM 206 >gi|157830735|pdb|1CUK|A Chain A, Escherichia Coli Ruva Protein At Ph 4.9 And Room Temperature gi|581226|emb|CAA30119.1| unnamed protein product [Escherichia coli] Length = 203 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ LV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVARLVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIREALRA 201 >gi|152970923|ref|YP_001336032.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580323|ref|YP_002237747.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342] gi|238895438|ref|YP_002920173.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae NTUH-K2044] gi|262041978|ref|ZP_06015160.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934605|ref|YP_003438664.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22] gi|290508806|ref|ZP_06548177.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55] gi|330001163|ref|ZP_08303909.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3] gi|166230560|sp|A6TB31|RUVA_KLEP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698734|sp|B5XQ04|RUVA_KLEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150955772|gb|ABR77802.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569381|gb|ACI11157.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342] gi|238547755|dbj|BAH64106.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040676|gb|EEW41765.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288889314|gb|ADC57632.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22] gi|289778200|gb|EFD86197.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55] gi|328537774|gb|EGF63974.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3] Length = 203 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETAGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVASLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPAGPTADDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A+ +IR ALRA Sbjct: 181 VSKIARPD---ANSETLIREALRA 201 >gi|89075787|ref|ZP_01162175.1| Holliday junction DNA helicase motor protein [Photobacterium sp. SKA34] gi|89048519|gb|EAR54094.1| Holliday junction DNA helicase motor protein [Photobacterium sp. SKA34] Length = 207 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ L++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + D + N + A+SALV LGY Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPTLDTAASNAPIQDPSNQARAEDEAVSALVALGYKPQI 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V V + E + IIR ALR++ Sbjct: 181 AAKVVSQVTQPEMS---SEAIIRDALRSM 206 >gi|209695355|ref|YP_002263284.1| Holliday junction DNA helicase RuvA [Aliivibrio salmonicida LFI1238] gi|226698724|sp|B6EGJ3|RUVA_ALISL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|208009307|emb|CAQ79573.1| holliday junction ATP-dependent DNA helicase RuvA [Aliivibrio salmonicida LFI1238] Length = 206 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GN+ +LI+V G+ Y + P+ L IG +++ +R+D L Sbjct: 1 MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPPIGTEAIIYIHYVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTKKERALFREVIKANGVGPKLGLAILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K + + D + ++ I S S A+SAL++LGY QA Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPADTTSMDDASDLISSPQSAQDEAVSALISLGYKPVQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V V K + +IR +L+++ Sbjct: 181 SKMVSQVAKPDM---TSESLIRESLKSM 205 >gi|261211909|ref|ZP_05926196.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341] gi|260839259|gb|EEX65891.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341] Length = 204 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176 A R++ E+K + D+ + A I S+P + A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPIDSVPMMAQNAQEEAVSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V V K + ++IR AL+++ Sbjct: 178 ASKVVSQVAKAGMS---CEELIREALKSM 203 >gi|315126271|ref|YP_004068274.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp. SM9913] gi|315014785|gb|ADT68123.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp. SM9913] Length = 205 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L K+GD ++ +R+D L Sbjct: 1 MIGRLNGVLVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGDNAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L GVG ++ + +LS ++A + V + +++ + ++PG+ K Sbjct: 61 FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + S V + + + A +A+SALV LGY QA Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPASDATIANNAADDAVSALVALGYKLPQAQ 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV K + + +I+ +L+++ Sbjct: 181 KAVKSVSKPDMS---TEVLIKESLKSM 204 >gi|92113970|ref|YP_573898.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter salexigens DSM 3043] gi|91797060|gb|ABE59199.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter salexigens DSM 3043] Length = 206 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + + TL L G+ L +R+D L Sbjct: 3 MIGRLRGTLLEKQPPWIVVDVGGVGYELETSMTTLLALPGPGEEVQLHTHLAVREDAHLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +RQ F L V GVG ++A+ +LS + + ++ + K + ++PG+ K Sbjct: 63 YGFARGDERQLFRALIKVNGVGPKLALAILSGMDQEAFIRCVMEDDIKALTRLPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + + + + P +A SALV LGY +A+ Sbjct: 123 AERLVVEMRDRFPHWQLEQENGLHALELGASPTTAAPDPQADAESALVALGYKPTEASRM 182 Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206 L + +I+ AL R ++ Sbjct: 183 ----LSGLDDGLSTEGLIKAALARKLA 205 >gi|90580117|ref|ZP_01235925.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14] gi|90439002|gb|EAS64185.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14] Length = 207 Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ L++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + D + N + A+SALV LGY Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPALDTAASNAPIQDPSNQARAEDEAVSALVALGYKPQI 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V V + E + IIR ALR++ Sbjct: 181 AAKVVSQVTQPEMS---SEAIIRDALRSM 206 >gi|15641848|ref|NP_231480.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591344|ref|ZP_01678632.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80] gi|121730273|ref|ZP_01682649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52] gi|147675231|ref|YP_001217380.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395] gi|153824054|ref|ZP_01976721.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|227081975|ref|YP_002810526.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2] gi|229508057|ref|ZP_04397562.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286] gi|229511704|ref|ZP_04401183.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|229518843|ref|ZP_04408286.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9] gi|229607618|ref|YP_002878266.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236] gi|254848932|ref|ZP_05238282.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10] gi|255745394|ref|ZP_05419343.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101] gi|298498115|ref|ZP_07007922.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757] gi|20455267|sp|Q9KR01|RUVA_VIBCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|172047659|sp|A5F761|RUVA_VIBC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767399|sp|C3LNE9|RUVA_VIBCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|9656374|gb|AAF94994.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546808|gb|EAX56974.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80] gi|121627975|gb|EAX60536.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52] gi|126518426|gb|EAZ75649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|146317114|gb|ABQ21653.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395] gi|227009863|gb|ACP06075.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2] gi|227013744|gb|ACP09954.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395] gi|229343532|gb|EEO08507.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9] gi|229351669|gb|EEO16610.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|229355562|gb|EEO20483.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286] gi|229370273|gb|ACQ60696.1| holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236] gi|254844637|gb|EET23051.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10] gi|255737224|gb|EET92620.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101] gi|297542448|gb|EFH78498.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757] Length = 204 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176 A R++ E+K + D+ + A + S P + A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|91793239|ref|YP_562890.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans OS217] gi|122968746|sp|Q12N09|RUVA_SHEDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91715241|gb|ABE55167.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans OS217] Length = 203 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +++DV GV Y + P+ + L ++ TL+ +R+D L Sbjct: 1 MIGRLNGILVEKHAPEIVLDVGGVGYELQVPMTSFYELPELEQSATLYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVSCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K SL + + + + +AISALV+LGY QA+ A Sbjct: 121 AERLVVEMRDKLKSLLEASVGNEREFMLQTNYTAPAANAEEDAISALVSLGYKPPQASRA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K+ D +I+LAL+++ Sbjct: 181 VSKAYKEGM---DTETLIKLALKSM 202 >gi|318605500|emb|CBY26998.1| holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. palearctica Y11] Length = 205 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L IG +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + + ++ S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RLVSKIAK---PGADCEALIRDALRA 203 >gi|167552471|ref|ZP_02346224.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322886|gb|EDZ10725.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 203 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRIRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L+ + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLNGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIRDALRA 201 >gi|332161518|ref|YP_004298095.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665748|gb|ADZ42392.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860793|emb|CBX71080.1| holliday junction ATP-dependent DNA helicase ruvA [Yersinia enterocolitica W22703] Length = 205 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L IG +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + ++ + ++ S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNIGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RLVSKIAK---PGADCEALIRDALRA 203 >gi|77360814|ref|YP_340389.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas haloplanktis TAC125] gi|90135604|sp|Q3IIJ1|RUVA_PSEHT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76875725|emb|CAI86946.1| Holliday junction helicase, subunit A [Pseudoalteromonas haloplanktis TAC125] Length = 205 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L K+G+ ++ +R+D L Sbjct: 1 MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGESAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++R F L GVG ++ + +LS ++A + V + ++S + ++PG+ K Sbjct: 61 FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDSTSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + S V + + + A +A+SALV+LGY QA Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPFSDATIANNAADDAVSALVSLGYKLPQAQ 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV K + + +I+ +L+++ Sbjct: 181 KAVKSVSKPDMS---TEVLIKESLKSM 204 >gi|37199217|dbj|BAC95049.1| holliday junction resolvasome, DNA-binding subunit [Vibrio vulnificus YJ016] Length = 206 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L+ Sbjct: 4 IGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ + +LS +TA++ V S+ ++ + ++PG+ K A Sbjct: 64 GFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKTA 123 Query: 122 SRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + S + + + S S A+SAL+ LGY QA+ Sbjct: 124 ERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQASKV 183 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K + Q+IR AL+++ Sbjct: 184 VSQIAKPDM---TSEQLIREALKSM 205 >gi|322832435|ref|YP_004212462.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602] gi|321167636|gb|ADW73335.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602] Length = 204 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVHMPMTCFYELPELGQEAIIFTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEKEEITALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + + + A A++AL++LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNHTDITLPASASKAKESDAEGEAVAALISLGYKPPEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V K A+ +IR ALRA Sbjct: 181 MISKVAK---PGAESETLIREALRA 202 >gi|62180473|ref|YP_216890.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613551|ref|YP_001587516.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224583600|ref|YP_002637398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75482773|sp|Q57NA2|RUVA_SALCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045767|sp|A9MUX3|RUVA_SALPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767385|sp|C0Q2F4|RUVA_SALPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|62128106|gb|AAX65809.1| Holliday junction helicase subunit A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362915|gb|ABX66683.1| hypothetical protein SPAB_01271 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224468127|gb|ACN45957.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714948|gb|EFZ06519.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 203 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VNKIARPD---ASSETLIRDALRA 201 >gi|330445532|ref|ZP_08309184.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489723|dbj|GAA03681.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 207 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ L++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + D + N + A+SAL+ LGY Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPALDTAASNAPIQDPANQARAEDEAVSALIALGYKPQI 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V V + E + IIR ALR++ Sbjct: 181 AAKVVSQVTQPEMS---SEAIIRDALRSM 206 >gi|16760845|ref|NP_456462.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765237|ref|NP_460852.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141463|ref|NP_804805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413186|ref|YP_150261.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167994196|ref|ZP_02575288.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234044|ref|ZP_02659102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168241523|ref|ZP_02666455.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259832|ref|ZP_02681805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462574|ref|ZP_02696505.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820718|ref|ZP_02832718.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446097|ref|YP_002041160.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451798|ref|YP_002045948.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471309|ref|ZP_03077293.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197247981|ref|YP_002146128.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263523|ref|ZP_03163597.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362112|ref|YP_002141749.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242475|ref|YP_002215191.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389612|ref|ZP_03216223.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205352399|ref|YP_002226200.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856584|ref|YP_002243235.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213426405|ref|ZP_03359155.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580455|ref|ZP_03362281.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609154|ref|ZP_03368980.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213859991|ref|ZP_03385695.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912045|ref|ZP_04655882.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824023|ref|ZP_06543621.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039573|sp|P66747|RUVA_SALTI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042202|sp|P66746|RUVA_SALTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81361945|sp|Q5PN01|RUVA_SALPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698738|sp|B5F3J6|RUVA_SALA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698739|sp|B5FSN7|RUVA_SALDC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698740|sp|B5R1V8|RUVA_SALEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698741|sp|B5R8E2|RUVA_SALG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560123|sp|B4T7Z3|RUVA_SALHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560124|sp|B4SVE5|RUVA_SALNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560125|sp|B5BH60|RUVA_SALPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|25299990|pir||AC0743 Holliday junction DNA helicase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420431|gb|AAL20811.1| Holliday junction helicase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503142|emb|CAD05646.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhi] gi|29137090|gb|AAO68654.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127443|gb|AAV76949.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404760|gb|ACF64982.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410102|gb|ACF70321.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457673|gb|EDX46512.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634327|gb|EDX52679.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093589|emb|CAR59052.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211684|gb|ACH49081.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241778|gb|EDY24398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936991|gb|ACH74324.1| holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602057|gb|EDZ00603.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205272180|emb|CAR37038.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205327892|gb|EDZ14656.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331994|gb|EDZ18758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339435|gb|EDZ26199.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342743|gb|EDZ29507.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350710|gb|EDZ37341.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708387|emb|CAR32691.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247066|emb|CBG24885.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993877|gb|ACY88762.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158416|emb|CBW17923.1| Holliday junction DNA helicase ruvA [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912889|dbj|BAJ36863.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085488|emb|CBY95269.1| Holliday junction ATP-dependent DNA helicase ruvA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224538|gb|EFX49601.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130179|gb|ADX17609.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627451|gb|EGE33794.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988789|gb|AEF07772.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 203 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIRDALRA 201 >gi|254506186|ref|ZP_05118330.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16] gi|219551004|gb|EED27985.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16] Length = 223 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + +LI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 21 IGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + S + + + + S A+SAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSTPTATNSAEEEAVSALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++K + ++IR AL+++ Sbjct: 201 VAQIIKPGMS---SEELIRDALKSM 222 >gi|237809451|ref|YP_002893891.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187] gi|259495658|sp|C4LBN1|RUVA_TOLAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|237501712|gb|ACQ94305.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187] Length = 206 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DV GV Y + P+ L +G T+ +R+D L Sbjct: 1 MIGRLHGIIIEKSPPEILLDVGGVGYELQLPMTCFYELPAVGQEATIITHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ ++S ++A + V + ++ + ++PG+ K Sbjct: 61 YGFNTRQERTLFRELLKANGVGPKLALAIMSGMSANQFVSCVEREDVSSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL---SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K + + + + + A++AL+ LGY QA Sbjct: 121 AERLIVEMKDRLKGWISHDLFTPYTDAAPVDHEPSLAPADTVESEAVAALLALGYKPQQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V V+K E +IR ALR++ Sbjct: 181 SLVVSKVIKPEM---TVENVIREALRSM 205 >gi|29654859|ref|NP_820551.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 493] gi|153208743|ref|ZP_01946981.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat Q177'] gi|161831144|ref|YP_001597405.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331] gi|165918688|ref|ZP_02218774.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334] gi|212219280|ref|YP_002306067.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuK_Q154] gi|44888458|sp|Q83BE2|RUVA_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045751|sp|A9N9A2|RUVA_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698727|sp|B6J505|RUVA_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29542128|gb|AAO91065.1| holliday junction DNA helicase [Coxiella burnetii RSA 493] gi|120575775|gb|EAX32399.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat Q177'] gi|161763011|gb|ABX78653.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331] gi|165917623|gb|EDR36227.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334] gi|212013542|gb|ACJ20922.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154] Length = 200 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G I Y+L++V GV Y I P+ T L + + L+ +R+D L Sbjct: 1 MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+ F L V GVG ++A+ +LS I E V ++ QN + +IPG+ K Sbjct: 61 YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E K + + S +AISAL+ LGY +A A Sbjct: 121 AERLVIETKDGLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K + +IRLAL+ + Sbjct: 175 IDAIQKPD---LSAETLIRLALKQM 196 >gi|168238525|ref|ZP_02663583.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736016|ref|YP_002114930.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930984|ref|ZP_03221810.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|229560126|sp|B4TYR8|RUVA_SALSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194711518|gb|ACF90739.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288628|gb|EDY28003.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320028|gb|EDZ05233.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616895|gb|EFY13803.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618133|gb|EFY15025.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625804|gb|EFY22623.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626256|gb|EFY23066.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632670|gb|EFY29415.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639014|gb|EFY35707.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640454|gb|EFY37107.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644219|gb|EFY40764.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649542|gb|EFY45974.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655449|gb|EFY51757.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660228|gb|EFY56466.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662909|gb|EFY59116.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668094|gb|EFY64253.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674146|gb|EFY70240.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675500|gb|EFY71574.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683086|gb|EFY79102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686780|gb|EFY82758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195329|gb|EFZ80509.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199221|gb|EFZ84316.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204054|gb|EFZ89069.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207477|gb|EFZ92425.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210663|gb|EFZ95541.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217461|gb|EGA02180.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221952|gb|EGA06342.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224438|gb|EGA08726.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231483|gb|EGA15596.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235925|gb|EGA20004.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240495|gb|EGA24538.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245387|gb|EGA29387.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247807|gb|EGA31745.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253606|gb|EGA37434.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255035|gb|EGA38823.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260268|gb|EGA43889.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266859|gb|EGA50345.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269065|gb|EGA52521.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 203 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPGSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIRDALRA 201 >gi|328473203|gb|EGF44051.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 10329] Length = 204 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSASASSNSAEEEAVSALLALGYKPTQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K + + Q+IR AL+++ Sbjct: 181 VVSQIAKPDMS---SEQLIREALKSM 203 >gi|28897825|ref|NP_797430.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD 2210633] gi|260876984|ref|ZP_05889339.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AN-5034] gi|260901352|ref|ZP_05909747.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ4037] gi|31076902|sp|Q87QU8|RUVA_VIBPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28806038|dbj|BAC59314.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD 2210633] gi|308093747|gb|EFO43442.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AN-5034] gi|308109588|gb|EFO47128.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ4037] Length = 204 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K + + Q+IR AL+++ Sbjct: 181 VVSQIAKPDMS---SEQLIREALKSM 203 >gi|213649641|ref|ZP_03379694.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 203 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARPD---ASSETLIRDALRA 201 >gi|308049716|ref|YP_003913282.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica DSM 9799] gi|307631906|gb|ADN76208.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica DSM 9799] Length = 207 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + V+++ GV Y + P+ + L ++G +F +R+D L Sbjct: 1 MIGRLRGLLVEKAAPEVVLECGGVGYEVQLPMTSFYQLPELGSEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L GVG ++A+G+LS ++A + V+++ +N + ++PG+ K Sbjct: 61 YGFASKEERALFRELIKTNGVGPKMALGILSGMSAEQFVDAVQAENITGLTKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV----QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E++ + + + ++ N + + S P +AI+ALV LGY Sbjct: 121 AERLVVEMRDRLKNFGGPLLTPYADRLAGTNPTENTLVSAPDPEEDAIAALVALGYKAPA 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V V + Q+IR AL+A+ Sbjct: 181 ASKVVAKVAAPGMS---SEQLIRDALKAM 206 >gi|260779157|ref|ZP_05888049.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC BAA-450] gi|260605321|gb|EEX31616.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC BAA-450] Length = 224 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L+ Sbjct: 21 IGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 R++ E+K + + + A + AISAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPHTDAAPVDSAPQVDQANAEEEAISALLALGYKPTQASK 200 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V V + + ++IR AL+++ Sbjct: 201 VVSQVKTADMS---SEELIREALKSM 223 >gi|85059239|ref|YP_454941.1| Holliday junction DNA helicase motor protein [Sodalis glossinidius str. 'morsitans'] gi|123752615|sp|Q2NTI9|RUVA_SODGM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84779759|dbj|BAE74536.1| holliday junction DNA helicase RuvA [Sodalis glossinidius str. 'morsitans'] Length = 205 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLLETHGVGYEVFMPMTCFYALPETGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R F L V GVG ++A+ +LS ++A + + ++ Q + ++PG+ K Sbjct: 61 FGFIHKQERVLFRELIKVNGVGPKLALAILSGMSAQQFISAVERQEINALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS V Q + A++ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFVPQGAGEIPAAIDAPAMPADPEGEAVAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V +D +IR ALRA Sbjct: 181 RMVSKVASA---GSDCEMLIRDALRA 203 >gi|229515226|ref|ZP_04404686.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21] gi|229347931|gb|EEO12890.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21] Length = 204 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176 A R++ E+K + D+ + A + S P + A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPTTDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|183599000|ref|ZP_02960493.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827] gi|188021215|gb|EDU59255.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827] Length = 205 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + + S A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQHSDIKLPDVNVKVSSRADIEAEAATALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K + +D +IR ALRA Sbjct: 181 RMVSKVAKPD---SDCESLIRDALRA 203 >gi|238751590|ref|ZP_04613080.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380] gi|238710152|gb|EEQ02380.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380] Length = 204 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + + A S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASAAKTSDADIEAEAASALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 LVGKIAK---PGADCETLIRDALRA 202 >gi|153217384|ref|ZP_01951135.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587] gi|153830574|ref|ZP_01983241.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39] gi|229520306|ref|ZP_04409732.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80] gi|229523864|ref|ZP_04413269.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis VL426] gi|229529131|ref|ZP_04418521.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)] gi|124113602|gb|EAY32422.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587] gi|148873936|gb|EDL72071.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39] gi|229332905|gb|EEN98391.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)] gi|229337445|gb|EEO02462.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis VL426] gi|229342672|gb|EEO07664.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80] gi|327484398|gb|AEA78805.1| Holliday junction DNA helicase RuvA [Vibrio cholerae LMA3894-4] Length = 204 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176 A R++ E+K + D+ + A + S P + A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|297579365|ref|ZP_06941293.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385] gi|297536959|gb|EFH75792.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385] Length = 204 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGVGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V K + ++IR AL+++ Sbjct: 181 AVSQVAKAGMS---SEELIREALKSM 203 >gi|332534227|ref|ZP_08410072.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis ANT/505] gi|332036307|gb|EGI72778.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis ANT/505] Length = 205 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L KIG+ ++ +R+D L Sbjct: 1 MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKIGENAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++R F L GVG ++ + +LS ++A + V + ++S + ++PG+ K Sbjct: 61 FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAKQFVSCVNNEDSTSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + S V + + + A +A+SAL+ LGY QA Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPMSDATIANNAADDAVSALLALGYKLPQAQ 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV S+ K + + +IR +L+++ Sbjct: 181 KAVKSISKPDMS---TEVLIRESLKSM 204 >gi|262404190|ref|ZP_06080745.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586] gi|262349222|gb|EEY98360.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586] Length = 204 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----INAISALVNLGYGQDQ 176 A R++ E+K + D+ + A I S+P+ A AISAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPIDSVPALAQNAQDEAISALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV + K + ++IR AL+++ Sbjct: 178 ASKAVSQIAKAGMS---CEELIREALKSM 203 >gi|154707705|ref|YP_001423840.1| Holliday junction DNA helicase RuvA [Coxiella burnetii Dugway 5J108-111] gi|189045750|sp|A9KF41|RUVA_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154356991|gb|ABS78453.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111] Length = 200 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G I Y+L++V GV Y I P+ T L + L+ +R+D L Sbjct: 1 MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQKEILLYTHLIVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+ F L V GVG ++A+ +LS I E V ++ QN + +IPG+ K Sbjct: 61 YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E K + + S +AISAL+ LGY +A A Sbjct: 121 AERLVIETKDGLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K + +IRLAL+ + Sbjct: 175 IDAIQKPD---LSAETLIRLALKQM 196 >gi|253989949|ref|YP_003041305.1| Holliday junction DNA helicase RuvA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639070|emb|CAR67683.1| holliday junction atp-dependent dna helicase ruva (ec 3.6.1.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781399|emb|CAQ84562.1| holliday junction ATP-dependent DNA helicase RuvA [Photorhabdus asymbiotica] Length = 205 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L IG LF +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDIGQETVLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N S A +ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPATAKQTTSDADIEAEAAAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V+K AD +IR ALRA Sbjct: 181 RMVSKVVK---PGADCETLIREALRA 203 >gi|88861319|ref|ZP_01135950.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas tunicata D2] gi|88816698|gb|EAR26522.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas tunicata D2] Length = 205 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y ++ P+ L K G+ TL+ +R+D L Sbjct: 1 MIGRLSGILIEKQPPQILLDVAGVGYEVHLPMTCFYHLPKEGEKTTLYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L GVG ++ + +LS ++A + V+ + +++ + ++PG+ K Sbjct: 61 FGFNHKAERALFRELLKANGVGPKLGLAILSGMSADQFVQCVQHEDATSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + S V + Q S +AI+ALV LGY Q QA Sbjct: 121 AERLVLEMKDRLKDWGRDLFNPSSNELVLEMQNGPNVHDSAEDDAIAALVALGYKQAQAE 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V S+ K +IR AL+++ Sbjct: 181 KTVKSLRAPGK---TSEVLIREALKSM 204 >gi|258621408|ref|ZP_05716442.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573] gi|258626836|ref|ZP_05721643.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603] gi|262165955|ref|ZP_06033692.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223] gi|258580883|gb|EEW05825.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603] gi|258586796|gb|EEW11511.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573] gi|262025671|gb|EEY44339.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223] Length = 204 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----INAISALVNLGYGQDQ 176 A R++ E+K + D+ + A I S P+ A AISAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|262171190|ref|ZP_06038868.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451] gi|261892266|gb|EEY38252.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451] Length = 204 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVFCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----INAISALVNLGYGQDQ 176 A R++ E+K + D+ + A I S P+ A AISAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWG---AGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ AV V K + ++IR AL+++ Sbjct: 178 ASKAVSQVAKAGMS---SEELIREALKSM 203 >gi|220935403|ref|YP_002514302.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7] gi|254767396|sp|B8GUJ5|RUVA_THISH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219996713|gb|ACL73315.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7] Length = 201 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L+DVQGV Y I P+ T L + G TL H+R+D L Sbjct: 1 MIGRLRGELVSKQPPFLLLDVQGVGYEIEAPLSTFYDLPEPGGQVTLHTHLHVREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +R F L V GVGA++A+ +LS +TA+E ++ + + ++PGI K Sbjct: 61 YGFASESERALFRSLIKVTGVGAKMALAILSGMTASEFSRCVMDGDVASLVRLPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + SL + V K A P +A+SALV+LGY +A+ Sbjct: 121 AERLVVEMRDRLGSLPAAV---TLTGGKPAAAAARAPDPVSDAVSALVSLGYKPQEASRL 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +V E +IRLAL+A Sbjct: 178 ISAV---EGEAERSEDLIRLALKA 198 >gi|292488538|ref|YP_003531422.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia amylovora CFBP1430] gi|292899714|ref|YP_003539083.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946] gi|291199562|emb|CBJ46679.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946] gi|291553969|emb|CBA21014.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia amylovora CFBP1430] gi|312172681|emb|CBX80937.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia amylovora ATCC BAA-2158] Length = 204 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y + P+ L I +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPDIRQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + ++PG+ K Sbjct: 61 FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++AL LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMPKETGNDAESEAVAALTALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + K + AD +IR ALRA Sbjct: 181 MIGKIGKPD---ADCETLIREALRA 202 >gi|259908219|ref|YP_002648575.1| Holliday junction DNA helicase RuvA [Erwinia pyrifoliae Ep1/96] gi|224963841|emb|CAX55343.1| Holliday junction ATP-dependent DNA helicase [Erwinia pyrifoliae Ep1/96] gi|283478149|emb|CAY74065.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia pyrifoliae DSM 12163] gi|310767866|gb|ADP12816.1| Holliday junction DNA helicase RuvA [Erwinia sp. Ejp617] Length = 204 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y + P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPELQQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + ++PG+ K Sbjct: 61 FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMTKETGNDAESEAVAALIALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K K AD +IR ALRA Sbjct: 181 MI---VKTGKPDADCETLIREALRA 202 >gi|307826389|ref|ZP_07656591.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum SV96] gi|307732566|gb|EFO03441.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum SV96] Length = 203 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 4/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + ++++DV GV Y + P+ T L IG TL +R+D L Sbjct: 1 MIGFLRGKLAHKSPPFLMLDVNGVGYEVEAPMTTFYDLPAIGSEITLHTHLVVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ DR F L V GVG ++A+ +LS +A E I +++ + ++PG+ K Sbjct: 61 FGFSTEADRSMFRTLIKVNGVGPKLALTILSGQSAEEFHRCIHNNDTQALVRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + L+ + V I + + AISAL +LGY A Sbjct: 121 AERLVIEMRDRLPDLTDSFDSGGTSVAGVD-KIQPVNNPKQEAISALCSLGYKPLDAGKM 179 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + K+ IIRLAL+ Sbjct: 180 VQNISAEGKS---CEDIIRLALQ 199 >gi|238919502|ref|YP_002933017.1| Holliday junction DNA helicase RuvA [Edwardsiella ictaluri 93-146] gi|238869071|gb|ACR68782.1| holliday junction DNA helicase RuvA, putative [Edwardsiella ictaluri 93-146] Length = 204 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 4/203 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I V+++ GV Y + P+ L ++G +F +R+D L+ Sbjct: 4 IGRLRGTILEKQPPQVVLEAHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K A Sbjct: 64 GFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEVAALVKLPGVGKKTA 123 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ E+K + LS + + A + A++AL+ LGY +A+ V Sbjct: 124 ERLVVEMKDRFKGLSGDLFTP-ADAQLPSAQPQAQADAEGEAVAALIALGYKPQEASRLV 182 Query: 182 VSVLKKEKNIADDSQIIRLALRA 204 V AD +IR ALRA Sbjct: 183 NRVAVA---GADSETLIRDALRA 202 >gi|188533631|ref|YP_001907428.1| Holliday junction DNA helicase RuvA [Erwinia tasmaniensis Et1/99] gi|229560030|sp|B2VJ94|RUVA_ERWT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188028673|emb|CAO96535.1| Holliday junction ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99] Length = 204 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y + P+ L I +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPVVLIEASGVGYEVQMPMTCFYELPDIQHEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++AL LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMPKETANDAEGEAVAALTALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 +V V K + AD +IR ALRA Sbjct: 181 MIVKVGKPD---ADCETLIREALRA 202 >gi|90408541|ref|ZP_01216698.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3] gi|90310360|gb|EAS38488.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3] Length = 207 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+DV GV Y I P+ + L ++G ++ +R+D L Sbjct: 1 MIGRLRGVLLEKQPPEVLLDVSGVGYEIQLPMSSFYPLPEVGQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LL V GVG ++A+ +LS ++A E V I + + ++PG+ K Sbjct: 61 YGFADKHERAMFRLLIKVNGVGPKLALAILSGMSANEFVVCINNEAVSQLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + Q + + ++ S+ + AISAL+ LGY Sbjct: 121 AERLVVEMKDRLKNWVGTDLLSPQAESMDMQNGLSNTLSINTAKDEAISALLALGYKPAS 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A + +V + D +IR AL+++ Sbjct: 181 AEKCIRNVYQAGM---DCEDLIRSALKSM 206 >gi|330721244|gb|EGG99343.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC2047] Length = 197 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+IKG + + +DVQGV Y + P+ T L + +L+ +R+D L Sbjct: 1 MIGRIKGVLIEKSPPDICVDVQGVGYELQVPMNTFYRLPDVDHPVSLYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + + GVG ++ + +LS I A++ V + + + ++PGI K Sbjct: 61 YGFYEARERELFRAVIKINGVGPKLGLAILSGIEASDFVRVVHNNDVAALTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + +N A A+SAL+ LGY A A Sbjct: 121 AERLVIEMRDKLKDWPEAPGDLQASLNSAAA------DGTDEAVSALLALGYKPKDAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S+ + + ++IR AL++++ Sbjct: 175 IKSIAVEGMS---SQELIRQALKSMA 197 >gi|153839740|ref|ZP_01992407.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ3810] gi|149746738|gb|EDM57726.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ3810] Length = 204 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 104/206 (50%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI++ G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEINGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K + + Q+IR AL+++ Sbjct: 181 VVSQIAKPDMS---SEQLIREALKSM 203 >gi|300723091|ref|YP_003712389.1| Holliday junction helicase subunit A [Xenorhabdus nematophila ATCC 19061] gi|297629606|emb|CBJ90209.1| Holliday junction helicase, subunit A [Xenorhabdus nematophila ATCC 19061] Length = 205 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L +IG LF + +R+D L Sbjct: 1 MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQQAILFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N A S A +ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPAAAKQTNSDADIEAEAAAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V+K AD +IR ALRA Sbjct: 181 RMVSKVVK---PGADCETLIREALRA 203 >gi|109899252|ref|YP_662507.1| Holliday junction DNA helicase RuvA [Pseudoalteromonas atlantica T6c] gi|109701533|gb|ABG41453.1| Holliday junction DNA helicase subunit RuvA [Pseudoalteromonas atlantica T6c] Length = 209 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VLIDV GV Y I P+ + L ++G +++ +R+D L Sbjct: 3 MIGRIRGTVVEKQPPEVLIDVAGVGYEIQIPMTSFYQLPEVGAEASVYTHFVVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L GVG ++A+ +LS ++ ++ + ++ + ++PG+ K Sbjct: 63 FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQHFMQCVAHEDITALVKLPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E++ + LS + N + + A+SAL+ LGY Q Sbjct: 123 AERLVIEMRDRFKKLSLEQSASDDFALQGNNSIENTFVTSSDAKEEALSALIALGYKAPQ 182 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + SV K+ ++IR ALRA+ Sbjct: 183 ASKVINSVYVKD---ITSEELIREALRAM 208 >gi|108807436|ref|YP_651352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Antiqua] gi|108811697|ref|YP_647464.1| Holliday junction DNA helicase RuvA [Yersinia pestis Nepal516] gi|145598360|ref|YP_001162436.1| Holliday junction DNA helicase RuvA [Yersinia pestis Pestoides F] gi|21959100|gb|AAM85813.1|AE013828_4 Holliday junction helicase subunit B [Yersinia pestis KIM 10] gi|45436564|gb|AAS62118.1| Holliday junction helicase subunit B [Yersinia pestis biovar Microtus str. 91001] gi|51589648|emb|CAH21278.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP 32953] gi|108775345|gb|ABG17864.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis Nepal516] gi|108779349|gb|ABG13407.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis Antiqua] gi|145210056|gb|ABP39463.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis Pestoides F] Length = 226 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 4/204 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I VL++ GV Y + P+ L ++G +F + +R+D L+ Sbjct: 24 IGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLLY 83 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A Sbjct: 84 GFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKTA 143 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + L+ + + ++ + S A SALV LGY +A+ Sbjct: 144 ERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASRL 203 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 204 VSKIAK---PGADCETLIRDALRA 224 >gi|254292161|ref|ZP_04962932.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226] gi|150421924|gb|EDN13900.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226] Length = 204 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 105/209 (50%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----SFAINAISALVNLGYGQDQ 176 A R++ E+K + D+ + A + S P + A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWG---AADLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQ 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ A+ V K + ++IR AL+++ Sbjct: 178 ASKALSQVAKAGMS---SEELIREALKSM 203 >gi|261493369|ref|ZP_05989895.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496635|ref|ZP_05993015.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307838|gb|EEY09161.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311013|gb|EEY12190.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 201 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ +I + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ V+ EQ + P A A+ AL+ LGY A Sbjct: 121 AERLLVELKGKFKRMAQ--SDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V K+ A Q+IR AL+ Sbjct: 179 IKKV---NKSGATSEQLIREALK 198 >gi|332305758|ref|YP_004433609.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173087|gb|AEE22341.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 207 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VLIDV GV Y I P+ + L ++G+ +++ +R+D L Sbjct: 1 MIGRIRGTLIEKQPPEVLIDVSGVGYEIQIPMTSFYQLPEVGEQASVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L GVG ++A+ +LS ++ ++ + ++ + ++PG+ K Sbjct: 61 FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQNFMQCVAHEDITALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E++ + LS + N + + A+SAL+ LGY Q Sbjct: 121 AERLVIEMRDRFKKLSLEQSAGDDFTLQGSNGIENTFVTSTDAKEEALSALIALGYKAQQ 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + SV K+ +IR ALRA+ Sbjct: 181 ASKVINSVYVKD---ITSEALIREALRAM 206 >gi|254360614|ref|ZP_04976763.1| crossover junction endonuclease RuvA [Mannheimia haemolytica PHL213] gi|153091154|gb|EDN73159.1| crossover junction endonuclease RuvA [Mannheimia haemolytica PHL213] Length = 201 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ +I + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ V+ EQ + P A A+ AL+ LGY A Sbjct: 121 AERLLVELKGKFKGMAQ--SDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V K+ A Q+IR AL+ Sbjct: 179 IKKV---NKSGATSEQLIREALK 198 >gi|126174263|ref|YP_001050412.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155] gi|153000824|ref|YP_001366505.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185] gi|160875532|ref|YP_001554848.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195] gi|217973219|ref|YP_002357970.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223] gi|304408864|ref|ZP_07390485.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183] gi|307302867|ref|ZP_07582622.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175] gi|166200260|sp|A3D480|RUVA_SHEB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200261|sp|A6WNQ3|RUVA_SHEB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045769|sp|A9L3H8|RUVA_SHEB9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767386|sp|B8EA74|RUVA_SHEB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|125997468|gb|ABN61543.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155] gi|151365442|gb|ABS08442.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185] gi|160861054|gb|ABX49588.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195] gi|217498354|gb|ACK46547.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223] gi|304352685|gb|EFM17082.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183] gi|306913227|gb|EFN43649.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175] gi|315267720|gb|ADT94573.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS678] Length = 205 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LIDV GV Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGVLVEKQAPEILIDVNGVGYELQMPLTSFYELPEVNHETMVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K+ D +I+ AL+++ Sbjct: 181 KSVSAAYKEGM---DSETLIKAALKSM 204 >gi|119944489|ref|YP_942169.1| Holliday junction DNA helicase RuvA [Psychromonas ingrahamii 37] gi|166230588|sp|A1SSV5|RUVA_PSYIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119863093|gb|ABM02570.1| Holliday junction DNA helicase subunit RuvA [Psychromonas ingrahamii 37] Length = 207 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ + L G ++ +R+D L Sbjct: 1 MIGRLRGVLLEKQPPEVLIEVSGIGYEVQLPMSSFYALPDAGQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V+ I + ++PG+ K Sbjct: 61 YGFADKHERAMFRELIKVNGVGPKLALAILSGMSANQFVQCIHNDAVTTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + + D E + + + AISALV+LGY Sbjct: 121 AERLVVEMKDRLKNWTGADLLTPASDKMVFENEFTNSAASGNAKDEAISALVSLGYKPVL 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A A+ V + D +IR +L+++ Sbjct: 181 AEKAIQQVYVEGM---DCEALIRSSLKSM 206 >gi|127513004|ref|YP_001094201.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4] gi|166200262|sp|A3QEP4|RUVA_SHELP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126638299|gb|ABO23942.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4] Length = 205 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGLLVEKQAPEVLIETGGVGYEVQMPLTSFYELPELNQEAVIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA E V+ + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVKCVEHDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + + + +AISAL+ LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASHGNEREFVLQSNYTPAPVVNTAEEDAISALLALGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV ++ D +I+ +L+++ Sbjct: 181 KAVSSVFEEGM---DSETLIKASLKSM 204 >gi|308125357|ref|ZP_05774780.2| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030] gi|308113231|gb|EFO50771.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030] Length = 223 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L+ Sbjct: 21 IGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K + + Q+IR AL+++ Sbjct: 201 VSQIAKPDMS---SEQLIREALKSM 222 >gi|312882586|ref|ZP_07742326.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369746|gb|EFP97258.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC BAA-2122] Length = 205 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 106/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILVEKQPPELLIEVNGLGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS--SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + S + ++ S+ + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPYTDAAVADKLPESSVSNAEEEAVSALLALGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+ + + ++IR AL+++ Sbjct: 181 KVVSQVMVEGMS---SEKLIREALKSM 204 >gi|117618993|ref|YP_858104.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166229627|sp|A0KPA3|RUVA_AERHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117560400|gb|ABK37348.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 204 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V GV Y + P+ L +IG T+ +R+D L Sbjct: 1 MIGRLRGVVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS +TAT+ V S+ + + ++PG+ K Sbjct: 61 YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + S + + P + A SALV LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWVSHDLFSPAEITLPARESALRAPDSSEEAASALVALGYKPQQASQ 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V V + IIR ALR++ Sbjct: 181 IVSKVAA---DGMSVEDIIREALRSL 203 >gi|192360858|ref|YP_001981526.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107] gi|229560014|sp|B3PB58|RUVA_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190687023|gb|ACE84701.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107] Length = 205 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + Y+L+DV GV Y + P+ T L +G L + ++ +L Sbjct: 1 MIGRLKGILIEKQPPYLLLDVNGVGYELQAPMTTFYRLPSLGHEVVLHTHLSITENLHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L V GVG ++A+ +LS + + ++ + N K + ++PGI K Sbjct: 61 FGFAEQRDRSLFRTLIKVNGVGPKLAVAILSGMESDDIARCVRDNNIKALTRVPGIGQKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + + Q + E I S A SAL+ LGY A Sbjct: 121 AERLVIELRDRLKNWD--LPQGDMLAHGEIQAIASDNDIYAEAESALIALGYKPVDAAKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V S K++ A ++IR+ALR+++ Sbjct: 179 VASAAKQKPE-ARSEELIRIALRSLA 203 >gi|120554625|ref|YP_958976.1| Holliday junction DNA helicase RuvA [Marinobacter aquaeolei VT8] gi|166230564|sp|A1U1C0|RUVA_MARAV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120324474|gb|ABM18789.1| Holliday junction DNA helicase subunit RuvA [Marinobacter aquaeolei VT8] Length = 209 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + L++ G+ Y I P T L + G TL +R+D L Sbjct: 1 MIGRIRGMLIEKSPGQALVECSGLGYEIDIPYTTFFHLPETGQEVTLHTHFAVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S LDR F LL V GVG ++A+G+LS + A + + + +++ + ++PG+ K Sbjct: 61 YGFASRLDRNLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVEARDANSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+ + L Q D+ + P A +AL+ LGY +A Sbjct: 121 AERLLIEMADRIGQLEGQFVPSQPDVPTGAGAATASQAGPDPREEAEAALIALGYKPQEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + N +IRLAL+ + Sbjct: 181 AKAISKVAGPDMN---SETLIRLALKNM 205 >gi|90411664|ref|ZP_01219674.1| Holliday junction DNA helicase motor protein [Photobacterium profundum 3TCK] gi|90327554|gb|EAS43907.1| Holliday junction DNA helicase motor protein [Photobacterium profundum 3TCK] Length = 206 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I VLIDV G+ Y + P+ L ++G + +R+D L Sbjct: 1 MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ ++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E++ + + + + S A+SAL+ LGY QA Sbjct: 121 AERLVIEMRDRLKGWGEGDLFTPASDAAASNAEVQQYSSARAEDEAVSALIALGYKAPQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+K E + IIR ALR++ Sbjct: 181 AKVVSQVVKPEMS---SENIIREALRSM 205 >gi|325274574|ref|ZP_08140632.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51] gi|324100301|gb|EGB98089.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51] Length = 205 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 112/205 (54%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + V+ S S +AISALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWETSPAM-FTLVSDGPLPAASASSAEADAISALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+K ++IR +L+ + Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202 >gi|120598878|ref|YP_963452.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1] gi|146293036|ref|YP_001183460.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32] gi|166200263|sp|A4Y6S8|RUVA_SHEPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200265|sp|A1RJQ3|RUVA_SHESW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120558971|gb|ABM24898.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1] gi|145564726|gb|ABP75661.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32] gi|319426434|gb|ADV54508.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens 200] Length = 205 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 111/207 (53%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y + P+ + L +I ++ +R+D L Sbjct: 1 MIGRLRGVLVEKQAPEILMDVNGVGYELQMPLTSFYELPEIDHETVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPTPTVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K+ D +I+ AL+++ Sbjct: 181 KSVSAAYKEGM---DSETLIKAALKSM 204 >gi|114563352|ref|YP_750865.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB 400] gi|122299598|sp|Q081N8|RUVA_SHEFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114334645|gb|ABI72027.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB 400] Length = 205 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + V++DV GV Y + P+ + L + LF +R+D L Sbjct: 1 MIGRLSGILVEKQAPEVVLDVNGVGYELQVPMTSFYELPALNQAAMLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVSCVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLVIEMRDKLKSLLEASAGSEREFMLQSNYTPAAAVDSAEEDAISALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K+ + +I+ AL+++ Sbjct: 181 KSVSAAFKEGMS---SETLIKAALKSM 204 >gi|332290325|ref|YP_004421177.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179] gi|330433221|gb|AEC18280.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179] Length = 202 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + +L++V G+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGHLRGILLEKSPPEILLEVNGIGYEVLLPMTSFYHLPEVNMEAAIYTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ +E +I + + +IPG+ K Sbjct: 61 FGFYHKQDRTLFRELIKTNGVGPKLALAILSAMSVSEFSYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + S +AISALV LGY +A Sbjct: 121 AERLIVELKGKFKAYQHDDFF-IEQTTTQSGIDTEKVSATDDAISALVALGYKPAEAEKM 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V K E D Q+IR AL++ Sbjct: 180 VKRVAKPE---WDSEQLIREALKS 200 >gi|110833613|ref|YP_692472.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2] gi|110646724|emb|CAL16200.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2] Length = 201 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y + P+ L + G TL +R+D L Sbjct: 2 MIGQLRGTLLEKRPPVLLLDVNGVGYEVEAPMTVFYDLPEAGAELTLHTHFVVREDAQLL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L V GVG ++A+ +LS I A L I Q++ + ++PGI K Sbjct: 62 YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + V+ +Q +AI+AL LGY A A Sbjct: 122 AERLVIEMRDRLDKIDGGPVSVPGRVDTDQPD-----DARSDAIAALEALGYRNKDAAVA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +E Q+IR AL++++ Sbjct: 177 VGKAADQEG--MSSEQLIRKALKSLA 200 >gi|167623851|ref|YP_001674145.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis HAW-EB4] gi|189045770|sp|B0TSA6|RUVA_SHEHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167353873|gb|ABZ76486.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis HAW-EB4] Length = 205 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VL+DV GV Y I P+ + L ++G ++ +R+D L Sbjct: 1 MIGRIRGLLIEKQAPEVLVDVSGVGYEIQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL GVG ++ + +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFISKQERSLFRLLIKANGVGPKLGLTILSGMTAREFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + ++ + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPEAVNTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV + +I+ AL+++ Sbjct: 181 KAVSSVY---TDGMSSETLIKSALKSM 204 >gi|37526027|ref|NP_929371.1| Holliday junction DNA helicase motor protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|44888380|sp|Q7N548|RUVA_PHOLL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|36785457|emb|CAE14404.1| Holliday junction DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 205 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L G LF +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDAGQEAVLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEREAIVSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N S A +ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPATAKQTTSDADSEAEAAAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RMVSKIAK---PGADCETLIREALRA 203 >gi|332993889|gb|AEF03944.1| Holliday junction DNA helicase motor protein [Alteromonas sp. SN2] Length = 206 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+D GV Y I+ P+ + L +G+ ++ +R+D L Sbjct: 1 MIGRIRGTLAEKQPPEILVDANGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R F L GVG ++ + +LS ++A + + ++ + + +PGI K Sbjct: 61 FGFADKMERGLFRELIKANGVGPKLGLTILSGMSAGQFLSAVQNADVSALVSLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK + V + + + + + +A SALV LGY QA Sbjct: 121 AERLVVELKDRLAKFGKVQSIAIPPPSGDLLNTNTLVEVNDTREDAQSALVALGYKPAQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + + SV K+ +IR AL+A Sbjct: 181 SKLIDSVYKEGME---SESLIREALKA 204 >gi|330828297|ref|YP_004391249.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas veronii B565] gi|328803433|gb|AEB48632.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas veronii B565] Length = 229 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VL++V GV Y + P+ L +IG T+ +R+D L+ Sbjct: 27 IGRLRGIVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLLY 86 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R F L GVG ++A+ +LS +TAT+ V S+ + + ++PG+ K A Sbjct: 87 GFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKTA 146 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + S + V + P A SALV LGY QA+ Sbjct: 147 ERLVVEMKDRLKGWVSHDLFSPAMVTLPASEPELRAPDVTEEAASALVALGYKPQQASQI 206 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K+ + IIR +LR++ Sbjct: 207 VSKIAKEGMS---VEDIIRESLRSL 228 >gi|260598336|ref|YP_003210907.1| Holliday junction DNA helicase RuvA [Cronobacter turicensis z3032] gi|260217513|emb|CBA31691.1| Holliday junction ATP-dependent DNA helicase ruvA [Cronobacter turicensis z3032] Length = 203 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y I+ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLEAGGVGYEIHMPMTCFYELPETGKEAVVFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + ++ A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + + A +IR ALRA Sbjct: 181 VSKVAQPD---ASSETLIREALRA 201 >gi|262276112|ref|ZP_06053921.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886] gi|262219920|gb|EEY71236.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886] Length = 209 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 9/211 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++V GV Y + P+ L ++G+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEILLEVNGVGYEVSMPMSCFYELPEVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R F + GVG ++ + +LS +TAT+ V+S+ ++ + +IPG+ K Sbjct: 61 YGFNTTVERALFREVIKANGVGPKLGLAILSGMTATQFVDSVEREDVSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAIS------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E++ + + + + N + + + AISAL+ LGY Sbjct: 121 AERLVIEMRDRLKNWHAFDLFTPHADAAVRRANGTETVVAASTDPKDEAISALIALGYKA 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA V V + IIR ALR++ Sbjct: 181 AQAEKVVKQVA---VDGMKSEAIIRDALRSM 208 >gi|145297804|ref|YP_001140645.1| Holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp. salmonicida A449] gi|166229628|sp|A4SJ25|RUVA_AERS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|142850576|gb|ABO88897.1| holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp. salmonicida A449] Length = 204 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG T+ +R+D L Sbjct: 1 MIGRLRGVVIEKQPPEVLLEVGGLGYEVQMPMSCFYDLPEIGKEVTIHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS +TAT+ V S+ + + ++PG+ K Sbjct: 61 YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + S + + + P + A SALV LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWVSHDLFSPAEISLPARESVLRAPDSSEEAASALVALGYKPQQASQ 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K+ + IIR +LR++ Sbjct: 181 IVSKIAKEGMS---VEDIIRESLRSL 203 >gi|284007614|emb|CBA73228.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus nasoniae] Length = 204 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL+++ GV Y ++ P+ L +IG L + +R+D L Sbjct: 1 MIGRLRGTILEKQPPIVLLELNGVGYEVHMPMTCFYELPEIGQEVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAYQFVSAIEQEAIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L + +Q + A + A+SAL++LGY A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFKQSAIDLPGSSAAKQNSHDIEAEAVSALISLGYKPQDASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V + +IR ALRA Sbjct: 181 MIGRVA---NGATNCEALIREALRA 202 >gi|254516709|ref|ZP_05128768.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3] gi|219675132|gb|EED31499.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3] Length = 203 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +L+DV GV Y I P+ TL L +GD TL +R+D L Sbjct: 1 MIGRISGTLLHKHPPEILVDVAGVGYEIQVPMTTLFQLPALGDAVTLLTHHAVREDAQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ DR+ F L V GVG ++A+ +LS + + ++ + + +PG+ K Sbjct: 61 YGFVSERDRELFRHLIKVSGVGPKLALTILSGMDSDSFARAVQADDLTALVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + ++ A +A ALV+LGY +A Sbjct: 121 AERLLIEMRDRLSGW----LDKITDTGGGMARPIPASDKLSDAEEALVSLGYKPAEAARL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V +I D ++IRLALR+ Sbjct: 177 VARV--DNDDITDSEELIRLALRS 198 >gi|156933560|ref|YP_001437476.1| Holliday junction DNA helicase RuvA [Cronobacter sakazakii ATCC BAA-894] gi|166230549|sp|A7MEA2|RUVA_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|156531814|gb|ABU76640.1| hypothetical protein ESA_01380 [Cronobacter sakazakii ATCC BAA-894] Length = 203 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLEAGGVGYEVHMPMTCFYELPETGKEAVVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + ++ A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + + A +IR ALRA Sbjct: 181 VSKVAQAD---ASSETLIREALRA 201 >gi|301155728|emb|CBW15196.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus parainfluenzae T3T1] Length = 203 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + +L+DVQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDQFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + S + + S A AI+AL+ LGY A Sbjct: 121 AERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSADEAIAALIALGYKPTDAEKM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V K + Q+IR AL+A Sbjct: 181 VKKVAKAD---LSSEQLIREALKA 201 >gi|260912903|ref|ZP_05919388.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis ATCC 43325] gi|260632893|gb|EEX51059.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis ATCC 43325] Length = 204 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQGV Y + P+ + L +IG +LF +R+D L Sbjct: 1 MIGHLTGRLVEKQPPEILLDVQGVGYELLLPMTSFYNLPEIGQKTSLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E V +I + + +IPG+ K Sbjct: 61 FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK ++ + + + + S + A+SALV LGY +A Sbjct: 121 AERLLVELKGKFKDVTQGDFFIESKHLPDVKVSMQSSDAPNDEAVSALVALGYKPVEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K + Q+IR AL+A Sbjct: 181 MVKRITKPD---LSSEQLIREALKA 202 >gi|157962184|ref|YP_001502218.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC 700345] gi|189045771|sp|A8H546|RUVA_SHEPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157847184|gb|ABV87683.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC 700345] Length = 205 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VL+DV GV Y + P+ + L ++G ++ +R+D L Sbjct: 1 MIGRIRGILIEKQAPEVLVDVSGVGYELQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL GVG ++ + +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFVSKQERSLFRLLIKANGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYKASEVVNTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV + +I+ AL+++ Sbjct: 181 KAVSSVY---TDGMSSETLIKSALKSM 204 >gi|260467057|ref|ZP_05813237.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum WSM2075] gi|259029166|gb|EEW30462.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 134/207 (64%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ L+D+ GV Y+ YC RTL+ L G+ LF+ET++R+D +RL Sbjct: 1 MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R+WF LL +V GVGA+VA+ +LS +T +L +I L++ ++++ PG+ K Sbjct: 61 YGFQSQLEREWFRLLMNNVPGVGAKVALAILSTLTPADLANAIALRDIAMVSRAPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + K++ P+ +A+SALVNLGY +D A Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGL--KQELGDGVAPAPITDAVSALVNLGYSRDTAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD S++IR L+ ++ Sbjct: 179 AVSAALKTAGEDADASKLIRFGLKELA 205 >gi|34499678|ref|NP_903893.1| Holliday junction DNA helicase RuvA [Chromobacterium violaceum ATCC 12472] gi|44888390|sp|Q7NQB7|RUVA_CHRVO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34105529|gb|AAQ61883.1| holliday junction DNA helicase [Chromobacterium violaceum ATCC 12472] Length = 197 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + V++DV GV Y + P+ T L +G CTLF +R+D L Sbjct: 1 MIGRLSGKLIEKLPPQVVVDVNGVGYEVDVPMTTFYQLPALGQPCTLFTHLAVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +RQ F L V G+GA++A+ +LS +TA EL ++ ++ K ++ +PGI K Sbjct: 61 YGFASKEERQTFRQLIKVTGIGAKIALAILSGMTADELAIAVASEDIKRLSAVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + P + ++AL+ LGY + +A A Sbjct: 121 AERLVLELRGKL-------ATGGNLTVPGGLPFAATPDEKSDIVNALLALGYNEKEAAAA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 K S+ +RLAL+++ Sbjct: 174 ----TKSLPADVTVSEGVRLALKSL 194 >gi|304413290|ref|ZP_07394763.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus Regiella insecticola LSR1] gi|304284133|gb|EFL92526.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus Regiella insecticola LSR1] Length = 202 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y I PI L + G +F + +R++ L Sbjct: 1 MIGRLRGIILEKQPPQVLLETHGVGYEIQLPISCFYQLPEAGQEAIIFTQFVVREEAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAPQFVHAVEQEEISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L+ + + S A + + + A+SAL+ LGY +A+ Sbjct: 121 AERLVVEMKDRIKGLNGDLFTN-STAAPLSASLLTTVNNEAEAVSALITLGYKPQEASRL 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + E D +IR ALRA Sbjct: 180 INKIATAEM---DCETLIREALRA 200 >gi|161936318|ref|YP_129329.2| Holliday junction DNA helicase RuvA [Photobacterium profundum SS9] gi|90135510|sp|Q6LT49|RUVA_PHOPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 206 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I VLIDV G+ Y + P+ L ++G + +R+D L Sbjct: 1 MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ ++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E++ + + + + S A+SAL+ LGY QA Sbjct: 121 AERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARAEDEAVSALIALGYKALQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+K E + IIR ALR++ Sbjct: 181 AKVVSQVVKPEMS---SENIIREALRSM 205 >gi|239995979|ref|ZP_04716503.1| Holliday junction DNA helicase motor protein [Alteromonas macleodii ATCC 27126] Length = 206 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+DV GV Y I+ P+ + L +G+ ++ +R+D L Sbjct: 1 MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R F L GVG ++ + +LS ++A++ + S+ ++ + +PGI K Sbjct: 61 FGFADKMERGLFRELIKANGVGPKLGLAILSGMSASQFLASVQNEDVSALVSLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK + + + + I ++ A SAL+ LGY QA Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSTNTIVAVNDAREEAQSALIALGYKPAQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V SV K+ +IR +L+A Sbjct: 181 SKLVDSVYKEGME---SEALIRESLKA 204 >gi|326795234|ref|YP_004313054.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas mediterranea MMB-1] gi|326545998|gb|ADZ91218.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas mediterranea MMB-1] Length = 199 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + +L+DV G+ Y +Y + T+ L IG+ L +++D L Sbjct: 1 MISRIVGTLIEKMPPELLVDVNGIGYEVYASMTTIYDLASIGETVVLHTHLQVKEDSHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F +L V G+G ++A+ +LS ++ +EL+E++ N + +IPG+ K Sbjct: 61 YGFHSKDERAVFRVLIKVNGIGPKMALAILSSMSTSELIENVQESNVDALVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L +QD+ K + + P A +ALV LGY +A+ A Sbjct: 121 AERLIIELRDK---LGQAAKQDLFSTPKVLKQVQADP--RQEAEAALVALGYKPQEASKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + + +D II+ AL+ + Sbjct: 176 VAKVPQ---DGSDSETIIKAALKGM 197 >gi|152979457|ref|YP_001345086.1| Holliday junction DNA helicase motor protein [Actinobacillus succinogenes 130Z] gi|171704337|sp|A6VQA4|RUVA_ACTSZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150841180|gb|ABR75151.1| Holliday junction DNA helicase RuvA [Actinobacillus succinogenes 130Z] Length = 204 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DVQG+ Y + P+ + L G CT+F +R+D L Sbjct: 1 MIGRLQGKLIEKQPPEILLDVQGIGYELLLPMTSFYNLPDTGQECTVFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFSTKTDRTLFRELIKTNGVGPKLALAILSAMSVHEFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK L + + + A++ALV LGY +A Sbjct: 121 AERLLVELKGKFKGLRQPDFFVESKHITVPDIVSAEKETPNDEAVAALVALGYKPPEAAK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V + Q+IR AL+A Sbjct: 181 MVKKVANGD---LTSEQLIREALKA 202 >gi|145632564|ref|ZP_01788298.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 3655] gi|229845014|ref|ZP_04465151.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 6P18H1] gi|144986759|gb|EDJ93311.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 3655] gi|229812148|gb|EEP47840.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 6P18H1] Length = 204 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S+ + + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPSVPSIEPSVENSSDEAISALIALGYKPSEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V V K E Q+IR AL+ Sbjct: 181 MVKRVAKPE---LTSEQVIREALK 201 >gi|325579043|ref|ZP_08148999.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus parainfluenzae ATCC 33392] gi|325159278|gb|EGC71412.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus parainfluenzae ATCC 33392] Length = 203 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DVQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLTGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + S + + S A A++ALV LGY A Sbjct: 121 AERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSADEAVAALVALGYKPTDAEKM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V K + Q+IR AL+ Sbjct: 181 VKKVAKAD---LTSEQLIREALK 200 >gi|229470526|sp|B4RTT9|RUVA_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 206 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+DV GV Y I+ P+ + L +G+ ++ +R+D L Sbjct: 1 MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R F L GVG ++ + +LS ++A + + S+ ++ +A +PGI K Sbjct: 61 FGFADKMERGLFRELIKANGVGPKLGLAILSGMSAGQFLASVQNEDVSALASLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK + + + + I + A SAL+ LGY QA Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSPNTIVEVNDAREEAQSALIALGYKPAQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V SV + +IR AL+A Sbjct: 181 SKLVESVYSEGME---SEALIREALKA 204 >gi|238788520|ref|ZP_04632313.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC 33641] gi|238723433|gb|EEQ15080.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC 33641] Length = 194 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 3/194 (1%) Query: 11 GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70 VL++ GV Y + P+ L +G +F + +R+D L+GF +R Sbjct: 2 EKQPPLVLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERA 61 Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K Sbjct: 62 LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190 + L+ + + + A A+SALV LGY +A+ V + K Sbjct: 122 RFKGLNGDLFNNTGDIQLPSASQTPDADIEAEAVSALVALGYKPQEASRLVSKIAK---P 178 Query: 191 IADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 179 GADCETLIRDALRA 192 >gi|46912737|emb|CAG19527.1| Putative holliday junction DNA helicase RuvA [Photobacterium profundum SS9] Length = 228 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 6/207 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG++ G I VLIDV G+ Y + P+ L ++G + +R+D L+ Sbjct: 24 IGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLLY 83 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R+ F + GVG ++ + +LS +TA++ V S+ ++ + +IPG+ K A Sbjct: 84 GFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKTA 143 Query: 122 SRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 R++ E++ + + + + S A+SAL+ LGY QA Sbjct: 144 ERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARAEDEAVSALIALGYKALQAA 203 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+K E + IIR ALR++ Sbjct: 204 KVVSQVVKPEMS---SENIIREALRSM 227 >gi|302671008|ref|YP_003830968.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus B316] gi|302395481|gb|ADL34386.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus B316] Length = 207 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E L + +IDV G+ Y + T+ + IG+ L+ T++++D L Sbjct: 1 MIAYVNGILENLEDGNAVIDVNGIGYNVNISGSTMDRMPGIGEMVKLYTYTNVKEDAFTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS + F LL +V G+G + + +LS +T +L +I+ +SK +++ PGI K Sbjct: 61 FGFLSRDELNLFKLLITVNGIGPKGGLAILSVMTPDDLRFAILAGDSKSLSKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+ K + S + + S A++ALV LGY A A Sbjct: 121 AERITLELRDKLKLSEDELLGGTSASAADIGSMDGDNSARDEAVAALVALGYNSSDAMKA 180 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 V VL K +D++ +++LAL+ + Sbjct: 181 VRKVLASSKEAGEDTEILLKLALKEM 206 >gi|145636553|ref|ZP_01792221.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittHH] gi|145270378|gb|EDK10313.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittHH] Length = 204 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + + + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIRSVPSIEPHTENSSDEAISALIALGYKPSEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|157375170|ref|YP_001473770.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3] gi|189045772|sp|A8FUW9|RUVA_SHESH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157317544|gb|ABV36642.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3] Length = 205 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 111/207 (53%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQG+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGLLVEKQAPEILLEVQGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYTPAPVINTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V + + D +I+ +L+++ Sbjct: 181 KAVSAVYQ---DGMDSETLIKSSLKSM 204 >gi|254482531|ref|ZP_05095770.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2148] gi|214037222|gb|EEB77890.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2148] Length = 204 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+GN+ +L++V GV Y + P+ TL L ++G +L +R+D L Sbjct: 1 MIGRIRGNLVHKQPPVILVEVGGVGYELQVPMTTLFQLPELGAEVSLVTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + DR F L V GVG ++A+ +LS + + + + + +PG+ K Sbjct: 61 YGFAQERDRALFRQLIKVSGVGPKLALTILSGMDSASFARCVQRDDISSLVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + ++ Q+ +A AL+ LGY +A Sbjct: 121 AERLLVEMRDKLKDWLGQLDGELPSSGPAQSAAPV--DRVADAEGALIALGYKPAEAARM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + +I + +IR AL+++ Sbjct: 179 VAAV--NDDSIENSEDLIRRALKSM 201 >gi|90417110|ref|ZP_01225038.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2207] gi|90331126|gb|EAS46382.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2207] Length = 199 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LIDVQGV Y + + T + +G+ TL +R+D +L Sbjct: 1 MIGRLQGKVIEKQAPDLLIDVQGVGYEVLVSLNTFFGVPGVGEITTLHTHFVVREDVQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L V GVG ++A+ +LS ++A + + + + ++PG+ K Sbjct: 61 YGFGTQSERQLFRHLIKVNGVGPKMALAILSGMSANDFAICVHNNDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + D + + P + A SAL+ LGY A Sbjct: 121 AERLLIEMRDKIGDM------DATAAGSATGAQEAKPDISQEAESALIALGYKPADAAKI 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + V + ++ D ++IRLAL+++ Sbjct: 175 ISRVATE--SVNDAGELIRLALKSMGS 199 >gi|54294187|ref|YP_126602.1| holliday junction DNA helicase [Legionella pneumophila str. Lens] gi|54297206|ref|YP_123575.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str. Paris] gi|148358830|ref|YP_001250037.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str. Corby] gi|296106875|ref|YP_003618575.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99 Alcoy] gi|81368758|sp|Q5WX47|RUVA_LEGPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81370703|sp|Q5X5R9|RUVA_LEGPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230562|sp|A5IBE1|RUVA_LEGPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|53750991|emb|CAH12402.1| holliday junction DNA helicase [Legionella pneumophila str. Paris] gi|53754019|emb|CAH15490.1| holliday junction DNA helicase [Legionella pneumophila str. Lens] gi|148280603|gb|ABQ54691.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str. Corby] gi|295648776|gb|ADG24623.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99 Alcoy] gi|307610000|emb|CBW99532.1| holliday junction DNA helicase [Legionella pneumophila 130b] Length = 199 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G I +++DV GV Y + + T + L + T +R+D + Sbjct: 1 MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPIGLHIHTIVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVG ++AM VLS I+ E ++ I +N+ ++ ++PGI K Sbjct: 61 LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ V AISAL LGY +A Sbjct: 121 TAERLVVEMRDSIKQFDGSVSDTF-------QKQAGSTHSQQEAISALEALGYKPQEAWK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 V + K+ Q+IR AL+ +S Sbjct: 174 VVNKIDNGNKS---CEQLIREALQILSS 198 >gi|92118982|ref|YP_578711.1| Holliday junction DNA helicase RuvA [Nitrobacter hamburgensis X14] gi|91801876|gb|ABE64251.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter hamburgensis X14] Length = 206 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G L +ET++R+DQI+L Sbjct: 2 MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGAAAVLSIETYVREDQIKL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+WF LLQ+VQGVGARVA+ VL ++ +L +I L++ +A+ PG+ K+ Sbjct: 62 YGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLANAIALRDKASVARTPGVGPKV 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + ++V + P +AISALVNLGYGQ QAT A Sbjct: 122 AERIVTELKDKAPAFANVDPAVVHLAG--AIDDARAPRPVRDAISALVNLGYGQPQATAA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + A+ +Q+IRL L+ ++ Sbjct: 180 IAVASRSAGDDAETAQLIRLGLKELA 205 >gi|304393330|ref|ZP_07375258.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130] gi|303294337|gb|EFL88709.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130] Length = 205 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 131/207 (63%), Gaps = 2/207 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DVQGV Y ++C RT+ L G+ L +ETH+R+ +I+L Sbjct: 1 MIGKLKGTVDSFGEDWVILDVQGVGYQVHCSTRTMGTLPAAGEAAQLAIETHVRETEIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +DL+R WF LLQ+VQGVGARVA+ +L +T E+ +I LQ+ +A+ PG+ K+ Sbjct: 61 YGFTADLERNWFRLLQNVQGVGARVALAILGTLTPGEIASAIALQDKATVARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +LS + +++ + S +A+SAL NLGY QA+ A Sbjct: 121 AQRIVAELKDKAPALSGDATGTIGL--QQELGAGAASSAVQDAVSALTNLGYSSQQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V L K + A + +IR+ L+ +S Sbjct: 179 VKLALDKAGDDAPSATLIRMGLKELSS 205 >gi|254504698|ref|ZP_05116849.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11] gi|222440769|gb|EEE47448.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11] Length = 205 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQALPRAGEAAVLFIETIVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R+WF +L +VQGVGA+VA+G+L + A+E+ +I L + I++ PG+ ++ Sbjct: 61 YGFAAEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKATISRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK KA L+S+ Q ++ ++ + P A+SAL NLGYGQ QA+ A Sbjct: 121 AERILSELKDKAPGLASIDQDTIAVSQTVADNVAARP--VAEAVSALTNLGYGQPQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ A +IRL L+ ++ Sbjct: 179 VAKAMQSAGEDATTETLIRLGLKELA 204 >gi|119774975|ref|YP_927715.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B] gi|166200259|sp|A1S6N9|RUVA_SHEAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119767475|gb|ABM00046.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B] Length = 205 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + + VLIDV GV Y + P+ + L G ++ +R+D L Sbjct: 1 MIGRLKGILVEKHAPEVLIDVGGVGYELQMPLTSFYELPLPGAEVIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F LL GVG ++A+ +LS +TA E + + + + ++PG+ K Sbjct: 61 YGFIHKEERSLFRLLIKANGVGPKLALTILSGMTAKEFIGCLERDDIATLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S+ + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASMGAEREFVLKSNFTPAPVAATVEEDAIAALLSLGYKPQQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV S ++ D Q+I+ AL+++ Sbjct: 181 KAVSSAFQEGM---DPEQLIKAALKSM 204 >gi|212635161|ref|YP_002311686.1| Holliday junction DNA helicase RuvA [Shewanella piezotolerans WP3] gi|226725447|sp|B8CNY0|RUVA_SHEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212556645|gb|ACJ29099.1| DNA recombination protein, RuvA [Shewanella piezotolerans WP3] Length = 205 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VLIDV GV Y I P+ + L +IG +F +R+D L Sbjct: 1 MIGRIRGLLVEKQAPEVLIDVSGVGYEIQMPLTSFYELPEIGLEAVVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL GVG ++A+ +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFISKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPVVANTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V + D +I+ AL+++ Sbjct: 181 KAVSAVY---VDGIDSESLIKSALKSM 204 >gi|240949538|ref|ZP_04753878.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305] gi|240296111|gb|EER46772.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305] Length = 200 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEETTIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK LS Q D+ + + S + A AL+ LGY A Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMASSVEPSDEARDALIALGYKPADAEKM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V A Q+IR AL+ Sbjct: 178 IKKV---NLVGATSEQLIREALK 197 >gi|46143844|ref|ZP_00133975.2| COG0632: Holliday junction resolvasome, DNA-binding subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207771|ref|YP_001052996.1| Holliday junction DNA helicase RuvA [Actinobacillus pleuropneumoniae L20] gi|303252521|ref|ZP_07338684.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247270|ref|ZP_07529319.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249498|ref|ZP_07531486.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256311|ref|ZP_07538094.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260744|ref|ZP_07542433.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166229626|sp|A3MZ05|RUVA_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126096563|gb|ABN73391.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648489|gb|EFL78682.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856243|gb|EFM88397.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858491|gb|EFM90559.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306865137|gb|EFM97037.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869583|gb|EFN01371.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 201 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + V E A A ALV LGY A Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSV--ETIVATHSHDPADEARDALVALGYKLADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199 >gi|226329884|ref|ZP_03805402.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198] gi|225200679|gb|EEG83033.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198] Length = 206 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG+I+G I VLI+ GV Y I P+ L IG ++ + +R+D Sbjct: 1 MIGRIRGIILEKQPPVVLIEAGSGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F L V GVG ++A+ +LS ++A + V +I ++ + ++PG+ K Sbjct: 61 LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQ--DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K + L+ + + D+ + A +AL+ LGY +A Sbjct: 121 TAERLVVEMKDRFKGLNGDLFENSDIELPESTPSKAPKAADIEAEASAALIALGYKPQEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V K D +IR ALRA Sbjct: 181 AKMISKVAKL---GTDSETLIREALRA 204 >gi|114321641|ref|YP_743324.1| Holliday junction DNA helicase RuvA [Alkalilimnicola ehrlichii MLHE-1] gi|122310889|sp|Q0A5Q3|RUVA_ALHEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114228035|gb|ABI57834.1| Holliday junction DNA helicase subunit RuvA [Alkalilimnicola ehrlichii MLHE-1] Length = 208 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +L+DV GV Y + P+ T L TL+ +R D L Sbjct: 1 MIGRLHGTVAERHPPALLLDVGGVGYELEAPMSTFYALPAGDQAVTLWTHLAVRDDGQAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F +L + GVG ++A+ +LS + A L I ++ + ++PG+ K Sbjct: 61 YGFASRAERDLFRVLIRISGVGPKLALALLSGMNAEGLQRCIEREDVATLTRLPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---VNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL+ + L + ++ +A+SALV LGY +A Sbjct: 121 AQRLIVELRDRLDGLLPAASGGVPARTGSGEQLDAPAGPQGSREDAVSALVALGYKPAEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 V +V N ++IR AL+A Sbjct: 181 GRLVNAV--PGANDLPSEELIRRALQA 205 >gi|52841519|ref|YP_095318.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81377601|sp|Q5ZW00|RUVA_LEGPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52628630|gb|AAU27371.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 199 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G I +++DV GV Y + + T + L + T +R+D + Sbjct: 1 MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPVGLHIHTIVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVG ++AM VLS I+ E ++ I +N+ ++ ++PGI K Sbjct: 61 LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ V AISAL LGY +A Sbjct: 121 TAERLVVEMRDSIKQFDGSVSDTF-------QKQAGSTHSQQEAISALEALGYKPQEAWK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 + + K+ Q+IR AL+ +S Sbjct: 174 VMNKIDNGNKS---CEQLIREALQILSS 198 >gi|225410073|ref|ZP_03761262.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme DSM 15981] gi|225042421|gb|EEG52667.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme DSM 15981] Length = 207 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 4/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + ED ++++ GV I+ P+ L L IG T++ +R+D + L Sbjct: 1 MISYIKGPLTAIEEDVIVVEAGGVGMGIHVPLSVLDRLPGIGREVTVYTYFQVREDAMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ DR F L V GVG + A+G+LS +T +L +I+ ++K I++ PGI K Sbjct: 61 YGFLNRQDRDMFRQLIGVNGVGPKAALGILSTMTPDDLRMAIVTGDAKAISRAPGIGPKT 120 Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ +LK K + + SM A A+ ALV LGY +A Sbjct: 121 AQRLILDLKDKISMEEMLGNLALPCDGGASAALGTASMGEAAKEAVQALVALGYSNMEAN 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V E A +++ +LR +S Sbjct: 181 KAVKQVEVTETMTA--EDVLKASLRYLS 206 >gi|307245098|ref|ZP_07527191.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254053|ref|ZP_07535900.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258509|ref|ZP_07540246.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853987|gb|EFM86199.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862978|gb|EFM94925.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867413|gb|EFM99264.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 201 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + V E A A ALV LGY A Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSV--ETIVATHSHDPADEARDALVALGYKLADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199 >gi|149375111|ref|ZP_01892883.1| Holliday junction DNA helicase motor protein [Marinobacter algicola DG893] gi|149360475|gb|EDM48927.1| Holliday junction DNA helicase motor protein [Marinobacter algicola DG893] Length = 210 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + L++ G+ Y + P T L + G L +R+D L Sbjct: 1 MIGRIRGILIEKSPAQALVECAGLGYEVDIPYTTFFNLPETGAELVLHTHFVVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S LDR F LL V GVG ++A G+LS + A + + + +++ + ++PG+ K Sbjct: 61 YGFSSRLDRDLFRLLIKVNGVGPKLAAGILSGLDANQFIRCVEARDANALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+ + L + A + + A +AL+ LGY + Sbjct: 121 AERLLIEMTDRIGQLEGQFIPASPNATVTSDSANAGVVAGHDPREEAEAALIALGYKPQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ A+ V ++ + ++IRLALRA+ Sbjct: 181 ASKAISKVAEESMS---SQELIRLALRAM 206 >gi|298370450|ref|ZP_06981766.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014 str. F0314] gi|298281910|gb|EFI23399.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014 str. F0314] Length = 193 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + +IDV GV Y + ++T L G+ L+ + +R+D L Sbjct: 1 MIGRLKGILVEKNPPQAVIDVNGVGYEVDVSMQTFYRLPATGEAVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS ++A EL +++ ++ K ++ PGI K Sbjct: 61 FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + S V+ A + + + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLV----------SAVSDGPAALSAAADGTDDIVSTLLALGYSEREAKAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K D + +RLAL+ + Sbjct: 171 V----KGLPKGTDVGEGVRLALKNL 191 >gi|293390518|ref|ZP_06634852.1| holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951052|gb|EFE01171.1| holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 204 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQG+ Y + P+ + L ++G LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTRLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPGI K Sbjct: 61 FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + ++ + + I + + A++ALV LGY A Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEPSNEAVAALVALGYKPLDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E QIIR AL+A Sbjct: 181 MVKKVSKPE---LSSEQIIREALKA 202 >gi|119504258|ref|ZP_01626338.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2080] gi|119459766|gb|EAW40861.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2080] Length = 209 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 2/204 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + +L+DV G+ Y + P+ TL L ++G+ TL +R+D L Sbjct: 1 MIGYLRGRLIVKRPPELLVDVGGIGYELQVPMTTLFDLPEVGEEVTLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + DR+ F L V GVG ++A+ +LS + A + + + + +PG+ K Sbjct: 61 YGFREEADRRLFRELIKVSGVGPKLALALLSGLDARAFAQCLQRDDVATLVALPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ KA + + + + A ALV LGY +A+ Sbjct: 121 AERLLVEMRDKAGKWLEELSPAIPGTQGQFVSVAPAMDSRTEAEQALVALGYKLPEASRL 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +V +++I ++IR AL+A Sbjct: 181 VAAV--DDESIESSEELIRRALKA 202 >gi|254281679|ref|ZP_04956647.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B] gi|219677882|gb|EED34231.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B] Length = 207 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + + +++DV GV Y I P+ TL L IG +L +R+D +L Sbjct: 1 MIGRIRGILAAKHPPEIVVDVGGVGYEIQVPMTTLFQLPDIGTEVSLVTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S++DR+ F L V GVG R+A+ +LS + A E + + + +PG+ K Sbjct: 61 FGFVSEVDRRLFRELIKVSGVGPRLALTLLSGMDAREFSRCLQRDDVASLVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ KA + +M+ A + A ALV LGY A+ Sbjct: 121 AERLLVEMRDKAGKWLGELSPEMATTVGV-APGPAPDDAREEAEQALVALGYKLADASRL 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V SV + + A Q+IR AL+A Sbjct: 180 VASV---DDSGASSEQLIRRALQA 200 >gi|251793066|ref|YP_003007792.1| Holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus NJ8700] gi|247534459|gb|ACS97705.1| holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus NJ8700] Length = 204 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQGV Y + P+ + L ++G +LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYNLPEVGKQTSLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPGI K Sbjct: 61 FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + + + A + + A++AL+ LGY A Sbjct: 121 AERLLVELKGKFKEVKTHDFFVQGDHLPSVNAETVATIEPSNEAVAALIALGYKPLDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKKVSKPE---LSSEQLIREALKA 202 >gi|297539687|ref|YP_003675456.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301] gi|297259034|gb|ADI30879.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301] Length = 192 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + VLID GV Y P+ T L IG+ + +R+D L Sbjct: 1 MIGRLNGILLEKTPPLVLIDCNGVGYECEVPMSTFYNLPAIGEKVVMLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R F L V G+GA+ A+ +LS ++ +LV+++ +Q++ ++ ++PG+ K Sbjct: 61 YGFGSDQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVAMQDTAMLTRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ S + + ++AL++LGY + +A A Sbjct: 121 AERLLLELKDKF-----------TVAGLSPSNSNQPKSASSDVLNALISLGYNEREALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V K A ++ I+LAL+++S Sbjct: 170 V----KLLPADATVAEGIKLALKSLS 191 >gi|257465001|ref|ZP_05629372.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202] gi|257450661|gb|EEV24704.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202] Length = 200 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEDTTIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRMLFRELIKTNGVGPKLALAILSAMSVSQFASAVENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK LS Q D+ + + S + A AL+ LGY A Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMTSSAEPSDEARDALIALGYKPADAEKM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V A Q+IR AL+ Sbjct: 178 IKKV---NLVGATSEQLIREALK 197 >gi|190149554|ref|YP_001968079.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249558|ref|ZP_07335765.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251815|ref|ZP_07533717.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307262875|ref|ZP_07544499.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229470525|sp|B3H0C5|RUVA_ACTP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189914685|gb|ACE60937.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651632|gb|EFL81781.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860722|gb|EFM92733.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871780|gb|EFN03500.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 201 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + V E A A ALV LGY A Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSV--ETIVATHSHDPADEARDALVALGYKLADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199 >gi|118588334|ref|ZP_01545743.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM 12614] gi|118439040|gb|EAV45672.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM 12614] Length = 205 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQGLPRPGEAAVLFIETIVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+WF +L +VQGVGA+VA+G+L + A+E+ +I L + VI++ PG+ ++ Sbjct: 61 YGFGIEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKAVISRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK KA L++V Q ++ ++ + P A+SAL NLGY Q QA+ A Sbjct: 121 AERIISELKDKAPGLATVDQGTIAVSQTIADNVAARP--VAEAVSALTNLGYAQAQASGA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L+ A +IRL L+ ++ Sbjct: 179 VAKALQSAGEDATTETLIRLGLKELA 204 >gi|52306819|gb|AAU37319.1| RuvA protein [Mannheimia succiniciproducens MBEL55E] Length = 215 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV G+ Y + P+ + L +IG LF +R+D L Sbjct: 12 MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 71 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 72 FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 131 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + + S V S A A++AL+ LGY A Sbjct: 132 AERLLVELKGKFKGIKQPDFFVESSHVGAVDPVTTSPEVPAEEAVAALMALGYKASDAEK 191 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K Q+IR AL+A Sbjct: 192 MVKRIAKPH---LTSEQLIREALKA 213 >gi|113460415|ref|YP_718477.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 129PT] gi|170717663|ref|YP_001783495.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336] gi|123131938|sp|Q0I1M4|RUVA_HAES1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045755|sp|B0UVK3|RUVA_HAES2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|112822458|gb|ABI24547.1| Holliday junction DNA helicase subunit RuvA [Haemophilus somnus 129PT] gi|168825792|gb|ACA31163.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336] Length = 204 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DVQGV Y + P+ + L ++G TLF +R+D L Sbjct: 1 MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E V +I + + +IPG+ K Sbjct: 61 FGFSHKQDRSLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK L S + + A+SAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKLDQSLQLDEAVSALIALGYKPIEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V VLK + Q+IR AL+A Sbjct: 181 MVKKVLKAD---LTSEQLIREALKA 202 >gi|261868502|ref|YP_003256424.1| Holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413834|gb|ACX83205.1| holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 204 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQG+ Y + P+ + L ++G LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTCLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPGI K Sbjct: 61 FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + ++ + + I + + A++ALV LGY A Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEPSNEAVAALVALGYKPLDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E QIIR AL+A Sbjct: 181 MVKKVSKPE---LSSEQIIREALKA 202 >gi|170726918|ref|YP_001760944.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908] gi|229560127|sp|B1KGY0|RUVA_SHEWM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169812265|gb|ACA86849.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908] Length = 205 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 106/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++V G+ Y + P+ + L + ++ +R+D L Sbjct: 1 MIGRLRGVLVEKQAPEILLEVAGLGYEVQMPLTSFYELPDLNQEAQIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++ + +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLLETSAGSEREFMLKSNYTPAPVVNTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ + +I+ +L+++ Sbjct: 181 KAVSAAFKEGMS---SEDLIKSSLKSM 204 >gi|307545151|ref|YP_003897630.1| Holliday junction DNA helicase motor protein [Halomonas elongata DSM 2581] gi|307217175|emb|CBV42445.1| Holliday junction DNA helicase motor protein [Halomonas elongata DSM 2581] Length = 203 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + + TL L G+ +L+ +R D L Sbjct: 1 MIGRLRGTLLEKQPPWLVVDVAGVGYELEASMTTLVALPGCGEDVSLYTHLSVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G ++A+ +LS + + ++ + K + ++PG+ K Sbjct: 61 YGFAREQERSLFRALIKVNGIGPKLALAILSGMDEDAFIRCVMDDDIKALTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + Q A S +A +ALV+LGY +AT Sbjct: 121 AERLVIEMRDRFPHWQDSTQVSAGDAGM-GATTPSPKDPLADAEAALVSLGYKPSEATRM 179 Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206 L ++ +I+ AL R ++ Sbjct: 180 ----LSGLEDEGSTEAMIKAALARRMA 202 >gi|153875446|ref|ZP_02003246.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp. PS] gi|152068090|gb|EDN66754.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp. PS] Length = 203 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +++DVQGV Y ++ P+ T L +I +L +R+D L Sbjct: 1 MISRLRGLLIEKQPPLLVVDVQGVGYEVFAPMSTFYNLPEINAEISLLTHLSIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F L V G+G ++A+ +LS + + V+ + ++ + +IPG+ K+ Sbjct: 61 YGFLNESERGLFRDLIRVSGIGPKLALSILSSMELSMFVQCVNNNDTARLIRIPGVGKKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + ++ S + + +AISAL+ LGY AT Sbjct: 121 AERLVVEMRDRLKNWNTTNNTAPSPTTTSSTLTLGIATPIEDAISALIALGYKPQDATRW 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +V ++ +IR AL++ Sbjct: 181 VQAVAEE---GLTSEVLIRRALQS 201 >gi|296313720|ref|ZP_06863661.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC 43768] gi|296839643|gb|EFH23581.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V S + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAPSENDETNDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|152996211|ref|YP_001341046.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1] gi|189045756|sp|A6VXD2|RUVA_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150837135|gb|ABR71111.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1] Length = 200 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +++DV G+ Y + + T+ L +IG TLF +++D L Sbjct: 1 MIGRIVGTLIEKTPPELMVDVNGIGYEVSASMTTIYDLPQIGGQVTLFTHLLVKEDSHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F +L V G+G ++A+ +LS +++ EL+ ++ + + +IPG+ K Sbjct: 61 YGFIDKNERALFRVLIKVNGIGPKMALAILSSMSSEELITNVQESDVTALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L + D+ + + P A +AL++LGY +A A Sbjct: 121 AERLIIELRDK---LGQAAKTDLFSAPAVLRQVQADP--RQEAEAALISLGYKPQEAAKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + A+ +I+ AL+ + Sbjct: 176 IAGVP---VDAANSEDVIKAALKGM 197 >gi|149910565|ref|ZP_01899204.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36] gi|149806408|gb|EDM66381.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36] Length = 206 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y I P+ LG + ++ +R+D L Sbjct: 1 MIGRLRGTLLEKQPPEILLDVNGVGYEIKLPMSCFYELGDVDKEVIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R F L V GVG ++ + +LS +TA + + + + ++PG+ K Sbjct: 61 YGFNNKMERLMFRELIKVNGVGPKLGLAILSGMTANQFAHCVEHDDINSLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ + + + + + + Q + + + A AL+ LGY Q Sbjct: 121 AERLLVEMRDRLKNWVTQDLFTPEADKAQLQGYGNTASNAIEEAEEALIGLGYKPAQVAK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V + + +IIRL+LRA Sbjct: 181 MIKQVAQPSMS---CEEIIRLSLRA 202 >gi|88800180|ref|ZP_01115748.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297] gi|88777026|gb|EAR08233.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297] Length = 201 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+DV G+ Y I CP+ T+ L G+ TL +R+D L Sbjct: 1 MIGRIQGTLLENKAPELLVDVHGLGYEIQCPLSTIFALPATGEIVTLHTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG ++A+ +LS + ++SI Q+ + +IPG+ K Sbjct: 61 YGFATQKERTLFRTLIKISGVGPKLALAILSGMETNRFIQSIQDQDPGALVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K K L S + ++ + + S +A AL+ LGY QA+ A Sbjct: 121 AERLIVEMKDKLAQLGSQGAELITPM-EALVEKNSRTDALQDAEGALIALGYKPTQASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + IIR AL+A+ Sbjct: 180 VSNVAA---DGMSSEDIIRAALKAM 201 >gi|261378519|ref|ZP_05983092.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685] gi|269145069|gb|EEZ71487.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685] Length = 194 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ +F + +R+D L Sbjct: 1 MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFYNLPPLGETVQVFTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK I V S + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLI---------THTVTDGLFATPSENDETNDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + D + +RLAL+ + Sbjct: 172 VKGI----PKGTDVGEGVRLALKNL 192 >gi|121998991|ref|YP_001003778.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1] gi|166230558|sp|A1WZ64|RUVA_HALHL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|121590396|gb|ABM62976.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1] Length = 204 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++++ G+ Y + P+ T+ L + G L +R+D L Sbjct: 1 MIARLRGTLLEKRPPTLVVEANGLGYEVEAPLSTIEALPETGREVILHTHLSVREDGQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++ + +LS + ELV + + K + Q+PGI K Sbjct: 61 FGFRTRAERDLFRRLIRVSGVGPKLGLALLSGVDGEELVRCVRDDDPKRLTQVPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + L V + H AI LV LGY +A Sbjct: 121 AERLIVELRDR---LDGVGGGSTAAPAAGADHPTGENDPVSEAIEGLVALGYKPPEAARM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + E IIR AL+ Sbjct: 178 ARNAAEPELG---CEAIIRRALQR 198 >gi|311694932|gb|ADP97805.1| Holliday junction ATP-dependent DNA helicase RuvA [marine bacterium HP15] Length = 209 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + L++ G+ Y + P T L + GD TL +R+D L Sbjct: 1 MIGRIRGILVEKAPGQALVECAGLGYEVDIPYTTFFHLPETGDEVTLHTHFAVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S LDR F LL V GVG ++A+G+LS + A + + + ++S + ++PG+ K Sbjct: 61 YGFASSLDRDLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVENRDSASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+ + L + P A +AL+ LGY + Sbjct: 121 AERLLIEMADRIGQLEGQFVPTSPEATGVGQPGGQGPAGGPVATEEAEAALIALGYKPQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A A+ V ++ + +IRLALR + Sbjct: 181 AAKAISKVAEEGMS---SETLIRLALRNM 206 >gi|71279553|ref|YP_268842.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H] gi|90134812|sp|Q483C5|RUVA_COLP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71145293|gb|AAZ25766.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H] Length = 211 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 112/213 (52%), Gaps = 11/213 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+ GV Y + P+ ++ L ++ T++ +R+D L Sbjct: 1 MIGRLRGMLVEKNSPEILIECAGVGYEVTMPMTSIYALPELEQQATIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R+ F LL V GVG ++A+ +LS ++A + V + + I +IPG+ K Sbjct: 61 YGFANKVERKLFRLLIKVNGVGPKLALAILSNMSADQFVSCVRHDDISAIVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAI----NAISALVNLGY 172 A R++ E++ + + +V D + A + +F +AI+AL++LGY Sbjct: 121 AERLLIEMRDRLKDWQAQQIHLVSDDGVIPEQLSAELSQETTFVNDNKGDAINALLSLGY 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 Q QA AV SV + + IIR AL+++ Sbjct: 181 KQVQADKAVKSVYNRGMS---SENIIRDALKSM 210 >gi|161510997|ref|YP_087904.2| Holliday junction DNA helicase motor protein [Mannheimia succiniciproducens MBEL55E] gi|88941980|sp|Q65UP1|RUVA_MANSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 204 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV G+ Y + P+ + L +IG LF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + + S V S A A++AL+ LGY A Sbjct: 121 AERLLVELKGKFKGIKQPDFFVESSHVGAVDPVTTSPEVPAEEAVAALMALGYKASDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K Q+IR AL+A Sbjct: 181 MVKRIAKPH---LTSEQLIREALKA 202 >gi|86574402|gb|ABD08959.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris HaA2] Length = 222 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 18 MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 77 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 78 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 137 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +L +V + H P +AISALVNLGYGQ QA A Sbjct: 138 AERIVTELKDKVPALGNVDPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQAAAA 195 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A +Q+I+L L+ +S Sbjct: 196 IAAASRAAGDDAATAQLIKLGLKELS 221 >gi|256823080|ref|YP_003147043.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069] gi|256796619|gb|ACV27275.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069] Length = 205 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 4/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG+I+G + +V+I+ GV Y I P+ T L + G+ L + ++ Sbjct: 1 MIGRIRGTLIEKIPPFVIIETTAGVGYEIQVPMTTFYQLPEEGEQAILSTHMSIAENLHA 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+S DR F L V GVG ++A+ +LS + E V ++ N + ++PG+ K Sbjct: 61 LYGFISTKDRALFRELIKVNGVGPKLALAILSGMETDEFVMTVHDGNVDRLVKLPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+ + S S ++ + + A+SAL+ LGY A+ Sbjct: 121 TAERLLVEMSDRLKDWSISAGLPSSQPSEASIAQTAKTDASQEAVSALIALGYKPQIASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AV V + A ++IRLALR ++ Sbjct: 181 AVTQVAHDD---AKSEELIRLALRQLAS 205 >gi|331007236|ref|ZP_08330443.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC1989] gi|330418952|gb|EGG93411.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC1989] Length = 207 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + Y+LIDV GV Y + P+ + L G+ L + ++ +L Sbjct: 1 MIGRLSGVLIEKQAPYLLIDVAGVGYEVQAPMTSFYPLPVTGEKVILHTHLSVSENAHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F + +R+ F L V GVG ++A+ +LS + E V+ + N + ++PG+ K Sbjct: 61 FAFYTLEERRLFRTLIKVSGVGPKMALAILSGMPVNEFVQCVKGDNVAALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + VN E A + + +A SAL+ LGY A Sbjct: 121 AERLIIEVKDRLGDLAEWESGGAANVNAESATPELLSNAVVADAESALIALGYKPTVAAQ 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + K E ++ +IRLAL++ Sbjct: 181 MISAAQKIE-SVTSSEALIRLALKS 204 >gi|309379780|emb|CBX21556.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 194 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATNEERQTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V AD + +RLAL+ + Sbjct: 172 VKGV----PKGADVGEGVRLALKNL 192 >gi|254674127|emb|CBA09911.1| holliday junction DNA helicase [Neisseria meningitidis alpha275] gi|325145258|gb|EGC67537.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240013] Length = 194 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|150397836|ref|YP_001328303.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419] gi|166200266|sp|A6UCT8|RUVA_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150029351|gb|ABR61468.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419] Length = 205 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 140/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+V++DV GV Y+ +C RTL+ LG+ G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLAKLGRAGEAAVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T EL +I LQ+ I++ PG+ K+ Sbjct: 61 FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + + + + P +A+SAL NLGY +DQA A Sbjct: 121 AVRIVTELKNKAPAFVGEMAPSIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK AD +++IRL L+ +S Sbjct: 179 VAAALKNGGEGADSARLIRLGLKELS 204 >gi|163751784|ref|ZP_02159001.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99] gi|161328348|gb|EDP99508.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99] Length = 205 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 107/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGVLLEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +T+ E V + + + ++PG+ K Sbjct: 61 YGFMTKQERALFRLLIKTNGVGPKLALTILSGMTSVEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + + + +AI+AL+ LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYRPAKIVNTAEDDAIAALLALGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K + ++I+ +L+++ Sbjct: 181 KSVSAAYK---DGMSSQELIKASLKSM 204 >gi|325205349|gb|ADZ00802.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M04-240196] Length = 194 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|315634723|ref|ZP_07890007.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter segnis ATCC 33393] gi|315476671|gb|EFU67419.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter segnis ATCC 33393] Length = 204 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQGV Y + P+ + L ++G +LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYHLPEVGKQTSLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + ++ + + + A++AL+ LGY A Sbjct: 121 AERLLVELKGKFKGVKNNDFFMQADHLPSLSMETIATAEPSNEAVAALIALGYKPVDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K Q+IR AL+A Sbjct: 181 MVKKVSK---PALSSEQLIREALKA 202 >gi|75676909|ref|YP_319330.1| Holliday junction DNA helicase motor protein [Nitrobacter winogradskyi Nb-255] gi|90135442|sp|Q3SP13|RUVA_NITWN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|74421779|gb|ABA05978.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter winogradskyi Nb-255] Length = 205 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G L +ET++R+DQI+L Sbjct: 1 MIGKLKGVIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGQAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQGVGARVA+ VL ++ +L +I L++ +A+ PGI K+ Sbjct: 61 FGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLASAIALRDKASVARTPGIGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA S ++V + P +AISALVNLGYGQ QAT A Sbjct: 121 AERIVTELKDKAPSFANVDPTVVHLAGD--LDDQRAPRPVRDAISALVNLGYGQPQATAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + A+ +Q+IRL L+ +S Sbjct: 179 IAAASRGAGENAETAQLIRLGLKELS 204 >gi|197284986|ref|YP_002150858.1| Holliday junction DNA helicase RuvA [Proteus mirabilis HI4320] gi|227355390|ref|ZP_03839791.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] gi|229560118|sp|B4ETP7|RUVA_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194682473|emb|CAR42407.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis HI4320] gi|227164614|gb|EEI49485.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] Length = 207 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG+I+G I VLI+ GV Y I P+ L IG ++ + +R+D Sbjct: 1 MIGRIRGVILEKQPPVVLIEAGNGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F L V GVG ++A+ +LS ++A + V +I ++ + ++PG+ K Sbjct: 61 LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQ---DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + L+ + + D+ + S A +AL+ LGY + Sbjct: 121 TAERLVVEMKDRFKGLNGDLFEQNGDIELPASASSKAPSAADIEAEASAALIALGYKPQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A + V AD +I+ ALRA Sbjct: 181 AAKMISRVATA---GADSETLIKEALRA 205 >gi|162138516|ref|YP_487870.2| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris HaA2] Length = 205 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +L +V + H P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKVPALGNVDPAVVHLSGALDDH--RAPRPVTDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A +Q+I+L L+ +S Sbjct: 179 IAAASRAAGDDAATAQLIKLGLKELS 204 >gi|304312895|ref|YP_003812493.1| Holliday junction resolvasome DNA-binding subunit [gamma proteobacterium HdN1] gi|301798628|emb|CBL46860.1| Holliday junction resolvasome DNA-binding subunit [gamma proteobacterium HdN1] Length = 208 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + ++IDV GV Y + P+ T L +G+ L +R+D L Sbjct: 1 MITHLSGTLRHKQAPQLVIDVSGVGYELDAPMTTFYRLPSLGERVELLTHLVVREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+G +VA+ +LS I + V I + + +IPG+ K Sbjct: 61 FGFATQEERSLFRALIKVTGIGPKVALAILSGIEVPQFVRCINCHDVSALIRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ + +S+ + E A +AL+ LGY +A Sbjct: 121 AERLIVEMQDRLPRTLETSLTALQEESLLGENTRPQQAHRPLDEAEAALIALGYKPQEAA 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + ++ Q+IR AL+ + Sbjct: 181 RCLNAL---NTEGLSSEQLIRQALKNM 204 >gi|126668399|ref|ZP_01739356.1| Holliday junction DNA helicase motor protein [Marinobacter sp. ELB17] gi|126627108|gb|EAZ97748.1| Holliday junction DNA helicase motor protein [Marinobacter sp. ELB17] Length = 209 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +++ QG+ Y + P+ T L G TL +R+D L Sbjct: 1 MIGRIRGILLEKKPAQAMVECQGLGYEVDIPLSTFLNLPDPGQELTLHTHFVVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S LDR F LL V GVG ++A+G+LS ++A++ + S+ +++ + ++PG+ K Sbjct: 61 FGFSSRLDRDLFRLLIKVNGVGPKLAVGILSGLSASQFIRSVQARDTSALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQA 177 A R++ E+ + L + + MP A +AL+ LGY +A Sbjct: 121 AERLLIEMTDRIGQLEGQFELTAASAPGATLPANGMPAANDPREEAEAALIALGYKPQEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + + + + Q+IR+ALR + Sbjct: 181 AKAISRIAE---DGMTNEQLIRMALRNM 205 >gi|322514922|ref|ZP_08067937.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus ureae ATCC 25976] gi|322119110|gb|EFX91264.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus ureae ATCC 25976] Length = 201 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IP I K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPSIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + V E A A ALV LGY A Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSV--EMIVATHSHDPADEAQDALVALGYKLADADKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199 >gi|329893679|ref|ZP_08269813.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC3088] gi|328923606|gb|EGG30918.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC3088] Length = 205 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + ++++ GV Y I P+ TL L +GD + +R+D L Sbjct: 1 MIGSIRGRLIVKQPPDIVVEAAGVGYEIQVPMTTLFQLPALGDDVLILTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D DRQ F L V GVG ++A+ +LS + A + + + +PG+ K Sbjct: 61 YGFVDDTDRQLFRQLIKVNGVGPKLALAILSGMDAVAFARCVGRNDVSALVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + S + + A +A SALV LGY +A+ Sbjct: 121 AERLIVEMRDRLGDWLSQLSPQGENAGGIVGATIAHDPIA-DAESALVALGYKPQEASRL 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V SV + D +IRLALR+ Sbjct: 180 VQSVAGDQD--LDSETLIRLALRS 201 >gi|271500732|ref|YP_003333757.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586] gi|270344287|gb|ACZ77052.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586] Length = 205 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L +G +F +R+D L Sbjct: 1 MIGRLRGIIVEKQPPQVLLEVGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ Q + ++PG+ K Sbjct: 61 FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + A + P A +ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPAATGNTTPETDPLAEAEAALVALGYKPQEAG 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V + AD +IR ALRA Sbjct: 181 RMVSKVSR---PGADCETLIRDALRA 203 >gi|254490165|ref|ZP_05103356.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxidans DMS010] gi|224464651|gb|EEF80909.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxydans DMS010] Length = 198 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I +++DV GV Y + P+ T L + D TLF +R+D L Sbjct: 1 MIGRLRGIILEKQPPELVLDVHGVGYELSAPMSTFFNLPALNDEVTLFTHMVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F ++ +R F L V GVGA++A+ +LS S+ ++ + ++PG+ K Sbjct: 61 YAFATERERLLFRSLLKVNGVGAKLALTILSGSDVDTFARSVQEGDTASLTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + +SS + D + H+ A+ ALV LGY +A Sbjct: 121 AERLIVEMRDRLKEVSSAMGLDAIVTD----HVKPAAGAKSEAVEALVALGYKAAEADKM 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + S + + Q+IR AL+ Sbjct: 177 LRSF---DTEGMNTEQLIRQALQR 197 >gi|27376647|ref|NP_768176.1| Holliday junction DNA helicase RuvA [Bradyrhizobium japonicum USDA 110] gi|44888480|sp|Q89U81|RUVA_BRAJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|27349788|dbj|BAC46801.1| holliday junction DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 205 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDFVILDVGGVGYQVHCSTRTLQHLPSPGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQGVGA+VA+ VL + ++L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDQEREWFRLLQTVQGVGAKVALAVLGTLAPSDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + ++V + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDQ--RAPRPVADAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S + A+ +Q+IRL L+ ++ Sbjct: 179 IASASRSAGEGAETAQLIRLGLKELA 204 >gi|125972705|ref|YP_001036615.1| Holliday junction DNA helicase subunit RuvA [Clostridium thermocellum ATCC 27405] gi|256004864|ref|ZP_05429838.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM 2360] gi|281416893|ref|ZP_06247913.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20] gi|166230544|sp|A3DBU3|RUVA_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|125712930|gb|ABN51422.1| Holliday junction DNA helicase subunit RuvA [Clostridium thermocellum ATCC 27405] gi|255991174|gb|EEU01282.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM 2360] gi|281408295|gb|EFB38553.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20] gi|316941059|gb|ADU75093.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM 1313] Length = 202 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +E D+++++ GV Y I+ + T+S +G+IG ++ ++R+D I L Sbjct: 1 MFAYIRGRLEYKNNDFLIVESNGVGYRIFTSLSTISGIGEIGQEVKVYTYLYVREDVISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL SV GVG + A+ VLS I+ + ++I + K + + GI KI Sbjct: 61 YGFLTQEELNVFELLISVSGVGPKAAVSVLSAISPSRFSLAVITDDVKTLTKAQGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K K + + S A+SAL+ LGY +A A Sbjct: 121 AQRIILELKDKIKKEQLTEYAQSEEGGKV---LDTDSSKMAEAVSALMVLGYSPAEANKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V +++ +I II+ AL+ ++ Sbjct: 178 VSAVYREDMDI---ETIIKNALKGLA 200 >gi|145631439|ref|ZP_01787209.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae R3021] gi|144982976|gb|EDJ90485.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae R3021] Length = 204 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|292670920|ref|ZP_06604346.1| crossover junction endoribonuclease subunit A [Selenomonas noxia ATCC 43541] gi|292647541|gb|EFF65513.1| crossover junction endoribonuclease subunit A [Selenomonas noxia ATCC 43541] Length = 200 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + DY +DV V Y ++ +T + L +G+ L++ TH+R+D I L Sbjct: 1 MIGFLRGKVTYTFPDYCFLDVHDVGYRVFVSHQTRNHL-SVGEEVMLYIHTHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L + G+G +VA G+LS ITA E I ++ K I ++PGI K Sbjct: 60 YGFFSQEEYDLFQHLIGISGIGPKVAQGILSAITANEFYRLIHQKDVKAITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K L+S D S + SM A AL+NLG+GQ + Sbjct: 120 AERIILELKDK---LTSSSFDDDSFADHAAGFADSMGDKISEATEALLNLGFGQSE---- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + SVLKK+ + +IIR AL + Sbjct: 173 IQSVLKKKMDWESTEEIIRYALAEL 197 >gi|224827243|ref|ZP_03700337.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002] gi|224600532|gb|EEG06721.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002] Length = 197 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DV GV Y + P+ T L +G+ TL+ +R+D L Sbjct: 1 MIGRLTGQLIEKLPPQIVVDVGGVGYEVDVPMSTFYLLPALGEKTTLYTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R+ F L V G+GA++A+ +LS ++A EL ++ ++ K ++ +PGI K Sbjct: 61 FGFASKGERETFRQLIKVGGIGAKIALAILSGLSADELALAVASEDLKRLSSVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + P + ++AL+ LGY +A A Sbjct: 121 AERLVLELRGKL-------ATGGAVTTPGGLPFAATPDDKSDIVNALLALGYNDKEAAAA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 K S +RLAL+++ Sbjct: 174 ----TKCLPPEVTVSDGVRLALKSL 194 >gi|225374901|ref|ZP_03752122.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM 16841] gi|225213284|gb|EEG95638.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM 16841] Length = 203 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E EDY++++ G+ Y I+ +T L +G+ ++ H+R+D + L Sbjct: 1 MYAYIKGTLEETGEDYIVVEAGGIGYQIFTTGQTFQYLPSMGEEVKVYTYLHVREDAMIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL V G+G + A+ +LS +T +L +++ ++K IA+ PG+ K Sbjct: 61 FGFLTKDDLFVFRLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + Q+ N Q AI ALV LGY +A A Sbjct: 121 AQRLILELKDKLSLEDAFEQKLAKNDNPVQNKAKG---AKNEAIEALVALGYSSSEALKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + D I++ AL+ ++ Sbjct: 178 LNGI--EITDDTDVEDILKAALKNMA 201 >gi|319775819|ref|YP_004138307.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047] gi|317450410|emb|CBY86626.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047] Length = 204 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V+K E Q+IR AL+A Sbjct: 181 MVKRVVKPE---LTSEQVIREALKA 202 >gi|238796296|ref|ZP_04639805.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC 43969] gi|238719741|gb|EEQ11548.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC 43969] Length = 196 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 5/196 (2%) Query: 11 GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70 VL++ GV Y + P+ L +G +F + +R+D L+GF +R Sbjct: 2 EKQPPLVLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERA 61 Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K Sbjct: 62 LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121 Query: 131 KAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188 + L+ + + + + S A SALV LGY +A+ V + K Sbjct: 122 RFKGLNGDLFNNTGDITLPASTSSQISDADIEAEAASALVALGYKPQEASRLVSKIAK-- 179 Query: 189 KNIADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 180 -PGADCETLIRDALRA 194 >gi|163758803|ref|ZP_02165890.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica DFL-43] gi|162284093|gb|EDQ34377.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica DFL-43] Length = 205 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 101/206 (49%), Positives = 141/206 (68%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG IE + ED+VLIDV GVCY+ +C RTLS LG G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIEEIDEDHVLIDVHGVCYVAFCSSRTLSRLGSAGEAAVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+R+WF LLQSVQGVGA+VA+ VLS +T +EL +I LQ+ ++A+ PGI K+ Sbjct: 61 FGFETALEREWFRLLQSVQGVGAKVALAVLSTLTTSELANAIALQDKAMVARAPGIGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +LS M + + S P +A+SAL NLGY +DQA A Sbjct: 121 AQRIVAELKNKAPALSGDAGSTMGLKQELGEGVASAP--IADAVSALCNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K AD +++IRL L+ ++ Sbjct: 179 VAAAMKTAGEDADSAKLIRLGLKELA 204 >gi|222086988|ref|YP_002545522.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84] gi|254766935|sp|B9J9J0|RUVA_AGRRK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221724436|gb|ACM27592.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84] Length = 204 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG IE + EDY L+DV GVCY+ YC RTLS LG +G+ C LF+ET++R+DQIRL Sbjct: 1 MIGKLKGTIEEIGEDYALVDVHGVCYVAYCSARTLSRLGSVGEACILFIETYVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQ+VQGVGA+VA+ +LS +T +EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMAVLEREWFNLLQTVQGVGAKVALALLSTLTPSELANAIALQDRTAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K + + + + K++ P+ +A+SAL NLGY +DQA A Sbjct: 121 AMRIVTELKNKVPAFAG---EATNIGFKQELGEGVAPAPVSDAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +K + AD +++IRL L+ +S Sbjct: 178 IAAAMKVAGDEADSAKLIRLGLKELS 203 >gi|238786430|ref|ZP_04630350.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia bercovieri ATCC 43970] gi|238712664|gb|EEQ04756.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia bercovieri ATCC 43970] Length = 196 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 5/196 (2%) Query: 11 GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70 VL++ GV Y + P+ L ++G +F + +R+D L+GF +R Sbjct: 2 EKQPPLVLLEANGVGYEVQLPMTCFYELPELGQEAIIFTQFIVREDAQLLYGFNDKQERA 61 Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K Sbjct: 62 LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121 Query: 131 KAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188 + L+ + + + + S A SALV LGY +A+ V + K Sbjct: 122 RFKGLNGDLFNNTGDITLPASSSSQLSDADIEAEAASALVALGYKPQEASRLVSKIAK-- 179 Query: 189 KNIADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 180 -PGADCETLIRDALRA 194 >gi|68248920|ref|YP_248032.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae 86-028NP] gi|81336669|sp|Q4QNM5|RUVA_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68057119|gb|AAX87372.1| holliday junction DNA helicase RuvA [Haemophilus influenzae 86-028NP] Length = 204 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|145634688|ref|ZP_01790397.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittAA] gi|145638774|ref|ZP_01794383.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittII] gi|148827465|ref|YP_001292218.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittGG] gi|260582589|ref|ZP_05850379.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127] gi|166230557|sp|A5UGC9|RUVA_HAEIG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145268233|gb|EDK08228.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittAA] gi|145272369|gb|EDK12277.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittII] gi|148718707|gb|ABQ99834.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittGG] gi|260094400|gb|EEW78298.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127] gi|301169022|emb|CBW28619.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus influenzae 10810] gi|309750264|gb|ADO80248.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus influenzae R2866] Length = 204 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|254000106|ref|YP_003052169.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4] gi|253986785|gb|ACT51642.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4] Length = 192 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + V+ID GV Y P+ T L +G+ L + +R+D L Sbjct: 1 MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +RQ F L V G+GA+ A+ +LS ++ +L +++ LQ + ++ ++PGI K Sbjct: 61 YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K V+ A S + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKDKF------------SVDGLTAPAGQPKSASGDVLNALLALGYNEREAMAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V K+ + IRLAL+++S Sbjct: 169 V----KQLPADVVVADGIRLALKSLS 190 >gi|15676189|ref|NP_273321.1| Holliday junction DNA helicase motor protein [Neisseria meningitidis MC58] gi|20455266|sp|Q9K1A2|RUVA_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|7225489|gb|AAF40719.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis MC58] gi|261391796|emb|CAX49251.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 8013] gi|316985194|gb|EFV64146.1| holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76] gi|325137090|gb|EGC59686.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M0579] gi|325139154|gb|EGC61700.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis ES14902] gi|325141101|gb|EGC63604.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis CU385] gi|325199468|gb|ADY94923.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76] gi|325202908|gb|ADY98362.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240149] gi|325207293|gb|ADZ02745.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis NZ-05/33] Length = 194 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|161870798|ref|YP_001599971.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 053442] gi|189045759|sp|A9M3B7|RUVA_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161596351|gb|ABX74011.1| Holliday junction DNA helicase [Neisseria meningitidis 053442] gi|308388484|gb|ADO30804.1| Holliday junction DNA helicase [Neisseria meningitidis alpha710] gi|325130991|gb|EGC53718.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis OX99.30304] gi|325131591|gb|EGC54298.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M6190] gi|325143104|gb|EGC65451.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 961-5945] gi|325143174|gb|EGC65520.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 961-5945] gi|325197549|gb|ADY93005.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis G2136] Length = 194 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|328542537|ref|YP_004302646.1| Holliday junction ATP-dependent DNA helicase ruvA [polymorphum gilvum SL003B-26A1] gi|326412283|gb|ADZ69346.1| Holliday junction ATP-dependent DNA helicase ruvA [Polymorphum gilvum SL003B-26A1] Length = 205 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 125/206 (60%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDHVVLDVHGVGYQVHCPSRVLQGLPRTGEAAVLFIETLVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+WF LL +VQGVGA+VA+ VL + A E+ +I L + I++ PG+ ++ Sbjct: 61 YGFAQEAEREWFRLLMTVQGVGAKVALAVLGVLKAGEIANAIALGDKATISRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +S+ ++ + + P A+SAL NLGY Q QA+ A Sbjct: 121 AERILAELKDKAPGYASIDADTLAVAQAVGDDVAARP--VAEAVSALTNLGYAQPQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V LK A +IRL LR ++ Sbjct: 179 VARALKAAGEAATTETLIRLGLRELA 204 >gi|73540190|ref|YP_294710.1| Holliday junction DNA helicase motor protein [Ralstonia eutropha JMP134] gi|90135661|sp|Q475R7|RUVA_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72117603|gb|AAZ59866.1| Holliday junction DNA helicase subunit RuvA [Ralstonia eutropha JMP134] Length = 193 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G TL + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + G+GAR+A+ VLS ++ +EL ++I LQ + + ++PGI K Sbjct: 61 YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVSELAQAITLQEAGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M ELKGK + A++ ++AL+ LGY + +A TA Sbjct: 121 AERLMLELKGKL-----------GAELGHAPGAAPVHDSAVDILNALLALGYSEKEAATA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191 >gi|15602842|ref|NP_245914.1| Holliday junction DNA helicase motor protein [Pasteurella multocida subsp. multocida str. Pm70] gi|13431841|sp|P57893|RUVA_PASMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|12721303|gb|AAK03061.1| RuvA [Pasteurella multocida subsp. multocida str. Pm70] Length = 204 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + +L+DVQGV Y + P+ + L IG LF +R+D L Sbjct: 1 MIGHLTGRLVEKHPPEILLDVQGVGYELLLPMTSFYQLPDIGQQTALFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVEEFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS-FAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S K+ H + A AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGIQQEDFFIESQHLKQPEHALNEQDIPASEAISALIALGYKAAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K Q+IR AL+A Sbjct: 181 LVKKISK---PALSSEQLIREALKA 202 >gi|251789856|ref|YP_003004577.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591] gi|247538477|gb|ACT07098.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591] Length = 205 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y ++ P+ L +G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLIEAGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ Q + ++PG+ K Sbjct: 61 FGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNADSDMALPAQTGEAAPQADPQAEAEAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V + AD +IR ALRA Sbjct: 181 RMVNKVSR---PGADCETLIRDALRA 203 >gi|325135068|gb|EGC57696.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M13399] Length = 194 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAH---------AVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|134299518|ref|YP_001113014.1| Holliday junction DNA helicase RuvA [Desulfotomaculum reducens MI-1] gi|172044284|sp|A4J536|RUVA_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134052218|gb|ABO50189.1| Holliday junction DNA helicase subunit RuvA [Desulfotomaculum reducens MI-1] Length = 199 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +V+IDV G+ Y + P T L +G LF +R+D I+ Sbjct: 1 MIAYIKGLLAADGPGWVVIDVNGIGYHVSIPSTT--QLPALGHEVKLFTHMSVREDGIQF 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F+LL +V GVG +VA+ V+S + + L +I +++ + ++PG+ K Sbjct: 59 FGFAKEDEKECFLLLLNVAGVGPKVALAVVSHLPPSNLRSAIAIEDVNQLVKVPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++V + A+ AL+ LGY Q +A A Sbjct: 119 AQRILLELKDKLKGMAAVEHSTL-------QQSVITTGSGDEAVEALLALGYSQGEARDA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V K D S +I++AL+ ++ Sbjct: 172 VKKAQKSAPE-EDLSALIKIALKELA 196 >gi|87118957|ref|ZP_01074855.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121] gi|86165348|gb|EAQ66615.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121] Length = 199 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DV GV Y + + T L IG+ TL+ +++D L Sbjct: 1 MIGRLVGYLVEKVPPELMLDVNGVGYELTASMTTFYELPAIGEKVTLYTHFQVKEDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +R F +L V GVG ++A+ VLS +++ EL+ ++ + + +IPG+ K Sbjct: 61 YAFKQKDERALFRILIKVNGVGPKMALSVLSSMSSDELIANVQDSDVTALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L +QD+ + + + P A +ALV+LGY +A A Sbjct: 121 AERLIIELRDK---LGQAAKQDLFATPEVLRQVQADP--RQEAEAALVSLGYKPQEAAKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + Q+I+ AL+ + Sbjct: 176 IAKVP---VSSDSSEQVIKSALKNM 197 >gi|329123663|ref|ZP_08252223.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus aegyptius ATCC 11116] gi|327469862|gb|EGF15327.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus aegyptius ATCC 11116] Length = 204 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIRLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V+K E Q+IR AL+A Sbjct: 181 MVKRVVKPE---LTSEQVIREALKA 202 >gi|325267123|ref|ZP_08133791.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella denitrificans ATCC 33394] gi|324981361|gb|EGC17005.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella denitrificans ATCC 33394] Length = 194 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + ++IDVQGV Y + ++T L G+ L+ + +R+D L Sbjct: 1 MIGRLHGILAEKQPPQIVIDVQGVGYEVEVSMQTFYTLPAAGEAVRLYTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS +++ EL +++ ++ K ++ +PGI K Sbjct: 61 FGFADAGERATFRQLIKVSGIGAKTALGILSALSSDELAQAVAQEDVKRLSSVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK S + + + L+ LGY + +A A Sbjct: 121 AERMILELRGKLAG---------SSAADTALFAAAAQDSRQDVVQTLMALGYSEKEAQAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 K + + + +R AL+ + Sbjct: 172 ----CKSLPDDVEVGEGVRQALKLM 192 >gi|116748437|ref|YP_845124.1| Holliday junction DNA helicase RuvA [Syntrophobacter fumaroxidans MPOB] gi|166231451|sp|A0LGY7|RUVA_SYNFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116697501|gb|ABK16689.1| Holliday junction DNA helicase subunit RuvA [Syntrophobacter fumaroxidans MPOB] Length = 197 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + DY++IDV GV YI+Y P+ T L GD L + TH+R+D I+L Sbjct: 1 MIGHLEGRLRHKAPDYIVIDVHGVGYIVYVPLSTFYDLPGPGDTVALNIHTHIREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ L +V GVG R+A+ +LS +T +L I+ Q + IPG+ KI Sbjct: 61 YGFRTVAEKDMFLRLITVNGVGPRLAVNILSGLTPDDLHRIILQQEGFRLKSIPGVGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K + + + + S +A SALVNLGY +A A Sbjct: 121 AERILLELRDKM---------SVKKGREAEQPAPAAESSYGDAYSALVNLGYRPAEAEKA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +K ++++ LR ++ Sbjct: 172 LGKAIKSLGADPPVEKLLKETLRLLA 197 >gi|294635834|ref|ZP_06714289.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685] gi|291090806|gb|EFE23367.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685] Length = 195 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 4/196 (2%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 I VL++ GV Y + P+ L + G +F +R+D L+GF + + Sbjct: 2 ILEKQPPQVLLEAGGVGYEVQMPMTCFYELPQPGSEAVIFTHFVVREDAQLLYGFNNKQE 61 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K A R++ E+ Sbjct: 62 RALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALIKLPGVGKKTAERLVVEM 121 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188 K + LS + + A + A++AL+ LGY +A+ V V Sbjct: 122 KDRFKGLSGDLFTPSDDL-PPSAQPQAQADAEGEAVAALIALGYKPQEASRLVNRVAS-- 178 Query: 189 KNIADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 179 -VGADSETLIRDALRA 193 >gi|148825408|ref|YP_001290161.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittEE] gi|229846401|ref|ZP_04466509.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 7P49H1] gi|166230556|sp|A5UAH7|RUVA_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148715568|gb|ABQ97778.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittEE] gi|229810494|gb|EEP46212.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 7P49H1] Length = 204 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|187925318|ref|YP_001896960.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans PsJN] gi|229560013|sp|B2SYK1|RUVA_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187716512|gb|ACD17736.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans PsJN] Length = 193 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++LID GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK A S A + ++AL+ LGY + +A TA Sbjct: 121 AERLLLELKGKI-----------GADLGAMAGAASASDHASDILNALLALGYSEKEALTA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V S+ I+LAL+A+S Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191 >gi|91216982|ref|ZP_01253945.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis ATCC 700755] gi|91184853|gb|EAS71233.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis ATCC 700755] Length = 193 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++++D G+ Y + + T S L K + T++ +++D L Sbjct: 1 MITQLRGRLLEKNPTHIVVDCNGIGYEVNISLHTFSRL-KGEEQITIYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F L SV G+GA A +LS +T ++VE+I ++S I I GI K Sbjct: 60 YGFMEKAERLVFRQLLSVSGIGANTARMMLSSLTPEQVVEAISTEDSDTIQSIKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K S + S A+SAL LGY + Q+ Sbjct: 120 AQRVILDLKDKI----------RSSEEYSEIVNTPSNSNKEEALSALETLGYTRKQSGKI 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A+ II+LAL+ + Sbjct: 170 ISKICNNNPD-ANVEDIIKLALKNL 193 >gi|167856020|ref|ZP_02478765.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus parasuis 29755] gi|167852859|gb|EDS24128.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus parasuis 29755] Length = 202 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 4/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +++DVQGV Y + P+ + L + + +F +R+D L Sbjct: 1 MIGRLCGRIIEKSPPSMVLDVQGVGYEVLMPMTSFYNLPDLNEDTMIFTHLVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R F L GVG ++A+ +LS ++ +E + +I + + +IPGI K Sbjct: 61 FGFVQKQERMLFRELIKTNGVGPKLALAILSAMSVSEFMSAIEQEELAKLIKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK +L + + P AI AL++LGY A Sbjct: 121 AERLLVELKGKFSTLFHHEISILQPSGNLLSMESMSP--VNEAIDALISLGYKAADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V +K + + Q+IR AL+ Sbjct: 179 VKKVNRK--SESTSEQLIREALK 199 >gi|304389092|ref|ZP_07371136.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria meningitidis ATCC 13091] gi|304336965|gb|EFM03155.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria meningitidis ATCC 13091] Length = 194 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|295091401|emb|CBK77508.1| Holliday junction DNA helicase subunit RuvA [Clostridium cf. saccharolyticum K10] Length = 248 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I I+G + + +++ G+ Y I+ P+ L L +G ++ +R+D + L+ Sbjct: 43 ISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSLY 102 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GFL+ DR+ F L V G+G + A+G+L + +L +I+ + K I++ PGI K A Sbjct: 103 GFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKTA 162 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQDQATTA 180 RI+ +LK K + S + S A A+ ALV LGY +A+ A Sbjct: 163 QRIILDLKDKVSAEEMFPSVTASDGGAKAPEAASLTAEAAREAVDALVALGYSNLEASKA 222 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V + D +++ +L+ ++ Sbjct: 223 VKQV--EVTEEMDAEAVLKASLKYLA 246 >gi|240017426|ref|ZP_04723966.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA6140] gi|240081568|ref|ZP_04726111.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA19] gi|240113847|ref|ZP_04728337.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae MS11] gi|240126556|ref|ZP_04739442.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae SK-92-679] gi|240129018|ref|ZP_04741679.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae SK-93-1035] gi|268597664|ref|ZP_06131831.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae FA19] gi|268599915|ref|ZP_06134082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae MS11] gi|268685136|ref|ZP_06151998.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-92-679] gi|268687398|ref|ZP_06154260.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-93-1035] gi|268551452|gb|EEZ46471.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae FA19] gi|268584046|gb|EEZ48722.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae MS11] gi|268625420|gb|EEZ57820.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-92-679] gi|268627682|gb|EEZ60082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-93-1035] Length = 194 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDRLFAASPAADETEDIVSTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|325203380|gb|ADY98833.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240355] Length = 194 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|297170981|gb|ADI21996.1| holliday junction resolvasome, DNA-binding subunit [uncultured myxobacterium HF0200_01L06] Length = 202 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +++DV GV Y + P+ T + L G +L+V TH+R+D L Sbjct: 1 MIARLEGTLFEKTPTRIVVDVSGVGYELSVPLSTFATLPDEGKTVSLWVHTHVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F LL VG R+A +LS I L +++ + KV+ +PGI K+ Sbjct: 61 YGFATTRERDVFHLLLRANRVGPRLAQTILSGIDPAALCDALGRGDVKVLRGVPGIGPKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ A L+ + + P A A+SAL+NLGY + +A Sbjct: 121 AERMVVELRDAASELAGALGSAGPSEGRP-----VRPDPAEEALSALLNLGYPRSKAERT 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + + + + A Q+IR ALR++S Sbjct: 176 IEAAIGETGEDASIEQVIRAALRSLSA 202 >gi|316932642|ref|YP_004107624.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris DX-1] gi|315600356|gb|ADU42891.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris DX-1] Length = 205 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGVIDSYGEDYVILDVHGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +LS+V + + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKVPALSNVDPAVVHLSGAIDDNTA--PRAVADAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A +Q+I+L L+ +S Sbjct: 179 VAAASRSAGEDAATAQLIKLGLKELS 204 >gi|145590058|ref|YP_001156655.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189045760|sp|A4T027|RUVA_POLSQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145048464|gb|ABP35091.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 193 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + ++ +L+D QGV Y I P+ TL L ++ TL +R+D +L Sbjct: 1 MIGRIQGTLVSVHPPRLLVDCQGVGYEIDVPMSTLYQLPEVNQKITLLTHFQVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++++R+ F L + GVG+R A+ VLS ++ EL ++I LQ + + Q+PGI K Sbjct: 61 FGFATEIEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELKGK + + + AL++LGY + +A A Sbjct: 121 AERLCLELKGKLAPDLGITGGKPQAI-----------EATSEVLQALLSLGYSEKEALLA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + S IR+ L+ +S Sbjct: 170 LKQI----PPETSVSDGIRMGLKYLS 191 >gi|313202065|ref|YP_004040723.1| holliday junction DNA helicase ruva [Methylovorus sp. MP688] gi|312441381|gb|ADQ85487.1| Holliday junction DNA helicase RuvA [Methylovorus sp. MP688] Length = 192 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + V+ID GV Y P+ T L +G+ L + +R+D L Sbjct: 1 MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +RQ F L V G+GA+ A+ +LS ++ +L +++ LQ + ++ ++PGI K Sbjct: 61 YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K V+ A S + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKDKF------------SVDGLAAPAGQAKSASGDVLNALLALGYNEREAMAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V K+ + IRLAL+++S Sbjct: 169 V----KQLPADVVVADGIRLALKSLS 190 >gi|299134170|ref|ZP_07027363.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2] gi|298590917|gb|EFI51119.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2] Length = 205 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 136/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y++ C RTL L G+ L +ET++R+DQIRL Sbjct: 1 MIGKLKGLIDSYGEDYVVLDVQGVGYLVSCSARTLQALPSPGEAAVLSIETYVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VLS + ++L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + +SV + + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFASVDPAVVHLASAVDDD--RAPGPVRDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S + A+ +++IRL L+ ++ Sbjct: 179 IASASRDAGEGAETTKLIRLGLKELA 204 >gi|268589737|ref|ZP_06123958.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131] gi|291314889|gb|EFE55342.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131] Length = 205 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N + + +M A +AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPSVNSKVPNMADIEAEAAAALIALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K + +D +IR ALRA Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203 >gi|121634135|ref|YP_974380.1| Holliday junction DNA helicase motor protein [Neisseria meningitidis FAM18] gi|166230574|sp|A1KRU4|RUVA_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120865841|emb|CAM09573.1| Holliday junction DNA helicase [Neisseria meningitidis FAM18] Length = 194 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAH---------AVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|86134376|ref|ZP_01052958.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp. MED152] gi|85821239|gb|EAQ42386.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp. MED152] Length = 193 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V+ID GV Y+++ + T S L + + L+ +R D L Sbjct: 1 MITQVRGRLVEKSPTEVVIDCNGVGYLLHISLNTFSGLPE-DENVVLYTHLSIRDDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R+ F LL SV GVG +A + S +T+ E+ ++I +N VI + GI K Sbjct: 60 FGFINKTEREVFKLLISVSGVGPSIARTMCSSMTSDEIQQAIASENVAVIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + N ++ + + + A+SAL LG+ + Q+ Sbjct: 120 AQRVIVDLKDKILK----------TFNIDEVSVSASNTNKDEALSALEVLGFNRKQSDKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VLK + A II+LAL+ + Sbjct: 170 VNTVLKANPD-ASVENIIKLALKNL 193 >gi|59802051|ref|YP_208763.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae FA 1090] gi|194099623|ref|YP_002002754.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae NCCP11945] gi|239999822|ref|ZP_04719746.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae 35/02] gi|240014978|ref|ZP_04721891.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI18] gi|240116581|ref|ZP_04730643.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID18] gi|240118805|ref|ZP_04732867.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID1] gi|240122047|ref|ZP_04735009.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID24-1] gi|240124344|ref|ZP_04737300.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID332] gi|254494604|ref|ZP_05107775.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 1291] gi|260439658|ref|ZP_05793474.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI2] gi|268595632|ref|ZP_06129799.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 35/02] gi|268602250|ref|ZP_06136417.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID18] gi|268604516|ref|ZP_06138683.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID1] gi|268682971|ref|ZP_06149833.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID332] gi|291042899|ref|ZP_06568640.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae DGI2] gi|293398091|ref|ZP_06642296.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62] gi|75355491|sp|Q5F636|RUVA_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560109|sp|B4RPG0|RUVA_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|59718946|gb|AAW90351.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA 1090] gi|193934913|gb|ACF30737.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae NCCP11945] gi|226513644|gb|EEH62989.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 1291] gi|268549021|gb|EEZ44439.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 35/02] gi|268586381|gb|EEZ51057.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID18] gi|268588647|gb|EEZ53323.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID1] gi|268623255|gb|EEZ55655.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID332] gi|291013333|gb|EFE05299.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae DGI2] gi|291611354|gb|EFF40424.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62] gi|317165112|gb|ADV08653.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae TCDC-NG08107] Length = 194 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAASPAADETEDIVSTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|192289700|ref|YP_001990305.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris TIE-1] gi|229560122|sp|B3QHS2|RUVA_RHOPT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|192283449|gb|ACE99829.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris TIE-1] Length = 205 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +LS+V + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKVPALSAVDPAVVKLSG--AIDDNRAPRAVTDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A+ +Q+I+L L+ +S Sbjct: 179 VATASRTAGEDAETAQLIKLGLKELS 204 >gi|16272267|ref|NP_438479.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae Rd KW20] gi|260581219|ref|ZP_05849038.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW] gi|1173330|sp|P44632|RUVA_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|1573280|gb|AAC21976.1| Holliday junction DNA helicase (ruvA) [Haemophilus influenzae Rd KW20] gi|260092144|gb|EEW76088.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW] Length = 204 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V V K E Q+IR AL+ Sbjct: 181 MVKRVAKPE---LTSEQVIREALK 201 >gi|209886413|ref|YP_002290270.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans OM5] gi|226698735|sp|B6JIZ6|RUVA_OLICO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209874609|gb|ACI94405.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans OM5] Length = 205 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 137/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y+++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGVIDSYGEDYVILDVQGVGYLVHCATRTLQALPSSGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VLS + ++L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + ++V + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDD--RAPRPVKDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + SV + A+ +Q+IRL L+ ++ Sbjct: 179 IASVARDAGEGAETAQLIRLGLKELA 204 >gi|261855148|ref|YP_003262431.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus c2] gi|261835617|gb|ACX95384.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus c2] Length = 206 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + ++L+DVQGV Y + P+ TL L G TL + T +R+D L Sbjct: 1 MIGRLKGILVNKQPPWILLDVQGVGYEVEVPLSTLFDLPANGQEATLLIHTVVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++R+ F L V GVGA++A+GVLS + A E +I + + ++PG+ K Sbjct: 61 YGFSREVERKLFRHLLKVTGVGAKLALGVLSGMNAEEFAGAIARNDIAALIRLPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + ++ + + + A+SAL LGY ++ Sbjct: 121 AERLVIEMRDRLAE-GFFDGATLATAAGKMGDVVPLAGADQEAMSALEALGYKPAESQRM 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V QIIRLAL+ + Sbjct: 180 VKAV--PGAETLPVEQIIRLALKPFA 203 >gi|288939916|ref|YP_003442156.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM 180] gi|288895288|gb|ADC61124.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM 180] Length = 211 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 9/212 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I + +L+DV GV Y + P+ T L +G+ TL +R+D L Sbjct: 1 MIGRLQGRILAKHPPQLLLDVNGVGYELEAPMSTFYGLPAVGETATLLTHLAVREDAWTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + DR F L V GVGAR+A+ +LS + A + + +++ + ++PGI K Sbjct: 61 YGFIRERDRALFRALIKVTGVGARMALAILSGMDAARFAQCVEQEDATALTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ------AHICSMPSFAINAISALVNLGYGQ 174 A R++ E++ + + + + A + + +A+SALV LGY Sbjct: 121 AERLIIEMRDRLGGVMIAPGAALPSAAGQPASGTTTADVVAEDQALADAVSALVALGYKP 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A +V + +IIR ALR+++ Sbjct: 181 PDANRMARAV---DDGAKTAEEIIRAALRSVN 209 >gi|261400495|ref|ZP_05986620.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC 23970] gi|269209755|gb|EEZ76210.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC 23970] Length = 194 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V AD + +RLAL+ + Sbjct: 172 VKGV----PKGADVGEGVRLALKNL 192 >gi|33152771|ref|NP_874124.1| Holliday junction DNA helicase motor protein [Haemophilus ducreyi 35000HP] gi|38372436|sp|Q7VKV4|RUVA_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33148995|gb|AAP96513.1| Holliday junction DNA helicase RuvA [Haemophilus ducreyi 35000HP] Length = 201 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQG+ Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLYGKIIEKQPPEMVIDVQGIGYEVLLPMTSFYHLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + ++ + + +IPG+ K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVVQFANAVENEELVKLTKIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + Q D + + + + + A AL+ LGY A Sbjct: 121 AERLLVELKGK---FKGIAQTDFFVEHSHETMVATYEIDASEEARDALLALGYKLTDAEK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V K+ A Q+IR AL+A Sbjct: 178 MIKKV---HKSGATSEQLIRDALKA 199 >gi|91785164|ref|YP_560370.1| Holliday junction DNA helicase motor protein [Burkholderia xenovorans LB400] gi|296157351|ref|ZP_06840187.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1] gi|123358465|sp|Q13UC1|RUVA_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91689118|gb|ABE32318.1| DNA recombination protein, RuvA [Burkholderia xenovorans LB400] gi|295892687|gb|EFG72469.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1] Length = 193 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKGKI-----------GADLGAMAGAASASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V S+ I+LAL+A+S Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191 >gi|242239574|ref|YP_002987755.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703] gi|242131631|gb|ACS85933.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703] Length = 204 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y ++ P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLIEAAGVGYEVHMPMTCFYELPELGQESVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVFAVEREEIGALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + S ++ A P A +ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLNGDLFTAASDISLPATAGKADEPDPQAEAEAALVALGYKPQEAAR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V + + AD +IR ALRA Sbjct: 181 MVSKVARPD---ADCETLIREALRA 202 >gi|331663357|ref|ZP_08364267.1| holliday junction DNA helicase RuvA [Escherichia coli TA143] gi|331059156|gb|EGI31133.1| holliday junction DNA helicase RuvA [Escherichia coli TA143] Length = 188 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 3/188 (1%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 VLI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 VLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 61 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 62 KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 121 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + + + + A++ALV LGY +A+ V + + + A Sbjct: 122 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSET 178 Query: 197 IIRLALRA 204 +IR ALRA Sbjct: 179 LIREALRA 186 >gi|39934175|ref|NP_946451.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris CGA009] gi|81563776|sp|Q6NAT0|RUVA_RHOPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|39648023|emb|CAE26543.1| RuvA; Holliday branch migration protein [Rhodopseudomonas palustris CGA009] Length = 205 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +LS+V + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKVPALSAVDPAVVKLSG--AIDDNRAPRAVADAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A+ +Q+I+L L+ +S Sbjct: 179 VATASRTAGEDAETAQLIKLGLKELS 204 >gi|119477229|ref|ZP_01617465.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2143] gi|119449592|gb|EAW30830.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2143] Length = 202 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+DV GV Y I P+ T+ L ++G L +R+D L Sbjct: 1 MIGRITGVLLEKQAPELLVDVNGVGYEIQAPMTTIYQLPEVGQVVVLHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L V GVG ++A+ +LS I E V + ++ + ++PG+ K Sbjct: 61 YGFAELQERRLFRALIKVNGVGPKLALTILSGIETDEFVRCVRDGDTLSLVRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + Q D + + S A SAL+ LGY +A Sbjct: 121 AERLLVEMKDRLKDW----QIDSITDEFRVSGMGFSNSITAEAESALIALGYKPQEAAK- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ Q+IR AL+ + Sbjct: 176 -AIAAANNDSMTSSEQLIRAALKNM 199 >gi|157371017|ref|YP_001479006.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568] gi|167012663|sp|A8GFI8|RUVA_SERP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157322781|gb|ABV41878.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568] Length = 203 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L+ + + S + A + A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPTAAQAAELDAEAEAASALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 VSKIAK---PGADCETLIRDALRA 201 >gi|291550303|emb|CBL26565.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus torques L2-14] Length = 202 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + E +++ G+ Y IY +TLS L +G+ + ++R+D ++L Sbjct: 1 MISYIRGELAAVQEQKAIVEAGGIGYGIYMSQQTLSMLPAVGEEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D Q F LL V G+G + + +LS ++ EL +++ + K I+ PGI K Sbjct: 61 YGFLTGEDLQVFRLLIGVSGIGPKAGLNILSCLSPDELRFAVLAGDVKTISSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K S+ V++Q + + + A+ AL LGYG ++ A Sbjct: 121 AEKLILELKDKM-SIEDVLEQAAHGGEQSKEIEATDTGMQAEAVQALTALGYGSAESLRA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + A ++R AL+ + Sbjct: 180 VKKV---SVDCASVEDLLREALKNL 201 >gi|253688206|ref|YP_003017396.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495651|sp|C6DFF1|RUVA_PECCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|251754784|gb|ACT12860.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 205 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPASAESRASDPEAEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + E AD +IR ALRA Sbjct: 181 RMISKIARPE---ADCETLIRDALRA 203 >gi|260060653|ref|YP_003193733.1| Holliday junction DNA helicase RuvA [Robiginitalea biformata HTCC2501] gi|88784783|gb|EAR15952.1| Holliday junction DNA helicase motor protein [Robiginitalea biformata HTCC2501] Length = 193 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +++I+ GV Y + + T S L + ++ +R+D L Sbjct: 1 MIEHLTGRLIEKHPTHLVIECAGVGYFVNISLNTFSALPDE-EQLRIYTHLQVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R+ F LL SV GVGA A +LS +T +L E+I + I + GI K Sbjct: 60 FGFYSVAEREAFRLLISVSGVGASTARTMLSSMTPAQLREAIASGDVPAIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ K + + + + + N + A+SAL LGY + Q+ A Sbjct: 120 AQRVILDLRDKILKIYDLDEVSLKPDNTNK----------EEALSALEVLGYSRKQSEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL+++ + A II+ L+ + Sbjct: 170 VDTVLRQDPS-ASVEGIIKQTLKNL 193 >gi|319896645|ref|YP_004134838.1| holliday junction DNA helicase ruva [Haemophilus influenzae F3031] gi|317432147|emb|CBY80498.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3031] Length = 204 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKLVAKPE---LTSEQVIREALKA 202 >gi|146338241|ref|YP_001203289.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. ORS278] gi|166230522|sp|A4YMC6|RUVA_BRASO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146191047|emb|CAL75052.1| Holliday junction DNA helicase ruvA [Bradyrhizobium sp. ORS278] Length = 205 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK++G I+ ED+V+IDV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLRGLIDSYAEDFVIIDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VL + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLGNAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + ++V + P +AISAL+NLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFANVDPGVVRLSG--AIEESRAPQPVADAISALINLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A+ +Q+IRL L+ ++ Sbjct: 179 IAAASRAAGDKAETAQLIRLGLKELA 204 >gi|254805692|ref|YP_003083913.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] gi|254669234|emb|CBA08082.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] Length = 194 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|313669264|ref|YP_004049548.1| Holliday junction DNA helicase [Neisseria lactamica ST-640] gi|313006726|emb|CBN88196.1| Holliday junction DNA helicase [Neisseria lactamica 020-06] Length = 194 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + V S + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAHT---------VTDGLFAAPSENDETNDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|325128974|gb|EGC51825.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis N1568] Length = 194 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIIIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAH---------AVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|222149652|ref|YP_002550609.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4] gi|254766936|sp|B9JRI6|RUVA_AGRVS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221736634|gb|ACM37597.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4] Length = 205 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + +D+VL+DV GVCY+ +C RTL+ LG G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGDDHVLVDVHGVCYVAHCSSRTLARLGSPGEAIVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S L+R+WF LLQSVQGVGA+VA+ +L+ +T +EL +I LQ+ IA+ PG+ K+ Sbjct: 61 FGFMSALEREWFNLLQSVQGVGAKVALAILATLTPSELANAIALQDKPAIARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK KA + + + + + S P +A+SAL NLGY +DQA A Sbjct: 121 ALRLVTELKNKAPAFTGDAGSAIGLKQELGEGVASAP--VSDAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + LK AD +++IRL L+ +S Sbjct: 179 IAAALKNGGEGADSAKLIRLGLKELS 204 >gi|309972527|gb|ADO95728.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus influenzae R2846] Length = 204 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K Q+IR AL+A Sbjct: 181 MVKRVAK---PALTSEQVIREALKA 202 >gi|148258116|ref|YP_001242701.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. BTAi1] gi|166230521|sp|A5ERK1|RUVA_BRASB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146410289|gb|ABQ38795.1| Holliday junction DNA helicase subunit RuvA [Bradyrhizobium sp. BTAi1] Length = 205 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYAEDFVILDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VL + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + V + + P +AISAL+NLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFADVDPGVIRLSGAIED--SRAPQPIADAISALINLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A+ +Q+IRL L+ ++ Sbjct: 179 IAAASRAAGDKAETAQLIRLGLKELA 204 >gi|261379647|ref|ZP_05984220.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703] gi|284798132|gb|EFC53479.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703] Length = 194 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL ++I ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSTMNADELAQAIAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S + V+ ++ + + I+ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVSHT---------VSDGLFAPDAVADESQDIINTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192 >gi|225568080|ref|ZP_03777105.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM 15053] gi|225163033|gb|EEG75652.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM 15053] Length = 205 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + ED V++DV GV Y IY +++S L G + ++++D ++L Sbjct: 1 MISYIRGELAAVEEDKVIVDVGGVGYGIYMSGQSMSLLPSAGREVKIHTYLNVKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F L+ V G+G + +G+LS ++ +L ++I + K I PGI K Sbjct: 61 FGFLTRDDLDIFRLIIGVNGIGPKGGLGILSALSPDDLRFAVISNDVKAIQAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + N A S+ A+ ALV LGYG ++ A Sbjct: 121 AEKLILELKDKLRIEDVLEHAAHGSENTSAAAAASVNEVQSEAVQALVALGYGSTESLKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + + +++ AL+ + Sbjct: 181 VKQV--EIAEHMEVEDVLKSALKHM 203 >gi|307130888|ref|YP_003882904.1| component of RuvABC resolvasome, regulatory subunit [Dickeya dadantii 3937] gi|306528417|gb|ADM98347.1| component of RuvABC resolvasome, regulatory subunit [Dickeya dadantii 3937] Length = 205 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y ++ P+ L +G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLIEASGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ Q + ++PG+ K Sbjct: 61 FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN--AISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + +A + P A +ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPEAAGKAEPEADPQAEAEAALVALGYKPQEAG 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V + AD +IR ALRA Sbjct: 181 RMVSKVAR---PGADCETLIREALRA 203 >gi|270157092|ref|ZP_06185749.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968] gi|289164497|ref|YP_003454635.1| holliday junction DNA helicase [Legionella longbeachae NSW150] gi|269989117|gb|EEZ95371.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968] gi|288857670|emb|CBJ11513.1| holliday junction DNA helicase [Legionella longbeachae NSW150] Length = 198 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G+I ++++V GV Y + + T L + L + T +R+D + Sbjct: 1 MIGWLDGHIVDKYQPGKLVLNVHGVGYDVETSLNTFFKLDTLNGSVGLHIHTIVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R+ F L V GVG ++AM +LS IT E +E I +N+ + ++PGI K Sbjct: 61 LYGFLDRQERELFRALIKVNGVGPKLAMSILSSITPNEFIECIQQENAVFLMKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ S E S A+SAL LGY +A Sbjct: 121 TAERLVVEMRDSLKQF--------SVPCSESLKSDHRMSDQDEAVSALEVLGYKPQEALK 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AV V + Q+IR AL+ ++ Sbjct: 173 AVKKV---NDGVKSCEQLIRDALQVLAA 197 >gi|319409331|emb|CBI82975.1| holliday junction DNA helicase RuvA [Bartonella schoenbuchensis R1] Length = 211 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 127/207 (61%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + +D++++DVQGV Y ++ R LS L +G+ LF+ETH+R + IRL Sbjct: 1 MIGKLKGILDSICDDHIILDVQGVGYSVFVSNRLLSSLPTLGEHLNLFIETHVRAEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I + PGI K+ Sbjct: 61 FGFTTKAERDWFCLLQNVPGVGAKVALAILGTLSPGELAQAIALNDVAMIKRAPGIGQKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++E K KA+ + + + QA + P +A+SAL LG+ +DQA A Sbjct: 121 SERIISEFKNKALPFNEESKNTAHLASNLQAQETNQP--VNDALSALTKLGFDRDQAAQA 178 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + L E+ + +IR +L+ +S Sbjct: 179 LSCALSSLEEETVSSALLIRHSLKLLS 205 >gi|283796454|ref|ZP_06345607.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1] gi|291075862|gb|EFE13226.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1] Length = 248 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 7/208 (3%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I I+G + + +++ G+ Y I+ P+ L L +G ++ +R+D + L+ Sbjct: 43 ISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSLY 102 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GFL+ DR+ F L V G+G + A+G+L + +L +I+ + K I++ PGI K A Sbjct: 103 GFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKTA 162 Query: 122 SRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 RI+ +LK K + L+SV D E A + + A A+ ALV LGY +A+ Sbjct: 163 QRIILDLKDKVSAEEILASVTASDGGAKAPEAASLTA--EAAREAVDALVALGYSNLEAS 220 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V + D +++ +L+ ++ Sbjct: 221 KAVKQV--EVTEEMDAEAVLKASLKYLA 246 >gi|226942024|ref|YP_002797098.1| RuvA [Laribacter hongkongensis HLHK9] gi|254766965|sp|C1D5S2|RUVA_LARHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226716951|gb|ACO76089.1| RuvA [Laribacter hongkongensis HLHK9] Length = 202 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +L+D GV Y + P+ T L + + L+ +R+D L Sbjct: 1 MIGRLSGTLLEKHPPQILVDAGGVGYEVDVPMSTFCRLPGLNEPVVLWTHMAVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F L + GVG ++A+ +LS + EL ++ ++ K ++++PGI K Sbjct: 61 FGFAGRAERELFRQLIRISGVGGKLALALLSSLEPDELARAVAQEDIKTLSRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK SL S +S A + + AL LGY +A A Sbjct: 121 AERLILELRGKLGSLPS--ADLLSPAPAAGAALLVENDERADISQALQALGYSAREAEAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + SV + D + IRLAL+A++ Sbjct: 179 LKSV----PDGTDVATGIRLALKALA 200 >gi|212711936|ref|ZP_03320064.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM 30120] gi|212685458|gb|EEB44986.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM 30120] Length = 205 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + +S ++ ++ S A +AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNSVSDIDLPSVKSQGPSQADIEAEAAAALIALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K + +D +IR ALRA Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203 >gi|228473784|ref|ZP_04058529.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC 33624] gi|228274805|gb|EEK13628.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC 33624] Length = 196 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + Y++ID GV Y + + T S L ++ +++D L Sbjct: 1 MITHLQGRLVEKTPTYLVIDCNGVGYWVNISLHTFSQLSDT-QQLKIYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV GVGA A +LS ++ +L +I+ + + I + GI K Sbjct: 60 FGFFDKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNSDVRTIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + L+ N PS A++AL LGY + A Sbjct: 120 AQRIILDLKEKMVKLTG--------DNASLVAASQSPSNKEEALAALEVLGYPRKAAEAV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L + Q+I+ AL+ + Sbjct: 172 VNKILTQSGQEFSVEQLIKQALKQL 196 >gi|227329529|ref|ZP_03833553.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 205 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPATADSRVGEPEAEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + + AD +IR ALRA Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203 >gi|91978630|ref|YP_571289.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris BisB5] gi|123735096|sp|Q130V1|RUVA_RHOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91685086|gb|ABE41388.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris BisB5] Length = 205 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDYVILDVHGVGYQVHCSSRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDHEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK K +LS+V + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVSELKDKVPALSNVDPAVVQLSG--ALDDNRAPRPVTDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A +Q+I+L L+ +S Sbjct: 179 IAAAARAAGDDAATAQLIKLGLKELS 204 >gi|218768952|ref|YP_002343464.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis Z2491] gi|20455265|sp|Q9JSM5|RUVA_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|121052960|emb|CAM09314.1| Holliday junction DNA helicase [Neisseria meningitidis Z2491] gi|254671573|emb|CBA09225.1| holliday junction DNA helicase [Neisseria meningitidis alpha153] gi|319411250|emb|CBY91657.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis WUE 2594] Length = 194 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVAH---------AVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|197301661|ref|ZP_03166731.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC 29176] gi|197299101|gb|EDY33631.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC 29176] Length = 205 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + E ++DV GV Y IY P + LS L +G + ++R+D ++L Sbjct: 1 MISYIRGELCDIEEQKAIVDVNGVGYGIYMPQQALSLLPPMGQQVKIHTYLNIREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL V G+G + + +LS ++ EL +++ ++K I+ PGI K Sbjct: 61 FGFLTKEDLNVFRLLIGVNGIGPKAGLNILSCLSPDELRFAVLSGDAKAISATPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--FAINAISALVNLGYGQDQAT 178 A +++ ELK K + +++ A S A+ AL LGYG ++ Sbjct: 121 AEKLILELKDKLNIEDMLEHAAHGGDSEDLASGTDTASNTMQAEAVQALTALGYGSAESL 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV K + I++ AL+ + Sbjct: 181 RAVK---KSSPECSSVEDILKEALKFL 204 >gi|261365694|ref|ZP_05978577.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996] gi|288565789|gb|EFC87349.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996] Length = 194 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGRLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS ++A EL ++ ++ K ++ PGI K Sbjct: 61 FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S ++ + ++ + ++ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVSHATADGLFAATPAADET---------DDIVNTLIALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + +RLAL+ + Sbjct: 172 IKGI----PKGTEVGEGVRLALKNL 192 >gi|255066950|ref|ZP_05318805.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256] gi|255048775|gb|EET44239.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256] Length = 194 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS ++A EL ++ ++ K ++ PGI K Sbjct: 61 FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S ++ + ++ + ++ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVSHAAADGLFAAAPAADET---------DDIVNTLIALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + +RLAL+ + Sbjct: 172 IKGI----PKGTEVGEGVRLALKNL 192 >gi|33594301|ref|NP_881945.1| Holliday junction DNA helicase motor protein [Bordetella pertussis Tohama I] gi|33602977|ref|NP_890537.1| Holliday junction DNA helicase motor protein [Bordetella bronchiseptica RB50] gi|44888431|sp|Q7VTT9|RUVA_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|44888438|sp|Q7WGB6|RUVA_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33564376|emb|CAE43681.1| holliday junction DNA helicase [Bordetella pertussis Tohama I] gi|33568608|emb|CAE34366.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50] gi|332383712|gb|AEE68559.1| Holliday junction DNA helicase RuvA [Bordetella pertussis CS] Length = 190 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV GV Y I P+ TL L + G TLF +R+D L Sbjct: 1 MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ EL ++I LQ + + ++PGI K Sbjct: 61 YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A + + ++AL+ LGY ++ A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAASGHQSDILNALLALGYSDKESQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LKK + D S+ IRLAL+A+ Sbjct: 168 ----LKKLPDGVDVSEGIRLALKAL 188 >gi|50121417|ref|YP_050584.1| Holliday junction DNA helicase RuvA [Pectobacterium atrosepticum SCRI1043] gi|81644878|sp|Q6D4A1|RUVA_ERWCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49611943|emb|CAG75392.1| holliday junction DNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 205 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNSVSDIPLTSPANVDNRVGEPEAEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + + AD +IR ALRA Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203 >gi|85714394|ref|ZP_01045382.1| Holliday junction DNA helicase motor protein [Nitrobacter sp. Nb-311A] gi|85698841|gb|EAQ36710.1| Holliday junction DNA helicase motor protein [Nitrobacter sp. Nb-311A] Length = 205 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 134/206 (65%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQSVQGVGARVA+ VL ++ +L ++ L++ +A+ PG+ K+ Sbjct: 61 FGFRTDHEREWFRLLQSVQGVGARVALAVLGTLSPADLASAVALRDKASVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA S ++V + V P +AISALVNLGYGQ QAT A Sbjct: 121 AERIVTELKDKAPSFANVDPAVVHLVG--AVDDRRAPGPVTDAISALVNLGYGQPQATAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + A+ +Q+IRL L+ ++ Sbjct: 179 IAAAARGAGENAETAQLIRLGLKELA 204 >gi|213963573|ref|ZP_03391826.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena Capno] gi|213953853|gb|EEB65182.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena Capno] Length = 194 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +V+ID GV Y + + T S L + G+ L+ +++D L Sbjct: 1 MITQLQGKLIEKNPTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA + +II + I + GI K Sbjct: 60 YGFLTKAEREVFVLLLSVSGVGASTARTMLSSLTAAHVRSAIINGDVATIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L E+ I ++ + A++AL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDF----------EEVSINTLNTNKEEALAALEVLGFVRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++K +II+ AL+ + Sbjct: 170 VDTIVKLNNEELSVEEIIKQALKRL 194 >gi|323186363|gb|EFZ71713.1| holliday junction DNA helicase RuvA [Escherichia coli 1357] Length = 187 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 3/187 (1%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 LI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 62 TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 + + + + A++ALV LGY +A+ V + + + A + Sbjct: 122 DLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSETL 178 Query: 198 IRLALRA 204 IR ALRA Sbjct: 179 IREALRA 185 >gi|255320811|ref|ZP_05361986.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens SK82] gi|262379413|ref|ZP_06072569.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens SH164] gi|255302188|gb|EET81430.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens SK82] gi|262298870|gb|EEY86783.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens SH164] Length = 200 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L V GVG ++A+G+LS ++ LV +I + + +IPG+ K Sbjct: 60 YGFSNAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDLNTLVKIPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ + + + Q S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKTLAQAATTSSTALPQIQF---IANSPIAEAEAALQSLGYKPQEAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + + ++ + +IR AL+++ Sbjct: 177 VAAV---KGDFSESADLIRAALKSM 198 >gi|56477680|ref|YP_159269.1| Holliday junction DNA helicase RuvA [Aromatoleum aromaticum EbN1] gi|81357290|sp|Q5P2U6|RUVA_AZOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56313723|emb|CAI08368.1| Holliday junction DNA helicase [Aromatoleum aromaticum EbN1] Length = 199 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +++D GV Y I P+ T L G+ +LF +R+D L Sbjct: 1 MIGRITGILLEKNPPQIVVDTHGVGYEIDVPMSTFYGLPATGESLSLFTHLAIREDGHFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ ++L +++ LQ + + +IPGI K Sbjct: 61 YGFASADERAAFRQLLKVSGIGARTALSVLSGLSVSDLAQAVALQETGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + ++AL+ LGY +A +A Sbjct: 121 AERLLLELRDKLGR-----ALPGFGASTVPGAAAQPADSRSDILNALLALGYSDKEAQSA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ S IR AL+ +S Sbjct: 176 LKAI----PPETGVSDGIRQALKLLS 197 >gi|160896673|ref|YP_001562255.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1] gi|229560027|sp|A9BUG7|RUVA_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160362257|gb|ABX33870.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1] Length = 190 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G +L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCGGVGYEVQVPMSTFYNLPASGAKVSLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + G+G R+A+ VLS ++ +L +++ LQ + ++PGI K Sbjct: 61 YGFGTHSERQAFRELIKITGIGPRMALSVLSGMSVEDLAQAVTLQEVGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + A + + + + AL+ LGY A A Sbjct: 121 AERLLLELKGKIGADTG-------------AQSLFVNNDQNDIVQALMALGYSDKDAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LKK ++ I+LAL+A++ Sbjct: 168 ----LKKLPPDVGVTEGIKLALKALA 189 >gi|226945719|ref|YP_002800792.1| Holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ] gi|226720646|gb|ACO79817.1| holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ] Length = 204 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + ++L++ GV Y + P+ TL L + + TL +R+D L+ Sbjct: 5 IGRLRGILVEKQPPHLLVEANGVGYEVEVPMTTLYRLPSLNEPVTLHTHLVVREDAHLLY 64 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R+ F L + GVG ++A+ ++S + ELV + + K + ++PG+ K A Sbjct: 65 GFCERRERELFRELIRLNGVGPKLALALMSSLELDELVRCVQAGDIKALTRVPGVGKKTA 124 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK + + S+ ++ + E + S +A+SALV LG+ +A+ AV Sbjct: 125 ERLLIELKDRFKAWESLP--TVASLTLESNPDIGIASAESDALSALVALGFKPQEASRAV 182 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 +V ++ ++IR ALR ++ Sbjct: 183 AAV---QEEGLSSEELIRRALRGMA 204 >gi|281601276|gb|ADA74260.1| Holliday junction ATP-dependent DNA helicase ruvA [Shigella flexneri 2002017] gi|332766837|gb|EGJ97038.1| holliday junction DNA helicase RuvA [Shigella flexneri 2930-71] Length = 187 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 3/187 (1%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 LI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 62 TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 + + + + A++ALV LGY +A+ V + + + + Sbjct: 122 DLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPD---TSSETL 178 Query: 198 IRLALRA 204 IR ALRA Sbjct: 179 IREALRA 185 >gi|88811437|ref|ZP_01126692.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis Nb-231] gi|88791326|gb|EAR22438.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis Nb-231] Length = 203 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LIDVQGV Y + P+ T L G+ TL +++D L Sbjct: 1 MIGRLRGILLEKQPPRLLIDVQGVGYEVEAPMSTFYELPAQGEAITLRTHLAIKEDGHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R F L V GVG ++A+ LS + E + + +++ + ++PG+ K Sbjct: 61 YGFHTEQERALFRSLIRVSGVGPKMALAFLSGMRTEEFLWCVRQRDTAALIRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + +L++ Q + + A+SAL+ LGY +A Sbjct: 121 AERLIVEMQDRLSALAT---QASTAAGASFSAAGGANEAFTEAMSALLALGYKTPEAQQL 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + E ++IRLALR Sbjct: 178 LAGLAEAE---LSSEELIRLALRK 198 >gi|261343863|ref|ZP_05971508.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM 4541] gi|282568250|gb|EFB73785.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM 4541] Length = 205 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPDIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + +S ++ ++ S A +AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNPISDIDLPSVKSKGPSQADIEAEAAAALIALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K + +D +IR ALRA Sbjct: 181 RMVSKVAKPD---SDSETLIRDALRA 203 >gi|305665237|ref|YP_003861524.1| Holliday junction DNA helicase motor protein [Maribacter sp. HTCC2170] gi|88709990|gb|EAR02222.1| Holliday junction DNA helicase motor protein [Maribacter sp. HTCC2170] Length = 193 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +V+I+ GV Y + + T S L + + +L+ +++D L Sbjct: 1 MITHLKGKLVEKNPTHVIIECAGVGYFVNISLHTFSNLKDV-ENISLYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+G+ A +LS ++ ++ ++I + I I GI K Sbjct: 60 FGFAEKSEREIFRLLLSVSGIGSSTARTMLSSLSPAQIRDAIANGDVATIQGIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ K + + + ++ + S + A+SAL LG+ + QA Sbjct: 120 AQRVILDLRDKILKVYDI----------DEVSLSSNNTNKEEALSALEVLGFARRQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL ++ ++ II+ AL+ + Sbjct: 170 VDKVLSQDSSL-SVENIIKHALKNL 193 >gi|153855299|ref|ZP_01996465.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814] gi|149752298|gb|EDM62229.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814] Length = 204 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +EG+ ED V++DV GV Y IY + L +G + H+++D ++L Sbjct: 1 MITYIRGILEGMEEDKVIVDVGGVGYGIYMAGTAMGRLPALGKEVKIHTHLHVKEDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F LL V G+G + +G+LS + +L ++ + K I PGI K Sbjct: 61 YGFLTRDELRVFRLLIGVSGIGPKGGLGILSALGPDDLRFAVASNDVKAIQAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K ++ + N A+ ALV LGYG +A A Sbjct: 121 AEKLILELKDKLKLEDALENAANAVQNTADTSAGMANEMTGEAVQALVALGYGNTEALKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V E+ ++R +L+ + Sbjct: 181 VRQVEITEE--MSVEDVLRQSLKYM 203 >gi|253997451|ref|YP_003049515.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8] gi|253984130|gb|ACT48988.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8] Length = 192 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +LID GV Y P+ T L IGD + +R+D L Sbjct: 1 MIGRLSGTLLEKTPPLILIDCNGVGYECEVPMSTFYNLPAIGDKVVMLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GA+ A+ +LS ++ +LV+++ LQ ++ ++PG+ K Sbjct: 61 YGFGTSQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVALQEPSMLTRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ +N+ Q S + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKDKF------TIDGVAAMNEPQTK-----SATSDVLNALLALGYNEREAVAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +L KE ++ D I+ AL+ +S Sbjct: 170 V-KLLDKEISVTDG---IKQALKLLS 191 >gi|294141122|ref|YP_003557100.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12] gi|293327591|dbj|BAJ02322.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12] Length = 205 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 106/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGLLIEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +T+ E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTSAEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + + + +AI+ L+ LGY QA+ Sbjct: 121 AERLLIEMRDKLKSLMEASAGSEREFMLKTNYTPTKIVNTAEEDAIAVLLALGYKSAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K + ++I+ +L+++ Sbjct: 181 KSVSAAYK---DGMTSEELIKSSLKSM 204 >gi|237746839|ref|ZP_04577319.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes HOxBLS] gi|229378190|gb|EEO28281.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes HOxBLS] Length = 193 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D QGV Y I P+ T L +G+ TLF +R+D L Sbjct: 1 MIGRIHGTLLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGENVTLFTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + G+GAR+A+ +LS ++ E+ +++ LQ++ + +IPGI K Sbjct: 61 YGFGSLDERTLFRQLVRITGIGARIALALLSGLSVAEMAQAVALQDATRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK S S A + +AL+ LGY + + TA Sbjct: 121 AERLLLELKGKFDSASLT-----------AAPSAVSNDSMTDIQNALLALGYSEKETLTA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S I++AL+ +S Sbjct: 170 IKQI----PADCNVSDGIKMALKTLS 191 >gi|238898994|ref|YP_002924676.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259495647|sp|C4K7I5|RUVA_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229466754|gb|ACQ68528.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 204 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 107/205 (52%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG I ++L+D+QG+ Y I P+ L ++G +F +R+D L Sbjct: 1 MISRMKGIILEKQPPWILLDIQGMGYDIQLPMTCFYQLPELGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++ + +LS +++ E + ++ ++ + ++PG+ K Sbjct: 61 YGFHHPKERAMFSELIKVNGVGPKLGLAILSGMSSEEFICALEKEDISNLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + +L+ ++ + + + S S AISAL++LGY +A Sbjct: 121 AERLLVEMKDRIKNLNKNLFKSTADHMLSSVSTDLSAKSAEAEAISALISLGYKPQEAAQ 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + ++ + + D +I+ ALR+ Sbjct: 181 LIKNIAQPD---LDSQALIKHALRS 202 >gi|317048520|ref|YP_004116168.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b] gi|316950137|gb|ADU69612.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b] Length = 204 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VLI+ GV Y ++ P+ L ++ +F + +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLIEAHGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + V+ ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAVLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDNAFTLTTPSAAPENNDAEAEAVAALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + + + AD +IR ALRA Sbjct: 181 MVSKIGRPD---ADCETLIREALRA 202 >gi|291612984|ref|YP_003523141.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus ES-1] gi|291583096|gb|ADE10754.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus ES-1] Length = 192 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DVQGV Y + P+ T L + + L + +R+D L Sbjct: 1 MIGRLSGTLLEKNPPQIVLDVQGVGYEVDVPMSTFYNLPALHEKVVLHTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R F L + GVG ++A+ VLS ++ +L ++ +++ + +IPG+ K Sbjct: 61 FGFLTHEERVAFRQLLKISGVGPKLALSVLSGLSLADLALAVANKDASRLTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + S+PS + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELQGKFAVAGAGAM------------AGSVPSSSSDIVNALLGLGYNEKEADWA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 K+ A + IR AL+ +S Sbjct: 169 ----AKQLPKEAGVADGIRQALKLLS 190 >gi|332285258|ref|YP_004417169.1| Holliday junction DNA helicase motor protein [Pusillimonas sp. T7-7] gi|330429211|gb|AEC20545.1| Holliday junction DNA helicase motor protein [Pusillimonas sp. T7-7] Length = 192 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV GV Y I P+ TL L G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKTPPIVCVDVGGVGYEIDVPMSTLYDLPDNGATITLYTHLAVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R F L V G+GAR A+ VLS ++ EL +I Q + ++ ++PGI K Sbjct: 61 YGFLSSKERSAFRALIKVTGIGARTALAVLSGMSVDELANAITQQETGLLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ + + ++AL++LGY + A Sbjct: 121 AERLLLELRGKLG-------------GDLAHGAGTVAAGRDDILNALLSLGYSNSETQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK D ++ IRLAL++++ Sbjct: 168 ----LKNLPEGVDVAEGIRLALKSLA 189 >gi|190575569|ref|YP_001973414.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia K279a] gi|254522833|ref|ZP_05134888.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14] gi|229560132|sp|B2FRN6|RUVA_STRMK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190013491|emb|CAQ47126.1| putative Holliday junction DNA helicase [Stenotrophomonas maltophilia K279a] gi|219720424|gb|EED38949.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14] Length = 197 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L ++G TL+ ++D + L Sbjct: 1 MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E + + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A + + +A AL LGY +A Sbjct: 121 AERMVLELRDRAAQFG-------AGGALPTGSGPAPADPLSDATVALQQLGYKPAEAARM 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A +IR AL++ Sbjct: 174 ARDAFNEGDEVA---TVIRKALQS 194 >gi|227823320|ref|YP_002827292.1| Holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234] gi|254767382|sp|C3MIH6|RUVA_RHISN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|227342321|gb|ACP26539.1| holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234] Length = 205 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+V++DV GV Y+ YC RTL+ LG G+ LF+ET++R+DQ+RL Sbjct: 1 MIGKLKGTIDEIGEDFVVLDVHGVGYVAYCSARTLAKLGSAGEAAVLFIETYVREDQLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQ+VQGVG++VA+ +L+ +T EL +I LQ+ +A+ PG+ K+ Sbjct: 61 FGFLSALEREWFRLLQTVQGVGSKVALALLTTLTPGELANAIALQDKTSVARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + + + + + P +A+SAL NLGY +DQA A Sbjct: 121 AVRIVTELKNKAPAFAGEMSASIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL L+ ++ Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELA 204 >gi|33598084|ref|NP_885727.1| Holliday junction DNA helicase motor protein [Bordetella parapertussis 12822] gi|44888435|sp|Q7W4T9|RUVA_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33566642|emb|CAE38852.1| holliday junction DNA helicase [Bordetella parapertussis] Length = 190 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV GV Y I P+ TL L + G TLF +R+D L Sbjct: 1 MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ EL ++I LQ + + ++PGI K Sbjct: 61 YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A + + ++AL+ LGY ++ A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAAGGHQSDILNALLALGYSDKESQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LKK D S+ IRLAL+A+ Sbjct: 168 ----LKKLPEGVDVSEGIRLALKAL 188 >gi|90426276|ref|YP_534646.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris BisB18] gi|122995259|sp|Q20X09|RUVA_RHOPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90108290|gb|ABD90327.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris BisB18] Length = 205 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 135/206 (65%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L + G L +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDYVILDVQGVGYQVHCSARTLQALPQAGGAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS + +L +I L++ +A+ G+ K+ Sbjct: 61 FGFRSDLEREWFRLLQTVQGVGAKVALAVLSTLPPADLANAIALRDKAAVARTSGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + +SV ++ S P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFASVDPAVVALSG--ALDERSAPRPVTDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S + A+ +Q+I+L L+ +S Sbjct: 179 IASASRSAGEGAETAQLIKLGLKELS 204 >gi|239628227|ref|ZP_04671258.1| holliday junction DNA helicase RuvA [Clostridiales bacterium 1_7_47_FAA] gi|239518373|gb|EEQ58239.1| holliday junction DNA helicase RuvA [Clostridiales bacterium 1_7_47FAA] Length = 209 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G+ ED ++++ V I P L ++G+ T++ +R+D + L Sbjct: 1 MISYVKGPLMGIDEDSIIVEAGNVGLAIRVPASLQPELPRLGEEVTIYTYFQVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL DR F L V G+G + A+G+LS + +L +I+ ++ K +A+ PGI K Sbjct: 61 YGFLHSQDRDMFRQLIGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120 Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ +LK K L S+ S V A + + A A+ ALV LGY +A Sbjct: 121 AQRLILDLKDKISMDDVLGSMALSGDSGVGPAAASMAGLAEAAKEAVQALVALGYTNTEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + AV V E +++ +L+ +S Sbjct: 181 SRAVKQVEVAEG--MTSEDVLKASLKHLS 207 >gi|182677007|ref|YP_001831153.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp. indica ATCC 9039] gi|229560003|sp|B2IAW4|RUVA_BEII9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|182632890|gb|ACB93664.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 129/206 (62%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ ED+V++DVQGV YI++C RTL L K G L +E +R+D IRL Sbjct: 1 MIGKLTGLVDSQGEDHVILDVQGVGYIVFCSSRTLRLLPKPGASTALLIEMQVREDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+++R WF LLQSVQGVGA+VA+ + ++ATEL ++I LQ+ + + PG+ K+ Sbjct: 61 FGFPSEVERDWFRLLQSVQGVGAKVALALQGLLSATELAQAIALQDKASLGRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++TELK K +L V E P A +AI+ALVNLGYG+ QA A Sbjct: 121 AARLITELKDKMPALGPVDSLTAKLTIAEAEGTA--PVAAQDAITALVNLGYGRPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + L+ A + +IR L+ ++ Sbjct: 179 VATSLEALGETAPLADLIRRGLKELA 204 >gi|13473339|ref|NP_104906.1| Holliday junction DNA helicase RuvA [Mesorhizobium loti MAFF303099] gi|20455256|sp|Q98F75|RUVA_RHILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|14024088|dbj|BAB50692.1| Holliday branch migration protein; RuvA [Mesorhizobium loti MAFF303099] Length = 206 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 133/207 (64%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ L+D+ GV Y+ YC RTL+ L G+ LF+ET++R+D +RL Sbjct: 1 MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R+WF LL +V GVGA+VA+ +LS + +L +I L++ ++++ PG+ K Sbjct: 61 YGFQSALEREWFRLLLNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + K++ P+ +A+SALVNLGY +D A Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGL--KQELGEGVAPAPITDAVSALVNLGYSRDTAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD S++IR L+ ++ Sbjct: 179 AVAAALKTAGEDADASKLIRFGLKELA 205 >gi|332878178|ref|ZP_08445907.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683916|gb|EGJ56784.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 194 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V+ID QGV Y + + T + L + G+ L+ +++D L Sbjct: 1 MITQLQGKLVEKNPTNVVIDCQGVGYFVNISLNTYAALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA ++ +I+ I + GI K Sbjct: 60 YGFLTKAEREVFVLLISVSGVGAGTARTMLSSLTAAQVRNAIVNGEVATIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L A I ++ + A+SAL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDFAD----------APISAVSTHKEEALSALEVLGFVRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++ + II+ AL+++ Sbjct: 170 VDKIVQAAPDSLSVEDIIKQALKSL 194 >gi|294789135|ref|ZP_06754374.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC 29453] gi|294482876|gb|EFG30564.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC 29453] Length = 195 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++IDV GV Y + ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLRGTLIDKTPPQIVIDVNGVGYEVDVSMQTFYALPALGETVQLYTQLAVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS ++ +L +I ++ K ++ P + K Sbjct: 61 FGFADLAERATFRQLVKVSGIGAKTALGILSALSPDDLAAAIASEDVKKLSSAPSVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK S+ + H + + + +S L+ LGY + ++ A Sbjct: 121 AERMILELRGKLTVSGSL--------KDDLLHATASVDNSEDVVSTLLALGYNEKESRLA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + D S+ ++LAL+ + Sbjct: 173 VKGLAAD----VDVSEGVKLALKNL 193 >gi|158422139|ref|YP_001523431.1| Holliday junction DNA helicase RuvA [Azorhizobium caulinodans ORS 571] gi|172048036|sp|A8IM99|RUVA_AZOC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158329028|dbj|BAF86513.1| DNA recombination protein [Azorhizobium caulinodans ORS 571] Length = 206 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 135/206 (65%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED++++DV GV Y+++C RTL L ++G+ LF+ETH+R+DQIRL Sbjct: 1 MIGKLKGTVDSFGEDHLILDVHGVGYLVHCSGRTLQALPRVGEAAVLFIETHVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+++ +R+WF LLQ +QG+G + A+ +LS + ++L +++ L + +A+ G+ ++ Sbjct: 61 FGFVTEAEREWFRLLQGIQGIGTKTALAILSTLKPSDLAQAVALGDKTALARANGVGPRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+TELK K + ++ ++ + + + +A+SALVNLGYGQ QA TA Sbjct: 121 ATRIVTELKDKVPAFTAADP-GLARLAADVEATEAAGGALADAVSALVNLGYGQAQAHTA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +K A +IRL L+ ++ Sbjct: 180 IAAAGRKAGEDATTETLIRLGLKELA 205 >gi|319941758|ref|ZP_08016080.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis 3_1_45B] gi|319804691|gb|EFW01558.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis 3_1_45B] Length = 193 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +LIDV GV Y + P+ T L ++G TL +R+D L Sbjct: 1 MIGRLHGKLLEKNPPQILIDVSGVGYEVDVPMSTFCNLPEVGGELTLHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG ++A+ +LS IT +L +++ + ++ ++PGI K Sbjct: 61 YGFATLAERAVFRALIKISGVGPKIALALLSGITVDQLKDAVDRGETGLLTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + A + +AL+ LGY + +A A Sbjct: 121 AERLVLELKGKLAGTGAATA----------AAAVPTSGARADVAAALIALGYSEREAAAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 KK + +RLAL+++ Sbjct: 171 ----TKKLPEDCTVNDGLRLALKSL 191 >gi|167759024|ref|ZP_02431151.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704] gi|167663431|gb|EDS07561.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704] Length = 203 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG +E L ED V+IDV G+ Y ++ + + L IG + ++++D ++L Sbjct: 1 MISYLKGTLEALEEDKVVIDVGGIGYGVFMSGQAMGLLPSIGKEVKIHTYLNIKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F LL V G+G + +GVLS ++ EL +++ + K I Q PGI K Sbjct: 61 YGFLTKDDLEVFKLLIGVNGIGPKGGLGVLSALSPDELRFAVMSNDVKAICQAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ EL+ K ++ + ++ N+ Q NA+ AL LGYG +A A Sbjct: 121 AEKLILELRDKLRLEDAL--EHLASENEVQGAAAYQGEVQSNAVQALAALGYGSTEALKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V E + ++++ AL+ + Sbjct: 179 VRQVDITEN--MEVEEVLKQALKLM 201 >gi|120434550|ref|YP_860244.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella forsetii KT0803] gi|166230555|sp|A0LXS4|RUVA_GRAFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117576700|emb|CAL65169.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella forsetii KT0803] Length = 193 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + YV+I+ G+ Y I + T S + + +++ +++D L Sbjct: 1 MIHHLKGQLIEKNPTYVVIECNGIGYYINISLHTFSLIPDS-EAVSVYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F LL SV GVG A +LS + E+ E+I ++ I + GI K Sbjct: 60 YGFAEKSEREIFRLLISVSGVGTSTARMMLSSLQPREVTEAIASEDVATIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + ++ + + A+SAL LGY + QA Sbjct: 120 AQRVILDLKDKVLKV----------LGDDEVFVSQSNTNKEEALSALEILGYNRRQAGKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK++ + II++AL+ + Sbjct: 170 VEKILKEDPE-STVESIIKMALKKL 193 >gi|118581082|ref|YP_902332.1| Holliday junction DNA helicase RuvA [Pelobacter propionicus DSM 2379] gi|166230581|sp|A1ASF4|RUVA_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118503792|gb|ABL00275.1| Holliday junction DNA helicase subunit RuvA [Pelobacter propionicus DSM 2379] Length = 198 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D++++DV GV Y + P T L + G +L + T +R+D I+L Sbjct: 1 MIALLTGQIAQKSPDHIILDVNGVGYRVQIPFSTYYDLPEEG-TVSLHIHTSVREDAIQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L++ +F LL SV GVG R+A +LS I +L +++ + ++++ +PGI K Sbjct: 60 YGFRTSLEKSFFQLLLSVSGVGPRLARDILSNIQPAQLAQALGQGDIRMLSAVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L D+S V + + +SAL+NLGY + Q Sbjct: 120 AERLVLELKEKVGKL------DLSSVVVPEPRQMPEDDLLEDVVSALLNLGYKEPQVRKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A +++ AL+++ Sbjct: 174 LAGLNP--GSDASLEGVLKQALKSL 196 >gi|241760730|ref|ZP_04758822.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114] gi|241318911|gb|EER55437.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114] Length = 194 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGEAVHLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL ++I ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S + V+ ++ + + I+ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVSHT---------VSDGLFAPDAVADESQDIINTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 172 AKGI----PKGTEVGEGVRLALKNL 192 >gi|270262223|ref|ZP_06190495.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia odorifera 4Rx13] gi|270044099|gb|EFA17191.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia odorifera 4Rx13] Length = 204 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L +G +F + +R+D L Sbjct: 1 MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPDLGQEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + S + A + A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPASATQAAELDAEAEAASALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 MVSKIAK---PGADCETLIRDALRA 202 >gi|300023944|ref|YP_003756555.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans ATCC 51888] gi|299525765|gb|ADJ24234.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + E ++++DV GV Y + RTL L K GD TL ++TH+R+D IRL Sbjct: 1 MIGKLKGKVDAIGESFLIVDVHGVGYEVQASSRTLRNL-KPGDDVTLTIDTHVREDAIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ +R WF LQ++QGVGA+VA+ VL + E+ +++L N + + PG+ K+ Sbjct: 60 FGFQSEFERSWFRTLQTIQGVGAKVALSVLGVLGPQEIANAVVLGNWAAVEEAPGVGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA SLS + + A + + A AISAL NLGY QA A Sbjct: 120 ALRIVAELKDKAPSLS-LAGLPATPGGGPAAAVAPVGLPAAEAISALTNLGYNPAQANQA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ AD + +I+ AL+ ++ Sbjct: 179 VALASRELGEAADTAALIKRALKELA 204 >gi|221134420|ref|ZP_03560725.1| Holliday junction DNA helicase RuvA [Glaciecola sp. HTCC2999] Length = 207 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I G + ++I G+ Y + + ++ L G T+F +R+D L Sbjct: 1 MIGLITGTLLAKQPPEIMIQAGGIGYEVSMSMHSIYALPTEGQPVTVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R F L GVG ++A+ +LS ++ +L+ ++ ++ + +IPG+ K Sbjct: 61 FGFIEKEERTVFRELIKANGVGPKLAITILSGMSVQDLIRAVGYEDVSSLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM----SCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ELK + L+ + + + I + A+SALV LGY Sbjct: 121 AERLVVELKDRLAKLTLTQPNEALTLPVVSATDGSTIIPINDTREEALSALVALGYKAPV 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + SV + Q+IR AL+A+ Sbjct: 181 ASKIIQSVY---DDTMSSEQLIRAALKAM 206 >gi|147677361|ref|YP_001211576.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum thermopropionicum SI] gi|146273458|dbj|BAF59207.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum thermopropionicum SI] Length = 211 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + V++DV G+ Y + P+ L+ L G+ L+ +R++ L Sbjct: 16 MISYIKGKLAEVQAGAVVLDVGGIGYRVQVPLSVLNKLPARGEDVLLYTHLAVREEGFFL 75 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +F+ L V G+G +VA+ +L+ + EL II ++ + ++PG+ K Sbjct: 76 YGFSDQNELGFFLKLLGVSGIGPKVALAILTIFSPDELGRIIIGGDTAALTRVPGVGKKT 135 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K E+ + +A+ AL LGY +A A Sbjct: 136 AGRIILELKDKVTE-----------TTLEREPLSGRSGVEADAVEALEALGYTAAEALKA 184 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VLK ++I+R ALR + Sbjct: 185 VKEVLK-GPGQPSAAEIVREALRLL 208 >gi|317131997|ref|YP_004091311.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense YUAN-3] gi|315469976|gb|ADU26580.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense YUAN-3] Length = 199 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 9/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +I GV + TL L G+ L+ ++R+D + L Sbjct: 1 MIYSLKGTLTHTGPGMAVISCGGVGFKCLTTANTLGALPPPGEEAFLYTHLNVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F +L V GVG + A+ +LS T + S+ ++K + + PGI KI Sbjct: 61 YGFGSEEELHCFRMLIGVSGVGPKAALSILSGTTPAQFAFSVASGDAKALTRAPGIGSKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +Q + A A+SALV LGY +A A Sbjct: 121 AQRIVLELKDKING-----EQAAANFTGGTPVPAVSGGSAAEAVSALVVLGYSGTEAQGA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V + IIR ALR ++ Sbjct: 176 VNRCDPAQ----SVEDIIRQALRLLAS 198 >gi|261821379|ref|YP_003259485.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae WPP163] gi|261605392|gb|ACX87878.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae WPP163] Length = 205 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + + + + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPASADSRVGEPEVEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + + AD +IR ALRA Sbjct: 181 RMISKIARPD---ADCETLIRDALRA 203 >gi|78221965|ref|YP_383712.1| Holliday junction DNA helicase RuvA [Geobacter metallireducens GS-15] gi|123729330|sp|Q39XN7|RUVA_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78193220|gb|ABB30987.1| Holliday junction DNA helicase subunit RuvA [Geobacter metallireducens GS-15] Length = 199 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D ++IDV GV Y + P T L G +L + TH+++D I L Sbjct: 1 MIARLTGMLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPDEGKTVSLSIYTHVKEDAISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++F +L SV G+G ++A +LS I EL +I+ N ++ IPGI K Sbjct: 61 FGFRTVAEKEFFQVLISVSGIGPKMARDILSNIQPDELAGAILQGNLVRLSSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + D++ KE A + P A + SALVNLGY + Sbjct: 121 AERLVLELKEKVRKM------DVAPSTKEAAPSEAPPEVADDVASALVNLGYKEAVVRKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + A ++R AL+ + Sbjct: 175 LAEMAIE--SGASTEAVLRQALKIL 197 >gi|82703833|ref|YP_413399.1| Holliday junction DNA helicase RuvA [Nitrosospira multiformis ATCC 25196] gi|123740585|sp|Q2Y5G4|RUVA_NITMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|82411898|gb|ABB76007.1| Holliday junction DNA helicase subunit RuvA [Nitrosospira multiformis ATCC 25196] Length = 197 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + VL+DVQGV Y I P+ T L +G TL +R+D L Sbjct: 1 MIGRISGLLLEKFPPLVLVDVQGVGYEIDVPMSTFYNLPAVGTQITLHTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L + GVGAR A+ +LS ++ +L +++ Q+ + +IPGI K Sbjct: 61 FGFATEGERQAFRQLVKISGVGARTALALLSGLSVADLHQTVSNQDPARLIRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S + A + + ++AL++LGY +A A Sbjct: 121 AERLLLELRDKLDLGVSAIPG--------AAGARRPSTMGSDVLNALLSLGYNDREANWA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + S IR AL+ +S Sbjct: 173 VSQLSVDL----SVSDGIRQALKFLS 194 >gi|153008543|ref|YP_001369758.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC 49188] gi|166230577|sp|A6WY75|RUVA_OCHA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151560431|gb|ABS13929.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 140/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG +G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGVGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204 >gi|325286780|ref|YP_004262570.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga lytica DSM 7489] gi|324322234|gb|ADY29699.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga lytica DSM 7489] Length = 193 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +++I+ GV Y + + TLS + + L+ +++D L Sbjct: 1 MITHLRGKLVEKNPTFLVIECNGVGYFVNISLHTLSKVSDA-ENIQLYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+G +A +LS ++ ++ ++I + I + GI K Sbjct: 60 FGFAEKSEREIFRLLISVSGIGPSIARTMLSSLSPAQVRDAIAGGDVATIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + ++ S + A+SAL LG+ + QA Sbjct: 120 AQRVILDLKDKVLKIYDI----------DEVSTSSNNTNKEEALSALEVLGFARKQAEKT 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V+ ++ + II+LAL+ + Sbjct: 170 VDVVVSQDPTL-SVENIIKLALKNL 193 >gi|319781019|ref|YP_004140495.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166907|gb|ADV10445.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 131/207 (63%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ L+D+ GV Y+ YC RTL+ L G+ LF+ET++R+D +RL Sbjct: 1 MIGKLKGTLDEVDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R+WF LL +V GVGA+VA+ +LS + +L +I L++ ++++ PG+ K Sbjct: 61 YGFQSVLEREWFRLLMNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + + + S P +A+SALVNLGY +D A Sbjct: 121 VAERIVTELKNKAPAYAGTASGTIGLKQELGDGVASAP--ITDAVSALVNLGYSRDTAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD ++IR L+ ++ Sbjct: 179 AVAAALKTAGEDADAPKLIRFGLKELA 205 >gi|77163677|ref|YP_342202.1| DNA recombination protein, RuvA [Nitrosococcus oceani ATCC 19707] gi|254435109|ref|ZP_05048616.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27] gi|90135436|sp|Q3JES4|RUVA_NITOC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76881991|gb|ABA56672.1| Holliday junction DNA helicase subunit RuvA [Nitrosococcus oceani ATCC 19707] gi|207088220|gb|EDZ65492.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27] Length = 199 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L+DVQGV Y + P+ T L +G L+ +R D L Sbjct: 1 MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F S+ +R F L V GVGA++ +G+LS I A + ++ + ++PG+ K Sbjct: 61 YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + M + S P A+SALV LGY ++A+ A Sbjct: 121 AERLIVEMRDRLLDMPESGVAGM----RPDRVDGSAPGTVAEAVSALVALGYKPNEASRA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + +IIR AL+ + Sbjct: 177 VRRL---DTEALTTEEIIRQALQRM 198 >gi|307944538|ref|ZP_07659878.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4] gi|307772287|gb|EFO31508.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4] Length = 205 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ D+V+IDV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTIDSYGGDHVIIDVHGVGYQVHCPSRILQSLPRAGEAAVLFIETVVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+WF LL +VQGVGA+VA+G+L + A+E+ +I L + I + PG+ ++ Sbjct: 61 FGFGDEAEREWFRLLTTVQGVGAKVALGILGILKASEIANAIALSDKATITRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK KA S +SV ++ + + P A+SAL NLGYGQ QA A Sbjct: 121 AERILSELKDKAPSYASVDDATVAVSQSVSDDVAARP--VAEAVSALTNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ A +IRL L+ ++ Sbjct: 179 VARAVQSAGEDATTETLIRLGLKELA 204 >gi|295132466|ref|YP_003583142.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia profunda SM-A87] gi|294980481|gb|ADF50946.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia profunda SM-A87] Length = 193 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + YV++D GV Y ++ + T S + K + +F +++D L Sbjct: 1 MIHHLKGKLVEKNPTYVVVDCNGVGYFVHISLNTFSKI-KDEEQIAIFTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+GA A +LS + T++ ++I + I I GI K Sbjct: 60 FGFQEKSEREIFRLLISVSGIGASTARTMLSSLDPTQIRDAIASGDVATIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + ++ + + A+SAL LGY + QA Sbjct: 120 AQRVILDLKDKIVKIFGI----------DEVFVEQSNTIKEEALSALETLGYARKQADKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++K+ ++ +I+LAL+ + Sbjct: 170 LNKLIKEIED-PTVETLIKLALKNL 193 >gi|319638740|ref|ZP_07993499.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa C102] gi|317399981|gb|EFV80643.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa C102] Length = 194 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL +++ ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK IS + V+ ++ + + I+ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLISHT---------VSDGLFAPDAVADKSQDIINTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192 >gi|187479251|ref|YP_787276.1| Holliday junction DNA helicase RuvA [Bordetella avium 197N] gi|123765963|sp|Q2KVY6|RUVA_BORA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115423838|emb|CAJ50389.1| holliday junction DNA helicase [Bordetella avium 197N] Length = 190 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV G+ Y I P+ TL L G TLF +R+D L Sbjct: 1 MIGRITGTLIEKTPPVVYVDVNGIGYEIDVPMSTLYALPDTGARVTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ EL ++I LQ S + ++PGI K Sbjct: 61 YGFGTASERAAFRELVKVSGIGARTALAVLSGMSVAELAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A ++P + ++AL+ LGY + ++ A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAVPDSQSDILNALLALGYSEKESLAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK S IR AL+A++ Sbjct: 168 ----LKTLPEGLGVSDGIRQALKALA 189 >gi|163869137|ref|YP_001610376.1| Holliday junction DNA helicase RuvA [Bartonella tribocorum CIP 105476] gi|189045742|sp|A9IYK7|RUVA_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161018823|emb|CAK02381.1| holliday junction DNA helicase RuvA [Bartonella tribocorum CIP 105476] Length = 204 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 131/208 (62%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E ++EDY+++DV GV Y+++ R L +G+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGTLEHIFEDYIVLDVHGVGYVVFISNRLRPSLPSVGEALSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF +LQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFATRAEQEWFCMLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI+ ELK K + +Q + V+ Q I P+ +A+SAL+ LG+ ++QA A Sbjct: 121 SERIVGELKSKTLPF----EQAVKTVSVPQREITHQPAH--DALSALMKLGFEREQAARA 174 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207 + + E + +IR +L+ +S Sbjct: 175 LALAMNALEGEAVSSALLIRHSLKLLSS 202 >gi|39996178|ref|NP_952129.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA] gi|81702836|sp|Q74E87|RUVA_GEOSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|39982943|gb|AAR34402.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA] gi|298505192|gb|ADI83915.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens KN400] Length = 199 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D ++IDV GV Y + P T L + G +L + TH+++D I L Sbjct: 1 MIALLTGRLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPEEGKTVSLSIHTHVKEDSISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++F LL SV G+G ++A +LS I EL +I+ N ++ IPGI K Sbjct: 61 FGFRTLAEKEFFQLLISVSGIGPKMARDILSNIQPEELAAAIVQGNLVRLSSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + D++ +E + A + SALVNLGY + Sbjct: 121 AERLVLELKEKVRKM------DVAPSAQEAPSSEAPAEVADDVASALVNLGYKEAVVRKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A ++R AL+ + Sbjct: 175 LAEMSIE--PDASTEAVLRQALKVL 197 >gi|240851225|ref|YP_002972628.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup] gi|240268348|gb|ACS51936.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup] Length = 204 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 132/208 (63%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++L+DV GV Y+++ R L +G+ +LFVETH+R+D IRL Sbjct: 1 MIGKLKGTLEHIFDDHILLDVHGVGYVVFVSNRLRPSLPSVGEALSLFVETHVREDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFATRAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI+ ELK K + +Q + V+ Q + + P+ +A+SAL+ LG+ ++ A+ A Sbjct: 121 SERIVGELKSKTLPF----EQAVKTVSVPQREMTNQPAH--DALSALMKLGFEREHASRA 174 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207 + + E + +IR +L+ +S Sbjct: 175 LALAMNALEGETVSSALLIRHSLKLLSS 202 >gi|332716453|ref|YP_004443919.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium sp. H13-3] gi|325063138|gb|ADY66828.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium sp. H13-3] Length = 205 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 98/206 (47%), Positives = 140/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG IE + DYVL+DV GVCY+ YC RTLS +G G+ LF+ET++R+DQ+RL Sbjct: 1 MIGKLKGTIEEIGTDYVLVDVHGVCYVAYCSARTLSKIGSAGEAVVLFIETYVREDQLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQSVQGVG++VA+ VLS ++ +EL +I LQ+ +I++ PG+ K+ Sbjct: 61 FGFLSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKVMISRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TEL+ KA + + + + + S P +A+SAL NLGY +DQA A Sbjct: 121 AVRLVTELRNKAPAFAGEASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL LR +S Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLRELS 204 >gi|238021644|ref|ZP_04602070.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147] gi|237866258|gb|EEP67300.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147] Length = 195 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + + IDV G+ Y + ++T L IGD ++ + +R+D L Sbjct: 1 MITHLTGKLAEKHPPQITIDVNGIGYELEVSMQTFYQLPNIGDSLHIYTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS +A EL +I ++ K ++ PGI K Sbjct: 61 FGFAGKAERATFRQLVKVSGIGAKTALGILSAFSADELAAAIAQEDIKRLSAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK S + P + + IS L+ LGY + +A A Sbjct: 121 AERMILELRGKLAPTSGEATGLFAP--------AVTPDASEDIISTLLALGYNEREARAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D + +RLAL+ + Sbjct: 173 TKGI----PADTDVGEGVRLALKNL 193 >gi|294054968|ref|YP_003548626.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis DSM 45221] gi|293614301|gb|ADE54456.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis DSM 45221] Length = 199 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG ++ V++DV+GV Y ++ P+ T + +G+ C LF+ + R+D L Sbjct: 1 MIARLKGTVDESTPLLVVLDVKGVGYEVHIPVTTAEQIPAVGETCNLFIHSVYREDSATL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S DR +F LL V G+G ++ + +LSR++ L +I + ++++ PGI K Sbjct: 61 YGFASREDRDFFRLLVEKVSGIGPKIGISILSRMSVNVLQAAIASSDVALLSKCPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K Q S + + S +A+ +L LGY A Sbjct: 121 TAERLVIELKDKV-----YTQAPSSNTSSKHNANPDTSSAFQDAVGSLTTLGYKNADADK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + ++ A +IR AL+ Sbjct: 176 LIRKAAQRIGTDASVEDLIREALK 199 >gi|225077350|ref|ZP_03720549.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens NRL30031/H210] gi|224951342|gb|EEG32551.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens NRL30031/H210] Length = 194 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+ID+ GV Y ++T L IG+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDINGVGYEADVSMQTFYNLPPIGETVHLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL ++I ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S + V+ ++ + + I+ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVSHT---------VSDGLFAPAAVADESQDIINTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192 >gi|121601945|ref|YP_988488.1| Holliday junction DNA helicase motor protein [Bartonella bacilliformis KC583] gi|166230519|sp|A1UR85|RUVA_BARBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120614122|gb|ABM44723.1| Holliday junction DNA helicase RuvA [Bartonella bacilliformis KC583] Length = 217 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 134/214 (62%), Gaps = 7/214 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ ++ED++++DVQGV Y+++ R LS L + G +LF+ETH+R+D IRL Sbjct: 1 MIGKLTGILDSVFEDHIILDVQGVGYVVFLSNRLLSSLPERGQAVSLFIETHVREDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ WF LLQ+V+GVGA+VA+ +LS + +L ++I L + +I++ PG+ + Sbjct: 61 FGFETKVEQDWFCLLQNVRGVGAKVALAILSTLPPPQLAQAITLSDIAMISRSPGVGKMV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM------SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 + RI+ ELK KA+ ++ Q S + + + +++A++AL LG+ + Sbjct: 121 SERIINELKNKALPSNAPHQSMPHFVSYSSETSSQAGTQHTGHQHSMDALAALTKLGFER 180 Query: 175 DQATTAVVSVLKK-EKNIADDSQIIRLALRAISC 207 DQAT A+ +K E + +IR +L+ +S Sbjct: 181 DQATHALQEAIKAFEGETPSSALLIRHSLKLLSS 214 >gi|326335182|ref|ZP_08201379.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692712|gb|EGD34654.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 196 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G++ YV+ID G+ Y + + T S L + L+ +++D L Sbjct: 1 MITQLQGHLVEKTPTYVIIDCNGIGYWVNISLNTFSQLSDS-EQIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV GVGA A +LS ++ +L +I+ + + I + GI K Sbjct: 60 FGFFEKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNNDVRTIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ K + LSS + +++ +Q H + A+SAL LGY Q A Sbjct: 120 AQRIILDLREKMLKLSS--EGNIAPTVSQQQH------YKEEALSALEVLGYPQKIAENV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L ++I+ AL+ + Sbjct: 172 VNKILSHATGEVSVEELIKQALKQL 196 >gi|306841422|ref|ZP_07474124.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2] gi|306288528|gb|EFM59880.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2] Length = 205 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204 >gi|166031914|ref|ZP_02234743.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC 27755] gi|166028367|gb|EDR47124.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC 27755] Length = 203 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + YED V++DV GV Y IY +++S L IG + ++++D ++L Sbjct: 1 MISYIRGELAAQYEDKVIVDVGGVGYGIYMSAQSMSKLPPIGSEVKIHTYLNVKEDSMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL V G+G + +LS ++ +L +++ + K I+ PGI K Sbjct: 61 FGFLTVDDLNVFKLLIGVSGIGPKGGQAILSVLSPDDLRFAVMADDVKAISSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K S+ ++ ++ +A + + A+ ALV LGYG +A A Sbjct: 121 AQKLIVELKDKL-SIEDALEHAITEDGALKAQMSTGGEIQSEAVQALVALGYGNTEALKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + ++++ AL+ + Sbjct: 180 VKQV--EITPDMQVEELLKRALKFM 202 >gi|303241604|ref|ZP_07328103.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus CD2] gi|302590824|gb|EFL60573.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus CD2] Length = 202 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +E + +Y++++ GV Y IY + T+ + IG ++ ++R+D + L Sbjct: 1 MFAYIRGKLEYKHNEYIVVEANGVGYKIYTSLSTIQNVESIGSEVKIYTHLYVREDIMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL V GVG + A+ V+S ++ ++ S+I + K + + GI K+ Sbjct: 61 YGFLTQEEMGMFELLLGVSGVGPKAAISVISSMSPSKFGLSVITDDYKSLTKAQGIGNKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V + S AISALV LGY +A+ A Sbjct: 121 AQRIILELKDKIDKTDMVTS---FNGKDGAIPANNDNSRVSEAISALVVLGYTATEASKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V SV + D II+ AL+ ++ Sbjct: 178 VASVYSDDM---DLECIIKSALKGLA 200 >gi|154246996|ref|YP_001417954.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus Py2] gi|229560140|sp|A7IJV4|RUVA_XANP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154161081|gb|ABS68297.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus Py2] Length = 205 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ L ED+V++DV GV Y+++C RTLS L + G+ LF+ETH+R+DQIRL Sbjct: 1 MIGKLKGVVDTLEEDHVILDVHGVGYLVHCSGRTLSALPRAGEAAALFIETHVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R WF LLQ +QG+G + A+ VLS ++A+EL ++I L + +A+ PG+ ++ Sbjct: 61 FGFSSAAERDWFRLLQGIQGIGTKTALAVLSTLSASELTQAIALGDKTTVARAPGVGPRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+TELK K S+ + ++ + A +A+SALVNLGYG QA A Sbjct: 121 ATRIITELKDKMPGFSA--SEPLAAQLGGGGVASAQGGAAADAVSALVNLGYGVPQANAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + L+ A +IRL L+ ++ Sbjct: 179 IAAALRGAGEGAKTEVLIRLGLKELA 204 >gi|254429429|ref|ZP_05043136.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881] gi|196195598|gb|EDX90557.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881] Length = 200 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y + P+ L G TL +R+D L Sbjct: 1 MIGQLRGTLLEKRPPVLLLDVGGVGYEVEAPMTVFYDLPDAGAELTLHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L V GVG ++A+ +LS I A L I Q++ + ++PGI K Sbjct: 61 YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ + + V+ Q +AI+AL LGY A Sbjct: 121 AERLVIEMSDRLDKIDGGPVSLPGRVDTRQPD-----DARSDAIAALEALGYRNK--DAA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +++ Q+IR AL++++ Sbjct: 174 AAVAKAADEDGLSSEQLIRKALKSLA 199 >gi|17986616|ref|NP_539250.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str. 16M] gi|23502561|ref|NP_698688.1| Holliday junction DNA helicase RuvA [Brucella suis 1330] gi|62290575|ref|YP_222368.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 1 str. 9-941] gi|82700491|ref|YP_415065.1| Holliday junction DNA helicase RuvA [Brucella melitensis biovar Abortus 2308] gi|148560383|ref|YP_001259556.1| Holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840] gi|161619632|ref|YP_001593519.1| Holliday junction DNA helicase motor protein [Brucella canis ATCC 23365] gi|163845283|ref|YP_001622938.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445] gi|189024793|ref|YP_001935561.1| Holliday junction DNA helicase RuvA [Brucella abortus S19] gi|225628272|ref|ZP_03786306.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo] gi|225853159|ref|YP_002733392.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC 23457] gi|237816080|ref|ZP_04595076.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A] gi|254689871|ref|ZP_05153125.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 6 str. 870] gi|254694364|ref|ZP_05156192.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 3 str. Tulya] gi|254698022|ref|ZP_05159850.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 2 str. 86/8/59] gi|254700364|ref|ZP_05162192.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 5 str. 513] gi|254703482|ref|ZP_05165310.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 3 str. 686] gi|254708429|ref|ZP_05170257.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis M163/99/10] gi|254708717|ref|ZP_05170528.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis B2/94] gi|254714564|ref|ZP_05176375.1| Holliday junction DNA helicase RuvA [Brucella ceti M644/93/1] gi|254717461|ref|ZP_05179272.1| Holliday junction DNA helicase RuvA [Brucella ceti M13/05/1] gi|254730906|ref|ZP_05189484.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 4 str. 292] gi|256030243|ref|ZP_05443857.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis M292/94/1] gi|256045313|ref|ZP_05448207.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str. Rev.1] gi|256061740|ref|ZP_05451877.1| Holliday junction DNA helicase RuvA [Brucella neotomae 5K33] gi|256114271|ref|ZP_05455016.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 3 str. Ether] gi|256255624|ref|ZP_05461160.1| Holliday junction DNA helicase RuvA [Brucella ceti B1/94] gi|256258125|ref|ZP_05463661.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 9 str. C68] gi|256263350|ref|ZP_05465882.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 2 str. 63/9] gi|260167918|ref|ZP_05754729.1| Holliday junction DNA helicase RuvA [Brucella sp. F5/99] gi|260547181|ref|ZP_05822919.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038] gi|260565796|ref|ZP_05836279.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. 16M] gi|260568788|ref|ZP_05839256.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40] gi|260755403|ref|ZP_05867751.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 6 str. 870] gi|260758625|ref|ZP_05870973.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 4 str. 292] gi|260762457|ref|ZP_05874794.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 2 str. 86/8/59] gi|260884418|ref|ZP_05896032.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 9 str. C68] gi|261214674|ref|ZP_05928955.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 3 str. Tulya] gi|261219293|ref|ZP_05933574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M13/05/1] gi|261222827|ref|ZP_05937108.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti B1/94] gi|261315928|ref|ZP_05955125.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M163/99/10] gi|261316209|ref|ZP_05955406.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis B2/94] gi|261322354|ref|ZP_05961551.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M644/93/1] gi|261325744|ref|ZP_05964941.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella neotomae 5K33] gi|261750859|ref|ZP_05994568.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 5 str. 513] gi|261754112|ref|ZP_05997821.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 3 str. 686] gi|261757357|ref|ZP_06001066.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. F5/99] gi|265987271|ref|ZP_06099828.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M292/94/1] gi|265991738|ref|ZP_06104295.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. Rev.1] gi|265995575|ref|ZP_06108132.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 3 str. Ether] gi|294850954|ref|ZP_06791630.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026] gi|297248974|ref|ZP_06932682.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str. B3196] gi|54039571|sp|P66743|RUVA_BRUSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042200|sp|P66742|RUVA_BRUME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|75496341|sp|Q57BH7|RUVA_BRUAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123740945|sp|Q2YRD1|RUVA_BRUA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230523|sp|A5VS59|RUVA_BRUO2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045743|sp|A9M7K1|RUVA_BRUC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045744|sp|A9WWI0|RUVA_BRUSI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560007|sp|B2S7E0|RUVA_BRUA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766948|sp|C0REW6|RUVA_BRUMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|17982229|gb|AAL51514.1| holliday junction DNA helicase ruva [Brucella melitensis bv. 1 str. 16M] gi|23348562|gb|AAN30603.1| Holliday junction DNA helicase RuvA [Brucella suis 1330] gi|62196707|gb|AAX75007.1| RuvA, Holliday junction DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82616592|emb|CAJ11671.1| Bacterial DNA recombination protein, RuvA:Helix-hairpin-helix DNA-binding, class 1 [Brucella melitensis biovar Abortus 2308] gi|148371640|gb|ABQ61619.1| holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840] gi|161336443|gb|ABX62748.1| Holliday junction DNA helicase RuvA [Brucella canis ATCC 23365] gi|163676006|gb|ABY40116.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445] gi|189020365|gb|ACD73087.1| Bacterial DNA recombination protein, RuvA [Brucella abortus S19] gi|225616118|gb|EEH13166.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo] gi|225641524|gb|ACO01438.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC 23457] gi|237788743|gb|EEP62955.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A] gi|260095546|gb|EEW79424.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038] gi|260151169|gb|EEW86264.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. 16M] gi|260154172|gb|EEW89254.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40] gi|260668943|gb|EEX55883.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 4 str. 292] gi|260672883|gb|EEX59704.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 2 str. 86/8/59] gi|260675511|gb|EEX62332.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 6 str. 870] gi|260873946|gb|EEX81015.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 9 str. C68] gi|260916281|gb|EEX83142.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 3 str. Tulya] gi|260921411|gb|EEX88064.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti B1/94] gi|260924382|gb|EEX90950.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M13/05/1] gi|261295044|gb|EEX98540.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M644/93/1] gi|261295432|gb|EEX98928.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis B2/94] gi|261301724|gb|EEY05221.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella neotomae 5K33] gi|261304954|gb|EEY08451.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M163/99/10] gi|261737341|gb|EEY25337.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. F5/99] gi|261740612|gb|EEY28538.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 5 str. 513] gi|261743865|gb|EEY31791.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 3 str. 686] gi|262766859|gb|EEZ12477.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 3 str. Ether] gi|263002694|gb|EEZ15097.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. Rev.1] gi|263093349|gb|EEZ17418.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 2 str. 63/9] gi|264659468|gb|EEZ29729.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M292/94/1] gi|294821597|gb|EFG38593.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026] gi|297174107|gb|EFH33464.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str. B3196] gi|326409716|gb|ADZ66781.1| Bacterial DNA recombination protein, RuvA [Brucella melitensis M28] gi|326539423|gb|ADZ87638.1| holliday junction DNA helicase RuvA [Brucella melitensis M5-90] Length = 205 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKETGEGADSAKLIRLGLKELS 204 >gi|296447311|ref|ZP_06889239.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium OB3b] gi|296255176|gb|EFH02275.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium OB3b] Length = 204 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 90/207 (43%), Positives = 133/207 (64%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ +D+V++DVQGV Y+++C RTL L + G+ +L +ET +R+D IRL Sbjct: 1 MIGKLKGVVDSYGDDFVILDVQGVGYVVHCSTRTLQKLPRAGEAASLAIETQVREDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R WF LLQSVQGVGA+VA+ +LS + EL +I Q+ ++A+ G+ K+ Sbjct: 61 FGFSADAERDWFRLLQSVQGVGAKVALAILSILGPGELASAIAGQDKAMVARASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + +++ D + S P A +AISALVNLGYG+ QA A Sbjct: 121 AARIVAELKDKAPAFAAL---DPALARLSGETEASAPQAAQDAISALVNLGYGRPQAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V + LK AD +IR L+ ++ Sbjct: 178 VAASLKALGESADTGALIRRGLKELAS 204 >gi|254719706|ref|ZP_05181517.1| Holliday junction DNA helicase RuvA [Brucella sp. 83/13] gi|265984721|ref|ZP_06097456.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. 83/13] gi|306837835|ref|ZP_07470697.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653] gi|264663313|gb|EEZ33574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. 83/13] gi|306407074|gb|EFM63291.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653] Length = 205 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204 >gi|238792583|ref|ZP_04636216.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia intermedia ATCC 29909] gi|238728218|gb|EEQ19739.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia intermedia ATCC 29909] Length = 188 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 4/188 (2%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 L++ GV Y + P+ L +G +F + +R+D L+GF +R F L Sbjct: 2 LLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K + L+ Sbjct: 62 VNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLNG 121 Query: 138 VVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + + + + S A SALV LGY +A+ V + K AD Sbjct: 122 DLFNNTGDIQLPASSSQTSDADIEAEAASALVALGYKPQEASRLVSKIAK---PGADCET 178 Query: 197 IIRLALRA 204 +IR ALR+ Sbjct: 179 LIRDALRS 186 >gi|256370112|ref|YP_003107623.1| Holliday junction DNA helicase motor protein [Brucella microti CCM 4915] gi|306844695|ref|ZP_07477280.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1] gi|256000275|gb|ACU48674.1| Holliday junction DNA helicase motor protein [Brucella microti CCM 4915] gi|306274867|gb|EFM56637.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1] Length = 205 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204 >gi|95931133|ref|ZP_01313858.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM 684] gi|95132823|gb|EAT14497.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM 684] Length = 199 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I D V++DV GV Y + P+ + L + TL + TH+R+D ++L Sbjct: 1 MIARLCGTIVSKTIDQVIVDVNGVGYQVSVPLSSFYQL-EENQTATLQIYTHVREDALQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++Q F+LL S+ G+G +VA+ +LS + L + ++ +++K +A +PGI K Sbjct: 60 FGFQSLDEKQMFILLLSISGIGPKVALNILSHMDCHALRDCLLQEDAKRLATLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L Q + H + +A+SAL+NLGY + QA+ A Sbjct: 120 ADRLILELREKVRKLYPEQPQTTQAAPEGVLH----NNHHDDALSALINLGYKEKQASAA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + ++ + ++++ AL+ +S Sbjct: 176 LSRLTRE---FSSMEEMLKAALQQLS 198 >gi|15891225|ref|NP_356897.1| Holliday junction DNA helicase motor protein [Agrobacterium tumefaciens str. C58] gi|22001979|sp|Q8U9K5|RUVA_AGRT5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15159588|gb|AAK89682.1| Holliday junction DNA helicase RuvA [Agrobacterium tumefaciens str. C58] Length = 205 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG+IE + DYVL+DV GVCY+ YC RTLS +G +G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGSIEEIGADYVLVDVHGVCYVAYCSARTLSKIGSVGEAVVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S L+R+WF LLQSVQGVG++VA+ VLS ++ +EL +I LQ+ +I++ PGI K+ Sbjct: 61 FGFVSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKTMISRAPGIGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TEL+ KA + + + + + S P +A+SAL NLGY +DQA A Sbjct: 121 AVRLVTELRNKAPAFAGDASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL L+ +S Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204 >gi|291538854|emb|CBL11965.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis XB6B4] Length = 203 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 108/206 (52%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + E+ ++++ G+ Y IY +T L +G+ ++ H+R+D + L Sbjct: 1 MYSYIKGILTDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + + + LL V G+G + A+ +LS +T +L +++ ++K IA+ PG+ K Sbjct: 61 FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + Q+ + H A+ ALV LGY +A A Sbjct: 121 AQRLILELKDKLSLEDAFEQKFEKTGESTENHASGT---KNEAVQALVALGYSSSEALRA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + E+ D +I+++AL+ ++ Sbjct: 178 LNGIEITEE--TDVEEILKMALKKMA 201 >gi|49474677|ref|YP_032719.1| Holliday junction DNA helicase motor protein [Bartonella quintana str. Toulouse] gi|81646802|sp|Q6FYP5|RUVA_BARQU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49240181|emb|CAF26647.1| Holliday junction DNA helicase ruvA [Bartonella quintana str. Toulouse] Length = 205 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 131/207 (63%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++++DVQGV Y+++ R L +G+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHVFDDHIIVDVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFVAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK KA+ D + Q H+ +A+SALV LG+ +DQA A Sbjct: 121 SERIVSELKSKALPF-----NDNALHFTPQPHLEVTHQPTNDALSALVKLGFERDQAARA 175 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + + E + +IR +L+ +S Sbjct: 176 LALAMNALEGETVSSALLIRHSLKLLS 202 >gi|239832790|ref|ZP_04681119.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG 3301] gi|239825057|gb|EEQ96625.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYAAFCSARTLGNLGGAGEAAVLFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204 >gi|325981222|ref|YP_004293624.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp. AL212] gi|325530741|gb|ADZ25462.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp. AL212] Length = 193 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + VL++VQGV Y I P+ T L IG TL+ +R+D L Sbjct: 1 MIGRLTGKLLEKHPPQVLLEVQGVGYEIDVPMSTFYDLPTIGVEITLYTHLVIREDMHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L + G+GAR A+ +LS ++ +L ++ +Q+S + ++PGI K Sbjct: 61 FGFATEPERQTFRQLIKISGIGARTALALLSGLSVADLHHAVSIQDSARLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K D++ ++ ++ + S + ++AL++LGY +A+ A Sbjct: 121 AERLLLELRDKL---------DLALLSSDRVLSSTSES---DILNALLSLGYSDREASWA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + A S IR AL+ +S Sbjct: 169 IKQI----SSNAMVSDGIRQALQLLS 190 >gi|237654483|ref|YP_002890797.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T] gi|237625730|gb|ACR02420.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T] Length = 200 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y I P+ T L G +L +R+D L Sbjct: 1 MIGRITGTLLEKNPPQILVDAHGVGYEIDVPMSTFYNLPATGGTVSLHTHFVVREDGHFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L V GVGAR+A+ VLS ++ +L +++ LQ + + +IPGI K Sbjct: 61 FGFATEEERATFRQLLKVSGVGARMALAVLSGLSVNDLAQAVALQEAGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K M+ A + P + ++AL+ LGY + +A +A Sbjct: 121 AERLLLELRDKLGK----ALPSMTGARLAAAAPGAAPDAKSDILNALLALGYNEREALSA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +K S IR AL+A+S Sbjct: 177 ----MKGLAEDVGVSDGIRQALKALS 198 >gi|115526757|ref|YP_783668.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris BisA53] gi|122294484|sp|Q07H96|RUVA_RHOP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115520704|gb|ABJ08688.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris BisA53] Length = 205 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 136/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L + G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDYVILDVQGVGYQVHCASRTLQALPQAGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS + ++L ++I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDLEREWFRLLQTVQGVGAKVALSVLSTLPPSDLADAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA +SV S P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPGFASVDPAVAHLSG--AIEERSAPRPVADAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A +Q+I+L L+ +S Sbjct: 179 IAAAARSAGDAAQTAQLIKLGLKELS 204 >gi|299533018|ref|ZP_07046405.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44] gi|298719242|gb|EFI60212.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44] Length = 191 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L + G+G R+A+ VLS ++ +L +++ Q + + ++PGI K Sbjct: 61 FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + + + + AL+ LGY +A+ A Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNNDQNDILQALMALGYSDKEASAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LKK S+ I+LAL+A+ Sbjct: 169 ----LKKLPPDVGVSEGIKLALKAL 189 >gi|83312317|ref|YP_422581.1| Holliday junction DNA helicase RuvA [Magnetospirillum magneticum AMB-1] gi|123726899|sp|Q2W2A3|RUVA_MAGMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|82947158|dbj|BAE52022.1| Holliday junction resolvasome, DNA-binding subunit [Magnetospirillum magneticum AMB-1] Length = 212 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG I+ L +D+ ++D GV Y++ C +TL+ L + G LFVET +R+D I L Sbjct: 1 MIAKLKGLIDSLGDDWAVVDCNGVGYLVACSSKTLARL-ETGTAAALFVETQVREDAISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +R WF LL +VQGVGA+VA+ +LS + +L++ I Q+ + + G+ K+ Sbjct: 60 FGFLETGERDWFRLLTTVQGVGAKVALAILSVASPDQLLQIIAAQDKAGLTRANGVGPKL 119 Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+TELK KA L + A + + +A+SALVNLGY + +A Sbjct: 120 AVRILTELKDKAGKIALGGFSPGGIKDALSASAPLPAASGRMEDAVSALVNLGYKRLEAF 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV ++ + AD S +IR AL+ + Sbjct: 180 QAVGETARELGDEADSSALIRAALKHL 206 >gi|46445654|ref|YP_007019.1| Holliday junction DNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|81627839|sp|Q6MFA5|RUVA_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46399295|emb|CAF22744.1| probable Holliday junction DNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 201 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 106/203 (52%), Gaps = 4/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + ++DV GV Y+++ P R L L +IG+ + +R+ L Sbjct: 1 MFAYIKGVLAFFNPSQAIVDVHGVGYLLFIPCRLLGQLPQIGEPVQFYTTYVVREFSHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R F +L +V G+G ++A+ ++ ++ +EL +++ Q+ + ++PG+ K Sbjct: 61 YGFLSYQERDIFEILMNVTGIGPKMALSLIGHLSMSELQIAVMRQDLSTLCRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + D + E +A+ AL+NLGY Q A A Sbjct: 121 AERLIVELKDKLAAIGHLDTSD----HIEPLTQDPKSKSVQDAMLALINLGYNQTTAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + +K+ D +Q+I +AL+ Sbjct: 177 IKQGMKELPEEIDLAQLITVALK 199 >gi|189424313|ref|YP_001951490.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ] gi|229560034|sp|B3E790|RUVA_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189420572|gb|ACD94970.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ] Length = 200 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D+V++DV GV Y + P T L + G TL + T +R+D I L Sbjct: 1 MIALLTGQIAHKSPDHVILDVHGVGYRVMIPFSTYYELPEEGQ-ATLHIHTSVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ +F LL SV G+G ++A +LS I +L ++ + ++ IPGI K Sbjct: 60 YGFRTRTEKSFFQLLISVSGIGPKLARDILSNIQPPQLAAALQQGDLHKLSAIPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK KA L S V + S + SALVNLGY Q Sbjct: 120 AERLVLELKDKAGKLDSGSIPAGDAVGRS----LPAGSVLDDVSSALVNLGYKDPQVRKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A ++++ AL+ + Sbjct: 176 LAEL--DCAGSASVEEVLKQALKIL 198 >gi|331000258|ref|ZP_08323942.1| Holliday junction DNA helicase RuvA [Parasutterella excrementihominis YIT 11859] gi|329572424|gb|EGG54077.1| Holliday junction DNA helicase RuvA [Parasutterella excrementihominis YIT 11859] Length = 189 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I V+I+ G+ Y I P+ T L IG+ L +R+D L Sbjct: 1 MIATIRGKILQKNPPQVVIECGGLGYEIDVPMSTFYNLPNIGEEVFLETVMIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L V G+G R+++ +LS ++A ++ +I ++ +PGI K Sbjct: 61 YGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + S ++ S I ALV LG+ + +A A Sbjct: 121 AERLVLELKDKMVVTS----------------APTVSSVQTEVIQALVALGFSEREARGA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V AD S+ IRL LR ++ Sbjct: 165 AKNV----PADADASEGIRLCLRQLA 186 >gi|91776705|ref|YP_546461.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus KT] gi|123253965|sp|Q1GYR7|RUVA_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91710692|gb|ABE50620.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus KT] Length = 194 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 14/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+ID GV Y P+ T L G+ L + +R+D L Sbjct: 1 MIARLSGILVEKTPPQVVIDCHGVGYECEVPMSTFYNLPATGEKVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R F L V GVGA+ A+ +LS ++ +L +++ LQ + ++ ++PGI K Sbjct: 61 YGFGSDQERATFRQLLKVNGVGAKSALAILSGLSVDDLAQAVALQETGLLIKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K A S + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKDKFAIDGGTA----------LAGSNPAKSASSDVLNALLALGYNEREALAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V K+ ++ I+L+L+++S Sbjct: 171 V----KQLPADIAVAEGIKLSLKSLS 192 >gi|329296286|ref|ZP_08253622.1| Holliday junction DNA helicase RuvA [Plautia stali symbiont] Length = 204 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ V Y ++ P+ L I +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLIEAHCVGYEVHLPMTCFYELPDINQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAQQDNNDAEAEAVAALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K + AD +IR ALRA Sbjct: 181 MVSKVGKPD---ADCETLIREALRA 202 >gi|332292213|ref|YP_004430822.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus 4H-3-7-5] gi|332170299|gb|AEE19554.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus 4H-3-7-5] Length = 193 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V++D GV Y I + T LG + L +++D L Sbjct: 1 MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGRLGDS-EALKLHTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ ++R+ F LL SV G+GA A +LS + ++ ++I + I I GI K Sbjct: 60 FGFVEVMEREIFRLLLSVSGIGASTARTMLSSLDPHQIKQAIASNDVATIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + N + A+SAL LG+ + QA Sbjct: 120 AQRVILDLKDKILKVYDMSSESAVQSNTSK----------EEALSALETLGFARKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++K++ + A II+ AL+ + Sbjct: 170 CTAIVKEKPD-ASVETIIKEALKKL 193 >gi|253574942|ref|ZP_04852282.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon 786 str. D14] gi|251845988|gb|EES73996.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon 786 str. D14] Length = 206 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I L +YV++DVQGV Y ++CP + K + T++ H+R+D I L Sbjct: 1 MIDFLRGQIAHLETEYVVLDVQGVGYRVFCP-NPYAFAAKGQETVTIYTHHHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G RVA+G+LS + +V +I +N + ++PGI K Sbjct: 60 FGFPTREEQKLFRKLIEVSGIGPRVALGILSGGSPDHVVAAIHQENVSFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + E P + A L LGY + + Sbjct: 120 AQRMILDLKDKLEGVGGTLFDPVPADVGETLGDDGNPGW-PEAREGLKALGYTEAELDKV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +++ AL+ + Sbjct: 179 WHRLKDDVGPDEAVDSVMKKALKLL 203 >gi|303258188|ref|ZP_07344195.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium 1_1_47] gi|302858941|gb|EFL82025.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium 1_1_47] Length = 189 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I V+++ G+ Y I P+ T L IG+ L +R+D L Sbjct: 1 MIATIRGKILQKNPPQVVVECGGLGYEIDVPMSTFYNLPNIGEEVFLETVMIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L V G+G R+++ +LS ++A ++ +I ++ +PGI K Sbjct: 61 YGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + S ++ S I ALV LG+ + +A A Sbjct: 121 AERLVLELKDKMVVTS----------------APTVSSVQTEVIQALVALGFSEREARGA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V AD S+ IRL LR ++ Sbjct: 165 AKNV----PADADASEGIRLCLRQLA 186 >gi|222055417|ref|YP_002537779.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32] gi|254766963|sp|B9LZC5|RUVA_GEOSF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221564706|gb|ACM20678.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32] Length = 199 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D++++DV GV Y + P T L + G +L + TH+++D I L Sbjct: 1 MIALLTGKLAHKSPDFIILDVNGVGYRVQIPFSTYYALPEGGSSVSLNIFTHVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL SV G+G ++ G+LS I A L +++I + +A IPGI K Sbjct: 61 YGFRTMEEKEMFQLLISVSGIGPKLGNGILSNIEAQNLSDALIRGDLARLATIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L + ++ A + + +SALVNLGY + Sbjct: 121 AERLVLELREKVKKLGH------GPLQQDVAPADAHNDMRDDVVSALVNLGYKEAVVQKT 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + A +++ AL+ + Sbjct: 175 VDEI--GVAADATVESLLKQALKKL 197 >gi|313239182|emb|CBY14141.1| unnamed protein product [Oikopleura dioica] Length = 202 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V+++V GV Y + P+ + L IG L +R+D L Sbjct: 1 MITFLHGRLVDALPTQVVVEVHGVGYEVLIPLSSFDRLPGIGQEIHLLTHLTVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF++ +R+ F LL +V G+G R+A+ VLS + T ++ + + ++QI G+ K Sbjct: 61 YGFVTGAERELFRLLVHTVTGIGPRIALNVLSGMPPTAFRSAVATGDIRALSQISGVGRK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K S +++ +A+ ALV LG+ Q +A Sbjct: 121 TAERIIVELKDKVGSAAALETTGPGRTAGPTEK------AVHDAVLALVALGFKQPEAFE 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + A Q++R L+ Sbjct: 175 TVRAAQAALGPQATVEQLVRAGLKK 199 >gi|291524757|emb|CBK90344.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale DSM 17629] gi|291528922|emb|CBK94508.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale M104/1] Length = 205 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + D ++++ GV Y+IY P + L G+ ++ +R+D + L Sbjct: 4 MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + + +LS + A +L +I+ +SK I++ PGI K Sbjct: 64 YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + + A + + +A+ AL LGY ++ A Sbjct: 124 AQRVILDLKDKLSLEDAFEKKLENQTSG--AAVSMNSTVKNDAVMALNALGYSSTESLKA 181 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V E D +++LAL+ + Sbjct: 182 VSKVDITED--MDVEDVLKLALKNM 204 >gi|298293003|ref|YP_003694942.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506] gi|296929514|gb|ADH90323.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506] Length = 205 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L G+ TLF+ET +R+D IRL Sbjct: 1 MIGKLKGIVDSYVEDHVILDVHGVGYLVHCSARTLQQLPSPGEAATLFIETFVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ WF LLQ+VQGVGA+VA+ VLS ++ +EL ++ L + ++A+ G+ K+ Sbjct: 61 YGFASPAEKAWFTLLQNVQGVGAKVALSVLSVLSPSELANAVALGDRAMVARANGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + + Q P+ +A+SALVNLGY Q QA+ A Sbjct: 121 AARIVAELKDKAPGFADIDPAVAGLAA--QIEERHAPAPVADAVSALVNLGYAQIQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +++ AD +++IRL L+ ++ Sbjct: 179 VAAAMREAGEGADAARLIRLGLKELA 204 >gi|53804471|ref|YP_113686.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str. Bath] gi|81682299|sp|Q609L1|RUVA_METCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|53758232|gb|AAU92523.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str. Bath] Length = 201 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + +LIDVQG+ Y + P+ T L +IG L+ +R+D L Sbjct: 1 MIGFIRGLLVAKRAPSLLIDVQGLGYELDAPMSTFYNLPEIGAEVRLYTHLQIREDAHSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L V G+GA++A+ +LS I+ + + Q+S + ++PGI K Sbjct: 61 FGFGTEAERGLFRSLIRVSGIGAKLALAILSGISVDDFRACVERQDSARLVRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + L V A A A+SAL+ LG+ +A T Sbjct: 121 AERLIIELRDR---LDIGVPSLAPASFAGGAAPLPAADPADEAVSALIALGFKPQEANTL 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V ++ +IR AL++ Sbjct: 178 VA---RQAAEGRSAEDLIRAALQS 198 >gi|188580172|ref|YP_001923617.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001] gi|229560102|sp|B1Z924|RUVA_METPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|179343670|gb|ACB79082.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001] Length = 208 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 88/209 (42%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+GVLS + +L +I + +A+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + V ++ + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPVDPALVALTGAVEDRTA--PQPVADAISALVNLGYPQVQASAA 178 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 + + LK + A+ + +IRL LR ++ Sbjct: 179 IAAALKGLGDGAETVEAKTLIRLGLRELA 207 >gi|238762969|ref|ZP_04623936.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia kristensenii ATCC 33638] gi|238698727|gb|EEP91477.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia kristensenii ATCC 33638] Length = 189 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 5/189 (2%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 L++ GV Y + P+ L +G +F + +R+D L+GF +R F L Sbjct: 2 LLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K + L+ Sbjct: 62 VNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLNG 121 Query: 138 VVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + + + + S A SALV LGY +A+ V + K AD Sbjct: 122 DLFNNTGDIQLPASSSSQISDADIEAEAASALVALGYKPQEASRLVSKIAK---PGADCE 178 Query: 196 QIIRLALRA 204 +IR ALRA Sbjct: 179 TLIRDALRA 187 >gi|240144037|ref|ZP_04742638.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82] gi|257203963|gb|EEV02248.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82] gi|291536276|emb|CBL09388.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis M50/1] Length = 203 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 108/206 (52%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + E+ ++++ G+ Y IY +T L +G+ ++ H+R+D + L Sbjct: 1 MYSYIKGILRDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + + + LL V G+G + A+ +LS +T +L +++ ++K IA+ PG+ K Sbjct: 61 FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + Q+ + H A+ ALV LGY +A A Sbjct: 121 AQRLILELKDKMSLEDAFEQKFEKTGEPAENHAQGT---KNEAVQALVALGYSSSEALRA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + E+ D +I+++AL+ ++ Sbjct: 178 LNGIEITEE--TDVEEILKMALKNMA 201 >gi|86131995|ref|ZP_01050591.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia donghaensis MED134] gi|85817329|gb|EAQ38509.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia donghaensis MED134] Length = 193 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V++D GV Y I + T LG G+ L+ +++D L Sbjct: 1 MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGQLGD-GEALKLYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++R+ F LL SV G+GA A +LS + ++ ++I + I I GI K Sbjct: 60 YGFMEVMEREIFRLLLSVSGIGASTARTMLSSLEPNQIKQAIASNDVATIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + R++ +LK K + + + + N + A+SAL LG+ + QA Sbjct: 120 SQRVILDLKDKILKVYDISTESAVQSNTNK----------EEALSALETLGFARKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++ K++ + A II+ AL+ + Sbjct: 170 CLAITKEKPD-ASVETIIKEALKKL 193 >gi|238924017|ref|YP_002937533.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium rectale ATCC 33656] gi|238875692|gb|ACR75399.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium rectale ATCC 33656] Length = 205 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + D ++++ GV Y+IY P + L G+ ++ +R+D + L Sbjct: 4 MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + + +LS + A +L +I+ +SK I++ PGI K Sbjct: 64 YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + + A + + +A+ AL LGY ++ A Sbjct: 124 AQRVILDLKDKLSLEDAFEKKLENQASG--AAVSMNSTVKNDAVMALNALGYSSTESLKA 181 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V E D +++LAL+ + Sbjct: 182 VSKVDITED--MDVEDVLKLALKNM 204 >gi|90022179|ref|YP_528006.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus degradans 2-40] gi|122996073|sp|Q21HN5|RUVA_SACD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89951779|gb|ABD81794.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus degradans 2-40] Length = 207 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + ++LID+ GV Y + P+ T L +G+ L + + +L Sbjct: 1 MIGRLTGILAEKKAPHLLIDIGGVGYDVIAPMTTFYRLPALGEKAVLHTHFSVSETSQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S DR+ F +L V GVG ++A+G++S + +++ + ++ N + ++PG+ K Sbjct: 61 FGFSSQQDRELFRMLIKVNGVGPKLAVGIMS-MESSDFAKCVLDGNLTALVKLPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----AHICSMPSFAINAISALVNLGYGQDQ 176 A R++ +++ + +L + + + + +A SAL+ LGY + Sbjct: 120 AERLLVDMRDRVKALDTTPSEHSPTGEGAGIVRVDPVINTNVIIADAESALIGLGYKPTE 179 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A AV + I +IR AL+ + Sbjct: 180 AAKAVSAAY--NDTITTSEDLIRAALKGM 206 >gi|153814820|ref|ZP_01967488.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756] gi|331089652|ref|ZP_08338551.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 3_1_46FAA] gi|145847851|gb|EDK24769.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756] gi|330405020|gb|EGG84558.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 3_1_46FAA] Length = 204 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + E +IDV G+ Y ++ P + L+ L +G+ L+ ++R+D ++L Sbjct: 1 MISYVKGELAAIEEQKAIIDVGGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS ++ EL +I+ ++K+I+ PGI K Sbjct: 61 FGFLTKDDLEIFRLVIGVSGIGPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178 A +++ EL+ K + ++ Q + S A+ ALV LGYG ++ Sbjct: 121 AEKLIVELRDKV-DIEKMLDHAAHPEETIQTDMAKTSANEMQSEAVQALVALGYGSAESL 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV K I++ AL+ + Sbjct: 180 RAVK---KTSVQCQTVEDILKEALQYL 203 >gi|319778457|ref|YP_004129370.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9] gi|317108481|gb|ADU91227.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9] Length = 191 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 110/205 (53%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG + + V ID+ G+ Y + + + L ++G TLF +R+D L Sbjct: 1 MISRLKGKLIYKFPPTVCIDIGGIAYDVDVSLTSFYELPEVGQEVTLFTHLAVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ +R F L V G+G + A+G+LS ++ L +I Q+S + ++PGI K Sbjct: 61 YGFISEDERATFRTLIKVNGIGFKSALGILSGMSPDALYNAIEEQDSSQLERVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELKGK +S++ + N + + AL+NLGY + QA A Sbjct: 121 AARIILELKGKLPEISTLNNTTSNLKNHN------------DVLIALLNLGYSEKQAKLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K D S+ +R+ALR++ Sbjct: 169 ISTLPKD----IDASEGVRIALRSM 189 >gi|292490335|ref|YP_003525774.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4] gi|291578930|gb|ADE13387.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4] Length = 199 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L++VQGV Y + P+ T L G L+ +R D L Sbjct: 1 MIGRLRGVLLEKRAPFLLLEVQGVGYELEAPMSTFYVLPDRGAEVILYTHLVVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F S+ +R+ F L V GVGA++ + +LS I + ++ + ++PG+ K Sbjct: 61 YAFASEKERELFRNLIRVNGVGAKLGLAILSGIEVESFTRCVQEGDTASLTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + S +A+SALV LGY A+ Sbjct: 121 AERLIVEMRDRLFD------GPREEMAGVLPRVGSGQVPTSDAVSALVALGYKSQDASRM 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + +IIR AL+ + Sbjct: 175 VRQL---NTEGLATEEIIRQALQRM 196 >gi|269103018|ref|ZP_06155715.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp. damselae CIP 102761] gi|268162916|gb|EEZ41412.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp. damselae CIP 102761] Length = 187 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 7/188 (3%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 G+ Y + P+ L ++G +F +R+D L+GF +R+ F + GV Sbjct: 2 GGIGYEVQMPMSCFYELPEVGQEAIIFTHFVVREDAQLLYGFNKKSERELFREVIKANGV 61 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS---- 137 G ++ + +LS +TA++ V S+ ++ + +IPG+ K A R++ E+K + Sbjct: 62 GPKLGLAILSAMTASQFVLSVEQEDITTLVKIPGVGKKTAERLLVEMKDRLKGWGEGDLF 121 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 QD + N + S A+SALV LGY QA+ V V + E + I Sbjct: 122 TPAQDTAASNAPIQNPSSQARAEDEAVSALVALGYKPQQASKVVSQVAQPEMS---SETI 178 Query: 198 IRLALRAI 205 IR ALR++ Sbjct: 179 IREALRSM 186 >gi|295399354|ref|ZP_06809336.1| Holliday junction DNA helicase RuvA [Geobacillus thermoglucosidasius C56-YS93] gi|312110086|ref|YP_003988402.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1] gi|294978820|gb|EFG54416.1| Holliday junction DNA helicase RuvA [Geobacillus thermoglucosidasius C56-YS93] gi|311215187|gb|ADP73791.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1] Length = 199 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P S T++ ++R+D + L Sbjct: 1 MIEFIRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDMLAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ +LVE+I +N + + PG+ K Sbjct: 60 YGFRTREERALFAKLLQVSGIGPKGGLAILAAGRPEQLVEAIEQENETFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++++ D+ +E +H+ S AI AL LGY + + Sbjct: 120 ARQMILDLKGKLTAVAARTYPDLFHPEEEPSHL----SALEEAIEALKALGYAEREIQKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S++K+ Q ++ AL+ + Sbjct: 176 VPSLMKEN---LSTDQYVKRALQQL 197 >gi|300770096|ref|ZP_07079975.1| crossover junction ATP-dependent DNA helicase RuvA [Sphingobacterium spiritivorum ATCC 33861] gi|300762572|gb|EFK59389.1| crossover junction ATP-dependent DNA helicase RuvA [Sphingobacterium spiritivorum ATCC 33861] Length = 194 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M G + +V++DV G+ Y I+ + T S L K + C LF+ +R+D L Sbjct: 1 MYEYFNGKLVFKAPTHVVLDVNGIGYYIHISLNTFS-LIKDQENCKLFISFQVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L SV G+G +LS IT E+ +II VI +I GI K Sbjct: 60 FGFANEGERQLFEHLISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + S S A+SAL+ LG+ ++QA Sbjct: 120 AQRLILELQDKLKKQGP---------DALISPVASKQSVPEEALSALIMLGFVKNQAEKV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +++ E ++ Q+I+LAL+ + Sbjct: 171 LNTIINTEPDL-SVEQLIKLALKRL 194 >gi|220921373|ref|YP_002496674.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS 2060] gi|254767374|sp|B8IM27|RUVA_METNO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219945979|gb|ACL56371.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS 2060] Length = 205 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L +G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGVVDSYGEDFVILDVHGVGYVVHCSARTLQRLPPVGEAADLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+GVLS + +L +I + IA+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPADLATAIATGDKGAIARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + V + + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPVDPALIRLAGAVEERTA--PQPVADAISALVNLGYPQIQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + L+ A+ +IRL LR ++ Sbjct: 179 VAAALQGAGEGAEAKTLIRLGLRELA 204 >gi|319943009|ref|ZP_08017292.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia mirabilis ATCC 51599] gi|319743551|gb|EFV95955.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia mirabilis ATCC 51599] Length = 195 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y I P+ TL L G TL+ +R+D L Sbjct: 1 MIGRIHGTLVLANPPEILVDAHGVGYEISVPMSTLYELPPPGQTVTLWTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F + V G+G R+A+ VLS ++ +L ++ Q + + ++PG+ K Sbjct: 61 YGFLTESERTAFRAMIRVSGIGPRMALAVLSGLSVDDLSRAVAEQETGRLTRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK SS + Q + ++ S + + AL+ LGY + ++ A Sbjct: 121 AERLLLELKGKLALASSGI----------QINDQALFSSGDDILRALLALGYSEKESNAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + IR AL+ + Sbjct: 171 IAKL----PEGVNVNDGIRQALKLL 191 >gi|258514397|ref|YP_003190619.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans DSM 771] gi|257778102|gb|ACV61996.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans DSM 771] Length = 203 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + + V++DV GV Y I+ P S L G+ L +++D ++L Sbjct: 1 MIAFLRGKIVFIEANSVVLDVSGVGYRIFVPASCQSKLPAAGEEMLLLTYLSVKEDSLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F++L +V G+G + A+ VLS ++ +L ++ ++ K + ++PGI K Sbjct: 61 YGFIEQQERELFVMLLNVGGIGPKGALSVLSCLSPAQLYLAVAREDIKAVMKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + A +A+ AL LGY +A Sbjct: 121 AQRLILELKDKLKGRVQPGEETTPET------VSGSQNEAEDALFALEALGYSVSEAIVV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V VL+ S++++ AL+ + Sbjct: 175 VQEVLRSSSKNISASELLKNALQKLDA 201 >gi|170746561|ref|YP_001752821.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans JCM 2831] gi|229560103|sp|B1M6A3|RUVA_METRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170653083|gb|ACB22138.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans JCM 2831] Length = 205 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV YI++C RTL + K+G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGVVDSFGEDFVILDVSGVGYIVHCSARTLQRMPKVGEPAELSIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVGARVA+GVLS + L +I + I++ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGARVALGVLSVLEPEALASAIATGDKGSISRAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R+ ELK KA + + V ++ + P +A+SALVNLGY Q QA A Sbjct: 121 AARLAAELKDKAPAFAPVDPALVALAG--AVEEGAAPQPVADAVSALVNLGYPQVQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + LK A+ +IRL LR ++ Sbjct: 179 IAAALKGAGEGAEAKVLIRLGLRELA 204 >gi|86140746|ref|ZP_01059305.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella blandensis MED217] gi|85832688|gb|EAQ51137.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella blandensis MED217] Length = 193 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + V+I+ GV Y + + T S L + G+ L+ H+++D L Sbjct: 1 MITFLRGKLIEKNHTDVVIECHGVGYFVNISLHTFSLLPE-GESIMLYTYLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F LL SV GVG +A +LS + +++ ++I + K I + GI K Sbjct: 60 YGFAHKSEREIFKLLISVSGVGTSIARTMLSSLEPSQVKQAIATGDVKTIQGVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + + + A+SAL LG+ + QA Sbjct: 120 AQRVILDLKDKILKVYDI----------NEVSPIADNTNKEEALSALETLGFARKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++++ E A II+LAL+ + Sbjct: 170 CTTIVRDEPQ-ASVETIIKLALKKL 193 >gi|50085685|ref|YP_047195.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. ADP1] gi|49531661|emb|CAG69373.1| holliday junction helicase subunit A [Acinetobacter sp. ADP1] Length = 204 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 4 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++ F L V GVG ++A+G+LS ++ + +I + + ++PG+ K Sbjct: 63 YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +LS VQ S S A +AL +LGY +A A Sbjct: 123 AERLMIELRDRFKALS--VQATTGSTVTSAQIQFSSNSPIAEAEAALQSLGYKPIEAQKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V AD +IR AL+++ Sbjct: 181 IAAVKADYTEAAD---LIRAALKSM 202 >gi|254787341|ref|YP_003074770.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901] gi|259495657|sp|C5BQT5|RUVA_TERTT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|237687527|gb|ACR14791.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901] Length = 206 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ GN+ +++D+ GV Y + P+ T L ++ L + + +L Sbjct: 1 MIGRLTGNLVVKQAPNLMVDINGVGYDLLAPMSTFYQLPELDAKVVLHTHFAVSETSQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ DR++F +L V GVG ++A+G++S + ++V I+ N + ++PG+ K Sbjct: 61 FGFIDQQDREFFRMLIKVNGVGPKMAVGIMS-METNDIVRCILEDNLNALVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDM-SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ K S D + + S + A SALV LGY +A+ Sbjct: 120 AERLIIEMRDKLKSWQVTPSVDATGSLVALDSAAPSQNAIVAEAESALVALGYKPVEASK 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V E I +IRLALR + Sbjct: 180 AVARVTSDE--ITRSEDLIRLALRNM 203 >gi|255526659|ref|ZP_05393564.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] gi|296187164|ref|ZP_06855561.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] gi|255509639|gb|EET85974.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] gi|296048199|gb|EFG87636.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] Length = 197 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 110/205 (53%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G G+ +DY++++ G+ Y IY TL+ + KI + L+++ +R+D I L Sbjct: 1 MYEYIRGTYAGMNKDYIVVENNGIGYKIYTSGSTLAKIPKINEEIMLYLQQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL S+ GVGA+ A+ +LS + L +I+ + K+I + PGI K+ Sbjct: 61 YGFLTKEELSMFNLLLSINGVGAKAALSLLSISSVNNLKYAILSGDEKLITRAPGIGKKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI+ ELK K +D+ + I + A+ ALV LGY + +A A Sbjct: 121 SQRIILELKDKVK------PEDVDISQGDTIEIDETAGNSSEALEALVALGYSEKEANKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ KK+ IIR AL+ + Sbjct: 175 INTIDKKD----SVENIIRNALKFL 195 >gi|264680422|ref|YP_003280332.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2] gi|262210938|gb|ACY35036.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2] Length = 191 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L + G+G R+A+ VLS ++ +L +++ Q + + ++PGI K Sbjct: 61 FGFGTARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + + + AL+ LGY +A+ A Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNNDQNDIQQALMALGYSDKEASAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LKK S+ I+LAL+A+ Sbjct: 169 ----LKKLPPDVGVSEGIKLALKAL 189 >gi|254449000|ref|ZP_05062454.1| Holliday junction DNA helicase RuvA [gamma proteobacterium HTCC5015] gi|198261394|gb|EDY85685.1| Holliday junction DNA helicase RuvA [gamma proteobacterium HTCC5015] Length = 205 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 105/204 (51%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + ++L+DV GV Y + P+ T+ L G + + TH+R+D I+L Sbjct: 1 MIGRLSGTLISKQAPHLLVDVNGVGYEVEAPLSTVFELPAEGQAVVVLIHTHVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F +D++R++F L + GVGA++A+ ++S +A + + +++ + ++PG+ K Sbjct: 61 FAFGTDIERRFFRSLIKINGVGAKMALAIMSGASAETFAQWVDQEDTAALTKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + A + S A++AL LGY +A Sbjct: 121 AERLVIEMRDRLDKEVFMGAVPSLPKAGVSATASAPMSREDEAVAALEGLGYRAAEARKM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + + ++IRLAL+ Sbjct: 181 VAKVAQDDLP---TEEMIRLALQQ 201 >gi|329118736|ref|ZP_08247436.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria bacilliformis ATCC BAA-1200] gi|327465171|gb|EGF11456.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria bacilliformis ATCC BAA-1200] Length = 193 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + ++IDV G+ Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGTLAEKHPPQIVIDVNGIGYEAEVSMQTFCALPPVGETVRLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS + EL +++ ++ K ++ PGI K Sbjct: 61 FGFADAEERAAFRQLVKVGGIGAKTALGILSAMNTAELAQAVAQEDVKRLSAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + + L+ LGY + +A A Sbjct: 121 AERMILELRGKL----------APANVSGGLAAPAQQDGGEDIVQTLLALGYSEREARAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 171 AKGI----PPGTEVGEGVRLALKNL 191 >gi|30248236|ref|NP_840306.1| Holliday junction DNA helicase subunit [Nitrosomonas europaea ATCC 19718] gi|44888448|sp|Q820S3|RUVA_NITEU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|30180121|emb|CAD84123.1| probable Holliday junction DNA helicase subunit [Nitrosomonas europaea ATCC 19718] Length = 195 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 14/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + VL+DV G+ Y I P+ T L IG+ TL +R+D L Sbjct: 1 MIGRIAGLLLEKHPPLVLVDVNGIGYEIDVPMSTFCRLPGIGEQVTLHTHFWVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+++ +R F L + G+GAR + +LS ++ +L + ++ Q+S + +IPGI K Sbjct: 61 FGFMTEPERVLFRQLTKISGIGARTGLAILSGLSVNDLHQIVVSQDSTRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + S + ++AL LGY +A A Sbjct: 121 AERLLLELRDKI----------SPAITLPETGTAMASSTDKDILNALSALGYNDREANWA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + S I +LR +S Sbjct: 171 VGQL----SEGVTVSDGIMQSLRLLS 192 >gi|326622940|gb|EGE29285.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 187 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 3/187 (1%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 L++ GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 LLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 62 TNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 + + + A++ALV LGY +A+ V + + + A + Sbjct: 122 DLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSETL 178 Query: 198 IRLALRA 204 IR ALRA Sbjct: 179 IRDALRA 185 >gi|226324735|ref|ZP_03800253.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758] gi|225207183|gb|EEG89537.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758] Length = 203 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L ED V++DV GV Y I+ + + L +G + ++++D ++L Sbjct: 1 MISYIRGELVALEEDKVIVDVGGVGYGIFMSGQAMGQLPPVGSKVKIHTYLNVKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ F LL V G+G + +G+L+++T EL +++ ++ K I+ PGI K Sbjct: 61 YGFLNRDALSVFKLLIGVSGIGPKGGLGILAQLTPDELRFAVMSKDIKAISTAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + V+ + N + +A+ AL LGYG +A A Sbjct: 121 AEKLIVELKDKL-KIEDVLDHQVEAANGADEDTVNAQGLQADAVQALTALGYGSTEALQA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + +++ AL+ + Sbjct: 180 VRKV--EMDESTTVEDLLKGALKYL 202 >gi|262368599|ref|ZP_06061928.1| Holliday junction helicase subunit A [Acinetobacter johnsonii SH046] gi|262316277|gb|EEY97315.1| Holliday junction helicase subunit A [Acinetobacter johnsonii SH046] Length = 200 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL ++ F L V GVG ++A+G+LS ++ L+ ++ ++ + ++PG+ K Sbjct: 60 YGFLHQQEKIIFRTLLKVNGVGPKMALGILSTLSVDMLIHTVEHEDINTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + ++SS S V + Q + S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKAMSSGAAPSNSTVEQIQF---TGNSAVAEAEAALQSLGYKPLEAQKL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + + + S IIR AL++++ Sbjct: 177 VSAA---KGDFTEASDIIRAALKSMN 199 >gi|221064959|ref|ZP_03541064.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1] gi|220709982|gb|EED65350.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1] Length = 191 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L + G+G R+A+ VLS ++ +L +++ Q + + ++PGI K Sbjct: 61 FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + S + AL+ LGY +A+ A Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNSEQNDIQQALMALGYSDKEASAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LKK S+ I+LAL+A+ Sbjct: 169 ----LKKLPPEVGVSEGIKLALKAL 189 >gi|319407733|emb|CBI81380.1| holliday junction DNA helicase RuvA [Bartonella sp. 1-1C] Length = 215 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 77/208 (37%), Positives = 130/208 (62%), Gaps = 1/208 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E ++ D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + I++ PG+ K+ Sbjct: 61 FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK K + S ++ + + +A+ AL+ LG+ D+ATTA Sbjct: 121 SERIVSELKNKTLQFSKEDNKNPAFSSSLTFSSEEEYQPTNDALLALIKLGFDHDKATTA 180 Query: 181 VVSVLKKEK-NIADDSQIIRLALRAISC 207 + S + K + ++R +L+ +S Sbjct: 181 LASAVSALKGETVSSALLVRHSLKLLSS 208 >gi|284039351|ref|YP_003389281.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74] gi|283818644|gb|ADB40482.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74] Length = 198 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V+IDV GV Y ++ ++T + L GD LF+ R+D L Sbjct: 1 MIAYLDGTLSHKEATHVIIDVHGVGYSVHISLQTYAVLPGGGDRIKLFIHHLFREDSQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ L V GVG A+G+LS + +L +I+ +N + + I GI K Sbjct: 61 YGFANADEKSLFLDLIGVSGVGPNTALGMLSAMQPGDLRLAILGENVRAVQAIKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K V + +++ALV LG+ + A + Sbjct: 121 AQRIILELRDKMKRAGVVPD------GPSYRQQAAANPVREESLAALVALGFPKPTAEKS 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V LK + + +IR ALR Sbjct: 175 VDDALKADPAL-SVEDVIRRALRQ 197 >gi|171915820|ref|ZP_02931290.1| Holliday junction DNA helicase motor protein [Verrucomicrobium spinosum DSM 4136] Length = 203 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ + + +DV GV Y+ P+ T L L ++ + L Sbjct: 1 MIAYLRGHLVEALPNQLTVDVNGVGYLCLVPLSTYDRLAGTQGEVRLLTHLNITERDHTL 60 Query: 61 FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGF + +R F LL + V G+G ++A+ VLS + + +++I + +++I G+ K Sbjct: 61 FGFATAEERDLFRLLINRVSGIGPKMALAVLSGMAVGDFKDNVIRNDVTALSRISGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K + + + + +A+ AL+ LG+ Q +A Sbjct: 121 TAERIVLELKDKVGIVDTW---QAARSTGNSLVPDPTQAAQTDAVLALIALGFKQTEAQK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V ++KK + ++IR ALR + Sbjct: 178 TVQDLVKKAGGVVSADKLIRDALRNL 203 >gi|58425878|gb|AAW74915.1| holliday junction binding protein, DNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 212 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 19 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 79 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 138 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 139 AERMVVELRDRAADFSSGAPITGQL----------GPDAISEATVALQQLGYKPAEAARM 188 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A +IR AL+A Sbjct: 189 ARDAGAEGGEVA---TVIRKALQA 209 >gi|302386617|ref|YP_003822439.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum WM1] gi|302197245|gb|ADL04816.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum WM1] Length = 202 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + ++ED V+I+ V + I+ P+ L L IG L+ +R+D + L Sbjct: 1 MISFIKGPLAEIFEDTVVIESGNVGFEIHAPLSVLEKLPGIGVEIKLYTYFQVREDAMCL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D Q F L SV G+G + A+G+LS + EL +II ++K I++ PG+ K Sbjct: 61 FGFLNRQDLQMFQQLISVNGIGPKGALGILSALRPEELRRAIISGDAKAISKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + S + + A+ AL LGY +A A Sbjct: 121 AQRIILDLKDKI----DLAEILPSGFTESADKVILSGGVTEEALEALTALGYSAAEAGRA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V + +++ +L+ ++ Sbjct: 177 VRQV--EVTESMTVEDVLKASLKHLA 200 >gi|163753887|ref|ZP_02161010.1| Holliday junction DNA helicase [Kordia algicida OT-1] gi|161326101|gb|EDP97427.1| Holliday junction DNA helicase [Kordia algicida OT-1] Length = 193 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + V+I+ GV Y I + T S + + LF H+R+D L Sbjct: 1 MITHIQGKLVEKNPTDVVIECNGVGYFINISLTTYSQIPN-QENIKLFTHLHVREDAQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LL SV G+G A +LS +T+ ++ E+I + I + GI K Sbjct: 60 YGFFQKAERAVFRLLISVSGIGTSTARTMLSSLTSEQICEAIGSGDVPTIQGVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + L + + MS N + +SAL LGY + Q+ Sbjct: 120 AQRVIIELKDKVLKLYDLDEVSMSQNNTNK----------EETLSALEVLGYTRKQSERV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++K E Q+I++AL+ + Sbjct: 170 LDKIIK-EMPAGSVEQLIKMALKNL 193 >gi|227538550|ref|ZP_03968599.1| crossover junction endodeoxyribonuclease [Sphingobacterium spiritivorum ATCC 33300] gi|227241469|gb|EEI91484.1| crossover junction endodeoxyribonuclease [Sphingobacterium spiritivorum ATCC 33300] Length = 194 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M G + +V++DV G+ Y I+ + T + L K + C LF+ +R+D L Sbjct: 1 MYEYFNGKLVFKAPTHVVLDVNGIGYYIHISLNTFA-LIKDQENCKLFISFQVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L SV G+G +LS IT E+ +II VI +I GI K Sbjct: 60 FGFATEGERQLFEHLISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + + S A+SAL+ LG+ ++QA Sbjct: 120 AQRLILELQDKLKKQGP---------DALISPVATKQSVPEEALSALIMLGFVKNQAEKV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +++ E ++ Q+I+LAL+ + Sbjct: 171 LNTIINTEPDL-SVEQLIKLALKRL 194 >gi|254496522|ref|ZP_05109393.1| holliday junction DNA helicase [Legionella drancourtii LLAP12] gi|254354261|gb|EET12925.1| holliday junction DNA helicase [Legionella drancourtii LLAP12] Length = 199 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G+I ++++V GV Y + + T L + L + T +R+D + Sbjct: 1 MIGWLDGHIVDKHQPGKLVLNVNGVGYDVETSLNTFFQLDTLSGSIGLHIHTVVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVG ++A+ +LS IT E ++ I + + + ++PGI K Sbjct: 61 LYGFLDKQERALFRALIKVNGVGPKMAIAILSSITPNEFIQCIKQEKAAFLTKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ S + ++ A+SAL LGY +A Sbjct: 121 TAERLVIEMRDSIKQFSE-------PASDLSLKPINLIRGQDEAVSALEALGYKPQEALK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + K+ Q+IR AL+ +S Sbjct: 174 AVNKLDDGHKS---CEQLIREALQILS 197 >gi|88801662|ref|ZP_01117190.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii 23-P] gi|88782320|gb|EAR13497.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii 23-P] Length = 193 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V++D GV Y+++ + T + L + L+ +R+D L Sbjct: 1 MITQVRGRLVEKNPTEVVVDCNGVGYLLHISLNTYAALPA-DENVVLYTHLSVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R F L SV GVG +A +LS +TA E+ ++I +N +I + GI K Sbjct: 60 FGFINKTERAIFKFLISVSGVGPSIARTMLSSMTAEEIQQAIASENVALIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + MS N + A+SAL LG+ + Q+ Sbjct: 120 AQRVIVDLKDKIVKTFDLDEVSMSPSNTNKG----------EALSALEVLGFQRKQSDKL 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++K+ N A QII+LAL+++ Sbjct: 170 VATIVKEYPN-ATIEQIIKLALKSL 193 >gi|171464161|ref|YP_001798274.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229560114|sp|B1XS25|RUVA_POLNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171193699|gb|ACB44660.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 193 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + ++ +L+D QG+ Y + P+ TL L + G TL +R+D +L Sbjct: 1 MIGRIQGTLVSVHPPRLLVDCQGISYEVDVPMSTLYQLPQAGQKITLLTHFQVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R+ F L + GVG+R A+ VLS ++ EL ++I LQ + + Q+PGI + Sbjct: 61 FGFATETEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKRT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELKGK V + + + AL+ LGY + +A A Sbjct: 121 AERLCLELKGKLAPDLGVAGGKPQAI-----------ETSSEVLQALLALGYSEKEALLA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + S IR+ L+ +S Sbjct: 170 LKQI----PADTSISDGIRMGLKYLS 191 >gi|90134315|sp|Q6F992|RUVA_ACIAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 201 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++ F L V GVG ++A+G+LS ++ + +I + + ++PG+ K Sbjct: 60 YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +LS VQ S S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKALS--VQATTGSTVTSAQIQFSSNSPIAEAEAALQSLGYKPIEAQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V AD +IR AL+++ Sbjct: 178 IAAVKADYTEAAD---LIRAALKSM 199 >gi|319899376|ref|YP_004159473.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella clarridgeiae 73] gi|319403344|emb|CBI76903.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella clarridgeiae 73] Length = 213 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 79/208 (37%), Positives = 129/208 (62%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ +L ++I L + +I++ PG+ K+ Sbjct: 61 FGFTTKSEKEWFCLLQNVPGVGAKVALALLGTLSINDLSQAITLNDIAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK K +L S + +A+ AL+ LG+ DQA TA Sbjct: 121 SERIVSELKNK--ALLSKENNKSFAFSSSSLPSEEKHQPTNDALLALIKLGFDHDQAATA 178 Query: 181 VVSVLKKEK-NIADDSQIIRLALRAISC 207 V S L K + ++R +L+ +S Sbjct: 179 VTSALSSLKGETVSSALLVRHSLKLLSS 206 >gi|153810824|ref|ZP_01963492.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174] gi|149833220|gb|EDM88302.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174] Length = 203 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + E+ V+++ G+ Y I+ ++ + +I + +R+D ++L Sbjct: 1 MISFIRGLVADTTENAVILENNGIGYEIFMTGSSIEQVSRIDGEVKIHTYFQVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + A+GVL+ +TA EL +++ + K I++ PGI K Sbjct: 61 YGFLSKDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + ++ + A AL+ LGY A A Sbjct: 121 AQKLILELKDKLKLEDAFEKKLAHEQEAASVSGFLIHDGRQEAAEALIALGYSSTDAMKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + D +++ AL+ + Sbjct: 181 VRKVTDVSPD--DVEALLKAALKQL 203 >gi|294678733|ref|YP_003579348.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB 1003] gi|294477553|gb|ADE86941.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB 1003] Length = 222 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I D+VLIDV+GV YI++ RT + L +G+ C L+ E +R+D ++L Sbjct: 1 MIGRIAGVILHRAMDHVLIDVRGVGYIVHVSSRTAANLPPVGEACALYTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + + ++ L + I PG+ K+ Sbjct: 61 FGFPTLIEKEWHRLLTSVQGIGAKASLAILGTLGPEGVSRALALGDWNAIKAAPGVGPKL 120 Query: 121 ASRIMTELKGKAISL--------------SSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 A R++ ELK KA ++ ++++ V + +F A+SA Sbjct: 121 AQRVVMELKDKAPTVMAMGGTLTVDTAPSDALIETAPKPVKRPAPAATRQVNFTAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGY A TAV + D +++IR ALR ++ Sbjct: 181 LTNLGYSPSDAATAVARA-SENPEATDTAKLIRTALRLLA 219 >gi|118594338|ref|ZP_01551685.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium HTCC2181] gi|118440116|gb|EAV46743.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium HTCC2181] Length = 193 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+IKG + +LID QGV Y I P+ T L G TL +R+D L Sbjct: 1 MIGRIKGYLLEKIPPIILIDCQGVGYEIEVPMTTFFDLPDEGSEITLLTHLIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L V G+GA+VA+ +L I +++L ++I + ++ +IPGI K Sbjct: 61 FGFATAAERQMFRQLIKVNGIGAKVALSILGSIGSSDLADAIQHDDINMLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + L + + + +AL++LGY A+ A Sbjct: 121 AERLVLELKDRLKDLHIDPS------------VKKHATHIEDIENALISLGYSAKDASMA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +L + +I D IR AL+++S Sbjct: 169 I-KLLPENISINDG---IRQALKSLS 190 >gi|160942099|ref|ZP_02089414.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC BAA-613] gi|158434990|gb|EDP12757.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC BAA-613] Length = 209 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + ED ++++ V I+ P+ L L +G T++ +R+D + L Sbjct: 1 MISYVKGPLMAIEEDVIVVEAGHVGLAIHVPVSLLPELPGMGKEVTVYTYFQVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL DR F L V G+G + A+G+LS + +L +I+ ++ K +A+ PGI K Sbjct: 61 YGFLHSQDRDMFRQLLGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120 Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ +LK K L ++ A + + A A+ ALV LGY +A Sbjct: 121 AQRLILDLKDKISMDDVLGNMAGGAGMGAADTGASVAGLVEAAKEAVQALVALGYTNTEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + AV V + + +++ +L+ +S Sbjct: 181 SRAVKQV--EVTDGMTSEDVLKASLKHLS 207 >gi|295109923|emb|CBL23876.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus obeum A2-162] Length = 203 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 2/203 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + E+ V+++ G+ Y I+ ++ + + H+R+D ++L Sbjct: 1 MISFIRGLVADTTENSVILEAGGIGYEIFMTGSSIEQASRSDGKVKIHTYFHVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + A+GVL+ +TA EL +++ + K I++ PGI K Sbjct: 61 YGFLSRDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + ++ + A+ ALV LGY +A A Sbjct: 121 AQKLILELKDKLKLEDAFEKKLAHEQEAADISGSVLHDGRQEAVEALVALGYSSTEAMKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V + D +++ AL+ Sbjct: 181 VRKVTDVSPD--DVEGLLKAALK 201 >gi|78485238|ref|YP_391163.1| Holliday junction DNA helicase RuvA [Thiomicrospira crunogena XCL-2] gi|123755243|sp|Q31H84|RUVA_THICR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78363524|gb|ABB41489.1| Holliday junction DNA helicase subunit RuvA [Thiomicrospira crunogena XCL-2] Length = 200 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 109/204 (53%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +LI+V GV Y + P+ T +G++GD L H+R+D + L Sbjct: 1 MIGFLSGTLHAKLPPQILINVNGVGYEVEAPMSTFYAIGEVGDEVMLLTHMHVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+L+R F L V G+GA++A+G+LS ++ + V + + ++ + +IPG+ K Sbjct: 61 FGFASELERSLFKELIKVNGIGAKMAIGILSAMSVNDFVGLVDVGDAPALTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + S V+ + + + +A+ AL++LGY QA Sbjct: 121 AERLVIEMRDRLKGWGN---GASSNVSSKTMVSSAPHNQKASAVEALISLGYKTAQADKM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +V ++ + I+ AL++ Sbjct: 178 VQAV----ESGLSLEETIKKALQS 197 >gi|303231814|ref|ZP_07318530.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-049-V-Sch6] gi|302513521|gb|EFL55547.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-049-V-Sch6] Length = 202 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ + + S + Q+ + + AI ALV+LGY Q Sbjct: 120 AERLVLELKDKLVKMTQISVETPSAI---QSIGVTHSGPSGEAIEALVSLGYAQKDVEAL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ D S +I+ L + Sbjct: 177 VESL---NDGSKDVSALIKACLVEL 198 >gi|313904087|ref|ZP_07837467.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6] gi|313471236|gb|EFR66558.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6] Length = 203 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG IE + ED V++D G+ + ++ P +L+ + G+ L+ ++QD + L Sbjct: 1 MIGFIKGVIEEITEDSVVVDNNGIGWQVFVPGSSLAGNIRQGEEIKLYTYLSVKQDSLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ DR+ F+ L V G+G + A+G+LS ++A +L +++ ++ IA+ PGI K Sbjct: 61 FGFLNRDDREVFIRLLDVSGIGPKGALGILSVMSADDLRFAVLSDDAAAIAKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A + + ELK K L ++ ++ ++ + +A+ ALV LGY +A A Sbjct: 121 AQKAVLELKDKF-KLDDAFEKKLAHEQEKAGAAAAQAGAETDAVQALVALGYSGTEAMQA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D I++ AL+ + Sbjct: 180 VRKV--GAGEDMDSEAILKAALKYL 202 >gi|254468402|ref|ZP_05081808.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13] gi|207087212|gb|EDZ64495.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13] Length = 189 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + +V +D G+ Y I P+ T L ++ L V +R+D L Sbjct: 1 MIGSIRGILIDRSPPWVQVDCGGIGYEIEVPMSTYYHLPELQSDIFLHVHMVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F L + G+GA+VA+ +LS ++ + +I Q+ ++ +IPGI K Sbjct: 61 FGFLTKEEKSSFKSLIKINGIGAKVALSILSGVSMDQFSNAIEQQDVSLLVKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K QD+ Q + + AL LGY + Sbjct: 121 AERLIVELKDK---------QDLKLQQSSQ-----HSKNLTDIMDALEALGYSKSDIQKV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + K + ++ I+ AL+ +S Sbjct: 167 I----KNFNEDINVNEGIKQALQWLSS 189 >gi|163855209|ref|YP_001629507.1| Holliday junction DNA helicase RuvA [Bordetella petrii DSM 12804] gi|229560006|sp|A9I8F2|RUVA_BORPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163258937|emb|CAP41236.1| holliday junction DNA helicase [Bordetella petrii] Length = 190 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 106/205 (51%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +DV G+ Y I P+ TL L ++G TL +R+D L Sbjct: 1 MIGRITGTLIEKLPPTICVDVNGLGYDIEVPMSTLYALPELGARVTLHTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ ++L ++I LQ S + ++PGI K Sbjct: 61 YGFATAAERGAFRELIKVSGIGARTALSVLSGLSVSDLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A ++P + ++AL+ LGY ++ A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATAHAVPDSQTDILNALLALGYSDKESQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LKK S+ IRLAL+A+ Sbjct: 168 ----LKKLPEGTGVSEGIRLALKAL 188 >gi|163786536|ref|ZP_02180984.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1] gi|159878396|gb|EDP72452.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1] Length = 193 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + V+ID GV Y I + T S + + L+ +R+D L Sbjct: 1 MITHLEGKLVEKNPTDVVIDCNGVGYFINISLHTFSQIPDR-ENLRLYTYLQVREDSHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F LL SV G+GA A +LS +T ++ E I + +I + GI K Sbjct: 60 YGFSSKTEREIFKLLISVSGIGANTARTMLSSLTPDQVKEGIASGDVALIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + ++ + + A+SAL LG+ + Q+ Sbjct: 120 AQRVIIDLKDKVLKVYGI----------DELSLIPNNTHKDEALSALDVLGFNKKQSEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L+ + + A QII+ AL+ + Sbjct: 170 VDRILQTQPD-ALVEQIIKEALKNL 193 >gi|167627795|ref|YP_001678295.1| Holliday junction DNA helicase RuvA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597796|gb|ABZ87794.1| Holliday junction DNA helicase, subunit A [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 218 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG+I +L+ +R+D +L Sbjct: 2 MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQVSLYTHFVVREDAQQL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +D++ F L V G+GAR A+ +LS + +T L+ I ++ ++A +PGI K Sbjct: 62 YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK---------EQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + Q S ++ AL+ LG Sbjct: 122 AERLVVEIYDKLLKMANEIYSQSSNTSASINANSVQHAQTPAAISNSIFSESVDALLALG 181 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A + + ++ IR AL+ Sbjct: 182 YKQKDAEKMIRGTI---GESTTAAEAIRKALQ 210 >gi|326791465|ref|YP_004309286.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM 5427] gi|326542229|gb|ADZ84088.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM 5427] Length = 197 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + E+ ++I+V GV Y ++C RTLS L + +++ H+++D L Sbjct: 1 MITYLVGTLEHIGENTLVIEVYGVGYEVFCSSRTLSELNGTREKVKIYIHEHIKEDGHDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF DR+ F L SV G+G + M V + ++ E++E I+ Q+SK ++++ GI K Sbjct: 61 YGFYHMEDRELFRKLISVSGIGPKGGMQVFNTYSSQEVIEIILNQDSKALSKVSGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK L + K++ S AI AL LGY +A A Sbjct: 121 AQRIILELKDSIGKLFVPDLSLLETGLKDE-------SAKAEAIEALEALGYAAQEARKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + A+ ++I+ AL + Sbjct: 174 VEAIYDYK---ANSEELIKKALSLL 195 >gi|325264009|ref|ZP_08130742.1| holliday junction DNA helicase RuvA [Clostridium sp. D5] gi|324031047|gb|EGB92329.1| holliday junction DNA helicase RuvA [Clostridium sp. D5] Length = 207 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + + V++DV GV Y IY P + + L + G + ++R+D ++L Sbjct: 8 MISYIRGELAAVETEKVIVDVGGVGYGIYMPGQAMGLLPQPGHEVKIHTYLNVREDAMQL 67 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS+++ +L +++ + K I+ PGI K Sbjct: 68 FGFLTRDDLEVFKLVIGVSGIGPKGGLNILSQLSPDDLRFAVMAGDVKAISAAPGIGKKT 127 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K LS + A + A+ ALV LGYG ++ A Sbjct: 128 AEKLIIELKDK---LSIEDVLTHAAEGSAAAVPVNNGGIQSEAVQALVALGYGSTESLRA 184 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V E + +++ AL+ + Sbjct: 185 VKQV---ELDNPTVEDVLKEALKKM 206 >gi|294501382|ref|YP_003565082.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551] gi|295706729|ref|YP_003599804.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319] gi|294351319|gb|ADE71648.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551] gi|294804388|gb|ADF41454.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319] Length = 203 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +YV+I+ G+ Y ++ P + + + T++ ++R+D I L Sbjct: 1 MFDYIKGTVTYINPEYVVIENNGIGYQVFTPNPYVFSIDE--QPKTVYTYQYVREDVIAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + FM L SV G+G + + +L+ ++V+++ ++ K + + PG+ K Sbjct: 59 YGFASREQKDLFMKLISVSGIGPKGGLAILASGNPAQVVQAVEEEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + + Q AI AL LGY + + Sbjct: 119 ARQMILDLKGKLHDIVPDAVPSLFADLDAQEVKSQSSEALDEAIEALKVLGYAEREIKKI 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++K+ Q I+ AL+ + Sbjct: 179 VPALMKE---TMTTDQYIKEALKRL 200 >gi|262375568|ref|ZP_06068801.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145] gi|262309822|gb|EEY90952.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145] Length = 200 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D L Sbjct: 1 MIGCLIGEVLALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ ++ F L V GVG ++A+G+LS ++ L+ ++ ++ + ++PG+ K Sbjct: 60 YGFINAQEKTIFRTLLKVNGVGPKMALGILSTLSVEMLIHTVEHEDINTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +++S S + Q S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKAMASGAAPSNSTAPQIQF---MGNSAVAEAEAALQSLGYKPVEAQKL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + + S IIR AL++++ Sbjct: 177 VNAA---KGEFTEASDIIRAALKSMN 199 >gi|266625272|ref|ZP_06118207.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM 13479] gi|288862827|gb|EFC95125.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM 13479] Length = 202 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + ++ED V+I+ + I+ P+ L L IG L+ +R+D + L Sbjct: 1 MISYVKGPLVDIFEDTVVIEAGYIGLEIHVPLSVLDRLPGIGMETVLYTYFQVREDGMCL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D Q F L SV G+G + A+GVLS +T EL +II ++K I++ PGI +K Sbjct: 61 YGFLNRQDLQMFRQLISVSGIGPKGALGVLSAMTPDELRLAIITGDAKAISRAPGIGVKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + Q E+ S A A+ ALV LGY +A A Sbjct: 121 AQRVILDLKDKIDMADVLPAQ----FAAEEEPGISAGGVAKEAVEALVALGYSTAEANRA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V + +++ +L+ ++ Sbjct: 177 VGKV--EVTGDMTSEDVLKASLKHLA 200 >gi|303230216|ref|ZP_07316984.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-134-V-Col7a] gi|302515142|gb|EFL57116.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-134-V-Col7a] Length = 202 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ + + + + Q + + AI ALV+LGY Q Sbjct: 120 AERLVLELKDKLVKMTQISVETPAAI---QPIGVTHSGPSGEAIEALVSLGYAQKDVEAL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ D S +I+ L + Sbjct: 177 VESL---NDGSKDVSALIKACLVEL 198 >gi|297621995|ref|YP_003710132.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia chondrophila WSU 86-1044] gi|297377296|gb|ADI39126.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia chondrophila WSU 86-1044] Length = 202 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + +++ G+ Y ++ P T L +IG L +R+ L Sbjct: 1 MIYFIRGILIQSTPGIAILETGGIGYKVHIPASTYPKLPQIGQEALLHTSMVVREVSQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L +V G+G ++A+ ++ ++ E+ +I Q +I+++PGI K Sbjct: 61 YGFFYSEERDLFEELTTVSGIGPKIALALIGHLSVEEMHAAIGNQEVAMISKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + Q S +A+SAL+NLGY Q A A Sbjct: 121 AQRLVIELRDKVQKGGKY---SLPSDFAIQVGTDSRGQKIADAMSALLNLGYNQSTAQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + L D +++I AL+ Sbjct: 178 LKKSLSNFPETIDLTELITDALK 200 >gi|294669790|ref|ZP_06734856.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308356|gb|EFE49599.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 194 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L + + L+ + +R+D L Sbjct: 1 MISRLTGKLIEKQPPQIVIDVNGVAYEADVSMQTFYNLPPLNETVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFGTAAERATFRQLVKVSGIGAKTALGILSAMTADELAQAVAQEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK V+ + I L+ LGY +A A Sbjct: 121 AERMILELRGKLSG---------GTVSDGLFAQPQAADETDDIIGTLLALGYSDREARAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + + +RLAL+ + Sbjct: 172 VKGIA----PGTEVGEGVRLALKNL 192 >gi|113866527|ref|YP_725016.1| Holliday junction DNA helicase RuvA [Ralstonia eutropha H16] gi|123033276|sp|Q0KEC3|RUVA_RALEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113525303|emb|CAJ91648.1| holliday junction resolvasome, DNA-binding subunit RuvA [Ralstonia eutropha H16] Length = 193 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L +G TL + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEVDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL ++I LQ + + +IPGI K Sbjct: 61 YGFGTASERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + ++P A++ ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGAELGHVPGTPAVPDSAVDVLNALLALGYSEKEAAAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191 >gi|323138242|ref|ZP_08073314.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242] gi|322396494|gb|EFX99023.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242] Length = 205 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 136/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y+++C RTL L + G+ L +ET +R+D IRL Sbjct: 1 MIGKLKGLIDSYGEDFVILDVNGVGYVVHCSSRTLQKLPRAGEAAALAIETQVREDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++++R WF LLQ+VQGVGA+VA+G+LS ++++E+ +I Q+ ++A+ PG+ K+ Sbjct: 61 FGFEAEVERDWFRLLQTVQGVGAKVALGILSILSSSEIASAIATQDKAMVARAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + +V ++ S PS +AISALVNLGYG+ QA A Sbjct: 121 AARIVAELKDKAPAFGAVDPVVAKLAGEDAD--ASAPSAVRDAISALVNLGYGRPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K A+ +IR LR ++ Sbjct: 179 VAASVKALGEGAETGALIRQGLRELA 204 >gi|239827859|ref|YP_002950483.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70] gi|259495646|sp|C5D5E9|RUVA_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239808152|gb|ACS25217.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70] Length = 201 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ + +Y++ID G+ Y I+ P S T++ ++R+D + L Sbjct: 1 MIEFVRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDTLAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ +LVE+I +N + + PG+ K Sbjct: 60 YGFRTREERTLFAKLLQVSGIGPKGGLAILAAGQPEQLVEAIEQENETFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++++ D+ + +E A S AI AL LGY + + Sbjct: 120 ARQMILDLKGKLTAVTAKTFPDLFHLQEESAR--PHLSALEEAIEALKALGYAEREIQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S++K+ Q ++ AL+ + Sbjct: 178 VPSLMKEN---LSTDQYVKRALQQL 199 >gi|291458999|ref|ZP_06598389.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon 078 str. F0262] gi|291418253|gb|EFE91972.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon 078 str. F0262] Length = 203 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L E VL++ G+ Y I P L L G+ + +R+D + L Sbjct: 1 MIRYVRGILRELREGMVLVEAGGLGYGIRVPASLLPALPPPGEEVKIHTYFSVREDAMEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ DR F+ L V G+G + A+G+LS + EL +I + + I PGI K Sbjct: 61 FGFLTAEDRDIFVRLLGVSGIGPKGALGILSVLRPEELRRAIFSGDIRSIQAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S + ++ A A+ AL++LGYG +A A Sbjct: 121 AERLILDLKDKIDPPDFLPA--FSDGEIPEGGEEALRDSAKEALEALLSLGYGMAEAQRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V E DD +++ +LR ++ Sbjct: 179 VRRVKLTEDMTPDD--VLKQSLRHLA 202 >gi|188591242|ref|YP_001795842.1| holliday junction DNA helicase ruva [Cupriavidus taiwanensis LMG 19424] gi|229560026|sp|B2AH73|RUVA_CUPTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170938136|emb|CAP63122.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Cupriavidus taiwanensis LMG 19424] Length = 193 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L +G TL + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + G+GAR+A+ VLS ++ EL ++I LQ + + +IPGI K Sbjct: 61 YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + ++P A++ ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGAELGHAPGTPAVPDSAVDVLNALLALGYSEKEAAAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|296132699|ref|YP_003639946.1| Holliday junction DNA helicase RuvA [Thermincola sp. JR] gi|296031277|gb|ADG82045.1| Holliday junction DNA helicase RuvA [Thermincola potens JR] Length = 200 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + EDY++IDV GV Y +Y P + L G T+F ++R+D ++L Sbjct: 2 MISFLRGELNYIGEDYIIIDVHGVGYKVYVPASFIGKLPACGQPVTVFTHLYVREDVMQL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L V G+G +VA+ VLS + A+ ++I+ + V+ Q+PGI K Sbjct: 62 YGFPDREELELFEVLLQVSGIGPKVAVSVLSAVPASSFKQAIVNEQVGVLTQVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L Q N A+ AL+ LGY ++A A Sbjct: 122 AQRMILELKDKLGKLPGRGQAPPVSAN--------FAPNTEEAVQALIALGYAPNEARKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+ + + I+ AL ++ Sbjct: 174 VNKVVNTHPELG-VEESIKKALLELA 198 >gi|154504992|ref|ZP_02041730.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149] gi|153794875|gb|EDN77295.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149] Length = 375 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + GL D ++DVQGV Y IY P ++LS LG IG + ++R+D ++L Sbjct: 176 MISYIRGELAGLERDKAIVDVQGVGYGIYMPEQSLSLLGPIGCEVKIHTYLNVREDAMQL 235 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS ++A EL +++ ++K I PGI K Sbjct: 236 FGFLTRDDLEVFRLVIGVSGIGPKGGLNILSCLSADELKFAVLSGDAKAICAAPGIGKKT 295 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + S E A+ ALV LGYG ++ A Sbjct: 296 AEKLIIELKDKLDLKEML--EPRSAAAAEIPSDGRNGDIQTEAVQALVALGYGNAESLKA 353 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V +++ AL+ + Sbjct: 354 VRQV----TEYTSVEDVLKEALKKM 374 >gi|144898113|emb|CAM74977.1| Holliday junction ATP-dependent DNA helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 84/205 (40%), Positives = 124/205 (60%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG I+ L +D+ ++DV GV Y+++C RTL L ++G L VETH+R+D I L Sbjct: 1 MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +R WF LL +VQGVGA+VA+ +LS T +L+++I Q+ ++ + G+ K+ Sbjct: 60 YGFLEPGERDWFNLLITVQGVGAKVALAILSVATPEQLLQTIAAQDKVMLTRASGVGPKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA +S + + +AISALVNLGY + +A A Sbjct: 120 ALRILTELKDKAGKMSLGGFASSAGTAAISTPV-GDGGLMEDAISALVNLGYKRLEAFEA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V K+ AD S +IR AL+ + Sbjct: 179 VGIVAKELGEGADSSTLIRHALKRL 203 >gi|299135919|ref|ZP_07029103.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8] gi|298602043|gb|EFI58197.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8] Length = 198 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 8/201 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + V++D GV Y + I T + LG G L V TH+R+D + L Sbjct: 1 MIAYLRGRILSKASNAVIVDCNGVGYELAISITTFTELGAEGAEAKLHVHTHVREDALAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L ++ G+G ++A+ VLS I+A LV +I + + +IPGI K Sbjct: 61 FGFAELTEKRLFEKLLTISGIGPKLAITVLSGISAERLVGAIRAGDHATLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K DM E S+ + A + +SALVNLGY + A A Sbjct: 121 AERVVLELKDKL--------DDMVGSTPETGARFSLGTVADDVLSALVNLGYARPVAQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 V + K D Q+ R A Sbjct: 173 VETAAKDAAVAGDFEQLFRAA 193 >gi|319404769|emb|CBI78370.1| holliday junction DNA helicase RuvA [Bartonella rochalimae ATCC BAA-1498] Length = 215 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 130/208 (62%), Gaps = 1/208 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E ++ D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + I++ PG+ K+ Sbjct: 61 FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRTPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK K + S ++++ + +A+ AL+ LG+ ++A TA Sbjct: 121 SERIVSELKNKTLQFSKEDNKNLAFSSSLTFSSEEEYQPTNDALLALIKLGFDHEKAATA 180 Query: 181 VVSVLKKEK-NIADDSQIIRLALRAISC 207 + S + K + ++R +L+ +S Sbjct: 181 LASAVSALKGETISSALLVRHSLKLLSS 208 >gi|269797654|ref|YP_003311554.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008] gi|269094283|gb|ACZ24274.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008] Length = 202 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 112/205 (54%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T +II + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + Q + A AI ALV+LGY + Sbjct: 120 AERLVLELKDKIAKMTHISAESPAAI---QPIGVTASGAAGEAIEALVSLGYSERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ + D S++I+++L + Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198 >gi|149370922|ref|ZP_01890517.1| Holliday junction DNA helicase [unidentified eubacterium SCB49] gi|149355708|gb|EDM44266.1| Holliday junction DNA helicase [unidentified eubacterium SCB49] Length = 193 Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + V+++ GV Y I + T S L + L+ +R+D L Sbjct: 1 MVHHVQGKMIEKNPTDVVVECNGVGYFINISLHTFSQLPST-ENVLLYTHLQVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R+ F LL SV GVGA +A +LS + +++++I+ ++ VI + GI K Sbjct: 60 YGFSTKVEREIFRLLISVSGVGASIARTMLSSLNPKQVMDAIVSEDVSVIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K I + + S + A+SAL LG+ + A Sbjct: 120 AQRVILDLKDKIIKVFGM----------SAISAVSSNTNKNEALSALETLGFARKVAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++++ A +II+ AL+ + Sbjct: 170 CDKIVQQHPE-ATVEEIIKHALKNL 193 >gi|331091226|ref|ZP_08340067.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404673|gb|EGG84212.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 2_1_46FAA] Length = 201 Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + E+ +IDV GV Y I+ P +++ L + + L H+++D ++L Sbjct: 1 MISYIRGELVAVEEEKAVIDVGGVGYGIFMPAQSMGKLPPLHEEVRLHTYLHVKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F L+ V G+G + A+ +LS ++A +L +++ + K I+ GI K Sbjct: 61 YGFLTRDDLKVFKLVIGVSGIGPKGALNILSNLSADDLRFAVLSNDVKAISAAQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + +E A A+ ALV LGYG ++ A Sbjct: 121 AEKLIIELKDKLSMDDVLEHM---VQEEEVAVTGQNSGVQAEAVQALVALGYGNTESLRA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + +D +++ ALR + Sbjct: 178 VRRV--EVNADSDVETVLKQALRFM 200 >gi|49476147|ref|YP_034188.1| Holliday junction DNA helicase motor protein [Bartonella henselae str. Houston-1] gi|81648457|sp|Q6G5R0|RUVA_BARHE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49238955|emb|CAF28253.1| Holliday junction DNA helicase ruvA [Bartonella henselae str. Houston-1] Length = 205 Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 131/207 (63%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D+++++VQGV Y+++ R L +G+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFDDHIIVNVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFIAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK KA+ S V H+ +A+SAL+ LG+ +DQA A Sbjct: 121 SERIVSELKSKALPFSEKVIHSAPL-----PHLEVTNQPTNDALSALIKLGFERDQAARA 175 Query: 181 VV-SVLKKEKNIADDSQIIRLALRAIS 206 + +V E + +IR +L+ +S Sbjct: 176 LALAVNALEGETVSSALLIRHSLKLLS 202 >gi|312113736|ref|YP_004011332.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC 17100] gi|311218865|gb|ADP70233.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC 17100] Length = 209 Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 85/209 (40%), Positives = 128/209 (61%), Gaps = 4/209 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + D+ +IDV GV Y + C RTL L K G+ L +ET++R+D I+L Sbjct: 1 MIGKLKGIVDAVGADHAIIDVGGVGYEVACSPRTLGAL-KPGEPVALSIETYVREDAIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R WF LLQSVQGVGA+VA+ +L+ + + +L ++I +Q+ + + PG+ K+ Sbjct: 60 YGFLSEAERGWFRLLQSVQGVGAKVALSILATLDSAQLAQAIAMQDRVSVTRAPGVGPKV 119 Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ ELK KA L+ + + S + PS A A+SALVNLGY QA Sbjct: 120 ALRIVNELKDKAPPLAFSVAAIAAPASGSASAAIPASAAPSPAAEAVSALVNLGYAPLQA 179 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + L K A +IRL L+ ++ Sbjct: 180 NAAISTALGKAGEDARTEDLIRLGLKDLA 208 >gi|255020124|ref|ZP_05292194.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC 51756] gi|254970417|gb|EET27909.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC 51756] Length = 191 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G+I + ++ ++V G+ Y + P+ L G TL +R+D L Sbjct: 1 MIAFLRGHILERHPPWLWLEVNGIGYELEMPLSAFFQLPADGAALTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V G+G +VA+ LS + +L ++ + + + IPG+ + Sbjct: 61 YGFRERAERDIFRQLIKVSGIGGKVALACLSGMDVEQLRAALRDGDVRRLTAIPGVGART 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + AI+AL +LGY A+ A Sbjct: 121 AERLIVELRDKL-------------ASGSVGATPVAGDPRQEAIAALQSLGYKATDASQA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 L ++IR L+ ++ Sbjct: 168 ----LAGLDPGLSVEELIRQGLKTLA 189 >gi|149927724|ref|ZP_01915976.1| Holliday junction DNA helicase motor protein [Limnobacter sp. MED105] gi|149823550|gb|EDM82780.1| Holliday junction DNA helicase motor protein [Limnobacter sp. MED105] Length = 196 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + ++L+DVQGV Y + P+ TL L +I CTL +R+D L Sbjct: 1 MIGRLKGTLLEKNAPWILLDVQGVGYELQVPMSTLFNLPEINGSCTLLTHLVVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L V G+G R A+ +LS I+ + + ++ Q + + +IPGI K Sbjct: 61 YGFQNIAEKNLFKTLIKVSGIGPRTALAILSSISTNDFLLAVQSQETARLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKG+ ++L + + AL LGY +A A Sbjct: 121 AERLLLELKGQIVALGG--------TANIAEGMPLPIGNQSEIVQALCALGYSDKEAALA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 K + ++LALR +S Sbjct: 173 ----CKGLPEGTSVTDGLKLALRNLS 194 >gi|322420882|ref|YP_004200105.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18] gi|320127269|gb|ADW14829.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18] Length = 199 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D+V++DV GV Y ++ P T L G TL + T +++D I L Sbjct: 1 MIALLTGKIAYKAPDHVILDVNGVGYHVFIPFSTYYALPAEGGTATLQIHTSVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL V GVG ++A +LS EL ES++ + ++ IPGI K Sbjct: 61 YGFRTQQEKELFQLLIGVSGVGPKLANSILSNSEPAELAESLVSGDLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L ++ A + +SAL+NLGY + A Sbjct: 121 AERLVLELKEKIRKLG------IAQPATSAAAAPVRQETREDVLSALINLGYKESVVQKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K A +++ AL+ + Sbjct: 175 LGEL--KFPEDATVEALLKQALKVL 197 >gi|121535579|ref|ZP_01667386.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans Nor1] gi|121305819|gb|EAX46754.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans Nor1] Length = 201 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L D+ ++DV GV Y ++ P L G LF H+R+D + L Sbjct: 1 MIGYLRGTVVHLGVDHCILDVNGVGYRVFVPASGRQRLVA-GAQAALFTYLHVREDALLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F+LL V G+G + A+ +LS ++ ++ +N ++ +IPGI K Sbjct: 60 YGFHTQDEYELFLLLMDVSGIGPKAALNILSAVSPEGFRLAVSQKNVSLLTKIPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + S A A+ A++ LGY + Sbjct: 120 AERIILELKDKV----GTSGETGGDAGLAATGSASAIDQADEALQAMLALGYSHAEVAPV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V + ++ ++IRL LR Sbjct: 176 LKKVRHEAQS---VEELIRLVLRE 196 >gi|238916873|ref|YP_002930390.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC 27750] gi|259495642|sp|C4Z030|RUVA_EUBE2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|238872233|gb|ACR71943.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC 27750] Length = 207 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + D ++++ G+ Y IY P L +G ++ ++++D+ L Sbjct: 1 MISYIKGELAEILPDVIVVEANGIGYNIYVPGSVPGELPSVGSEVKIYTYMNVKEDECSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F +L V G+G + A+G LS ITA +L +++ + I +PGI K Sbjct: 61 FGFLTRDDLSMFKMLICVNGIGPKAALGALSNITADDLRFAVLADDVAAIKALPGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ ELK K L V + +S +++ ++ +A+ ALV+LGY A Sbjct: 121 AQKIIIELKDKL-KLDEVFESALSKNKKADNNSNVSNVMMIRNDAVEALVSLGYSSKDAL 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV V ++ D +++ AL+ + Sbjct: 180 VAVKEV--EDIENKDSETVLKEALKKL 204 >gi|296535992|ref|ZP_06898136.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas cervicalis ATCC 49957] gi|296263678|gb|EFH10159.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas cervicalis ATCC 49957] Length = 207 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ ++ + DV GV Y++ C RTL+ L +L +ET +R+D I L Sbjct: 1 MIGKLTGKLDSQFDGGCIFDVNGVGYLVACSARTLAALPAPPGIGSLLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R W+ L +QGVG +VA+G+LS ++ +L ++I + I + PG+ K+ Sbjct: 61 YGFADATERDWYRTLTGIQGVGPKVALGLLSTLSPADLARALIAGDKGAINRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ EL+ K +L + V A + +AISAL NLG+ + +A A Sbjct: 121 AARLVAELRDKVGALPTGPGLSAGTVT-IAAQLPPADRAQADAISALTNLGWKRPEAAGA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V +K A +IR AL+ ++ Sbjct: 180 VQRVAEKLGEGAGLESLIREALKELA 205 >gi|148263482|ref|YP_001230188.1| Holliday junction DNA helicase RuvA [Geobacter uraniireducens Rf4] gi|146396982|gb|ABQ25615.1| Holliday junction DNA helicase subunit RuvA [Geobacter uraniireducens Rf4] Length = 199 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D++++D+ GV Y + P T L G TL + TH+++D I L Sbjct: 1 MIALLAGKLAHKSPDFIILDIGGVGYRVQIPFSTYYALPDAGGVVTLNIYTHVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL SV GVG ++ G+LS I A L +++I + ++ IPGI K Sbjct: 61 YGFRTMAEKEMFQLLISVSGVGPKLGNGILSNIEAENLSDALIRGDLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + ++ + ISALVNLGY + A Sbjct: 121 AERLVLELREKVKKMGPF------SIREDAPPSPGRQDIRDDVISALVNLGYKEAVVQKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ A I++ AL+ + Sbjct: 175 LEAI--DIPADASVESILKQALKKL 197 >gi|53720506|ref|YP_109492.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei K96243] gi|53726199|ref|YP_103912.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 23344] gi|67642316|ref|ZP_00441074.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse 4] gi|76809765|ref|YP_334777.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710b] gi|121600711|ref|YP_991618.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1] gi|124384917|ref|YP_001027114.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10229] gi|126438536|ref|YP_001060376.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668] gi|126450738|ref|YP_001082059.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10247] gi|126453529|ref|YP_001067637.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 1106a] gi|134280414|ref|ZP_01767125.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305] gi|167000504|ref|ZP_02266316.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20] gi|167721174|ref|ZP_02404410.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei DM98] gi|167740150|ref|ZP_02412924.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 14] gi|167817363|ref|ZP_02449043.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 91] gi|167825771|ref|ZP_02457242.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 9] gi|167895840|ref|ZP_02483242.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 7894] gi|167904231|ref|ZP_02491436.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei NCTC 13177] gi|167912490|ref|ZP_02499581.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 112] gi|167920442|ref|ZP_02507533.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei BCC215] gi|217421175|ref|ZP_03452680.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576] gi|226198378|ref|ZP_03793947.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pakistan 9] gi|237813764|ref|YP_002898215.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei MSHR346] gi|242317479|ref|ZP_04816495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1106b] gi|254178754|ref|ZP_04885408.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 10399] gi|254180688|ref|ZP_04887286.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1655] gi|254191517|ref|ZP_04898020.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pasteur 52237] gi|254194815|ref|ZP_04901245.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13] gi|254202624|ref|ZP_04908987.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH] gi|254207963|ref|ZP_04914313.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU] gi|254260441|ref|ZP_04951495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710a] gi|254299226|ref|ZP_04966676.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 406e] gi|254355897|ref|ZP_04972175.1| Holliday junction DNA helicase RuvA [Burkholderia mallei 2002721280] gi|81379105|sp|Q63QX6|RUVA_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81604343|sp|Q62HA8|RUVA_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90134634|sp|Q3JNS6|RUVA_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230525|sp|A3MP73|RUVA_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230526|sp|A2S595|RUVA_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230527|sp|A1V065|RUVA_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230528|sp|A3NZ66|RUVA_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230529|sp|A3NDF5|RUVA_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52210920|emb|CAH36908.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243] gi|52429622|gb|AAU50215.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 23344] gi|76579218|gb|ABA48693.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710b] gi|121229521|gb|ABM52039.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1] gi|124292937|gb|ABN02206.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10229] gi|126218029|gb|ABN81535.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668] gi|126227171|gb|ABN90711.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1106a] gi|126243608|gb|ABO06701.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10247] gi|134248421|gb|EBA48504.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305] gi|147746871|gb|EDK53948.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH] gi|147751857|gb|EDK58924.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU] gi|148024872|gb|EDK83050.1| Holliday junction DNA helicase RuvA [Burkholderia mallei 2002721280] gi|157808883|gb|EDO86053.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 406e] gi|157939188|gb|EDO94858.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pasteur 52237] gi|160694668|gb|EDP84676.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 10399] gi|169651564|gb|EDS84257.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13] gi|184211227|gb|EDU08270.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1655] gi|217396587|gb|EEC36604.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576] gi|225929561|gb|EEH25579.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pakistan 9] gi|237505707|gb|ACQ98025.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei MSHR346] gi|238523444|gb|EEP86882.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse 4] gi|242140718|gb|EES27120.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1106b] gi|243063559|gb|EES45745.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20] gi|254219130|gb|EET08514.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710a] Length = 193 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPPERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++ALV LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGPLAGAASPSDHATDILNALVALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|332184195|gb|AEE26449.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida 3523] Length = 216 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQISLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---------VNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQSSGTKVANLDSQAPQVPTPTVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|223938504|ref|ZP_03630396.1| Holliday junction DNA helicase RuvA [bacterium Ellin514] gi|223892766|gb|EEF59235.1| Holliday junction DNA helicase RuvA [bacterium Ellin514] Length = 201 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V +DV GV Y + P+ + L + G L +R+D L Sbjct: 1 MINFLHGKLVEALPTQVTVDVNGVGYEVLIPLSSFDKLPQPGGEVKLLTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF++ +R+ F LL +V G+G ++A+ +LS + T L ++ + K ++QI G+ K Sbjct: 61 YGFMTAGEREMFRLLMNTVTGIGPKLALNILSGMNVTMLRGAVSNGDVKSLSQISGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K + + Q + +A+ AL+ LG+ Q +A Sbjct: 121 TAERIVVELKDKMGAAGAW------EAASAQRSLSEPDQRVNDAVLALMALGFKQPEAHD 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V S A ++R +L+ Sbjct: 175 TVRSAQVLLGQQATVEDLVRASLKK 199 >gi|198282210|ref|YP_002218531.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665092|ref|YP_002424575.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 23270] gi|226698723|sp|B5EJL8|RUVA_ACIF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725431|sp|B7J3G2|RUVA_ACIF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|198246731|gb|ACH82324.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517305|gb|ACK77891.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 193 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I ++ +DVQGV Y + P+ + G T+ +R+D L Sbjct: 1 MITSLTGTILQRRPPWLWLDVQGVGYELEMPLSGFYQMPAEGAALTVHTHLTIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL V G+G +VA+ LS + A L +++ N+ + IPGI K Sbjct: 61 YGFMTVAERDMFRLLIRVNGIGGKVALACLSGLPAERLSQAVAEGNTAQLTAIPGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ + Q AI+AL+ LGY QA+ A Sbjct: 121 AERLVVELRDKMGGIAPGPMGRGGAGDPRQ-----------EAIAALLTLGYKPAQASQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + +IR +L+ +S Sbjct: 170 IAGLA----DGLGLEDLIRQSLQNLS 191 >gi|258593140|emb|CBE69451.1| Holliday junction DNA helicase ruvA [NC10 bacterium 'Dutch sediment'] Length = 208 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++IDV GV Y ++ P+ T L +I L + TH+R+D I+L Sbjct: 1 MIAQLRGLLASKDPGQIVIDVNGVGYQVFVPLSTFYQLPEIQQEVHLRIYTHVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F LL V G+G R+A +LS I E + +++ ++ + IPG+ K Sbjct: 61 YGFHAIEERITFELLTGVSGIGPRLAANILSGIAVEEFIPAVLEGDTARLKAIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V ++ + +SAL+NLG + +A+ A Sbjct: 121 AERIILELKDKVTEVPC-----RGRVVVDRQPSPERDRTIEDVVSALLNLGCSRKEASAA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + D +++ AL+ +S Sbjct: 176 AEAAHHTVGDGTDFETLVKQALKHLS 201 >gi|88705605|ref|ZP_01103315.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71] gi|88700118|gb|EAQ97227.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71] Length = 195 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 6/195 (3%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 +L+DV GV Y + P+ TL L +G+ TL +R+D L+GF+S DR Sbjct: 2 LQKQPPEILVDVGGVGYELQVPMTTLFQLPALGEVVTLLTHHAVREDAQTLYGFVSARDR 61 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 + F L V GVG ++A+ +LS + ++ + + +PG+ K A R++ E++ Sbjct: 62 ELFRHLIKVNGVGPKLALTILSGMDGERFARAVHDDDLSALVALPGVGKKTAERLLIEMR 121 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 + + + + +A ALV LGY +A V V Sbjct: 122 DRVSGWLEPGPGESANLG----QAGPSSDKLGDAEGALVALGYKPAEAARLVARV--DND 175 Query: 190 NIADDSQIIRLALRA 204 +I+D ++IRLALR+ Sbjct: 176 DISDSEELIRLALRS 190 >gi|21243875|ref|NP_643457.1| Holliday junction DNA helicase RuvA [Xanthomonas axonopodis pv. citri str. 306] gi|294626863|ref|ZP_06705455.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665404|ref|ZP_06730692.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|24212375|sp|Q8PHV0|RUVA_XANAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|21109477|gb|AAM37993.1| holliday junction binding protein DNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|292598877|gb|EFF43022.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604815|gb|EFF48178.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 194 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSSGAPITGQL----------GPDAVSEATVALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A +IR AL+A Sbjct: 171 ARDAGAEGDEVA---TVIRKALQA 191 >gi|256819155|ref|YP_003140434.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM 7271] gi|256580738|gb|ACU91873.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM 7271] Length = 194 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +V+ID GV Y + + T S L + G+ L+ +++D L Sbjct: 1 MITQLQGKLVEKNSTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA ++ +II + I + GI K Sbjct: 60 YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGDVATIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L E+ + ++ + A++AL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDF----------EEVPMNAVSTHKEEALAALEVLGFMRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++K +II+ AL+ + Sbjct: 170 VDIIIKSSSEELSVEEIIKQALKRL 194 >gi|56707779|ref|YP_169675.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis SCHU S4] gi|110670250|ref|YP_666807.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis FSC198] gi|56604271|emb|CAG45291.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320583|emb|CAL08674.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. tularensis FSC198] Length = 217 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 2 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 62 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 122 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 181 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 182 YKQKDAEKMARSAM---GDATTVAEVIRKALQ 210 >gi|224456850|ref|ZP_03665323.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis MA00-2987] gi|254370278|ref|ZP_04986283.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|254874591|ref|ZP_05247301.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|90135024|sp|Q5NH17|RUVA_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151568521|gb|EDN34175.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|254840590|gb|EET19026.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158951|gb|ADA78342.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. tularensis NE061598] Length = 216 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTVAEVIRKALQ 209 >gi|332519991|ref|ZP_08396455.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4] gi|332044550|gb|EGI80744.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4] Length = 193 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + V+ID GV Y++ + T S + + LF +++D L Sbjct: 1 MITHIKGKMVEKNPTDVVIDCNGVGYLLNISLNTFSQIPD-QESIHLFTHLQVKEDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F LL SV G+G A +LS +T ++ E I + +I I GI K Sbjct: 60 YGFFTKGEREVFRLLISVSGIGTNTARTMLSSLTPKQIREGIATADVALIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + ++ + + A+SAL LG+ + QA Sbjct: 120 AQRVILDLKDKILKIYDI----------DEVSVNRNNTNKDEALSALEVLGFAKKQAERV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + A II+LAL+ + Sbjct: 170 VDKIVVAQPE-ASVEAIIKLALKNL 193 >gi|315224590|ref|ZP_07866416.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga ochracea F0287] gi|314945456|gb|EFS97479.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga ochracea F0287] Length = 194 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + YV+ID GV Y + + T S L + G+ L+ +++D L Sbjct: 1 MITQLQGKLVEKNPTYVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA ++ +II I + GI K Sbjct: 60 YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGEVATIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L E+ + ++ + A++AL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDF----------EEVPMNAVSTHKEEALAALEVLGFMRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++K +II+ AL+ + Sbjct: 170 VDIIIKSSSEELSVEEIIKQALKRL 194 >gi|290967870|ref|ZP_06559420.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1 str. 28L] gi|290782009|gb|EFD94587.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1 str. 28L] Length = 200 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + ++ +Y IDV GV Y IY P TL+ L TLF H+R+D I L Sbjct: 1 MIGYIRGPVTRIFHEYCFIDVHGVGYRIYAPAATLAALVPE-RETTLFTYMHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + FMLL V GVG +VA+G+LS +T E ++ ++ K + ++PGI K+ Sbjct: 60 YGFGTQEEYDVFMLLIGVSGVGPKVALGILSAVTPEEFCAAVQRKDLKTLTRMPGIGKKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RI+ EL K SL + + S A+ AL LGY + +A TA Sbjct: 120 GDRILFELHDKVASLQGRIPD-----GADNGEDIDSGSHTDEAVEALRGLGYSESEAQTA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V SV K+ ++ D IR AL+ + Sbjct: 175 VASVTGKDLSVEDK---IRRALQVL 196 >gi|146299412|ref|YP_001194003.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae UW101] gi|57236796|gb|AAW49008.1| RuvA [Flavobacterium johnsoniae UW101] gi|146153830|gb|ABQ04684.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae UW101] Length = 193 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + V+ID GV Y + + T S + DF L+ +++D L Sbjct: 1 MIAHLQGKLVEKNPTEVVIDCGGVGYHVNISLHTFSLIPNA-DFIKLYTHLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F +L SV G+GA +A +LS I +++ +I + VI I GI K Sbjct: 60 YGFVEKSEREIFRMLLSVSGIGAGIARTMLSSIEPRQIINAIASGDVGVIQSIKGIGNKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L + ++ + + A+SAL LG+ + + Sbjct: 120 AQRVILDLKEKVLKLYDL----------DEVSVVQNNTNRDEALSALEVLGFVRKTSEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++K++ A II+ AL+++ Sbjct: 170 VEKIVKEDPE-ATVETIIKKALKSL 193 >gi|167837835|ref|ZP_02464718.1| Holliday junction DNA helicase motor protein [Burkholderia thailandensis MSMB43] Length = 193 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPHTGEKVMLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGPLAGAASPSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|300112852|ref|YP_003759427.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113] gi|299538789|gb|ADJ27106.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113] Length = 202 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L+DVQGV Y + P+ T L +G L+ +R D L Sbjct: 1 MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F S+ +R F L V GVGA++ +G+LS I A + ++ + ++PGI K Sbjct: 61 YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + ++ + + A+SALV LGY + A+ Sbjct: 121 AERLIIEMRDRLL---DRPESRIAEMCSDTVDGSVPAGTVAEAVSALVALGYKPNDASRT 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + +IIR +L+ + Sbjct: 178 VRRL---DTEGLTTEEIIRRSLQRM 199 >gi|332968271|gb|EGK07345.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella kingae ATCC 23330] Length = 188 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 12/197 (6%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + ++IDV GV Y + ++T L +G+ L+ +R+D LFGF + Sbjct: 2 LLEKMPPQIVIDVNGVGYELDVSMQTFYALPALGETVQLYTYLVVREDAHLLFGFGDASE 61 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L V G+GA+ A+G+LS +T EL ++I ++ K ++ PGI K A R++ EL Sbjct: 62 RTTFRQLIKVSGIGAKTALGILSAMTTDELAQAIANEDVKRLSSAPGIGKKTAERMILEL 121 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188 +GK + + + +S L+ LGY + +A A K Sbjct: 122 RGKL--------AHRGLGDLALFTPAADTDNRADVVSTLLALGYSEREAQAA----CKSL 169 Query: 189 KNIADDSQIIRLALRAI 205 N + + +RLAL+ + Sbjct: 170 PNGVEVGEGVRLALKQL 186 >gi|119896893|ref|YP_932106.1| Holliday junction DNA helicase RuvA [Azoarcus sp. BH72] gi|166230515|sp|A1K314|RUVA_AZOSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119669306|emb|CAL93219.1| holliday junction DNA helicase [Azoarcus sp. BH72] Length = 199 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y + P+ T L G +L +R+D L Sbjct: 1 MIGRISGLLLEKNPPQILVDAHGVGYELEVPMSTFYGLPATGTQVSLHTHLAIREDGHFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R F L V G+GAR A+ VLS ++ ++L +++ LQ + + +IPGI K Sbjct: 61 YGFATDEERTAFRQLLKVSGIGARTALAVLSGLSVSDLAQAVALQEAGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V + A P + ++AL+ LGY + +A A Sbjct: 121 AERLLLELRDKLGKALPQV-----AGARLAAVAGGAPDAKSDILNALLALGYNEKEALGA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +K S IR AL+ +S Sbjct: 176 ----MKGLAEDTGVSDGIRQALKLLS 197 >gi|110636455|ref|YP_676662.1| Holliday junction DNA helicase [Cytophaga hutchinsonii ATCC 33406] gi|123354887|sp|Q11Z44|RUVA_CYTH3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110279136|gb|ABG57322.1| Holliday junction DNA helicase subunit RuvA [Cytophaga hutchinsonii ATCC 33406] Length = 199 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + +V++DVQG+ Y I + T S L + + + H+++D L Sbjct: 1 MIAYIEGKLAHKDPTFVVVDVQGIGYHIRVSLHTFSQLKDL-ERVKIHTFLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++++ F+ L S+ G+G A+ VLS + EL E+I ++ K I + GI +K Sbjct: 60 FGFADLMEKEMFLHLTSISGIGPGTALVVLSSMNPIELKEAIAREDVKTIQSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D +Q S S A++AL+ LG+ + A Sbjct: 120 AQRVILELKDKMKKDALLAGSD-----SKQNFSVSHNSIRSEALTALITLGFTKTVAEKN 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + +LK N +I+ AL+ Sbjct: 175 LDLILKGNSNSFTLEDLIKQALK 197 >gi|225011142|ref|ZP_03701604.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-3C] gi|225004704|gb|EEG42664.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-3C] Length = 193 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++++ GV Y+++ + T S L + +++ +++D L Sbjct: 1 MITHLRGKLVEKNPTEIVVECGGVGYLVHISLHTYSLLPSE-EAVSIYTHLQVKEDSHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F LL SV G+GA A +LS ++ EL ++I N I + GI +K Sbjct: 60 YGFMEVSERAIFRLLISVSGIGANTARTMLSSLSPEELRDAIAASNVGTIQSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + E+ + A+SAL LG+ + Q+ Sbjct: 120 AQRVIIELKDKILKIYDL----------EELSTPLDNTNKEEALSALEVLGFARKQSEKM 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK ++ II+ L+ + Sbjct: 170 VEKILKASPSL-SVEDIIKQTLKGL 193 >gi|269468816|gb|EEZ80420.1| Holliday junction resolvasome, DNA-binding subunit [uncultured SUP05 cluster bacterium] Length = 195 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L++V G+ Y I CP+ + +G + +L H+++D L Sbjct: 1 MIGQLTGKILEKNPPEILLEVGGIGYEILCPMSSFYEMGS-NENISLHTHFHVKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S ++ F L V G+G +VA+ +LS + L+ ++ ++ ++A+ PGI K Sbjct: 60 YGFISKDEKILFRELIRVNGIGPKVALAILSHLNVASLMNAVANEDDALLAKTPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + L ++S + + I A AL LG+ +A Sbjct: 120 AQKLIVELKDRLEKL------ELSSSAHQIITASNSNPNTIKASQALQALGFKTKEADRM 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + ++ + ++IR AL+ Sbjct: 174 LNAI---NDDSLSIEELIRKALQ 193 >gi|241668355|ref|ZP_04755933.1| Holliday junction DNA helicase RuvA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876888|ref|ZP_05249598.1| holliday junction DNA helicase ruvA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842909|gb|EET21323.1| holliday junction DNA helicase ruvA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 217 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG+I +L+ +R+D +L Sbjct: 1 MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQISLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +D++ F L V G+GAR A+ +LS + +T L+ I ++ ++A +PGI K Sbjct: 61 YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV---------QQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + + + V Q S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYSQSSSTSASVNANSVQHTQTPAAISNSIFSESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A + + ++ IR AL+ Sbjct: 181 YKQKDAEKMIRGTI---GESTTAAEAIRKALQ 209 >gi|83647602|ref|YP_436037.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396] gi|123739873|sp|Q2SCL2|RUVA_HAHCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83635645|gb|ABC31612.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396] Length = 204 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +VL+DV GV Y + P+ L L K+G+ C+LF +R+D L Sbjct: 1 MIGRLVGKLAENHPPFVLLDVNGVGYEVEVPLSALGYLPKLGESCSLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR+ F LL V GVG ++A+ +LS ++ E VE + N + ++PG+ K Sbjct: 61 YGFIRREDRELFRLLLKVNGVGPKMAVAILSHMSPNEFVECVRGDNLTRLTKMPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + ++ + QA A + LGY +A+ A Sbjct: 121 AERLLIEMRDRIKDWGAGDRETATPELLSQAVGGHSHLEEAEAAL--LALGYKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V K+ ++IRLAL+ + Sbjct: 179 INAV---NKDGMGRDELIRLALKGM 200 >gi|330991872|ref|ZP_08315821.1| Holliday junction ATP-dependent DNA helicase ruvA [Gluconacetobacter sp. SXCC-1] gi|329760893|gb|EGG77388.1| Holliday junction ATP-dependent DNA helicase ruvA [Gluconacetobacter sp. SXCC-1] Length = 207 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 114/206 (55%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + D +IDV GV Y++ RTL+ L + + + VET +R+D I L Sbjct: 1 MIAQLRGLLAQVEADRCVIDVGGVGYLVQASSRTLAVLPQPPELALVLVETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R WF LL +VQGVGA+VA+ +LS + EL+ +I + ++ + G+ ++ Sbjct: 61 YGFAEASERAWFRLLTTVQGVGAKVALAILSVLPPPELMMAIGSGDKTMLTRAGGVGARL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ K + + + V + S A +A+ AL LG+ + +A Sbjct: 121 AQRIVTELRDKCEGMPTGMVATGGGVPGVTITRPTAHSVAADAVLALSGLGFRRGEAQPV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+++ + D +IR AL+ ++ Sbjct: 181 VERVIERHEGQVDLDIVIRDALKELA 206 >gi|167564063|ref|ZP_02356979.1| Holliday junction DNA helicase motor protein [Burkholderia oklahomensis EO147] gi|167571207|ref|ZP_02364081.1| Holliday junction DNA helicase motor protein [Burkholderia oklahomensis C6786] Length = 193 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L + L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTSEKVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++ALV LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGPLAGAASPSDHATDILNALVALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|160871606|ref|ZP_02061738.1| holliday junction DNA helicase RuvA [Rickettsiella grylli] gi|159120405|gb|EDP45743.1| holliday junction DNA helicase RuvA [Rickettsiella grylli] Length = 199 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI +++G + +L++V Y I + T L G+ L+ + +R+D Sbjct: 1 MINRLRGILVEKQPPILLVEVANAFTYEIQASMHTFYQLPHCGEKVFLYTQFIVREDGHF 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F L V GVG +VA+G+LS+I TE V + QN + +PGI K Sbjct: 61 LYGFSTPEERFLFTQLLKVSGVGPKVALGILSKIEVTEFVSCVEQQNVNSLQAVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ + +LS + + ++ I S+ +AI+AL+ LGY +A+ Sbjct: 121 TAERLIIEMRDRLRNLSHNQPEIL-----DKNTIQSLKHIQQDAIAALMALGYKNQEASR 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV+ + ++ +IR AL I+ Sbjct: 176 AVLRIKDASLSL---EALIRHALNTIN 199 >gi|149196353|ref|ZP_01873408.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa HTCC2155] gi|149140614|gb|EDM29012.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa HTCC2155] Length = 206 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + L +IDV GV Y + P+ T L K+G L + +R+D + L Sbjct: 1 MIAHLKGQLVELELSNAVIDVGGVGYYVDIPMSTYDRLPKVGSPVALRIHMTVREDAMNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R +F ++ SV G+G ++A+ LS + E+I N K++++I G+ ++ Sbjct: 61 YGFATDEERSFFRMITSVSGIGPKIALAALSALPTETFCEAIQEGNIKLLSKISGVGKRM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +L + + + ++I AL LGY D Sbjct: 121 AERMVVELRDKVGALGMTSAFVAKVADDDMS--AQDKEAFNDSIMALEALGYRPDTIRKT 178 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207 V ++ II+ AL A++ Sbjct: 179 VKTIFDGLSPAQRSSENIIKAALSAMNS 206 >gi|319786205|ref|YP_004145680.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis 11-1] gi|317464717|gb|ADV26449.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis 11-1] Length = 196 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L ++G +LF ++D + L Sbjct: 1 MIGRLRGTLVLKQPPWLVVDVNGVGYELEAPMSTFYDLPELGREVSLFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E + + + +IPGI K Sbjct: 61 YGFLRESERRLFRDVQKVSGIGAKIALAVLSGVSVDEFARLVQAGDVTALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A D++ + +A +AL LGY A Sbjct: 121 AERMVVELRDRA--------ADLAGGGAVAGMTAAPGDPMADAATALQQLGYKPADAQRM 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + IIR AL++ Sbjct: 173 ---ARDAAAPGDEAAAIIRKALQS 193 >gi|302879788|ref|YP_003848352.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans ES-2] gi|302582577|gb|ADL56588.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans ES-2] Length = 193 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DVQGV Y + P+ T L + + L + +R+D L Sbjct: 1 MIGRLSGILLEKTPPQILLDVQGVGYELEVPMSTFYNLPPLHEKVVLHTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVG ++A+ VLS ++ +L +++ + + + +IPG+ K Sbjct: 61 YGFGSTDERIAFRQLLKISGVGPKLALSVLSGLSLNDLADAVANKEAGRLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + AH + S + + ++AL LGY +A A Sbjct: 121 AERLLLELEGKFTVMGVAM-----------AHGVPVTSASGDIVNALQALGYNDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 K+ S IR AL+ +S Sbjct: 170 ----AKQLPKDVSVSDGIRQALKFLS 191 >gi|94971750|ref|YP_593798.1| Holliday junction DNA helicase RuvA [Candidatus Koribacter versatilis Ellin345] gi|94553800|gb|ABF43724.1| Holliday junction DNA helicase subunit RuvA [Candidatus Koribacter versatilis Ellin345] Length = 202 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 14/205 (6%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G I + V++D GV Y + + T S LG G +L+V TH+R+D + L+ Sbjct: 11 IAHLRGKILAKRPNQVIVDCGGVGYDVTISVPTFSELGADGTEASLYVHTHVREDALALY 70 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF+ ++Q F L +V G+G ++A+ VLS + A E+V +I + + +IPG+ K A Sbjct: 71 GFVHPQEKQLFERLLTVSGIGPKLAITVLS-MAANEVVGAIRGNDVTRLTKIPGVGKKTA 129 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK K + + + I + ISALVNLGY + A AV Sbjct: 130 ERMILELKDKLETFGATPE------------IPKASQAEEDVISALVNLGYQRAAAEQAV 177 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 LK + A D Q+ R AL +S Sbjct: 178 TRALKTGSSSAFD-QLFRGALGMLS 201 >gi|71909671|ref|YP_287258.1| Holliday junction DNA helicase motor protein [Dechloromonas aromatica RCB] gi|90134857|sp|Q478E3|RUVA_DECAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71849292|gb|AAZ48788.1| Holliday junction DNA helicase subunit RuvA [Dechloromonas aromatica RCB] Length = 192 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DV GV Y + P+ T L G+ L +R+D L Sbjct: 1 MIGRLTGILAEKNPPQIVLDVNGVGYELDVPMSTFYNLPAAGEKTKLLTHFAVREDGHYL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F L V G+GAR A+ VLS ++ +L ++ Q + +IPGI K Sbjct: 61 YGFLTEAERFAFRQLLKVSGIGARTALSVLSGLSVGDLAAAVAQQELGRLIKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V + ++ + +AL+ LGY + +A +A Sbjct: 121 AERLLLELKGKLADATGV------------SLHPAVDDSKQDISNALLALGYNEKEAASA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +K+ S IR AL+ +S Sbjct: 169 ----MKQLPADVSTSDGIRAALKLLS 190 >gi|332527517|ref|ZP_08403569.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus JA2] gi|332111924|gb|EGJ11902.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus JA2] Length = 192 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ T L +G+ L E +R+D +L Sbjct: 1 MIGRLSGTLAEKTPPQLLVDVGGVGYEVDVPMSTFYHLPALGERVVLLTEFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R F LL + GVG R+A+ +LS ++ EL +++ Q+ + ++PGI K Sbjct: 61 FGFLTASERATFRLLVKISGVGPRMALALLSGLSVAELSQAVAAQDGARLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + AL+ LGY + +A A Sbjct: 121 AERVLLELKGKLAPDLGLPSAAGGAGDAHAD-----------IVQALMALGYNEREAQAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 K S+ I++AL+A++ Sbjct: 170 ----AKALPKDVGVSEGIKVALKALN 191 >gi|312797266|ref|YP_004030188.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI 454] gi|312169041|emb|CBW76044.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI 454] Length = 193 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L GD TL + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPGTGDKITLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +RQ F L + G+GAR+A+ VLS ++ ++L +++ Q++ + ++PGI K Sbjct: 61 YGFLTQQERQTFRELLKISGIGARMALAVLSGMSVSDLAQTVTQQDTARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + + AL++LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADIGAAASAASSSDHAPDILHALLSLGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191 >gi|84623202|ref|YP_450574.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899002|ref|YP_200300.2| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577435|ref|YP_001914364.1| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae PXO99A] gi|90146231|sp|Q5H2A6|RUVA_XANOR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123725563|sp|Q2P577|RUVA_XANOM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560139|sp|B2STK2|RUVA_XANOP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84367142|dbj|BAE68300.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521887|gb|ACD59832.1| holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae PXO99A] Length = 194 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSSGAPITGQLG----------PDAISEATVALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A +IR AL+A Sbjct: 171 ARDAGAEGGEVA---TVIRKALQA 191 >gi|293603639|ref|ZP_06686060.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter piechaudii ATCC 43553] gi|292818075|gb|EFF77135.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter piechaudii ATCC 43553] Length = 190 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +DV G+ Y I + TL L + G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKLPPTICVDVGGLGYDIDVSMTTLYSLPETGARVTLYTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ +L ++I LQ S + ++PGI K Sbjct: 61 YGFGTAGERSAFRELIKVSGIGARTALSVLSGMSVADLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A + P + ++AL+ LGY + ++ +A Sbjct: 121 AERLLLEMRGKLGA-------------DIGAASHATPDHQSDILNALLALGYSEKESLSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK S I+ AL+A++ Sbjct: 168 ----LKGLPEGVGVSDGIKQALKALA 189 >gi|257095744|ref|YP_003169385.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048268|gb|ACV37456.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 191 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + V++DV G+ Y + P+ T L G+ +L +R+D L Sbjct: 1 MIGRLSGILLEKNPPQVVLDVHGIGYELDVPMSTFYNLPANGEQVSLLTHFVVREDGQFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +R F L + GVGAR+A+ VLS ++ ++L + + Q + ++PGI K Sbjct: 61 YGFASEPERFAFRQLLKISGVGARLALSVLSGLSVSDLAQVVARQEVGRLTKVPGIGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + A I + ++AL+ LGY +A A Sbjct: 121 AERLLLELKGKL-------------ADALPASIAPADGARSDILNALLALGYNDREAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +K + S IR AL+ +S Sbjct: 168 ----MKLLPDETTTSDGIRQALKLLS 189 >gi|15966503|ref|NP_386856.1| Holliday junction DNA helicase motor protein [Sinorhizobium meliloti 1021] gi|307300460|ref|ZP_07580240.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C] gi|307318325|ref|ZP_07597760.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83] gi|20455253|sp|Q92M91|RUVA_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15075774|emb|CAC47329.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti 1021] gi|306896007|gb|EFN26758.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83] gi|306904626|gb|EFN35210.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C] Length = 205 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 138/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+V++DV GV Y+ +C RTL LG G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLGKLGSAGEAAVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T EL +I LQ+ I++ PG+ K+ Sbjct: 61 FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + S + + K++ + +A+SAL NLGY +DQA A Sbjct: 121 AVRIVTELKNKAPAFSGEMAPSIGL--KQELGEGVAAAPVADAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL L+ +S Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204 >gi|134302038|ref|YP_001122007.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis WY96-3418] gi|166230553|sp|A4IY85|RUVA_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134049815|gb|ABO46886.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis WY96-3418] Length = 216 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFIVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|227529693|ref|ZP_03959742.1| crossover junction endoribonuclease subunit A [Lactobacillus vaginalis ATCC 49540] gi|227350359|gb|EEJ40650.1| crossover junction endoribonuclease subunit A [Lactobacillus vaginalis ATCC 49540] Length = 200 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++V G+ Y + + K T++V +R D I L Sbjct: 1 MYEYLTGLVTVVEPRYIVVEVNGIGYRLLVANPYRYHIDKR-QKVTVYVYQAVRDDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q FM L +V G+G + A+ +L+ L+ +I + K + + PGI K Sbjct: 60 FGFSDEDEKQLFMQLINVSGIGPKSALAILANPDHEGLINAIANNDVKYLTRFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I +LK K L+ + + E ++ +A+ AL LGY + + Sbjct: 120 ASQICLDLKDKIERLAPSESNLLKPLLPENENV---NDALQDALEALTALGYKEREVKR- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L+KE + +R ALR ++ Sbjct: 176 IKKELEKEGE-TSTEEYLRHALRLLN 200 >gi|311031507|ref|ZP_07709597.1| Holliday junction DNA helicase RuvA [Bacillus sp. m3-13] Length = 203 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E + +YV+++V GV Y + P + + + T++ H+R+D + L Sbjct: 1 MIDFIRGFVEYVSPEYVVVEVMGVGYQVNAPNPFIYQVDR-DKEVTIYTYQHVREDILAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D+ FM L +V G+G + A+ +L+ ++V +I ++ K + + PG+ K Sbjct: 60 YGFKTREDKNLFMKLLNVTGIGPKGALAILASGQPAQVVHAIENEDEKFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L D+ + E + + S A+ AL LGYG+ + Sbjct: 120 ARQIILDLKGKLNDLVPSAFPDLFQPDVEVSVPGASSSALEEALEALKVLGYGEREIKKI 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K++ Q ++ AL+ + Sbjct: 180 VPALQKED---LSTDQYVKRALQLL 201 >gi|238019731|ref|ZP_04600157.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748] gi|237863772|gb|EEP65062.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748] Length = 202 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 112/205 (54%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + Q + A AI ALV+LGY + Sbjct: 120 AERLVLELKDKLAKMTHISAESPAAI---QPIGVAASGAAGEAIEALVSLGYSERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ + D S++I+++L + Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198 >gi|208779418|ref|ZP_03246764.1| holliday junction DNA helicase RuvA [Francisella novicida FTG] gi|254372980|ref|ZP_04988469.1| hypothetical protein FTCG_00553 [Francisella tularensis subsp. novicida GA99-3549] gi|151570707|gb|EDN36361.1| hypothetical protein FTCG_00553 [Francisella novicida GA99-3549] gi|208745218|gb|EDZ91516.1| holliday junction DNA helicase RuvA [Francisella novicida FTG] gi|332678321|gb|AEE87450.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida Fx1] Length = 216 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|85858586|ref|YP_460788.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB] gi|123725225|sp|Q2LRA9|RUVA_SYNAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85721677|gb|ABC76620.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB] Length = 204 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + V+ID G+ Y + P+ T L +G +LFV T +QD I L Sbjct: 1 MIAQIRGKLILKTVSMVIIDNHGIGYEVMIPLSTYYELPDVGSEVSLFVYTFFKQDSILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF ++ ++Q F L+ SV G+G R+A+ VLS I ++EL+ +I + + ++PG+ K+ Sbjct: 61 VGFCTENEKQLFKLMISVSGIGPRLAVNVLSGINSSELIHAIANNDLNRLLKVPGLGRKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +S Q + +AISAL+NLGY A A Sbjct: 121 AQRVILELRDKVSGWTSKEQITF---INNKKDAIDQSVMEEDAISALINLGYKSQAAKDA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V+ + I++ AL+ ++ Sbjct: 178 IDRVISEGGENKSLDVILKKALKVLA 203 >gi|189462206|ref|ZP_03010991.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136] gi|189431109|gb|EDV00094.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136] Length = 198 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +I+ G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGELTEITPAMAVIECNGLGYGINVSLNTYSAI-QGKKEVKLYIYESIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS +T +EL I N K++ + GI +K Sbjct: 60 YGFATKQERELFLLLISVSGIGGNTARMILSALTPSELCNVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + ++ I + AI+AL LG+ Q + Sbjct: 120 AQRIIVDLKDKISTTDIGTSTTSAPIS-----ITANNEIYEEAIAALTMLGFAQAPSQKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK+E + A ++I+LAL+ + Sbjct: 175 VAAILKEEPDAA-VEKVIKLALKRL 198 >gi|78048836|ref|YP_365011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325929365|ref|ZP_08190495.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans 91-118] gi|90146217|sp|Q3BQF2|RUVA_XANC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78037266|emb|CAJ25011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540277|gb|EGD11889.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans 91-118] Length = 194 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSSGAPITGQLG----------PDAVSEATVALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A +IR AL+A Sbjct: 171 ARDAGAEGDEVA---TVIRKALQA 191 >gi|313894615|ref|ZP_07828178.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158 str. F0412] gi|313440805|gb|EFR59234.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158 str. F0412] Length = 202 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + Q + AI ALV+LGY + Sbjct: 120 AERLVLELKDKLAKMTHISTESSAVI---QPIGVTASGATGEAIEALVSLGYSERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ + D S++I+++L + Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198 >gi|332977850|gb|EGK14603.1| crossover junction ATP-dependent DNA helicase RuvA [Desmospora sp. 8437] Length = 204 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + ++++ GV Y+I+C T + G+ T++ +R+D L Sbjct: 1 MIEFIRGTVAYRATEAIVVETGGVGYLIFC---THPLEWEEGEEVTVYTHQVIREDAHTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LL V G+G +VA+ V LV ++ ++ + + ++PG+ K Sbjct: 58 YGFRERQVRDLFRLLLEVSGIGPKVALAVTGSGDPGRLVNAVEQEDLRFLTKLPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S AI AL LGY +++AT A Sbjct: 118 AQRIVLDLKDKLKKAGFSESTFSDVPVGISGEVARAGS--AEAIEALQALGYNEEEATRA 175 Query: 181 VVSVLKK-EKNIADDSQIIRLALR 203 V K + + Q IR AL+ Sbjct: 176 VAMARKDFGEEEPELDQWIRRALQ 199 >gi|319406256|emb|CBI79893.1| holliday junction DNA helicase RuvA [Bartonella sp. AR 15-3] Length = 214 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 80/208 (38%), Positives = 136/208 (65%), Gaps = 2/208 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ +EL ++I L ++ +I++ PG+ K+ Sbjct: 61 FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVSELSQAITLNDTAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK K + LS ++ + + +A+ AL+ LG+ D+ATTA Sbjct: 121 SERIVSELKSKTL-LSKEDNKNPALSSSLNFSSEEKHQPTHDALLALIKLGFDHDKATTA 179 Query: 181 VVSVLKKEK-NIADDSQIIRLALRAISC 207 + S L K + + ++R +LR +S Sbjct: 180 LASALSALKGEMISSALLVRHSLRLLSS 207 >gi|323702066|ref|ZP_08113734.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans DSM 574] gi|323532948|gb|EGB22819.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans DSM 574] Length = 199 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +V++DV G+ Y +Y P T L G + +R+D I++ Sbjct: 1 MIAYIKGKLAYIGAGWVVVDVNGIGYRLYIPAMT--KLPSTGQEVQFYTHMAVREDGIQI 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + + F+ L V GVG +VA+ V++ + I N + ++PG+ K Sbjct: 59 YGFLQEEELECFLALLDVAGVGPKVALAVVAHLPPGVFKGIIASGNVNQLVKVPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM ELK K +++ + + + +A+ AL++LGY Q++A A Sbjct: 119 AQRIMLELKDKLRGPAALPE-------PSETITPAPGRIEDDAVVALLSLGYAQNEAREA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + D S +I+ AL+ ++ Sbjct: 172 VRQAM-GLGLTGDVSALIKAALKELA 196 >gi|311104199|ref|YP_003977052.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8] gi|310758888|gb|ADP14337.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8] Length = 190 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +DV G+ Y I P+ TL L G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKLPPTICVDVGGLGYDIDVPMSTLYSLPDTGARVTLYTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ +L ++I LQ S + ++PGI K Sbjct: 61 YGFASAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A + P + ++AL+ LGY + ++ +A Sbjct: 121 AERLLLEMRGKLGA-------------DIGASPHAAPDNQSDILNALLALGYSEKESLSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK S I+ AL+A+ Sbjct: 168 ----LKTLPEGVGVSDGIKQALKAL 188 >gi|254473163|ref|ZP_05086561.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062] gi|211957884|gb|EEA93086.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062] Length = 204 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ +D+VL+DVQGVCY ++CP R L L ++G+ L +ET +R+D I+L Sbjct: 1 MIGKLKGVVDSYGDDFVLLDVQGVCYQVHCPSRVLQQLPRVGEAAVLAIETMVREDMIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R+WF +L +VQGVGA+VA+G+L + A+E+ +I L + I + PG+ ++ Sbjct: 61 FGFAEDSEREWFRILMTVQGVGAKVALGILGIMKASEVANAIALGDKTAITRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + +SV ++ ++ S P +A+SAL NLGY QA+ A Sbjct: 121 AERIVTELKDKAPAFASVEDDTIAVSQSVAENVASRP--VADAVSALSNLGYQPAQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K A ++IRL L+ ++ Sbjct: 179 VAAAVKTAGEDASAEKLIRLGLKELA 204 >gi|89256283|ref|YP_513645.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica LVS] gi|115314735|ref|YP_763458.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica OSU18] gi|156502349|ref|YP_001428414.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167011087|ref|ZP_02276018.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica FSC200] gi|254367618|ref|ZP_04983639.1| holliday junction DNA helicase subunit A [Francisella tularensis subsp. holarctica 257] gi|254369266|ref|ZP_04985278.1| holliday junction DNA helicase [Francisella tularensis subsp. holarctica FSC022] gi|290953118|ref|ZP_06557739.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica URFT1] gi|295313646|ref|ZP_06804230.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica URFT1] gi|122325244|sp|Q0BM63|RUVA_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123094517|sp|Q2A3Q7|RUVA_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230551|sp|A7NBV5|RUVA_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89144114|emb|CAJ79371.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. holarctica LVS] gi|115129634|gb|ABI82821.1| crossover junction endodeoxyribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|134253429|gb|EBA52523.1| holliday junction DNA helicase subunit A [Francisella tularensis subsp. holarctica 257] gi|156252952|gb|ABU61458.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122216|gb|EDO66356.1| holliday junction DNA helicase [Francisella tularensis subsp. holarctica FSC022] Length = 216 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|301060127|ref|ZP_07200994.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2] gi|300445639|gb|EFK09537.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2] Length = 200 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++ V GV Y ++ P+ T L + L + TH+R+D + L Sbjct: 1 MISYLSGTLFEKSTQSIIVQVGGVGYEVFVPLSTFYTLPEKDGPVNLHIHTHVREDALIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L++ F++L SV G+G +++ +LS + A EL+ +I ++ + IPGI K Sbjct: 61 FGFSTKLEKSLFLMLVSVSGIGPKLSANILSGMGAEELLRAIAAGDAPRLQAIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK +A + S Q S ++ + +SAL+NLGY A A Sbjct: 121 AERIALELKDRAAAFSEDAQMPPSVTSE-----TGTEKAMEDTLSALINLGYSAKMARAA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + K+ +I+ +L+ ++ Sbjct: 176 MEKAKMRVKD-KTLEGLIKESLKILA 200 >gi|51892298|ref|YP_074989.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum IAM 14863] gi|81389173|sp|Q67Q98|RUVA_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|51855987|dbj|BAD40145.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum IAM 14863] Length = 205 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+V+IDV GV Y P T S L G L+ +R+D + L Sbjct: 1 MIAHLRGELVTAGADWVVIDVAGVGYRCLVPASTRSRLPAQGAAVQLYTYLQVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL V GVG +VA+ VLS ++ ++ I ++PGI K Sbjct: 61 YGFLTQAEYDLFELLLRVDGVGPKVALAVLSTTDPAAFRRAVAFEDLDAICRVPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + A AL+ LGY + +A A Sbjct: 121 AQRLVLELKDKIGAVPAGG---GGVPDGLPVAVAPAGDAWAEASEALIALGYSRGEAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + ++RLAL+ + Sbjct: 178 LARVRAEAGEAPSVETLVRLALKQL 202 >gi|126663097|ref|ZP_01734095.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38] gi|126624755|gb|EAZ95445.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38] Length = 193 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + V+ID GV Y I + T S L + LF +++D L Sbjct: 1 MIAHIQGRLVEKTPTEVIIDCNGVGYHINISLHTYSLLPDS-ESLKLFTFLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F LL SV GVGA +A +LS + ++++++I + + + GI K Sbjct: 60 YGFVEKQERELFKLLISVSGVGASIARTMLSSLAPSQIIQAIASNDIGTMQSMKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + N ++ + + A+SAL LG+ + A Sbjct: 120 AQRIILDLKEKVLKVY----------NLDEVSVIESNTNKDEALSALEVLGFARKAAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++++ N A +I+ AL+ + Sbjct: 170 IDKIIRETPN-ATVENLIKQALKNL 193 >gi|317402225|gb|EFV82814.1| Holliday junction DNA helicase [Achromobacter xylosoxidans C54] Length = 190 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV G+ Y I P+ TL L + G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKLPPTVCVDVNGLGYDIDVPMSTLYSLPETGARVTLYTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ +L ++I LQ S + ++PGI K Sbjct: 61 YGFATAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A ++ + ++AL+ LGY + ++ +A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATAHAVHDNQSDILNALLALGYSEKESLSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK S I+ AL+A+ Sbjct: 168 ----LKTLPEGVGVSDGIKQALKAL 188 >gi|326799497|ref|YP_004317316.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium sp. 21] gi|326550261|gb|ADZ78646.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium sp. 21] Length = 194 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + YV++DV GV Y + + T + + C L+V +++D L Sbjct: 1 MYEYLNGKLAYKCPTYVVLDVNGVGYHVNISLYTFGKIKDC-EQCKLYVSFQVKEDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L SV G+GA +LS IT TE+ +I+ + K I +I GI K Sbjct: 60 YGFAEEGERRLFNHLLSVSGIGASTGRMILSSITPTEIQTAIVQGDVKQIQRIKGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K + + S A++ALV LG+ + QA Sbjct: 120 AQRIILELQDKLKKEGA----------DTLISVPQHQSVPEEALTALVMLGFNKAQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K ++I+ ALR + Sbjct: 170 LTEIQKNNAAQFTVEELIKEALRRL 194 >gi|110801789|ref|YP_699225.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101] gi|122956588|sp|Q0SRN2|RUVA_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110682290|gb|ABG85660.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101] Length = 201 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+GD L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYRIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K Sbjct: 61 YGFTTKEELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++ S +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKPDELTSEEEQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDK----TLSIENMIKESLKLL 199 >gi|187735908|ref|YP_001878020.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC BAA-835] gi|187425960|gb|ACD05239.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC BAA-835] Length = 220 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + Y +++DV GV Y + P+ T L G TL H+R++ Sbjct: 24 MIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDRLNPLPGRELTLKTYLHVRENMQV 83 Query: 60 LFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF +D +R F+LL V G+G A+ +L ++ + ++++ + IA+ G+ Sbjct: 84 LYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSVEQFKQAVVGGDVSGIARAKGVGK 143 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A RI+ ELK K ++ Q ++ +A AL+ LG+ Q ++ Sbjct: 144 KTAERIVLELKDKVGLAATWEAQAQGATSQAAG----------DAELALIALGFKQVESR 193 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + LK + AD ++IR ALR+++ Sbjct: 194 KAIAAHLKDHPD-ADVDELIRAALRSMN 220 >gi|226311452|ref|YP_002771346.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] gi|254766947|sp|C0ZAN3|RUVA_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226094400|dbj|BAH42842.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] Length = 205 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +Y++I+ G+ Y ++CP + G+ LF H+R+D I L Sbjct: 1 MIDFVEGTLSYLDSEYIVIETGGIGYRLFCP-NPYQFVRYEGNKTKLFTHHHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ T +LV ++ +N + + PGI K Sbjct: 60 YGFATRDERDLFRKLLDVSGIGPKGGLAILAAATPEQLVMAVQQENVTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + ++ + S A+ AL LGY + Sbjct: 120 AQRIILDLKDKLVGYTP--SAILTVAAGDLTAGEQAVSALNEALDALTALGYSDGELQKI 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ +K K ++I+ L + Sbjct: 178 RNTLSEKSKEGDGVEKLIKQGLALL 202 >gi|187931869|ref|YP_001891854.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. mediasiatica FSC147] gi|229560033|sp|B2SH67|RUVA_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187712778|gb|ACD31075.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. mediasiatica FSC147] Length = 216 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVIEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|83719212|ref|YP_441795.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis E264] gi|167580615|ref|ZP_02373489.1| Holliday junction DNA helicase motor protein [Burkholderia thailandensis TXDOH] gi|167618721|ref|ZP_02387352.1| Holliday junction DNA helicase motor protein [Burkholderia thailandensis Bt4] gi|257137961|ref|ZP_05586223.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis E264] gi|123753836|sp|Q2SZ54|RUVA_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83653037|gb|ABC37100.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis E264] Length = 193 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPRILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGPLAGAASPSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|182624414|ref|ZP_02952198.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str. JGS1721] gi|177910417|gb|EDT72794.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str. JGS1721] Length = 201 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+G+ L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K Sbjct: 61 YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + + +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKP--DELTSEEGQLIEGINDNSDYSFNINETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDK----TLSIENMIKESLKLL 199 >gi|282850099|ref|ZP_06259481.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC 17745] gi|282580288|gb|EFB85689.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC 17745] Length = 202 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 112/205 (54%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T +II + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + Q + A AI ALV+LGY + Sbjct: 120 AERLVLELKDKIAKMTHISSESSATI---QPIGVAANGVAGEAIEALVSLGYLERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ + D S++I+++L + Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198 >gi|18310930|ref|NP_562864.1| Holliday junction DNA helicase motor protein [Clostridium perfringens str. 13] gi|168208649|ref|ZP_02634274.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str. ATCC 3626] gi|168214131|ref|ZP_02639756.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE str. F4969] gi|168215574|ref|ZP_02641199.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC 8239] gi|169343575|ref|ZP_02864574.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str. JGS1495] gi|20455244|sp|Q8XJ13|RUVA_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|18145612|dbj|BAB81654.1| holliday junction DNA helicase [Clostridium perfringens str. 13] gi|169298135|gb|EDS80225.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str. JGS1495] gi|170713198|gb|EDT25380.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str. ATCC 3626] gi|170714360|gb|EDT26542.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE str. F4969] gi|182381996|gb|EDT79475.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC 8239] Length = 201 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+GD L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K Sbjct: 61 YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + + +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKP--DELTSEEGQLIEGINDNSDYSFNINETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDK----TLSIENMIKESLKLL 199 >gi|218133570|ref|ZP_03462374.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC 43243] gi|217990945|gb|EEC56951.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC 43243] Length = 203 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI IKG + + E ++++ G+ I P + + G + ++++D + Sbjct: 1 MISYIKGELTEVSETSIVVETSSGIGMNIIVPQTVIDKMPSCGSMVKIHTYLNVKEDSMT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF++ D F LL +V G+G + A+ +LS IT +L +++ + K I++ PGI K Sbjct: 61 LYGFINREDVDIFRLLITVNGIGPKGALAILSTITPDDLRFAVLSDDVKAISRAPGIGAK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K + + ++ E+ + + ALV LGYG+ +A Sbjct: 121 TAQRMIIELKDKLK----LEEAFEIRLSHEEVDDLPAGDARNDTVQALVALGYGRSEAAR 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V + D Q+I+ AL+ ++ Sbjct: 177 AVNMV--DGADSMDSEQLIKAALKKLA 201 >gi|170739181|ref|YP_001767836.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46] gi|229560104|sp|B0UA56|RUVA_METS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|168193455|gb|ACA15402.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46] Length = 205 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 128/206 (62%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y ++C RTL L G+ L +ET +R+D IRL Sbjct: 1 MIGKLKGVVDSYGEDFVILDVHGVGYEVHCSARTLQRLPPAGEATDLAIETVVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+G+LS + EL +I + +A+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGLLSVLEPAELATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + V + +A P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPVDPALVRLAGAVEARTA--PQPVADAISALVNLGYPQAQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + L+ A+ +IRL LR ++ Sbjct: 179 VAAALQSAGAEAEAKTLIRLGLRELA 204 >gi|319953601|ref|YP_004164868.1| holliday junction DNA helicase subunit ruva [Cellulophaga algicola DSM 14237] gi|319422261|gb|ADV49370.1| Holliday junction DNA helicase subunit RuvA [Cellulophaga algicola DSM 14237] Length = 193 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +V+I+ GV Y + + T S + + LF +++D L Sbjct: 1 MIHHLKGKLVEKNPTHVVIECGGVGYFVNISLHTFSKITDA-ENIQLFTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+GA +A +LS ++ ++ ++I N I I GI K Sbjct: 60 FGFSEKSEREIFRLLVSVSGIGASIARTMLSSMSPMQIRDAIATANVSAIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + ++ S + A+SAL LG+ + Q+ Sbjct: 120 AQRVILDLKDKILKIYDI----------DEVSSISNNTNKDEALSALEVLGFIRKQSEKI 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL ++ ++ II+L+L+ + Sbjct: 170 VDKVLAQDASL-SVEDIIKLSLKNL 193 >gi|294651065|ref|ZP_06728403.1| crossover junction crossover junction ATP-dependent DNA helicase RuvA [Acinetobacter haemolyticus ATCC 19194] gi|292823044|gb|EFF81909.1| crossover junction crossover junction ATP-dependent DNA helicase RuvA [Acinetobacter haemolyticus ATCC 19194] Length = 201 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCIIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ L+ +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ + + + + P A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKALAHSTGSTTNAAAAQIQFMTNSP--VAEAEAALQSLGYKPAEAQ-- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 176 -KAVAAVKADYTESADIIRAALKSM 199 >gi|237723715|ref|ZP_04554196.1| holliday junction DNA helicase ruvA [Bacteroides sp. D4] gi|265756839|ref|ZP_06090827.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA] gi|229437926|gb|EEO48003.1| holliday junction DNA helicase ruvA [Bacteroides dorei 5_1_36/D4] gi|263233625|gb|EEZ19245.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA] Length = 197 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I + V++D G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + VN E + A+SAL LG+ Q + Sbjct: 120 AQRIIVDLKDKIAT------SGVETVNSEMFANPANTEIHDEAVSALTMLGFAQAASQKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK+E A ++I+LAL+ + Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197 >gi|118497616|ref|YP_898666.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. novicida U112] gi|195536317|ref|ZP_03079324.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. novicida FTE] gi|166230552|sp|A0Q6P7|RUVA_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118423522|gb|ABK89912.1| holliday junction DNA helicase, subunit A [Francisella novicida U112] gi|194372794|gb|EDX27505.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. novicida FTE] Length = 216 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMSRSAM---GDATTAAEVIRKALQ 209 >gi|170693379|ref|ZP_02884538.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M] gi|170141534|gb|EDT09703.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M] Length = 193 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGTVSASGHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V S+ I+LAL+A+S Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191 >gi|225012191|ref|ZP_03702628.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-2A] gi|225003746|gb|EEG41719.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-2A] Length = 193 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + V+ID G+ Y + + T S LG + LF +R+D L Sbjct: 1 MITQIIGRLVEKSPTQVVIDCHGIGYEVNISLNTYSQLGD-DENIKLFTHLQIREDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++R F LL SV G+GA +A +LS + ++ +II ++ I I GI +K Sbjct: 60 FGFFTPMERSVFRLLLSVSGIGASIARTMLSSLEPQQIQRAIISEDLNTIKSIKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++L E+ + + A+SAL LGY + Q+ Sbjct: 120 AQRVLIELKDKMLNLYE----------GEEIQSFANNTIKEEALSALEVLGYSRKQSEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ + +I+ AL + Sbjct: 170 IDNAIQSAPE-SSVEGLIKAALNKL 193 >gi|117923791|ref|YP_864408.1| Holliday junction DNA helicase RuvA [Magnetococcus sp. MC-1] gi|166230563|sp|A0L4V9|RUVA_MAGSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117607547|gb|ABK43002.1| Holliday junction DNA helicase subunit RuvA [Magnetococcus sp. MC-1] Length = 204 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG++ + D+V++DV GV Y ++ + T + L +G+ C L+ TH+R+D L Sbjct: 1 MIAQLKGSLAAKHPDHVVMDVHGVGYRVFISLATYNELPTVGEACLLYTVTHVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ R+ F LL SV G+G ++A+ LS T L+ ++ ++ ++ IPG+ K Sbjct: 61 YGFHSESQRKVFNLLTSVNGIGTKLALAALSSHTPEALLTALSREDLTLLCTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K +L A+ + SAL+NLGY Q A Sbjct: 121 AQRMAMELKDKLGALPMAAPTTAIGAATMAANPAGL---REEVASALLNLGYKPPQVDAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L I D S ++ AL+ ++ Sbjct: 178 LAK-LFSAGEITDISVALKGALKLLA 202 >gi|110800505|ref|YP_696628.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC 13124] gi|123148615|sp|Q0TP12|RUVA_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110675152|gb|ABG84139.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC 13124] Length = 201 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+G+ L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K Sbjct: 61 YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + + +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKP--DELTSEEGELIEGINDNSDYSFNINETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDK----TLSIENMIKESLKLL 199 >gi|298206830|ref|YP_003715009.1| Holliday junction DNA helicase motor protein [Croceibacter atlanticus HTCC2559] gi|83849464|gb|EAP87332.1| Holliday junction DNA helicase motor protein [Croceibacter atlanticus HTCC2559] Length = 193 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + +++D GV Y + + T L K + +F +R+D L Sbjct: 1 MITQLAGQLIEKNPTNIIVDCGGVGYFVNISLHTFG-LIKNEECVKIFTHLQVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL V G+GA A +LS +T ++ E+I + I + GI +K Sbjct: 60 FGFAEKAEREVFRLLIGVSGIGASTARTMLSSLTPQQVTEAISQGDVATIQSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K +++ + + S N ++ A+SAL LGY + Q+ Sbjct: 120 AQRVIIDLKDKILNVVGLDEVLPSQGNTQK----------EEALSALETLGYTRKQSDKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK + A II+LAL+ + Sbjct: 170 VAGILKTDPE-ASVETIIKLALKKL 193 >gi|226952125|ref|ZP_03822589.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC 27244] gi|226837134|gb|EEH69517.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC 27244] Length = 201 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ L+ +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L++ + + + + P A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKALANSTGGTTNTAAAQIQFMANSP--VAEAEAALQSLGYKPAEAQ-- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 176 -KAVAAVKADYTESADIIRAALKSM 199 >gi|170699606|ref|ZP_02890645.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria IOP40-10] gi|171319639|ref|ZP_02908733.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5] gi|172059669|ref|YP_001807321.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6] gi|229560008|sp|B1YTE0|RUVA_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170135488|gb|EDT03777.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria IOP40-10] gi|171095130|gb|EDT40136.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5] gi|171992186|gb|ACB63105.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6] Length = 193 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++ALV LGY + + A Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASQSDHATDILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|295677647|ref|YP_003606171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002] gi|295437490|gb|ADG16660.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002] Length = 193 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERIVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGATSPSDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|254374431|ref|ZP_04989913.1| holliday junction DNA helicase RuvA [Francisella novicida GA99-3548] gi|151572151|gb|EDN37805.1| holliday junction DNA helicase RuvA [Francisella novicida GA99-3548] Length = 216 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGALIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|320528952|ref|ZP_08030044.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399] gi|320138582|gb|EFW30472.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399] Length = 198 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + D+ L+DV V Y ++ +T + + + G+ L++ TH+R+D I L Sbjct: 1 MIGFLRGTVVHSAVDHCLLDVHNVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L + G+G + A +LS +T + I ++ K I ++PGI K Sbjct: 60 YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKDVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D S V + + S A AL++LG+ Q++ Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAVVSDVSD-----SMLAEATEALMSLGFQQNE---- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V + + + +++R AL + Sbjct: 171 IQTVFQGKTDYQSTEELVRYALSVL 195 >gi|212690798|ref|ZP_03298926.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855] gi|237708184|ref|ZP_04538665.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA] gi|212666675|gb|EEB27247.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855] gi|229457737|gb|EEO63458.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA] Length = 197 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I + V++D G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + VN E + AISAL LG+ Q + Sbjct: 120 AQRIIVDLKDKIAT------SGVETVNSEMFANPANTEIHDEAISALTMLGFAQAASQKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK+E A ++I+LAL+ + Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197 >gi|320352803|ref|YP_004194142.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM 2032] gi|320121305|gb|ADW16851.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM 2032] Length = 208 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + ++DV GV Y + +RT L ++G C L V+T +R+D I L Sbjct: 1 MIASLSGLVQWKGPNMAILDVNGVGYELCISVRTYDALPEVGGTCFLLVQTVVREDAISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F+LL +V G+G ++A +LS I L +I ++ + +PG+ K Sbjct: 61 YGFSRKEEKDLFLLLITVSGIGPKLAQTILSGIGVEALCGAITAKDLSQLTALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL K + + + + + +A SAL+NLGY Q A A Sbjct: 121 AQRLCVELGEKVGGIGAGLAIEGT---PPLVAPAGDSQVMADAASALINLGYPQAIAWQA 177 Query: 181 VVSVLKKEKNIAD---DSQIIRLALRAIS 206 + +V ++ D ++IR ALR+++ Sbjct: 178 LRNVEQQLPPGTDAPRVEELIRQALRSLA 206 >gi|115350636|ref|YP_772475.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD] gi|122324004|sp|Q0BI82|RUVA_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115280624|gb|ABI86141.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD] Length = 193 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++ALV LGY + + A Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASQSDHAADILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|260551462|ref|ZP_05825646.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624] gi|260405456|gb|EEW98949.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624] Length = 203 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 5 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 64 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S V + S A +AL +LGY +A Sbjct: 124 AERLMIELRDRFKTLA----QGTSTVATMPQIQFAANSPVAEAEAALQSLGYKPLEAQ-- 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 178 -KAVAAVKADYTESADIIRAALKSM 201 >gi|312892324|ref|ZP_07751819.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter paludis DSM 18603] gi|311295108|gb|EFQ72282.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter paludis DSM 18603] Length = 194 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + YV+ID GV Y I + T S + + C LF H+++D L Sbjct: 1 MYAYINGKLAFKCPTYVIIDAGGVGYHINISLNTYSNISD-KESCKLFTWLHVKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L SV G+GA +LS IT E+ +II + +I +I GI K Sbjct: 60 YGFADEGERRLFLHLISVSGIGANTGRMILSSITPAEIQNAIIKGDVPLIQRIKGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K ++ + + A+SALV LG+ ++ A Sbjct: 120 AQRIVLELQDKLRKDGP----------DTLINVPVIHTAKDEALSALVMLGFAKNVGEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +K + Q+I++AL+ + Sbjct: 170 LDNAIKSTTDNLTVEQLIKIALKNL 194 >gi|124002681|ref|ZP_01687533.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134] gi|123991909|gb|EAY31296.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134] Length = 194 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + +IDV GV Y I + T + L GD C L +R+D L Sbjct: 1 MFAYISGKLAHKEPTFAVIDVHGVGYQINISLNTYTALPISGD-CKLHTWLQVREDAQNL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F+LL SV G+GA A+ +LS ++ +E+ +I ++ K I I GI +K Sbjct: 60 YGFTELAEKKLFLLLISVSGIGANTALVMLSSMSVSEIQTAIASEDVKAIKSIKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + A+ AL+ LGY ++ A Sbjct: 120 AQRVILELKDKVQKEVGSIA---------VTPATQQSAVKDEAVMALITLGYAKNVAEKN 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + K + N +I+ AL+ Sbjct: 171 VAKIFKTKGNDVKVEDVIKEALK 193 >gi|333029161|ref|ZP_08457222.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides coprosuis DSM 18011] gi|332739758|gb|EGJ70240.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides coprosuis DSM 18011] Length = 199 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + L ++D GV Y + + T S L + C L+++ +R+D +L Sbjct: 1 MIEYVKGELAELTPAQAVVDCNGVGYGVSISLNTYSAL-QGKKECKLYIQEVIREDAHQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R+ F+LL SV G+G A +LS ++ ELVE+I +N+K++ + GI K Sbjct: 60 FGFINKEERELFLLLNSVSGIGGNTARMILSALSPVELVEAIGTENTKLLQSVKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K S + V ++ S +ISAL LG+ Sbjct: 120 AERIIVDLKDKIKSTAIVENGHVTVGES----TLSDMDIYNESISALTMLGFAPAPTRKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K+ N ++++LAL+ + Sbjct: 176 VHAIFKENPNHT-IEEVVKLALKRL 199 >gi|256425896|ref|YP_003126549.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM 2588] gi|256040804|gb|ACU64348.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM 2588] Length = 195 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V IDVQGV Y + + T S + + + C L H+++D L Sbjct: 1 MIAYLNGKLSYKSPAMVHIDVQGVGYEVQISLNTYSRI-QGSESCKLLTYLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F+LL SV G+GA A +LS + ++ +I ++N K++ I GI K Sbjct: 60 YGFADDAERQMFLLLISVSGIGANTARMMLSSLQPEDIQRAIAMENEKMLESIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + Q + + +A++ALV LG ++ A A Sbjct: 120 AKRVILELKDKVKKQKDI---------GNQISVTPNNTIQEDALNALVTLGIARNVAEQA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK E + D +I+ +L+ + Sbjct: 171 INKVLKAEPLLLDLEALIKKSLKGL 195 >gi|190893294|ref|YP_001979836.1| holliday junction DNA helicase [Rhizobium etli CIAT 652] gi|229560121|sp|B3PYZ4|RUVA_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190698573|gb|ACE92658.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652] Length = 204 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 145/206 (70%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T +EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPSELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203 >gi|154252563|ref|YP_001413387.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans DS-1] gi|171769603|sp|A7HUZ7|RUVA_PARL1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154156513|gb|ABS63730.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans DS-1] Length = 205 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK++G ++ ED+ +IDV GV Y + C RTL L G TL +ET + + IRL Sbjct: 1 MIGKLRGIVDSTGEDWAVIDVGGVGYHVTCSSRTLRNLPPAGGAVTLSIETKVSDEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +D +R+WF LL +VQGVG RVA+GVL + +L +I L + K ++ PG+ K+ Sbjct: 61 IGFTTDSEREWFRLLLAVQGVGTRVALGVLGTLAPADLARAIALDDKKAVSAAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+TELK K + VN E + S+ + A +A+SALVNLGY Q QA A Sbjct: 121 AARIVTELKDKVPDSMGLSAALEVGVNGEA--VSSVSAPARDAVSALVNLGYPQAQAMGA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + K+ + A Q+IR L+ ++ Sbjct: 179 VAAAAKRLDDAASTEQLIRHGLKELA 204 >gi|330683931|gb|EGG95698.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU121] Length = 200 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V++DV GV Y I P + + +F +R+D L Sbjct: 1 MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTP-NSYRFQKYLDKEVQIFTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L V G+G + A+ +L+ T E+ ++I +N + + PGI K Sbjct: 60 YGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +N+ A+ S A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVQITEENTDTLLNVMNESNAN----ESMIKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VLK+ N+ + +++ L+ + Sbjct: 175 VEKVLKQS-NMESVDEAVKIGLQTL 198 >gi|239637553|ref|ZP_04678525.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603] gi|239596771|gb|EEQ79296.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603] Length = 200 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V++DV GV Y I P + + +F +R+D L Sbjct: 1 MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTP-NSYRFQKYLDKEVQIFTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L V G+G + A+ +L+ T E+ ++I +N + + PGI K Sbjct: 60 YGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +N A+ S A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVQITEENSDTLLNVMNDSNAN----ESMIKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VLK+ N+ + +++ L+ + Sbjct: 175 VEKVLKQS-NMDSVDEAVKIGLQTL 198 >gi|310643559|ref|YP_003948317.1| holliday junction ATP-dependent DNA helicase ruva [Paenibacillus polymyxa SC2] gi|309248509|gb|ADO58076.1| Holliday junction ATP-dependent DNA helicase ruvA [Paenibacillus polymyxa SC2] Length = 204 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ L +YV++DVQGV Y ++CP K ++ H+R+D I L Sbjct: 1 MIDFLRGSVAHLENEYVVLDVQGVGYRVFCPNP--YAFAKTEGPVVIYTHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q F L V G+G RVA+G+L T +V +I +N + ++PGI K Sbjct: 59 FGFATREEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + + E A S+ A AL LGY + Sbjct: 119 AQRMILDLKDKLDGIGAL--GMATGLFAEPAVEEGQGSYWSEAREALKALGYTDAELDKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K +++ AL+ + Sbjct: 177 WSKMKKDAKPDDSADILMKRALQLL 201 >gi|220928772|ref|YP_002505681.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum H10] gi|254766954|sp|B8I1A3|RUVA_CLOCE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219999100|gb|ACL75701.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum H10] Length = 199 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E D ++++ G+ Y I+ + T++ +G+ G ++ ++R+D L Sbjct: 1 MFAYIKGTVEEKNNDSIIVEAGGIGYRIFTALSTINNMGQNGTTVKIYTHYYVREDIAVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L +V GVG + A+ ++S ++ + +++ Q++K + + PGI MK+ Sbjct: 61 YGFGTVEELTMFEMLLTVSGVGPKAAISMISTLSPSRFYLAVVSQDTKSLTKAPGIGMKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K M+ + + S A+SAL+ LGYG +A++ Sbjct: 121 AQRIILDLKDKISKEQLTSSIPMTSPENNE---VTGDSVLSEAVSALMVLGYGSAEASST 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +K ++++ AL+++ Sbjct: 178 ISGIYEK---GISVEELVKKALKSL 199 >gi|150004217|ref|YP_001298961.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus ATCC 8482] gi|254884765|ref|ZP_05257475.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA] gi|294774978|ref|ZP_06740508.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510] gi|319644172|ref|ZP_07998697.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp. 3_1_40A] gi|166230518|sp|A6L0X5|RUVA_BACV8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149932641|gb|ABR39339.1| Holliday junction DNA helicase ruvA [Bacteroides vulgatus ATCC 8482] gi|254837558|gb|EET17867.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA] gi|294451187|gb|EFG19657.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510] gi|317384294|gb|EFV65265.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp. 3_1_40A] Length = 197 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I + V++D G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + VN E A++AL LG+ Q + Sbjct: 120 AQRIIVDLKDKIAT------SGVETVNSEMFANPGNTEIHDEAVAALTMLGFAQAASQKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK+E A ++I+LAL+ + Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197 >gi|227872463|ref|ZP_03990804.1| possible crossover junction endonuclease RuvA [Oribacterium sinus F0268] gi|227841694|gb|EEJ51983.1| possible crossover junction endonuclease RuvA [Oribacterium sinus F0268] Length = 199 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + + ED ++I+ G+ Y + P K G+ L +R+D L Sbjct: 1 MIRFIHGILREVKEDMLVIEAGGLGYGVRIPASVFDKAPKTGEEILLHTYFSVREDSQEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR +F+ L SV G+G + A+G+ S ++ EL+ +II +SK I + PG+ K Sbjct: 61 FGFWEERDRDFFIKLLSVSGIGPKTALGIFSCMSREELIHAIISNDSKKIQKAPGLGKKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +D++ +E + A+ ALV+LGY +A Sbjct: 121 AERLIVELRDKVPK------EDITFSGEEAVETTATSVAVEEAVEALVSLGYSVMEAKRW 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S+ E+ A +++R++L+ + Sbjct: 175 IRSIPAYEEKTA--EELLRISLKQFA 198 >gi|114330310|ref|YP_746532.1| Holliday junction DNA helicase RuvA [Nitrosomonas eutropha C91] gi|122314644|sp|Q0AJA4|RUVA_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114307324|gb|ABI58567.1| Holliday junction DNA helicase subunit RuvA [Nitrosomonas eutropha C91] Length = 194 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + VL+DVQG Y I P+ T L IG TL +R+D L Sbjct: 1 MIGRITGLLLEKHPPLVLVDVQGTGYEIDVPMSTFCKLPDIGKKVTLHTHFWVREDVHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+++ +R F L + G+GAR + +LS ++ T+L ++++ Q+S + +IPGI K Sbjct: 61 FGFMTEQERALFRQLTKISGIGARTGLAILSGLSVTDLHQAVVSQDSIRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ + + + N ++ + +SAL+ LGY + A Sbjct: 121 AERLLLELRDKIDPVAILSEAGAAASNVDK-----------DILSALLALGYNGREVNRA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 L++ S I +L+ +S Sbjct: 170 ----LEQLSEGVTVSDGIMQSLKFLS 191 >gi|134294766|ref|YP_001118501.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4] gi|166230530|sp|A4JBL3|RUVA_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134137923|gb|ABO53666.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4] Length = 193 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++ALV LGY + + A Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASPSDHAADILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191 >gi|323527310|ref|YP_004229463.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001] gi|323384312|gb|ADX56403.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001] Length = 193 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGVMAGAVSASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|209965101|ref|YP_002298016.1| Holliday junction DNA helicase RuvA [Rhodospirillum centenum SW] gi|226698737|sp|B6ITI5|RUVA_RHOCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209958567|gb|ACI99203.1| holliday junction DNA helicase RuvA [Rhodospirillum centenum SW] Length = 206 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ ++DV GV Y++ RTL L G+ +L E + +D I+L Sbjct: 1 MIAKLTGLLDSTGLDWAIVDVGGVGYLVSASARTLRRLAAPGEAVSLLTEMWVSEDNIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R WF LL +VQGVGARVA+ +LS ++ EL SI Q+ + Q G+ K+ Sbjct: 61 FGFADTEERDWFRLLTTVQGVGARVALNLLSALSPAELTNSIAAQDRTALCQADGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K S + + A +A+SALVNLGY + +A TA Sbjct: 121 AARILNELKEKVASFGAPAPAAATAGKGGAAPAGPA-GAVADAVSALVNLGYRRVEAFTA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V ++ A S +IR L+ +S Sbjct: 180 VNAVAQRLGPEAGVSDLIRAGLKELS 205 >gi|293609857|ref|ZP_06692159.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828309|gb|EFF86672.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123084|gb|ADY82607.1| holliday junction helicase subunit A [Acinetobacter calcoaceticus PHEA-2] Length = 199 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S V + S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKTLA----QGTSTVATMPQIQFAANSPVAEAEAALQSLGYKPLEAQ-- 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197 >gi|206561676|ref|YP_002232441.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia J2315] gi|229560010|sp|B4EES6|RUVA_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|198037718|emb|CAR53661.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315] Length = 193 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTQQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + + A Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASPSDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|323486643|ref|ZP_08091964.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14163] gi|323400024|gb|EGA92401.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14163] Length = 203 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D ++++ V IY P+ L L +G+ ++ +R+D + L Sbjct: 1 MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L V G+G + A+G+LS ++ +L +I+ ++K I++ PG+ K Sbjct: 61 YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + E+ + M A +ALV LGY +A+ A Sbjct: 121 AQRIILDLKDKVSAEEMLAS---VADTDERTSVPLMQEAGREAATALVALGYSNLEASKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V + D ++R +L+ ++ Sbjct: 178 VKNV--QITEDMDAEAVLRASLKYLA 201 >gi|307730947|ref|YP_003908171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003] gi|307585482|gb|ADN58880.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003] Length = 193 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGAVSASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191 >gi|241206204|ref|YP_002977300.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860094|gb|ACS57761.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 204 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRTAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDNADSAKLIRLGLKELA 203 >gi|330815560|ref|YP_004359265.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia gladioli BSR3] gi|327367953|gb|AEA59309.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia gladioli BSR3] Length = 193 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPHTGERVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL + + LQ+S + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKISGIGARMALAVLSGMSVQELSQVVTLQDSARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + E A S A + ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGELAGQASQSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSDGIKLSLKALS 191 >gi|327194147|gb|EGE61017.1| holliday junction DNA helicase protein [Rhizobium etli CNPAF512] Length = 204 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203 >gi|84687718|ref|ZP_01015591.1| Holliday junction DNA helicase motor protein [Maritimibacter alkaliphilus HTCC2654] gi|84664301|gb|EAQ10792.1| Holliday junction DNA helicase motor protein [Rhodobacterales bacterium HTCC2654] Length = 222 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +D+VLIDV+GV YI++ RTL+ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLSGRIDYKGDDHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTDMIVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S ++++WF LL +VQG+GA+ A +L + A + +I L + + G+ K Sbjct: 61 HGFTSLVEKEWFRLLMTVQGIGAKAATAILGTLGADGVSRAIALGDWNAVKAAKGLGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--------------QAHICSMPSFAINAISA 166 A R++ ELK KA ++ ++ ++ +A A+SA Sbjct: 121 AQRVVNELKDKAPTIMAMGAGQTVSAPEDVLVESDATPVAAAPRAAPKPANMAQPEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG +A +AV + L + ++ D +++IR AL+ ++ Sbjct: 181 LANLGYGPGEAASAVATALGDDPDL-DTAKLIRAALKLLA 219 >gi|311748060|ref|ZP_07721845.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1] gi|126575044|gb|EAZ79402.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1] Length = 199 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + YVLIDV G+ Y + ++T S + K + L H+++D L Sbjct: 1 MIDYLHGKLVFKDPTYVLIDVGGIGYHVKISLQTYSQI-KDEEQIKLLTYLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F+LL S+ GVG + +LS ++ E+ +SI+ + I + GI K Sbjct: 60 YGFKNADEKRLFLLLISINGVGPNTGLMILSSLSTEEIEQSILSGDVATIQHVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K D S + + + + + A+ AL+ LG+ + A Sbjct: 120 AQRIILELKDKVGK-----ATDSSSGDSQVGFLNAHNNLREEALKALITLGFPKTAAEKN 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + +VLKK ++I+ +L+ Sbjct: 175 IRAVLKKTTGEISLEELIKASLK 197 >gi|297181902|gb|ADI18079.1| holliday junction resolvasome, DNA-binding subunit [uncultured Acidobacteriales bacterium HF0200_23L05] Length = 198 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++D+ GV Y + P+ T LG++G L + TH+R+D + L Sbjct: 1 MIATLHGVLTEKNPSRLVVDISGVGYEVSVPLSTFYALGELGAEVDLRIHTHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+ F L ++ GVG R+A+ VLS + +L+ +I + + IPG+ K Sbjct: 61 FGFATQLEIDLFGRLIAISGVGPRLALAVLSGLEPPDLLRAIQDSDIVRLQGIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K S + N + + +SAL+NLGY + A A Sbjct: 121 AERISLELKDKLPSNVLTEGETKDFKNGTE-------QVRRDVMSALLNLGYHRPLAERA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VL + + +RLALR ++ Sbjct: 174 VKEVLT--GEVHTFEETLRLALRELA 197 >gi|285808235|gb|ADC35769.1| Holliday junction DNA helicase RuvA [uncultured bacterium 293] Length = 198 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +IDV GV Y + P+ T LG GD TL V TH+R+D I L Sbjct: 1 MIAQLTGRIARKEPQEAVIDVGGVGYRVTIPVSTFYRLGVDGDTITLRVHTHLREDTIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L +V VG ++A+ +LS I EL++++ + + +IPG+ K Sbjct: 61 FGFATASEHDLFEKLITVANVGPKLAVNILSGIETDELIQALRGGDLARLTRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + +SALV+LGY + +A A Sbjct: 121 AERLVLELKDKMPK--------PGTAAAAPDAPPDGGAEREDVLSALVHLGYSRAEAERA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ + ++R LR++S Sbjct: 173 VERATREGGSHR-FEDLLRQVLRSLS 197 >gi|17545220|ref|NP_518622.1| Holliday junction DNA helicase motor protein [Ralstonia solanacearum GMI1000] gi|20455245|sp|Q8Y235|RUVA_RALSO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|17427511|emb|CAD14029.1| probable holliday junction dna helicase ruva protein [Ralstonia solanacearum GMI1000] Length = 193 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVALLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + ++ A++ ++AL+ LGY +A A Sbjct: 121 AER-----------LLLELKGKLGADLGTVPGGPAVSDDAVDVLNALLALGYSDKEAAQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|89889458|ref|ZP_01200969.1| Holliday junction DNA helicase ruvA [Flavobacteria bacterium BBFL7] gi|89517731|gb|EAS20387.1| Holliday junction DNA helicase ruvA [Flavobacteria bacterium BBFL7] Length = 193 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V+ID GV Y + + T S + + G+ LF +R+D RL Sbjct: 1 MIAQLQGKLVEKNLTDVVIDCGGVGYFVEISLHTYSLIPE-GELIKLFTFMQVREDSQRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R+ F LL SV G+GA A +LS + ++ ++I + + I + GI K Sbjct: 60 FGFMEKSEREVFKLLLSVSGIGASTARTMLSSLEPRQIAQAIASGDVRTIQSVKGIGAKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + E + S + A+SAL LGY + QA Sbjct: 120 AQRVILDLKDKILQV----------LEGEDISLHSSNTGRDEALSALETLGYLRKQAQKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L E + A +I+ AL+ + Sbjct: 170 VDKILASEPD-ASVETLIKGALKQL 193 >gi|116253728|ref|YP_769566.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. viciae 3841] gi|122988385|sp|Q1MC53|RUVA_RHIL3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115258376|emb|CAK09479.1| putative Holliday junction DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 204 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSTGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS + EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLPPGELANAIALQDRTAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIGLKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +K AD +++IRL L+ ++ Sbjct: 178 IAAAMKTAGEGADSAKLIRLGLKELA 203 >gi|291557651|emb|CBL34768.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum V10Sc8a] Length = 199 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +ID GV Y TLS L KIG+ L +R+D + L Sbjct: 1 MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F +L SV GVG + A+ +LS +T + + K + PGI K Sbjct: 60 FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S V + + + A+SAL+ LGY +A +A Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEAASA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 L A ++IR L+ ++ Sbjct: 176 ----LSGLDPSAPSDELIRAGLKKLA 197 >gi|167750454|ref|ZP_02422581.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702] gi|167656605|gb|EDS00735.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702] Length = 199 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +ID GV Y TLS L KIG+ L +R+D + L Sbjct: 1 MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F +L SV GVG + A+ +LS +T + + K + PGI K Sbjct: 60 FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S V + + + A+SAL+ LGY +AT+A Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEATSA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 L A ++IR L+ ++ Sbjct: 176 ----LSGLDPSAPSDELIRAGLKKLA 197 >gi|94501014|ref|ZP_01307538.1| Holliday junction DNA helicase motor protein [Oceanobacter sp. RED65] gi|94426761|gb|EAT11745.1| Holliday junction DNA helicase motor protein [Oceanobacter sp. RED65] Length = 203 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +LI+V G+ Y ++ P+ T+ L ++G TL +R+D L Sbjct: 1 MIGRISGTLLEKLPPELLIEVNGLGYEVHAPMTTIYALPEVGQGVTLHTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++A+ +LS I V S+ +S + +IPGI K Sbjct: 61 YGFSDKQQRALFRALIKVSGVGPKLALAILSGIETDTFVRSVHDGDSATLVRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + V D+ + S + A AL+ LGY +A Sbjct: 121 AERLIVEMKDRLKEWQ--VDSDLPLMAAANPAPASQDQWIQEAEGALIALGYKPTEAA-- 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ ++ + +IRLAL+ + Sbjct: 177 -KAIAAIKEPVNGSEDLIRLALKGM 200 >gi|169795065|ref|YP_001712858.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AYE] gi|213158273|ref|YP_002320324.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB0057] gi|215482614|ref|YP_002324806.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB307-0294] gi|239501033|ref|ZP_04660343.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB900] gi|260556549|ref|ZP_05828767.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC 19606] gi|301344817|ref|ZP_07225558.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB056] gi|301510228|ref|ZP_07235465.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB058] gi|301595121|ref|ZP_07240129.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB059] gi|332851087|ref|ZP_08433196.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013150] gi|332869664|ref|ZP_08438852.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013113] gi|226698802|sp|A3M7W0|RUVA_ACIBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725429|sp|B7GYB6|RUVA_ACIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725430|sp|B7I5A8|RUVA_ACIB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229470533|sp|B0VDI6|RUVA_ACIBY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169147992|emb|CAM85855.1| holliday junction helicase subunit A [Acinetobacter baumannii AYE] gi|193078070|gb|ABO13004.2| holliday junction helicase subunit A [Acinetobacter baumannii ATCC 17978] gi|213057433|gb|ACJ42335.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB0057] gi|213986860|gb|ACJ57159.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB307-0294] gi|260409808|gb|EEX03108.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC 19606] gi|332730251|gb|EGJ61576.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013150] gi|332732566|gb|EGJ63799.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013113] Length = 199 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQ-- 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197 >gi|167586148|ref|ZP_02378536.1| Holliday junction DNA helicase motor protein [Burkholderia ubonensis Bu] Length = 193 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLSPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + + A Sbjct: 121 AER-----------LLLELKGKLGADLGTLAGAASPSDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|186477304|ref|YP_001858774.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815] gi|229560012|sp|B2JGU4|RUVA_BURP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|184193763|gb|ACC71728.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815] Length = 193 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++LID GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPGTGEKVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGIGARMALAVLSGMSVQELSQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + + A Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGAASQSDHASDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|94309369|ref|YP_582579.1| Holliday junction DNA helicase RuvA [Cupriavidus metallidurans CH34] gi|123384032|sp|Q1LRB6|RUVA_RALME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|93353221|gb|ABF07310.1| component of RuvABC resolvasome, regulatory subunit [Cupriavidus metallidurans CH34] Length = 193 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L IG TL + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAIGHPVTLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + GVGAR+A+ VLS ++ EL +++ +Q + + +IPGI K Sbjct: 61 FGFATATERNTFRELIKITGVGARMALAVLSGLSVPELAQAVTMQEAGRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + + A++ ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGHAPGATPLADSAVDILNALLALGYSEKEAAQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191 >gi|313677422|ref|YP_004055418.1| holliday junction DNA helicase ruva [Marivirga tractuosa DSM 4126] gi|312944120|gb|ADR23310.1| Holliday junction DNA helicase RuvA [Marivirga tractuosa DSM 4126] Length = 197 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG+I L +++I+V GV Y + P+ T K + H+++D L Sbjct: 1 MISYLKGSIIELEPTHLIIEVGGVGYHVIIPMSTYDAF-KSQKEVKVLTHFHVKEDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F+ L + G+G A+G+LS + E+ SI+ +N K I I GI K Sbjct: 60 YGFYLPEERTVFLDLIGISGIGPSTAIGMLSAMNPNEIKSSIVAENVKQIQSIKGIGGKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + Q+ S S A+SAL+NLG+ ++ A Sbjct: 120 AQRVILELKDRYKKEGLITEST-------QSSGVSNNSLRNEALSALINLGFAKNSAEKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +L+ K Q+I+ AL++ Sbjct: 173 IDKILQANKENITLEQLIKQALKS 196 >gi|260887321|ref|ZP_05898584.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] gi|330838926|ref|YP_004413506.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] gi|260862957|gb|EEX77457.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] gi|329746690|gb|AEC00047.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] Length = 201 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L D+ +DV GV Y ++ T L +G+ TLF +R+D + L Sbjct: 1 MIGFLRGKVARLSLDFCFLDVAGVGYRVFISGATHGRL-HMGEEVTLFTHLAVREDAMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + + F +L SV G+G + A+G+LS IT L ++ + + ++ + PGI K Sbjct: 60 YGFFSEEEYELFQMLISVTGIGPKAALGILSNITPENLCLAVRNKKADILTKAPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + V + + A +AL++LGY Q + Sbjct: 120 AERIILELKDKMKGF---MTEHEAIVEEGLLEEPVEDTMLAEAGAALLSLGYTQAE---- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +L++ K+ D +IR AL+ + Sbjct: 173 FTPILRRAKDCKDAEALIRFALKEFA 198 >gi|297569179|ref|YP_003690523.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus AHT2] gi|296925094|gb|ADH85904.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus AHT2] Length = 215 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 9/215 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D +++ V GV Y ++ P L +G+ L+++T +R+D L Sbjct: 1 MIASLQGKLAHKGPDSLVLQVGGVGYEVFLPASRHDRLPAVGEELFLYIQTVVREDSFNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL V GVG R+AM +L+ L +II + + ++PG+ K Sbjct: 61 YGFPDSREKRMFQLLLGVSGVGPRLAMNILAAAEPAALSRAIIAGDIVFLKKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-------NAISALVNLGYG 173 A R+ EL K + + V A S + A +A SAL+NLGY Sbjct: 121 AERLCLELGDKMEFFPTATTDAGTVVGPGAALSPSSAAAADFNEPSFQDAYSALLNLGYP 180 Query: 174 QDQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206 QA A+ + + +++R ALR+++ Sbjct: 181 ASQARAALEGLRSAADVSLELPVEELLRQALRSLA 215 >gi|253699567|ref|YP_003020756.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21] gi|259495645|sp|C6E1S9|RUVA_GEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|251774417|gb|ACT16998.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21] Length = 199 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++++DV GV Y ++ P T L G +L + T +++D I L Sbjct: 1 MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPAEGGALSLQIHTSVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL V GVG ++A G+LS +EL +S++ N ++ IPGI K Sbjct: 61 YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L Q + I + +SAL+NLGY + A Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGATAPAKQEI------RDDVLSALINLGYKEAVVQKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K A +++ AL+ + Sbjct: 175 LAEL--KVTEDATVELVLKQALKIL 197 >gi|56551051|ref|YP_161890.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ZM4] gi|81355594|sp|Q5NR75|RUVA_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56542625|gb|AAV88779.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ZM4] Length = 213 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D +IDV GV Y++ R L +I T+ +ET +R+D I L Sbjct: 1 MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S L+R WF LL SVQGVG + A+ +L+ +T + +I + +I + GI KI Sbjct: 61 FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ ELK K +++ + +++ A +F +A+SAL+NLG+ Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFMADAVSALLNLGFKPA 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 +A V ++ + A ++RLALR +S Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR-LSS 211 >gi|328957015|ref|YP_004374401.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium sp. 17-4] gi|328673339|gb|AEB29385.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium sp. 17-4] Length = 210 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y ++ K+ + T++V +R+D I L Sbjct: 7 MYEYIKGIVTFVSPAYIVLETNGIGYQLFI-ANPFRFSSKLNEEITIYVHQAVREDAITL 65 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q ++ L SV G+G + + +L+ LV++I +++ + + PG+ K Sbjct: 66 YGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDNHQGLVQAIENEDAAYLTKFPGVGKKT 125 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L+ V + + +++ + + + A+ AL LGY + Sbjct: 126 ASQIVLDLKGKLADLT-VAPLENAADYQQELVLSTNYNHVTEAMEALEALGYSAKEIKKI 184 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K D +R ALR + Sbjct: 185 EPQIRKLNKESTD--AYLREALRLL 207 >gi|260587811|ref|ZP_05853724.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583] gi|331083813|ref|ZP_08332922.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 6_1_63FAA] gi|260542076|gb|EEX22645.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583] gi|330403238|gb|EGG82798.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 6_1_63FAA] Length = 203 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I + ED V+++ + Y ++ P+ + + + GD ++ ++R+D ++L Sbjct: 1 MIAYLKGEIVEILEDRVILEAGNIGYNLFMPMAGVDGVLRTGDETKIYTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F LL V G+G + A+GVLS ++A EL +++ + K I++ PGI K Sbjct: 61 YGFLTKDDLNVFKLLLGVNGIGPKAALGVLSGLSADELRFAVLADDVKTISKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K SL V + + + A+ AL LGY A A Sbjct: 121 AQKLILELKDKM-SLQEAFDLKSEHVQESAGSLSDVSDIKKEAVEALTALGYSGADALRA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + +++ AL+ + Sbjct: 180 VKH--TEITEGMSVEDLLKQALKNM 202 >gi|313895598|ref|ZP_07829154.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137 str. F0430] gi|312975724|gb|EFR41183.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137 str. F0430] Length = 198 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + D+ L+DV V Y ++ +T + + + G+ L++ TH+R+D I L Sbjct: 1 MIGFLRGTVVHSAVDHCLLDVHDVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L + G+G + A +LS +T + I +N K I ++PGI K Sbjct: 60 YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKNVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D S V + + S A AL++LG+ Q++ Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAVVSDVSD-----SMLAEATEALMSLGFQQNE---- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V + + + +++R AL + Sbjct: 171 IQTVFQGKTDYQSTEELVRYALSVL 195 >gi|300856546|ref|YP_003781530.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436661|gb|ADK16428.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] Length = 198 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+ +DY++++ G+ Y I T++ K+G+ L+++ +R+D I L Sbjct: 1 MYEYIKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKVGENIVLYLQQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ G+GAR A+ +LS L +II ++ K + + PGI K Sbjct: 61 YGFLTKEELSMFNLLLTINGIGARAALSILSISDVNNLKYAIISEDEKNLVRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +D + + AL+ LGY + + A Sbjct: 121 AQRIILELKDKIDVGELTNSED-------DIDNINATQNTSEVLEALIALGYSEKEGNKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ K +++ +I+ AL+ + Sbjct: 174 LASIDKTKES--STEDMIKKALKFL 196 >gi|160879481|ref|YP_001558449.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans ISDg] gi|189045749|sp|A9KNV9|RUVA_CLOPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160428147|gb|ABX41710.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans ISDg] Length = 203 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 2/203 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + + E+YV++D G+ Y I+ P S L IGD +R+D + L Sbjct: 1 MLAFIQGELAEVKENYVVVDNNGMGYEIFIPHTVHSYLPAIGDKVKFHTYLQVREDGMAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL +V G+G + A+G+LS I+ +L +++ ++ K I++ PGI K Sbjct: 61 FGFLNREDLAMFKLLITVNGIGPKGAIGILSAISTDDLRFAVLAEDVKAISKAPGIGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+++ ELK K + S + AI ALV LGY A A Sbjct: 121 ASKLILELKDKFKLEDAFEATFQSNQVISTGGKGNNDGIREEAIQALVALGYSATDALKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V +V + + +++ +LR Sbjct: 181 VKAV--EITSNMTSEDVLKFSLR 201 >gi|260576656|ref|ZP_05844643.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2] gi|259021141|gb|EEW24450.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2] Length = 224 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 122/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D+VLIDV+GV YI++ RTL+ L G+ L+ E +R+D ++L Sbjct: 1 MIGKISGRIDYRGADHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+++W LL +VQGVGA+ AM +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTLLEKEWHRLLMTVQGVGAKAAMAILGTLGAEGAARAISLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISL----------------SSVVQQDMSCVNKEQAHICSMPSFAINAI 164 A R++ ELK KA + +V++ A S ++ +A+ Sbjct: 121 AQRVVLELKSKAPGVMAMGAALSARAEGNDADAVIEPLPVARKPTPAPTQSRAAYTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGYG A+ AV + AD + +IR+AL+ ++ Sbjct: 181 SALTNLGYGPVDASQAVAQAAGEAPE-ADTATLIRIALKLLA 221 >gi|145640257|ref|ZP_01795841.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae R3021] gi|145274843|gb|EDK14705.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.4-21] Length = 181 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 1/180 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAHAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 >gi|15895553|ref|NP_348902.1| Holliday junction DNA helicase RuvA [Clostridium acetobutylicum ATCC 824] gi|20455254|sp|Q97GT0|RUVA_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15025290|gb|AAK80242.1|AE007729_9 Holliday junction specific DNA helicase, subunit ruvA [Clostridium acetobutylicum ATCC 824] gi|325509702|gb|ADZ21338.1| Holliday junction DNA helicase motor protein [Clostridium acetobutylicum EA 2018] Length = 201 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DY+++D GV Y I+ T++ + K + +++ +RQD I L Sbjct: 1 MYEYIKGKYIGINKDYIIVDNNGVGYKIFTSGNTMANMPKPEEDVLIYLTQIVRQDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F L ++ GVGA+ ++ +LS T L +II + K I + PGI K Sbjct: 61 YGFLTKDELEMFNKLLTINGVGAKASLSLLSICTVNNLKYAIITGDEKTIVKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S + + S +N AL +LGY + + A Sbjct: 121 AQRIILELKDKFKSTD--ISKGNSEINNLDVDYDEHSKKLEEVRFALNSLGYSEKETDRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V K E II+ LR + Sbjct: 179 INNVDKSEG----IENIIKSCLRFL 199 >gi|255291934|dbj|BAH90422.1| Holliday junction DNA helicase RuvA [uncultured bacterium] Length = 190 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + V+ID GV Y + P+ + L +G TL +R+D L Sbjct: 1 MIGHLRGQLAARNPPEVVIDCGGVGYEVLVPMSSFYNLPALGQEVTLLTHLVVREDAQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V GVG R A+ +LS ++A EL +++ Q S + ++PGI K Sbjct: 61 YGFGSAAERATFRELIKVSGVGPRTALALLSGMSAAELAQAVSAQESGRLTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADLGPQAAPASDAQGDILQALLALGYNDREAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK S+ I+LAL+A++ Sbjct: 168 ----LKALPQDVGVSEGIKLALKALA 189 >gi|332663957|ref|YP_004446745.1| Holliday junction ATP-dependent DNA helicase ruvA [Haliscomenobacter hydrossis DSM 1100] gi|332332771|gb|AEE49872.1| Holliday junction ATP-dependent DNA helicase ruvA [Haliscomenobacter hydrossis DSM 1100] Length = 196 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++GNI Y++++ GV Y+++ + T S + K + + ++++D L Sbjct: 1 MITYLRGNITQKTPTYIVVETAGVGYLVHISLHTYSQIEK-KEEVKILTHLNIKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG A +LS ++ EL +II + +V + GI K+ Sbjct: 60 YGFAEEAERSLFRHLISVSGVGPTTAQIMLSSLSPDELRAAIIGEQEQVFRAVKGIGPKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K I S + N + A+SALV LG+ + A Sbjct: 120 AKRIILDLKDKLIKDSGDLPLTFPSQN---------NTIREEALSALVALGFQKIAVQKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + +LK ++ I + Q+I+LALR +S Sbjct: 171 LNHLLK-DQAIQNVEQLIKLALRELSA 196 >gi|194366898|ref|YP_002029508.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia R551-3] gi|229560131|sp|B4ST34|RUVA_STRM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194349702|gb|ACF52825.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia R551-3] Length = 197 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L ++G TL+ ++D + L Sbjct: 1 MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E + + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A + + +A AL LGY +A Sbjct: 121 AERMVLELRDRAAQFG-------AGGALPTGSGPAPADPLSDATVALQQLGYKPAEAARM 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A +IR AL++ Sbjct: 174 AREAFNEGDEVAI---VIRKALQS 194 >gi|154482944|ref|ZP_02025392.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC 27560] gi|149736228|gb|EDM52114.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC 27560] Length = 197 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G +E + +D V++D G+ Y I+ TL +G IG+ ++ +R+D ++L Sbjct: 1 MISYISGVVEEIEKDKVVVDNNGIGYGIFASQSTLEQIG-IGEQVKIYTYFSVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS + Q F LL V GVG + + +LS L +++ ++K I++ PGI K Sbjct: 60 YGFLSRQELQLFKLLIGVSGVGPKGGLAILSTCPGDSLSMAVLADDAKAISKAPGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK K +DM + +A+ AL LGY Q A A Sbjct: 120 AQKIIIELKDKIDI------EDMIAGETISKPMTKASGVVGDAVEALTALGYSQTMAYQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ + + D +I++ AL+ I Sbjct: 174 IKSI--ENVDGMDVEEILKKALKNI 196 >gi|184159149|ref|YP_001847488.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ACICU] gi|332875977|ref|ZP_08443763.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6014059] gi|229470530|sp|B2HWT2|RUVA_ACIBC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183210743|gb|ACC58141.1| Holliday junction resolvasome, DNA-binding subunit [Acinetobacter baumannii ACICU] gi|322509062|gb|ADX04516.1| ruvA [Acinetobacter baumannii 1656-2] gi|323519043|gb|ADX93424.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii TCDC-AB0715] gi|332735843|gb|EGJ66884.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6014059] Length = 199 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS + LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLNVELLVHTIEHDDVNTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQ-- 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197 >gi|193214311|ref|YP_001995510.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC 35110] gi|229560019|sp|B3QVA9|RUVA_CHLT3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193087788|gb|ACF13063.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC 35110] Length = 200 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G + + ++++V GV Y++ T L IG+ + ++R+D ++L Sbjct: 1 MLSYLSGTLIEKFSTEIVVEVNGVGYLLNISATTHEKLPAIGNQIKILTYLYVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ DR+ F LL ++ GVG ++A +LS ++ +L ES+I ++K + I G+ K Sbjct: 61 YGFITTEDREVFKLLIAISGVGPKLAQTILSGMSTAQLRESVIAGDTKALTAIAGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + L D+ KE A +A SAL++LG+ + A A Sbjct: 121 AERIILELKDKLVKL------DLKIDIKETAFRSDKQQVRNDAYSALISLGFTKSIAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + + + + + +IR+ALR Sbjct: 175 MRAAIAEVPDG-SVDDLIRVALR 196 >gi|218905615|ref|YP_002453449.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820] gi|218536299|gb|ACK88697.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820] Length = 541 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|206969835|ref|ZP_03230789.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134] gi|228954705|ref|ZP_04116728.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229180697|ref|ZP_04308037.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 172560W] gi|206735523|gb|EDZ52691.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134] gi|228602842|gb|EEK60323.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 172560W] gi|228805032|gb|EEM51628.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 205 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDENKGSSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---ALTTDQYIKKALSLL 200 >gi|169632720|ref|YP_001706456.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii SDF] gi|229470531|sp|B0VT90|RUVA_ACIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169151512|emb|CAP00277.1| holliday junction helicase subunit A [Acinetobacter baumannii] Length = 199 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVIREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQ-- 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197 >gi|225181939|ref|ZP_03735373.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT 1] gi|225167379|gb|EEG76196.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT 1] Length = 200 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + +D V++D QG+ + I P LS L + + LF +R+D + L Sbjct: 1 MFNYIRGTLVQKGKDTVVLDNQGIGWQISVPSTVLSGLHSLDEEVKLFTYLAVREDDLHL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F LL SV G+G + A+G+LS ++A E +++ +N K + ++PG+ K Sbjct: 61 YGFLTADDLSLFKLLISVSGIGPKAALGILSSLSAAEFHLAVMHENVKALTRVPGVGPKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +L S +A+ ALV LGY +A A Sbjct: 121 AKRLIVELKEKVAALG------TPQTVSATPQAGGTTSAYHDALEALVALGYNGSEAQAA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ + ++I+ AL + Sbjct: 175 LQTI--EDADRLSTEELIKKALAHL 197 >gi|241761371|ref|ZP_04759459.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374278|gb|EER63775.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 213 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D +IDV GV Y++ R L +I T+ +ET +R+D I L Sbjct: 1 MIARLVGFLVEKNSDSAIIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S L+R WF LL SVQGVG + A+ +L+ +T + +I + +I + GI KI Sbjct: 61 FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ ELK K +++ + +++ A +F +A+SAL+NLG+ Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 +A V ++ + A ++RLALR +S Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR-LSS 211 >gi|325299672|ref|YP_004259589.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides salanitronis DSM 18170] gi|324319225|gb|ADY37116.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides salanitronis DSM 18170] Length = 199 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + ++D GV Y I + T S + + LF+ +R+D L Sbjct: 1 MIEYIKGELAEAAPAFAVVDCNGVGYGINISLNTYSAI-QGKKEVKLFIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVPGIGGNTARMILSALSPRELCNVISTGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K S + A++ALV LG+ Q + A Sbjct: 120 AQRIIVDLKDKIASTGIEEE----ASTVSSLSHTVNTEIYEEAVAALVMLGFAQAPSQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+LK E + A ++I+LAL+ + Sbjct: 176 VASILKAEPDAA-VERVIKLALKML 199 >gi|209550796|ref|YP_002282713.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226698736|sp|B5ZP79|RUVA_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209536552|gb|ACI56487.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 204 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG + C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSADEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDDADSAKLIRLGLKELA 203 >gi|163850397|ref|YP_001638440.1| Holliday junction DNA helicase motor protein [Methylobacterium extorquens PA1] gi|218528957|ref|YP_002419773.1| Holliday junction DNA helicase RuvA [Methylobacterium chloromethanicum CM4] gi|240137474|ref|YP_002961945.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens AM1] gi|229560101|sp|A9W1B3|RUVA_METEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766970|sp|B7L255|RUVA_METC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163662002|gb|ABY29369.1| Holliday junction DNA helicase RuvA [Methylobacterium extorquens PA1] gi|218521260|gb|ACK81845.1| Holliday junction DNA helicase RuvA [Methylobacterium chloromethanicum CM4] gi|240007442|gb|ACS38668.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens AM1] Length = 208 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R+WF LLQ+VQGVG RVA+GVLS + +L +I + +A+ PG+ ++ Sbjct: 61 YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + + ++ + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTA--PQPVADAISALVNLGYAQIQASAA 178 Query: 181 VVSVLK---KEKNIADDSQIIRLALRAIS 206 + + LK +E + +IRL LR ++ Sbjct: 179 IAAALKGLGEEAGTVEAKTLIRLGLRELA 207 >gi|78065251|ref|YP_368020.1| Holliday junction DNA helicase motor protein [Burkholderia sp. 383] gi|90134649|sp|Q39JJ0|RUVA_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77965996|gb|ABB07376.1| DNA recombination protein, RuvA [Burkholderia sp. 383] Length = 193 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQNGERVVLLTQQIVREDANLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + E A S A + ++AL+ LGY + + A Sbjct: 121 AER-----------LLLELKGKLGADLGELAGAASPSDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|302035797|ref|YP_003796119.1| holliday junction DNA helicase RuvA [Candidatus Nitrospira defluvii] gi|300603861|emb|CBK40193.1| Holliday junction DNA helicase RuvA [Candidatus Nitrospira defluvii] Length = 202 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V +DV GV Y + P+ T L + TL + TH+R+D I+L Sbjct: 1 MIALLTGLMAFKAPSQVTLDVHGVGYEVLIPLSTYYSLPNQHESVTLSIHTHVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +++ F+LL + G+G ++ + VLS ++ +L +I + + + + GI K Sbjct: 61 YGFLTTAEKEAFLLLTGISGIGPKLGLSVLSTLSVRDLFSAIQAGDIEKLGTVSGIGKKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI ELK K L +Q S + +A+SALVNLGY Q A Sbjct: 121 AARIALELKDKVARLYPAGEQSTSGSGQPA------HPLYDDALSALVNLGYRQPDVKEA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + K +IR AL+ ++ Sbjct: 175 LKRIEKSGAMAQGLEGVIREALKDLA 200 >gi|197119680|ref|YP_002140107.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem] gi|226698732|sp|B5EAH2|RUVA_GEOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|197089040|gb|ACH40311.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem] Length = 199 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++++DV GV Y ++ P T L G +L + T +++D I L Sbjct: 1 MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPVEGGALSLQIHTSVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL V GVG ++A G+LS +EL +S++ N ++ IPGI K Sbjct: 61 YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L Q + I + +SAL+NLGY + A Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGTTAPAKQEI------RDDVLSALINLGYKEAVVQKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K A +++ AL+ + Sbjct: 175 LAEL--KVTEDATVELVLKQALKIL 197 >gi|319903005|ref|YP_004162733.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes P 36-108] gi|319418036|gb|ADV45147.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes P 36-108] Length = 200 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYAAV-QGKKECKLYIYEAIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S S + + + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTDSVATG---SAGDMTSLLMAANTQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+ N A Q+I+LAL+ + Sbjct: 177 VLAILKENPN-APVEQVIKLALKRL 200 >gi|218899590|ref|YP_002448001.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842] gi|228902949|ref|ZP_04067090.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 4222] gi|226725433|sp|B7IIT3|RUVA_BACC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218542616|gb|ACK95010.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842] gi|228856733|gb|EEN01252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 4222] Length = 205 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGTSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|300858594|ref|YP_003783577.1| holliday junction resolvasome helicase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|300686048|gb|ADK28970.1| Holliday junction resolvasome helicase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|302206306|gb|ADL10648.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium pseudotuberculosis C231] gi|302330863|gb|ADL21057.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium pseudotuberculosis 1002] gi|308276548|gb|ADO26447.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium pseudotuberculosis I19] Length = 203 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV Y + TLS + + G+ + +R+D L Sbjct: 1 MIVSLRGTVASIGLGSAVIECNGVGYEVLASPSTLSQM-RRGEEFFVLTTMVVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD RQ F LLQ+V G+G ++A+ S ++A +L ++I Q++K + +IPG+ ++ Sbjct: 60 YGFASDEARQMFTLLQTVSGLGPKLALAAQSVLSAVDLAQAIANQDAKTLQRIPGVGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + D + + + AL+ LG+ + A A Sbjct: 120 AERIIVDLKDKVSAF----ITDGGATPASGGSSSATSDVSAQVLEALLGLGFTEKVAEPA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + SVL + N A SQ +RLAL + Sbjct: 176 LNSVLSESPN-ATTSQALRLALSTL 199 >gi|329926780|ref|ZP_08281188.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5] gi|328938980|gb|EGG35348.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5] Length = 205 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +Y+++DVQGV Y ++CP K T+F H+R+D I L Sbjct: 1 MIDFLRGQVVHLESEYIVLDVQGVGYRVFCPNP--YAFAKTEGTVTVFTHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G RVA+G+L + +V +I +N + ++PGI K Sbjct: 59 FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ S A L LGY + Sbjct: 119 AQRMILDLKDKLEGFGN-ASMMTGLFAIQEPESDDGGSAWSEAREGLKALGYTDSELDKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +++ AL+ + Sbjct: 178 WLKIKDSGASGESVDVLMKRALQQL 202 >gi|299769122|ref|YP_003731148.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1] gi|298699210|gb|ADI89775.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1] Length = 199 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S + S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSTTTLPQIQFAANSPVAEAEAALQSLGYKPLEAQ-- 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197 >gi|30022496|ref|NP_834127.1| Holliday junction DNA helicase motor protein [Bacillus cereus ATCC 14579] gi|218234847|ref|YP_002369230.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264] gi|229048130|ref|ZP_04193701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH676] gi|33301596|sp|Q817W3|RUVA_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725434|sp|B7HE55|RUVA_BACC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29898054|gb|AAP11328.1| Holliday junction DNA helicase ruvA [Bacillus cereus ATCC 14579] gi|218162804|gb|ACK62796.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264] gi|228723233|gb|EEL74607.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH676] gi|326942202|gb|AEA18098.1| Holliday junction DNA helicase motor [Bacillus thuringiensis serovar chinensis CT-43] Length = 205 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|308070380|ref|YP_003871985.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681] gi|305859659|gb|ADM71447.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681] Length = 204 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ L +YV++DVQGV Y ++CP K +++ H+R+D I L Sbjct: 1 MIDFLRGSVAHLENEYVVLDVQGVGYRVFCPNP--YAFAKTEGPVVIYIHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q F L V G+G RVA+G+L T +V +I +N + ++PGI K Sbjct: 59 FGFATRDEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S+ + + E S+ A AL LGY + Sbjct: 119 AQRMILDLKDKLDGIGSL--GMATGLFAEPVVEEGEGSYWGEAREALKALGYTDAELDKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K +++ AL+ + Sbjct: 177 WSRMKKDAKPDESADILMKRALQLL 201 >gi|262373115|ref|ZP_06066394.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205] gi|262313140|gb|EEY94225.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205] Length = 201 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ L+ +I + + ++PG+ K Sbjct: 60 YGFSEAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +LS + + + P A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKALSQSANSTSQTTTSQIQFMSNSP--VAEAEAALQSLGYKPIEAQ-- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 176 -KAVAAVKADYTESADIIRAALKSM 199 >gi|225873651|ref|YP_002755110.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC 51196] gi|254766934|sp|C1F8Z2|RUVA_ACIC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225792770|gb|ACO32860.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC 51196] Length = 198 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +++ GV Y + + T + L G L + T + +D I L Sbjct: 1 MIAHLRGTLLSKQPGQAIVECAGVGYDVAISVPTFTALPAEGAEVRLHIHTQVSEDAIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +++ F L +V GVG ++A+ +LS ++ V ++ Q+ + +IPG+ K+ Sbjct: 61 FGFLDREEKRLFERLITVSGVGPKLAIKMLSGLSPERTVAALRAQDHASLTRIPGVGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L A + A + +SAL+NLGY + A A Sbjct: 121 AERLVVELKDKLDDL---------IAAAPAAGPVAAGPAAEDVLSALLNLGYQRPAALKA 171 Query: 181 VVSVLKKEKNIADDSQII-RLALRAI 205 + + ++K+ +D ++ R AL+ I Sbjct: 172 IETAVEKDAAAGEDFDLLFRAALKLI 197 >gi|261405408|ref|YP_003241649.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10] gi|261281871|gb|ACX63842.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10] Length = 205 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +Y+++DVQGV Y ++CP K T+F H+R+D I L Sbjct: 1 MIDFLRGQVVHLESEYIVLDVQGVGYRVFCPNP--YAFAKTEGTVTVFTHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G RVA+G+L + +V +I +N + ++PGI K Sbjct: 59 FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ S A L LGY + Sbjct: 119 AQRMILDLKDKLEGFGN-ASMMTGLFAIQEPEADDGGSAWSEAREGLKALGYTDSELDKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +++ AL+ + Sbjct: 178 WLKIKDSGASGESVDVLMKRALQQL 202 >gi|329113836|ref|ZP_08242607.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter pomorum DM001] gi|326696846|gb|EGE48516.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter pomorum DM001] Length = 203 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +IDV GV Y++ RTL+ L + L +ET +R+D I L Sbjct: 1 MIAFLCGLVIQVDLGSCVIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+WF LL SVQGVGA+VA+G+LS ++ ELV +++ + + + PG+ ++ Sbjct: 61 YGFMESAEREWFRLLTSVQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ KA + ++ A S +A+ AL LG+ + +A Sbjct: 121 AERILTELRDKAGKMPGGGSGGITI----PAMATPAGSIEADALMALAGLGFRRAEAAPV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+ +A +IR +L+ ++ Sbjct: 177 VRKVMDTHGAVATLDMVIRDSLKDLA 202 >gi|223044126|ref|ZP_03614165.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14] gi|222442520|gb|EEE48626.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14] Length = 200 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + L+ +V+++ G+ Y I P + + +F +R+D L Sbjct: 1 MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNQDVQIFTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F L V G+G + A+ +L+ + E+ +I +N + Q PGI K Sbjct: 60 YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ ++D + + + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKV----TITEEDSESLLQVDVNNNEQSQVVKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL K+ +++ + ++L L+ + Sbjct: 175 VEKVLNKQ-SVSSVDEAVKLGLQTL 198 >gi|83308729|emb|CAJ01639.1| holliday junction dna helicase, ruvA [Methylocapsa acidiphila] Length = 204 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 130/206 (63%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK++G ++ ED+V++DV GV YI++C RTL L ++G+ +L +ET MR+D +RL Sbjct: 1 MIGKLRGVVDSFGEDFVILDVNGVGYIVHCSSRTLQRLSRVGELASLAIETQMREDSLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ DR WF LLQSVQGVGA+VA+ V + A+EL +I Q+ IA+ G+ K+ Sbjct: 61 FGFSTEADRDWFKLLQSVQGVGAKVALAVQGILEASELAAAIAFQDKAAIARASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + ++ E A + P+ +AISALV LGYG+ QA A Sbjct: 121 AARIVAELKDKAPAAGG---AEVHLQAAEGASGQAAPTAVTDAISALVTLGYGRPQAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A +++IR L+ +S Sbjct: 178 VAASVAALGEGAATAELIRRGLKELS 203 >gi|168204868|ref|ZP_02630873.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str. JGS1987] gi|170663669|gb|EDT16352.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str. JGS1987] Length = 201 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+GD L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L I++ + K I + PGI K Sbjct: 61 YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYGIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + + +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKP--DELTSEEGQLIEGINDNSDYSFNINETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDKAL----SIENMIKESLKLL 199 >gi|299067939|emb|CBJ39153.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum CMR15] Length = 193 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKIALLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + + A++ ++AL+ LGY +A A Sbjct: 121 AER-----------LLLELKGKLGADLGAVPGGPVVSDDAVDVLNALLALGYSDKEAAQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|300705140|ref|YP_003746743.1| subunit A of ruvABC holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum CFBP2957] gi|299072804|emb|CBJ44159.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum CFBP2957] Length = 193 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + +M A++ ++AL+ LGY +A A Sbjct: 121 AER-----------LLLELKGKLGADLGAAPGGPAMSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|330996011|ref|ZP_08319905.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT 11841] gi|329574008|gb|EGG55586.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT 11841] Length = 200 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I L ++D GV Y + + T S L + L+V +R+D L Sbjct: 1 MIEYVKGQIAELTPATAVVDCHGVGYGLNISLNTFSAL-QGKQEAKLYVYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F+LL SV G+G A +LS +T ELV I N K++ + GI +K Sbjct: 60 YGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K +SV + + A++AL LG+ + Sbjct: 120 AQRIIVDLKDKI---ASVEIEGTASPGTSATMATGHSEILEEAVAALTMLGFPPAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++LK+E A ++I+LAL+ + Sbjct: 177 ALAILKEEPEAA-VERVIKLALKRL 200 >gi|325528762|gb|EGD05824.1| Holliday junction DNA helicase RuvA [Burkholderia sp. TJI49] Length = 193 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL + + +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQVVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++ALV LGY + + A Sbjct: 121 AER-----------LLLELKGKLGADLGALAGEASPSDHAADILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|262278158|ref|ZP_06055943.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus RUH2202] gi|262258509|gb|EEY77242.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus RUH2202] Length = 199 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S + S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSTTTLSQIQFAANSPVAEAEAALQSLGYKPLEAQ-- 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V + + + + IIR AL+++ Sbjct: 174 -KAVAAVKADYTESADIIRAALKSM 197 >gi|239817626|ref|YP_002946536.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110] gi|259495659|sp|C5CM11|RUVA_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239804203|gb|ACS21270.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110] Length = 190 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + V++D GV Y + P+ T L G+ +L +R+D L Sbjct: 1 MIGKLTGILAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG R A+G+LS ++ EL ++I Q + +IPGI K Sbjct: 61 YGFGTAEERAAFRQLIKISGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + ALV LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADIGLPAHAATDAQADILQALVALGYSDKEAALA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK A S+ I+LAL+A++ Sbjct: 168 ----LKALPKDATVSEGIKLALKALA 189 >gi|30264491|ref|NP_846868.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames] gi|42783552|ref|NP_980799.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987] gi|47566611|ref|ZP_00237433.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241] gi|47778316|ref|YP_021298.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames Ancestor'] gi|49187311|ref|YP_030563.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Sterne] gi|49481508|ref|YP_038471.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141085|ref|YP_085744.1| Holliday junction DNA helicase motor protein [Bacillus cereus E33L] gi|65321787|ref|ZP_00394746.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Bacillus anthracis str. A2012] gi|118479576|ref|YP_896727.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis str. Al Hakam] gi|165871987|ref|ZP_02216628.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488] gi|167636186|ref|ZP_02394490.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442] gi|167640739|ref|ZP_02398999.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193] gi|170688710|ref|ZP_02879915.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465] gi|170709117|ref|ZP_02899544.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389] gi|177653948|ref|ZP_02935989.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174] gi|190567070|ref|ZP_03019986.1| Holliday junction DNA helicase RuvA [Bacillus anthracis Tsiankovskii-I] gi|196034433|ref|ZP_03101842.1| Holliday junction DNA helicase RuvA [Bacillus cereus W] gi|196039270|ref|ZP_03106576.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99] gi|196044806|ref|ZP_03112040.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108] gi|206976012|ref|ZP_03236922.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97] gi|217961912|ref|YP_002340482.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187] gi|225866402|ref|YP_002751780.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102] gi|227817199|ref|YP_002817208.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC 684] gi|229141160|ref|ZP_04269701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST26] gi|229602821|ref|YP_002868707.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248] gi|254684176|ref|ZP_05148036.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CNEVA-9066] gi|254724653|ref|ZP_05186436.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A1055] gi|254736523|ref|ZP_05194229.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Western North America USA6153] gi|254741561|ref|ZP_05199248.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Kruger B] gi|254751340|ref|ZP_05203377.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Vollum] gi|254757672|ref|ZP_05209699.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Australia 94] gi|301055929|ref|YP_003794140.1| holliday junction DNA helicase motor protein [Bacillus anthracis CI] gi|33301601|sp|Q81LG8|RUVA_BACAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81394735|sp|Q6HDA5|RUVA_BACHK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81409055|sp|Q730B1|RUVA_BACC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81686087|sp|Q634C3|RUVA_BACCZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230517|sp|A0RJ27|RUVA_BACAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725435|sp|B7HQI0|RUVA_BACC7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766941|sp|C3P9A8|RUVA_BACAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766942|sp|C3L6V0|RUVA_BACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766943|sp|C1ESW5|RUVA_BACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|30259149|gb|AAP28354.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames] gi|42739481|gb|AAS43407.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987] gi|47552021|gb|AAT33773.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames Ancestor'] gi|47556641|gb|EAL14973.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241] gi|49181238|gb|AAT56614.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Sterne] gi|49333064|gb|AAT63710.1| holliday junction DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974554|gb|AAU16104.1| Holliday junction DNA helicase, subunit A [Bacillus cereus E33L] gi|118418801|gb|ABK87220.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis str. Al Hakam] gi|164712277|gb|EDR17813.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488] gi|167511311|gb|EDR86697.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193] gi|167528407|gb|EDR91175.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442] gi|170125969|gb|EDS94869.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389] gi|170667396|gb|EDT18154.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465] gi|172081003|gb|EDT66081.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174] gi|190562061|gb|EDV16030.1| Holliday junction DNA helicase RuvA [Bacillus anthracis Tsiankovskii-I] gi|195992975|gb|EDX56934.1| Holliday junction DNA helicase RuvA [Bacillus cereus W] gi|196024294|gb|EDX62967.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108] gi|196029897|gb|EDX68498.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99] gi|206745764|gb|EDZ57161.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97] gi|217066649|gb|ACJ80899.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187] gi|225789206|gb|ACO29423.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102] gi|227004034|gb|ACP13777.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC 684] gi|228642323|gb|EEK98613.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST26] gi|229267229|gb|ACQ48866.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248] gi|300378098|gb|ADK07002.1| holliday junction DNA helicase motor protein [Bacillus cereus biovar anthracis str. CI] gi|324328324|gb|ADY23584.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 205 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|291530842|emb|CBK96427.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum 70/3] Length = 199 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +ID GV Y TLS L KIG+ L +R+D + L Sbjct: 1 MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F +L SV GVG + A+ +LS +T + + K + PGI K Sbjct: 60 FGFYDAAELNCFKMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S V + + + A+SAL+ LGY +A +A Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEAASA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 L A ++IR L+ ++ Sbjct: 176 ----LSGLDPSAPSDELIRAGLKKLA 197 >gi|255281765|ref|ZP_05346320.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM 14469] gi|255267832|gb|EET61037.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM 14469] Length = 202 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + E+ +I+ G+ + +Y R L + G L+ +R+D I+L Sbjct: 1 MIAFIKGTLVEAAENVAVIENNGIGFNVYITGRDAGQLVRGGMEVLLYTYMDVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F +L V G+G + A GVL+ I+A EL +++ + K I+ PGI K Sbjct: 61 YGFLSKDDLEIFRMLLKVNGIGPKAAQGVLTAISANELRFAVLADDIKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + Q+ A + A+ ALV LGY A A Sbjct: 121 AQKLILELKDKFSLQDTFEQK---LAENTAAAAAAPNETQSEAVQALVALGYAGSDALKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V E I+R AL+ IS Sbjct: 178 VKAVHATED--MSTEDILRAALKHIS 201 >gi|254559651|ref|YP_003066746.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens DM4] gi|254266929|emb|CAX22728.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens DM4] Length = 208 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R+WF LLQ+VQGVG RVA+GVLS + +L +I + +A+ PG+ ++ Sbjct: 61 YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + + ++ + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTA--PQPVADAISALVNLGYAQIQASAA 178 Query: 181 VVSVLK---KEKNIADDSQIIRLALRAIS 206 + + LK +E + +IRL LR ++ Sbjct: 179 IAAALKGLGEEAGAVEAKTLIRLGLRELA 207 >gi|110679369|ref|YP_682376.1| Holliday junction DNA helicase RuvA [Roseobacter denitrificans OCh 114] gi|122972806|sp|Q168A3|RUVA_ROSDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|109455485|gb|ABG31690.1| Holliday junction DNA helicase RuvA, putative [Roseobacter denitrificans OCh 114] Length = 218 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 116/216 (53%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV Y+++C RTL+ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKITGRLEYRASDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + A + +I L + + G+ KI Sbjct: 61 FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----------KEQAHICSMPSFAINAISALVNL 170 A R++ +LK KA S+ + + + + PS A+SAL NL Sbjct: 121 AQRVVLDLKDKAPSVMGMSDTQATVAAQSSDAVIETRAAPSPVVQNPSAQAEALSALSNL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GY A AV + + A+ +IR AL+ ++ Sbjct: 181 GYAPGDAAAAVAQAAGELPD-AETPDLIRAALKRLA 215 >gi|187927480|ref|YP_001897967.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J] gi|309779818|ref|ZP_07674573.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA] gi|229560120|sp|B2UFL2|RUVA_RALPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187724370|gb|ACD25535.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J] gi|308921395|gb|EFP67037.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA] Length = 193 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + ++ A++ ++AL+ LGY +A A Sbjct: 121 AER-----------LLLELKGKLGADLGTVPGGPAVSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|72162493|ref|YP_290150.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX] gi|90136068|sp|Q47N42|RUVA_THEFY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71916225|gb|AAZ56127.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX] Length = 202 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +IDV GV ++C L+ L ++G+ T+ +R+D + L Sbjct: 1 MIAFLSGRVVSRGAETAVIDVGGVGMTVHCTPAALARL-RVGEEATVATALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R F LQ+ GVG R+A+ +LS T L +I +++ + ++PGI K Sbjct: 60 FGFADDDERDTFERLQTASGVGPRLALAMLSVHTPDALRRAIATEDTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK + EQ+ + ++ +S LVNLG+ +A A Sbjct: 120 AQRIVLELKGKLGEPGGD-----TAATPEQSAAAAPRNWRAQVVSGLVNLGWSTREAEAA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V + D + ++R ALR +S Sbjct: 175 ADAVAAEAGEQPDVAALLRSALRRLS 200 >gi|260753286|ref|YP_003226179.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552649|gb|ACV75595.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 213 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D +IDV GV Y++ R L +I T+ +ET +R+D I L Sbjct: 1 MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S L+R WF LL SVQGVG + A+ +L+ +T + +I + +I + GI KI Sbjct: 61 FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRSNGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ ELK K +++ + +++ A +F +A+SAL+NLG+ Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 +A V ++ + A ++RLALR +S Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALR-LSS 211 >gi|83749323|ref|ZP_00946320.1| RuvA [Ralstonia solanacearum UW551] gi|207742352|ref|YP_002258744.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum IPO1609] gi|83724001|gb|EAP71182.1| RuvA [Ralstonia solanacearum UW551] gi|206593742|emb|CAQ60669.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum IPO1609] Length = 193 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + +M ++ ++AL+ LGY +A A Sbjct: 121 AER-----------LLLELKGKLGADLGAVPGGPAMSDDTVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|107021766|ref|YP_620093.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU 1054] gi|116688712|ref|YP_834335.1| Holliday junction DNA helicase motor protein [Burkholderia cenocepacia HI2424] gi|161525864|ref|YP_001580876.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC 17616] gi|170732009|ref|YP_001763956.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia MC0-3] gi|189349415|ref|YP_001945043.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC 17616] gi|221202296|ref|ZP_03575330.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2M] gi|221209110|ref|ZP_03582104.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2] gi|221214501|ref|ZP_03587472.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1] gi|123371880|sp|Q1BZ35|RUVA_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230524|sp|A0K4L5|RUVA_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560009|sp|B1JVV4|RUVA_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560011|sp|A9AH72|RUVA_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|105891955|gb|ABF75120.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU 1054] gi|116646801|gb|ABK07442.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia HI2424] gi|160343293|gb|ABX16379.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC 17616] gi|169815251|gb|ACA89834.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia MC0-3] gi|189333437|dbj|BAG42507.1| holliday junction DNA helicase [Burkholderia multivorans ATCC 17616] gi|221165758|gb|EED98233.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1] gi|221171014|gb|EEE03467.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2] gi|221177870|gb|EEE10283.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2M] Length = 193 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + + A Sbjct: 121 AER-----------LLLELKGKLGADLGALAGAASASDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|19552871|ref|NP_600873.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum ATCC 13032] gi|62390542|ref|YP_225944.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum ATCC 13032] gi|20455261|sp|Q9AE10|RUVA_CORGL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13346823|gb|AAK19839.1|AF331924_4 Holliday junction DNA-helicase RuvA [Corynebacterium glutamicum] gi|21324430|dbj|BAB99054.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium glutamicum ATCC 13032] gi|41325880|emb|CAF20043.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium glutamicum ATCC 13032] Length = 206 Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV Y + TLS L + G+ + +R+D ++L Sbjct: 1 MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + R+ F +LQ+V G+G R+A+ S ++ E+ ++I ++K + ++PG+ ++ Sbjct: 60 YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKTLQRVPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + ++ V + + ALV LG+ + Q+ A Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEGGEQISLPNANIASEVVVEQVSQALVGLGFSEKQSDDA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VL + ++ D S +R AL +S Sbjct: 180 VSFVLAADPSL-DTSGALRAALAKLS 204 >gi|168181761|ref|ZP_02616425.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf] gi|237796527|ref|YP_002864079.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str. 657] gi|259495636|sp|C3KTD3|RUVA_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|182675197|gb|EDT87158.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf] gi|229263209|gb|ACQ54242.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str. 657] Length = 197 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ A+ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + D +NK + + A++AL+ LGY + +A Sbjct: 121 AQRIILELKDKI-EIDILEEDDEQTINK-----VTDDKKVLEAVAALITLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S K QII+ AL+ + Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195 >gi|291280036|ref|YP_003496871.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans SSM1] gi|290754738|dbj|BAI81115.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans SSM1] Length = 191 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + ++++++ G+ Y I + T S L + G +FV+ +++D I L Sbjct: 1 MINYINGKLVFKKPEFIVLETFGIGYHINISLNTFSKLPEEGANLKIFVQQIVKEDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++F LL V VG ++A+ +LS EL E I+ +N +A IPGI K Sbjct: 61 YGFFDEAEKEFFNLLIKVSKVGPKLALSILSGFNVDELKECIVSKNHIKLASIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ V + + +SAL+NLGY + + Sbjct: 121 AERIVLELKDKLDNVEVVSED-------------GDVQILEDVVSALINLGYKKQECLKV 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + ++ + + I++ AL+ ++ Sbjct: 168 IKNI---DISKLRFEDILKEALKKLTS 191 >gi|74318231|ref|YP_315971.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC 25259] gi|90146182|sp|Q3SGT1|RUVA_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|74057726|gb|AAZ98166.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC 25259] Length = 191 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + VL+DV GVCY I P+ T L IG+ L +R+D L Sbjct: 1 MIGRITGTLAAKQPPQVLVDVNGVCYEIDVPMSTFYNLPGIGEKVALLTHLAIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+++R F L V G+GA+ A+ VLS ++ +L +I Q I ++PGI K Sbjct: 61 YGFGSEVERAAFRELLKVSGIGAKTALSVLSGLSVNDLSAAIAAQEIGRIVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK V + + AL+ LGY + + Sbjct: 121 AERLLLELKGK-------------PVFAGALASVPSAGASDDVRQALLALGYNERETAAT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + IR ALRA+S Sbjct: 168 VREL----PAGLAVGEAIRQALRALS 189 >gi|207727946|ref|YP_002256340.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum MolK2] gi|206591189|emb|CAQ56801.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum MolK2] Length = 193 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + +M A++ ++AL+ LGY +A A Sbjct: 121 AER-----------LLLELKGKLGADLGAVPGGPAMSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|163942171|ref|YP_001647055.1| Holliday junction DNA helicase motor protein [Bacillus weihenstephanensis KBAB4] gi|229560002|sp|A9VIP7|RUVA_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163864368|gb|ABY45427.1| Holliday junction DNA helicase RuvA [Bacillus weihenstephanensis KBAB4] Length = 205 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|241662010|ref|YP_002980370.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D] gi|240864037|gb|ACS61698.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D] Length = 193 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + ++ A++ ++AL+ LGY +A A Sbjct: 121 AER-----------LLLELKGKLGADLGAVPGGPAVSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|323692211|ref|ZP_08106454.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14673] gi|323503785|gb|EGB19604.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14673] Length = 203 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D ++++ V IY P+ L L +G+ ++ +R+D + L Sbjct: 1 MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L V G+G + A+G+LS ++ +L +I+ ++K I++ PG+ K Sbjct: 61 YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + +E+ + M A +ALV LGY +A+ A Sbjct: 121 AQRIILDLKEKVSAEEMLAS---VADTEERTSVPLMQEAGREAATALVALGYSNLEASKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V + D ++R +L+ ++ Sbjct: 178 VKNV--QITEDMDAEAVLRASLKYLA 201 >gi|145295781|ref|YP_001138602.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum R] gi|166230545|sp|A4QEN4|RUVA_CORGB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|140845701|dbj|BAF54700.1| hypothetical protein [Corynebacterium glutamicum R] Length = 206 Score = 220 bits (561), Expect = 9e-56, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV Y + TLS L + G+ + +R+D ++L Sbjct: 1 MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + R+ F +LQ+V G+G R+A+ S ++ E+ ++I ++K + ++PG+ ++ Sbjct: 60 YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKALQRVPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + ++ V + + ALV LG+ + Q+ A Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEAGEQISLPNANIASEVVVEQVSQALVGLGFSEKQSDDA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VL + ++ D S +R AL +S Sbjct: 180 VSFVLAADPSL-DTSGALRAALAKLS 204 >gi|198277641|ref|ZP_03210172.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135] gi|198269338|gb|EDY93608.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135] Length = 198 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +V+++ G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGELVDATPAWVVVECNGLGYGINVSLNTYSAV-QGKKEVKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFATRQERELFLLLISVSGIGGNTARMILSALSPSELCNVIGSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V S + + + A++AL LG+ Q + Sbjct: 120 AQRIIVELKDKI-----AVTGIESAATVKSVAVAANTEIYEEAVAALTMLGFAQAPSQKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +LK+E + A ++I+LAL+ + Sbjct: 175 TAQILKEEPD-APVEKVIKLALKRL 198 >gi|209517513|ref|ZP_03266353.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160] gi|209502046|gb|EEA02062.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160] Length = 193 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSSGERIVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGAMAGAASASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|332878042|ref|ZP_08445772.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684004|gb|EGJ56871.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 200 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I L +ID GV Y + + T S L + L+V +R+D L Sbjct: 1 MIEYVKGQIAELTPAIAVIDCHGVGYGLNISLNTFSAL-QGKQEAKLYVYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F+LL SV G+G A +LS +T ELV I N K++ + GI +K Sbjct: 60 YGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K +SV + + A++AL LG+ + Sbjct: 120 AQRIIVDLKDKI---ASVEIEGTAAPGTSATAATGHSEILEEAVAALTMLGFPPAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++LK+E A ++I+LAL+ + Sbjct: 177 ALAILKEEPEAA-VERVIKLALKRL 200 >gi|148381022|ref|YP_001255563.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. ATCC 3502] gi|153931785|ref|YP_001385393.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. ATCC 19397] gi|153936604|ref|YP_001388800.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. Hall] gi|166230541|sp|A7FY20|RUVA_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230542|sp|A5I6F2|RUVA_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148290506|emb|CAL84634.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927829|gb|ABS33329.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. ATCC 19397] gi|152932518|gb|ABS38017.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. Hall] Length = 197 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ A+ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + D +NK + + A++ALV LGY + +A Sbjct: 121 AQRIILELKDKI-EIDILEEDDEQIINK-----VADDKKVLEAVAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S K QII+ AL+ + Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195 >gi|89099000|ref|ZP_01171880.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL B-14911] gi|89086404|gb|EAR65525.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL B-14911] Length = 203 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E + +Y++++ G+ Y I P S K G +F ++R+D L Sbjct: 1 MFEYIKGTVEFIGPEYIVVENNGLGYQISTP-NPFSYSNKQGGEIQIFTYHYVREDIFAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F L +V G+G + A+ +L+ ++V++I ++ + + PG+ K Sbjct: 60 YGFHSREEKMLFTKLLNVSGIGPKGALAILASGEPAQVVQAIEDEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++ + + + AI AL LGY + + Sbjct: 120 ARQMILDLKGKLQEAIPDFFPNLFNPDAARPAATGSAALLEEAILALRALGYSEKEVKR- 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L+KEK D + I+ L+ + Sbjct: 179 IKPALEKEKLTTD--EYIKKGLQLL 201 >gi|225018933|ref|ZP_03708125.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum DSM 5476] gi|224948277|gb|EEG29486.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum DSM 5476] Length = 202 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 13/211 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI I+G +E L +ID G+ Y I + T S L K G L+ ++R+D Sbjct: 1 MIYSIQGELELLTPADNHFLAVIDCGGIGYEIRTTMTTASQL-KQGGKAKLYTYLNVRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + LFGF +R F +L SV GVG + A+ +LS +T ++ + +SK + + GI Sbjct: 60 AVELFGFFDTEERNCFKMLISVSGVGPKAALSILSNVTPSQFALCVASGDSKSLTRAKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 KIA RI+ ELK K S Q + + S A+SALV LGY + Sbjct: 120 GAKIAQRIVLELKDKI----SNEQLAGGVTDSGSVALPSGSGNTAEAVSALVVLGYNKTD 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 A A+ S ++I+ L+A++ Sbjct: 176 AVQALSS----YPADTPVEELIKAGLKALAS 202 >gi|229543702|ref|ZP_04432762.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1] gi|229328122|gb|EEN93797.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1] Length = 200 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I+ + DY++++ G+ Y + P IG +F H+R+D I L Sbjct: 1 MYEYIKGIIDSVSPDYIVVENGGIGYRLLAP-NPYIFSKSIGQERKIFTYQHVREDLIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G + A+ +L+ ++V++I +N + + PG+ K Sbjct: 60 YGFETAEERALFQKLLNVSGIGPKGALAILAYGQPQQVVDAIENENESFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L + + E+A S A+ AL LGY + + Sbjct: 120 ARQMILDLKGKLQGLVPEMPDEAGV---EKAVPASTNQNLEEAMLALAALGYSEKEIAKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ + + I+LAL+A+ Sbjct: 177 VPELPEE---VLSADEYIKLALKAM 198 >gi|238026246|ref|YP_002910477.1| Holliday junction DNA helicase RuvA [Burkholderia glumae BGR1] gi|237875440|gb|ACR27773.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia glumae BGR1] Length = 193 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPPTGERVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL + + +Q++ + ++PGI K Sbjct: 61 YGFLTPQERSAFRELLKITGIGARMALAVLSGMSVQELSQVVTIQDAARLQRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + E A S A + ++AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGELAGQASQSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|163733514|ref|ZP_02140957.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis Och 149] gi|161393302|gb|EDQ17628.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis Och 149] Length = 218 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 117/216 (54%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV Y+++C RTL+ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKITGRLEYRTTDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + A + +I L + + G+ KI Sbjct: 61 FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120 Query: 121 ASRIMTELKGKAISL----------SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 A R++ +LK KA S+ S+ + A + PS A+SAL NL Sbjct: 121 AQRVVLDLKDKAPSVMGMRDTQAIASADATDTVIETTATPAPVLQNPSAQAEALSALSNL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GYG A AV + A+ +IR AL+ ++ Sbjct: 181 GYGPGDAAGAVAEAAGEMPE-AETPDLIRAALKRLA 215 >gi|114771193|ref|ZP_01448613.1| Holliday junction DNA helicase motor protein [alpha proteobacterium HTCC2255] gi|114548118|gb|EAU51005.1| Holliday junction DNA helicase motor protein [alpha proteobacterium HTCC2255] Length = 225 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G ++ D+VL+DVQGV Y++YC RTLS L G L+ + +R+D ++L Sbjct: 1 MIGKITGRVDYRGTDHVLVDVQGVGYMVYCSERTLSGLPSRGGIVALYTDLLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + D++W LL +VQGVGA+ A+ + S + + ++I L + I GI KI Sbjct: 61 FGFTTLADKEWHKLLTTVQGVGAKAALAIASTLGTDGVSKAIALGDVNAIKSAQGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC----------------SMPSFAINAI 164 A R++TELK KA + ++ + + V +++ + S S +A+ Sbjct: 121 AQRVITELKDKAPKIMAMGGEGSAVVEADESMVIDVQTPVDTPVKNQNRKSEASAQADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL+NLGY A A+ V + + +II+ AL+ ++ Sbjct: 181 SALINLGYAHGDAAGAIAQVTSEIPSSIST-EIIKAALKLLA 221 >gi|77919931|ref|YP_357746.1| Holliday junction DNA helicase RuvA [Pelobacter carbinolicus DSM 2380] gi|90135490|sp|Q3A231|RUVA_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77546014|gb|ABA89576.1| Holliday junction DNA helicase subunit RuvA [Pelobacter carbinolicus DSM 2380] Length = 197 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V++DV GV Y + P+ T L GD L V TH+R+D + L Sbjct: 1 MIALLNGQLIEKTVSQVILDVGGVGYRLLIPLSTYYALPDEGD-VRLRVHTHVREDALLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL++ ++ F LL SV GVG +VA+ +LS + A +L +++ N+K +A +PGI K Sbjct: 60 FGFLTETEKDLFGLLLSVSGVGPKVALNILSHLPAADLQQALSQGNAKHLATVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + +V + +A+SALVNLGY ++ + A Sbjct: 120 AERLVLELREKVGPVQAVP-------GNAPLPAETAGDLREDALSALVNLGYKENLSRKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A I++ AL+ + Sbjct: 173 LDGIDTA--PDAPLEDILKQALKLL 195 >gi|322807372|emb|CBZ04946.1| holliday junction DNA helicase RuvA [Clostridium botulinum H04402 065] Length = 197 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ ++ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + D +NK + + A++ALV LGY + +A Sbjct: 121 AQRIILELKDKI-EIDVLEENDEQTINK-----VTDDKKVLEAVAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S K QII+ AL+ + Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195 >gi|295084896|emb|CBK66419.1| Holliday junction DNA helicase subunit RuvA [Bacteroides xylanisolvens XB1A] Length = 200 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++S S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGSSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|237714009|ref|ZP_04544490.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1] gi|262407061|ref|ZP_06083610.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22] gi|294644868|ref|ZP_06722608.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a] gi|294809795|ref|ZP_06768479.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD CC 1b] gi|229445833|gb|EEO51624.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1] gi|262355764|gb|EEZ04855.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22] gi|292639806|gb|EFF58084.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a] gi|294443035|gb|EFG11818.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD CC 1b] Length = 200 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++S S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|187778348|ref|ZP_02994821.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC 15579] gi|187771973|gb|EDU35775.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC 15579] Length = 197 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ ++ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V D +NK + + AI+ALV LGY + +A Sbjct: 121 AQRIILELKDKI-EIDIVEDDDEEIINK-----ITDDKKVLEAIAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K QII+ AL+ + Sbjct: 175 INQCDKDN----SLEQIIKEALKYL 195 >gi|189468525|ref|ZP_03017310.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM 17393] gi|189436789|gb|EDV05774.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM 17393] Length = 201 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + + + + AI+AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTGTASAGSTIGSLGGMLS--AANAQVQEEAIAALTMLGFAQAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK E + A Q+I+LAL+ + Sbjct: 178 VLAILKDEPD-APVEQVIKLALKRL 201 >gi|163796368|ref|ZP_02190329.1| elongation factor P [alpha proteobacterium BAL199] gi|159178510|gb|EDP63052.1| elongation factor P [alpha proteobacterium BAL199] Length = 208 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 120/208 (57%), Gaps = 1/208 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ + +IDV GV Y+++ RTL+ LG+ G ++ V+TH+R+D I L Sbjct: 1 MIAKLKGLLDSTGDGMAVIDVGGVGYLVFASARTLTALGEPGSAVSVLVDTHVREDHIHL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F +LQ+VQGVGA+ A+ +LS ++ ++ +I Q+ ++ + G+ K+ Sbjct: 61 YGFASAAERSCFRMLQTVQGVGAKHALSILSVLSPEDVFTAIAAQDRVMLTRADGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179 RI+ ELK K ++++ + D + + A +A+SAL NLGYG+ +A Sbjct: 121 GQRIVNELKDKTVNVALGLGADATGPARAAAVAGQPGDDTVADAVSALSNLGYGRAEAYG 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AV + + ++I LAL+ ++ Sbjct: 181 AVSTARQALGEGVALDKLITLALKELAA 208 >gi|94677012|ref|YP_588762.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123081488|sp|Q1LTF2|RUVA_BAUCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94220162|gb|ABF14321.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 196 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I +L+++ G+ Y I P+ S L IG L+ +R+D L Sbjct: 1 MIGRLRGIILEKQPPLLLLEINGIGYEIAIPMNNFSLLPAIGQETILYTHCIVREDTELL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ D F L + GVG ++A+ +L+ ++ + + +I ++ ++PG+ K Sbjct: 61 FGFIKKPDMILFRALIKINGVGPKLALAILAGMSEKQFLSAIEHNEIHMLTKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K K S + + + I AI+AL++LGY +A+ Sbjct: 121 AERLVIEMKDKLKGTSKSLFSLATIGE-------GLAKTEIEAITALISLGYTHQEASKM 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V + A+ +IR ALR Sbjct: 174 VKKVAIE---GANCETLIRDALR 193 >gi|86359072|ref|YP_470964.1| Holliday junction DNA helicase motor protein [Rhizobium etli CFN 42] gi|123751944|sp|Q2K4J9|RUVA_RHIEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|86283174|gb|ABC92237.1| holliday junction DNA helicase protein [Rhizobium etli CFN 42] Length = 204 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 143/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DVQGVCY+ YC RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K + + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGEGADSAKLIRLGLKELA 203 >gi|218128788|ref|ZP_03457592.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697] gi|317475376|ref|ZP_07934640.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii 1_2_48FAA] gi|217989016|gb|EEC55332.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697] gi|316908404|gb|EFV30094.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii 1_2_48FAA] Length = 198 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPANAIIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F+LL SV G+G A +LS ++ +EL+ +I N+ ++ + GI +K Sbjct: 60 YGFIDKQERELFLLLISVSGIGGNTARMILSALSPSELINAISTGNANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + A + AI+AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIK-----PGGIAAGTTDISAFTAANAQVQEEAIAALTMLGFAQAPSQKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK++ A Q+I+LAL+ + Sbjct: 175 VMAILKEDAG-APVEQVIKLALKRL 198 >gi|224025806|ref|ZP_03644172.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM 18228] gi|224019042|gb|EEF77040.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM 18228] Length = 198 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +I+ G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGEVIEVVPAQAVIECNGIGYAISISLNTFSAI-QGKKEVKLYIYEAIREDAHIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL +V G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFYTRQERELFLLLITVSGIGGNTARMILSALSPSELCNVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K S ++ V + A++AL LG+ Q + Sbjct: 120 AQRIIVDLKDKIASTGIDTAAPVTSVI-----ASANTEVYEEAVAALTMLGFAQAPSQKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+E ++ ++I+LAL+ + Sbjct: 175 VGLLLKEEPDLP-VEKVIKLALKRL 198 >gi|331697370|ref|YP_004333609.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia dioxanivorans CB1190] gi|326952059|gb|AEA25756.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia dioxanivorans CB1190] Length = 199 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +++V GV + ++ TL L + G L +R+D + L Sbjct: 1 MISSVRGEVLSVGLDHAVVEVGGVGFAVFATPATLGGL-RRGQEARLETLLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LLQ+V GVG R+A+ L+ + L ++ ++ + +IPG+ K Sbjct: 60 YGFADAEERELFVLLQTVSGVGPRLALATLAVLDPQSLRRALADGDTATLTRIPGVGRKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ + V+ D+ + AH + ALV LG+ A A Sbjct: 120 AERLVVELRDKVVAPAPVLAGDVRPLVTGNAH-------RDQVVEALVGLGFTARPAEAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L + + A+ + ++R AL + Sbjct: 173 VDGILAGDPD-AEPAALLRSALATL 196 >gi|153938510|ref|YP_001392349.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str. Langeland] gi|168179565|ref|ZP_02614229.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC 2916] gi|170754638|ref|YP_001782706.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str. Okra] gi|226950500|ref|YP_002805591.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str. Kyoto] gi|166230543|sp|A7GHT9|RUVA_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560023|sp|B1IMF4|RUVA_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766953|sp|C1FKG2|RUVA_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152934406|gb|ABS39904.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str. Langeland] gi|169119850|gb|ACA43686.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str. Okra] gi|182669614|gb|EDT81590.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC 2916] gi|226841819|gb|ACO84485.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str. Kyoto] gi|295320341|gb|ADG00719.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str. 230613] Length = 197 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ ++ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + D +NK + + A++ALV LGY + +A Sbjct: 121 AQRIILELKDKI-EIDILEEDDEQIINK-----VTDDKKVLEAVAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S K QII+ AL+ + Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195 >gi|319651695|ref|ZP_08005822.1| Holliday junction DNA helicase motor protein [Bacillus sp. 2_A_57_CT2] gi|317396762|gb|EFV77473.1| Holliday junction DNA helicase motor protein [Bacillus sp. 2_A_57_CT2] Length = 203 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 94/193 (48%), Gaps = 3/193 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G ++ + +YV+I+ G+ Y I P S + G ++ ++R+D + L Sbjct: 1 MYEFVRGKLDFIGPEYVVIENNGIGYQILTP-NPFSYTPEFGQEVRIYTYHYVREDIMAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++V++I ++ + + PG+ K Sbjct: 60 YGFQTREEKTLFTKLLNVTGIGPKGALAILASGEPEQVVQAIENEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + ++ +K QA A+ AL LGY + Sbjct: 120 ARQMILDLKGKLPDIVPDFFPNLFSADKLQAESGPSGDL-EEALLALKALGYSDKE-LKK 177 Query: 181 VVSVLKKEKNIAD 193 + L+KEK D Sbjct: 178 ITPELRKEKLTTD 190 >gi|319795920|ref|YP_004157560.1| holliday junction DNA helicase ruva [Variovorax paradoxus EPS] gi|315598383|gb|ADU39449.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus EPS] Length = 190 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + V++D GV Y + P+ T L G+ +L +R+D L Sbjct: 1 MIGKLTGVLAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG R A+G+LS ++ EL ++I Q + +IPGI K Sbjct: 61 YGFGTAEERAAFRQLIKITGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADIGLPTHAASDAQADILQALIALGYSDKEAALA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK A S+ I+LAL+A++ Sbjct: 168 ----LKALPKDATVSEGIKLALKALA 189 >gi|114570973|ref|YP_757653.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10] gi|122315334|sp|Q0ALX8|RUVA_MARMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114341435|gb|ABI66715.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10] Length = 213 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 116/214 (54%), Gaps = 8/214 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L D +++DV GV Y++ RTLS L + L +ETH+R+D +L Sbjct: 1 MIGMLTGRVAALGADELVLDVSGVGYLVGAGARTLSRL-EPDQDIVLHIETHVREDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL D+DR WF+ LQ++QGVGA+ A +L + +E+ + L + A+ G+ K+ Sbjct: 60 YGFLDDIDRAWFVHLQNIQGVGAKAAFAILDTVPVSEIANAAALGDKSTFARAKGVGPKL 119 Query: 121 ASRIMTELKGKAISLS-------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A+RI TELK KA V D + A +A+SALVNLGY Sbjct: 120 ATRIATELKDKAPPTGRSFSIGLPVHSDDGTTGGAPVAPAGGDSLAREDAVSALVNLGYN 179 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 + QA AV +L+ + A +IRL+L+ ++ Sbjct: 180 ESQARQAVAKILRDADSEAPLGDVIRLSLKELAA 213 >gi|302550160|ref|ZP_07302502.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes DSM 40736] gi|302467778|gb|EFL30871.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes DSM 40736] Length = 201 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RMGQPAKLHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSNGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSVLKKEKNIADDS---QIIRLALRAIS 206 V +V + + + Q+++ AL+ ++ Sbjct: 170 VAAVTPQAEAVEGTPQVGQLLKAALQTLN 198 >gi|221141089|ref|ZP_03565582.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751470|gb|ADL65647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 200 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + S + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYSFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196 >gi|114327763|ref|YP_744920.1| Holliday junction DNA helicase RuvA [Granulibacter bethesdensis CGDNIH1] gi|114315937|gb|ABI61997.1| holliday junction DNA helicase ruvA [Granulibacter bethesdensis CGDNIH1] Length = 204 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 117/206 (56%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++GL ED LIDV GV Y++Y RTL+ L + + + +ET +R+D I L Sbjct: 1 MIGRLTGLVDGLEEDRCLIDVNGVGYVVYASSRTLAALPRAPEVARVLIETQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R WF LL +VQGVGA+V + +LS ++A +L+ +++ + + + + G+ ++ Sbjct: 61 FGFIDTAERDWFRLLTTVQGVGAKVGLNILSALSAGDLISALMAGDQRALTRASGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI++ELK K ++ + + +SAL+NLGY + +A A Sbjct: 121 AARIVSELKDKVGAM----PSGPMTIGGVGVLSAPAGGVEQDTLSALLNLGYRRPEALAA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V + A I+R LR ++ Sbjct: 177 IRRVREALGEEAGLDAILRQCLRELA 202 >gi|237748980|ref|ZP_04579460.1| RuvA protein [Oxalobacter formigenes OXCC13] gi|229380342|gb|EEO30433.1| RuvA protein [Oxalobacter formigenes OXCC13] Length = 193 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+D QGV Y I P+ T L +G+ TLF +R+D L Sbjct: 1 MIGRIQGILLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGEKVTLFTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVGAR A+ +LS ++ ++ +++ LQ++ + IPGI K Sbjct: 61 YGFGSLDERALFRQLIRISGVGARTALALLSGLSVNDMSQAVALQDASRLTSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + + +AL+ LGY + + A Sbjct: 121 AER-----------LLLELKGKLETGALSAISSSVQNDAMADIQNALLALGYSEKETILA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V N S I++AL+A+S Sbjct: 170 IKQV----PNDCSVSDGIKMALKALS 191 >gi|188586412|ref|YP_001917957.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus JW/NM-WN-LF] gi|229560108|sp|B2A5L5|RUVA_NATTJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|179351099|gb|ACB85369.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 214 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 6/213 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + + DY ++ G+ Y IY P + G L +R+D + L Sbjct: 1 MITRIRGEMLEITPDYCVVMAGGLGYKIYIPDNCQEEIPDPGQEIDLHTYLSVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S F L+ +V G+G ++A+ ++ I TE S++ + ++PGI K Sbjct: 61 YGFTSGEQLAVFELIMNVSGIGPKIALALVGTIPPTEFYLSVLNDQVNQLTKVPGIGKKS 120 Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNK-----EQAHICSMPSFAINAISALVNLGYGQ 174 A RI+ ELK K ++S QD+S K E+ I + +AL +LGY Sbjct: 121 AQRIILELKEKVKDITSKDAYQDISASEKLDNTGEKLGISTRHKHLDELKAALSSLGYTN 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 + V ++ + D +++RLAL+ ++ Sbjct: 181 REIEKTVDAIQGQITEGQDMEELLRLALQKLNT 213 >gi|163790795|ref|ZP_02185221.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7] gi|159873975|gb|EDP68053.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7] Length = 204 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y ++ K+ T++V +R+D I L Sbjct: 1 MFEYIKGIVTFVSPAYIVLENSGIGYQLFI-ANPFRFSSKLNAEATIYVHQAVREDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q ++ L SV G+G + + +L+ LV++I +++ + + PG+ K Sbjct: 60 YGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDDHQGLVQAIENEDAAYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK LS + Q + + +++ + + S A+ AL LGY + Sbjct: 120 ASQIVLDLKGKLADLS-LTQAESTTDYQQELVLSTNYSHVTEAVEALEALGYSAKEIKKI 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K D +R ALR + Sbjct: 179 EPQIRKLNKESTD--AYLREALRLL 201 >gi|296117349|ref|ZP_06835939.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii ATCC 23769] gi|295976115|gb|EFG82903.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii ATCC 23769] Length = 204 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + D +IDV GV Y++ RTLS L + + + +ET +R+D I L Sbjct: 1 MIAQLTGLVGQVEADRCVIDVGGVGYLVLASTRTLSALPQGPEVARVLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R WF LL +VQGVGA+VA+ +LS + A+EL+ +I + + + G+ ++ Sbjct: 61 YGFIDAAERSWFRLLTTVQGVGAKVALAILSTLPASELIAAIASGDKSGLTRAAGVGARL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ K + V + +A+ AL LG+ + +A Sbjct: 121 AQRIVTELRDKC---DGMPGGGAPGVVMAGVKVTGNGGVMSDALLALSGLGFRRAEAQPV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+ + D IIR +L+ ++ Sbjct: 178 VARVMDRLDGGGDLDVIIRESLKELA 203 >gi|172040615|ref|YP_001800329.1| Holliday junction DNA helicase RuvA [Corynebacterium urealyticum DSM 7109] gi|229560025|sp|B1VDJ7|RUVA_CORU7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171851919|emb|CAQ04895.1| ruvA [Corynebacterium urealyticum DSM 7109] Length = 206 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ DYV+I+ GV Y TL+ L + G+ + +R D L Sbjct: 1 MISSLRGDVIDKGLDYVVIECGGVGYRCLATGDTLATL-RRGESAFVLTSLVIRDDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F + R+ F +LQ V GVGAR+AMGV+S + ++ ++ + K + Q PG+ ++ Sbjct: 60 YAFSTSEQRETFGILQKVSGVGARLAMGVMSVLQPADIARAVEEGDIKTLQQAPGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ +LKGK +L + Q + A + + + ALV LG+ + +A TA Sbjct: 120 AERMAVDLKGKFPALEATSGQ---ATIGDIAATGNDTALQSQVVEALVGLGFTEAKAATA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +L+++ D S ++R AL+ +S Sbjct: 177 VKKILEEQNGTTDPSSVLREALQRLS 202 >gi|150026160|ref|YP_001296986.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum JIP02/86] gi|166230550|sp|A6H1G0|RUVA_FLAPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149772701|emb|CAL44184.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum JIP02/86] Length = 193 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + V+ID GV Y + + T L DF LF +++D L Sbjct: 1 MIAHIQGKLVEKSPTEVVIDCNGVGYHVNISLHTYGLLPTT-DFVKLFTHLIIKEDSHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL SV G+GA +A +LS I +++ +I + I I GI +K Sbjct: 60 YGFAEKSEKEIFKLLISVSGIGANIARTMLSSIEPKQIINAIGSGDVGTIQSIKGIGVKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + +LK K + L + +Q I + A+SAL LG+ + A Sbjct: 120 AQRTIIDLKEKVLKLYDL----------DQVSISQSNTNKDEALSALEVLGFIRKSAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + A II+ AL+ + Sbjct: 170 VEKIVATMPD-ATVETIIKQALKNL 193 >gi|270296033|ref|ZP_06202233.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20] gi|270273437|gb|EFA19299.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20] Length = 200 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S V + A + A++AL LG+ Q + Sbjct: 120 AQRIIVDLKDKIKTGSVVAGNAGTIGTLVSA---ANAQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A Q+I+LAL+ + Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200 >gi|94264074|ref|ZP_01287873.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta proteobacterium MLMS-1] gi|93455490|gb|EAT05680.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta proteobacterium MLMS-1] Length = 212 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 6/212 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D ++++V GV Y ++ P L G+ L+++T +R+D L Sbjct: 1 MIATLRGQLTQKGADSLIVEVGGVGYEVFFPAGRQDRLPPRGEELFLYIQTVVREDSFCL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++Q+F+LL V GVG R+AM +L+ L +I + + ++PG+ K Sbjct: 61 YGFVDAAEKQFFLLLLGVSGVGPRLAMNILAAAAPDVLGRAIATDDIAGLKKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R+ ELK K + EQ +A SAL+NLGY +A Sbjct: 121 AERLCLELKDKVDFFPAAKPLARPDQAPPAEQGADFGAQPVFQDAYSALLNLGYPPVRAR 180 Query: 179 TAVVSVLKKEKNIADDS----QIIRLALRAIS 206 +A+ V ++ + +++R+ LR+++ Sbjct: 181 SALEEVRRQLEQEPAGELPLPELLRITLRSLA 212 >gi|312897339|ref|ZP_07756765.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis F0359] gi|310621557|gb|EFQ05091.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis F0359] Length = 199 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG +E ++ V IDV GV Y +Y P+ TL+ L +G+ L+ ++R+D I L Sbjct: 1 MIGYVKGTVECIFASSVFIDVHGVGYRVYAPVSTLAHLN-VGEESLLYTYMNVREDAIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + FMLL V GVG +VA G+LS ++ ++ ++ ++PGI K Sbjct: 60 YGFLTQDEYDLFMLLIGVNGVGPKVANGILSATGTDSFRAAVANKDIGLLTKMPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K + S S +++ + +AL LGY + + Sbjct: 120 AERIVLELQDKVGTPVS------SGESEKTPEPSPIEGIGAEVTAALAGLGYSEREIEPI 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + K+ + +++ LRA+ Sbjct: 174 IAREAKEHDS---VESLLKACLRALGT 197 >gi|326560238|gb|EGE10626.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 7169] gi|326566444|gb|EGE16594.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC1] Length = 204 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + L IG ++V H+R+D I Sbjct: 1 MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGTQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK + + + A + SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPADNSML--IVAEVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|310829219|ref|YP_003961576.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612] gi|308740953|gb|ADO38613.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612] Length = 203 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 109/202 (53%), Gaps = 7/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKGN E DY+++D QG+ Y I T+S L K+ +++ ++D + L Sbjct: 1 MFEYIKGNYEEQASDYIVVDHQGMGYRINVSANTMSELPKLHKEVKVYIHPAFKEDDVTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F + ++ G+G + AMG+LS+ T EL+ I+ +++K I++ PGI K Sbjct: 61 YGFSSKEEREIFRTIITISGIGPKAAMGLLSQFTRDELIRYIVNEDAKAISRAPGIGQKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K + + + + ++ + A++ L+ LGYG +A+ Sbjct: 121 ANRIILELKDKYKNFAFTDSAEPGAIE----NLRETDNLFNEAVNGLLGLGYGYAEASEL 176 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V +++ +I I++ AL Sbjct: 177 VEKIIQPGMSI---EDILKNAL 195 >gi|71275803|ref|ZP_00652087.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon] gi|71900402|ref|ZP_00682535.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1] gi|170730217|ref|YP_001775650.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M12] gi|229560142|sp|B0U2E1|RUVA_XYLFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71163381|gb|EAO13099.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon] gi|71729834|gb|EAO31932.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1] gi|167965010|gb|ACA12020.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa M12] Length = 194 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L +G LF + D L Sbjct: 1 MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R+ F LQ V G+G ++A+ VLS ++ I + + IPGI K Sbjct: 61 YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A ++ + A AL LGY +A Sbjct: 121 AERMLVELRDRAADFNNGISTSGKL----------NLDTVSEAALALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 D + +I+ AL+A Sbjct: 171 ARDA---GTESDDVATVIKKALQA 191 >gi|326201641|ref|ZP_08191512.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM 2782] gi|325988241|gb|EGD49066.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM 2782] Length = 201 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E D ++++ G+ Y I+ + T++ LG+ G +F ++R+D L Sbjct: 1 MFAYIKGTVEVKNNDSIIVEAGGIGYRIFTALSTINNLGQTGTTVKIFTHYYVREDIAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L +V GVG + A+ ++S ++ + +++ Q++K + + GI MK+ Sbjct: 61 YGFGTMEELSMFEMLLAVSGVGPKAAISLISTLSPSRFALAVVSQDTKSLTKAQGIGMKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + S A+SAL+ LGYG +A+ Sbjct: 121 AQRIILELKDKISKEQLTASIPTAG---SENSFAPGDSVLSEAVSALMVLGYGSVEASGI 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + +I+ AL+++S Sbjct: 178 ITGIYE---DGMSVEDLIKKALKSLS 200 >gi|15838502|ref|NP_299190.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa 9a5c] gi|20455272|sp|Q9PC77|RUVA_XYLFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|9106999|gb|AAF84710.1|AE004010_7 holliday junction binding protein, DNA helicase [Xylella fastidiosa 9a5c] Length = 194 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L +G LF + D L Sbjct: 1 MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFYELPNVGYEVNLFTHYTQKDDSAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R+ F LQ V G+G ++A+ VLS ++ I + + IPGI K Sbjct: 61 YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A ++ + A AL LGY +A Sbjct: 121 AERMLVELRDRAADFNNGISTSGKL----------NLDTVSEAALALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 D + +I+ AL+A Sbjct: 171 ARDA---GTESDDVASVIKKALQA 191 >gi|84516659|ref|ZP_01004018.1| Holliday junction DNA helicase motor protein [Loktanella vestfoldensis SKA53] gi|84509695|gb|EAQ06153.1| Holliday junction DNA helicase motor protein [Loktanella vestfoldensis SKA53] Length = 218 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 118/216 (54%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV Y++Y R ++ L + G+ L+ + +R+D ++L Sbjct: 1 MIGKIAGRLEYRSTDHVLIDVRGVGYLVYVSDRVMASLPRNGEAVALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + +I L + +A+ G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKARGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA----------INAISALVNL 170 A R++ ELK KA + ++ + E P+ +A+SAL NL Sbjct: 121 AQRVIIELKDKAPGVMALGAGLSAATGDEVIEADPAPAPRATPQPASTAQADAMSALANL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GY A +AVV L + AD +IR AL+ ++ Sbjct: 181 GYAPGDAASAVVQALGADPQ-ADAGVLIRAALQLLA 215 >gi|257055537|ref|YP_003133369.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora viridis DSM 43017] gi|256585409|gb|ACU96542.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora viridis DSM 43017] Length = 199 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + D+ +I+V GV + + TL L + G L+ +R+D + L Sbjct: 1 MISSIRGEVLAVGLDHAVIEVGGVGFTVQATPTTLGTL-RRGTEARLYTTLMVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF R+ F LLQ+V G+G R+AM L+ + +L ++ + + Q+PGI K Sbjct: 60 FGFADVESRELFGLLQTVSGIGPRLAMAALAVLEPEKLRRALADGDITTLTQVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V M + + ++ALV LG+ QA A Sbjct: 120 AERLIIELRDK-------VSAPMGGEPAPDEGTTVGSAVRADVVAALVGLGFSAKQAEQA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + N D SQ++R AL + Sbjct: 173 VDKVSGEVPN--DTSQVLRAALATL 195 >gi|83816675|ref|YP_444603.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855] gi|294506349|ref|YP_003570407.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8] gi|123726210|sp|Q2S5C8|RUVA_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83758069|gb|ABC46182.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855] gi|294342677|emb|CBH23455.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8] Length = 202 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D L+DV G+ Y ++ P T L + TL ++R+D L Sbjct: 1 MIDYVSGTLVDKTTDSALVDVNGLGYRVHVPTSTYKRLPDTDEEVTLHTYHYLREDDESL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + V VG ++A+ LS +T TEL + ++ + + QI G+ K Sbjct: 61 YGFATKAERTVFETMTGVSRVGPKLALSALSAMTPTELRDHVMEGDKSRLTQISGVGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + L + + + + AL LG + A + Sbjct: 121 ADRLIVELRDRLADLDVLEDTSPLSGGSDARAEARADA-----LEALTELGLSKADAERS 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + VL+ I +++R AL+A Sbjct: 176 IRQVLRDNAGIQSADELVRRALKA 199 >gi|257431064|ref|ZP_05607443.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 68-397] gi|257433750|ref|ZP_05610108.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus E1410] gi|257436665|ref|ZP_05612709.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M876] gi|257278267|gb|EEV08909.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 68-397] gi|257281843|gb|EEV11980.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus E1410] gi|257284016|gb|EEV14139.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M876] Length = 203 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 4 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 63 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSKRELAK- 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 178 VEKTLNKNK-YDSVDEAVKAGLQ 199 >gi|329961622|ref|ZP_08299681.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057] gi|328531614|gb|EGF58448.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057] Length = 200 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGIAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S+ + + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTGSAAAGDTGTIGG---LLTAANAQIQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +LK++ + A Q+I+LAL+ + Sbjct: 177 VLGILKEDPD-ASVEQVIKLALKRL 200 >gi|282916910|ref|ZP_06324668.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus D139] gi|283770716|ref|ZP_06343608.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus aureus subsp. aureus H19] gi|282319397|gb|EFB49749.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus D139] gi|283460863|gb|EFC07953.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus aureus subsp. aureus H19] Length = 200 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196 >gi|160889167|ref|ZP_02070170.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492] gi|156861174|gb|EDO54605.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492] Length = 200 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S V + A + AI+AL LG+ Q + Sbjct: 120 AQRIIVDLKDKIKTGSVVAGNAGTIGTLVSA---ANAQVQEEAIAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A Q+I+LAL+ + Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200 >gi|49483886|ref|YP_041110.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA252] gi|257425766|ref|ZP_05602190.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428426|ref|ZP_05604824.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 65-1322] gi|282904222|ref|ZP_06312110.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C160] gi|282906048|ref|ZP_06313903.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908961|ref|ZP_06316779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911278|ref|ZP_06319080.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914447|ref|ZP_06322233.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M899] gi|282919416|ref|ZP_06327151.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C427] gi|282924793|ref|ZP_06332459.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C101] gi|283958402|ref|ZP_06375853.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus A017934/97] gi|293503520|ref|ZP_06667367.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 58-424] gi|293510539|ref|ZP_06669244.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M809] gi|293537082|ref|ZP_06671762.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M1015] gi|295428217|ref|ZP_06820849.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590815|ref|ZP_06949453.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus MN8] gi|56749557|sp|Q6GG62|RUVA_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49242015|emb|CAG40713.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA252] gi|257271460|gb|EEV03606.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275267|gb|EEV06754.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 65-1322] gi|282313159|gb|EFB43555.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C101] gi|282317226|gb|EFB47600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C427] gi|282321628|gb|EFB51953.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M899] gi|282324973|gb|EFB55283.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327225|gb|EFB57520.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331340|gb|EFB60854.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595840|gb|EFC00804.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C160] gi|283790551|gb|EFC29368.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus A017934/97] gi|290919927|gb|EFD96995.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M1015] gi|291095186|gb|EFE25451.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 58-424] gi|291466430|gb|EFF08951.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M809] gi|295128575|gb|EFG58209.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575701|gb|EFH94417.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus MN8] gi|312437891|gb|ADQ76962.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH60] gi|315195545|gb|EFU25932.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus CGS00] Length = 200 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196 >gi|327475178|gb|AEA77184.1| holliday junction DNA helicase [Bacillus aquimaris] Length = 203 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +YV+++ G+ Y +Y +F H+R+D I L Sbjct: 1 MYEYIKGTISQVSPEYVVVENNGIGYQLY-TANPFVYSKYHNQEIQIFTYQHVREDIIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ FM L +V G+G + A+ +L+ +++ +I +N + + PG+ K Sbjct: 60 YGFLSLEEKLLFMKLLNVSGIGPKGALAILASGAPQQVITAIEEENESFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + + N E + AI AL LGY + Sbjct: 120 ARQMILDLKGKLQDVVPDYFPSLFNHNDETEALSDKDEAFDEAILALKALGYSDREIKK- 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LK E + AD +IIR AL+ + Sbjct: 179 ITPKLKGEGHSAD--EIIRKALQLL 201 >gi|325954455|ref|YP_004238115.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa DSM 16922] gi|323437073|gb|ADX67537.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa DSM 16922] Length = 193 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++ Y ++D GV Y + + T S L I + TL+ + +R D L Sbjct: 1 MITQLRGRLVEVHPSYAVVDCNGVGYWVNISLNTYSSLV-IDEVITLYTQQIIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG AM +LS ++ E+ +I +++K++ + GI K Sbjct: 60 YGFNTIEERSIFQKLISVNGVGPASAMMMLSTLSPKEIQTAIYTEDAKLLQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K ++ + NK I A+SAL LG + A Sbjct: 120 AQRIIIDLKDKLEEINLEDVNSLPHKNK----------TRIEALSALEVLGIPRKVAEKT 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VL K + A +++ L+ + Sbjct: 170 IDQVLDKNAD-ATVETLVKETLKKL 193 >gi|150009258|ref|YP_001304001.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis ATCC 8503] gi|256841816|ref|ZP_05547322.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13] gi|298376955|ref|ZP_06986909.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19] gi|301311050|ref|ZP_07216979.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3] gi|166230579|sp|A6LFB5|RUVA_PARD8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149937682|gb|ABR44379.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis ATCC 8503] gi|256736710|gb|EEU50038.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13] gi|298265939|gb|EFI07598.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19] gi|300831113|gb|EFK61754.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3] Length = 196 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T S G +++ +R+D L Sbjct: 1 MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R+ F+LL SV GVG A +LS + +ELV+ I +N + + GI +K Sbjct: 60 FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S+ S + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------VSNGAVTEEAVAALVMLGFQKAASQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK +A Q+I+ ALR + Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196 >gi|253578705|ref|ZP_04855976.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39B_FAA] gi|251849648|gb|EES77607.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39BFAA] Length = 202 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + E V+++ G+ Y IY LS + ++G+ + +R+D ++L Sbjct: 1 MIAFVHGMAVDMTESSVVVEAGGIGYEIYMTGADLSEI-RMGEDVKVHTYFSVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D Q F LL V GVG + A+GVL+ ITA EL +I+ + K +++ PGI K Sbjct: 60 YGFRAKDDLQMFKLLLGVNGVGPKAALGVLAGITADELRFAILSDDVKTLSKAPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + + + + A+ ALV LGY A A Sbjct: 120 AQKLILELKDKMKLEDAFELKLVHEQERAAVGAGEVSDGRQEAVEALVALGYSSADALRA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V + D +++ AL+ Sbjct: 180 VRKVTDVSPD--DVEGLLKAALK 200 >gi|170759601|ref|YP_001788391.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str. Loch Maree] gi|229560024|sp|B1L0B3|RUVA_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169406590|gb|ACA55001.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str. Loch Maree] Length = 197 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ A+ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + D +NK + + A++ALV LGY + +A+ Sbjct: 121 AQRIILELKDKI-EIDISEEDDEQIINK-----VTDDKKVLEAVAALVTLGYSEKEASKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K QII+ AL+ + Sbjct: 175 INLCDKNN----SLEQIIKEALKHL 195 >gi|255658187|ref|ZP_05403596.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM 20544] gi|260849495|gb|EEX69502.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM 20544] Length = 199 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + LY DY L+DV GV Y ++ T + L ++ + +LF T +R+D I L Sbjct: 1 MIGYLHGRVIALYTDYCLLDVHGVGYRVFLANSTRAKL-RLKEEASLFTYTSVREDAIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+ L V G+G +VA+G+LS IT L +I + + V+ ++PGI K Sbjct: 60 YGFATEEEYELFLQLIGVSGIGPKVALGILSAITVESLCRAIQNKQASVLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K S ++ ++ N+ + A++AL +LGY Q + Sbjct: 120 AERLILELKDKVAFADSGEEELLTIENEAEVG----DDAVAEAMAALQSLGYTQAEIAPV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K II+ +L+A+S Sbjct: 176 IRKTAK----YKTTEAIIKESLKALS 197 >gi|229086983|ref|ZP_04219140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-44] gi|228696359|gb|EEL49187.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-44] Length = 205 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV++D G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDVERFDEKKGSSAELDEALEALRALGYAEREVNRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +LK+ Q I+ AL + Sbjct: 179 IPELLKE---SLTTDQYIKKALSLL 200 >gi|258424067|ref|ZP_05686949.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635] gi|294848671|ref|ZP_06789417.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754] gi|257845688|gb|EEV69720.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635] gi|294824697|gb|EFG41120.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754] Length = 203 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 4 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 63 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 178 VEKTLNKNK-YDSVDEAVKAGLQ 199 >gi|325105978|ref|YP_004275632.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM 12145] gi|324974826|gb|ADY53810.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM 12145] Length = 194 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + Y++++ G+ Y I + T S L K + C L+ H+++D + Sbjct: 1 MYEYIDGKLVYKCPTYIVLEATGIGYHINISLNTFS-LVKDQEKCKLYTWLHVKEDGHTM 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L SV GVG A +LS I+ E+ ++II +I I GI K Sbjct: 60 YGFADEGERRLFLHLISVNGVGPNTARMMLSSISPIEIEQAIIKGEVGLIKSIKGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ K + I + AISALV LG+ ++ A A Sbjct: 120 AQRLIIDLQDKLQK----------SGDGTLIAIRQDYTAREEAISALVMLGFAKNNAEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S +KK I +II++AL+++ Sbjct: 170 VDSAVKKSDKILSVEEIIKIALKSL 194 >gi|152976839|ref|YP_001376356.1| Holliday junction DNA helicase motor protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189045741|sp|A7GTA3|RUVA_BACCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152025591|gb|ABS23361.1| Holliday junction DNA helicase RuvA [Bacillus cytotoxicus NVH 391-98] Length = 205 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +Y+++D G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYIVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ + + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIENEDERFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + V D+ + + A+ AL LGY + + Sbjct: 119 ARQMILDLKGKLADVVPDVFVDLFSDEERFDEKKGSSTELDEALEALRALGYAEREINRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +LK+ Q I+ AL + Sbjct: 179 LPELLKE---SLTTDQYIKKALSLL 200 >gi|296113247|ref|YP_003627185.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4] gi|295920941|gb|ADG61292.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4] Length = 204 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + L IG ++V H+R+D I Sbjct: 1 MIGMISGRVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK + + + A + SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPADNSML--IIAEVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|261749358|ref|YP_003257043.1| Holliday junction DNA helicase motor protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497450|gb|ACX83900.1| Holliday junction DNA helicase motor protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 202 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + + ++ID GV Y ++ T S L + G +++ ++++Q Sbjct: 1 MITHLRGKLIEKNQSSLIIDCNGVGYYLHISSYTYSSLLEEEGKEISIYTYLFIKENQHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++R+ F L SV G+G A+ +LS +T E+ ESI ++ +V Q+ GI K Sbjct: 61 LYGFFERIERKIFSHLISVNGIGPSSAITILSSLTPHEIKESISREDIEVFNQVKGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K S + + VN A+SAL+ LG+ ++ Sbjct: 121 TAQRIIIELKDKISISPSTIPKKGKNVNFFDKPPIF---IKKEALSALIVLGFSPKESKK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + +L K +I+ +L+ + Sbjct: 178 VLEEILDKNPEFT-VENLIKESLKKL 202 >gi|255015865|ref|ZP_05287991.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_7] Length = 196 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T S G +++ +R+D L Sbjct: 1 MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGS-KTTGKIYIYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R+ F+LL SV GVG A +LS + +ELV+ I +N + + GI +K Sbjct: 60 FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S+ S + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------VSNGAVTEEAVAALVMLGFQKAASQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK +A Q+I+ ALR + Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196 >gi|57650523|ref|YP_186536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus COL] gi|82751240|ref|YP_416981.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus RF122] gi|87160146|ref|YP_494293.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195453|ref|YP_500257.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221756|ref|YP_001332578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. Newman] gi|161509868|ref|YP_001575527.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253733107|ref|ZP_04867272.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH130] gi|258450532|ref|ZP_05698594.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948] gi|262048631|ref|ZP_06021514.1| holliday junction DNA helicase [Staphylococcus aureus D30] gi|262051292|ref|ZP_06023516.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3] gi|282920191|ref|ZP_06327916.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765] gi|284024698|ref|ZP_06379096.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 132] gi|304380761|ref|ZP_07363429.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|71153735|sp|Q5HFC1|RUVA_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123098028|sp|Q2FXT3|RUVA_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123740965|sp|Q2YT88|RUVA_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123763287|sp|Q2FG85|RUVA_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|172048928|sp|A6QHI4|RUVA_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045775|sp|A8Z2H0|RUVA_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57284709|gb|AAW36803.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus COL] gi|82656771|emb|CAI81200.1| Holliday junction DNA helicase [Staphylococcus aureus RF122] gi|87126120|gb|ABD20634.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203011|gb|ABD30821.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374556|dbj|BAF67816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. Newman] gi|160368677|gb|ABX29648.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728863|gb|EES97592.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH130] gi|257861690|gb|EEV84489.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948] gi|259160929|gb|EEW45949.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3] gi|259163278|gb|EEW47837.1| holliday junction DNA helicase [Staphylococcus aureus D30] gi|282594539|gb|EFB99524.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765] gi|283470918|emb|CAQ50129.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ST398] gi|298694921|gb|ADI98143.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|302333315|gb|ADL23508.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus JKD6159] gi|304340698|gb|EFM06630.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198657|gb|EFU28985.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS01] gi|320140471|gb|EFW32325.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144010|gb|EFW35779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA177] gi|323440805|gb|EGA98514.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O11] gi|323442846|gb|EGB00471.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O46] gi|329314316|gb|AEB88729.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus aureus subsp. aureus T0131] gi|329728425|gb|EGG64862.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 21189] gi|329733154|gb|EGG69491.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 21193] Length = 200 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196 >gi|326390112|ref|ZP_08211673.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus JW 200] gi|325993760|gb|EGD52191.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus JW 200] Length = 187 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + +DYV+ID G+ ++ P TL L G+ L+ HMR+D ++ Sbjct: 1 MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS ++ V+++ + + K + PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + +F+ A+ AL+ LGY + +A A Sbjct: 121 AERIILELKDKLPK---------------EIVFEGDNNFSNEALEALLALGYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ AL+ + Sbjct: 166 LADI-----TCDSVEEAVKQALKKL 185 >gi|289578210|ref|YP_003476837.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus Ab9] gi|297544491|ref|YP_003676793.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527923|gb|ADD02275.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus Ab9] gi|296842266|gb|ADH60782.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 187 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + ++YV+ID G+ ++ P TL L G+ L+ H+R+D ++ Sbjct: 1 MIEYIRGMIEDIGQNYVIIDFMGIGIKVFVPFSTLKALPTKGNITKLYTYLHVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS + + + + K + +PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVNGVGPKGALSILSVVPIDNFAKVVNTGDYKALTLVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + S + + A+ AL+ LGY + +A +A Sbjct: 121 AERIILELKDKLPK---------------EIVFESDNNLSNEALEALLALGYSKSEAISA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ AL+ + Sbjct: 166 LADI-----TCNSVEETVKQALKKL 185 >gi|253732298|ref|ZP_04866463.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724087|gb|EES92816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 200 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + ++ + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKQLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196 >gi|258543669|ref|YP_003189102.1| Holliday junction DNA helicase RuvA [Acetobacter pasteurianus IFO 3283-01] gi|256634747|dbj|BAI00723.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-01] gi|256637803|dbj|BAI03772.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-03] gi|256640857|dbj|BAI06819.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-07] gi|256643912|dbj|BAI09867.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-22] gi|256646967|dbj|BAI12915.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-26] gi|256650020|dbj|BAI15961.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-32] gi|256653010|dbj|BAI18944.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656064|dbj|BAI21991.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-12] Length = 202 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +IDV GV Y++ RTL+ L + L +ET +R+D I L Sbjct: 1 MIAFLCGLVIQVDLGSCVIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+WF LL SVQGVGA+VA+G+LS ++ ELV +++ + + + PG+ ++ Sbjct: 61 YGFMESAEREWFRLLTSVQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ KA + A S +A+ AL LG+ + +A Sbjct: 121 AERILTELRDKAGKMPGGG-----GGITIPAMATPAGSIEADALMALAGLGFRRAEAAPV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+ A +IR +L+ ++ Sbjct: 176 VRKVMDAHGAAATLDLVIRDSLKDLA 201 >gi|167764704|ref|ZP_02436825.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC 43183] gi|167697373|gb|EDS13952.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC 43183] Length = 200 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPASATIDCNGLGYAVNISLNTYAAI-QGKKSCKLYIYEAIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + A + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTCGMASG---AVDITGPAFTAANAQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK++ N A Q+I+LAL+ + Sbjct: 177 VTAILKEDAN-APVEQVIKLALKRL 200 >gi|262384145|ref|ZP_06077281.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B] gi|262295043|gb|EEY82975.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B] Length = 196 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T S G +++ +R+D L Sbjct: 1 MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R+ F+LL SV GVG A +LS + +ELV+ I +N + + GI +K Sbjct: 60 FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S+ S + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------ISNGAVTEEAVAALVMLGFQKAASQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK +A Q+I+ ALR + Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196 >gi|229918406|ref|YP_002887052.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b] gi|259495643|sp|C4L522|RUVA_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229469835|gb|ACQ71607.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b] Length = 195 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + +Y+ +DV GV Y ++ P + + +F ++R+DQ L Sbjct: 1 MIEFVKGPVAYVCAEYITLDVSGVGYKVHVPNPFFYR--EQDEHVIVFTHHYVREDQQTL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L SV G+G + A+ +++ L+++I +N K + + PG+ K Sbjct: 59 YGFRSRRERELFNKLLSVSGIGPKGALAIVASGDIDALIDAIETENEKYLTKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ +LKGK L+ + S A ALV LGY + + Sbjct: 119 AKQMALDLKGKLSELAP-------DYVPNEGLFAQGASELDEACEALVALGYSEREIAK- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L I I+ AL+ + Sbjct: 171 VRKALS--GEILTTDAYIKRALQLL 193 >gi|153955759|ref|YP_001396524.1| Holliday junction DNA helicase RuvA [Clostridium kluyveri DSM 555] gi|219856126|ref|YP_002473248.1| hypothetical protein CKR_2783 [Clostridium kluyveri NBRC 12016] gi|146348617|gb|EDK35153.1| RuvA [Clostridium kluyveri DSM 555] gi|219569850|dbj|BAH07834.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 196 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+ +DY++++ G+ Y I T++ KI + TL+++ +R+D I L Sbjct: 1 MYEYIKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKIDENITLYLQQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ G+GA+ A+ +LS + L +II + K + + PG+ K Sbjct: 61 YGFLTKEEINMFNLLLTINGIGAKAALSLLSISSVNNLKYAIISGDEKNLIRAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + Q+ + S + + AL+ LGY + +A A Sbjct: 121 AQRIILELKDKIKPEEIINQE-------KDHRQVSQEEETMEVLEALIALGYSEKEAGRA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ N +I+ AL+ + Sbjct: 174 VASI----DNNDSIESMIKNALKFL 194 >gi|23099492|ref|NP_692958.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831] gi|33301656|sp|Q8EPQ5|RUVA_OCEIH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|22777721|dbj|BAC13993.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831] Length = 201 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + L ++ +++DV G+ Y I CP + + H+R+D L Sbjct: 1 MIAYIKGTLNSLGDESLIVDVGGIGYEIVCP-NPFVFQDLLNQQIHIQTYHHVREDAQIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L SV G+G + A+ +L+ + + + ++ ++ K + PG+ K Sbjct: 60 FGFQNRDEKYLFTKLISVSGIGPKGALAILAGVDISGFIAAVENEDDKFLTSFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK S+ S+ + K + A+ AL LGY + Sbjct: 120 ARQIILDLKGKLTSVFSITDEQ----QKSSVSNVNNNEVYSEAMEALKALGYTDKEV-KQ 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V+ LKK+ + + IR AL ++ Sbjct: 175 VLPHLKKDNDALSVDEAIRKALALLA 200 >gi|294628363|ref|ZP_06706923.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14] gi|292831696|gb|EFF90045.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14] Length = 201 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +I+V GV + C TLS L +IG L +R+D + L Sbjct: 1 MIAFVSGAVAALAPDTAVIEVGGVGMAVQCTPNTLSTL-RIGQPAKLHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + V + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLG----------APVGAPAVGAPVTQGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206 V +V + Q+++ AL+ ++ Sbjct: 170 VAAVTPQAEAAGGAPQVGQLLKAALQTLN 198 >gi|239947225|ref|ZP_04698978.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921501|gb|EER21525.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of Ixodes scapularis] Length = 203 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 76/203 (37%), Positives = 124/203 (61%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ +I ++ + I G+ K+ Sbjct: 60 YGFLTLEEKSFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS + + P + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISS----GSTIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V S++ + I+ D Q+I+ AL+ Sbjct: 176 VQSIITQNPEISID-QLIKTALK 197 >gi|326562883|gb|EGE13170.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 46P47B1] gi|326563676|gb|EGE13928.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 103P14B1] gi|326565244|gb|EGE15429.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 12P80B1] gi|326570251|gb|EGE20296.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC8] gi|326570988|gb|EGE21012.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC7] gi|326573284|gb|EGE23252.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 101P30B1] gi|326576898|gb|EGE26804.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis O35E] Length = 204 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + L IG ++V H+R+D I Sbjct: 1 MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK + + + A + SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGKLNEFGEMHPMTAEGLFNQPADNSML--IIAEVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|253566072|ref|ZP_04843526.1| Holliday junction DNA helicase motor protein [Bacteroides sp. 3_2_5] gi|251945176|gb|EES85614.1| Holliday junction DNA helicase motor protein [Bacteroides sp. 3_2_5] Length = 201 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T S + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + AI+AL LG+ + A Sbjct: 120 AQRVIVDLKDKIK--TGAMAATAVGGAAGALLPAMNAEVQEEAIAALTMLGFAATPSQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|53714974|ref|YP_100966.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46] gi|60682940|ref|YP_213084.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis NCTC 9343] gi|265766821|ref|ZP_06094650.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16] gi|81314002|sp|Q5L9Q7|RUVA_BACFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81381448|sp|Q64PZ9|RUVA_BACFR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52217839|dbj|BAD50432.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46] gi|60494374|emb|CAH09170.1| putative holliday junction DNA helicase [Bacteroides fragilis NCTC 9343] gi|263253198|gb|EEZ24674.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16] gi|301164406|emb|CBW23964.1| putative holliday junction DNA helicase [Bacteroides fragilis 638R] Length = 201 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T S + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + AI+AL LG+ + A Sbjct: 120 AQRVIVDLKDKIK--TGAMAATAVGGAAGALLPAMNAEVQEEAIAALTMLGFAAAPSQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|325268803|ref|ZP_08135428.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella multiformis DSM 16608] gi|324988775|gb|EGC20733.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella multiformis DSM 16608] Length = 246 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI I+G + L +++ GV Y + + T S L + L+V T R D Sbjct: 42 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAL-QGKTTVKLYVHEAIMTGGRDD 100 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 101 SYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKGI 160 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 161 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPGTPAVDTAIKDEAVSALTMLGFSPAP 217 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L + ++ Q+++LAL+ I Sbjct: 218 SAKVVVSILTDQPDLP-VEQVVKLALKMI 245 >gi|210615646|ref|ZP_03290692.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787] gi|210150189|gb|EEA81198.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787] Length = 203 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 109/205 (53%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + ED +++DV G+ Y I+ P +++ L IG+ + ++R+D ++L Sbjct: 1 MISYIRGELSAIEEDKIIVDVNGIGYGIFMPGQSMGMLPPIGEEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS+++ +L +++ ++K I+ PGI K Sbjct: 61 FGFLTRDDLKIFKLVIGVSGIGPKGGLSILSQLSPDDLRFAVLANDAKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + + A + A+ AL LGYG ++ A Sbjct: 121 AEKLIIELKDKLSVEDILEKNSETVEYAGVADTAN--EVQAEAVQALTALGYGSTESMKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V E+ +D +++ AL+ + Sbjct: 179 VKKVTVTEETTVED--VLKQALKYM 201 >gi|147919262|ref|YP_687002.1| holliday junction resolvasome, DNA-binding subunit [uncultured methanogenic archaeon RC-I] gi|110622398|emb|CAJ37676.1| holliday junction resolvasome, DNA-binding subunit [uncultured methanogenic archaeon RC-I] Length = 201 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDY--VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQ 57 MI I+G I+ E V+I+ G+ Y ++ P L L + G+ C L++ T+ R+ D Sbjct: 1 MIAHIEGKIDAKSESEEVVVIEAGGIGYEVHVPTPVLDQLPQEGEDCKLYIHTNFREEDG 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + DR +F LL +V G+G +V +G++S T E+ E+I+ ++ K + ++ G+ Sbjct: 61 TTLYGFATIQDRDFFRLLLTVSGIGPKVGLGIMSGATVEEIAEAIVTEDLKTLTRMNGVG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A R++ ELK K L + + + +A+ ALV LGY + A Sbjct: 121 KKTAQRLVLELKDKVAKLRIMHHAK---------KQVKGDTASADAVDALVALGYSRQVA 171 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALR 203 + AV ++++ +LR Sbjct: 172 SDAVARARDNFTAPPLVNELVVASLR 197 >gi|239978432|ref|ZP_04700956.1| Holliday junction DNA helicase RuvA [Streptomyces albus J1074] gi|291450328|ref|ZP_06589718.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074] gi|291353277|gb|EFE80179.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074] Length = 208 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V G+ + C TLS L ++G+ L +R+D + L Sbjct: 1 MIASVSGTVAALAPDSAVVEVGGIGMAVQCTPDTLSGL-RVGEQARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQSMLAVHHPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + Q V A ++ +ALV LGY +A A Sbjct: 120 AQKLLLELKDRLGAPRGATQAARPAVASGPAP------WSEQLHTALVGLGYAPREADDA 173 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + E Q++R AL++++ Sbjct: 174 VAAVTPQAEAALAEGGRPAVPQLLRAALQSLN 205 >gi|167037426|ref|YP_001665004.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040093|ref|YP_001663078.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514] gi|256752590|ref|ZP_05493444.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus CCSD1] gi|300914176|ref|ZP_07131492.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561] gi|307724588|ref|YP_003904339.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513] gi|320115839|ref|YP_004185998.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|229560136|sp|B0K955|RUVA_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560137|sp|B0K0L7|RUVA_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166854333|gb|ABY92742.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514] gi|166856260|gb|ABY94668.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748528|gb|EEU61578.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus CCSD1] gi|300889111|gb|EFK84257.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561] gi|307581649|gb|ADN55048.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513] gi|319928930|gb|ADV79615.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 187 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G IE + +DYV+ID G+ ++ P TL L G+ L+ +R+D ++ Sbjct: 1 MIEYVRGIIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLQVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS ++ V+++ + K + PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNAGDYKALTVAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + +F+ A+ AL+ LGY + +A A Sbjct: 121 AERIILELKDKLPK---------------EIVFEGDNNFSNEALEALLALGYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ AL+ + Sbjct: 166 LADI-----TCDSVEDAVKQALKKL 185 >gi|126725530|ref|ZP_01741372.1| Holliday junction DNA helicase motor protein [Rhodobacterales bacterium HTCC2150] gi|126704734|gb|EBA03825.1| Holliday junction DNA helicase motor protein [Rhodobacterales bacterium HTCC2150] Length = 221 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G + D+VLIDV+GV YI+YC RTLS L G +L+ E +R+D ++L Sbjct: 1 MIGKITGIQDMRGTDHVLIDVRGVGYIVYCSDRTLSALPGKGQAVSLYTELLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQG+GA+ +M +L + A + +I L ++ I PG+ KI Sbjct: 61 FGFTTLFEKEWHKLLISVQGIGAKASMAILGTLGAEGVGRAITLGDATAIKAAPGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSV-------------VQQDMSCVNKEQAHICSMPSFAINAISAL 167 A R++ ELK KA ++ ++ D+ ++A +A+SAL Sbjct: 121 AQRVVLELKNKAPAIMALGGSLDEATGSVAAEPDDILIEAPQKAKTSPDAVAQSDALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG A AV V E AD +IR AL+ ++ Sbjct: 181 TNLGYGPSDAAMAVAEV-AGEMADADAGALIRAALQRLA 218 >gi|304436498|ref|ZP_07396472.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370544|gb|EFM24195.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 199 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG + DY L+DV V Y ++ +T + + L++ T++R+D I L Sbjct: 1 MIGFLKGKATHITSDYCLLDVHDVGYRVFISNQTRAHI-SPSAEVMLYIHTNVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F+ L + G+G +VA G+LS T + + ++ K I ++PGI K Sbjct: 60 YGFFSREEYDLFLHLIGISGIGPKVAQGILSSATVNDFYRMVQQKDVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K LS V D+ + S A AL+ LG+ + Sbjct: 120 AERILLELKDK---LSDVSVADLP-EGDNNVGTKTENSMIAEATEALLTLGFQDSEIQR- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + + ++IR AL + Sbjct: 175 ---VFRQRHSCQNTEELIRYALAEL 196 >gi|255533713|ref|YP_003094085.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366] gi|255346697|gb|ACU06023.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366] Length = 194 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + Y++++ GV Y + + T S L + C ++ H+++D L Sbjct: 1 MFEYIDGKLAFKCPTYIVVEAGGVGYHLNISLNTYSSLANT-ERCKVYTWLHVKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L SV G+G +LS IT E+ +I+ + +I +I GI K Sbjct: 60 YGFADEGERRLFLHLISVSGIGPNTGRMMLSSITPVEIQTAIVNADLALIQRIKGIGAKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S + A+SAL+ LG+ + + A Sbjct: 120 AQRLVLELQDKLKKEGS----------GSLIAAPLNNTVREEALSALMMLGFAKPASEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +K Q+I++AL+ + Sbjct: 170 IDNAVKNGGQDLSVEQMIKIALKNL 194 >gi|212638555|ref|YP_002315075.1| Holliday junction DNA helicase RuvA [Anoxybacillus flavithermus WK1] gi|226725432|sp|B7GFM6|RUVA_ANOFW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212560035|gb|ACJ33090.1| Holliday junction resolvasome, DNA-binding subunit [Anoxybacillus flavithermus WK1] Length = 197 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +YV+I+ GV Y I+ P S ++ ++R+D + L Sbjct: 1 MIEFIRGYVDYVCPEYVVIENNGVGYQIFTP-NPFSFQMNKQQQIVVYTYQYVREDVLAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ +LVE+I +N + + + PG+ K Sbjct: 60 YGFHTRQERMLFAKLLQVSGIGPKGALAILAAGQLEQLVEAIEAENDQFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++ ++ E+ + S AI AL LGY + Sbjct: 120 ARQMILDLKGKLQAIVPDAFPNLFTEPLEETNALS------EAIEALKALGYADKEIQKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ I+LAL+ + Sbjct: 174 VPMLRQE---RLSTEGYIKLALQKL 195 >gi|293371094|ref|ZP_06617631.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f] gi|292633752|gb|EFF52304.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f] Length = 200 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELVELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|314933806|ref|ZP_07841171.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87] gi|313653956|gb|EFS17713.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87] Length = 200 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + L+ +V+++ G+ Y I P + + +F +R+D L Sbjct: 1 MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNRDVQIFTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F L V G+G + A+ +L+ + + +I +N + Q PGI K Sbjct: 60 YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNGVKRAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ ++D + K + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKV----TITEEDSESLLKVDVNNDEQSQVVKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL K+ +++ + +++ L+ + Sbjct: 175 VEKVLNKQ-SVSSVDEAVKVGLQTL 198 >gi|193213411|ref|YP_001999364.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB 8327] gi|229560016|sp|B3QQG1|RUVA_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193086888|gb|ACF12164.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB 8327] Length = 204 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + +++V G+ Y ++ T S L G L+ H+R+D +L Sbjct: 1 MFAFLRGELVTASREEAVVEVSGIGYRLHISSGTSSRLPVPGSPVFLYTHYHVREDLQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + + Q F LL S+ GVG ++A+ VLS ++ E+ E+I+ + + I G+ K Sbjct: 61 FGFLDEEELQLFRLLLSISGVGPKLAIAVLSGLSVGEIQEAIVSNRPETLFGISGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + + Q S + + S +A++AL LG+ + A A Sbjct: 121 AARIILELRDKILKI----QPTSSAKAGAPSAVLSATQLIDDAVAALTTLGFPKASAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL+ + +++R +L A+ Sbjct: 177 VSKVLETTPGL-SVEELVRTSLAAM 200 >gi|160882733|ref|ZP_02063736.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483] gi|156111903|gb|EDO13648.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483] Length = 200 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ +S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGVSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|124268420|ref|YP_001022424.1| Holliday junction DNA helicase RuvA [Methylibium petroleiphilum PM1] gi|166230565|sp|A2SKV0|RUVA_METPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|124261195|gb|ABM96189.1| holliday junction DNA helicase [Methylibium petroleiphilum PM1] Length = 192 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+G++ G + VLIDV GV Y + P+ + L IG+ TL +R+D L Sbjct: 1 MLGRLTGLLAEKSPPQVLIDVGGVGYEVDVPMSSFFNLPAIGEKVTLLTHFVVREDAQVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F +L + GVG R A+ +LS +T +L +++ Q++ + ++PGI K Sbjct: 61 FGFLTAPERETFRMLIKISGVGPRTALSILSGLTVGDLAQAVTAQDASRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R L ++ + + + AL+ LGY + +A A Sbjct: 121 AER-----------LLLELKGKLGADLGPAIGGKPASDAQADILQALIALGYSEREAQAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ + S I+LAL+A++ Sbjct: 170 VKALPAEVG----VSDGIKLALKALA 191 >gi|149183130|ref|ZP_01861580.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1] gi|148849162|gb|EDL63362.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1] Length = 202 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 101/205 (49%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G ++ + +YV+++ G+ Y I+ L + T++ H+R+D + L Sbjct: 1 MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKFE-NQNTTIYTYQHVREDILAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ F+ L +V G+G + A+ +L+ +++ +I ++ + + + PG+ K Sbjct: 60 YGFLSMEEKMLFIKLLNVSGIGPKGALAILASGAPEQVISAIEGEDERFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + ++ K ++ + + A AL LGY + + Sbjct: 120 ARQMILDLKGKLQDVVPDYFPNLFQEGKHES-VSANDELVEEAALALKALGYSEREIKKV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++K ++I+ AL+ + Sbjct: 179 TPKLSSQDK---TTDELIKDALKLL 200 >gi|307266570|ref|ZP_07548102.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii Rt8.B1] gi|306918424|gb|EFN48666.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii Rt8.B1] Length = 187 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + +DYV+ID G+ ++ P TL L G+ L+ HMR+D +++ Sbjct: 1 MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGLQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS ++ V+++ + + K + PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + +F+ A+ AL+ LGY + +A A Sbjct: 121 AERIILELKDKLPK---------------KIVLEGDNNFSNEALEALLALGYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ AL+ + Sbjct: 166 LADI-----TCDSVEEAVKQALKKL 185 >gi|254487107|ref|ZP_05100312.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101] gi|214043976|gb|EEB84614.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101] Length = 221 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D+VLIDV+GV Y++YC RTL+ L +G+ LF + +R+D ++L Sbjct: 1 MIGKITGRIDYRAPDHVLIDVRGVGYLVYCSDRTLAALPGVGEAVALFTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + + +I L + + G+ KI Sbjct: 61 FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-------------HICSMPSFAINAISAL 167 A R++ +LK KA + ++ Q + +A S A+SAL Sbjct: 121 AQRVVLDLKDKAPGVMAMTQTLAEAHGEVEAVQVIEAPEAKRRPATAPNHSAQSEALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG A AV + AD +IR AL+ ++ Sbjct: 181 GNLGYGPGDAAGAVAQAAGDMPD-ADTPTLIRAALKLLA 218 >gi|298479676|ref|ZP_06997876.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22] gi|298274066|gb|EFI15627.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22] Length = 200 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++S +S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGVSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|256160418|ref|ZP_05458107.1| Holliday junction DNA helicase RuvA [Brucella ceti M490/95/1] gi|265998786|ref|ZP_06111343.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M490/95/1] gi|262553475|gb|EEZ09244.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M490/95/1] Length = 193 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 130/195 (66%), Gaps = 2/195 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDS 195 V + LK+ AD + Sbjct: 179 VAAALKETGEGADSA 193 >gi|237720151|ref|ZP_04550632.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4] gi|229450703|gb|EEO56494.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4] Length = 200 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ + S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGTSAAGGASAGLLLQ---PANVEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|15613787|ref|NP_242090.1| Holliday junction DNA helicase RuvA [Bacillus halodurans C-125] gi|20140284|sp|Q9KDI9|RUVA_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|10173840|dbj|BAB04943.1| holliday junction DNA helicase [Bacillus halodurans C-125] Length = 203 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + Y +++V GV Y +YCP + T++ ++R+D IRL Sbjct: 1 MIDYLRGTLTDIDHQYAVVEVHGVGYQVYCP-NPYEFEKERDSVITIYTFQYVREDVIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R F L +V G+G + A+ +L+ ++++I ++ + + PG+ K Sbjct: 60 YGFRTKEKRSLFEKLLNVSGIGPKGALAILATGQPEHVIQAIEEEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L + K A+ AL LGY + + Sbjct: 120 ARQIILDLKGKVDELHPGLFSQKEEQPKPH-EKNDGNQALDEAMEALKALGYVEKE-LKK 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L++E D I+ AL+ + Sbjct: 178 VKPKLEQETLTTD--AYIKKALQLM 200 >gi|254445801|ref|ZP_05059277.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium DG1235] gi|198260109|gb|EDY84417.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 2/204 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E +I+ G+ Y+++ P+ T + L G+ L R+D L Sbjct: 1 MIVSIEGILERATPLTAIINAGGLGYLVHIPVSTAAKLPANGETVKLHTHAVYREDSQSL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S+ +R +F LL V GVG +VA+G++S++ L+ +I ++ ++A+ PGI K Sbjct: 61 YGFASEDERNFFQLLIEKVSGVGPKVAIGMMSKLELPSLISAIGNADAVLLAKTPGIGKK 120 Query: 120 IASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK K + + + + + S +AI AL+ LGY Q A Sbjct: 121 TAERVVIELKDKLGAFAHTSSANPLQGLVPGNTAAAGKVSHEDDAILALLALGYKQSDAA 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202 +V ++ A +I+ AL Sbjct: 181 KSVGKAVEALGPNASTEALIKAAL 204 >gi|322382934|ref|ZP_08056766.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153054|gb|EFX45512.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 207 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DYV+IDV GV Y ++C + G+ TLF+ H+R+D L Sbjct: 1 MIDYLRGQLAVREMDYVVIDVHGVGYQVFCS-NPFGISAREGEEVTLFIHYHVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L V G+G +VA+G+L+ ++ +I +N + ++PGI K Sbjct: 60 FGFTTREEQTLFRKLIEVSGIGPKVALGILTGGRPDAVIAAIQQENVGFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K L + + +++ + E A SM A AL+ LGY + +A Sbjct: 120 AQRIILDLKDKLGLLPASIVDEVAVLTAE-AERNSMEGCWAEAKQALLALGYTETEADRT 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K + +LAL+A+ Sbjct: 179 WHLIQKDVKPADPVDTVTKLALKAL 203 >gi|260173998|ref|ZP_05760410.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D2] gi|315922266|ref|ZP_07918506.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2] gi|313696141|gb|EFS32976.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2] Length = 200 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|163814140|ref|ZP_02205532.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759] gi|158450589|gb|EDP27584.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759] Length = 208 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G +E + ++++ G+ Y + + ++ L + +F +R+D+I L Sbjct: 1 MISYITGTLEYQSGNSIVVECGGIGYSMMISGQFMNRLPAMHSHIKVFTYMSVREDEISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L SV GVG + AM +LS +T EL +++ ++ K I + GI K Sbjct: 61 YGFYDRDELEVFKVLLSVNGVGPKAAMSILSALTVNELRLAVVSEDVKAITRANGIGTKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN----AISALVNLGYGQDQ 176 ASRI+ ELK K + +N + + I+ ++AL LGY + Sbjct: 121 ASRIILELKDKLRLEDMIDAAYEDAMNGSRVGSGGVAQSDIDTRANVVAALTALGYSGVE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A AV V + D+ Q+++ +L+ I Sbjct: 181 AGRAVNRV--EGWQDMDEEQLLKASLKNI 207 >gi|304407532|ref|ZP_07389184.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus YK9] gi|304343483|gb|EFM09325.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus YK9] Length = 210 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +Y+++DV+ V Y ++ P + + T+++ H+R+D I+L Sbjct: 1 MIDFLKGPVAHWETEYIVLDVRDVGYRVFTPNP--YGFARSNEPVTVYIHHHVREDAIQL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L V G+G RVA+GVL+ +V +I +N + ++PGI K Sbjct: 59 FGFATREEQTMFRKLLDVSGIGPRVALGVLAGSRPEAIVAAIQQENVTFLTKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA----HICSMPSFAINAISALVNLGYGQDQ 176 A R++ +LK K + D S + + ++ A AL LGY + Sbjct: 119 AQRMILDLKDKLGNAPLAFGADPSVWDTNEGKGTTGEQAIAGAWPEAREALGALGYTAAE 178 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A + +++ AL+ + Sbjct: 179 LDKAFEGLRASITAEESVDSLMKRALQQL 207 >gi|217976203|ref|YP_002360350.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2] gi|254767375|sp|B8EJI5|RUVA_METSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|217501579|gb|ACK48988.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2] Length = 209 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 122/206 (59%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ EDYV++DV GV Y+++C RTL L G L ++T MR+D I+L Sbjct: 1 MIGKLKGLVDSQGEDYVILDVNGVGYVVHCSSRTLQNLPPQGQATALAIDTQMREDSIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +R+WF LLQSVQGVGA+VA+ + + E+V +I Q+ A+ G+ K+ Sbjct: 61 YGFASETEREWFRLLQSVQGVGAKVALAIQGVLRPGEIVTAIAAQDRAAFARASGVGAKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA +L + + ++ +AIS LVNLG+G+ QA A Sbjct: 121 AARILAELKDKAPALGASLHTLAGAGSEGAGVEAPASGAVSDAISVLVNLGFGRSQAAVA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + K + A + + AL+ ++ Sbjct: 181 VAASSKALGSGAGAGDLAKRALQELA 206 >gi|238926806|ref|ZP_04658566.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] gi|238885338|gb|EEQ48976.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] Length = 199 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG + DY L+DV V Y ++ +T + + L++ T++R+D I L Sbjct: 1 MIGFLKGKATHITSDYCLLDVHDVGYRVFISDQTRAHI-SPNAEVMLYIHTNVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F+LL + G+G +VA G+LS T + + ++ K I ++PGI K Sbjct: 60 YGFFSREEYDLFLLLIGISGIGPKVAQGILSSATVNDFYCMVQQKDVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K LS V +D+ A AL+ LG+ + Sbjct: 120 AERILLELKDK---LSDVSVEDLP-EGDNNVGAEIENGMVAEATEALLTLGFQDSEIQR- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++ + + ++IR AL + Sbjct: 175 ---VFRQKHSCQNTEELIRYALSEL 196 >gi|221639992|ref|YP_002526254.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides KD131] gi|254767384|sp|B9KKV6|RUVA_RHOSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221160773|gb|ACM01753.1| Holliday junction ATP-dependent DNA helicase ruvA [Rhodobacter sphaeroides KD131] Length = 224 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+Y RTL+ + +G+ L+ E +R+D ++L Sbjct: 1 MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEAVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------------AHICSMPSFAINAI 164 A R++ ELK KA +L ++ + E A PS +A+ Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPQPGTSSGSRRKTRAPEPPRPSHTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGY A AV + + AD + +IR AL+ ++ Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221 >gi|317480654|ref|ZP_07939741.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36] gi|316903161|gb|EFV25028.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36] Length = 200 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I L +ID G+ Y + + T + + + C L+V +R+D L Sbjct: 1 MIEYIRGGIAELSPATAVIDCNGLGYGVNISLNTYAAI-QGKKECKLYVYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S + A + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTGSVATGNAGTIGTLVSA---ANVQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A Q+I+LAL+ + Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200 >gi|298385152|ref|ZP_06994711.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14] gi|298262296|gb|EFI05161.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14] Length = 201 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ + V + + A++AL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGATVAGGSASAG--MLLQSASVEVQEEAVAALTMLGFAAAPSQKM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|149915610|ref|ZP_01904136.1| Holliday junction DNA helicase motor protein [Roseobacter sp. AzwK-3b] gi|149810502|gb|EDM70345.1| Holliday junction DNA helicase motor protein [Roseobacter sp. AzwK-3b] Length = 223 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 16/221 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I+ D+VLIDV+GV Y++YC RTL L ++G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRIDYRASDHVLIDVRGVGYLVYCSDRTLQSLPRVGEHTALYTDLVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I L + + GI K Sbjct: 61 FGFPTLIEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIALGDWNAVKAARGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM---------------PSFAINAIS 165 A R++ ELK K L ++ + + A+S Sbjct: 121 AQRVVNELKDKLPELMAMGTTPTASAPAPPSDAEDAVIEPASLAAAPPPPRSDAQAEALS 180 Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AL NLGY +A AV + + A+ + +IR ALR ++ Sbjct: 181 ALTNLGYAPGEAARAVAQAAESDPQ-AETAAMIRAALRLLA 220 >gi|327403822|ref|YP_004344660.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis DSM 16823] gi|327319330|gb|AEA43822.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis DSM 16823] Length = 192 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + ++I+ GV Y + + T S + + + + +R+D L Sbjct: 1 MITHLNGRLIEKNPTNLIIECGGVGYFVKISLNTFSAISST-ESVKVLTQQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV G+G A+ +LS ++ +E+ +I ++ + I I GI K Sbjct: 60 YGFATSEERDIFNFLLSVSGIGPNTAILMLSSMSPSEIANAIQTEDVRSIQAIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + ++ N + +A++AL++LG+ + A A Sbjct: 120 AQRVIIDLKDKMLKVEWTESTNIFAGN---------NTNRFDALTALISLGFDKKNAEKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +++ +I+ AL+ + Sbjct: 171 IEKIATGDES---VEDLIKGALKIL 192 >gi|302517991|ref|ZP_07270333.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78] gi|318057102|ref|ZP_07975825.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actG] gi|333028331|ref|ZP_08456395.1| putative holliday junction DNA helicase RuvA [Streptomyces sp. Tu6071] gi|302426886|gb|EFK98701.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78] gi|332748183|gb|EGJ78624.1| putative holliday junction DNA helicase RuvA [Streptomyces sp. Tu6071] Length = 206 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V G+ + C TLS L +IG+ + +R+D + L Sbjct: 1 MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ ++ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + ++ P + +ALV LGY +A A Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPPPWTEQLHTALVGLGYQPREAEEA 174 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + + ++R AL+ ++ Sbjct: 175 VEAVTPQAEAQEGVPEIGPLLRAALQTLN 203 >gi|291286413|ref|YP_003503229.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM 12809] gi|290883573|gb|ADD67273.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM 12809] Length = 192 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 15/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +ID V + + T L + G ++ MR+D + L Sbjct: 1 MIYSVRGILIEKNPANAVIDTGAVAFEMSISASTYQQLPETGQKAHVYTHFVMREDGVYL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F+LL ++ VG ++A+ +LS + + + +++ +I+ IPGI K Sbjct: 61 YGFSKMEEKKLFLLLITISKVGPKLALAILSGMDVNKFMNAVMNSEIGLISTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K S+S + E + +SAL+NLGY + A Sbjct: 121 AERIVVELRDKFGSMSVSTGDEPVAGGAE------------DVVSALLNLGYSRADCQKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V + K + ++ + AL+ +S Sbjct: 169 VNKIYKTDSGF---EELFKGALKELSS 192 >gi|225025938|ref|ZP_03715130.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353] gi|224956724|gb|EEG37933.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353] Length = 230 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 108/203 (53%), Gaps = 5/203 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I IKG + +D V+I+ G+ Y I P R L + G+ L ++R+DQ+ LF Sbjct: 28 ISYIKGTVAYKGKDSVVIENHGIGYQIKVPSRVLEGVNS-GEEAMLHTYLYVREDQLALF 86 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF S + + F +L + G+G + A+ VLS ++ +L ++ +++K IA+ PGI K A Sbjct: 87 GFSSIQELETFQILLGISGIGPKAALSVLSTMSVEDLYYAVFSEDAKSIAKTPGIGPKGA 146 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK K +L ++ + Q+ S A + + ALV LGY +A AV Sbjct: 147 KRMIIELKDKL-NLEALESVSGAEEAAPQSSFTEGDSIA-DTVQALVALGYSNGEAYRAV 204 Query: 182 VSVLKKEKNIADDSQIIRLALRA 204 SV + EK D Q+++ AL+ Sbjct: 205 HSVPEAEK--LDAEQLLKEALKK 225 >gi|297183449|gb|ADI19581.1| holliday junction resolvasome, DNA-binding subunit [uncultured Acidobacteria bacterium HF0770_27F21] Length = 192 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +YV++DV GV Y +Y P+ + +G+IGD L + TH+R D +L Sbjct: 1 MIAALRGLLHEKTPEYVIVDVGGVGYQVYLPLPSFYEIGEIGDEVLLRIHTHVRDDTFKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L SV G+G ++A+ +LS + L+ +I+ + ++ IPG+ K Sbjct: 61 YGFKDLPQQRLFERLISVAGIGPKLAVTILSGMDTDLLIGAIVDSDIVRLSTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K L V + +SAL NLGY A A Sbjct: 121 AERMALELKEKVDDLGLVSSD------------SGPRGIRQDVLSALENLGYRPRDAERA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V E +++ LR ++ Sbjct: 169 LEKV---EDPADQFEALLKQTLRVLA 191 >gi|229013638|ref|ZP_04170769.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides DSM 2048] gi|229169164|ref|ZP_04296879.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH621] gi|228614392|gb|EEK71502.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH621] gi|228747697|gb|EEL97569.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides DSM 2048] Length = 212 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 5/204 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L+ Sbjct: 9 FEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALY 66 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A Sbjct: 67 GFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTA 126 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +++ +LKGK + D+ + A+ AL LGY + + + V Sbjct: 127 RQMILDLKGKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVV 186 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +LK+ Q I+ AL + Sbjct: 187 PELLKE---SLTTDQYIKKALSLL 207 >gi|255011116|ref|ZP_05283242.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis 3_1_12] gi|313148926|ref|ZP_07811119.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12] gi|313137693|gb|EFR55053.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12] Length = 201 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T S + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFVDKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + A++AL LG+ + Sbjct: 120 AQRVIVDLKDKIK--TGAMAATAVGGAAGALLPAMNAEVQEEAVAALTMLGFAAAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|258405866|ref|YP_003198608.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM 5692] gi|257798093|gb|ACV69030.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM 5692] Length = 204 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG +KG++ + +D+ L+ GV Y + TL L + G LFV T +R+D + Sbjct: 1 MIGYLKGDVLRIRKDHCLLATAGGVGYDVQATAGTLGRL-EQGSEAELFVHTVVREDALE 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L V +G + ++ +LS T EL +++ + ++ GI K Sbjct: 60 LYGFASLAERDVFAELLGVSKLGPKTSLAILSTFTPEELARIAQTEDTAALTRVSGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RIM ELK K + + QA S S +A+S L LGY +++ Sbjct: 120 SAKRIMWELKDKLTAWEGE-----AVPGTPQATPASGGSVFGDALSGLCGLGYSEEEVRP 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + +L++E ++ D +IIR L+ ++ Sbjct: 175 VLSEILEQEPDL-DVGEIIRACLKRLA 200 >gi|282892421|ref|ZP_06300771.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497823|gb|EFB40184.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 200 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + +I+ G+ Y I+ P T L +IG L+V +R+ L Sbjct: 1 MYDYIKGMLISSSPTCAVIETSGIGYKIFIPTSTFGKLAQIGQNVQLYVSFVIREQSQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F +L +V G+G + A+ ++ + +T L +I Q+ ++++PG+ K Sbjct: 61 YGFFSAEERELFEILLAVSGIGPKTAIALIGHLPSTLLSAAIQGQDITTLSKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + +A++AL +LGY Q A A Sbjct: 121 AERLIVELKDKLK-----IGVHPAAELVTATPFSEKSQTITDALNALTHLGYNQAIAKQA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LK+ D + +I L+ I Sbjct: 176 IQKTLKEHSTDIDLATLITSTLKHI 200 >gi|332559001|ref|ZP_08413323.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N] gi|332276713|gb|EGJ22028.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N] Length = 224 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+Y RTL+ + +G+ L+ E +R+D ++L Sbjct: 1 MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------------AHICSMPSFAINAI 164 A R++ ELK KA +L ++ + E A PS +A+ Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPDPGTSSGSRRKTRAPEPPRPSHTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGY A AV + + AD + +IR AL+ ++ Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221 >gi|52081253|ref|YP_080044.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC 14580] gi|52786633|ref|YP_092462.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC 14580] gi|319644780|ref|ZP_07999013.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp. BT1B_CT2] gi|81384931|sp|Q65GP5|RUVA_BACLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52004464|gb|AAU24406.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580] gi|52349135|gb|AAU41769.1| RuvA [Bacillus licheniformis ATCC 14580] gi|317392589|gb|EFV73383.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp. BT1B_CT2] Length = 201 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K T++ ++R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KKNSKETIYTYHYVREDTNAL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F + +V G+G + A+ +L+ ++E+I ++ + + PG+ K Sbjct: 58 YGFSTREEKMLFTKMLNVTGIGPKGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + D+ ++E+ I + A+ AL LGY + Sbjct: 118 ARQIILDLKGKLADAVPEIAADLFN-HEEREQIHEAATALEEALEALRALGYSDREIKK- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V LKKE+ ++ D Q ++ AL+ + Sbjct: 176 VQPHLKKEEALSTD-QYVKKALQKL 199 >gi|218288865|ref|ZP_03493116.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius LAA1] gi|218240954|gb|EED08131.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius LAA1] Length = 208 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L YV +DV+ V Y ++ RT + L +GD L+ H+R+D L Sbjct: 1 MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAALN-LGDTAFLYTHHHVREDGWAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G ++A+ V+ E+V +I+ ++ + ++++PGI K+ Sbjct: 60 YGFETSEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDVESLSRLPGIGRKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASR++ EL+ K L+ S + + S S A +A+SALV LGY +A A Sbjct: 120 ASRLVVELREKLDDLAP------SALRPPSSAPGSQGSTAEDAVSALVALGYRPREAEEA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + +++ D I+ AL + Sbjct: 174 VSAVGRGRQSVEDT---IKAALTYL 195 >gi|29347388|ref|NP_810891.1| Holliday junction DNA helicase RuvA [Bacteroides thetaiotaomicron VPI-5482] gi|253570551|ref|ZP_04847959.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6] gi|44888484|sp|Q8A6A7|RUVA_BACTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29339288|gb|AAO77085.1| Holliday junction DNA helicase ruvA [Bacteroides thetaiotaomicron VPI-5482] gi|251839500|gb|EES67583.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6] Length = 201 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ + V + + A++AL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGATVAGGSASAG--MLLQSASVEVQEEAVAALTMLGFAAAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|296331680|ref|ZP_06874149.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675361|ref|YP_003867033.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151275|gb|EFG92155.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413605|gb|ADM38724.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 201 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K + T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERNQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L ++++I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + +++ ++E+ + + A+ AL LGY + + Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFN-HEERLEKQTAETALEEALEALRVLGYAEKEIKK- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ LK++ + D Q ++ AL+ + Sbjct: 176 VLPHLKEDTGLTTD-QYVKKALQKL 199 >gi|157693178|ref|YP_001487640.1| Holliday junction DNA helicase RuvA [Bacillus pumilus SAFR-032] gi|167012657|sp|A8FFR3|RUVA_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157681936|gb|ABV63080.1| crossover junction endoribonuclease subunit A [Bacillus pumilus SAFR-032] Length = 201 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + YV+I+ GV Y +Y P + + K T++ ++++D L Sbjct: 1 MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINK---QETIYTYHYIKEDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++ +I ++ + + PG+ K Sbjct: 58 YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + ++ +++ + + + A+ AL LGYG + Sbjct: 118 ARQIILDLKGKLADVVPEMIGNLFN-HEDHIQVETQQTALDEALEALSVLGYGDREIKK- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+EKN+ D Q ++ AL+ + Sbjct: 176 VYPLLKEEKNLTTD-QYVKKALQKM 199 >gi|83592424|ref|YP_426176.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170] gi|123739581|sp|Q2RVF6|RUVA_RHORT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83575338|gb|ABC21889.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170] Length = 212 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ + ED+ +IDV GV Y+++CP R L+ L G L VET +R+D I L Sbjct: 1 MIAKLKGLVDSVAEDHAVIDVGGVGYLVFCPARVLTRLPSPGQAVALVVETQVREDHISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +R WF LL +VQGVG++VA+ VLS ++A ++ ++I + + + PG+ K+ Sbjct: 61 FGFLETAERDWFRLLSTVQGVGSKVALSVLSVLSAGQISQAIAAGDKAALGRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA----HICSMPSFAINAISALVNLGYGQDQ 176 A+RI +ELK KA++L + + A +A+SALVNLGYG+ + Sbjct: 121 AARIASELKDKAVALGGMPAPPPRGAGTDAAGEGPPGGPTGDVLGDAVSALVNLGYGRSE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A A +I LALR + Sbjct: 181 AVGAASRAA--GLGATTVQGVIGLALRDL 207 >gi|332701178|ref|ZP_08421266.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio africanus str. Walvis Bay] gi|332551327|gb|EGJ48371.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio africanus str. Walvis Bay] Length = 202 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + E +++ GV Y ++ P+ L+ L G + E +R+D Sbjct: 1 MIGYIRGTLLEQTEKSCLVLTAGGVGYELHLPLPALARLPAEGQEVSFHTEQVVREDSQD 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S+ +G + + +LS+ +L + ++ ++ + ++ GI K Sbjct: 61 LYGFETSEERRLFHVLLSIPNLGPKKGLAILSQFHPDDLRQIVLHEDIAALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +I+ ELK K S D V ++ A S +A++ L NLGY +++A Sbjct: 121 TGQQILWELKYKLAS------ADAPAVGRKPAAPGR--SVLQDALAGLTNLGYSEEEARP 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + E ++ D +Q++R AL+AI+ Sbjct: 173 VLHKLFEAEPDL-DVAQLLREALKAIA 198 >gi|302391487|ref|YP_003827307.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM 5501] gi|302203564|gb|ADL12242.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM 5501] Length = 201 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + E ++IDVQGV Y + P + L IG+ ++ T++R+D+ L Sbjct: 1 MIAHLTGELVLKEEARIVIDVQGVGYEVMIPTSVQNRLPNIGEDIKVYTHTYVREDRFVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + F L V VG +VA+ +LS + A E ++ ++ +V+ ++ GI K Sbjct: 61 YGFLQLSELELFGKLLKVSKVGPKVAVSILSTLNAREFKLAVAKEDIEVLKEVKGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+KGK + +E++ A+ L+NLGY +A A Sbjct: 121 AQRLILEMKGKI--------DLDRIMEEEESSQSVDGIEREEAVEGLMNLGYNIQEAREA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V K A ++I+LAL+ Sbjct: 173 VTEACKGVDEAAGVEEVIKLALQK 196 >gi|288555342|ref|YP_003427277.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4] gi|288546502|gb|ADC50385.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4] Length = 205 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + + YV++D QG+ Y IYCP ++ + ++ H+R+D IRL Sbjct: 1 MIDYINGVLVDIETRYVVLDHQGLGYQIYCP-NPYQFSKQLDEKVKIYTYQHVREDLIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L +V G+G + A+ +L+ +V +I ++ + + PG+ K Sbjct: 60 FGFESKSERALFEKLLNVSGIGPKGALAILASGQPEHVVRAIEEEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-AHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK S + + + + E+ + + A+ AL LGY + + Sbjct: 120 ARQIILDLKGKLDEFSPNLFNESTGLVSEKMTKVNKENTELEEALEALRALGYVEKE-LK 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V L++E D I+ AL+ + Sbjct: 179 KVRPKLEQEDMATD--AYIKKALQLM 202 >gi|85703560|ref|ZP_01034664.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217] gi|85672488|gb|EAQ27345.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217] Length = 219 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 12/217 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I+ D+VLIDV+GV Y++YC RTLS L +G L+ + +R+D ++L Sbjct: 1 MIGRIAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPGVGGMAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I + + + GI K Sbjct: 61 FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPEGVGRAIAIGDWHSVTAAKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISALVN 169 A R++ ELK KA + ++ + + H + P A+SAL N Sbjct: 121 AQRVVNELKDKAPLIMAMGAAPPPAQDAGEVIETGPIQIAPVHAPTDPGAQAEALSALTN 180 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 LGY +A AV V + A + +IR ALR ++ Sbjct: 181 LGYSPGEAAGAVAQVAGEMPEAA-TADLIRAALRRLA 216 >gi|293567841|ref|ZP_06679182.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071] gi|291589426|gb|EFF21233.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071] Length = 200 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++ G+ Y I K+ ++V +R+D L Sbjct: 1 MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + A+ +++ + L++++ + + + PG+ K Sbjct: 60 YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK LS + + A+ AL LGY + Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEANTKDATA-----LSEAMEALSALGYSDREIKRV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K + D + +R AL+ + Sbjct: 175 EKQLKKVDNQTTD--EYLRQALKLM 197 >gi|21232455|ref|NP_638372.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767461|ref|YP_242223.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris str. 8004] gi|188990567|ref|YP_001902577.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris str. B100] gi|325921870|ref|ZP_08183684.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC 19865] gi|24212373|sp|Q8P6E5|RUVA_XANCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81306559|sp|Q4UXM0|RUVA_XANC8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560138|sp|B0RPY4|RUVA_XANCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|21114237|gb|AAM42296.1| holliday junction binding protein, DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572793|gb|AAY48203.1| holliday junction binding protein, DNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167732327|emb|CAP50519.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris] gi|325547651|gb|EGD18691.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC 19865] Length = 194 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY A Sbjct: 121 AERMVVELRDRAADFSSGAPITGQL----------GPDAVSEATVALQQLGYKP---AEA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + +IR AL+A Sbjct: 168 ARMAREAGAEGDEVATVIRKALQA 191 >gi|242373942|ref|ZP_04819516.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] gi|242348296|gb|EES39898.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] Length = 200 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + L+ +V+++ G+ Y I P + + ++ +R+D L Sbjct: 1 MYAYVKGTLSQLFPTHVVVETAGIGYEIQTP-NSYRFQTYLDKEVQIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F+ L V G+G + A+ +L+ T E+ ++I +N + Q PGI K Sbjct: 60 YGFISEEEKDMFLSLIKVTGIGPKSALAILAASTPNEVKQAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +++ + + + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKV----TINEENSDTLLQVDLNSTEQSQIVKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL K+ +I + ++L L+ + Sbjct: 175 VEKVLNKQ-SITSVDEAVKLGLQTL 198 >gi|308177527|ref|YP_003916933.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter arilaitensis Re117] gi|307744990|emb|CBT75962.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter arilaitensis Re117] Length = 205 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +IDV G ++ TLS L G T+F +R+D + L Sbjct: 1 MISSLTGTVQAVALNTAVIDVNGFGMLVNATPGTLSALHA-GREATVFTSMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F +L SV G+G R + +L+ + E+ + +++ ++ GI K Sbjct: 60 FGFATAEERDVFEVLISVSGIGPRTGLAILAVHSPEEVRIAANTKDTAAFTKVSGIGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL GK + + V N + + I AL LG+ + AT Sbjct: 120 ASRIVLELNGKLVPTGAPVPSSSGGGN--------VSVWEPQVIEALTGLGWSEKDATAT 171 Query: 181 VVSVLKKEKNI---ADDSQIIRLALRAISC 207 + S+ K + ++ + ++I+R ALR++S Sbjct: 172 LKSLSKADPDVIAAGNVAEILRAALRSMSS 201 >gi|86157379|ref|YP_464164.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans 2CP-C] gi|123750528|sp|Q2IPJ6|RUVA_ANADE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85773890|gb|ABC80727.1| Holliday junction DNA helicase subunit RuvA [Anaeromyxobacter dehalogenans 2CP-C] Length = 197 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +D+ ++DV GV Y+++ +L+ L G+ L V TH+R+D + L Sbjct: 1 MIARLAGRIAEKRDDHAIVDVGGVGYLVHVSQLSLASLPPPGEPAALRVYTHVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F L V+GVG R A +LS I A EL +++ + + ++ GI K Sbjct: 61 YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + A + +AL+NLGY QA Sbjct: 121 AERLVVELKDKLV---------ALARAAGPARAGAEADVLDQLRTALLNLGYRPPQAEG- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ +++R AL+ + Sbjct: 171 VAEALRDSAEGRPLDELLREALKRL 195 >gi|28211817|ref|NP_782761.1| Holliday junction DNA helicase RuvA [Clostridium tetani E88] gi|44888475|sp|Q891Z7|RUVA_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28204259|gb|AAO36698.1| holliday junction DNA helicase ruvA [Clostridium tetani E88] Length = 197 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+++DY+ ++ G+ Y I+ TL + + L+++ R D I L Sbjct: 1 MYDYIKGIYKGMHKDYITVENNGIGYKIFTSGNTLYETPEKDEEIKLYIQQIPRDDSINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R F LL ++ GVGA+ ++ +LS + +L SI+ +++ ++ + PGI K Sbjct: 61 YGFFTEEERDMFNLLMTISGVGAKSSLSLLSVTSINKLKYSIVTEDTTLLTRAPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + D I + + A+ AL++LGY Q ++ A Sbjct: 121 AERIILELKDKFKNDDIISDIDDLDS------ISNFQLHSAEALEALMSLGYSQKESEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V K+ II+ L+ + Sbjct: 175 LKNVDKEN----SLEDIIKACLKYL 195 >gi|257870592|ref|ZP_05650245.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2] gi|257804756|gb|EEV33578.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2] Length = 196 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + ++ Y++++ G+ Y + + GK+ +++ +R+D L Sbjct: 1 MYEYIIGKVTDIFPAYIVVETHGIGYQVAF-GNPYAFSGKLNQEVKIYLHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +Q F+ L SV G+G + A+ +++ L+ ++ + + + PG+ K Sbjct: 60 YGFSTLEGKQLFLKLISVSGIGPKSALAIMANEDHAGLITAVENGDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L + A + + A++AL LGY + + A Sbjct: 120 AQQMILDLKGKVAELVG---------EEPTAPVTVANTALDEAMAALKALGYSEKEIKKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +R AL+ + Sbjct: 171 --EKYLAPNTTKSTDEYLREALKLM 193 >gi|253681607|ref|ZP_04862404.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str. 1873] gi|253561319|gb|EES90771.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str. 1873] Length = 197 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG L +DY++++ + Y IY T+S + I + +++E +R+D + + Sbjct: 1 MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMSNMPNINEEVKIYIEQIVREDFMGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F LL ++ GVG++ A+ +LS + L +SI+ ++ K++ + PGI KI Sbjct: 61 YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVSNLKKSILSEDYKMLTKAPGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + +D+ ++K ++ AL+ LG+ Q +A A Sbjct: 121 AQRITLELKDKIEKIYEDNLEDIDNLSKNSTR------KYDESLEALIALGFSQKEAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + +II+ +LR + Sbjct: 175 LKDVDMSKG----IEEIIKNSLRYL 195 >gi|328953690|ref|YP_004371024.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca acetoxidans DSM 11109] gi|328454014|gb|AEB09843.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca acetoxidans DSM 11109] Length = 198 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DY++I V GV Y + P+ T L + L + T ++ D ++L Sbjct: 1 MIAYLEGELFQKRPDYLIIKVGGVGYQTFIPLSTFYQLPEPPASVALHIHTQVQTDSLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F + ++Q F+ L S+ VG R+A+ +LS I+ +L +++I + +A IPG+ K Sbjct: 61 YAFATLDEKQTFIKLLSIPRVGPRLALNILSGISPQDLAQTLIQGDIPRLAAIPGLGRKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM ELKGK ++ V S + +A+SAL+NLGY + A Sbjct: 121 AERIMVELKGKLRPDATAVSALSSG---------PQGALWEDALSALINLGYSRTLAEEV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + V EK + +I+RL+L ++ Sbjct: 172 LRHVQLHEKPLT-LEEILRLSLSRLAS 197 >gi|160892584|ref|ZP_02073374.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50] gi|156865625|gb|EDO59056.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50] Length = 200 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + E+Y++ID G+ Y I+ + L + G ++ ++R+D++ L Sbjct: 1 MIAYIAGALVSAGENYIVIDNHGMGYRIFVSGKFLERIPAYGTQIKVYTHMYIREDELTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F +L + GVG +VAM +L+ +T EL ++I +++K I++ G+ K Sbjct: 61 YGFHSEEELSVFRILIGISGVGPKVAMAILTALTIQELQLAVISEDAKTISKANGVGTKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K + + + A + A +AI ALVNLGY +A A Sbjct: 121 ASRIILELKDKLKMEDMMD----AAYEQSIAQNTQDVNAARDAILALVNLGYSNSEAALA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + D I++ AL+ + Sbjct: 177 VKKI--GDIGQMDTEAILKAALKKL 199 >gi|319761299|ref|YP_004125236.1| holliday junction DNA helicase ruva [Alicycliphilus denitrificans BC] gi|330823173|ref|YP_004386476.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans K601] gi|317115860|gb|ADU98348.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans BC] gi|329308545|gb|AEB82960.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans K601] Length = 190 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G +L + +R+D L Sbjct: 1 MIGKLTGALLEKNPPEVLLDCHGVGYEVLVPMSTFYNLPAVGQPVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L V GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFATQQERQAFRELIKVSGVGPRTALSILSGLGVADLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + + AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADMGGRPHAASADQADILQALLALGYNDKEAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK S+ I+LAL++++ Sbjct: 168 ----LKGLPADVGVSEGIKLALKSLA 189 >gi|121603423|ref|YP_980752.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans CJ2] gi|120592392|gb|ABM35831.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans CJ2] Length = 192 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + P+ T L +G+ +LF +R+D L Sbjct: 3 MIGRLTGQLAEKNPPEILVDCHGVGYEVLVPMSTFYNLPGLGEKISLFTHFIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVG R+A+ VLS ++ EL +++ LQ + I ++PGI K Sbjct: 63 YGFGSTAERGAFRQLIKITGVGPRMALSVLSGMSVAELAQAVTLQEAGRIVKVPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ AH+ ++ + ALV LGY A A Sbjct: 123 AER-------------LLLELKGKLGADIGAHVSVSSEAQLDILQALVALGYSDKDAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK S+ I+LALRA+ Sbjct: 170 ----LKALPPDVGVSEGIKLALRAL 190 >gi|119716613|ref|YP_923578.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp. JS614] gi|166230576|sp|A1SJA6|RUVA_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119537274|gb|ABL81891.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp. JS614] Length = 200 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++V GV I C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVRGQVAAVTLSSAVLEVGGVGLDIMCTPGTLATL-RVGQQAALPTSMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q F LLQ+ GVG ++A +L+ ++ +L +I + K + ++PGI K Sbjct: 60 FGFADEDEKQTFELLQTASGVGPKLAQAMLAVLSTDDLRLAITGDDVKTLTRVPGIGQKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ + + + LV LG+ A A Sbjct: 120 AQRIILELRDRI-------GAPTGAGRSAGVPAPAGAVWRDQVHQGLVGLGWPVRDAEKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V + ++ D + ++R ALR +S Sbjct: 173 VAAVAPEAGDVPDVAALLRAALRTLS 198 >gi|326773260|ref|ZP_08232543.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505] gi|326636490|gb|EGE37393.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505] Length = 217 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 8/212 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L ++G+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM----PSFAINAISALVNLGYGQDQ 176 A R++ ++ K ++ V + + +M P + ++ALV LG+ + Sbjct: 120 AQRVILDVADKLGPVTGDDLGAAQTVAQSAQGVEAMSDGGPEPHADVVAALVQLGWNEAS 179 Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAI 205 A AV SV + D + ++R +LR + Sbjct: 180 AQQAVSSVTADAADGGQEPDMAAVLRASLRWL 211 >gi|311742330|ref|ZP_07716139.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium marinum DSM 15272] gi|311313958|gb|EFQ83866.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium marinum DSM 15272] Length = 199 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 18/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D V++DV GV Y+ C T++ L +IG L +R+D + + Sbjct: 1 MIASLRGTVAAVSLDSVVLDVGGVGYLTRCTPGTIAGL-RIGQEAQLATTLVVREDSMTV 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L+Q+ GVG +VA+ +L+ + L ++I + + +PGI K Sbjct: 60 YGFADATERDMFELVQTASGVGPKVALAMLAVLDPDRLRQAIAQADHSTLMSVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + S A P++ AL+ LG+ A A Sbjct: 120 AERIVVELKDRVGLAGS-------------AAPTGAPAWREQVHEALLGLGWPARDAERA 166 Query: 181 VVSVLKKEKN----IADDSQIIRLALRAIS 206 V +V + AD S ++R ALR+++ Sbjct: 167 VDNVAADLADDPGAAADVSTLLRDALRSLA 196 >gi|258545752|ref|ZP_05705986.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC 15826] gi|258518997|gb|EEV87856.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC 15826] Length = 197 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++++ GV Y + P+ L + + G LFV +R D L Sbjct: 1 MIAYLRGTVLVKQAGQIILETGGVGYELAVPLSVLERVHE-GQEAALFVHHAVRDDGHYL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R WF L V G+G ++A+ +LS L +++ Q+S + ++PG+ K Sbjct: 60 YGFHTLEQRSWFRELIRVSGIGPKIALLILSGFDVEMLAQTVRAQDSAALVKLPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL + L + Q I S ++A ALV LGY +A Sbjct: 120 AERLLVELNDRVGRLP-------TAGGAGQGSILRPASARLDAEEALVALGYKPAEAAQL 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V + AD +IR AL+ Sbjct: 173 IERV---GDDDADTDTLIRRALQ 192 >gi|257878807|ref|ZP_05658460.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,230,933] gi|257881445|ref|ZP_05661098.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,502] gi|257885716|ref|ZP_05665369.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,501] gi|257890666|ref|ZP_05670319.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,410] gi|257899427|ref|ZP_05679080.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15] gi|258615122|ref|ZP_05712892.1| Holliday junction DNA helicase RuvA [Enterococcus faecium DO] gi|261207080|ref|ZP_05921769.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6] gi|289565918|ref|ZP_06446358.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF] gi|293556856|ref|ZP_06675417.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039] gi|293563770|ref|ZP_06678209.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162] gi|293570773|ref|ZP_06681823.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980] gi|294614616|ref|ZP_06694520.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636] gi|294618498|ref|ZP_06698062.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679] gi|294621205|ref|ZP_06700390.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317] gi|314938831|ref|ZP_07846102.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a04] gi|314943637|ref|ZP_07850391.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C] gi|314948716|ref|ZP_07852089.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082] gi|314952166|ref|ZP_07855184.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A] gi|314991860|ref|ZP_07857317.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B] gi|314996573|ref|ZP_07861608.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a01] gi|257813035|gb|EEV41793.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,230,933] gi|257817103|gb|EEV44431.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,502] gi|257821572|gb|EEV48702.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,501] gi|257827026|gb|EEV53652.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,410] gi|257837339|gb|EEV62413.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15] gi|260078708|gb|EEW66410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6] gi|289162291|gb|EFD10151.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF] gi|291592518|gb|EFF24123.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636] gi|291595255|gb|EFF26584.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679] gi|291599201|gb|EFF30233.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317] gi|291600940|gb|EFF31231.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039] gi|291604251|gb|EFF33746.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162] gi|291609245|gb|EFF38517.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980] gi|313589262|gb|EFR68107.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a01] gi|313593565|gb|EFR72410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B] gi|313595698|gb|EFR74543.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A] gi|313597674|gb|EFR76519.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C] gi|313641842|gb|EFS06422.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a04] gi|313644888|gb|EFS09468.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082] Length = 200 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++ G+ Y I K+ ++V +R+D L Sbjct: 1 MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + A+ +++ + L++++ + + + PG+ K Sbjct: 60 YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK LS + + A+ AL LGY + Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEANTKDATA-----LSEAMEALSALGYSDREIKRV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + KE + + +R AL+ + Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197 >gi|327475176|gb|AEA77183.1| holliday junction DNA helicase [Exiguobacterium sp. EPVM] Length = 195 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG++ + +Y+ +DV GV Y ++ P + + +F ++R+DQ L Sbjct: 1 MIEFVKGSVAYVCAEYITLDVSGVGYKVHVPNPFFYR--EQDEHVIVFTHHYVREDQQTL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L V G+G + A+ +++ L+++I +N K + + PG+ K Sbjct: 59 YGFRSRRERELFNKLLGVNGIGPKGALAIVASGDMDALIDAIETENEKYLTKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ +LKGK L+ + + + + A ALV LGY + + T Sbjct: 119 AKQMALDLKGKLSELAPDYVPNTGLFAQGASEL-------DEACEALVALGYSEREITRV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + I I+ AL+ + Sbjct: 172 RKEL---NSEILTTDAYIKRALQLL 193 >gi|299148028|ref|ZP_07041091.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23] gi|298514211|gb|EFI38097.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23] Length = 200 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKIMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|329957833|ref|ZP_08298308.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056] gi|328522710|gb|EGF49819.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056] Length = 200 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + T + + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPASAIIDCNGLGYAANISLNTYAAI-QGKKSCKLYIYEAIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + V + A + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTGGMVSG---AADITGPAFTAANAQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK++ N A Q+I+LAL+ + Sbjct: 177 VMAILKEDAN-APVEQVIKLALKRL 200 >gi|194017234|ref|ZP_03055846.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061] gi|194011102|gb|EDW20672.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061] Length = 201 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + YV+I+ GV Y +Y P + + K T++ ++++D L Sbjct: 1 MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINK---HETIYTYHYIKEDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++ +I ++ + + PG+ K Sbjct: 58 YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + ++ +++ + + + A AL LGYG + Sbjct: 118 ARQIILDLKGKLADVVPEMIGNLFN-HEDHIQVETQQTALDEAFEALSVLGYGDREIKK- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +LK+EKN+ D Q ++ AL+ + Sbjct: 176 VLPLLKEEKNLTTD-QYVKKALQKM 199 >gi|257793715|ref|ZP_05642694.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781] gi|258410986|ref|ZP_05681266.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763] gi|258420213|ref|ZP_05683168.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719] gi|258438215|ref|ZP_05689499.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A9299] gi|258443678|ref|ZP_05692017.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115] gi|258446885|ref|ZP_05695039.1| Holliday junction DNA helicase [Staphylococcus aureus A6300] gi|258448799|ref|ZP_05696911.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A6224] gi|295406763|ref|ZP_06816568.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819] gi|297245654|ref|ZP_06929519.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796] gi|257787687|gb|EEV26027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781] gi|257840136|gb|EEV64600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763] gi|257843924|gb|EEV68318.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719] gi|257848259|gb|EEV72250.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A9299] gi|257851084|gb|EEV75027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115] gi|257854460|gb|EEV77409.1| Holliday junction DNA helicase [Staphylococcus aureus A6300] gi|257858077|gb|EEV80966.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A6224] gi|294968510|gb|EFG44534.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819] gi|297177305|gb|EFH36557.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796] Length = 203 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 4 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 63 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 178 VEKTLNKNK-YDSVDEAVKAGLQ 199 >gi|327475180|gb|AEA77185.1| holliday junction DNA helicase [Bacillus sp. 15.4] Length = 202 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 100/205 (48%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G ++ + +YV+++ G+ Y I+ L + T++ H+R+D + L Sbjct: 1 MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKYE-NQEKTIYTYQHVREDILAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ F+ L +V G+G + A+ +L+ +++ +I ++ + + + PG+ K Sbjct: 60 YGFLSMEEKLLFIKLLNVSGIGPKGALAILASGAPEQVITAIEGEDERFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + ++ K++ + + A AL LGY + + Sbjct: 120 ARQMILDLKGKLQDVVPDYFPNLFNEGKQET-VSNNDELIDEAALALKALGYSEREIKRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K ++I+ AL+ + Sbjct: 179 TPKLSSQGK---TTDELIKDALKLL 200 >gi|325853052|ref|ZP_08171201.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS 18C-A] gi|325484426|gb|EGC87347.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS 18C-A] Length = 222 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI I+G + L +++ GV Y + + T S L + L+V T R D Sbjct: 18 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAL-QGKTTVKLYVHEAIMTGGRDD 76 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 77 SYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKGI 136 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 137 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPGTPAVDTAIKDEAVSALTMLGFSPAP 193 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L + ++ Q+++LAL+ I Sbjct: 194 SAKVVVSILTDQPDLP-VEQVVKLALKMI 221 >gi|228993160|ref|ZP_04153082.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus pseudomycoides DSM 12442] gi|228999210|ref|ZP_04158791.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock3-17] gi|229006757|ref|ZP_04164391.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock1-4] gi|228754618|gb|EEM04029.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock1-4] gi|228760555|gb|EEM09520.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock3-17] gi|228766619|gb|EEM15260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus pseudomycoides DSM 12442] Length = 212 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 5/204 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 + G +E + +YV++D G+ Y I+ P + ++ ++R+D + L+ Sbjct: 9 FEYVTGYVEYVGPEYVVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALY 66 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A Sbjct: 67 GFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTA 126 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +++ +LKGK + D+ + + A+ AL LGY + + + V Sbjct: 127 RQMILDLKGKLADVVPDAFVDLFSDVERFDEKKGSSAELDEALEALRALGYAEREVSRVV 186 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +LK+ Q I+ AL + Sbjct: 187 PELLKE---SLTTDQYIKKALSLL 207 >gi|295094803|emb|CBK83894.1| Holliday junction DNA helicase subunit RuvA [Coprococcus sp. ART55/1] Length = 200 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E ++Y++I+ G+ Y + + + L + + ++R+D+I L Sbjct: 1 MISYIRGALEIKGDNYIVIECGGIGYQLMVSGKFMEKLPPVHSEIKVSTYMYIREDEICL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F +L V GVG +VAM +LS +T EL ++I ++ K I++ GI K Sbjct: 61 FGFENADELNVFKILLGVSGVGPKVAMSLLSTLTVNELRLAVISEDVKAISKANGIGAKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K S+ + N A + N ISAL LGY +A A Sbjct: 121 ASRIILELKDKL----SMEDMIDAAYNDSVAVQNAAGDVRTNVISALTALGYSGVEAGRA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D+ Q+++ ALR + Sbjct: 177 VSRV--DGSADMDEEQLLKAALRFM 199 >gi|73662426|ref|YP_301207.1| Holliday junction DNA helicase RuvA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90135921|sp|Q49Y80|RUVA_STAS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72494941|dbj|BAE18262.1| Holliday junction DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 200 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYIKGTLTELNPTHVVVEASGVGYEIQTP-NSYRFQKYMDHEVVVHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ ++ F+ L V G+G + A+ +L+ + ++ +I +N + + PGI K Sbjct: 60 YGFINQEEKDMFLSLIKVTGIGPKSALAILASSSPNDVKIAIENENDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + D S + + A+ AL LGY + + T Sbjct: 120 ARQIVLDLKGKV----QINDVDSSQILNTDTQDHANAPIIKEALLALEALGYSKRELTKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ K+ + DD+ ++ L+ + Sbjct: 176 EKSLSKETFDSVDDA--VKRGLQLL 198 >gi|326575817|gb|EGE25740.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis CO72] Length = 204 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + L IG ++V H+R+D I Sbjct: 1 MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKG+ + + + A + SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGQLNEFGEMHPMTAEGLFNQPADNSML--IIAEVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|302384291|ref|YP_003820114.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides ATCC 15264] gi|302194919|gb|ADL02491.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides ATCC 15264] Length = 205 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E + LID GV Y++ C RTL L GD TL V + +D R Sbjct: 1 MIGRLRGVVAEIEEGHCLIDCAGVGYVVACGARTLGRLPAPGDEATLHVHSQWSEDAGPR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ +R+ F L +QGVG + A+ VL + EL ++ + I + G+ K Sbjct: 61 LYGFLARDERRAFTTLLGIQGVGPKAALSVLDVLPPGELAGAVARDDKAAIGRANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELKGK + V S +PS A+SAL+ LG + A Sbjct: 121 LALRIVTELKGKPL---GDVSFTPSVAGVHAEVAPPVPSVTGEAVSALLGLGVAEVNARR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV L + + A+ S +IR AL+ + Sbjct: 178 AVDQALIRLGDAAELSAVIRAALQEL 203 >gi|329903093|ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] gi|327548502|gb|EGF33171.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] Length = 192 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + + T L +G+ L + +R+D L Sbjct: 1 MIGRLSGTLLEKNPPQLLVDCHGVGYEVGVSMSTFYNLPALGEKIVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + GVG R+A+ +LS ++ EL ++I LQ + + ++PG+ K Sbjct: 61 FGFGTAEERNVFRQLIKIAGVGPRMALAILSGMSVAELAQAITLQETGRLTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + + + ++P + + ++AL+ LGY +A A Sbjct: 121 AER------------LLLELKGKLGADLGIVGGVALPDGSGDILNALLALGYSDKEAMLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V + S I+LAL+A+S Sbjct: 169 MKQV----PAGSGVSDGIKLALKALS 190 >gi|257068561|ref|YP_003154816.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium faecium DSM 4810] gi|256559379|gb|ACU85226.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium faecium DSM 4810] Length = 205 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D ++++V G+ Y++ + LS + G TL E +R+D + L Sbjct: 1 MIASLTGRVARIDLDSLVLEVGGIGYLVRTTPQALSA-TRHGAELTLHTELVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F ++QSV G+G R A+ VL+ + EL ++ Q++K I + PGI K+ Sbjct: 60 FGFPQLEEAETFRIVQSVSGIGPRTALAVLAVLEPEELRRAVAEQDAKTITRTPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL GK + +S+ + + A + + ALV LG+ + A A Sbjct: 120 AGRMLLELGGKLPAPASLSAVPGTPAAEAPATPSGAD---ADVVEALVGLGWAEKAALKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S + D ++++R ALR + Sbjct: 177 VESARADDGAELDSAELLRRALRGL 201 >gi|323344791|ref|ZP_08085015.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella oralis ATCC 33269] gi|323094061|gb|EFZ36638.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella oralis ATCC 33269] Length = 204 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI I+G + L +++V G+ Y + + T S + + + L+V T R D Sbjct: 1 MIEYIRGELAELTPALAVVEVAGIGYALSISLNTYSAI-QGKEKVKLYVHEALVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R+ + LL +V GVGA A +LS I+ EL I + +++ + GI Sbjct: 60 SFTLYGFASKQERELYRLLITVSGVGANTARMILSTISPAELCNVIANGDERMLKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K ++ + +S + A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIVNSGIATELHVSS----EPAAMVNNGIKDEAVSALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + AV +LK + ++ Q+++LAL+ I Sbjct: 176 SAKAVTEILKADPDLP-VEQVVKLALKQI 203 >gi|15924632|ref|NP_372166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Mu50] gi|15927222|ref|NP_374755.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus N315] gi|21283321|ref|NP_646409.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MW2] gi|49486475|ref|YP_043696.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MSSA476] gi|148268122|ref|YP_001247065.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus JH9] gi|150394190|ref|YP_001316865.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus JH1] gi|156979960|ref|YP_001442219.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Mu3] gi|253317207|ref|ZP_04840420.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006427|ref|ZP_05145028.2| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258453755|ref|ZP_05701730.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937] gi|269203267|ref|YP_003282536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ED98] gi|282893146|ref|ZP_06301380.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117] gi|282928277|ref|ZP_06335882.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102] gi|296275927|ref|ZP_06858434.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MR1] gi|297207637|ref|ZP_06924072.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911720|ref|ZP_07129163.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH70] gi|54039574|sp|P66749|RUVA_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54039575|sp|P66750|RUVA_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042203|sp|P66748|RUVA_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56749510|sp|Q6G8S7|RUVA_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200268|sp|A7X358|RUVA_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045773|sp|A6U2B0|RUVA_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045774|sp|A5ITG6|RUVA_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13701440|dbj|BAB42734.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|14247414|dbj|BAB57804.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|21204761|dbj|BAB95457.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49244918|emb|CAG43379.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MSSA476] gi|147741191|gb|ABQ49489.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus subsp. aureus JH9] gi|149946642|gb|ABR52578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus JH1] gi|156722095|dbj|BAF78512.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|257864075|gb|EEV86828.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937] gi|262075557|gb|ACY11530.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ED98] gi|282590084|gb|EFB95166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102] gi|282764464|gb|EFC04590.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117] gi|285817324|gb|ADC37811.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus 04-02981] gi|296887654|gb|EFH26552.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885966|gb|EFK81168.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH70] gi|312830028|emb|CBX34870.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129927|gb|EFT85917.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus CGS03] gi|329727620|gb|EGG64076.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 21172] Length = 200 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196 >gi|227550815|ref|ZP_03980864.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330] gi|257887929|ref|ZP_05667582.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,141,733] gi|257893270|ref|ZP_05672923.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,408] gi|257896453|ref|ZP_05676106.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12] gi|293377530|ref|ZP_06623725.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1] gi|227180052|gb|EEI61024.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330] gi|257823983|gb|EEV50915.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,141,733] gi|257829649|gb|EEV56256.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,408] gi|257833018|gb|EEV59439.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12] gi|292643845|gb|EFF61960.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1] Length = 200 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++ G+ Y I K+ ++V +R+D L Sbjct: 1 MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + A+ +++ + L++++ + + + PG+ K Sbjct: 60 YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK LS + + A+ AL LGY + Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLF-----DEATTKDATALSEAMEALSALGYSDREIKRV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + KE + + +R AL+ + Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197 >gi|166712990|ref|ZP_02244197.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|289661899|ref|ZP_06483480.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669612|ref|ZP_06490687.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 194 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY A Sbjct: 121 AERMVVELRDRAADFSSGAPITGQL----------GPDAISEATVALQQLGYKP---AEA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + +IR AL+A Sbjct: 168 ARMAREAGAEGDEVATVIRKALQA 191 >gi|284032305|ref|YP_003382236.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836] gi|283811598|gb|ADB33437.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836] Length = 199 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D +I+V GV ++C TL+ L + G + +R+D + L Sbjct: 1 MIAFVRGPVAAIGVDSAVIEVGGVGMQVFCHPGTLAGL-RPGQEARVATSMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D ++ F LL + GVG ++A L+ ++ +L +++ ++ ++ ++PGI K Sbjct: 60 YGFADDDEKSLFELLLTASGVGPKLAQAALAVLSPDQLRQAVASEDLAMLVKVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + S +V + + ++ + LV LG+ A A Sbjct: 120 AQRVVLELKDKIGAPSKMVAG---------RPLQATEAWKDQVQAGLVGLGWSARDAEDA 170 Query: 181 VVSVLK-KEKNIADDSQIIRLALRAIS 206 VV+V + ++R ALR +S Sbjct: 171 VVAVSPLAAEGEPSVPDLLRAALRVLS 197 >gi|120612876|ref|YP_972554.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1] gi|166229622|sp|A1TUZ2|RUVA_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120591340|gb|ABM34780.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1] Length = 190 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G+ L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ A + + + AL+ LGY + T A Sbjct: 121 AER-------------LLLELKGKLGVDIGARPEAANDAQADILQALLALGYNDKEGTAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK S+ I+LAL+A++ Sbjct: 168 ----LKALPKDVGVSEGIKLALKALA 189 >gi|326318908|ref|YP_004236580.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375744|gb|ADX48013.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 190 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G+ L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ A + + + AL+ LGY + +A Sbjct: 121 AER-------------LLLELKGKLGVDIGARPEAANDAQADILQALLALGYNDREGASA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK S+ I+LAL+A++ Sbjct: 168 ----LKALPKDVGVSEGIKLALKALA 189 >gi|182418560|ref|ZP_02949841.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521] gi|237668331|ref|ZP_04528315.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377563|gb|EDT75114.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521] gi|237656679|gb|EEP54235.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 200 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DY++++ G+ Y I+ T+S + + G+ L+V+ +R+D I L Sbjct: 1 MYEYIKGKYMGMNKDYIVVENSGIGYKIFTSGATMSSVPECGEEVILYVDQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F LL +V GVG + A+ +LS L +I+ + K I + GI K Sbjct: 61 YGFDSKEELAMFKLLLTVNGVGPKAALSLLSISRLNNLKYAIMTGDEKHICRGVGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K + D++ + + + + +SAL+ LGY + ++ Sbjct: 121 AARIILELKDKLQPDELL---DVAVDSNKDNNGENNLMAVSEVLSALIALGYSEKESEKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K E +I+ AL+A+ Sbjct: 178 LKTIDKTE----TVENMIKNALKAL 198 >gi|83943911|ref|ZP_00956368.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. EE-36] gi|83845158|gb|EAP83038.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. EE-36] Length = 222 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D++LIDV+GV Y++YC RT++ L +G+ LF + +R+D ++L Sbjct: 1 MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + + +I L + + G+ KI Sbjct: 61 FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--------------ICSMPSFAINAISA 166 A R++ +LK KA + ++ + +A S A+SA Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEATAEVIETAAPKRRPVAPPNQSAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG A A V+ E AD Q+IR AL+ ++ Sbjct: 181 LGNLGYGPGDAAGA-VAQAAGEMPEADTPQLIRAALKLLA 219 >gi|138896159|ref|YP_001126612.1| Holliday junction DNA helicase RuvA [Geobacillus thermodenitrificans NG80-2] gi|166230554|sp|A4IRB3|RUVA_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134267672|gb|ABO67867.1| Holliday junction DNA helicase RuvA [Geobacillus thermodenitrificans NG80-2] Length = 194 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P + T++ ++R+D L Sbjct: 1 MIEFIRGYVDYICPEYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK S + S+ AI+AL LGY + + Sbjct: 120 ARQMILDLKGKLTMFS---------MPTAPRPAASLSGELAEAIAALKALGYAEREIEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ Q ++ AL + Sbjct: 171 IPALREE---TMSTEQYVKRALAML 192 >gi|297155806|gb|ADI05518.1| Holliday junction DNA helicase RuvA [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 17/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGPIAAVGPDIAVVEVGGVGMAVQCTPNTLSGL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQIFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKSLTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + V + P ++ +ALV LGY +A A Sbjct: 120 AQRLLLELKDRLGE----------PVGRPAGPAAPAPGWSDQLHTALVGLGYAPREAEDA 169 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + +Q++R AL+ ++ Sbjct: 170 VAAVTPQAEAAVAAGGSPQVAQLLRAALQTLN 201 >gi|281422792|ref|ZP_06253791.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205] gi|281403160|gb|EFB33840.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205] Length = 204 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI I G++ L +++ GV Y + + T + + + L+V + R D Sbjct: 1 MIEYIHGDLTELTPALAVVETAGVGYGLNISLNTYTAI-QGKQEVKLYVHEVLVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF + +R+ + LL +V GVG A +LS ++ EL E I N K++ + GI Sbjct: 60 SFTLFGFATKQERELYRLLITVSGVGGNTARMILSSLSPRELCEIISTGNDKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K +SL + S N + A+SAL LG+ Sbjct: 120 GLKTAQRIIIDLKDKIVSLGIADELPASGGN----VVMVNNDVKDEAVSALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +LK + ++ Q+++LAL+ I Sbjct: 176 SAKVVVDILKAQPDLP-VEQVVKLALKQI 203 >gi|325068881|ref|ZP_08127554.1| Holliday junction DNA helicase subunit RuvA [Actinomyces oris K20] Length = 217 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 8/212 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L ++G+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEEALVHTEMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ++ K ++ + P + ++ALV LG+ + Sbjct: 120 AQRVILDVADKLGPVTGDDLGAAGTTAQTAPGMEVVAAGGPEPHADVVAALVQLGWNEAS 179 Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAI 205 A AV SV + D + ++R +LR + Sbjct: 180 ARQAVASVTADAADGGQEPDMAAVLRASLRWL 211 >gi|153809430|ref|ZP_01962098.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185] gi|149128016|gb|EDM19238.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185] Length = 201 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +ID GV Y + T S + + C LF+ +R+D L Sbjct: 1 MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKTCKLFIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQEREIFLLLISVSGIGGNTARMILSALSPSELVSVISAENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + A++AL LG+ + Sbjct: 120 AQRLIVELKDKIKTVGMAAVGGTTSAG--MLLQSANAEVQEEAVAALTMLGFAAAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V++VLK+E A ++I+LAL+ + Sbjct: 178 VLAVLKEEPE-APVEKVIKLALKRL 201 >gi|196250113|ref|ZP_03148807.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16] gi|196210297|gb|EDY05062.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16] Length = 194 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + Y++ID G+ Y I+ P + T++ ++R+D L Sbjct: 1 MIEFIRGYVDYICPQYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK S + S+ AI+AL LGY + + Sbjct: 120 ARQMILDLKGKLTMFS---------MPTAPQPAASLSGELAEAIAALKALGYAEREIEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ Q ++ AL + Sbjct: 171 IPALREE---TMSTEQYVKRALAML 192 >gi|28198789|ref|NP_779103.1| Holliday junction DNA helicase motor protein [Xylella fastidiosa Temecula1] gi|182681488|ref|YP_001829648.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23] gi|32130012|sp|Q87D02|RUVA_XYLFT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560141|sp|B2I4S9|RUVA_XYLF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28056880|gb|AAO28752.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa Temecula1] gi|182631598|gb|ACB92374.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23] gi|307579942|gb|ADN63911.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 194 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L +G LF + D L Sbjct: 1 MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R+ F LQ V G+G ++A+ +LS ++ I ++ + IPG+ K Sbjct: 61 YGFLSESERRLFRHLQRVSGIGTKIALAILSSVSVDTFAGLIQAGDANALTVIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A ++ + A AL LGY +A Sbjct: 121 AERMLVELRDRAADFNNGISTSGKL----------NLDTVSEAALALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 D + +I+ AL+ Sbjct: 171 ARDA---GTESDDVAIVIKKALQ 190 >gi|139438977|ref|ZP_01772437.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC 25986] gi|133775688|gb|EBA39508.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC 25986] Length = 206 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++DV GV + + T + L G L+ +R+D + L Sbjct: 1 MISQLHGTLVEATMSSAVVDVSGVGFELGISGSTAATLPTPGGEVRLYTRMQVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV GVG R+A+ VLS T +L ++ ++ K +A++PG+ K Sbjct: 61 FGFASKDERTMFDRLVSVSGVGPRLALAVLSTYTVGQLYSLVMAEDDKGMAKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK V D + PS +A +AL+++G+ + A Sbjct: 121 AQRLILELKSTFAKDKGFVPVDAIPGQVAMPVPAAAPSAIDDARAALLSMGFSPQETDVA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ AL+ + Sbjct: 181 LS---GYDGQDMRVEDLLGAALKRL 202 >gi|91203074|emb|CAJ72713.1| strongly similar to DNA helicase RuvA [Candidatus Kuenenia stuttgartiensis] Length = 196 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 112/203 (55%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + ++++V GV Y+++ PI T + G+ T+ + +R+D I+L Sbjct: 1 MLDYIRGQVISKSPTKLVLEVAGVGYLLHIPISTFEKIPSRGE-VTIHTQLFLREDGIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R F LL SV GVG +A+ +LS TA ++ +I +++K + +I G+ K Sbjct: 60 FGFASDEERGLFQLLLSVNGVGPTMAIAILSGSTANDIKCAIAREDTKALMRIKGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + +M + +FA +AI AL++LGYG+ A A Sbjct: 120 AERIVLELKESVKGAKASIDIEMDGRQR---------AFADDAIMALISLGYGRPVAENA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V +KK ++ + ++R AL+ Sbjct: 171 VKEAVKKLNSVDNIEVLVREALK 193 >gi|295839916|ref|ZP_06826849.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74] gi|197696745|gb|EDY43678.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74] Length = 206 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V G+ + C TLS L +IG+ + +R+D + L Sbjct: 1 MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ ++ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + ++ + +ALV LGY +A A Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPAPWTEQLHNALVGLGYQPREAEEA 174 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + + ++R AL+ ++ Sbjct: 175 VEAVTPQAEAQEGVPEIGPLLRAALQTLN 203 >gi|194468325|ref|ZP_03074311.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23] gi|194453178|gb|EDX42076.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23] Length = 199 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y+++DV GV Y + ++V +R+D I L Sbjct: 1 MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVRVYVYQAVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFTDQNEKNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+ K + SS + A ++ S +A+ AL LGY + Sbjct: 120 ASQIVLDLRDKLTNESS----SSLFATTQLAVDTTVNSELKDALEALAALGYKERDIKKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +++K+E+ D + +R ALR ++ Sbjct: 176 QKTLMKEEQMATD--EYLRQALRLLN 199 >gi|329938965|ref|ZP_08288339.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus M045] gi|329301850|gb|EGG45743.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus M045] Length = 201 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDTAVLEVGGVGMAVQCTPNTLSTL-RLGRPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADEDERQVFELLQTASGVGPRLAQAMLAVHSPDALRRAVSTGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PLGAPAVGAPAGQGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + Q ++R AL+ ++ Sbjct: 170 VAAVTPQAEAAEGTPQVGPLLRAALQTLN 198 >gi|269941127|emb|CBI49513.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus TW20] Length = 200 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 HGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQ 196 >gi|158320755|ref|YP_001513262.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii OhILAs] gi|167012655|sp|A8MHI4|RUVA_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158140954|gb|ABW19266.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii OhILAs] Length = 194 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + D ++++V G+ Y I+ I ++S + K GD T++ +R+D++ L Sbjct: 1 MFEYLKGTVADILIDKIIVEVNGIGYRIHSTIHSVSQI-KKGDAITVYTHLVVREDELSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S + F L SV +G +VA G+LS T +L I+ ++ +++ PG+ K Sbjct: 60 YGFMSIEELDMFQKLISVSKIGPKVASGILSAYTPNKLSAYILSKDISALSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V + + + A+ AL+ LGY + ++ A Sbjct: 120 AERIILELKDKVDKTNVVYDYTLFNDDHKDD---------DEAVQALMALGYSKLESEKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V +I+ AL+ + Sbjct: 171 VEAVR---DMSLGTEDVIKRALKWL 192 >gi|315640091|ref|ZP_07895215.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus italicus DSM 15952] gi|315484154|gb|EFU74626.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus italicus DSM 15952] Length = 200 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y + GK + ++V +R+D L Sbjct: 1 MYEFIKGVVADIQPSYIVLEANGIGYQLVM-GNPYRYSGKKTEEVKVYVHLIVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F+ L SV G+G + A+ +++ L+ +I + + + PG+ K Sbjct: 60 YGFEKLQEKLLFLRLISVSGIGPKSAIAIMANDDHEGLIAAIESDDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L+ + +++ + + S AISAL LGY + + Sbjct: 120 AQQMILDLKGKLGELAGELTGNLAMPLFD-----TDTSALTEAISALSALGYSEREIKR- 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + LKKE + D + +R AL+ + Sbjct: 174 VETTLKKEGAHSTD-EYLRKALKLL 197 >gi|317496792|ref|ZP_07955122.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 5_1_63FAA] gi|316895804|gb|EFV17956.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 5_1_63FAA] Length = 201 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG +E + V++D G+ Y + P+R S KIG ++ H+R+D + L Sbjct: 1 MISYIKGILEDMSPGMVVVDNHGIGYQMMVPMRGESF-PKIGQEIKIYTHMHVREDDVSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS +++ F LL V G+G +V + VLS ++ EL ++I ++ K I++ PG+ K Sbjct: 60 FGFLSKEEKEAFELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K S + + + + + S I LV+LGY + +A A Sbjct: 120 AKKLILELKDKL-SFEELEEDGVGAEIFDTSADSSDSVMIT--IEGLVSLGYSKSEAAIA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V ++ ++++ AL+ I Sbjct: 177 VNKV--EDAKDLTPEELLKKALKNI 199 >gi|187935379|ref|YP_001885221.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str. Eklund 17B] gi|229560022|sp|B2TMZ1|RUVA_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187723532|gb|ACD24753.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str. Eklund 17B] Length = 198 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DY++I+ G+ Y I+ T+S + G+ L++E +R+D I L Sbjct: 1 MYEYIKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKLYIEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + + F +L S+ GVGA+ A+ +LS L +II + K + + GI K Sbjct: 61 YGFESLEELEMFKMLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGVGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K + + ++C+++ A+SAL++LGY + +A Sbjct: 121 AARIILELKDKLKT-----DELLNCIDEFDDVTQDNSLAVSEALSALISLGYTEKEAEKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K E II+ AL + Sbjct: 176 LRDVDKSE----SVENIIKSALVKL 196 >gi|288801343|ref|ZP_06406797.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299 str. F0039] gi|288331726|gb|EFC70210.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299 str. F0039] Length = 204 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG++ + +I+ GV Y + + T S + + + L+V T R D Sbjct: 1 MIEYIKGDLAEITPALAVIETAGVGYALNISLTTYSAI-QGKEEVKLYVHEALVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R+ + LL +V GVGA A +LS I+ EL I + +++ + GI Sbjct: 60 SYTLYGFATKQERELYRLLITVSGVGANTARMILSSISPAELCNVIASGDERMLKSVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K LSS + + N A I S + A+ AL LG+ Sbjct: 120 GLKTAQRIIVDLKDKI--LSSGIATEFKVGNDSNATIDS--AVKDEAVGALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V +LK E + Q+++LAL+ I Sbjct: 176 SAKVVSEILKNEPTLP-VEQVVKLALKQI 203 >gi|16079826|ref|NP_390652.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. 168] gi|221310713|ref|ZP_03592560.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. 168] gi|221315037|ref|ZP_03596842.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319958|ref|ZP_03601252.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. JH642] gi|221324239|ref|ZP_03605533.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. SMY] gi|321312303|ref|YP_004204590.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5] gi|3183558|sp|O05392|RUVA_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2635239|emb|CAB14734.1| Holliday junction DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|6977805|emb|CAB75330.1| RuvA protein [Bacillus subtilis subsp. subtilis str. 168] gi|291485185|dbj|BAI86260.1| Holliday junction DNA helicase motor protein [Bacillus subtilis subsp. natto BEST195] gi|320018577|gb|ADV93563.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5] Length = 201 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERSQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L ++++I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + +++ ++E+ + + A+ AL LGY + + Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFN-HEERLEKQTAETALEEALEALRVLGYAEKEIKK- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ LK+E + D Q ++ AL+ + Sbjct: 176 VLPHLKEEIGLTTD-QYVKKALQKL 199 >gi|150016408|ref|YP_001308662.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB 8052] gi|189045748|sp|A6LTM6|RUVA_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149902873|gb|ABR33706.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB 8052] Length = 198 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DYV+++ G+ Y I+ T+S + K G+ L++E +R+D I L Sbjct: 1 MYEYIKGKYIGINKDYVIVENSGIGYKIFTSGATMSSMPKNGEEIMLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + + F LL +V GVG + A+ +LS L +I++ + K I + GI K Sbjct: 61 YGFDSKEELEMFKLLLTVSGVGPKAALSLLSISRVNNLKYAIMIGDEKHICRGVGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ E+K K +V + K+ ++ ++ A+SAL+ LGY + +A + Sbjct: 121 AARIILEIKDKL-KPDELVDSSLEIDTKDNENVMALS----EALSALIALGYSEKEAESV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K + II+ AL+A+ Sbjct: 176 LKKIDKND----SVENIIKNALKAL 196 >gi|282878437|ref|ZP_06287223.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC 35310] gi|281299423|gb|EFA91806.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC 35310] Length = 204 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI I+G + L +++ GV Y + + T S + + L+V T R D Sbjct: 1 MIEYIRGELTELTPALAVLEAAGVGYGLNISLNTYSAI-QGKKEVKLYVHESLVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 +GF S +R+ + LL +V GVGA A +LS ++ EL I + +++ + GI Sbjct: 60 NFTFYGFFSKQERELYRLLITVSGVGANTARMILSTLSPAELCNVIANGDERMLKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +L+ K +S + +S + S A+SAL LG+ Sbjct: 120 GLKTAQRIIVDLRDKIVSSGIATELHVSS----EPATAVDASIRDEAVSALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V +LK + ++ Q+++LAL+ I Sbjct: 176 SAKVVEGILKSDPSLP-VEQVVKLALKQI 203 >gi|255691218|ref|ZP_05414893.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM 17565] gi|260623130|gb|EEX46001.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM 17565] Length = 201 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKTCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ + + + A++AL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGASAAGGSAVGG--MLLQAANAEVQEEAVAALTMLGFAAAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E A ++I+LAL+ + Sbjct: 178 VLAILKEEPE-APVEKVIKLALKRL 201 >gi|194333233|ref|YP_002015093.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM 271] gi|229560116|sp|B4S4U8|RUVA_PROA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194311051|gb|ACF45446.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM 271] Length = 200 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D ++DV GV Y + T L GD L H+++D ++L Sbjct: 1 MYAYFRGELISSSRDNAIVDVGGVAYRLLISNSTYRQLPSSGDQVKLLAHLHVKEDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + +RQ F+LL S+ GVG ++A+ +LS + E+ E+I+ + + I G+ K Sbjct: 61 YGFIEEEERQLFLLLLSISGVGPKLALAILSGLPVEEIQEAIMANKPETLFGISGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + L + S+ S + +A+ AL+ LG+ + A A Sbjct: 121 AARIILELRDRILKLQQTRPGKTAGAG-------SVASLSEDALQALMTLGFSRASAQQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L +N I+R AL+ I Sbjct: 174 VTRALLSAEN-PGVEDIVREALQNI 197 >gi|288803240|ref|ZP_06408674.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18] gi|288334281|gb|EFC72722.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18] Length = 205 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI I+G + L +++ GV Y + + T S + + L+V T R D Sbjct: 1 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 60 NYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPNTPTVNTAIKDEAVSALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L ++ ++ Q+++LAL+ I Sbjct: 177 SAKVVVSILAEQPDLP-VEQVVKLALKMI 204 >gi|148261887|ref|YP_001236014.1| Holliday junction DNA helicase RuvA [Acidiphilium cryptum JF-5] gi|326405391|ref|YP_004285473.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium multivorum AIU301] gi|166229624|sp|A5G2L3|RUVA_ACICJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146403568|gb|ABQ32095.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum JF-5] gi|325052253|dbj|BAJ82591.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium multivorum AIU301] Length = 204 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G E + + LIDV GV Y+++C R+L+ L TL VET +R+D I L Sbjct: 1 MIGRLCGTAEQIEDGRCLIDVSGVGYVVFCSARSLAALPAPPARATLLVETQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R WF LL ++QGVGA+VA+ +LS + +L +I + I + PG+ K+ Sbjct: 61 FGFIDAAERDWFRLLTTIQGVGAKVALNLLSALPPDQLASAIAASDRGAITRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R+++EL+ + ++ + + +A+SALVNLGY + +A A Sbjct: 121 AARLISELRERIAAMPT---GSAFIPTGTAPPVAPPQGKLADALSALVNLGYRRAEAEAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V + A ++IR LR ++ Sbjct: 178 LSAVQAEAGEDAALDELIRGGLRRLA 203 >gi|257866610|ref|ZP_05646263.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC30] gi|257872874|ref|ZP_05652527.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC10] gi|257800568|gb|EEV29596.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC30] gi|257807038|gb|EEV35860.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC10] Length = 196 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + ++ Y++++ G+ Y I S GK+ +++ +R+D L Sbjct: 1 MYEYIIGKVTDIFPAYIVVETHGIGYQIAF-GNPYSFSGKLNQEVKIYLHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +Q F+ L SV G+G + A+ +++ T L+ ++ + + + PG+ K Sbjct: 60 YGFATIEGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L + + + A+ AL LGY + + A Sbjct: 120 AQQMILDLKGKVAELVG---------EEAIVPLSVATTALDEAMEALKALGYSEKEVKKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E + +R ALR + Sbjct: 171 EKQLA--ENTTKSTDEYLREALRLM 193 >gi|163745818|ref|ZP_02153177.1| Holliday junction DNA helicase motor protein [Oceanibulbus indolifex HEL-45] gi|161380563|gb|EDQ04973.1| Holliday junction DNA helicase motor protein [Oceanibulbus indolifex HEL-45] Length = 225 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 18/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ D+VLIDV+GV Y++Y RT++ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKLSGRIDYRAADHVLIDVRGVGYLVYVSDRTMAALPSVGEVVALYTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I L + + GI KI Sbjct: 61 FGFQTLVEKEWHRLLTSVQGVGAKASLAILGTLGPDGVSRAIALGDWNAVKAAKGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-----------------HICSMPSFAINA 163 A R++ +LK KA + ++ + + +A S A Sbjct: 121 AQRVVLDLKDKAPGVMAMTGTVADAMGEAEAAADESVIEAATPRRAPKPAAPNASAQSEA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A A V+ E AD +IR AL+ ++ Sbjct: 181 LSALGNLGYGPGDAAGA-VAQAAGEMPDADTPTLIRAALKLLA 222 >gi|56963319|ref|YP_175050.1| Holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16] gi|81366439|sp|Q5WHR6|RUVA_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56909562|dbj|BAD64089.1| holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16] Length = 199 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKGN+ + Y++++ G+ + IYC + + + ++R+D RL Sbjct: 1 MIDYIKGNLVAVEPAYLVVEANGIGFQIYC-ANPYRFINDLNREVVVPTHHYVREDSQRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L +V G+G + A+ +L+ +++ +I ++ ++ + PG+ K Sbjct: 60 FGFTTRTERLLFEKLLNVSGIGPKGALAILASGEPEDIIHAIEQEDEALLVRFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +++ +++ +A+ AL LGY + + Sbjct: 120 ARQIILDLKGKLDDMAPMLEPAAGADKQQK------NPQLEDALEALRALGYVEKE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V LK E + + IR AL + Sbjct: 173 VEKQLKAE--TLETDEYIRRALALM 195 >gi|319400968|gb|EFV89187.1| holliday junction DNA helicase RuvA [Staphylococcus epidermidis FRI909] Length = 200 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ G+ Y I P + + ++ +R+D L Sbjct: 1 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + Q PGI K Sbjct: 60 YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +++ + + Q + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKV----TITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELSKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ K N D++ +++ L+ + Sbjct: 176 EKSLNKHNVNSVDEA--VKIGLQTL 198 >gi|157964465|ref|YP_001499289.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5] gi|157844241|gb|ABV84742.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5] Length = 212 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 123/203 (60%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 9 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 67 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 68 YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 127 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK +SS + + P + I ALVNLG+ + +A A Sbjct: 128 AERVVLELKGKVAKISS----GSAIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQNA 183 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 184 VQGIITQNPEISID-ELIKTALK 205 >gi|149277483|ref|ZP_01883624.1| Holliday junction DNA helicase [Pedobacter sp. BAL39] gi|149231716|gb|EDM37094.1| Holliday junction DNA helicase [Pedobacter sp. BAL39] Length = 194 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + Y++++ G+ Y I + T S LG + + C ++ H+++D L Sbjct: 1 MFEYIDGRLSFKCPAYIVVEAGGIGYHINISLNTYSLLGDM-ERCKIYTWLHVKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L SV G+GA A +LS IT E+ +I+ + +I +I GI K Sbjct: 60 YGFAEEGERRLFLHLISVSGIGANTARMMLSSITPIEIQTAIVNGDLPLIQRIKGIGAKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S + A+SAL+ LG+ + A A Sbjct: 120 AQRLVLELQDKLKKEGS----------GSLIAAPLNHTVREEALSALMMLGFAKQPAEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +K Q+I++AL+ + Sbjct: 170 LDNAVKTGGVELSVEQMIKIALKNL 194 >gi|91205752|ref|YP_538107.1| Holliday junction DNA helicase motor protein [Rickettsia bellii RML369-C] gi|122990902|sp|Q1RHZ6|RUVA_RICBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91069296|gb|ABE05018.1| Holliday junction DNA helicase RuvA [Rickettsia bellii RML369-C] Length = 203 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ Y+DYV+IDV GV Y ++ +TLS L + G+ LF+ETH+R+D I L Sbjct: 1 MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ +F LLQSV G+G R+A+ +LS +T T++ +I ++ + I G+ K+ Sbjct: 60 YGFLSLEEKSFFNLLQSVNGIGTRMALSILSTLTPTDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL K +SS + + P + I AL+N+G+ + +A A Sbjct: 120 AERIVRELSDKVAKISS----SSAAIKDSLNIKGITPVASSEVIKALINMGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ K I+ D ++IR AL+ Sbjct: 176 VQEIITKNPEISID-ELIRTALK 197 >gi|332978537|gb|EGK15246.1| crossover junction ATP-dependent DNA helicase RuvA [Psychrobacter sp. 1501(2011)] Length = 210 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 4/210 (1%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + L I GV Y + P+ L ++ +++ H+R+D Sbjct: 1 MIGSIEGRVCHLAAPVACIMTASGVGYEVELPLPDFCQL-QLDATVSVWTHLHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R F L + GVGA++A+ ++S ++A EL +++ N + ++PGI K Sbjct: 60 LYGFIKHQERDVFRQLIRINGVGAKMALAMMSTMSAPELKQAVETDNDVALTRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK ++ + + S SAL++LGY +A Sbjct: 120 TAQRLLIELKGKFDNIETSGGLFEEQGGATISLAGSEGVILAEVESALISLGYRDKEAQR 179 Query: 180 AVVSVLKKEKN--IADDSQIIRLALRAISC 207 A+ + + E I D +++L L+ +S Sbjct: 180 AIKAARETEAGQTIVDTQSLLKLTLQQLSS 209 >gi|224476739|ref|YP_002634345.1| Holliday junction DNA helicase RuvA [Staphylococcus carnosus subsp. carnosus TM300] gi|254767387|sp|B9DNE5|RUVA_STACT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222421346|emb|CAL28160.1| holliday junction DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 201 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ GV Y I P + T++ +R+D L Sbjct: 1 MYAYIKGKLSQLFPTHVVVETNGVGYEIQTP-NSYRFQQYYQQEVTIYTSLVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F+ L V G+G + A+ +L+ T E+ I +N + + PGI K Sbjct: 60 YGFMSEEEKGMFLSLNKVTGIGPKSALAILAASTPNEVKIGIENENETYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + +N E + A+ AL LGY + + Sbjct: 120 ARQIILDLKGKV---QITEENPETLLNFEGSESNQTSPILDEALLALEALGYSKRELNKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ + ++ L+ + Sbjct: 177 EKKL--QAESYTSVDEAVKAGLKIL 199 >gi|325278890|ref|YP_004251432.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter splanchnicus DSM 20712] gi|324310699|gb|ADY31252.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter splanchnicus DSM 20712] Length = 193 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + Y +I+ GV Y I + T S + + +L++ +R+D + L Sbjct: 1 MYEYIKGLLVEATPAYAVIECGGVGYYINISVNTYSQIVAL-QQVSLYIHQIVREDALLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV G+GA A +LS +T E+ +I+ +N I + GI +K Sbjct: 60 YGFFNKEERTVFRQLISVSGIGANTASVMLSSMTVKEIAGAILTENVNAIKSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K S E+ + + + A++ALV LG+ + QA Sbjct: 120 AQRVIIELKDKIAVTGS----------AEEMNFGASVAIKEEALAALVMLGFVKAQANKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + ++I+ AL+ + Sbjct: 170 LDKIMA-GGGVTSVEELIKQALKQL 193 >gi|54025666|ref|YP_119908.1| Holliday junction DNA helicase RuvA [Nocardia farcinica IFM 10152] gi|81374258|sp|Q5YTE7|RUVA_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54017174|dbj|BAD58544.1| putative Holliday junction DNA helicase B subunit [Nocardia farcinica IFM 10152] Length = 201 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++ GV Y + TL+ L + G L+ +R+D + L Sbjct: 1 MIASVRGEVLEIALDHVVVEAAGVGYRLNATPSTLATLTR-GAEARLYTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM VL+ + L +++ N + ++PGI + Sbjct: 60 YGFADTEARDLFGLLQTVSGVGPRLAMAVLAVLEPEALRKALAESNVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + + AL LG+ QA A Sbjct: 120 AERMVVELRDKVNLVP------VQAGPPGSTPAVAATPVREQVVEALTGLGFPLKQAEQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +VL ++ AD S +R AL + Sbjct: 174 LDTVLAEQP-AADTSTALRAALSLL 197 >gi|25028330|ref|NP_738384.1| Holliday junction DNA helicase motor protein [Corynebacterium efficiens YS-314] gi|259507385|ref|ZP_05750285.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens YS-314] gi|29336725|sp|Q8FPK4|RUVA_COREF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|23493615|dbj|BAC18584.1| holliday junction DNA-helicase RuvA [Corynebacterium efficiens YS-314] gi|259165010|gb|EEW49564.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens YS-314] Length = 204 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 3/194 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ QGV Y + TL+ L + G+ TL +R+D ++L Sbjct: 1 MIASLRGTVISIGLGTAVIECQGVGYEVTTTPTTLARLQR-GEEATLLTTMVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D R+ F LLQ+V G+G R+A+ S +T E+ ++I ++K + ++PG+ ++ Sbjct: 60 YGFIDDQSREMFALLQTVTGLGPRLALACESVLTPLEIAQAIAGGDAKTLQRVPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + V D + Q + + AL LG+ + QA A Sbjct: 120 ADRLIVELKDKVAAYTVGVVDDGAPTAPTQGVAPVVVVDQV--TQALTGLGFTEKQADDA 177 Query: 181 VVSVLKKEKNIADD 194 V +VL + + Sbjct: 178 VAAVLSADPGLDTS 191 >gi|84496343|ref|ZP_00995197.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649] gi|84383111|gb|EAP98992.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649] Length = 201 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D V+I+V GV +++ RT + ++G T+ +R+D + L Sbjct: 1 MIASLSGRVAHVGLDRVVIEVGGVGMLVHTTPRTAGEV-RMGQDVTVSTTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F +Q+V GVG R+A+ +LS +T + ++ + + +IPG+ K Sbjct: 60 FGFGSPSERDMFETVQTVSGVGPRLALAMLSVLTPDAVSAALRAGDLATLTKIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K S D++ + ALV LG+ QAT A Sbjct: 120 AERLVLELKDKVGMPSGSPGADVTPSAASLGD-----AKRDQVAEALVGLGWSAKQATDA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V SV A + ++R+ALR + Sbjct: 175 VASVSAAADPEASVAALLRMALREL 199 >gi|322437324|ref|YP_004219536.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9] gi|321165051|gb|ADW70756.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9] Length = 196 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 10/201 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y + + T S L + G LF+ T + ++Q+ L Sbjct: 1 MIAHLRGLLLFKSTNQAVVECGGVGYDVAISVATYSALPREGAEAKLFIFTKVAEEQLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ F L ++ G+G ++A+ VLS I A LV +I + + +IPGI K Sbjct: 61 FGFSDRQEKSLFEKLLTITGIGPKLAITVLSGIAADRLVTAIRGGDHDTLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ A + S + +SALVNLGY + QA A Sbjct: 121 AERVVLELKDKLDDMA----------TAPVAAVQSHGPAGDDVLSALVNLGYARPQAQKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 + L+ + R A Sbjct: 171 IEMALRDPGAAGSFEVLFRAA 191 >gi|154493758|ref|ZP_02033078.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC 43184] gi|154086508|gb|EDN85553.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC 43184] Length = 197 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T + ++V +R+D L Sbjct: 1 MIEYIKGEIVELTPARMILECAGIGYELNISLNTYTFYNGKP-TGKIYVYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F++L SV GVG A +LS ++ +EL+ I +N + + GI +K Sbjct: 60 FGFAGKDERELFLMLTSVSGVGPNTARMILSSLSPSELIRVIADKNETALTSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + V + + + + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPIEGM------TVTGGSSSVAASGAVTEEAVAALVMLGFQKAASQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK +A Q+I+ ALR + Sbjct: 174 VNLILKGSPALA-VEQVIKTALRML 197 >gi|152980261|ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] gi|166230559|sp|A6SUQ3|RUVA_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151280338|gb|ABR88748.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] Length = 191 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + P+ T L +GD L +R+D L Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L + G+GAR A+ +LS ++ +L ++I +Q + + +IPGI K Sbjct: 61 FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + ++AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADLGVAGAVATDATSDILNALLALGYSDKEAMLA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+++S Sbjct: 168 LKQV----PAGTGVSDGIKLALKSLS 189 >gi|218671058|ref|ZP_03520729.1| Holliday junction DNA helicase RuvA [Rhizobium etli GR56] Length = 197 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 94/200 (47%), Positives = 139/200 (69%), Gaps = 3/200 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ YC RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRL 200 V + +K AD +++IRL Sbjct: 178 VAAAMKTAGEGADSAKLIRL 197 >gi|282164971|ref|YP_003357356.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella paludicola SANAE] gi|282157285|dbj|BAI62373.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella paludicola SANAE] Length = 196 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQIR 59 MI ++G +E + ++IDV GV Y + P + G+ C +F+ T+ R+ D Sbjct: 1 MIAHLEGRLEYKGHERIVIDVGGVGYDVRVPTHLYDLIPAEGERCKVFIHTYFREEDGTS 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + DR++F LL +V G+G +VA+G++S ITA++L E+I+++++K + ++ G+ K Sbjct: 61 LYGFTTWQDREFFKLLMTVSGIGPKVALGIMSSITASDLAEAIVVEDAKALTRVNGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A R++ ELK K +S + +A + +A SALV LGY + A+ Sbjct: 121 MAQRLILELKDKVAEMS----------IENRAKKPGADMTSEDATSALVALGYSRQAASA 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV ++ ++I+ +LR + Sbjct: 171 AVARARDASPGLSKVEELIKTSLRYL 196 >gi|226698801|sp|A4G1U8|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193222212|emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans] Length = 192 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + P+ T L +G+ L +R+D L Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGEKVALLTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + G+GAR A+ +LS ++ +L +I LQ + + +IPGI K Sbjct: 61 FGFGTAEERNVFKQLVKITGIGARTALSILSGMSVADLSNAITLQEAGRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + + + A + ++AL+ LGY +A A Sbjct: 121 AER------------LLLELKGKLGADLGAAGGVIHSDATSDILNALLALGYSDKEALLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+A+S Sbjct: 169 MKQV----PAGTGVSDGIKLALKALS 190 >gi|238650928|ref|YP_002916784.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii str. Rustic] gi|259495655|sp|C4K2D5|RUVA_RICPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|238625026|gb|ACR47732.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii str. Rustic] Length = 203 Score = 213 bits (544), Expect = 9e-54, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ + L Sbjct: 1 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASDKTLGTLAE-GEFYKLFIETHVREEHMHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS + + + P + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197 >gi|311069260|ref|YP_003974183.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942] gi|310869777|gb|ADP33252.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942] Length = 201 Score = 213 bits (544), Expect = 9e-54, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K + T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERNQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++E+I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILASGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + +++ ++++ + A+ AL LGY + + Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFN-HEDRIEKHKAETALDEALEALRVLGYAEKEIKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + KE Q ++ AL+ + Sbjct: 177 LPHL--KEDTTLTTDQYVKKALQKL 199 >gi|302345821|ref|YP_003814174.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC 25845] gi|302149753|gb|ADK96015.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC 25845] Length = 205 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI I+G + L +++ GV Y + + T S + + L+V T R D Sbjct: 1 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 60 NYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPNTPAVNAAIKDEAVSALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L ++ ++ Q+++LAL+ I Sbjct: 177 SAKVVVSILTEQPDLP-VEQVVKLALKMI 204 >gi|21673101|ref|NP_661166.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS] gi|25453273|sp|Q8KFR0|RUVA_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|21646174|gb|AAM71508.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS] Length = 201 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + + +++V G+ Y+++ T L G LF ++R+D +L Sbjct: 1 MFAFLRGELVTVSREEAVVEVSGIGYLLHISSGTSRRLPPEGSQVRLFTHHYVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + + Q F LL ++ GVG ++AM VLS ++ E+ E+I+ + + I G+ K Sbjct: 61 FGFLDEEELQLFRLLLTIGGVGPKLAMAVLSGLSVGEIQEAIVANRPETLYGITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL+ K + + + + A +A++AL+ LG+ + A A Sbjct: 121 ASRIILELRDKILKIQP-------AASGKTAGAPQALQLNEDALAALMTLGFPKPAAQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + +L+ + +++R AL Sbjct: 174 ISGILETSPGL-SVEEVVRAAL 194 >gi|27468243|ref|NP_764880.1| holliday junction DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|57867153|ref|YP_188781.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis RP62A] gi|251811047|ref|ZP_04825520.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|282875933|ref|ZP_06284800.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis SK135] gi|293366401|ref|ZP_06613080.1| crossover junction endoribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|33301648|sp|Q8CS90|RUVA_STAES RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71153736|sp|Q5HNQ9|RUVA_STAEQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|27315789|gb|AAO04924.1|AE016748_158 holliday junction DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|57637811|gb|AAW54599.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis RP62A] gi|251805423|gb|EES58080.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|281294958|gb|EFA87485.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis SK135] gi|291319526|gb|EFE59893.1| crossover junction endoribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|329724713|gb|EGG61219.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU144] gi|329733747|gb|EGG70073.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU045] gi|329737232|gb|EGG73486.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU028] Length = 200 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ G+ Y I P + + ++ +R+D L Sbjct: 1 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + Q PGI K Sbjct: 60 YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +++ + + Q + A+ AL LGY + + T Sbjct: 120 ARQIVLDLKGKV----TITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELTKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ K N D++ +++ L+ + Sbjct: 176 EKSLNKHNVNSVDEA--VKIGLQTL 198 >gi|83954484|ref|ZP_00963195.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. NAS-14.1] gi|83840768|gb|EAP79939.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. NAS-14.1] Length = 222 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D++LIDV+GV Y++YC RT++ L +G+ LF + +R+D ++L Sbjct: 1 MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + + +I L + + G+ KI Sbjct: 61 FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--------------ICSMPSFAINAISA 166 A R++ +LK KA + ++ + +A S A+SA Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEAAAEVIETAAPKRRPVAPPNQSAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG A A V+ E A+ Q+IR AL+ ++ Sbjct: 181 LGNLGYGPGDAAGA-VAQAAGEMPEAETPQLIRAALKLLA 219 >gi|260591290|ref|ZP_05856748.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319] gi|260536656|gb|EEX19273.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319] Length = 205 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG + L +++ GV Y + + T S + + L+V T R D Sbjct: 1 MIEYIKGELAELTPAMAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 60 NYTLYGFANKQERALYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSNTPGTPAVDAGIKDEAVSALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L ++ ++ Q+++LAL+ I Sbjct: 177 SAKVVVSILTEQPDLP-VEQVVKLALKMI 204 >gi|227833242|ref|YP_002834949.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262184228|ref|ZP_06043649.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|254766955|sp|C3PGQ7|RUVA_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|227454258|gb|ACP33011.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 202 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +++ GV Y + L L + G+ + +++D + L Sbjct: 1 MIASLRGTVLDIQLDHAVLECAGVGYKVLATPAMLGTLQR-GEEARVMTTLVVKEDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S DR F +LQ+V G+G ++A+ LS ++A +L ++I + + + +IPG+ ++ Sbjct: 60 YGFTSQDDRDMFHVLQTVSGLGPKLALAALSVMSAGDLAQAIAGEEAARLQKIPGVGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + A + + + AL+ LG+ A Sbjct: 120 AQRLILELKDKVKAFAP-----AESADLSSAAPAAAGPVVEDVVEALIGLGFTDKMARPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V SV+ ++ + A ++R AL + Sbjct: 175 VESVVAEQPDAA-TPVVLRAALSQLGA 200 >gi|325917782|ref|ZP_08179966.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas vesicatoria ATCC 35937] gi|325535998|gb|EGD07810.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas vesicatoria ATCC 35937] Length = 194 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITGGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY A Sbjct: 121 AERMVVELRDRAADFSSGAPITGQL----------GPDAVSEATVALQQLGYKP---AEA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + +IR AL+A Sbjct: 168 ARMAREAGAEGDEVATVIRKALQA 191 >gi|254419140|ref|ZP_05032864.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3] gi|196185317|gb|EDX80293.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3] Length = 205 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E LID GV Y++ C RTL L GD T+ V + +D R Sbjct: 1 MIGRLRGVLAEVGEADCLIDCAGVGYVVSCGARTLGRLPAPGDEATVHVHSQWSEDAGPR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ +R+ F L ++QGVG + A+ VL + EL ++ ++ +A+ G+ K Sbjct: 61 LYGFLTRDERRAFTTLLAIQGVGPKAALAVLDVLPPGELAGAVAREDKAAVARANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELKGK + S + PS A+SAL+ LG + A Sbjct: 121 LALRIVTELKGKPLGDVSFAPTAPGVHVEIAPPP---PSLTGEAVSALLGLGVAEVNARR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV L + + A+ +IR AL+ + Sbjct: 178 AVDQALIRLGDEAELPAVIRAALQEL 203 >gi|171060623|ref|YP_001792972.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6] gi|229560097|sp|B1Y8E1|RUVA_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170778068|gb|ACB36207.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6] Length = 191 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ T L +G+ TL +R+D L Sbjct: 1 MIGRLTGTLAEKSPPQLLVDVGGVGYEVDVPMSTFYNLPVLGERVTLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR A+ +LS ++ +L +++ Q + + ++PGI K Sbjct: 61 YGFLTATERATFRQLLKISGVGARTALSILSGLSVADLAQAVSAQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + + + + + AL+ LGY + +A A Sbjct: 121 AER------------LLLELKGKLGPDLALPGAVIRNEAQSDIVQALIALGYNEREAAAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K S I+LALRA+ Sbjct: 169 I----KPLPADVGVSDGIKLALRAL 189 >gi|288957819|ref|YP_003448160.1| holliday junction DNA helicase [Azospirillum sp. B510] gi|288910127|dbj|BAI71616.1| holliday junction DNA helicase [Azospirillum sp. B510] Length = 208 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+V++DV GV Y++ C RTLS + +G+ +L VET +R+++I L Sbjct: 1 MIAKLTGIVDSTGTDWVVLDVNGVGYLLSCSNRTLSRMV-VGERLSLVVETFIREERIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL ++QGVGAR+A+ +L + +L +I Q+ + + G+ K+ Sbjct: 60 HGFGDQAERDWFKLLTTIQGVGARLALSILGVLDPDQLTRAIAAQDKTALVRADGVGPKV 119 Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A+RI+ ELK K + L A + +A+SALVNLGYG+ +A Sbjct: 120 AARILNELKDKVGNLALGPAAAAGAPAGKGAPAAVPGASPALADAVSALVNLGYGRSEAF 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AVV+ + + A S +IR L+ +S Sbjct: 180 GAVVAAGRVLGDDAGVSDLIRQGLKELS 207 >gi|148543762|ref|YP_001271132.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri DSM 20016] gi|184153168|ref|YP_001841509.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM 1112] gi|227363258|ref|ZP_03847390.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri MM2-3] gi|325682134|ref|ZP_08161652.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri MM4-1A] gi|167012661|sp|A5VIX1|RUVA_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560094|sp|B2G6E7|RUVA_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148530796|gb|ABQ82795.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus reuteri DSM 20016] gi|183224512|dbj|BAG25029.1| holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM 1112] gi|227071714|gb|EEI10005.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri MM2-3] gi|324978778|gb|EGC15727.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri MM4-1A] Length = 199 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y+++DV GV Y + ++V +R+D I L Sbjct: 1 MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVQVYVYQAVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFTDQNEKNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+ K + SS + ++ +A+ AL LGY + Sbjct: 120 ASQIVLDLRDKLTNESS----SSLFATTQLTVDATVNRELKDALEALAALGYKERDIKKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +++K+E+ D + +R ALR ++ Sbjct: 176 QKALMKEEQMATD--EYLRQALRLLN 199 >gi|300727799|ref|ZP_07061181.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14] gi|299774952|gb|EFI71562.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14] Length = 205 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG + L +++ GV Y + + T S + D L+V + R D Sbjct: 1 MIEYIKGELTELTPALAVVEAAGVGYALNISLNTYSAIQGKKD-VKLYVHEALVAGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R+ + LL +V GVGA A +LS ++ EL I N K++ + GI Sbjct: 60 SFTLYGFFTKQERELYRLLITVSGVGANTARMILSSLSPVELCTVISSGNDKMLKSVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K ISL + N A A++AL LG+ Sbjct: 120 GLKTAQRIIVDLKDKIISLGIATEL---PSNAGHATAIINNDVKDEAVAALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V ++L ++ Q+++LAL+ I Sbjct: 177 SAKVVTAILTDSPDMP-VEQVVKLALKQI 204 >gi|87198447|ref|YP_495704.1| Holliday junction DNA helicase RuvA [Novosphingobium aromaticivorans DSM 12444] gi|123722701|sp|Q2GBA3|RUVA_NOVAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|87134128|gb|ABD24870.1| Holliday junction DNA helicase RuvA [Novosphingobium aromaticivorans DSM 12444] Length = 204 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 70/204 (34%), Positives = 117/204 (57%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ +IDV GV Y+++C +TL+ LG GD + E + + RL Sbjct: 1 MIAKLTGILDDTGPDWAVIDVNGVGYLVHCSAKTLTHLGLRGDKVVVHTEMQVSETDQRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R WF LL +VQGVG++VA+ +LS ++ EL + +S ++A+ G+ K+ Sbjct: 61 IGFTSAGERAWFRLLTAVQGVGSKVALAILSALSVEELQRACAHGDSAMVARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK KA L+ +A + + + +A+SAL NLG+ A++A Sbjct: 121 ASRIVNELKDKAGGLAGYAS---PVGPGGEAFVAPPGNASADAVSALQNLGFKPAVASSA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + +K+ A + ++R+AL+ Sbjct: 178 VAAAVKELGEDAGLNDLVRVALKR 201 >gi|227544210|ref|ZP_03974259.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri CF48-3A] gi|300908206|ref|ZP_07125672.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri SD2112] gi|133930481|gb|ABO43812.1| RuvA [Lactobacillus reuteri] gi|227185803|gb|EEI65874.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri CF48-3A] gi|300894633|gb|EFK87989.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri SD2112] Length = 199 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y+++DV GV Y + ++V +R+D I L Sbjct: 1 MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVQVYVYQAVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFTDQNEKKLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVNYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+ K + SS + ++ +A+ AL LGY + Sbjct: 120 ASQIVLDLRDKLTNESS----SSLFATTQLTVDATVNRELKDALEALAALGYKERDIKKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +++K+E+ D + +R ALR ++ Sbjct: 176 QKTLMKEEQMATD--EYLRQALRLLN 199 >gi|78188435|ref|YP_378773.1| Holliday junction DNA helicase RuvA [Chlorobium chlorochromatii CaD3] gi|90134727|sp|Q3ATE5|RUVA_CHLCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78170634|gb|ABB27730.1| Holliday junction DNA helicase subunit RuvA [Chlorobium chlorochromatii CaD3] Length = 204 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 6/202 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D +I++QGV Y T L G LF ++R+D + L Sbjct: 1 MYAYFRGTLISFTADEAIIELQGVAYHFLISATTSRQLPNSGSEVQLFAHLYVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +RQ F LL GVG ++A+ VLS + E+ ++I+ + + I G+ K Sbjct: 61 YGFYSEEERQLFRLLLQASGVGPKLALSVLSGLPVHEVHDAIVSNIPERLYGISGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + LS V+ + A +AI+ALV LG+ + A Sbjct: 121 AARIILELRDKILKLSPVLPTATARRPHNAAQ-----QLRDDAITALVTLGFPRAAAQKT 175 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V S+L + N ++++ AL Sbjct: 176 VTSLLDENSNCT-VEEVVKSAL 196 >gi|295103887|emb|CBL01431.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium prausnitzii SL3/3] Length = 203 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V++ GV Y CP L +G TL+ + ++ + L Sbjct: 1 MIYCLTGKIVKKSLNAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F +L +V GVG +V + +LS + + +I + K G+ K+ Sbjct: 61 YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ ELK K + + +D++ + S + AI+ALV+LGY Q +A Sbjct: 121 AQRIVLELKDKVAKGFVDGISLEDVAGTAADTPATQS----SAQAIAALVSLGYSQSEAA 176 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + +II+LALR+++ Sbjct: 177 LAIAKIDATLP----VEEIIKLALRSMA 200 >gi|331269238|ref|YP_004395730.1| Holliday junction DNA helicase RuvA [Clostridium botulinum BKT015925] gi|329125788|gb|AEB75733.1| Holliday junction DNA helicase RuvA [Clostridium botulinum BKT015925] Length = 200 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG L +DY++++ + Y IY T++ + I + +++E +R+D I + Sbjct: 1 MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F LL ++ GVG++ A+ +LS L +SI+ ++ K++ + PGI KI Sbjct: 61 YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVCSLKKSILSEDYKMLTKAPGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + + + N + A+ AL+ LG+ Q +A A Sbjct: 121 AQRITLELKDKIEKI---YEDSLEEDNDIDNLSKNSTRKYDEALEALIALGFSQKEAEKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +II+ +LR + Sbjct: 178 LKDIDITKG----IEEIIKDSLRYL 198 >gi|282860281|ref|ZP_06269351.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010] gi|282586955|gb|EFB92190.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010] Length = 205 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG + L +++ +GV Y I + T S + D L++ T R D Sbjct: 1 MIEYIKGELAELTPTLAVVEARGVGYAINISLNTYSAIQGKND-IKLYIHEAIVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GFLS +R + LL +V GVGA A +LS +T +EL I + K++ + GI Sbjct: 60 SYTLYGFLSKQERSLYRLLITVSGVGANTARMILSSLTPSELCNVIANGDEKMLKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K + D +N A + A+SAL+ LG+ Sbjct: 120 GLKTAQRIIVDLKDKIMQSGI---ADELHINSSSASSNINTAVKDEALSALIMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L ++ + Q+++LAL+ I Sbjct: 177 SAKVVVSILTEQPELP-VEQVVKLALKMI 204 >gi|257876215|ref|ZP_05655868.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC20] gi|325567287|ref|ZP_08143954.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus casseliflavus ATCC 12755] gi|257810381|gb|EEV39201.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC20] gi|325158720|gb|EGC70866.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus casseliflavus ATCC 12755] Length = 196 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + ++ Y++++ G+ Y I S GK+ +++ +R+D L Sbjct: 1 MYEYIIGKVTDIFPAYIVVETHGIGYQIAF-GNPYSFSGKLNQEVKIYLHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +Q F+ L SV G+G + A+ +++ T L+ ++ + + + PG+ K Sbjct: 60 YGFATIEGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L + + + A+ AL LGY + + A Sbjct: 120 AQQMILDLKGKVAELVG---------EEAIVPLSVATTALDEAMEALKALGYSEKEVKKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D + +R ALR + Sbjct: 171 EKQLAANTTKSTD--EYLREALRLM 193 >gi|70726280|ref|YP_253194.1| Holliday junction DNA helicase RuvA [Staphylococcus haemolyticus JCSC1435] gi|90135915|sp|Q4L6Y7|RUVA_STAHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68447004|dbj|BAE04588.1| holliday junction DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 201 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 97/206 (47%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I+G + L+ +V+++ + GV Y I P + + ++ +R+D Sbjct: 1 MYAYIRGKLTQLFPTHVVVESINGVGYEIQTP-NSYRFQKYLEKELVIYTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+++ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 LYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKMAIENENDAYLTKFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK + ++ + + + A+ AL LGY + + + Sbjct: 120 TARQIVLDLKGKV----QITRETTETLLSMNEENSNSENLVKEALLALEALGYSKREISK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V VL K + ++L L+ + Sbjct: 176 -VEKVLNKS-TFDSVDEAVKLGLKTL 199 >gi|323142288|ref|ZP_08077120.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT 12067] gi|322413172|gb|EFY04059.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT 12067] Length = 200 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG +KG ++ L D +I+ GV Y ++ P L+ L + G L + T +R+D I Sbjct: 1 MIGSLKGTVDSLGIDNCIIETAGGVGYRVFMPAAQLAQLTQ-GASVRLHIHTAVREDAIV 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFLS F LL ++ GVG ++A+G+LS + ++ ++ KV+ ++PGI K Sbjct: 60 LYGFLSREYYDLFELLLTISGVGPKMALGILSAVKPDAFYLAVQSRDIKVLTKLPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K +++ +A AI AL +LGY + Sbjct: 120 TAERLLLELKDKVGPVAAESADSFG-----EAVAAGGSGAVAEAIEALASLGYSNSEIMP 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + + +I++ ALR + Sbjct: 175 VIKKI--EGAETKTSEEILKQALRLM 198 >gi|157827122|ref|YP_001496186.1| Holliday junction DNA helicase RuvA [Rickettsia bellii OSU 85-389] gi|166200254|sp|A8GWC2|RUVA_RICB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157802426|gb|ABV79149.1| Holliday junction DNA helicase motor protein [Rickettsia bellii OSU 85-389] Length = 203 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ Y+DYV+IDV GV Y ++ +TLS L + G+ LF+ETH+R+D I L Sbjct: 1 MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ +F LLQSV G+G R+A+ +LS +T T++ +I ++ + I G+ K+ Sbjct: 60 YGFLSLEEKSFFNLLQSVNGIGTRMALSILSALTPTDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL K +SS + + P + I AL+N+G+ + +A A Sbjct: 120 AERIVRELSDKVAKISS----SSAAIKDSLNIKGITPVASSEVIKALINMGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ K I+ D ++IR AL+ Sbjct: 176 VQEIITKNPEISID-ELIRTALK 197 >gi|242242914|ref|ZP_04797359.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] gi|242233629|gb|EES35941.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] Length = 200 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ G+ Y I P + + ++ +R+D L Sbjct: 1 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + Q PGI K Sbjct: 60 YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPYEVKLAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +++ + + Q + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKV----TITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELSKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ K N D++ +++ L+ + Sbjct: 176 EKSLNKHNVNSVDEA--VKIGLQTL 198 >gi|157803866|ref|YP_001492415.1| Holliday junction DNA helicase RuvA [Rickettsia canadensis str. McKiel] gi|166200255|sp|A8EZ47|RUVA_RICCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157785129|gb|ABV73630.1| Holliday junction DNA helicase motor protein [Rickettsia canadensis str. McKiel] Length = 204 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 70/203 (34%), Positives = 119/203 (58%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKADSQGDDYVIIDVNGVGYLVYASGKTLDKLVE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T ++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTRMALSILSNLTPDDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +SS S + P + + AL+NLG+ + +A Sbjct: 120 AERIVLELKDKVTKISS-----SSAIKDSLNIKNITPVTSNEVMKALINLGFSRFEAQNV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 175 VQGIITQNPKISID-ELIKTALK 196 >gi|148653226|ref|YP_001280319.1| Holliday junction DNA helicase RuvA [Psychrobacter sp. PRwf-1] gi|172048524|sp|A5WFC8|RUVA_PSYWF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148572310|gb|ABQ94369.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter sp. PRwf-1] Length = 210 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 4/209 (1%) Query: 1 MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + L L+ GV Y + P+ L ++ +L+ H+R+D Sbjct: 1 MIGLIEGRVCHLSAPVACLMTASGVGYEVELPLPDFCQL-QLEAMASLWTHLHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVGA++A+ ++S +ATEL I +N + ++PGI K Sbjct: 60 LYGFLHPTERDVFRQLIRVNGVGAKMALAMMSTFSATELKHCIDTENDAALTRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + S SAL++LGY +A Sbjct: 120 TAQRLLIELKGKFDHIQSDMSLLTEVEQQIGIAANSEGVILAEVESALISLGYRDKEAQQ 179 Query: 180 AVVSVLKKEKN--IADDSQIIRLALRAIS 206 A+ + + + + D +++L L+ +S Sbjct: 180 AIKAARETDAGQQLVDTQSLLKLTLKQLS 208 >gi|38233961|ref|NP_939728.1| Holliday junction DNA helicase motor protein [Corynebacterium diphtheriae NCTC 13129] gi|81564836|sp|Q6NGX4|RUVA_CORDI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|38200223|emb|CAE49907.1| holliday junction DNA-helicase [Corynebacterium diphtheriae] Length = 203 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G +E + +I+ GV Y + TL L + G+ + +R++ L Sbjct: 1 MIVSLRGTVESIGLGSAVIECNGVGYEVLAAPTTLGRLTR-GEQARVLTTMVVREESQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D R+ F+LLQSV G+G ++A+ S T ++ I ++K + +IPG+ ++ Sbjct: 60 YGFTDDASRRMFVLLQSVSGLGPKLALAAQSVFTTEDIARHIAGGDAKALQKIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + Q I + + ALV LG+ + A Sbjct: 120 AERMIVDLKDKVVGFND----GIPAAAQPQLSIAVDQAVQEQVLEALVGLGFSEKIALPV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + VL+ + SQ +R AL + Sbjct: 176 LSRVLRDSPEL-SKSQALRAALSELGT 201 >gi|320109383|ref|YP_004184973.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4] gi|319927904|gb|ADV84979.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4] Length = 198 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y + + T S L G LF+ T +R+D I L Sbjct: 1 MIAHLRGRLLAKSPNQAIVECGGVGYDVAISVTTFSALKSEGAEVELFINTQVREDAIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L +V G+G ++ + VLS I A LV +I + + +IPGI K Sbjct: 61 FGFAEMEEKRLFEKLITVSGIGPKLGITVLSGIAAPLLVAAIKGSDHATLQKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + S D + +SAL NLGY + A A Sbjct: 121 AERVVVELKDKLEDMISAPSADPGFHAGPAG---------DDVLSALANLGYQKAAAQRA 171 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + +++E + + ++ R A+ A+ Sbjct: 172 IQTAIEQEPALRTEFEKLFRAAMGAM 197 >gi|160942948|ref|ZP_02090187.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii M21/2] gi|158445849|gb|EDP22852.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii M21/2] Length = 203 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V++ GV Y CP L +G TL+ + ++ + L Sbjct: 1 MIYCLTGKIVKKSLNAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F +L +V GVG +V + +LS + + +I + K G+ K+ Sbjct: 61 YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V A + AI+ALV+LGY Q +A A Sbjct: 121 AQRIVLELKDKVAK--GFVDGISLEDVAGSAADTPATQSSAQAIAALVSLGYSQSEAALA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +II+LALR+++ Sbjct: 179 IAKIDAALP----VEEIIKLALRSMA 200 >gi|312129386|ref|YP_003996726.1| holliday junction DNA helicase subunit ruva [Leadbetterella byssophila DSM 17132] gi|311905932|gb|ADQ16373.1| Holliday junction DNA helicase subunit RuvA [Leadbetterella byssophila DSM 17132] Length = 191 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 12/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +IDVQGV Y++ ++T + L +G+ C LF +R+D L Sbjct: 1 MIAHLNGILSEKEPAQAVIDVQGVGYLLKISLQTSAALPAVGEKCKLFCLQIIREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV G+G +A+ LS +T E+V++I+ ++ K I I GI +K Sbjct: 61 YGFATREERVLFEHLISVSGIGPAIALVFLSSMTGPEIVQAIVSEDVKTIQGIKGIGLKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + ELK K + + A++ALV LG + A + Sbjct: 121 AQRAVIELKDKLKKEPMATTGTLPA------------RIRMEALAALVTLGIPKATAEKS 168 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++LK+ ++I+L+LR Sbjct: 169 VDNILKRAPADITLEEVIKLSLR 191 >gi|268608399|ref|ZP_06142126.1| Holliday junction DNA helicase RuvA [Ruminococcus flavefaciens FD-1] Length = 206 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + +I+ GV Y T++ LG++G L+ ++R+D + L Sbjct: 1 MIYSLKGKLTVKELGFAVIECGGVGYGCKTSYNTIASLGEVGSEAMLYTHLYVREDAVEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV GVG + A+ +LS +T + + +SK + GI K Sbjct: 61 FGFATQQELSCFRLLISVSGVGPKAAISILSDVTPEKFAFLVASGDSKSFTRTKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S S + S A+ AL+ LGY Q + Sbjct: 121 AQRIVLELKDKISSESISGSVSGDAAAFAPSSAAPSDS-VSEALEALMVLGYTQGE---- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 +L K +I+ LR ++ Sbjct: 176 TAPILGKLDPSMSTQDLIKETLRLLTA 202 >gi|164687538|ref|ZP_02211566.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM 16795] gi|164603312|gb|EDQ96777.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM 16795] Length = 197 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T + K G +F + +R+D + L Sbjct: 1 MYSYIKGTVEEIYLDRIVLENNGIGYEINVSSFTAQSVQK-GKDAKIFTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + + F LL SV +G +V +G+LS T +L I+ ++ +++ PG+ K Sbjct: 60 CGFASRKELEMFKLLTSVSKIGPKVGLGILSCATPPQLSAYILSEDIAKLSKCPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S+ + + + A+ AL+ LGY +A A Sbjct: 120 AERIILELKDKVDKESAEFEATLFNQAPTGLEL-------DEAVEALLALGYSNVEAKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K + +I+ AL + Sbjct: 173 VQKFKK---DGLKTEDLIKKALTYL 194 >gi|157828405|ref|YP_001494647.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933115|ref|YP_001649904.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str. Iowa] gi|166200256|sp|A8GRW4|RUVA_RICRS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045764|sp|B0BXC2|RUVA_RICRO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157800886|gb|ABV76139.1| Holliday junction DNA helicase motor protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908202|gb|ABY72498.1| Holliday junction DNA helicase [Rickettsia rickettsii str. Iowa] Length = 204 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 73/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGTLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS + + + P + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197 >gi|154686915|ref|YP_001422076.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens FZB42] gi|308174476|ref|YP_003921181.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|166230516|sp|A7Z769|RUVA_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154352766|gb|ABS74845.1| RuvA [Bacillus amyloliquefaciens FZB42] gi|307607340|emb|CBI43711.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|328554396|gb|AEB24888.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens TA208] gi|328912801|gb|AEB64397.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus amyloliquefaciens LL3] Length = 201 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y ++ P + K+ + T+F H+++D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIY---KVSNQETIFTYHHIKEDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L ++E+I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + ++ ++ + + A+ AL LGY + + Sbjct: 118 ARQIILDLKGKLADVVPEMIDNLFN-HEARIEKQEAETALDEALEALRVLGYAEKEIKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + KE+ Q ++ AL+ + Sbjct: 177 LPHL--KEETALSTDQYVKKALQKL 199 >gi|84501645|ref|ZP_00999817.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis HTCC2597] gi|84390266|gb|EAQ02825.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis HTCC2597] Length = 220 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I+ D+VLIDV+GV Y+++ RTL+ L G+ L+ E +R+D ++L Sbjct: 1 MIGRLAGRIDMRGPDHVLIDVRGVGYVVFVSDRTLATLPGAGEAAALYTELIVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++WF LL SVQGVGA+ A+ +L + A L +I L + + GI K Sbjct: 61 YGFPTLVEKEWFRLLTSVQGVGAKGALAILGALGAEGLGRAIALGDQASVKAAKGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------------MPSFAINAISAL 167 A RI+ ELK KA ++ ++ + + + S A+SAL Sbjct: 121 AQRIVLELKDKAPAVMAMGGAAPTSAAPAETEVVEPVPAPAATAAPASTASAQAEALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG A V+ E AD + +IR ALR ++ Sbjct: 181 GNLGYGPS-EAAAAVAEAAGETPRADTAALIRSALRRLA 218 >gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum seropedicae SmR1] gi|300072547|gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D QGV Y + P+ T L +G+ TL +R+D L Sbjct: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + GVGAR A+ +LS ++ +L +++ LQ + + ++PGI K Sbjct: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + + + + + ++AL+ LGY +AT A Sbjct: 121 AER------------LLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V K + S I+LAL+A+S Sbjct: 169 MKQVPKD----STVSDGIKLALKALS 190 >gi|332826883|gb|EGJ99683.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas gadei ATCC BAA-286] Length = 193 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L V ++ GV Y I + T S L LF+ +R+D +L Sbjct: 1 MIDYIKGEITELTPASVTLETYGVGYFISISLNTYSNLTGKKS-AQLFIYEAIREDAHQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ FMLL SV G+GA +LS + EL I NS ++ + GI +K Sbjct: 60 FGFFDKQERELFMLLISVSGIGASTGRMILSSMNTQELANVIASGNSDMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K +S + Q DM A++ALV LG+ Q + Sbjct: 120 AQRVIVDLKDKI-KVSGIEQVDMFASGHPSG---------EEAVAALVMLGFTQQASQKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK +K + QII+ AL+ + Sbjct: 170 VAKILK-DKADSTVEQIIKTALKML 193 >gi|67458996|ref|YP_246620.1| Holliday junction DNA helicase motor protein [Rickettsia felis URRWXCal2] gi|75536568|sp|Q4ULW8|RUVA_RICFE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67004529|gb|AAY61455.1| Holliday junction DNA helicase RuvA [Rickettsia felis URRWXCal2] Length = 203 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 74/203 (36%), Positives = 122/203 (60%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DY++IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKIDSQGDDYIIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ +I ++ + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS + P + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISS----GSVIIKDSLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 176 VQGIIIQNPEISID-ELIKTALK 197 >gi|313203476|ref|YP_004042133.1| holliday junction DNA helicase subunit ruva [Paludibacter propionicigenes WB4] gi|312442792|gb|ADQ79148.1| Holliday junction DNA helicase subunit RuvA [Paludibacter propionicigenes WB4] Length = 196 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L YV+++ G+ Y I+ + T S LG+ L+V +R+D L Sbjct: 1 MIDYIKGEISELTPAYVVLETAGIGYFIHITLPTFSFLGE-HTSAKLYVYESIREDAHVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +RQ F+LL SV G+GA A ++S +A E+ + I N + I GI K Sbjct: 60 YGFRLQSERQLFLLLISVSGIGANTARMIMSSYSAQEIQDMIASGNVSALNAIKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + + N A+SALV LG+ + Sbjct: 120 AQRIIVDLKDKIMKSAGGSEIISLVPN-------VQNEKKEEAVSALVMLGFAASASQKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++++ + Q+I+LAL+ + Sbjct: 173 VDKIVQEQPALK-VEQLIKLALKMM 196 >gi|297626360|ref|YP_003688123.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922125|emb|CBL56693.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 203 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 106/208 (50%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + ++++IDV GV + + T S L + G T+F +R+D ++L Sbjct: 1 MIAQLHGKVAAIGANWLVIDVAGVGFQVSTTPNTTSAL-RTGQTATVFTSLVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L ++ GVG ++A+ ++S +T E ++ ++ + +PGI K Sbjct: 60 YGFGGTDERDCFELCRTASGVGPKLALAIVSVLTPEEFATAVRTEDLPRLCTVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK + +L ++ N + P++ ++ L +LG+ A A Sbjct: 120 AQKIVIELKDRVDALF------VAPTNGSASVAPVTPAWQEQVMAGLESLGWSSRDAEAA 173 Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206 +V L +E A + +++ AL +++ Sbjct: 174 CETVAPLAEEDPEATVAALMKAALASLA 201 >gi|291519343|emb|CBK74564.1| Holliday junction DNA helicase, RuvA subunit [Butyrivibrio fibrisolvens 16/4] Length = 205 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + E+ V+++ GV Y + + T+ L IG L + ++D + L Sbjct: 1 MFAYVRGTLSDIDENIVIVENNGVGYCLSSSMNTIRQLPAIGSEVKLNTKLIPKEDSLTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F LL SV G+G + A+ +LS +T +++ ++ +++K A PGI K Sbjct: 61 YGFYDKEELKMFELLLSVSGIGPKGALAILSSMTVSDIQFAVAGEDAKAFAACPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + +LK K + + + S ++ +++ + S + ALV LGY A A Sbjct: 121 AERAIIDLKDKVDIIGAFEAKITSDLSGKKSASPGI-SVKEEVLEALVALGYSASNAARA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + E Q++ L+ +S Sbjct: 180 LDKMAITE--STTTEQLLGDTLKQMS 203 >gi|296137136|ref|YP_003644378.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12] gi|295797258|gb|ADG32048.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12] Length = 190 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ TL L +G TL + T +R+D L Sbjct: 1 MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAVGHAVTLLIHTVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+G R+A+ VLS ++ +E+ +++ Q++ ++PGI K Sbjct: 61 YGFATAGERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + A + + AL+ LGY + +A Sbjct: 121 AER-------------LLLELKGKLGADLGGAATAAAGSASDVLQALIALGYSEREA--- 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K IR AL++++ Sbjct: 165 -AAAAKALPEGCSVDDGIRQALKSLA 189 >gi|77464125|ref|YP_353629.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides 2.4.1] gi|126462968|ref|YP_001044082.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17029] gi|90135713|sp|Q3J0F6|RUVA_RHOS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200251|sp|A3PLU4|RUVA_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77388543|gb|ABA79728.1| Holliday junction DNA helicase subunit RuvA [Rhodobacter sphaeroides 2.4.1] gi|126104632|gb|ABN77310.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17029] Length = 224 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+Y RTL+ + +G+ L+ E +R+D ++L Sbjct: 1 MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----------------KEQAHICSMPSFAINAI 164 A R++ ELK KA +L ++ + K +A PS +A+ Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPEPGTSSGSRRKTRAPEPPRPSHTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGY A AV + + AD + +IR AL+ ++ Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221 >gi|299141888|ref|ZP_07035023.1| holliday junction DNA helicase RuvA [Prevotella oris C735] gi|298576739|gb|EFI48610.1| holliday junction DNA helicase RuvA [Prevotella oris C735] Length = 205 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG + L +++ GV Y + + T S + + L+V T R D Sbjct: 1 MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGI-QGKKAVKLYVHEALTTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF++ +R+ + LL +V GVGA A +LS ++ EL +I + K+I + GI Sbjct: 60 SFTLYGFVNKQERELYRLLITVSGVGANTARMMLSSMSPAELCNAIANGDEKMIKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A R++ +LK K ++ D V +++ I + A++AL LG+ Sbjct: 120 GLKTAQRVIVDLKDKIMASGI---ADELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 VV++L+K+ ++ Q+++ AL+ + Sbjct: 177 VAKVVVAILQKQADMP-VEQVVKEALKQL 204 >gi|261368084|ref|ZP_05980967.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM 15176] gi|282570074|gb|EFB75609.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM 15176] Length = 201 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D +I GV Y + P T L G T++ ++ ++ + L Sbjct: 1 MIYCLTGKILKKTLDTAVISCGGVGYAVQIPATTGEALPAPGQEGTVYTVMNVSENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ R F +L +V GVG + + +LS ++ ++ + + K + G+ K+ Sbjct: 61 YGFATEEQRDCFKMLTAVSGVGPKAGLAILSVMSPEKIALAASSGDHKAFTKASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K D + S A++ALV+LGY A A Sbjct: 121 AQRITLELKDKVGK----GLADGTGFGGADLSAPMPSSAPAQAVAALVSLGYTPSDAAAA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V II++ALR++S Sbjct: 177 VARV----DETLSVQDIIKVALRSLS 198 >gi|332530327|ref|ZP_08406273.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC 19624] gi|332040313|gb|EGI76693.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC 19624] Length = 194 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + VL+D GV Y + + T L +G TL +R+D L Sbjct: 1 MIGRLSGTLIAKNPPEVLVDCHGVGYEVQVSMNTFYHLPVLGQPVTLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F L V GVG R A+ VLS ++ EL +++ Q + + PG+ K Sbjct: 61 YGFGEDAERAAFRELIKVSGVGPRTALAVLSGMSVAELAQAVTQQEMGRLLKAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + L + + + + AL+ LGY +A Sbjct: 121 AER---------LLLELKGKLGADIGVAGPGAMAAGHDAQADIQQALLALGYSDKEA--- 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + LK + S+ IRLAL++++ Sbjct: 169 -AAALKALPKDVEVSEGIRLALKSLA 193 >gi|281426165|ref|ZP_06257078.1| holliday junction DNA helicase RuvA [Prevotella oris F0302] gi|281399741|gb|EFB30572.1| holliday junction DNA helicase RuvA [Prevotella oris F0302] Length = 205 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG + L +++ GV Y + + T S + + L+V T R D Sbjct: 1 MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGI-QGKKAVKLYVHEALTTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF++ +R+ + LL +V GVGA A +LS ++ EL +I + K+I + GI Sbjct: 60 SFTLYGFVNKQERELYRLLITVSGVGANTACMMLSSMSPAELCNAIANGDEKMIKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A R++ +LK K ++ D V +++ I + A++AL LG+ Sbjct: 120 GLKTAQRVIVDLKDKIMASGI---ADELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 VV++L+K+ ++ Q+++ AL+ + Sbjct: 177 VAKVVVAILQKQADMP-VEQVVKEALKQL 204 >gi|15892454|ref|NP_360168.1| Holliday junction DNA helicase motor protein [Rickettsia conorii str. Malish 7] gi|20140118|sp|Q92I89|RUVA_RICCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15619609|gb|AAL03069.1| holliday junction DNA helicase RuvA [Rickettsia conorii str. Malish 7] Length = 203 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGQLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS + + + P + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197 >gi|256825358|ref|YP_003149318.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius DSM 20547] gi|256688751|gb|ACV06553.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius DSM 20547] Length = 209 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 6/211 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + D+++++V GV + P + + + + G L +R+D + L Sbjct: 1 MIASLSGTITHVGLDHLVVEVGGVGMRVLVPPQVAAEV-RTGQEARLETSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL R+ F +QSV GVG R+A+ +++ ++ EL ++ ++ + +PGI K Sbjct: 60 FGFLDADTREVFETVQSVSGVGPRLALALVAVLSPAELSRAVHTEDLAALTSVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL GK + + + S P++A AL LG+ QAT A Sbjct: 120 AQRLVLELVGKLPA-DLGGGAAPTTTEQSAGGDPSEPAWAPQVRDALEGLGWNTAQATKA 178 Query: 181 ----VVSVLKKEKNIADDSQIIRLALRAISC 207 V + + ++R ALR + Sbjct: 179 TRTVVEQHAQDTGPPPELPVLLREALREAAS 209 >gi|118444147|ref|YP_877905.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT] gi|118134603|gb|ABK61647.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT] Length = 215 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 107/204 (52%), Gaps = 7/204 (3%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IKG GL +DY++++ + Y IY T++ + I + +++E +R+D I L+ Sbjct: 17 FEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMAGMPNINEKVKIYIEQIVREDFIGLY 76 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GFL + +R F LL ++ GVGA+ A+ +LS + L +I+ ++ K++ + PGI KIA Sbjct: 77 GFLREDERAMFNLLLTISGVGAKAALSLLSISNVSSLKVAIMTEDYKMLTRAPGIGKKIA 136 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI ELK K + + +D ++K AI ALV LG+ Q +A A+ Sbjct: 137 QRITLELKDKIEKIYAEDIEDGENISKLSMDTGRK---YDEAIEALVALGFTQKEAEKAL 193 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 ++ QII+ +LR + Sbjct: 194 KNIDINN----TIEQIIKDSLRYL 213 >gi|302874957|ref|YP_003843590.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] gi|307690425|ref|ZP_07632871.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] gi|302577814|gb|ADL51826.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] Length = 194 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+ +DY++I+ G+ Y I+ T++ L I ++++ +R+D I L Sbjct: 1 MYEYIKGIYKGIKKDYLIIENNGIGYKIFTSGGTIAALPSIDKEVFIYLKQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F +L ++ GVG + A+ +LS T L +I + I + PGI K Sbjct: 61 YGFATQEELELFTMLLNINGVGTKAALSLLSIGTVNNLKYAIATSDENFITKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + + A+ AL+ LGYG+ +A A Sbjct: 121 AQRIILELKDKLSKEVPLSHTSENIITNV---------YVDEALEALIALGYGEKEAEKA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V + +II+ L+ + Sbjct: 172 IANV----NHNMSIEEIIKSCLQLL 192 >gi|85374915|ref|YP_458977.1| Holliday junction DNA helicase RuvA [Erythrobacter litoralis HTCC2594] gi|123293674|sp|Q2N811|RUVA_ERYLH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84787998|gb|ABC64180.1| probable holliday junction DNA helicase protein [Erythrobacter litoralis HTCC2594] Length = 200 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 118/204 (57%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y+++C ++L+ LG++G+ CT++ + + ++ +RL Sbjct: 1 MIAKLKGLLDETGTDWAVIDVSGVGYLVHCSSKSLAALGEVGEACTVYTDLQVSENDMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG++VA+ +LS ++ E+ + ++ ++A+ G+ K+ Sbjct: 61 LGFAEASERDWFRLLTQVQGVGSKVALAILSALSTEEVQTACANGDAAMVARAQGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +L S N + +A+SAL NLG+ A A Sbjct: 121 AGRIVNELKDKAGALPSAPGGAAMAANP-------AGGASADAVSALENLGFKPAIAARA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +S++IR+AL+ Sbjct: 174 VATAQGELGEGASESELIRVALKR 197 >gi|189502747|ref|YP_001958464.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus 5a2] gi|229470527|sp|B3EU33|RUVA_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189498188|gb|ACE06735.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus 5a2] Length = 194 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G+I +++DV G+ Y + ++T L I C +F H+ QD L Sbjct: 1 MIAYIQGSITYKSPTQLIVDVGGIGYELQISLQTYDSLKDIAASCKIFTYLHITQDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++Q F+ L SV G+G RVA+ +LS +T L ++I+ ++ + + GI K Sbjct: 61 YGFSTIEEKQCFLQLLSVNGIGPRVAITILSALTPEALQQAIMTHDTITLQAVKGIGQKA 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+GK + +++ + A++AL LG + A Sbjct: 121 AQRIILELQGKVGKVGNMLS----------LQPSGQEAIYQEALAALSKLGIHKSTAEKT 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++LK+ + +I+LAL+ Sbjct: 171 VAAILKEHQGEITVESLIKLALK 193 >gi|220912786|ref|YP_002488095.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus A6] gi|254766940|sp|B8H9D7|RUVA_ARTCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219859664|gb|ACL40006.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus A6] Length = 213 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +ID+ G +Y +TLS L +G+ +F +R+D + L Sbjct: 1 MISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSRL-HVGEEGKVFTSLIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R+ F +L SV GVG R+A+ VL+ + + ++K ++PGI K+ Sbjct: 60 FGFADDDEREVFEVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDNKTFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + + A + S+ ++A+ +LG+ + A+ + Sbjct: 120 AGRIVLELAGKLVPHGTAPAA---------ATTAAEASWKPQVVAAMTSLGWSEKDASAS 170 Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205 + L E ++ + +I+R LR + Sbjct: 171 IDKALADEPEVSFRGNVPEILRTTLRWL 198 >gi|282880373|ref|ZP_06289084.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS 5C-B1] gi|281305729|gb|EFA97778.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS 5C-B1] Length = 204 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI I+G + L +++ G+ Y + + T S + + L+V T R D Sbjct: 1 MIEYIRGELTDLTPAQAVLEAAGIGYSLNISLNTYSAI-QGKKEVKLYVHESLVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 +GF S +R + +L +V GVGA A +LS I+ EL I + +++ + GI Sbjct: 60 NFTFYGFYSKQERDLYRMLITVSGVGANTARMILSAISPAELCNVIANGDERMLKSVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K +S + +S +Q A+SAL LG+ Sbjct: 120 GLKTAQRIIVDLKDKIVSSGIATELHVS----DQPQNMVHSGIRDEAVSALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLAL 202 + V S+LK E + Q+++LAL Sbjct: 176 SAKVVESILK-ESDSMPVEQVVKLAL 200 >gi|257063440|ref|YP_003143112.1| Holliday junction DNA helicase, RuvA subunit [Slackia heliotrinireducens DSM 20476] gi|256791093|gb|ACV21763.1| Holliday junction DNA helicase, RuvA subunit [Slackia heliotrinireducens DSM 20476] Length = 197 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + G D I+V GV + + P L+ L + G+ + +R+D + L Sbjct: 1 MIAFLNGRVAGHTTDTAFIEVNGVGFAVGMPASDLAKLPERGEEVLVHTYLAVREDAMAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++++F L V GVG +VA+ LS EL +I + K ++ IPG+ K Sbjct: 61 YGFLTQDEKRFFEKLIGVSGVGPKVALAALSVYKPEELANAIAAGDVKAVSMIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKG D + + A AL+++G+ +A A Sbjct: 121 AQRMILELKG--------SFSDENMQSLFDQETAEATRRLEGAREALLSMGFSSAEADLA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + ++ + DS +I+ ALR + Sbjct: 173 LKDAPEE---LHTDSALIQYALRRLGS 196 >gi|291513714|emb|CBK62924.1| Holliday junction DNA helicase subunit RuvA [Alistipes shahii WAL 8301] Length = 193 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y +IDV GV Y ++ + T S + L+V +R+D L Sbjct: 1 MYEYIKGTVAEVAPAYAVIDVGGVGYYLHISLETYSAIEHE-TETRLYVHYVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F LL SV GVG A +LS + EL I N+ ++ + G+ +K Sbjct: 60 YGFSTKAERELFRLLISVSGVGGNTARMILSTYSPRELQGIITAGNAVLLKNVKGLGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL GK M+ + A++AL LG+ + A Sbjct: 120 AQKIIVELSGKL----------MAPGADDGGAQPGAGGSFDEALAALSMLGFARAPAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VL++ A ++IR+AL+ + Sbjct: 170 LRGVLRESP-AAPVEELIRMALKKL 193 >gi|71065275|ref|YP_264002.1| Holliday junction DNA helicase RuvA [Psychrobacter arcticus 273-4] gi|90135656|sp|Q4FTU0|RUVA_PSYA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71038260|gb|AAZ18568.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter arcticus 273-4] Length = 207 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ G+ Y I P+ + L ++ + +++ H+R+D Sbjct: 1 MIGLISGQVQYLMAPTACVMTTSGIGYDIELPLPSFCQL-RLNEQASIWTHFHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R F L + GVGA++A+ +LS ++A EL + ++ + +IPGI K Sbjct: 60 LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQESETALTRIPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K ++ + + A I + S AL++LGY + +A Sbjct: 120 TAQRLLIELKDKLKNIEVDNSNLEFAI--QPAPISAEDSIIAEVEGALMSLGYKEKEAQQ 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 A+ + + AD +++ L+ Sbjct: 178 AIKAAKSNGETFADTQSLLKATLQQ 202 >gi|315303293|ref|ZP_07873928.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596] gi|313628340|gb|EFR96838.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596] Length = 201 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIITTITPEYIVVETGQIGYQI-ITGNPFSFQHLEGTETQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + VV D+ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGKLV---DVVTSDIVYNTPENDIVSGLAPALEEAVLALEALGYSSRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++K+E +D I+LAL+ + Sbjct: 177 IPKLVKEEDLTSD--AYIKLALKLM 199 >gi|189499398|ref|YP_001958868.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides BS1] gi|229560017|sp|B3ELQ8|RUVA_CHLPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189494839|gb|ACE03387.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides BS1] Length = 200 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D +I+V GV Y++ T L + G + H+++D ++L Sbjct: 1 MFTYFRGELIEASPDEAVIEVSGVGYLLSISATTYRQLPEPGREVLVLAHLHVKEDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + +RQ F LL S+ GVG ++A+ +LS + E+ E+I+ + + +I G+ K Sbjct: 61 FGFLEEEERQLFRLLLSISGVGPKLALAILSGLQVHEIQEAIVSNMPERLFEITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + L + S S +A++ALV LG+ + A A Sbjct: 121 AARIVLELRDRILKL-------RPSGGTKSVSRLSESSMRDDAVNALVTLGFLRSVAQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V L +N ++R AL Sbjct: 174 VTESLTSLRN-PQVEDLVRDAL 194 >gi|114765389|ref|ZP_01444504.1| Holliday junction DNA helicase motor protein [Pelagibaca bermudensis HTCC2601] gi|114542232|gb|EAU45262.1| Holliday junction DNA helicase motor protein [Roseovarius sp. HTCC2601] Length = 224 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G IE ED++LIDV+GV Y++YC R L+ L G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRIEYKGEDHLLIDVRGVGYVVYCSDRVLAGLPGPGEAAALYTDLMVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++WF LL +VQGVGA+ ++ +L + + +I L + I GI K Sbjct: 61 YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDGTAIKAAKGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS----------------MPSFAINAI 164 A R++ ELK KA + ++ + + S A+ Sbjct: 121 AQRVVNELKDKAPMVMAMGAGPTASPGDDVLEDPSPAPAARRAPAPRPAPAAAPAQSEAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGY +A AV A +++IR AL+ ++ Sbjct: 181 SALSNLGYAPGEAAGAVAQAAGDLPE-ATTAELIRAALKLLA 221 >gi|289209177|ref|YP_003461243.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix] gi|288944808|gb|ADC72507.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix] Length = 201 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + V+ID GV Y + P+ TL+ L + G L +R+D +L Sbjct: 1 MIARLEGTLISREVNGVVIDAGGVGYEVEVPLSTLAALPEPGATVVLTTHLVVREDAHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ DR F L V G+GA++A+ +LS EL I + +A++PGI + Sbjct: 61 FGFMHKRDRDLFRRLIRVNGIGAKLALAMLSTYAGDELAGLISGGDVTGLAKVPGIGKRT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL + + + + + A++AL +LGY + A Sbjct: 121 AERVVLELGERLAEMGFAAAPGGADAGAD----IPGAAMDGEALAALESLGYPRASAEKM 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +V + + ++RLALRA Sbjct: 177 VAAVRDQADS---VESLVRLALRA 197 >gi|323341472|ref|ZP_08081713.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus ruminis ATCC 25644] gi|323091083|gb|EFZ33714.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus ruminis ATCC 25644] Length = 203 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I ++ Y++++ G+ Y+I + +++ +R+++I L Sbjct: 1 MYEYLIGTITQVFPAYIVVENNGIGYLINVANPFRFKSDETKQE-KIYLHQIVRENEIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L SV G+G + A+ +L+ V ++ + + + PGI K Sbjct: 60 YGFSDFNEKQLFLKLISVSGIGPKSALAILANEDHNGFVSAVNNDDDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L S + + + + A+ AL+ LGY + + Sbjct: 120 AKQIILDLKGKLGGLES--GKPLKGQQDLEIVAEQTSPYLKEALEALLALGYTKTEVKKT 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +L + + D + +R ALR + Sbjct: 178 GRKLLDFKGDSTD--EYLRQALRLM 200 >gi|189345865|ref|YP_001942394.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245] gi|229560015|sp|B3EFD2|RUVA_CHLL2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189340012|gb|ACD89415.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245] Length = 203 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 99/202 (49%), Gaps = 5/202 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D ++DV G+ Y T L G+ L+ +++D L Sbjct: 1 MFAYFRGRLTSAMPDEAVVDVSGIGYRFLVSAFTYRQLPPPGEDVLLYAHLSVKEDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +RQ F LL GVG ++A+ VLS + E+ E+I+ + + I G+ K Sbjct: 61 YGFSSESERQLFRLLLLTTGVGPKLALAVLSGLQVHEVHEAIMANAPERLYGISGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + +S + ++ + + +A++AL+ LG+ + A A Sbjct: 121 AARIILELRDRILKMSPDGGKTIASGSGGNLAL----QIKDDALNALITLGFSKPAAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V +L+ ++ ++++ AL Sbjct: 177 VTGILEGNPSL-SVEEVVKSAL 197 >gi|197121426|ref|YP_002133377.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K] gi|229470528|sp|B4UFY0|RUVA_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|196171275|gb|ACG72248.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K] Length = 197 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +D+ ++DV GV Y+++ +L+ L G+ L V TH+R+D + L Sbjct: 1 MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F L V+GVG R A +LS I A EL +++ + + ++ GI K Sbjct: 61 YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++L+ + + +AL+NLGY QA Sbjct: 121 AERLVLELKEKLVALARAAGPARAGAEAD---------VLEQLRTALLNLGYRPPQAEG- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ ++R AL+ + Sbjct: 171 VAEALRDSAEGRPLDDLLREALKRL 195 >gi|188590168|ref|YP_001920351.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str. Alaska E43] gi|251779255|ref|ZP_04822175.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|229560021|sp|B2V337|RUVA_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188500449|gb|ACD53585.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str. Alaska E43] gi|243083570|gb|EES49460.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 198 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DY++I+ G+ Y I+ T+S + G+ +++E +R+D I L Sbjct: 1 MYEYIKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKIYIEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F LL S+ GVGA+ A+ +LS L +II + K + + GI KI Sbjct: 61 YGFESLEELDMFKLLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGTGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S + ++C+++ A+SAL++LGY + +A Sbjct: 121 AGRIILELKDKLKS-----DELLNCIDEFDDVTQDNSLALSEALSALISLGYTEKEAEKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K E II+ AL + Sbjct: 176 LKDVDKSE----SVENIIKSALVKL 196 >gi|93005514|ref|YP_579951.1| Holliday junction DNA helicase RuvA [Psychrobacter cryohalolentis K5] gi|123386742|sp|Q1QCY6|RUVA_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|92393192|gb|ABE74467.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter cryohalolentis K5] Length = 207 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I P+ + L ++ + +++ H+R+D Sbjct: 1 MIGLINGQVQYLMAPTACVMTTSGVGYDIELPLPSFCQL-RLNEQASIWTHFHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R F L + GVGA++A+ +LS ++A EL + + + +IPGI K Sbjct: 60 LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQDSEDALTRIPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K ++ V + A I + S AL++LGY + +A Sbjct: 120 TAQRLLIELKDKLKNIE--VDSSHLEFAMQPAPISAEGSIIAEVEGALISLGYKEREAQQ 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 A+ + + AD +++ L+ Sbjct: 178 AIKAAKSNGETFADTQSLLKATLQQ 202 >gi|294085860|ref|YP_003552620.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum marinum IMCC1322] gi|292665435|gb|ADE40536.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum marinum IMCC1322] Length = 207 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + + +IDVQGV Y++ RT L T+ E +R+D + L Sbjct: 1 MIAQLRGILSHTADTHAIIDVQGVGYLVNISSRTQGQLAAQDGAVTVLTEMIVREDSMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LL +VQGVGA+ AM +LS ++ +L +I+ + ++A+ G+ KI Sbjct: 61 YGFHDASERDAFRLLITVQGVGAKAAMAILSVLSPADLSSAIMAGDKAMVARADGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL K S+ ++ S +A+SAL+NLGYG+ +A Sbjct: 121 AQRVVNELAEKIGRFPSLGDGLTINISGVTGGEDLPGASAMGDALSALINLGYGRSEAHA 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A++ V ++ + D S +I ALR I Sbjct: 181 ALLRV-QQAGDADDLSGLIAAALREI 205 >gi|297584758|ref|YP_003700538.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens MLS10] gi|297143215|gb|ADH99972.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens MLS10] Length = 208 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 11/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + + + + +DV GV Y+I+C + + T+F H+R+D IRL Sbjct: 1 MIEQIRGTLLYIETETITVDVHGVGYLIHC-GNPYRFQEWMNEELTVFTYQHVREDAIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + V G+G + A+ + + ++V +I ++ K + + PG+ K Sbjct: 60 YGFRFREERKLFEKMLQVSGIGPKGALAIATSGHPGKVVAAIESEDEKFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVV------QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A +++ +LKGK L + Q+ ++ V E+ + P A+ AL LGY Sbjct: 120 ARQMILDLKGKLGELLPDLNDHNEGQKPVNAVMNEREPVSDNPEL-DEALEALKALGYVD 178 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + VL E D IR AL+ + Sbjct: 179 RELQK-IKPVLSGESMTTD--AYIRRALQEL 206 >gi|21220019|ref|NP_625798.1| Holliday junction DNA helicase RuvA [Streptomyces coelicolor A3(2)] gi|20455268|sp|Q9L290|RUVA_STRCO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|6822215|emb|CAB70921.1| holliday junction DNA helicase [Streptomyces coelicolor A3(2)] Length = 201 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +I+V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSTGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + Q +++ AL+ ++ Sbjct: 170 VSAVAPQAEAAGGTPQVGALLKAALQTLN 198 >gi|327314021|ref|YP_004329458.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289] gi|326944672|gb|AEA20557.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289] Length = 205 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI I+G + L +++ QGV Y + + T S + L+V T R D Sbjct: 1 MIEYIRGELADLTPALAVVEAQGVGYALNISLNTYSAIQGR-TPVKLYVHEAIMTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R + LL +V GVGA +A +LS +T EL I + K++ + GI Sbjct: 60 SYTLYGFASRQERSLYRLLITVSGVGANIARMILSSLTPAELCNVIANGDEKMLKTVRGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPGTPAVNTAIKDEAVSALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L + ++ Q+++LAL+ I Sbjct: 177 SAKVVVSILTDQPDLP-VEQVVKLALKMI 204 >gi|260558373|ref|ZP_05830569.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68] gi|260075547|gb|EEW63853.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68] Length = 200 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++ + Y I K+ ++V +R+D L Sbjct: 1 MYEYLTGVVTFINPYYIVVETNSIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + A+ +++ + L++++ + + + PG+ K Sbjct: 60 YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK LS + + A+ AL LGY + Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEANTKDATA-----LSEAMEALSALGYSDREIKRV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + KE + + +R AL+ + Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197 >gi|251798377|ref|YP_003013108.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2] gi|247546003|gb|ACT03022.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2] Length = 212 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 8/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + +YV++DV+ V Y ++ P + GK G T+++ H+R+D I L Sbjct: 1 MIDFLRGLISHVESEYVVLDVRDVGYQVFTP-NPYAFAGKEG-TVTIYIHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F L V G+G RVA+G+L+ ++ +I +N + ++PGI K Sbjct: 59 YGFESREEQTLFRKLLEVSGIGPRVALGILAGGRPDAVIGAIQQENIAFLTRLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174 A R++ +LK K ++ + + + + A L LGY Sbjct: 119 AQRMILDLKDKLAGFATDAGLLAAAGLAPHQPVSAASAQQGAGTAWEEARDGLSALGYTA 178 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + A ++ +++ AL+ + Sbjct: 179 AELDKAWSALAPSVTADETVDSLMKRALQQL 209 >gi|302561707|ref|ZP_07314049.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus Tu4000] gi|302479325|gb|EFL42418.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus Tu4000] Length = 201 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RVGQPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F+LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFVLLQTASGVGPRLAQAMLAVHSPDALRGAVATGDEKALTAVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + V + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAVGAPVTSGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206 V +V + + Q+++ AL+ ++ Sbjct: 170 VAAVTPQAEAAEGTPQVGQLLKAALQTLN 198 >gi|329945621|ref|ZP_08293354.1| Holliday junction DNA helicase RuvA, N terminal domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528624|gb|EGF55589.1| Holliday junction DNA helicase RuvA, N terminal domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 218 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 9/213 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L +IG+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RIGEEVLVHTELVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFTDVDERDSFRTLMSAKGVGAKLALAMLAVHTPNMLRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSS-----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++ ++ K ++ + + +K + + ++ALV LG+ + Sbjct: 120 AQRVILDVADKLGPVTGDDADTAMPAAKAIGDKGVETFSEGAQPSADVVAALVQLGWNEA 179 Query: 176 QATTAVVSV---LKKEKNIADDSQIIRLALRAI 205 A AV +V + D + ++R +LR + Sbjct: 180 SARQAVTAVEADYAEAGENPDMAALLRASLRWL 212 >gi|257455268|ref|ZP_05620503.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60] gi|257447230|gb|EEV22238.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60] Length = 206 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + L V++ GV Y I P+ + ++ TL+ +R+D Sbjct: 1 MIGLIQGQVHHLMAPTVVVMTTAGVGYEIEMPLNAFCQV-QLNQSVTLWTHFLVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFLS DR+ F LL V GVGA++A+ ++S +T EL + ++ + + +IPG+ K Sbjct: 60 LFGFLSHSDREVFRLLLKVNGVGAKMALAMMSTVTVQELHQFVMNNDELALTRIPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K L + + + + L+ LGY +A Sbjct: 120 TAQRLIVELKDKIKHLGDT--SGFAPSLPLETDSGNEGIIIAEVEAGLIALGYRDKEAQA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + +++ +L+ ++ Sbjct: 178 AIKLAKSAIDSPLTIQNLLKASLKNLA 204 >gi|260437054|ref|ZP_05790870.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM 2876] gi|292810363|gb|EFF69568.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM 2876] Length = 198 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + + + ++++ GV Y I P + L IG ++ ++++D + L Sbjct: 1 MITYIVGELTYIDNNTIILEACGVGYEITVPESVIPSLPGIGSSIKIYTYQNVKEDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F L +V G+G + A+ +LS I+ EL ++I + K I PGI K Sbjct: 61 YGFLTMDDLKIFKQLITVNGIGPKGALSILSVISPDELRLAVISDDVKKIQSAPGIGSKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K V + S A+SAL++LGY ++ +A Sbjct: 121 AQKLIIELKDKLKIED--------VVYDLHDEKDIVKSVRDEAVSALISLGYSNSESVSA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +++ E I++ AL+ ++ Sbjct: 173 VSALVITEN--MTSEDILKQALKKLA 196 >gi|288930025|ref|ZP_06423866.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317 str. F0108] gi|288328684|gb|EFC67274.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317 str. F0108] Length = 205 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG++ L +I+ GV Y + + T + + + D LFV T R D Sbjct: 1 MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYTAI-QGKDKVKLFVHEALVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R+ + LL SV GVGA A +LS ++ EL I + K++ + GI Sbjct: 60 SYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPAELCNVIAAGDDKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A RI+ +LK K + +S V Q++S A + + + A+ AL LG+ Sbjct: 120 GAKTAQRIIVDLKDKIV--TSGVAQELSVPTNANATVMNT-AVKDEAVGALTMLGFAPSA 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +LK++ + Q+++ AL+ I Sbjct: 177 SAKVVVEILKEQPELP-VEQVVKAALKMI 204 >gi|294341429|emb|CAZ89846.1| Holliday junction ATP-dependent DNA helicase ruvA [Thiomonas sp. 3As] Length = 190 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ TL L G TL + T +R+D L Sbjct: 1 MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAAGHAVTLLIHTVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+G R+A+ VLS ++ +E+ +++ Q++ ++PGI K Sbjct: 61 YGFATAAERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + A + + AL+ LGY + +A Sbjct: 121 AER-------------LLLELKGKLGADLGSAATAAAGSASDVLQALIALGYSEREA--- 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K IR AL++++ Sbjct: 165 -AAAAKALPEGCSVDDGIRQALKSLA 189 >gi|256788881|ref|ZP_05527312.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24] gi|289772769|ref|ZP_06532147.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24] gi|289702968|gb|EFD70397.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24] Length = 201 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +I+V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVATLAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSTGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + Q +++ AL+ ++ Sbjct: 170 VSAVAPQAEAAGGTPQVGALLKAALQTLN 198 >gi|114566956|ref|YP_754110.1| Holliday junction resolvasome DNA-binding subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318040|sp|Q0AX15|RUVA_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114337891|gb|ABI68739.1| Holliday junction DNA helicase subunit RuvA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 199 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 12/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D ++IDV GV Y + R L + G+ + + +++ +L Sbjct: 1 MIAFLKGAVFERRPDSIIIDVNGVGYEVNIHSRLFPRLPQRGEPILIHTFLQVLENEFKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + + F L +V G+G++ A+ VLS + +I Q+ K + +IPG+ K Sbjct: 61 FGFLDQDELRLFKTLLTVSGIGSKGALAVLSTMEPLVFYRAIASQDEKTLVRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L V + + AL LGY + + A Sbjct: 121 AQRMIFELQDKVPELKLVEVE------------KEQRPLLDELMEALEILGYSRSEVLPA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 ++ + + ++ + I+L L+A Sbjct: 169 IMDLNRNKQLGNIVEENIKLVLKA 192 >gi|220916123|ref|YP_002491427.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans 2CP-1] gi|254766937|sp|B8JF04|RUVA_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219953977|gb|ACL64361.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans 2CP-1] Length = 197 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +D+ ++DV GV Y+++ +L+ L G+ L V TH+R+D + L Sbjct: 1 MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F L V+GVG R A +LS I A EL +++ + + ++ GI K Sbjct: 61 YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++L+ + + +AL+NLGY QA Sbjct: 121 AERLVLELKEKLVALARAAGPARAGAEAD---------VLEQLRTALLNLGYRPPQAEG- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ +++R AL+ + Sbjct: 171 VAEALRDSAEGRPLDELLREALKLL 195 >gi|90418966|ref|ZP_01226877.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas manganoxydans SI85-9A1] gi|90337046|gb|EAS50751.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas manganoxydans SI85-9A1] Length = 206 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 134/206 (65%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+V++DV GV Y+ +C RTL+ L G+ LF++T++R+D +RL Sbjct: 1 MIGKLKGTVDEIGEDHVVVDVHGVGYVAFCGARTLAALPGEGEAVVLFIDTYVREDMLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ WF LLQ VQGVGARVA+ V+ ++A +L ++ LQ+ ++A+ PG+ K+ Sbjct: 61 YGFATRAEQDWFRLLQMVQGVGARVALAVIGTLSAGDLANAVALQDKAMVARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + S D S K + + +A+SALVNLGY +DQA A Sbjct: 121 AARIVAELKDKAPAFSG-AGSDESLGLKRDIGGGTAAAPVADAVSALVNLGYPRDQAAEA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V LK D +++IRL L+A+S Sbjct: 180 VAKALKDAGEAPDSAKLIRLGLKALS 205 >gi|118617340|ref|YP_905672.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99] gi|183982124|ref|YP_001850415.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M] gi|166230572|sp|A0PPD2|RUVA_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560107|sp|B2HN62|RUVA_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118569450|gb|ABL04201.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99] gi|183175450|gb|ACC40560.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M] Length = 197 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MISSLRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTDARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ R F+ L SV GVG R+AM LS A L +++ + + ++PGI + Sbjct: 60 YGFVDGETRDLFLTLLSVSGVGPRLAMATLSVHDANGLRQALADGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + A + + + ALV LG+ QA A Sbjct: 120 AERMVVELRDKVG----------PAGSAATAPAVNGHTVRAPVVEALVGLGFAAKQAEEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + S + R AL + Sbjct: 170 TDKVLAGDGEATTSSAL-RAALSLL 193 >gi|168187973|ref|ZP_02622608.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str. Eklund] gi|169294186|gb|EDS76319.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str. Eklund] Length = 200 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG GL +DY++++ + Y IY T++ + I + +++E +R+D I + Sbjct: 1 MFEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R F LL ++ GVGA+ A+ +LS + L SI+ ++ K++ + PGI KI Sbjct: 61 YGFLREDERAMFNLLLTISGVGAKAALSLLSISNVSNLKVSIMQEDYKMLTRAPGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + ++D+ V A ALV LG+ Q +A A Sbjct: 121 AQRITLELKDKIEKI---YEEDVENVKDISETSIDAGRKYDEATEALVALGFTQKEAEKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + QII+ +LR + Sbjct: 178 LKNIDINK----TIEQIIKDSLRYL 198 >gi|323706513|ref|ZP_08118072.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534143|gb|EGB23935.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium xylanolyticum LX-11] Length = 186 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I DYV+I+ G+ + I P TLS L + L+ H+++D +L Sbjct: 1 MIDYIKGHIVEKGIDYVVIETLGIGFKIIVPRSTLSHLTNTSEIIKLYTYMHVKEDGFQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F L +V GVG + A+ +LS I+ ++I +SK I + PGI K Sbjct: 61 YGFLTTNEVEIFKKLIAVNGVGPKAAVSILSTISIEGFYDAIRNSDSKAIEKSPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K AH + + + + AL++LGY + ++ A Sbjct: 121 AQRIILELKDKLTF----------------AHDVKLDDLSNDVVDALLSLGYTKQESIKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + ++ ++ AL+ + Sbjct: 165 LEGV-----DCSNLESALKEALKKL 184 >gi|182415003|ref|YP_001820069.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1] gi|229560110|sp|B1ZN17|RUVA_OPITP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|177842217|gb|ACB76469.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1] Length = 200 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 5/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + +++V G Y ++ P+ T L G L R+D L Sbjct: 1 MITSIQGTLVSATPLQAIVEVAGFGYEVHIPVTTAERLPAAGAAVKLHTLVIYREDSQTL 60 Query: 61 FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S +R +F L+ V GVG ++A+ ++SR+ L +I + + +A+ PGI K Sbjct: 61 YGFASPAERDFFRLMIEHVTGVGPKMALSIMSRLALPSLESAIRMGDVASLAKCPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL+ K + A S +A++ALV LGY A Sbjct: 121 TAERLVVELRTKV----GATGAAPGLATQPAAAASPGASAHRDAVAALVALGYRSADADE 176 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 AV A +I+ AL Sbjct: 177 AVRRASLALGEAATTESLIKKAL 199 >gi|296283076|ref|ZP_06861074.1| Holliday junction DNA helicase RuvA [Citromicrobium bathyomarinum JL354] Length = 209 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 111/204 (54%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ +IDV GV Y+++C RTL LG G LF + + ++ +RL Sbjct: 11 MIAKLTGTLDATGPDWAVIDVGGVGYLVHCSTRTLDALGSEGGEARLFTDLQVSENDMRL 70 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL SVQGVG++VA+ +LS ++A E+ + ++ ++A+ G+ K+ Sbjct: 71 LGFAEAAERDWFRLLTSVQGVGSKVALAILSVLSAGEVQAACASGDAAMVARANGVGPKL 130 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ KA +L A + +A+SAL NLG+ A A Sbjct: 131 AGRIVNELQDKAGAL--------PVAPGGVAVAAPKGGASADAVSALENLGFKPAIAAKA 182 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A + ++IR+AL+ Sbjct: 183 VAEAMGELGEGASEGELIRVALKK 206 >gi|289422389|ref|ZP_06424235.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius 653-L] gi|289157224|gb|EFD05843.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius 653-L] Length = 207 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 5/202 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG I+ + DY+LI+ G+ Y + TLS L IG ++ + +R+D I L Sbjct: 1 MIGYIKGIIDEIGIDYILIENNGIGYKLLVSTTTLSQL-SIGQEAKIYTKMIVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + + F LL SV VG +V MG+LS + II + +++ PG+ K Sbjct: 60 CGFYSKEEEEMFKLLTSVSKVGTKVGMGILSFAPPARIQSIIINSDVTAMSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + M + I S AISAL+ LGY +A + Sbjct: 120 AERIILELKDKVGKIVIDGLDTMENLPLSGKEIAIDNS-EDEAISALIALGYTSSEAQES 178 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V V + D II+ AL Sbjct: 179 VNFVKQPGM---DVEVIIKKAL 197 >gi|330444140|ref|YP_004377126.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58] gi|328807250|gb|AEB41423.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58] Length = 207 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 M I+G + + V ++ QGV Y I+ R L ++ +++ + Sbjct: 1 MYDYIRGILICVRSGVVTLECQGVGYSIFVTERWGCDLIAASQKEVLIYTHAVLKETEHT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F +L S G+G + A +L+ + +L ++ ++ K ++ IPGI K Sbjct: 61 LYGFCSREERDCFRMLISFSGIGPKFANAILNSLPIKQLCCAVHNEDVKALSSIPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K S+ + + S + S + + ALV LGY + A Sbjct: 121 TAEKLMLDLKQKLPSVLPLGGGETSPWQPLEL------SHREDGVQALVGLGYSKVMAEH 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + LK+ A ++++ +AL+ Sbjct: 175 MIAEALKELPKGASLTEVLPIALKK 199 >gi|269219375|ref|ZP_06163229.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211168|gb|EEZ77508.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848 str. F0332] Length = 196 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 99/207 (47%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ + +I+ GV Y + TL+ L ++G + +R+D + L Sbjct: 1 MIAALRGSVLSVEPTAAVIEAGGVGYAVQATPATLAGL-RVGQEAFVHTSLVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F +LQ+V GVG ++A+ +L+ +T L +++ + + ++ G+ K Sbjct: 60 FGFADADEREVFDVLQTVSGVGPKLALTILATLTPDRLRQAVANADIAALTRVSGVGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E + + S + + + ++ALV LG+ + A +A Sbjct: 120 AQRLVLE-----------IGAKLGPRRGGDLEAPSSNARSGDVVAALVGLGFSERDAESA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V K A+ +++R +L+ + Sbjct: 169 FSQVEKATPE-AEVPELLRASLKILGA 194 >gi|318075775|ref|ZP_07983107.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actF] Length = 210 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 6/189 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V G+ + C TLS L +IG+ + +R+D + L Sbjct: 1 MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ ++ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + ++ P + +ALV LGY +A A Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPPPWTEQLHTALVGLGYQPREAEEA 174 Query: 181 VVSVLKKEK 189 V +V + + Sbjct: 175 VEAVTPQAE 183 >gi|116620084|ref|YP_822240.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus Ellin6076] gi|122255537|sp|Q02AG7|RUVA_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116223246|gb|ABJ81955.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus Ellin6076] Length = 197 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 9/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + VL++ GV Y + P+ T + L +G L + TH+R+D + L Sbjct: 1 MIALLRGLVVEKHPNQVLVETGGVGYDVTIPVSTFTKLPDLGGEVRLRIYTHVREDVLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L SV G+G +A+ +LS + A +L+ SI + + ++PG+ K Sbjct: 61 YGFLTQDEKALFEKLISVSGIGPTLAVKILSGLAAADLILSIRRGEVEKLVKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + ++ + +SAL+NLG + QA A Sbjct: 121 AERMVLELRDKLPAATGEEPGAPAA--------EALSPIDQDVLSALLNLGCARPQAEAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K D + R AL Sbjct: 173 VRKA-KAAGASLDFEPLFRRAL 193 >gi|313114599|ref|ZP_07800107.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf. prausnitzii KLE1255] gi|310623063|gb|EFQ06510.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf. prausnitzii KLE1255] Length = 203 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V++ GV Y CP L +G T++ + ++ + L Sbjct: 1 MIYCLTGKIVKKSMNAVVLSCGGVGYYAQCPASVAGALPGVGKEATIYTVMSVTENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F +L +V GVG +V + +LS + + +I + K G+ K+ Sbjct: 61 YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ ELK K + + +D++ + + + AI+ALV+LGY Q +A Sbjct: 121 AQRIVLELKDKVAKGFVDGISLEDVAGASAD----TQASQGSSQAIAALVSLGYSQSEAA 176 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + +II+LALR+++ Sbjct: 177 LAVSKIDAALP----VEEIIKLALRSMA 200 >gi|229829132|ref|ZP_04455201.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM 14600] gi|229792295|gb|EEP28409.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM 14600] Length = 199 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +E + + +++D G+ Y I P +LS + + ++ +R D L Sbjct: 1 MFSYIQGRVEEINPEGIVLDHDGIGYEIGLPQSSLSQI-RRQMQLRVYTYLQVRDDGFSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL D F LL V G+G + A+ +L ++ +L +I + K IAQ PGI K Sbjct: 60 FGFLKREDLDLFKLLIGVGGIGPKGALSILGVLSVDQLRFAIAAGDDKTIAQAPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ K Q + +A S AI AL LGY +A A Sbjct: 120 AQRVILDLRDKID-----FTQTLEAQLDSKASDRSSDDIRGEAILALNALGYSSAEALQA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + +IR L+ ++ Sbjct: 175 IRDL---DISSMSVEDLIRAGLKELA 197 >gi|225572217|ref|ZP_03781081.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM 10507] gi|225040279|gb|EEG50525.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM 10507] Length = 201 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G+ E +L++ G+ Y I+ P+ G + H+R+D ++L Sbjct: 1 MIAFMKGTLAGIEETKILLEHDGIGYEIFIPMDGRVDRLYTGQELMVHTYLHVREDVLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F LL V GVG + A+G+LS I+A EL +++ ++ K I++ PGI K Sbjct: 61 YGFLTRDDLEIFRLLLGVNGVGPKAALGILSAISADELRFAVLAEDIKTISKAPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K +L ++ + A + A AL LGYG QA A Sbjct: 121 AQKLVLELKDKL-NLQDAFEKKLEHEYSSSAS-QEITDARQEAAEALTALGYGSTQALQA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V EK D +++ AL+ + Sbjct: 179 VRKVDGWEK--MDVETLLKAALKNM 201 >gi|217964320|ref|YP_002349998.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23] gi|290893935|ref|ZP_06556911.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-071] gi|254766966|sp|B8DHL5|RUVA_LISMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|217333590|gb|ACK39384.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23] gi|290556473|gb|EFD90011.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-071] gi|307571114|emb|CAR84293.1| holliday junction DNA helicase [Listeria monocytogenes L99] gi|313608655|gb|EFR84502.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL F2-208] Length = 201 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+E +D I+LAL+ + Sbjct: 177 IPKLAKEEDLTSD--AYIKLALQLM 199 >gi|259417974|ref|ZP_05741893.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B] gi|259346880|gb|EEW58694.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B] Length = 229 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+V+IDV+GV YI+YC RTL+ L +G+ L+ E +R+D ++L Sbjct: 1 MIGKLTGRLEYRAPDHVMIDVRGVGYIVYCSDRTLASLPSVGEAVQLYTELLVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++++W LL SVQGVGA+V++ +LS + + +I L + + G+ K Sbjct: 61 FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----------- 166 A RI+ +LK KA ++ + + + + E + + A A Sbjct: 121 AQRIVLDLKDKAPSVMAMGGTITEALEGPDLEVVVEPASDAPVKPARKAAPKAPTGAAAA 180 Query: 167 -------LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGY A AV A ++++IR ALR ++ Sbjct: 181 SAGALSALGNLGYSPSDAAGAVAEAAADNPE-AGEAELIRAALRLLA 226 >gi|227496221|ref|ZP_03926520.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis DSM 15434] gi|226834252|gb|EEH66635.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis DSM 15434] Length = 209 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 8/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+V GV TL+ L ++G+ T+ E +R+D + L Sbjct: 1 MIASLRGTVLDISLTGAVIEVGGVGMAFQATPTTLAGL-RVGEEGTVHTELVVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +RQ F +L +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADADERQCFRVLLGAKGVGAKLALAILAVHTPDALRRAIASQDVAALKRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ++ K L+ QD++ + QA + + ++ALV LG+ + A A Sbjct: 120 AQRVIIDVGDKLGPLTG---QDLAA-ERPQAPAETGEEANPDVVAALVQLGWNEATARQA 175 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAI 205 V +V +++ +++R +LR + Sbjct: 176 VGAVESGAQEQGEALSVPELLRASLRWL 203 >gi|154498068|ref|ZP_02036446.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC 29799] gi|150273058|gb|EDN00215.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC 29799] Length = 201 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + ++D GV Y TL+ L + G+ TL+ ++R+D + L Sbjct: 1 MFYYVKGPVVHMAPYLAVVDCGGVGYACRTTNNTLARL-RKGETATLYTHLNVREDAMEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F LL SV GVG + A+ +LS + L SII + K + PGI KI Sbjct: 60 YGFASENELSCFQLLISVSGVGPKAALSILSSTSPEGLATSIITGDEKALTVAPGIGKKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S I + A LGY Q +A A Sbjct: 120 AQRIILELKDKLAKGQLSTPGGESYGGTGVTVIPQNKASEAAAAL--AVLGYSQAEAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + +II+ AL+ + Sbjct: 178 LKNI---DMETLALEEIIKQALKKM 199 >gi|146277278|ref|YP_001167437.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17025] gi|166200252|sp|A4WRW8|RUVA_RHOS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145555519|gb|ABP70132.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17025] Length = 224 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G ++ D+VLIDV+GV YI++ RTL+ + G+ L+ E +R+D ++L Sbjct: 1 MIGKISGILDFRGPDHVLIDVRGVGYIVHVSDRTLAAMPAPGEGVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A + +I L +++ I PG+ KI Sbjct: 61 FGFTTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGVARAISLGDARSIQAAPGVGPKI 120 Query: 121 ASRIMTELKGKAISL----------------SSVVQQDMSCVNKEQAHICSMPSFAINAI 164 A R++ ELK KA +L + + +A + +A+ Sbjct: 121 AQRVVLELKSKAPALMVMGGAAPARAAAVVEETPEEPAPRRKPSTRAAPPPAANHTGDAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEK 189 SAL NLGY A AV Sbjct: 181 SALTNLGYQPSDAAQAVAQASGDNP 205 >gi|294674697|ref|YP_003575313.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23] gi|294472323|gb|ADE81712.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23] Length = 200 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + L ++ GV Y + + T S + + L+V +R+D L Sbjct: 1 MIEYIKGELTELTPALATVEACGVGYGLNISLNTFSAI-QGKKEVKLYVYEAIREDAHVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R+ F+LL +V GVGA A +LS ++ EL +I + N+K+I I GI Sbjct: 60 FGFVNKKEREMFLLLITVSGVGANTARMMLSGMSVAELCNAISMGNAKLIQGIKGIGKMT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ K ++L + Q AI+AL LG+ Sbjct: 120 AQRIIVDLRDKIVTLGISDE----IPAGGQIAAPVNNQVKDEAIAALTMLGFAPAPTQKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L+ N A ++++LAL+ I Sbjct: 176 VLQILQANPN-APVEEVVKLALKQI 199 >gi|317505321|ref|ZP_07963249.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella salivae DSM 15606] gi|315663535|gb|EFV03274.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella salivae DSM 15606] Length = 205 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG + L +++ GV Y + + T S + + L+V T R D Sbjct: 1 MIEYIKGQLAELTPALAVVEAAGVGYALNISLTTYSGI-QGKKEVKLYVHEALTTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF++ +R+ + LL +V GVGA A +LS + TEL +I + ++I + GI Sbjct: 60 SFTLFGFVNKQERELYRLLITVSGVGANTARMMLSSMNPTELCNAIANGDERMIKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +L+ K ++ + V E+A + A++AL LG+ Sbjct: 120 GLKTAQRIIVDLRDKIMASGIANEL---HVGGEKAESTLNNAVKEEAVAALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 VVS+L+K+ N+ Q+++ AL+ + Sbjct: 177 IAKVVVSILQKQANLP-VEQVVKEALKLL 204 >gi|332653059|ref|ZP_08418804.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16] gi|332518205|gb|EGJ47808.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16] Length = 213 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + V+ID GV Y TLS L K G+ +F ++R+D + L Sbjct: 12 MFYYLNGTVAHIEPYLVVIDCGGVGYACRTTSYTLSAL-KKGEKGKVFTHLNVREDAMEL 70 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F L SV GVG + A+ +LS T L SII + K + GI KI Sbjct: 71 YGFATQEELNLFQQLISVSGVGPKAALSILSSNTPANLALSIITGDEKALTCAQGIGKKI 130 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +V + I + A +AL LGY Q + A Sbjct: 131 AQRVILELKDKLAKGQAVNGAGETYGGTGVTVIPE--NKLSEASAALAVLGYTQGEINVA 188 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + QII+ AL+ + Sbjct: 189 LKGI---DLDSLTLEQIIKQALKKM 210 >gi|46907761|ref|YP_014150.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes serotype 4b str. F2365] gi|47094257|ref|ZP_00231966.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b H7858] gi|226224134|ref|YP_002758241.1| Holliday junction DNA helicase (ruvA) [Listeria monocytogenes Clip81459] gi|254824408|ref|ZP_05229409.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J1-194] gi|254852157|ref|ZP_05241505.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL R2-503] gi|254931468|ref|ZP_05264827.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HPB2262] gi|254992897|ref|ZP_05275087.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-064] gi|255520701|ref|ZP_05387938.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J1-175] gi|300764800|ref|ZP_07074790.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL N1-017] gi|67461453|sp|Q71ZD7|RUVA_LISMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|259495649|sp|C1KVI0|RUVA_LISMC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46881030|gb|AAT04327.1| holliday junction DNA helicase RuvA [Listeria monocytogenes serotype 4b str. F2365] gi|47017363|gb|EAL08187.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b H7858] gi|225876596|emb|CAS05305.1| Putative Holliday junction DNA helicase (ruvA) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605460|gb|EEW18068.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL R2-503] gi|293583020|gb|EFF95052.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HPB2262] gi|293593643|gb|EFG01404.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J1-194] gi|300514476|gb|EFK41533.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL N1-017] gi|328474893|gb|EGF45693.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 220] gi|332311975|gb|EGJ25070.1| Holliday junction ATP-dependent DNA helicase ruvA [Listeria monocytogenes str. Scott A] Length = 201 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+E +D I+LAL+ + Sbjct: 177 IPKLSKEEDLTSD--AYIKLALQLM 199 >gi|229586656|ref|YP_002845157.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5] gi|259495654|sp|C3PNA4|RUVA_RICAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|228021706|gb|ACP53414.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5] Length = 203 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLNLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS + + + P + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKHITPVASNEVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197 >gi|303238091|ref|ZP_07324631.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN] gi|302481726|gb|EFL44781.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN] Length = 205 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG + L ++D GV Y + + T + + LFV R D Sbjct: 1 MIEYIKGELAELTPALAVVDANGVGYGLNISLNTYGVI-QGKKSVKLFVHEAISMGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 60 SYTLYGFANKQERGLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K + + V+ + + A+ AL LG+ Sbjct: 120 GLKTAQRIIVDLKDKIVQSGIAEEL---HVSSQPNAANVNNAVKDEAVGALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +L ++ ++ Q+++LAL+ I Sbjct: 177 SAKVVVDILTEQPDLP-VEQVVKLALKQI 204 >gi|285019190|ref|YP_003376901.1| holliday junction resolvasome, DNA-binding subunit protein [Xanthomonas albilineans GPE PC73] gi|283474408|emb|CBA16909.1| putative holliday junction resolvasome, dna-binding subunit protein [Xanthomonas albilineans] Length = 194 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYEMEAPMSTFYDLPDVGREVILFTHYAHKEDSVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQRVTGIGAKIALAVLSGVSVDAFARLITAADVTALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A S A SAL LGY A Sbjct: 121 AERMVVELRDRAADFSGGAPITGQL----------GADAVSEATSALQQLGYKP---AEA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + + +IR AL++ Sbjct: 168 AKMAREAAADGDEVAMVIRKALQS 191 >gi|326386113|ref|ZP_08207737.1| Holliday junction DNA helicase RuvA [Novosphingobium nitrogenifigens DSM 19370] gi|326209338|gb|EGD60131.1| Holliday junction DNA helicase RuvA [Novosphingobium nitrogenifigens DSM 19370] Length = 206 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 115/204 (56%), Gaps = 1/204 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ +IDV GV Y+++ RTL+ LG GD + E + + +RL Sbjct: 1 MIAKLTGLLDDTGPDWAVIDVNGVGYLVHASARTLAHLGNRGDRVVIHTELQVSETDMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R WF LL VQGVG++VA+ +LS +T EL + +S ++A+ G+ K+ Sbjct: 61 IGFASAGERAWFRLLTVVQGVGSKVALAILSALTVDELQRACAGGDSAMVARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK KA L+ + +A + S S + +A+SAL NLG+ A TA Sbjct: 121 ASRIVNELKDKAGGLAGLSGGAGITAEPGEAPVVS-GSASADAVSALQNLGFKPAVAATA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +++ A ++R+AL+ Sbjct: 180 VTKAIEELGEDASLGDLVRVALKR 203 >gi|297571393|ref|YP_003697167.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum DSM 20595] gi|296931740|gb|ADH92548.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum DSM 20595] Length = 199 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+V GV + TLS L ++G L +R+D + L Sbjct: 1 MIASLRGIVSAIGITSAVIEVGGVGMSVQATPTTLSTL-RMGAEAHLMTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F +L + G+G R A+ VL+ +T L +++ +N + ++ GI K Sbjct: 60 YGFGDIDERDVFDILTGISGIGPRTALAVLAVLTPDALRDAVATKNEAALTRVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL K + A + + ALVNLG+ + +A A Sbjct: 120 AQRMILELGSKLGPTRGSATASGADTRVVPAD--------ADVLEALVNLGWNEREAAPA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V K A ++++R AL+ + Sbjct: 172 VHEATNKMPG-ASVAELLRAALQILGS 197 >gi|182439809|ref|YP_001827528.1| Holliday junction DNA helicase RuvA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780473|ref|ZP_08239738.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf. griseus XylebKG-1] gi|229560130|sp|B1W3G3|RUVA_STRGG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|178468325|dbj|BAG22845.1| putative Holliday junction DNA helicase subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660806|gb|EGE45652.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf. griseus XylebKG-1] Length = 208 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGREARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFANDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + ++ + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGEPVG------AHIGQQGIGTPVTSGWRDQLQAALIGLGYASREADEA 173 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + E Q++R AL+ ++ Sbjct: 174 VNAVAPQAEAAVAEGTAPPVPQLLRAALQTLN 205 >gi|320534404|ref|ZP_08034887.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171 str. F0337] gi|320133379|gb|EFW25844.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171 str. F0337] Length = 217 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 8/212 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L ++G+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ++ K ++ + ++ S P + ++ALV LG+ + Sbjct: 120 AQRVILDVADKLGPVTGDDLGAARAASGTAGGQEGAADSGPEPHADVVAALVQLGWNEAS 179 Query: 177 ATTAVVSV---LKKEKNIADDSQIIRLALRAI 205 A AV SV D + ++R +LR + Sbjct: 180 ACQAVSSVTADAAAADQDPDTAALLRASLRWL 211 >gi|256827686|ref|YP_003151645.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium curtum DSM 15641] gi|256583829|gb|ACU94963.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium curtum DSM 15641] Length = 194 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D +++DV GV + + ++LS L +G + +R+D + L Sbjct: 1 MIASLKGTLVAREADGIVLDVGGVGFSVGMSTQSLSRLPSVGVTVQIHTYLQVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++ F L SV G+G +VA+ LS T L +I+ + +++IPGI K Sbjct: 61 FGFTSVKEKALFEKLLSVSGIGPKVALSALSSFTPDALTSAIMTNDVTGVSRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+G D++ +Q + S A+ L+ LG+ +A A Sbjct: 121 AQRIILELQG---------SLDVAEQTSDQMAVPSDTQLHHRALDDLLALGFSSTEAELA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK A ++ +++ AL+ + Sbjct: 172 ----LKGAPKDATEASLVQYALKRL 192 >gi|229825022|ref|ZP_04451091.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC 49176] gi|229790769|gb|EEP26883.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC 49176] Length = 204 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG +EG+ + V+IDV G+ P ++ L KI + L H+R+D ++L Sbjct: 1 MIASVKGKLEGVTTESVIIDVNGLGVEAIVPTTVINLLPKIDENIKLHTYLHVREDVMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL D +F LL +V G+G + A+ +LS + L +I+ +++K I + GI K Sbjct: 61 YGFLEKEDLDFFKLLITVNGIGPKAAIAILSSMPTDILTFAILSEDTKTIQKAQGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + + I A+ L LGY Q +A A Sbjct: 121 AKKLVLELKDKVGIIKTPQNTGSEIYDNAALTIGINSEIKDEAVQVLTALGYSQTEAVKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V E+ ++++L+L+ + Sbjct: 181 ISTVEMYEE--MTSEELVKLSLKNL 203 >gi|283457993|ref|YP_003362600.1| holliday junction resolvasome, DNA-binding subunit [Rothia mucilaginosa DY-18] gi|283134015|dbj|BAI64780.1| holliday junction resolvasome, DNA-binding subunit [Rothia mucilaginosa DY-18] Length = 209 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +IDV G +++ RTLS L + G+ T+ +R++ + L Sbjct: 4 MIASLTGRVAQVGLDHAVIDVNGFGMLVHATARTLSKL-RTGEEATVLTTMIVREESMTL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TA E+ ++ + K ++PGI K Sbjct: 63 YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S ++ + + + AL +LG+ + A+ A Sbjct: 123 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA-ISC 207 + + +K + + + ALR ++ Sbjct: 174 IDAYVKHNPSAESEPVGV--ALRGVLAS 199 >gi|288924630|ref|ZP_06418567.1| holliday junction DNA helicase RuvA [Prevotella buccae D17] gi|315607515|ref|ZP_07882510.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella buccae ATCC 33574] gi|288338417|gb|EFC76766.1| holliday junction DNA helicase RuvA [Prevotella buccae D17] gi|315250698|gb|EFU30692.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella buccae ATCC 33574] Length = 205 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG + L +I+ GV Y + + T + + + L+V T R D Sbjct: 1 MIEYIKGELTELTPALAVIEAAGVGYALNISLNTYTAI-QGKKETKLYVHEALTTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R + LL +V GVGA A +LS ++A EL I N K++ + GI Sbjct: 60 AFTLYGFFSKQERSLYRLLITVSGVGANTARMILSAMSAKELCGVISTGNDKMLKSVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K ISL D + + + A+SAL LG+ Sbjct: 120 GLKTAQRIIVDLKDKIISLGI---ADELPASGGLPSMPVDNATRDEAVSALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV++L+++ ++A +++ AL+ I Sbjct: 177 SQKVVVAILQEQPDMA-VEMVVKEALKRI 204 >gi|254294768|ref|YP_003060791.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814] gi|254043299|gb|ACT60094.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814] Length = 209 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG + + LIDV GV Y+++C RTL+ L IG T+FVET M ++ I+L Sbjct: 1 MIARLKGIVAATGDGQALIDVNGVGYVLFCGGRTLARL-TIGRENTVFVETQMSENAIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + DR WF LQ GVGA+ A+ +L +T +L+++I+L ++ + + G+ K+ Sbjct: 60 YGFETAEDRAWFSRLQDAPGVGAKAALNILDALTPAQLMDAIVLGDAASVQRAHGVGKKL 119 Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R+++E K K L SV V + + A SAL NLGY A Sbjct: 120 AERVVSEFKDKPPPAGLFSVSFAPSEGVEGLASTSTASTGSRAAAASALTNLGYQNVDAQ 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV K+ A + +I+ AL+A++ Sbjct: 180 RAVAVAAKELGEDASEGALIKAALKALA 207 >gi|322412854|gb|EFY03762.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 197 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + +K Q S AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEVPQE-------TSKAQPSTSSNNDELDEAIEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 172 IRAFFEGTSETA--EQYIKSALKLL 194 >gi|241766520|ref|ZP_04764384.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN] gi|241363253|gb|EER58812.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN] Length = 190 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSTFYNLPAVGERVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R A+ +LS + +L ++I LQ + + ++PGI K Sbjct: 61 YGFGTATERQAFRELIKISGVGPRTALSILSGMGVGDLAQAITLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + H + + ALV LGY +A Sbjct: 121 AER-------------LLLELKGKLGAEMGTHAQVTSDAQADILQALVALGYNDKEA--- 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + LK S I+LAL+A++ Sbjct: 165 -AAALKALPADVGVSDGIKLALKALA 189 >gi|159899035|ref|YP_001545282.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC 23779] gi|229560066|sp|A9AZL0|RUVA_HERA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|159892074|gb|ABX05154.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC 23779] Length = 197 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ + +D V+IDV GV I P L+ +G IGD L+ H+R+D + L Sbjct: 1 MIASVRGVVQLIGQDQVVIDVHGVGLAIAVPRTVLATIGAIGDTAQLYTHLHVREDMLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S R F LL V G+G +VA+ +LS T EL +I ++ +++++PGI K Sbjct: 61 FGFSSPAQRALFELLLGVSGIGPKVALALLSAATPEELQHAIAREDITMLSKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELKGK ++ ++ + + + + I L +LGY +A A Sbjct: 121 AARLVLELKGKF---------GVATISPQLSTNPGLLALNTELIDILTSLGYSTTEAQAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + ++ AD + +RLAL+ Sbjct: 172 LNALPADAP--ADTEERLRLALQ 192 >gi|6685961|sp|Q9ZNJ6|RUVA_CLOHI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3892649|dbj|BAA34545.1| ruvA [Clostridium histolyticum] Length = 197 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ ++Y++I+ + Y I+ T++ + IG+ L++ +R+D I L Sbjct: 1 MYEYIKGTYMGINKEYIVIENGDIGYKIHSSGYTIANMPNIGEHIMLYLTQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + + F L +V G+GA+ ++ +LS L +I+L++ K++ + PGI K Sbjct: 61 YGFGSKEELELFNKLLTVNGIGAKASLSLLSITNVENLKRAIVLEDEKLLIKAPGIGKKT 120 Query: 121 ASRIMTELKGKA-ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K ++L +Q D + I A AL++LGY + + Sbjct: 121 AQRIILELKDKLDVNLDEGIQTDSN-------DIKVSSKILEEAKEALMSLGYSEKECEK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A+ +V +KE II+ +L+ + Sbjct: 174 ALKNVEEKE----SLEIIIKESLKFL 195 >gi|89895213|ref|YP_518700.1| hypothetical protein DSY2467 [Desulfitobacterium hafniense Y51] gi|122997255|sp|Q24UN6|RUVA_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89334661|dbj|BAE84256.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 201 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + D +++DVQGV Y + P L G L+ +R+D++ L Sbjct: 1 MIGMLRGKVWEIQADKLILDVQGVGYQLSIPYGLLGK-AHPGHELILYTHVILREDELAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +++ F+L+ SV G+G + A+ +LS + + +I +N ++ ++PGI K Sbjct: 60 YGFSSAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ E A +F A+ L+ LG+ Q++A A Sbjct: 120 AQRLILELKEKFKG------RAIALEGIEGAGSLPQAAFHSEAMETLLALGFSQEEAKKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + ++ + ++ + Q +RLALR+++ Sbjct: 174 LQALPDSAQALSTEEQ-VRLALRSLAA 199 >gi|319892695|ref|YP_004149570.1| Holliday junction DNA helicase RuvA [Staphylococcus pseudintermedius HKU10-03] gi|317162391|gb|ADV05934.1| Holliday junction DNA helicase RuvA [Staphylococcus pseudintermedius HKU10-03] Length = 199 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G + L+ +++++ G+ Y I P + + ++ +R+D Sbjct: 1 MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQTVKVYTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F+ L V G+G + A+ +L+ + E+ +I +N + Q PGI K Sbjct: 60 LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK + V + + +++ A+ AL LGY + + Sbjct: 120 TARQIVLDLKGKVVVTEEVSEGLLDIATEQE------DLAVQEALLALEALGYSKRE-LK 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V ++++ +D + ++ L+ + Sbjct: 173 KVEKAMQQQI-FSDVDEAVKYGLKQL 197 >gi|298373760|ref|ZP_06983749.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274 str. F0058] gi|298274812|gb|EFI16364.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274 str. F0058] Length = 193 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L + +++V + Y + + T S L D ++V +R+D L Sbjct: 1 MIDYIKGKIVELSPAHAVVEVSDIGYHVNISLATYSELNG-KDNAKIYVYEAIREDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +RQ F+LL SV GVGA A +LS I +L +I N+ ++ + GI K Sbjct: 60 FGFFGRQERQLFLLLISVSGVGANTARVILSSIAIDDLQSAIQTGNAAILKSVKGIGSKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + N A A++ALV LG+ Q A A Sbjct: 120 AERIIVDLKDKVSKIEISTVDKPVVDN----------VLADEAVAALVMLGFSQMPAQKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V++ + Q+I+ +L+ + Sbjct: 170 VRKVIEINPQLT-IEQVIKQSLKLL 193 >gi|327394173|dbj|BAK11595.1| Holliday junction DNA helicase RuvA [Pantoea ananatis AJ13355] Length = 175 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 4/176 (2%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P+ L + +F + +R+D LFGF S +R F L V GVG ++A+ + Sbjct: 1 MPMTCFYELPDLNHEAVIFTQFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAI 60 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL-SSVVQQDMSCVNK 148 LS ++A + V ++ + + ++PG+ K A R++ E+K + + + D + Sbjct: 61 LSGMSAQQFVTAVEKEEIAALVKLPGVGKKTAERLVVEMKDRFKGMHGDLFGGDSAFTLT 120 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A++ALV+LGY +A+ + V + + AD +IR ALRA Sbjct: 121 TPGPEPETNDAESEAVAALVSLGYKPQEASRMISKVGRPD---ADCETLIREALRA 173 >gi|229491976|ref|ZP_04385793.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis SK121] gi|229321108|gb|EEN86912.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis SK121] Length = 199 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G LF +R+D + L Sbjct: 1 MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ + + + S + AL LG+ QA A Sbjct: 120 AERMVVELRDKV--------DAVATTAGAASGVVAGSSIRDQIVEALEGLGFPIKQAEQA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SVL + A S +R AL + Sbjct: 172 TDSVLAESPE-ATTSVALRSALSLL 195 >gi|121595991|ref|YP_987887.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42] gi|166229625|sp|A1WC36|RUVA_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120608071|gb|ABM43811.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42] Length = 190 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + + T L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + AL+ LGY +A Sbjct: 121 AER-------------LLLELKGKLGADVGVRAHAANDNQADILQALLALGYNDKEA--- 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + LK S+ I+LAL+++S Sbjct: 165 -AAALKALPADVGVSEGIKLALKSLS 189 >gi|297198358|ref|ZP_06915755.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC 29083] gi|197714415|gb|EDY58449.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC 29083] Length = 201 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTIAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RLGQPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFVDDDERQIFELLQTASGVGPRLAQAMLAVHAPDALRRAVATGDEKALIAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAIGAPVTQGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206 V +V + + Q+++ AL+ ++ Sbjct: 170 VTAVTPQAEASEGTPQVGQLLKAALQTLN 198 >gi|300934559|ref|ZP_07149815.1| Holliday junction DNA helicase RuvA [Corynebacterium resistens DSM 45100] Length = 208 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DYV+++ GV Y + + L + G + +R+D L Sbjct: 1 MIASLRGTVIDKGLDYVVVECSGVGYHCHTTPAIVGTL-ERGTEAFVLTTLVVREDAQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F RQ F+ LQ V GVGARVA+ ++S +T EL ++ ++K + + PG+ ++ Sbjct: 60 YAFTDSDQRQTFLALQKVSGVGARVALAIMSVLTPAELAAAVAEGDAKTLQRAPGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LKGK +LSS V + + S ALV LG+ + +A + Sbjct: 120 AERMVVDLKGKLGALSSEVSTPGAPSPDSPQGLS--DSVREQVEEALVGLGFTEAKAAST 177 Query: 181 VVSVLK--KEKNIADDSQIIRLAL 202 V + ++ + D S ++R AL Sbjct: 178 VSQAVARTEDAGLLDASSLLRAAL 201 >gi|83859806|ref|ZP_00953326.1| Holliday junction DNA helicase motor protein [Oceanicaulis alexandrii HTCC2633] gi|83852165|gb|EAP90019.1| Holliday junction DNA helicase motor protein [Oceanicaulis alexandrii HTCC2633] Length = 216 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + E+ +IDV GV Y++ RTL L + G L +ETH+R+DQ +L Sbjct: 1 MIGKLKGVVDCVGEEEAVIDVNGVGYLVSAGSRTLGRL-EPGKPVALHIETHVREDQFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLSD +R WF+ LQSVQGVGA+ A+ +L I E+ S IL + + G+ K+ Sbjct: 60 FGFLSDSERAWFVRLQSVQGVGAKHALAMLDAIEVGEIESSAILGDPLPFERAKGVGKKL 119 Query: 121 ASRIMTELKGKAISLS----------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 A RI TELK KA L + A +A+SALVNL Sbjct: 120 AQRIATELKDKAPPLGRSLGAGVAELAAALAPAGAETPTAAPAPKDNVMRESAVSALVNL 179 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GY + A A L++ A + +I+ AL+ ++ Sbjct: 180 GYSESDARKAAAEALRQLGEDATEGLVIKSALKELA 215 >gi|260910076|ref|ZP_05916757.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral taxon 472 str. F0295] gi|260635788|gb|EEX53797.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral taxon 472 str. F0295] Length = 205 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG++ L +I+ GV Y + + T S + + D LFV T R D Sbjct: 1 MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYSAI-QGKDKLKLFVHEALVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R+ + LL SV GVGA A +LS ++ +EL I + K++ + GI Sbjct: 60 SYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPSELCNVIAAGDDKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A RI+ +LK K ++S V Q++S V + A+ AL LG+ Sbjct: 120 GAKTAQRIIVDLKDKI--MTSGVAQELS-VPTNANANAMNAAVKDEAVGALTMLGFAPAT 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +LK++ ++ Q+++ AL+ I Sbjct: 177 SAKVVVEILKEQPDLP-VEQVVKAALKMI 204 >gi|258512078|ref|YP_003185512.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478804|gb|ACV59123.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 208 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 113/205 (55%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L YV +DV+ V Y ++ RT + L +GD L+ H+R+D L Sbjct: 1 MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAALN-LGDTAFLYTHHHVREDGWAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G ++A+ V+ E+V +I+ ++++ ++++PGI K+ Sbjct: 60 YGFETIEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDAESLSRLPGIGRKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASR++ EL+ K L+ + + + Q S A +A+SALV LGY +A A Sbjct: 120 ASRLVVELREKLDDLAPAALRAPAPASSPQG------SAAEDAVSALVALGYRPREAEEA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + +++ D I+ AL + Sbjct: 174 VSAVGRGRQSVEDT---IKAALTYL 195 >gi|300781059|ref|ZP_07090913.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium genitalium ATCC 33030] gi|300532766|gb|EFK53827.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium genitalium ATCC 33030] Length = 207 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+ GV Y P TL+ L + G+ + +R+D + L Sbjct: 1 MIDSLNGEVISIGLDHAVIECAGVGYRFLAPPPTLARLVR-GETTRVLTTLVVREDDMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D R F L +V G+G ++A+ LS T EL I ++K I IPG+ K+ Sbjct: 60 YGFTDDDARSMFHRLTAVSGLGPKLAIAALSVFTPGELAAHITSGDAKTIQSIPGVGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A R++ ELK K L Q + + S SFA + ALV LG+ + + Sbjct: 120 ADRMVLELKDKLQGLYPGAAQSEAPEAAGEVPPISGSSFATEQVVEALVGLGFPEK-SAR 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A V + E + A+ S ++R AL + Sbjct: 179 AAVDAVAAENDGAESSVLLRAALNRL 204 >gi|307244215|ref|ZP_07526330.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis DSM 17678] gi|306492365|gb|EFM64403.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis DSM 17678] Length = 203 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 11/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG +E + DYVLI+ + Y + TLS L + GD ++ + +R+D I L Sbjct: 1 MIGYIKGTVEYIGIDYVLIENNEIGYKLNASSNTLSQLNE-GDRVKVYTKMIVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + + F LL SV +G ++ + +LS T ++L I ++K +++ PG+ K Sbjct: 60 CGFYSKEELEMFNLLTSVSKIGTKLGLAILSFATPSQLHLYISTSDTKTLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI-NAISALVNLGYGQDQATT 179 A R++ ELK + LS +S + SMP+ + AI AL+ LGY ++ Sbjct: 120 AERMVLELKDRLGKLS------ISGEDFVGKPTVSMPTTSDGEAIDALIALGYTGQESKV 173 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 AV V + I++ AL Sbjct: 174 AVDFVKQPGMG---VEDIVKKAL 193 >gi|260898721|ref|ZP_05907217.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus Peru-466] gi|308089527|gb|EFO39222.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus Peru-466] Length = 147 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 73/137 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ E+K + + Sbjct: 121 AERLVVEMKDRLKGWGA 137 >gi|261878755|ref|ZP_06005182.1| crossover junction endoribonuclease subunit A [Prevotella bergensis DSM 17361] gi|270334761|gb|EFA45547.1| crossover junction endoribonuclease subunit A [Prevotella bergensis DSM 17361] Length = 206 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI I+G + L +++ G+ Y + + T + + L+V T R D Sbjct: 1 MIEYIQGELTELTPALAVVETGGIGYALSISLNTYDDI-QGKKAVKLYVHEAIQTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R+ + +L +V GVGA A +LS +T EL +I N K+I + GI Sbjct: 60 NYTLYGFASKQERELYRMLITVSGVGANTARTMLSSLTPKELCNAIANGNEKLIKSVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A R++ +L+ K + SS + + + + + A+SAL LG+ Sbjct: 120 GLKTAQRVIVDLRDKIV--SSGIAEVLHAGTPDTKVSAVNTAVKDEAVSALTMLGFSPAP 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 AT V ++L ++ ++ +++ AL+ I Sbjct: 178 ATKTVTAILTEQPDMV-VEMVVKEALKRI 205 >gi|269795058|ref|YP_003314513.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii DSM 10542] gi|269097243|gb|ACZ21679.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii DSM 10542] Length = 206 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + D +++V G+ Y++Y TL+ L ++G ++ +R+D + L Sbjct: 1 MIASLSGTVQTVRLDSAVLNVAGIGYLVYATPATLATL-RVGAEASVATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F Q+V GVG R+A+ +L+ T L ++ + K + ++PGI K Sbjct: 60 YGFSDDDERSVFEASQTVSGVGPRLALAMLAVHTPDGLRRALAGGDVKALTRVPGIGAKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL K Q A + + ALV+LG+ A A Sbjct: 120 AQRLILELGDKL-------GQPTGLDGGSVAPTAGLGDQRDQVVEALVSLGWSAKVAEDA 172 Query: 181 VVSVLKKEK----NIADDSQIIRLALRAI 205 + +VL + +D ++R AL+ + Sbjct: 173 IGTVLAESGATSVTTSDVPVVLRSALKVL 201 >gi|149203738|ref|ZP_01880707.1| Holliday junction DNA helicase motor protein [Roseovarius sp. TM1035] gi|149142855|gb|EDM30897.1| Holliday junction DNA helicase motor protein [Roseovarius sp. TM1035] Length = 220 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 13/218 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I+ D+VLIDV+GV Y++YC RTLS L +G L+ + +R+D ++L Sbjct: 1 MIGRVAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPAVGGMAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I + + + GI K Sbjct: 61 FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIAIGDWNSVTAAKGIGAKT 120 Query: 121 ASRIMTELKGKAI------------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV 168 A R++ ELK KA + + + + + P A+SAL Sbjct: 121 AQRVVNELKDKAPLVMAMGAAPAPMPAAPDTDEVIETASVPTPPVPPSPGAQAEALSALT 180 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGY +A AV V + A +++IR ALR ++ Sbjct: 181 NLGYTPGEAAGAVAQVAGETPE-ATTAELIRAALRRLA 217 >gi|251783476|ref|YP_002997781.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392108|dbj|BAH82567.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323128222|gb|ADX25519.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 197 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + +K + S AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEVPQE-------TSKAKPSTSSNNDQLDEAIEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 172 IRAFFEGTSETA--EQYIKSALKLL 194 >gi|116872962|ref|YP_849743.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463790|sp|A0AIY2|RUVA_LISW6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116741840|emb|CAK20964.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b str. SLCC5334] Length = 201 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGKVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGSEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVFKAPENDIVHGLSPQLEEAVLALEALGYSTKELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ +D I+LALR + Sbjct: 177 IPKLSKENDLTSD--AYIKLALRLM 199 >gi|16803573|ref|NP_465058.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes EGD-e] gi|224499806|ref|ZP_03668155.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes Finland 1988] gi|224501527|ref|ZP_03669834.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL R2-561] gi|254828233|ref|ZP_05232920.1| ruvA [Listeria monocytogenes FSL N3-165] gi|254829708|ref|ZP_05234363.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 10403S] gi|284801923|ref|YP_003413788.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578] gi|284995065|ref|YP_003416833.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923] gi|20455246|sp|Q8Y6Z7|RUVA_LISMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|16410962|emb|CAC99611.1| ruvA [Listeria monocytogenes EGD-e] gi|258600621|gb|EEW13946.1| ruvA [Listeria monocytogenes FSL N3-165] gi|284057485|gb|ADB68426.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578] gi|284060532|gb|ADB71471.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923] Length = 201 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ +D I+LAL+ + Sbjct: 177 IPKLAKEADLTSD--AYIKLALQLM 199 >gi|312139494|ref|YP_004006830.1| holliday junction DNA helicase ruva [Rhodococcus equi 103S] gi|311888833|emb|CBH48145.1| Holliday junction DNA helicase RuvA [Rhodococcus equi 103S] Length = 201 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + GD L +R+D + L Sbjct: 1 MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM +L+ + L +++ N + ++PGI + Sbjct: 60 YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ ++ S + AL LG+ + A A Sbjct: 120 AERMVVELRDKVEAVA------VTGDLPGAGAATSASVVRDQVVEALTGLGFKLEHAEKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V+ + A S ++R AL + Sbjct: 174 TDTVVAADPE-APTSTVLRSALALL 197 >gi|315498698|ref|YP_004087502.1| holliday junction DNA helicase ruva [Asticcacaulis excentricus CB 48] gi|315416710|gb|ADU13351.1| Holliday junction DNA helicase RuvA [Asticcacaulis excentricus CB 48] Length = 205 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 116/205 (56%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + + +D +I+V G+ YI+ C +RTL+ L G L +E+ R+D RL Sbjct: 1 MIGRLRGILLEIEDDEAVIEVMGLGYIVKCGVRTLANLPANGQEAILHIESQTREDGTRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R+ F L +VQGVG + A+ VL +T EL ++ ++ + + G+ K+ Sbjct: 61 YGFLSKDERKTFQQLLTVQGVGPKAALSVLDILTPHELAIAVAHEDKTKVNKANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGKA+++ V A + S +++AL+ LG + Q+ A Sbjct: 121 AQRIVIELKGKALAIGEAFVPVAPGVVLASASSAASRSG--ESVAALMGLGIPEAQSRQA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + +K+ A+ + +IR +L+ I Sbjct: 179 VEAAVKELGPEAELAAVIRASLKLI 203 >gi|323464267|gb|ADX76420.1| Holliday junction DNA helicase RuvA [Staphylococcus pseudintermedius ED99] Length = 199 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G + L+ +++++ G+ Y I P + + ++ +R+D Sbjct: 1 MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQMVKVYTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F+ L V G+G + A+ +L+ + E+ +I +N + Q PGI K Sbjct: 60 LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK + V + + +++ A+ AL LGY + + Sbjct: 120 TARQIVLDLKGKVVVTEEVSEGLLDIATEQE------DLAVQEALLALEALGYSKRE-LK 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V ++++ +D + ++ L+ + Sbjct: 173 KVEKAMQQQI-FSDVDEAVKYGLKQL 197 >gi|332883220|gb|EGK03503.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas mossii DSM 22836] Length = 193 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I L ++ G+ Y I + T + + L++ +R+D +L Sbjct: 1 MIDYIKGDIAELTPTSATLETHGIGYFINISLNTYTSI-SGQKSAKLYIYEAIREDAYQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+GA +LS +T EL I NS ++ + GI K Sbjct: 60 YGFSEKQERELFILLISVSGIGASTGRMILSSMTVQELTNVIASGNSDILKTVKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K +S + +M + AI+ALV LG+ Q + A Sbjct: 120 AQRVIVDLKDKI-KVSGIESVEMFAKTSQAG---------EEAIAALVMLGFPQQASQKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK + + + Q+I+ AL+ + Sbjct: 170 VSKILKDKPD-STVEQVIKTALKML 193 >gi|91789933|ref|YP_550885.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666] gi|123164397|sp|Q124Q5|RUVA_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91699158|gb|ABE45987.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666] Length = 190 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + VL+D GV Y + P+ T L +G+ +L +R+D L Sbjct: 1 MIGRISGQLAEKNPPEVLVDCNGVGYEVLVPMSTFYNLPGLGEKVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVG R A+ VLS ++ EL +++ Q + I ++PGI K Sbjct: 61 YGFGSATERAAFRQLIKISGVGPRTALSVLSGMSVEELAQAVTHQEAGRIIKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + ALV LGY A A Sbjct: 121 AER-------------LLLELKGKLGADIGVQVSVSSDSQSDILQALVALGYSDRDAALA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ K S I+LAL+A++ Sbjct: 168 LKALPKDIG----VSDGIKLALKALA 189 >gi|148555055|ref|YP_001262637.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1] gi|166200267|sp|A5V883|RUVA_SPHWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148500245|gb|ABQ68499.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1] Length = 199 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 72/204 (35%), Positives = 115/204 (56%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + D+ ++DV GV Y+++C RTLS +G+ G LF E +R+D I L Sbjct: 1 MIARLRGVLAETSADHAVLDVGGVGYLVWCSARTLSAIGETGGDVLLFTEMQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F LL SVQGVG RVA+ +LS + A EL ++ + +IA+ G+ K+ Sbjct: 61 YGFGSAGERDSFRLLTSVQGVGGRVALAILSVLDAGELSRAVAGGDKAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ A + + +A+SAL NLG+ +A+ A Sbjct: 121 AMRIVNELKDKM--------GGVALGPGLGAAPAAKGGVSTDALSALANLGFRPAEASAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + +++ + A ++RLALR Sbjct: 173 VGAAIEELGDGATLDAVVRLALRK 196 >gi|262202231|ref|YP_003273439.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM 43247] gi|262085578|gb|ACY21546.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM 43247] Length = 197 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +ID GV Y + TLS L + G+ TL +R+D + L Sbjct: 1 MIASVRGPVLEVALDHAVIDCGGVGYRVLATPVTLSRL-RRGEESTLLTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM L+ + L ++ ++K + +PGI ++ Sbjct: 60 YGFTEPDARALFALLQTVTGVGPRLAMATLAVLEPEALRRALAESDTKALTSVPGIGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + ALV LG+ A A Sbjct: 120 AERLVVELRDKVDR----------PTGESAVGVVAPGGVREQVADALVGLGFTAGPAEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL + AD S +R +L + Sbjct: 170 VAAVLADHPD-ADASTALRQSLSLL 193 >gi|269956459|ref|YP_003326248.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica DSM 15894] gi|269305140|gb|ACZ30690.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica DSM 15894] Length = 207 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + D +IDV GV Y+++ TL+ L + G+ LF +R++ + L Sbjct: 1 MIASLTGVVEHVSLDRAVIDVGGVGYLVHATPGTLAGL-RTGERARLFTTMVVREESMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F D +R F QSV GVG R+A+ VL+ T + ++ Q+ K + ++PGI K+ Sbjct: 60 YAFTDDDERALFETAQSVSGVGPRIALAVLAVHTPDAVRRAVHTQDVKALTRVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + + + ALV LGY A A Sbjct: 120 AQRILLELGGKLGAPTGDGAAGSGATAGTGGDQRGK------VVEALVGLGYPAKTADDA 173 Query: 181 VVSVLKKEKN----IADDSQIIRLALRAI 205 V VL AD + +R LR + Sbjct: 174 VARVLADGGTETVADADVAATLRATLRMM 202 >gi|73748284|ref|YP_307523.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1] gi|289432333|ref|YP_003462206.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT] gi|90134867|sp|Q3ZZK6|RUVA_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|73660000|emb|CAI82607.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1] gi|288946053|gb|ADC73750.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT] Length = 194 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 14/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G +G +F H+R+D + L Sbjct: 1 MISSLNGILEASGKDWAVINVSGVGFRCYMPATSPALIGGLGQRVRVFTHLHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 +SRI+ ELK K N E + + + ++ L LGY +A A Sbjct: 121 SSRIILELKDKIAK------------NWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + S+ + + I+LAL Sbjct: 169 ISSL--GDNGDLPLEERIKLAL 188 >gi|256832601|ref|YP_003161328.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM 20603] gi|256686132|gb|ACV09025.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM 20603] Length = 205 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 13/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G ++ + D ++ V GV Y++Y TL+ L + G TL+ +R+D + L Sbjct: 1 MIAQLTGIVQKIRLDSAILTVHGVGYLVYATPATLATL-REGQDATLWTSLVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F +Q+V GVG R+A+ +L+ A L +++ + K + ++PGI K+ Sbjct: 60 FGFTDFDERDVFETVQTVSGVGPRLALAMLAIHPAQALRTAVVHADIKALTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + S Q + + A + I AL++LG+ QA A Sbjct: 120 AQRIVLELSNRMTPPQSETTQTPTTPTEHDA--------SEQVIDALMSLGWNTKQAENA 171 Query: 181 VVSVLKKEK----NIADDSQIIRLALRAI 205 V V A +R AL+ + Sbjct: 172 VDQVRADTGQPIITPAQVPATLRAALKIL 200 >gi|147669064|ref|YP_001213882.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. BAV1] gi|146270012|gb|ABQ17004.1| Holliday junction DNA helicase subunit RuvA [Dehalococcoides sp. BAV1] Length = 194 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 14/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + + P + + +G +G +F H+R+D + L Sbjct: 1 MISSLNGILEASGKDWAVINVSGVGFRCHMPATSSALIGGLGQRVRVFTHLHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 +SRI+ ELK K N E + + + ++ L LGY +A A Sbjct: 121 SSRIILELKDKIAK------------NWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + S+ + + I+LAL Sbjct: 169 ISSL--GDNGDLPLEERIKLAL 188 >gi|7766817|pdb|1D8L|A Chain A, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region Lacking Domain Iii gi|7766818|pdb|1D8L|B Chain B, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region Lacking Domain Iii Length = 149 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 75/146 (51%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV 146 A R++ E+K + L + + + Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADL 146 >gi|307294738|ref|ZP_07574580.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum L-1] gi|306879212|gb|EFN10430.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum L-1] Length = 202 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 74/204 (36%), Positives = 112/204 (54%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y++ RTL+ LG +G+ T+ E + +D IRL Sbjct: 1 MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSEDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL SVQGVG+RVA+ +LS + EL S+ + +IA+ G+ K+ Sbjct: 61 VGFARAEERDWFRLLTSVQGVGSRVALAILSALEPAELHRSVATGDKAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K ++ + + S + +AISAL NLG+ +A++A Sbjct: 121 AQRIANELKDKIGAVPT-----PAGGVGGGFAAVSGGGHSADAISALQNLGFKPAEASSA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A ++RLALR Sbjct: 176 VAAAEGELGEDASLDALVRLALRK 199 >gi|229192632|ref|ZP_04319593.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 10876] gi|228590939|gb|EEK48797.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 10876] Length = 197 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDENKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -ALTTDQYIKKALSLL 192 >gi|255038209|ref|YP_003088830.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM 18053] gi|254950965|gb|ACT95665.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM 18053] Length = 196 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + Y +IDV GV Y + ++T + L IG C L ++R+D L Sbjct: 1 MIAYVNGIVTYKDPAYAIIDVNGVGYEVRISLQTYTSLPDIGARCKLVTFLNIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F+ L S+ G+G A+ +LS ++++E+ + II ++ ++I I GI K Sbjct: 61 YGFWGNDEKKLFLDLTSISGIGPSTALVMLSSLSSSEIRQGIIDEDLRLIQSIKGIGSKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V S S + A++ALV LG + A + Sbjct: 121 AQRVILELRDKIRKEELVSTGPRSVE-------ASSNTLRSEALAALVTLGIPKATAEKS 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + +++K+E +I+LALR Sbjct: 174 LDAIIKREGPSISVENLIKLALR 196 >gi|313673192|ref|YP_004051303.1| holliday junction DNA helicase ruva [Calditerrivibrio nitroreducens DSM 19672] gi|312939948|gb|ADR19140.1| Holliday junction DNA helicase RuvA [Calditerrivibrio nitroreducens DSM 19672] Length = 192 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 106/206 (51%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K++G + +Y+++DV G+ + I + + L + + T +R+D I + Sbjct: 1 MIAKLRGKLHEKKPNYIILDVNGIFFEISISLNCFTSLPDLNSELIISTYTIVREDGISI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+D +++ F+LL SV VG ++A+ +LS +L +I ++ +IA PG+ K Sbjct: 61 YGFLNDDEKRLFLLLNSVSKVGPKLALSILSTCEIVKLKSAIKNRDINLIATAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K V+ D ++ + ISALVNLGY + A +A Sbjct: 121 AERIILELRDKIEEFEVVMDADTGGLD-------------DDIISALVNLGYKKVDALSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + K + +R AL+ ++ Sbjct: 168 LKRLDDRYKTF---EERLREALKLLN 190 >gi|304317016|ref|YP_003852161.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778518|gb|ADL69077.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 188 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I DYV+++ G+ + I P TL L D L+ H+++D + Sbjct: 1 MIDYIKGAIVERGIDYVVVETLGIGFKIIVPTSTLRELPNTNDIIKLYTYLHVKEDGFQF 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F L +V GVG + A+ +LS I+ +I +SK+I + PGI K Sbjct: 61 YGFLTINEMEIFKKLIAVNGVGPKAAVSILSTISIDNFYNAIKNGDSKIIEKSPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K A + + + ++AL++LGY + ++ +A Sbjct: 121 AQRIILELKDKLFI--------------NNAEAVKIDDASEDVLNALLSLGYTRQESISA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + +R AL+ + Sbjct: 167 LYGI-----DCTNTENALREALKKL 186 >gi|325963419|ref|YP_004241325.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter phenanthrenivorans Sphe3] gi|323469506|gb|ADX73191.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter phenanthrenivorans Sphe3] Length = 214 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +ID+ G + +TLS L + G+ LF +R+D + L Sbjct: 1 MISFLRGTVAHVGLSTAVIDLNGAGMSVNATPQTLSGL-RTGEEGQLFTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R+ F +L SV GVG R+A+ VL+ + + +SK ++PGI K+ Sbjct: 60 FGFASDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDSKTFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + A + S+ ++A+ +LG+ + A+ + Sbjct: 120 AGRIVLELAGKLVP--------QGTAGTAAAPTAAEASWKPQVVAAMTSLGWSEKDASAS 171 Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205 + L E ++ + +I+R LR + Sbjct: 172 IDKALADEPEVSFRGNVPEILRTTLRWL 199 >gi|325672616|ref|ZP_08152312.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus equi ATCC 33707] gi|325556493|gb|EGD26159.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus equi ATCC 33707] Length = 201 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + GD L +R+D + L Sbjct: 1 MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM +L+ + L +++ N + ++PGI + Sbjct: 60 YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ ++ S + AL LG+ + A A Sbjct: 120 AERMVVELRDKVEAVA------VTGDLPGAGAATSASIVRDQVVEALTGLGFKLEHAEKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V+ + A S ++R AL + Sbjct: 174 TDTVVAADPE-APTSTVLRSALALL 197 >gi|313890377|ref|ZP_07824008.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus SPIN 20026] gi|313121220|gb|EFR44328.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus SPIN 20026] Length = 197 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++V G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGQLTKITAKYIVVEVNGLGYIIYV-ANPYSFTDSVNQNVTVYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + QQ + AI AL+ LGY + Sbjct: 120 AQQMILDLAGKFVDNPEPGQQQSQAKRNSNHQL-------DEAIEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + A Q I+ AL+ + Sbjct: 172 IRAFFEGTEETA--EQYIKSALKML 194 >gi|34580551|ref|ZP_00142031.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246] gi|28261936|gb|EAA25440.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246] Length = 203 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 124/203 (61%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLALEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS + + + P + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKNITPVASNEVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 176 VQGIITQNPEISID-ELIKTALK 197 >gi|167751984|ref|ZP_02424111.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216] gi|167660225|gb|EDS04355.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216] Length = 194 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I L + ++DV GV Y + ++T S + + D LFV +R+D L Sbjct: 1 MYEYLSGTISELAPTHAVLDVGGVGYFLQISLQTYSEI-EHSDRVKLFVHYVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L SV GVG A +LS + EL I +N+ ++ + G+ +K Sbjct: 60 YGFASKAERELFRHLISVSGVGGNTARMILSTYSPRELQGIIATENAVLLKNVKGLGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL GK L + + A++ALV LG+G+ A Sbjct: 120 AQKIIVELSGKMAGLG---------LTGDTVTAPVAGGDYEEALAALVMLGFGKAAADKV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +E A ++R++L+ + Sbjct: 171 V-KIVARENPGASVEDLVRMSLKRL 194 >gi|110597586|ref|ZP_01385871.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM 13031] gi|110340706|gb|EAT59183.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM 13031] Length = 200 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + L + +++V G+ Y T L + G L+ +R+D +L Sbjct: 1 MFAYFRGRLVSLLPEEAVVEVSGIAYRFLISASTSRQLPETGSEVLLYSHLSVREDAHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +RQ F LL GVG ++A+ VLS + E+ ++I+ + + I G+ K Sbjct: 61 YGFITEAERQMFRLLILTSGVGPKLALAVLSGLQVAEVYDAILANTPERLYGITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + LS + A + S +AI+ALV LG+ + A Sbjct: 121 AARIILELRDKILKLSP-----AGTIAAPSAQLSSR--MRDDAINALVTLGFSRVTVQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V S+L+K + ++I+ AL Sbjct: 174 VDSILEKN-SALSVEEVIKSAL 194 >gi|297559814|ref|YP_003678788.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844262|gb|ADH66282.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 206 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +IDV GV + C LS L +G+ T+ +R++ + L Sbjct: 1 MIAFLTGRVAARGAGTAVIDVGGVGMTVQCTPSALSRL-HVGETGTVATSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D ++ F LQ+ GVG R+A+ +LS + + L ++ +++ + ++PGI K Sbjct: 60 FGFADDDEKHLFEQLQTASGVGPRLALAMLSVHSPSSLRHAVSTEDTTALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178 A RI+ EL+GK L + V D + E A S P ++ +S LVNLG+ A Sbjct: 120 AQRIVLELRGK---LDAPVLTDGTLPGSEAAGTGSEPNGAWRGQVVSGLVNLGWSAKDAE 176 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A +V + ++ D + ++R ALR +S Sbjct: 177 AAASAVAAEAEHTDDVAVLLRSALRRLS 204 >gi|47097030|ref|ZP_00234603.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 1/2a F6854] gi|254898301|ref|ZP_05258225.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes J0161] gi|254912207|ref|ZP_05262219.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818] gi|254936535|ref|ZP_05268232.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900] gi|47014612|gb|EAL05572.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 1/2a F6854] gi|258609129|gb|EEW21737.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900] gi|293590180|gb|EFF98514.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818] Length = 201 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGIEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ +D I+LAL+ + Sbjct: 177 IPKLAKEADLTSD--AYIKLALQLM 199 >gi|290769835|gb|ADD61608.1| putative protein [uncultured organism] gi|291542961|emb|CBL16071.1| Holliday junction DNA helicase, RuvA subunit [Ruminococcus bromii L2-63] Length = 200 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + + + +++ GV Y+ + TL + K+ TL+ ++R+D + L Sbjct: 1 MLYSVRGKLIAIESNAAVVECGGVGYMCQTTMNTLKAV-KLNTEVTLYTYLNVREDAVDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F L SV GVG + + VLS ++ ++ +I + K I + GI KI Sbjct: 60 FGFATKAELETFKNLISVSGVGPKAGLAVLSELSPEQVAMAIASDDLKTITRAQGIGKKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K L+ ++D S Q + AI AL LGY Sbjct: 120 AQRIVLELKDK---LAKAAKEDSSFAQAAQNSVNVSTGNVPKAIEALGVLGYSPSD---- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL + Q+I L L+ + Sbjct: 173 VSPVLATLDSALPVEQLISLTLKQM 197 >gi|126737218|ref|ZP_01752953.1| Holliday junction DNA helicase motor protein [Roseobacter sp. SK209-2-6] gi|126721803|gb|EBA18506.1| Holliday junction DNA helicase motor protein [Roseobacter sp. SK209-2-6] Length = 228 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 21/226 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +D++LIDV GV YI+YC RTL+ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRTQDHILIDVHGVGYIVYCSERTLAALPGTGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFTSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK------EQAHICSMPSFAINA----------- 163 A RI+ +LK KA ++ ++ ++ E+A + S A Sbjct: 121 AQRIVLDLKDKAPAVMAMGGSVADAMDGPGLEVIEEAEPAATKSARKTAPKKPSGAAAAS 180 Query: 164 ---ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A AV + AD++++IR ALR ++ Sbjct: 181 AGALSALGNLGYGPSDAAAAVAEAAATYPD-ADEAELIRAALRLLA 225 >gi|228923173|ref|ZP_04086464.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941589|ref|ZP_04104137.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960694|ref|ZP_04122338.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967497|ref|ZP_04128525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar sotto str. T04001] gi|228974518|ref|ZP_04135085.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981112|ref|ZP_04141413.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis Bt407] gi|228987674|ref|ZP_04147786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229111893|ref|ZP_04241439.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-15] gi|229129701|ref|ZP_04258669.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-Cer4] gi|229146992|ref|ZP_04275354.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST24] gi|229152624|ref|ZP_04280813.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1550] gi|229158036|ref|ZP_04286107.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 4342] gi|229175095|ref|ZP_04302612.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus MM3] gi|228608391|gb|EEK65696.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus MM3] gi|228625489|gb|EEK82245.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 4342] gi|228630885|gb|EEK87525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1550] gi|228636489|gb|EEK92957.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST24] gi|228653818|gb|EEL09688.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-Cer4] gi|228671649|gb|EEL26947.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-15] gi|228772059|gb|EEM20513.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778653|gb|EEM26919.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis Bt407] gi|228785235|gb|EEM33247.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792212|gb|EEM39786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar sotto str. T04001] gi|228799000|gb|EEM45973.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818096|gb|EEM64173.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836552|gb|EEM81902.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 197 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|85709397|ref|ZP_01040462.1| Holliday junction DNA helicase motor protein [Erythrobacter sp. NAP1] gi|85688107|gb|EAQ28111.1| Holliday junction DNA helicase motor protein [Erythrobacter sp. NAP1] Length = 228 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ + ED+ ++DVQGV Y+++C RTLS LG+ G+ CT+ + + ++ +RL Sbjct: 27 MIAKLSGRLDEIGEDWAIVDVQGVGYLVHCSARTLSALGEKGEACTVHTDLQVSENDMRL 86 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG++V + +LS ++ EL ++ ++ +A+ G+ K+ Sbjct: 87 LGFAESAERDWFRLLTQVQGVGSKVGLAILSALSTGELRDACAAGDAASVARANGVGPKL 146 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +L + A S + +SAL NLG+ A A Sbjct: 147 AGRIVNELKDKVGALPGGGMAGVPMGAAAPAGSASADA-----VSALENLGFKPAIAAQA 201 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V + A + +IR+AL+ + Sbjct: 202 VARATAELGEDAPEGDLIRVALKKAAS 228 >gi|126700422|ref|YP_001089319.1| Holliday junction DNA helicase RuvA [Clostridium difficile 630] Length = 203 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 4 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS + +L I+ ++ +++ PG+ K Sbjct: 63 CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + ++ ALV LGY ++ A Sbjct: 123 AERIVLELKDKVDKNNIEFEPTL-------LSQKPTLISQDESVDALVALGYTLSESKEA 175 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K N II+ AL Sbjct: 176 VQKCKKDGMN---TEAIIKKAL 194 >gi|318041282|ref|ZP_07973238.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0101] Length = 220 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 105/215 (48%), Gaps = 9/215 (4%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + ++ +L+ GV Y ++ P R LG+ G +L + +R+D Sbjct: 1 MIGWLQGQLADRWQQASRCGLLLVCGGVGYEVHLPRRQWERLGETGTELSLHIHQVIRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R F L +V GVG ++A+G+L +++ ELV +I+ + +++ Q PG+ Sbjct: 61 AWTLYGFASRAERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRLLTQAPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVN---KEQAHICSMPSFAINAIS-ALVNLGY 172 + A R+ EL+ + V + ++PS + ++ L LGY Sbjct: 121 GKRTAERLAVELRTRLQERYGSVANPEDTADLALPASGSAEALPSAVRDEVNLTLTALGY 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQ-IIRLALRAIS 206 + A+ +V E+++ + +R LR +S Sbjct: 181 EALEINRALRAVATTEEDLGQGADAWLRECLRWLS 215 >gi|157825657|ref|YP_001493377.1| Holliday junction DNA helicase RuvA [Rickettsia akari str. Hartford] gi|166200253|sp|A8GN94|RUVA_RICAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157799615|gb|ABV74869.1| Holliday junction DNA helicase motor protein [Rickettsia akari str. Hartford] Length = 203 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 73/203 (35%), Positives = 123/203 (60%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DY++IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKIDAQGDDYIIIDVNGVGYLVYASGKTLGKLSE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T T++ +I ++ + I G+ K+ Sbjct: 60 YGFLTIEEKNFFNLLQSVNGIGTRMALSILSNLTPTDIQIAINNEDKDIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +S+ + +N + I ALVNLG+ + +A + Sbjct: 120 AERIVLELKGKVAKIST----GAAIINDSLNIKNITSVASNEVIKALVNLGFSRFEAQNS 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 176 VQGIVIQNPEISID-ELIKTALK 197 >gi|307326761|ref|ZP_07605953.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu 4113] gi|306887524|gb|EFN18518.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 15/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D +I+V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAAVAPDTAVIEVGGIGMALQCTPATLAGL-RVGQQARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDVLRLAVSTGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + A + P ++ +ALV LGY +A A Sbjct: 120 AQRLLLELKDRL--------GEPLGSAVPSARSAAAPGWSDQLHTALVGLGYATREADEA 171 Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAIS 206 V +V + + + ++R AL+ ++ Sbjct: 172 VAAVTPQAEEAVAAGGKPQVALLLRAALQTLN 203 >gi|255325096|ref|ZP_05366202.1| holliday junction DNA helicase RuvA [Corynebacterium tuberculostearicum SK141] gi|255297661|gb|EET76972.1| holliday junction DNA helicase RuvA [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +ID GV Y +TL L + G+ T+ +++D + L Sbjct: 1 MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGAEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + V E A + + + ALV LG+ A Sbjct: 120 AQRLALELKDKVAGFAPSEPAAAGSV--ETAIAPAGGAVVESVTEALVGLGFTDKGARPV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S + ++ D S ++R AL + Sbjct: 178 VESAYAENPDV-DTSSLLRAALAQL 201 >gi|255101977|ref|ZP_05330954.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-63q42] gi|255307845|ref|ZP_05352016.1| Holliday junction DNA helicase RuvA [Clostridium difficile ATCC 43255] gi|328887746|emb|CAJ69694.2| Holliday junction ATP-dependent DNA helicase RuvA [Clostridium difficile] Length = 200 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 1 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS + +L I+ ++ +++ PG+ K Sbjct: 60 CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + ++ ALV LGY ++ A Sbjct: 120 AERIVLELKDKVDKNNIEFEPTL-------LSQKPTLISQDESVDALVALGYTLSESKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K N II+ AL Sbjct: 173 VQKCKKDGMN---TEAIIKKAL 191 >gi|229081685|ref|ZP_04214180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-2] gi|228701689|gb|EEL54180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-2] Length = 197 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -ALTTDQYIKKALSLL 192 >gi|119961641|ref|YP_948037.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1] gi|119948500|gb|ABM07411.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1] Length = 231 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 12/207 (5%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + + +ID+ G +Y +TLS L K G LF +R+D + LF Sbjct: 19 ISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSHL-KTGSEAKLFTSMIVREDSLTLF 77 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF D +R+ F +L SV GVG R+A+ VL+ + + +SK ++PGI K+A Sbjct: 78 GFADDDEREVFDVLLSVSGVGPRLALAVLAVHEPEAIRVAAHTGDSKTFTKVPGIGPKVA 137 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI+ EL GK + + + + + ++A+ +LG+ + A ++ Sbjct: 138 GRIVLELAGKLVPHGTSTGTAPAAAPNAE--------WKPQVVAAMTSLGWSEKDANGSI 189 Query: 182 VSVLKKEKNIAD---DSQIIRLALRAI 205 + + D +QI+R LR + Sbjct: 190 DKAMADSPELVDAGNVAQILRATLRWL 216 >gi|222097866|ref|YP_002531923.1| holliday junction DNA helicase ruva [Bacillus cereus Q1] gi|228917058|ref|ZP_04080617.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929466|ref|ZP_04092487.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948135|ref|ZP_04110419.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093493|ref|ZP_04224596.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-42] gi|229123962|ref|ZP_04253154.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 95/8201] gi|229163369|ref|ZP_04291321.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus R309803] gi|229186660|ref|ZP_04313821.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BGSC 6E1] gi|229198549|ref|ZP_04325252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1293] gi|221241924|gb|ACM14634.1| holliday junction DNA helicase [Bacillus cereus Q1] gi|228584934|gb|EEK43049.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1293] gi|228596919|gb|EEK54578.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BGSC 6E1] gi|228620150|gb|EEK77024.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus R309803] gi|228659264|gb|EEL14912.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 95/8201] gi|228689964|gb|EEL43768.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-42] gi|228811493|gb|EEM57830.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830254|gb|EEM75870.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842586|gb|EEM87675.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 197 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|119356229|ref|YP_910873.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides DSM 266] gi|166230538|sp|A1BDH2|RUVA_CHLPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119353578|gb|ABL64449.1| Holliday junction DNA helicase subunit RuvA [Chlorobium phaeobacteroides DSM 266] Length = 200 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG++ + +IDV GV Y + T L G L+ +R+D ++L Sbjct: 1 MFAYFKGSLVTALPEEAVIDVSGVAYRMLISATTFRQLPDEGSQVLLYAHLSVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LL GVG ++A+ VLS + E+ E+I+ + + + G+ K Sbjct: 61 YGFFKEEERQLFRLLLLTSGVGPKLALAVLSGLQVPEVHEAIMANEPERLYGVSGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + L V +A+ ALV LG+ + A A Sbjct: 121 AARIILELRDKILKLPLVTPAAGKAAMPSH-------HVKDDAVHALVTLGFSRLLAQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V ++L+++ ++I+ AL Sbjct: 174 VSALLEEKPEQ-SVEEVIKYAL 194 >gi|149185526|ref|ZP_01863842.1| probable holliday junction DNA helicase protein [Erythrobacter sp. SD-21] gi|148830746|gb|EDL49181.1| probable holliday junction DNA helicase protein [Erythrobacter sp. SD-21] Length = 201 Score = 207 bits (528), Expect = 6e-52, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 114/204 (55%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y+++C +TLS LG+ G+ CT++ + + ++ +RL Sbjct: 1 MIAKLKGLLDETGADWAVIDVSGVGYLVHCSTKTLSKLGEKGEACTVYTDLQVSENDMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG++VA+ +LS ++ E+ ++ ++ +A+ G+ K+ Sbjct: 61 LGFAEAAERDWFRLLTQVQGVGSKVALAILSALSTGEVQQACSNGDAATVARAQGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +L + + +A+SAL NLG+ A A Sbjct: 121 AGRIVNELKDKAGALPGGGVGGGTAPATPAGGASA------DAVSALENLGFKPAVAARA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A + +IR+AL+ Sbjct: 175 VAAAQGELGEGASEGDLIRVALKR 198 >gi|262341131|ref|YP_003283986.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272468|gb|ACY40376.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 196 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + + Y++ID GV Y I+ + T S L + G + ++ +Q Sbjct: 1 MITHLRGKLIEKNQSYLIIDCHGVGYHIHISLYTHSSLLEEEGKDICIHTYLFIKDNQHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++R+ F L SV G+G A+ +LS +T E+ +SI ++ K ++ GI K Sbjct: 61 LYGFFDKIERKIFSYLISVNGIGPSSAIMLLSSLTPYEIEKSISKEDIKAFDKVKGIGTK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K K+ + + S A+SAL LG+ ++ Sbjct: 121 TAQRIIIELKDKFTK---------EIFYKKVKNENTPYSIKKEALSALSVLGFSTKESKK 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + +L + +I+ +L+ + Sbjct: 172 ILDDILNEHPEF-SVENLIKESLKKL 196 >gi|255656790|ref|ZP_05402199.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-23m63] gi|296452380|ref|ZP_06894081.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP08] gi|296877729|ref|ZP_06901756.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP07] gi|296258710|gb|EFH05604.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP08] gi|296431262|gb|EFH17082.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP07] Length = 200 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 1 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS + +L I+ ++ +++ PG+ K Sbjct: 60 CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + ++ ALV LGY ++ A Sbjct: 120 AERIVLELKDKVDKNNIEFEPTL-------LSQKPTLISQDESVDALVALGYTLAESKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K N II+ AL Sbjct: 173 VQKCKKDGMN---TEAIIKKAL 191 >gi|213163229|ref|ZP_03348939.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 174 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 3/175 (1%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P+ L + G +F +R+D L+GF + +R F L GVG ++A+ + Sbjct: 1 MPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAI 60 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 LS ++A + V ++ + + ++PGI K A R++ E+K + L + + Sbjct: 61 LSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLT 120 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 + A++ALV LGY +A+ V + + + A +IR ALRA Sbjct: 121 SPASPTSEDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSETLIRDALRA 172 >gi|89053456|ref|YP_508907.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1] gi|123094354|sp|Q28TT0|RUVA_JANSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|88863005|gb|ABD53882.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1] Length = 223 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 20/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+ LIDV GV Y+++C RTL+ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYKGSDHALIDVGGVGYVVHCSDRTLAALPARGEVVALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS +++W LL SVQGVGA+ +M +L + +I L ++ I PG+ K+ Sbjct: 61 FGFLSPYEKEWHRLLTSVQGVGAKASMAILGTLGVEGAARAITLGDATAIKAAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-----------------SMPSFAINA 163 A R++ ELK KA ++ ++ ++ + + A Sbjct: 121 AQRVVMELKDKAPAVMAMGGTLDDAMDDVVDDMPGESAAPAPAPQPRAPKRPASNAQAEA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A +V + ++ ++ ++IR ALR ++ Sbjct: 181 LSALQNLGYGPSDAA---QAVAQAAESASNTPELIRAALRLLA 220 >gi|153003861|ref|YP_001378186.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5] gi|166229629|sp|A7H906|RUVA_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152027434|gb|ABS25202.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5] Length = 197 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D+V++DV GV Y+++ +L+ L G TL + T++RQD I L Sbjct: 1 MIARLAGKVAEKGADHVVLDVGGVGYLVHLSAVSLAGLPPQGGDGTLRIFTNVRQDAIEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F L V+GVG R A +LS I A EL +++ + + ++PGI K Sbjct: 61 YGFASEDEEAVFRALIDVKGVGPRAAQNILSGIDARELAQAVAGSDVARLTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L+ A ALVNLGY QA A Sbjct: 121 AERLVVELKEKLALLARAAG---------PARAKPGAGVVEQLRQALVNLGYKPPQADAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 L+ E +++R AL+ + Sbjct: 172 -ADALRDEAEGKKLDELLREALKRL 195 >gi|41407135|ref|NP_959971.1| Holliday junction DNA helicase motor protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465009|ref|YP_882656.1| Holliday junction DNA helicase RuvA [Mycobacterium avium 104] gi|81414560|sp|Q741Q1|RUVA_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230566|sp|A0QIB8|RUVA_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|41395486|gb|AAS03354.1| RuvA [Mycobacterium avium subsp. paratuberculosis K-10] gi|118166296|gb|ABK67193.1| holliday junction DNA helicase RuvA [Mycobacterium avium 104] Length = 199 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFTDAETRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGDVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + N + ALV LG+ QA A Sbjct: 120 AERMVLELRDKIGAAGAAGAPAGAARNGHAVRGP--------VVEALVGLGFAAKQAEEA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL E A S +R AL + Sbjct: 172 TDKVLAAEPE-AGTSGALRAALSLL 195 >gi|319442165|ref|ZP_07991321.1| Holliday junction DNA helicase RuvA [Corynebacterium variabile DSM 44702] Length = 214 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 7/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+V+I+ GV Y+ RTL+ L + G+ + +R+D L Sbjct: 1 MIASLRGAVVDKGLDHVVIECAGVGYLCQATARTLADLPR-GEEVFVLTTMVVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F R+ F L+QSV GVGAR+AM +LS +T E+ ++ + K + + PG+ ++ Sbjct: 60 YAFPDVASRELFALVQSVSGVGARMAMALLSVLTPAEIAAAVAEGDVKTLQRAPGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R+ +LKGK + + V+ + + ALV LG+ + A Sbjct: 120 ADRMSVDLKGKLDAYAVAQPSGAPGDAVDLTSGDAAVDDAVTAQVVEALVGLGFPEASAA 179 Query: 179 TAVVSVLKK----EKNIADDSQIIRLALRAI 205 V S++ + + + D S ++R AL + Sbjct: 180 DTVTSLVAETGGGDGSSPDASVLLRSALSRL 210 >gi|313159381|gb|EFR58745.1| Holliday junction DNA helicase RuvA [Alistipes sp. HGB5] Length = 194 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y +ID GV Y ++ + T S + + L+V +R+D L Sbjct: 1 MYEYISGPVAEVAPAYAVIDAGGVGYYLHISLETFSAIEHT-ETARLYVHYVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L SV GVG A +LS + EL I N+ ++ + G+ +K Sbjct: 60 YGFATKTERELFRHLISVSGVGGNTARMILSTYSPRELQGIITSGNAVLLKNVKGLGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL GK L + N E+ A++ALV LG+ + A A Sbjct: 120 AQKIIVELSGKLTGLGDADAALPAAGNGEKL---------EEALAALVMLGFAKTAAEKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +L++ A ++R+ L+++ Sbjct: 171 LRGILRENPG-ASVEDLVRMGLKSL 194 >gi|226366281|ref|YP_002784064.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4] gi|254767383|sp|C1B4D0|RUVA_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226244771|dbj|BAH55119.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4] Length = 200 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G L +R+D + L Sbjct: 1 MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GTEARLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPEALRSALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ S S + ALV LG+ QA A Sbjct: 120 AERMVVELRDKVDAVG-------STSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SVL + S + R AL + Sbjct: 173 TDSVLAEAPESTTSSAL-RSALSLL 196 >gi|222109711|ref|YP_002551975.1| holliday junction DNA helicase ruva [Acidovorax ebreus TPSY] gi|254766958|sp|B9MCH5|RUVA_DIAST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221729155|gb|ACM31975.1| Holliday junction DNA helicase RuvA [Acidovorax ebreus TPSY] Length = 190 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + + T L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVLVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + AL+ LGY +A Sbjct: 121 AER-------------LLLELKGKLGADVGVRAHAANDNQADILQALLALGYNDKEA--- 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + LK S+ I+LAL+++S Sbjct: 165 -AAALKALPADVGVSEGIKLALKSLS 189 >gi|229071929|ref|ZP_04205140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus F65185] gi|228711225|gb|EEL63189.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus F65185] Length = 197 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDAERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -ALTTDQYIKKALSLL 192 >gi|212550754|ref|YP_002309071.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229470529|sp|B6YR38|RUVA_AZOPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212548992|dbj|BAG83660.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 196 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG I L D V+I+ + Y+++ + T L KI C L++ +R++ +L Sbjct: 1 MLDFIKGEIVELIPDSVIIETGNIGYMLFISLNTYFSLTKIKS-CKLYIYEVIREETHQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +RQ F L SV GVGA +A VLS ++ EL E I N + + GI K Sbjct: 60 FGFIDKKERQLFTHLISVPGVGANIARMVLSSLSVCELEEIIFSGNVSALQALKGIGNKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K ++ D N + AI+AL+ LG+ Q + Sbjct: 120 AERIIIDLKDKV-KPDNIPSSDTIITN-------ISSNITKEAITALITLGFSQSASQKV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + QII+ AL+ + Sbjct: 172 VNKIVSNNSSSTTIEQIIKKALKLL 196 >gi|229032072|ref|ZP_04188054.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1271] gi|228729264|gb|EEL80259.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1271] Length = 197 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 + + +YV+ID G+ Y I+ P + +F ++R+D + L+GF + +R Sbjct: 2 DYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVFTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|261418393|ref|YP_003252075.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61] gi|319767648|ref|YP_004133149.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52] gi|261374850|gb|ACX77593.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61] gi|317112514|gb|ADU95006.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52] Length = 194 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P + T++ ++R+ L Sbjct: 1 MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + A++AL LGY + + Sbjct: 120 ARQMILDLKGKL---------GALAAPAAARSAAPLSGALAEAVAALKALGYAEREIEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+ + Q ++ AL + Sbjct: 171 IPALRKEAMS---TEQYVKRALALL 192 >gi|134098596|ref|YP_001104257.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea NRRL 2338] gi|291008207|ref|ZP_06566180.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea NRRL 2338] gi|166200258|sp|A4FBA7|RUVA_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|133911219|emb|CAM01332.1| Holliday junction DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 200 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+V GV ++ TL+ L + G+ L+ +R+D + L Sbjct: 1 MIASVRGPVLSVGLDHAVIEVGGVGMAVHATPATLAGL-RRGEEARLWTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+ GVG R+A+ L+ + +L ++ N + Q+PG+ K Sbjct: 60 YGFADAEARDLFGLLQTASGVGPRLALATLAVLAPDQLCHALSDGNITTLTQVPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ ++ ALV LG+ QA + Sbjct: 120 AERLILELRDKVGTVAGTAGAGAQAPDR--------GRVRSEVSEALVGLGFSAKQAEQS 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL + ++D S ++R AL A+ Sbjct: 172 VEAVLAADGPVSDTSAVLRKALAAL 196 >gi|313901946|ref|ZP_07835363.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus DSM 13965] gi|313467792|gb|EFR63289.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus DSM 13965] Length = 221 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 5/192 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + G + D IDV GV + + +T L +G+ L +R+DQ L Sbjct: 1 MIAFLRGELAGFHGDEAWIDVGGVGFRVAVSRQTQRRLPPVGEPVRLLTRLVVREDQWSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V GVG RVA+ VLS +T +L +++LQ+ ++ ++PG+ K+ Sbjct: 61 YGFATADEQAAFDALVAVSGVGPRVALSVLSVLTPEDLRRAVVLQDPALLTRVPGVGPKL 120 Query: 121 ASRIMTELKGKAI-----SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A R++TEL+ + ++ + S +A++AL LGY + Sbjct: 121 ARRLLTELRDRLGQPLAEDGAAGGPAATGTAGAVPSPGTGEASPRDDALAALEALGYSRA 180 Query: 176 QATTAVVSVLKK 187 +A A+ +V + Sbjct: 181 EAEGALAAVAGQ 192 >gi|229817634|ref|ZP_04447916.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM 20098] gi|229785423|gb|EEP21537.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM 20098] Length = 205 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G +E + +I+V V Y + P LS L G ++ ++ QD I L Sbjct: 1 MIGSLRGTVEMVDTTQAVIEVGSVGYEVRMPSADLSRL-HTGQETRVWTYLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL ++ F+ L V GVG +VA+ +LS +TA +L +++ ++ +A+ PGI K Sbjct: 60 YGFLDSSSKKMFLQLIKVNGVGPKVALSLLSTLTANDLAKAVADNDATALAKAPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S+ +D+ + S A + L++LG+ Q A A Sbjct: 120 AQKIILELKG------SINLEDLGEKAPQSG--ASTDPGAKQVVEGLMSLGWHQQDAQYA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + + D Q++RLAL ++ Sbjct: 172 VQEACESNGIAMPLSQEDVPQVLRLALTSL 201 >gi|225023395|ref|ZP_03712587.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC 23834] gi|224943873|gb|EEG25082.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC 23834] Length = 193 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G + V+IDV GV Y ++T L +G+ +L+ + +R+D L Sbjct: 1 MISKLTGKLIEAIPPQVVIDVNGVAYEADVSMQTFYTLPPVGETVSLYTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL +I ++ K ++ PGI K Sbjct: 61 FGFGSHSERNTFRQLIKVSGIGAKTALGILSAMNADELAAAIAAEDIKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + V Q + + + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLTTFNGVQTQLAAQAG----------DSSEDIVSTLLALGYNEKEARAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 171 TKGI----PADTEVGEGVRLALKNL 191 >gi|332670539|ref|YP_004453547.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484] gi|332339577|gb|AEE46160.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484] Length = 204 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D +++V GV ++ TL+ L ++G TL +R+D + L Sbjct: 1 MIASVRGTVLAVRLDSAVVEVGGVGMLVQATPATLAGL-RVGAQATLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F ++Q+V GVG R+A+ +L+ T L ++ ++ + ++PGI K Sbjct: 60 FGFADADEREVFEVVQTVSGVGPRLALAMLAVHTPDGLRRAVAGEDLAALMRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + + S + + ALV LG+ A A Sbjct: 120 AQRIVLELGDRLGA--------PSGAGAPATSSAASDDRRDQVVEALVGLGWNAKAAGDA 171 Query: 181 VVSVLKKEKN---IADDSQIIRLALRAI 205 V +VL+ + + ++R ALR + Sbjct: 172 VSAVLQDAPGPVAADEVAGVLRAALRTL 199 >gi|229135245|ref|ZP_04264043.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST196] gi|228648223|gb|EEL04260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST196] Length = 197 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|163840742|ref|YP_001625147.1| Holliday junction DNA helicase RuvA [Renibacterium salmoninarum ATCC 33209] gi|189045763|sp|A9WSE5|RUVA_RENSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|162954218|gb|ABY23733.1| holliday junction DNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 214 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +IDV GV ++ +TL L ++G TL +R+D + L Sbjct: 1 MISFLRGPVAHIGLSAAVIDVGGVGMLVQATPKTLGTL-RLGQESTLTTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F +L +V G+G R+ + VL+ + + + + K ++PGI K+ Sbjct: 60 YGFADPDEREVFEILLTVSGIGPRLGLAVLAVLEPETIRVATSTGDGKTFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + +V A + ++A+ +LG+ + A + Sbjct: 120 AGRIVLELAGKLVPHGTV----------NGAPASPSAQWKPQVVAAMTSLGWSEKDALAS 169 Query: 181 VVSVLKKEKNIADD---SQIIRLALRAI 205 V + D ++I+R LR + Sbjct: 170 VEKATADSPELISDGNVAEILRTTLRWL 197 >gi|228910257|ref|ZP_04074075.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 200] gi|228849421|gb|EEM94257.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 200] Length = 197 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V+++ ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAVEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|229062116|ref|ZP_04199441.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH603] gi|228717268|gb|EEL68943.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH603] Length = 197 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTESFDAKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|24380422|ref|NP_722377.1| Holliday junction DNA helicase RuvA [Streptococcus mutans UA159] gi|44888487|sp|Q8CWW3|RUVA_STRMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24378447|gb|AAN59683.1|AE015030_13 putative Holliday junction DNA helicase RuvA [Streptococcus mutans UA159] Length = 197 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKGN+ + Y++++ G+ Y+I S +I +++ +R+D L Sbjct: 1 MYDYIKGNLTKITAKYIVLETGGLGYVINV-ANPYSFSNQINQAIQIYIHHVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV++I + + + P I K Sbjct: 60 YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + ++ V +K + + A+ AL+ LGY ++ Sbjct: 120 AQQMVLDLAGKFVDINEV------STDKSKVSTINNNQELEEAVEALLALGYKTNE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIEKFFEGTTDTAENYIKSALKML 195 >gi|89899549|ref|YP_522020.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118] gi|123091484|sp|Q220R4|RUVA_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89344286|gb|ABD68489.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118] Length = 190 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ V++D GV Y + P+ T L ++G +L +R+D L Sbjct: 1 MIGKLSGTLDDKNPPQVIVDCHGVGYEVLVPMSTFYNLPELGARVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG R A+ VLS ++ EL +++ LQ + ++PGI K Sbjct: 61 YGFATSQERAAFRELIKISGVGPRTALSVLSGMSVAELAQAVTLQEGGRLIKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + AL+ LGY Sbjct: 121 AER-------------LLLELKGKLGPDIGVAASVANDSQADILQALLALGYS----DKE 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LK + S+ IRLALRA+ Sbjct: 164 AAAALKALPSDVGVSEGIRLALRAL 188 >gi|299822806|ref|ZP_07054692.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi DSM 20601] gi|299816335|gb|EFI83573.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi DSM 20601] Length = 200 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + ++++++ V Y + + G +FV H+R+D + L Sbjct: 1 MYDYINGTVTDITPEFIVVEAGQVGYQL-ITGNPFAFQSMSGQTAKVFVYQHVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ A L+ +I ++ + + P + K Sbjct: 60 FGFKTKEERFLFKKLLSVSGIGPKSALAIIATGDANALIGAIEAEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK LS V KE+ + AI AL LGY + + Sbjct: 120 ARQIILDLKGK---LSDVDTSFAKMQRKEEDLTAGLTEALEEAILALEALGYNKKELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + EK I+LAL+ + Sbjct: 177 IPKL---EKEDLSSDAYIKLALQLM 198 >gi|226306411|ref|YP_002766371.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4] gi|259495653|sp|C0ZZ47|RUVA_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226185528|dbj|BAH33632.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4] Length = 199 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G LF +R+D + L Sbjct: 1 MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++++ V S + AL LG+ QA A Sbjct: 120 AERMVVELRDKVDAVATTAGAASGAVVG--------SSIRDQIVEALEGLGFPIKQAEQA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SVL + A S +R AL + Sbjct: 172 TDSVLAESPE-ATTSVALRSALSLL 195 >gi|260426467|ref|ZP_05780446.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45] gi|260420959|gb|EEX14210.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45] Length = 221 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G IE ED+VLIDV+GV YI+YC R L+ L + G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRIEYKGEDHVLIDVRGVGYIVYCSDRVLASLPRPGEAAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++WF LL +VQGVGA+ ++ +L + + +I L ++ I GI K Sbjct: 61 YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDANAIKAARGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------------MPSFAINAISAL 167 R++ ELK KA + ++ ++ E A+SAL Sbjct: 121 GLRVVNELKDKAPMVMAMGAGTIASAGPEVIDDAPIPSAPAQAQAAPSSAPAQSEALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGY +A AV + A +++IR ALR ++ Sbjct: 181 SNLGYAPGEAAAAVAQAAGEAP-TATTAELIRAALRLLA 218 >gi|23335124|ref|ZP_00120362.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Bifidobacterium longum DJO10A] gi|23465306|ref|NP_695909.1| holliday junction DNA helicase RuvA [Bifidobacterium longum NCC2705] gi|189439315|ref|YP_001954396.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium longum DJO10A] gi|227547258|ref|ZP_03977307.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621474|ref|ZP_04664505.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|44888506|sp|Q8G6B8|RUVA_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560004|sp|B3DRX9|RUVA_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|23325944|gb|AAN24545.1| probable holliday junction DNA helicase RuvA [Bifidobacterium longum NCC2705] gi|189427750|gb|ACD97898.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium longum DJO10A] gi|227212217|gb|EEI80113.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515935|gb|EEQ55802.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 208 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y + LS L G +F ++ QD I L Sbjct: 1 MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRLHA-GQDTRVFTYMNLSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL ++ F+ L V G+G +VA +LS +T ++L +I ++ +A+ PG+ K Sbjct: 60 HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S + Q + + + + L++LG+ Q A A Sbjct: 120 AQKIILELKG-----SIDLSQIEGASAQAATSKSPVDTGTEQVVEGLISLGWRQQDAQQA 174 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D +++RLAL + Sbjct: 175 VAEACAENDIPTPLATDDVPRVLRLALALM 204 >gi|282864188|ref|ZP_06273244.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE] gi|282560675|gb|EFB66221.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE] Length = 208 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L + +I+V G+ + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALTPNTAVIEVGGIGMALQCTPGTLSGL-RVGQEARLAASLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRIAVATGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + ++ S+ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGEPVG------AHIGQQGIGTAVSSSWRDQLQAALIGLGYATREADEA 173 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + + Q++R AL++++ Sbjct: 174 VSAVTPQAEAAVADGAQPPVPQLLRAALQSLN 205 >gi|229019645|ref|ZP_04176455.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1273] gi|229025883|ref|ZP_04182279.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1272] gi|228735435|gb|EEL86034.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1272] gi|228741648|gb|EEL91838.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1273] Length = 197 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDVESFDQKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|111023845|ref|YP_706817.1| Holliday junction DNA helicase motor protein [Rhodococcus jostii RHA1] gi|122955049|sp|Q0S1C7|RUVA_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110823375|gb|ABG98659.1| holliday junction DNA helicase [Rhodococcus jostii RHA1] Length = 200 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G L +R+D + L Sbjct: 1 MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GSEARLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPDALRAALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ S S + ALV LG+ QA A Sbjct: 120 AERMVVELRDKVDAVA-------STSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SVL + + S +R AL + Sbjct: 173 ADSVLAEAPE-STTSTALRSALSLL 196 >gi|289178595|gb|ADC85841.1| RuvA [Bifidobacterium animalis subsp. lactis BB-12] Length = 232 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG +E + ++DV GV + + P L+ + +G ++ + QD I L Sbjct: 26 MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 84 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL ++ F+ LQ V GVG +VA+ +LS + +L ++I + K +++ PG+ K Sbjct: 85 FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 144 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S+ + + L++LG+ Q A A Sbjct: 145 AQKIILELKG------SIDVDKIETGEPTSTQRIPTDKGVEQVVEGLMSLGWKQADAQQA 198 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V SV+ + ++RLAL ++ Sbjct: 199 VDSVISSSGIALPLEEGNVPTVLRLALTSL 228 >gi|213692039|ref|YP_002322625.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254766945|sp|B7GR17|RUVA_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|213523500|gb|ACJ52247.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458151|dbj|BAJ68772.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 208 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y P L L G +F ++ QD + L Sbjct: 1 MIGMLTGRVESVETDTALIDVGGVGYETRMPATDLGRLHA-GQDACVFTYLNLSQDSVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL ++ F+ L V G+G +VA +L +T ++L +I ++ +A+ PG+ K Sbjct: 60 YGFLDRDSKRVFLQLIKVSGIGPKVAQSLLGTMTPSQLARAIADNDAAALAKAPGLGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S + Q + ++ + + LV+LG+ Q A A Sbjct: 120 AQKIILELKG-----SVDLNQSDDASAGNAPYQPTVDAGVEQVVEGLVSLGWRQQDAQRA 174 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D +++RLAL + Sbjct: 175 VNEACAENDVPMPLASDDAPRVLRLALARM 204 >gi|256545112|ref|ZP_05472478.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC 51170] gi|256399153|gb|EEU12764.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC 51170] Length = 199 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ + ED +I+ + Y I T+ L +I + +F + ++R+D I L Sbjct: 1 MISYIIGEIKYIGEDNFVIENNNIGYFINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F LL SV +G + A+ +LS + ++ +I+ + + + GI K Sbjct: 60 FGFSSKDELEVFELLTSVSTIGPKNAIAILSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ + D+S N++ +I S + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMA--INDDISISNQDFDNITSNGEIEV-AREALLNLGYQRNSIDKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ + ++ +II+ +L+ + Sbjct: 177 LSSLKDSDLSL---EEIIKESLKRM 198 >gi|86139156|ref|ZP_01057726.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193] gi|85824000|gb|EAQ44205.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193] Length = 229 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV Y++YC RT+ L +G+ TL+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRTADHVLIDVRGVGYLVYCSERTMMTLPGVGEPVTLYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFTSLVEKEWHRLLTSVQGVGAKVSLAILGTLGPDGVSRAIALGDWGSVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---------------------SF 159 A RI+ +LK KA + ++ + P + Sbjct: 121 AQRIVLDLKDKAPGVMAMGGSLPDAIEGADLEAVVEPVEPAAPKKTARKAASKPSGAAAA 180 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+SAL NLGY A +AV + + AD+S +IR ALR ++ Sbjct: 181 SAGALSALGNLGYSPSDAASAVAEAAGENPD-ADESALIRAALRLLA 226 >gi|320011892|gb|ADW06742.1| Holliday junction DNA helicase RuvA [Streptomyces flavogriseus ATCC 33331] Length = 208 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TL+ L +IG L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPGTLAGL-RIGTDARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRTAVATGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + ++ S+ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGDPVG------ARIGQQGVGTPVSSSWRDQLQAALIGLGYATREADEA 173 Query: 181 VVSVLKKE------KNIADDSQIIRLALRAIS 206 V +V + A Q++R AL+ ++ Sbjct: 174 VTAVTPQAEAAIAGGGQAPVPQLLRAALQTLN 205 >gi|227518048|ref|ZP_03948097.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104] gi|227074484|gb|EEI12447.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104] Length = 223 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLDEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 196 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220 >gi|197106547|ref|YP_002131924.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum HLK1] gi|229560113|sp|B4R9Z1|RUVA_PHEZH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|196479967|gb|ACG79495.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum HLK1] Length = 204 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM-RQDQIR 59 MIG+++G + + E+ LIDV GV Y++ C RTLS L +G+ + VE+ Q + Sbjct: 1 MIGRLRGLVAEVGEEDALIDVMGVGYVVRCGSRTLSRLPAVGEETVIHVESVFGEQTGVT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R+ F+ L+++QGVG + A+ VL + EL ++ ++ +A+ G+ K Sbjct: 61 LYGFLGRDERRAFVTLRTIQGVGPKAALAVLDVLAPPELAAAVAREDKAAVARANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+ ELK K IS V + + S A A++AL+ LG + QA Sbjct: 121 LAQRIVVELKDKPISDGPVAAFHAQATTPQPIKV----SAAGEAVAALMGLGIAEPQARR 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V S + A+ +I+ AL+ + Sbjct: 177 VVESAALRLGEEAEPPALIKAALQEL 202 >gi|315282450|ref|ZP_07870861.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120] gi|313613902|gb|EFR87635.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120] Length = 201 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVFTAPGNDIVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L KE ++ D+ I+LAL+ + Sbjct: 177 IPK-LAKETDLTSDA-YIKLALQLM 199 >gi|90962101|ref|YP_536017.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius UCC118] gi|227891123|ref|ZP_04008928.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC 11741] gi|123391344|sp|Q1WT17|RUVA_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90821295|gb|ABD99934.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118] gi|227866997|gb|EEJ74418.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC 11741] Length = 201 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G I + Y+++DV GV Y +Y +FV +R + I L Sbjct: 1 MYEYLRGVITEVTPYYIVVDVNGVGYQVYV-ANPFKYEEDEHAEQKVFVYQAVRDNDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++Q F+ L V G+G + A+ +L+ L+ +I + + + PGI K Sbjct: 60 YGFKNSSEKQLFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK LS V ++ + + + + ++ AL LGY + + Sbjct: 120 AKQIILDLKGK---LSDVDSDMLTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K + DD +R LR + Sbjct: 177 SKKLEKYDGKSTDD--YLRQGLRLL 199 >gi|296117790|ref|ZP_06836373.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes DSM 20306] gi|295969021|gb|EFG82263.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes DSM 20306] Length = 211 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 4/209 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+ GV Y +TL+ L + GD + +++D L Sbjct: 1 MIASLSGEVLSIALDHAVIECGGVGYQFLATPKTLATLIR-GDHARVMTSMTVKEDARTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D DR F LQ+V G+G ++A+ LS + A E+ +I ++K + IPG+ ++ Sbjct: 60 YGFTNDEDRAMFHQLQAVSGLGPKLAIACLSVLDAREIAVAISNGDAKKLQTIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 + R+ ELK K + S Q + ++ + ALV LG+ + A Sbjct: 120 SERMALELKDKVNNFIGTPDASDSETTATQTGLPVGSGAIVDTVVEALVGLGFTEKAARP 179 Query: 180 AVVS--VLKKEKNIADDSQIIRLALRAIS 206 V S K + + ++R +L A+S Sbjct: 180 VVESHVAESKTPEKLETATVLRASLSALS 208 >gi|94991379|ref|YP_599479.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS10270] gi|123382379|sp|Q1JEH4|RUVA_STRPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94544887|gb|ABF34935.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes MGAS10270] Length = 198 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + NK + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYKAKE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ A Q I+ AL+ + Sbjct: 173 IRAFFEETSETA--EQYIKSALKLL 195 >gi|229076052|ref|ZP_04209023.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-18] gi|229098895|ref|ZP_04229831.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-29] gi|229105059|ref|ZP_04235711.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-28] gi|229117921|ref|ZP_04247283.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-3] gi|228665578|gb|EEL21058.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-3] gi|228678369|gb|EEL32594.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-28] gi|228684568|gb|EEL38510.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-29] gi|228707086|gb|EEL59288.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-18] Length = 197 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDVESFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|227555748|ref|ZP_03985795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22] gi|229550642|ref|ZP_04439367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 29200] gi|307268982|ref|ZP_07550345.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248] gi|307274076|ref|ZP_07555285.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855] gi|307284121|ref|ZP_07564291.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860] gi|307287114|ref|ZP_07567187.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109] gi|227175103|gb|EEI56075.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22] gi|229304208|gb|EEN70204.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 29200] gi|306501893|gb|EFM71183.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109] gi|306503492|gb|EFM72741.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860] gi|306509201|gb|EFM78262.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855] gi|306514651|gb|EFM83203.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248] gi|315026742|gb|EFT38674.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2137] gi|315033494|gb|EFT45426.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0017] gi|315036485|gb|EFT48417.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0027] gi|315148995|gb|EFT93011.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4244] gi|315151351|gb|EFT95367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0012] gi|315165799|gb|EFU09816.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1302] gi|315573928|gb|EFU86119.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309B] gi|315581880|gb|EFU94071.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309A] gi|327533913|gb|AEA92747.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus faecalis OG1RF] gi|329576228|gb|EGG57746.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1467] Length = 223 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 196 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220 >gi|254424412|ref|ZP_05038130.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335] gi|196191901|gb|EDX86865.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335] Length = 207 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEG--LYED---YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG +KG + + ++ GV Y + RTLS L ++G+ +F R+ Sbjct: 1 MIGYVKGILADSQKLPNGRVIATVEAGGVGYDMQVNPRTLSQLPQVGEPVRIFTHLQSRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D LFGF S +R F LL SV G+G+++ M +L+ + EL++S++ N++V+ + PG Sbjct: 61 DLQMLFGFSSKAERDVFRLLISVSGIGSQMGMSLLNALGLNELIQSVVNGNARVLTRTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI+ ELK K S + + + LV LGY Sbjct: 121 VGNKTAERIILELKTKLSEWRSHSGIVAPTGGP-------ISAVQEDVEMMLVALGYSNS 173 Query: 176 QATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206 + + A+V+V D IR A+ +S Sbjct: 174 EISKALVAVGNGTALSKSDDVEDWIREAIAWLS 206 >gi|304383692|ref|ZP_07366151.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella marshii DSM 16973] gi|304335216|gb|EFM01487.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella marshii DSM 16973] Length = 204 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG + +I+ GV Y + + T + + + L+V + R D Sbjct: 1 MIEYIKGELSEATPALAVIEASGVGYALNISLNTYTSV-QGKKEVKLYVHEVLSAGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R+ + LL SV GVGA A +LS +T EL I + +++ + GI Sbjct: 60 SFTLYGFFTRQERELYRLLISVSGVGANTARMILSAMTTAELCNVISTGDERMLKGVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K +S + + + + + + A+ AL LG+ Sbjct: 120 GLKTAQRIIIDLKDKIVSSGIAQELPTTAGH----VVATNSAVKDEAVGALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 ++ VV +LK ++ Q+++ AL+ I Sbjct: 176 SSKVVVEILKMHPDLP-VEQVVKQALKMI 203 >gi|332982456|ref|YP_004463897.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1 BON] gi|332700134|gb|AEE97075.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1 BON] Length = 194 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G IE +YV+IDV G+ + +Y + L+ + + L+V H+ + + L Sbjct: 1 MLAYLDGLIEHKSSNYVIIDVNGIGFKVYATTKILADMPDVKSRTRLYVHWHIGEGNMAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ F L SV GVG + A+ ++ ++ +++ +I+ + K +++ GI K Sbjct: 61 FGFASEQQVDMFESLISVSGVGPKGALALMDALSYEQILLAIVQGDEKSLSRAKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + D+ E S A+ AL++LGY +A Sbjct: 121 AQRIIMELKDKLHMPREIKSSDIGERIDE--------STYGQAVEALISLGYAPAEAARV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V +++ ++I+ ALR Sbjct: 173 LEGVTTDGRSL---EEVIKEALRR 193 >gi|299144015|ref|ZP_07037095.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518500|gb|EFI42239.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 198 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++Y++I+ YI+Y + L +I ++ +R+D + L Sbjct: 1 MIDYIKGIISELLDNYIVIENNFKGYIVYMSQSDIEQL-EIMQEVKIYTRLIIREDNMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ R+ F LL SV VG + +MG+LS ++A++++ +I+ +NSK + PGI K Sbjct: 60 YGFVNKDSRKLFDLLTSVTSVGPKASMGILSTLSASQIIVAILDENSKALTSSPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + D+ + + A+ AL++LGY + +A A Sbjct: 120 ADRIVLELKDKVSKYNFETRFDVKELKNSLKEEIDISP----AVEALISLGYNKYEAKKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + D S++I+ AL+ + Sbjct: 176 LTGI----DENFDVSKMIKEALKRL 196 >gi|332685820|ref|YP_004455594.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC 35311] gi|332369829|dbj|BAK20785.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC 35311] Length = 201 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I + Y++I+ G+ Y I GK+ +++ +R+D L Sbjct: 1 MFEYIIGTITFINPYYLVIETNGIGYQILVSNPYHYS-GKLEKKVKIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L V G+G + A+ +L+ L+ +I +N+ + + PG+ K Sbjct: 60 YGFREMEEKQLFLKLIGVSGIGPKSALAILALEDHGGLINAIADENASYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L + N+ + A+ AL LGY + Sbjct: 120 AQQMVLDLKGKLDELEMTPTAVKAMTNQPK---VKTNQALNEALEALCALGYNDREIKRI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K + Q + AL+ I Sbjct: 177 TPDL--KSMDSQSTDQYLSQALKLI 199 >gi|312901232|ref|ZP_07760515.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470] gi|311291609|gb|EFQ70165.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470] Length = 230 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 86 FGFCSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|56421127|ref|YP_148445.1| Holliday junction DNA helicase RuvA [Geobacillus kaustophilus HTA426] gi|297529245|ref|YP_003670520.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3] gi|81346764|sp|Q5KWQ9|RUVA_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56380969|dbj|BAD76877.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426] gi|297252497|gb|ADI25943.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3] Length = 194 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P + T++ ++R+ L Sbjct: 1 MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + A++AL LGY + + Sbjct: 120 ARQMILDLKGKL---------GALAAPAAARSAAPLSGALAEAVAALKALGYAEREIEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ + Q ++ AL + Sbjct: 171 IPALREEAMS---TEQYVKRALALL 192 >gi|290581353|ref|YP_003485745.1| putative Holliday junction DNA helicase [Streptococcus mutans NN2025] gi|254998252|dbj|BAH88853.1| putative Holliday junction DNA helicase [Streptococcus mutans NN2025] Length = 198 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKGN+ + Y++++ G+ Y+I S +I +++ +R+D L Sbjct: 2 MYDYIKGNLTKITAKYIVLEAGGLGYVINV-ANPYSFSNQINQAIQIYIHHVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV++I + + + P I K Sbjct: 61 YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + ++ V +K + + A+ AL+ LGY ++ Sbjct: 121 AQQMVLDLAGKFVDINEV------STDKSKVSTINNNQELEEAVEALLALGYKTNE---- 170 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 171 LKKIEKFFEGTTDTAENYIKSALKML 196 >gi|16800636|ref|NP_470904.1| Holliday junction DNA helicase RuvA [Listeria innocua Clip11262] gi|20455250|sp|Q92BI1|RUVA_LISIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|16414055|emb|CAC96799.1| ruvA [Listeria innocua Clip11262] gi|313618794|gb|EFR90690.1| holliday junction DNA helicase RuvA [Listeria innocua FSL S4-378] Length = 201 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG ++ + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIVKTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ +D I+LALR + Sbjct: 177 IPKMAKENDLTSD--AYIKLALRLM 199 >gi|254460781|ref|ZP_05074197.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium HTCC2083] gi|206677370|gb|EDZ41857.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium HTCC2083] Length = 222 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ D+V++DV+GV Y++YC RTL+ L + G+ +L+ + +R+D ++L Sbjct: 1 MIGKLSGRIDYRAADHVMMDVRGVGYMVYCSDRTLAGLPRAGEVVSLYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + +I L + I G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALADVTAIKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI--------------CSMPSFAINAISA 166 A R++ ELK KA + ++ + E S A+SA Sbjct: 121 AQRVVIELKDKAPGVMAMGGGTPATAMGEVPAADDFDVIETSAVKVSVPSASAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGY +A +AV + A S +IR AL+ ++ Sbjct: 181 LSNLGYAPSEAASAVAEAAGADPE-ATTSALIRAALKLLA 219 >gi|163742241|ref|ZP_02149629.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis 2.10] gi|161384571|gb|EDQ08952.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis 2.10] Length = 229 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV YI+YC RT++ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA----------------- 163 A RI+ +LK KA + ++ ++ + A Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTIADAMDGPGLDVVEPAEPVSTAKKPRKAPPKAPSGAAAA 180 Query: 164 ----ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A AV + A+++++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPD-ANEAELIRAALRLLA 226 >gi|295112392|emb|CBL31029.1| Holliday junction DNA helicase subunit RuvA [Enterococcus sp. 7L76] Length = 218 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 15 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 73 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 74 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 133 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 134 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 191 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 192 ITKQLEALGETTTDV--YLSNALKFM 215 >gi|307276309|ref|ZP_07557435.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134] gi|312908743|ref|ZP_07767683.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 512] gi|312979206|ref|ZP_07790910.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 516] gi|306506974|gb|EFM76118.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134] gi|310625342|gb|EFQ08625.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 512] gi|311287971|gb|EFQ66527.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 516] gi|315171308|gb|EFU15325.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1342] Length = 223 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEV--VTTSNQALAEALEALSALGYSDREIKR 196 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220 >gi|296454195|ref|YP_003661338.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JDM301] gi|312132689|ref|YP_004000028.1| ruva [Bifidobacterium longum subsp. longum BBMN68] gi|317483238|ref|ZP_07942233.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp. 12_1_47BFAA] gi|322689208|ref|YP_004208942.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis 157F] gi|322691274|ref|YP_004220844.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JCM 1217] gi|291516874|emb|CBK70490.1| Holliday junction DNA helicase subunit RuvA [Bifidobacterium longum subsp. longum F8] gi|296183626|gb|ADH00508.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JDM301] gi|311773647|gb|ADQ03135.1| RuvA [Bifidobacterium longum subsp. longum BBMN68] gi|316915307|gb|EFV36734.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp. 12_1_47BFAA] gi|320456130|dbj|BAJ66752.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JCM 1217] gi|320460544|dbj|BAJ71164.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis 157F] Length = 208 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y + LS L G +F ++ QD I L Sbjct: 1 MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRLHA-GQDTRVFTYMNLSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL ++ F+ L V G+G +VA +LS +T ++L +I ++ +A+ PG+ K Sbjct: 60 HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S + Q + + + + L++LG+ Q A A Sbjct: 120 AQKIILELKG-----SIDLSQIEGASAQAAISKSPVDTGTEQVVEGLISLGWRQQDAQQA 174 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D +++RLAL + Sbjct: 175 VAEACAENDIPTPLATDDVPRVLRLALALM 204 >gi|326329831|ref|ZP_08196151.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium Broad-1] gi|325952417|gb|EGD44437.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium Broad-1] Length = 200 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 8/195 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++V G+ + C TL+ L + G+ L +R+D + L Sbjct: 1 MIASVRGKVAAVSLSTAVVEVGGIGIELLCTPNTLATL-RTGEEAHLPTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F LLQ+ GVG ++A +L+ ++ + +I +++K + ++PGI K Sbjct: 60 FGFTDTDERTLFELLQTASGVGPKLAQAMLAVLSPDGIRLAISTEDAKTLTKVPGIGQKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + A + AL+ LGY A A Sbjct: 120 AQRVILELKDRI-------GAPTGSASAPAAVQQGAAPWRDQVTEALIGLGYNARDADKA 172 Query: 181 VVSVLKKEKNIADDS 195 V ++ + + A+ S Sbjct: 173 VTAIEPEAGDHANIS 187 >gi|210635285|ref|ZP_03298481.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279] gi|210158446|gb|EEA89417.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279] Length = 208 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + +IDV GV + + T + L ++G L+ +R+D L Sbjct: 1 MISQLHGTVAEATPSMAVIDVNGVGFELGISGTTAAGLPQVGGKVLLYTRMVVREDSCTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L +V GVGA++A+ +L+ + +L ++ ++ K +A +PG+ K Sbjct: 61 FGFASKDERTMFDKLVAVSGVGAKLALAILTTFSVPQLYAVVMAEDDKGMATVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS--MPSFAINAISALVNLGYGQDQAT 178 A R++ ELKG S+ ++ + P+ +A +AL+++G+ + + Sbjct: 121 AQRLILELKGAFSKDRSLAGSAVAASIPLPLDVARPVAPNAMDDASAALLSMGFTPAEVS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + ++ AL+ + Sbjct: 181 LALS---GYDGADMRVEDLLAAALKRL 204 >gi|94496110|ref|ZP_01302688.1| probable holliday junction DNA helicase protein [Sphingomonas sp. SKA58] gi|94424289|gb|EAT09312.1| probable holliday junction DNA helicase protein [Sphingomonas sp. SKA58] Length = 202 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K++G ++ D+ +IDV GV Y++ RTL+ LG +G+ T+ E + +D IRL Sbjct: 1 MIAKLRGLLDSTGIDHAVIDVGGVGYLVGASSRTLAALGPVGEAVTIHTEMLVAEDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R W+ LL VQGVG+RVA+ +LS + EL ++ + ++ + G+ K+ Sbjct: 61 VGFARADERDWYRLLTHVQGVGSRVALAILSALEPAELHRAVATGDKAMVTRANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + A + + + +A+SAL NLG+ +A+ A Sbjct: 121 AQRIVNELKDKIGA-----APAGGPIGVGGAVAMPVGNMSTDALSALQNLGFKPAEASAA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A ++RLALR Sbjct: 176 VAAAEGELGEGASLDALVRLALRK 199 >gi|99082212|ref|YP_614366.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040] gi|99038492|gb|ABF65104.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040] Length = 229 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+V+IDV+GV YI+YC RTL+ L +G+ L+ E +R+D ++L Sbjct: 1 MIGKLTGRLDYKTPDHVMIDVRGVGYIVYCSDRTLASLPAVGEAVQLYTELLVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++++W LL SVQGVGA+V++ +LS + + +I L + + G+ K Sbjct: 61 FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI---------------------CSMPSF 159 A RI+ +LK KA S+ ++ + + + Sbjct: 121 AQRIVLDLKDKAPSVMAMGGTVTEALEGPELDAVVEPAAEAPAKPARKAAPKAPTGAAAA 180 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+SAL NLGYG A AV + A ++++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAGAVAEAAANNPD-AGEAELIRAALRLLA 226 >gi|260431115|ref|ZP_05785086.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis ITI-1157] gi|260414943|gb|EEX08202.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis ITI-1157] Length = 223 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 16/221 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ D++LIDV+GV YI+YC RT++ L +G+ +L+ + +R+D ++L Sbjct: 1 MIGKLTGRIDYRAADHLLIDVRGVGYIVYCSDRTMAALPGVGEAVSLYTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFLSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWGAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-------------- 166 A RI+ +LK KA + ++ ++ A + A + A Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPVAEVVEPADPAPAPVRAPKPGAGAASAGALS 180 Query: 167 -LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG +A +AV + A ++++IR AL+ ++ Sbjct: 181 ALSNLGYGPSEAASAVAEAAANLPD-AGEAELIRAALKLLA 220 >gi|121610984|ref|YP_998791.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae EF01-2] gi|166231456|sp|A1WQ66|RUVA_VEREI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|121555624|gb|ABM59773.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae EF01-2] Length = 191 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ + L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSSFYNLPAVGERISLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R+A+ +LS ++ +L ++I Q + + ++PG+ + Sbjct: 61 YGFATAPERQAFRALIKITGVGPRMALSILSGMSVADLAQAIARQEAARLVKVPGVGKRT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + + + +H ++ + + AL+ LGY +A A Sbjct: 121 AER------------LLLELKGKLGADLGASHGPAVSGAQADILQALLALGYNDKEAAAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + + S I+ AL+A+ Sbjct: 169 LKALPAQ----VEVSDGIKWALKAL 189 >gi|94989443|ref|YP_597544.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS9429] gi|94993332|ref|YP_601431.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS2096] gi|123080353|sp|Q1JJH3|RUVA_STRPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123382245|sp|Q1J9C4|RUVA_STRPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94542951|gb|ABF33000.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS9429] gi|94546840|gb|ABF36887.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes MGAS2096] Length = 198 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + NK + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK------AGNTQLDEAIEALLALGYKATE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195 >gi|71904448|ref|YP_281251.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS6180] gi|90135995|sp|Q48QW4|RUVA_STRPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71803543|gb|AAX72896.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS6180] Length = 198 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + NK + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK------AGNTQLDEAIEALLALGYKAAE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195 >gi|301301358|ref|ZP_07207500.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214787|gb|ADJ79203.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus salivarius CECT 5713] gi|300851018|gb|EFK78760.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 201 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G I + Y+++DV GV Y +Y +FV +R + I L Sbjct: 1 MYEYLRGVITEVTPYYIVVDVNGVGYQVYV-ANPFKYEEDEHVEQKVFVYQAVRDNDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++Q F+ L V G+G + A+ +L+ L+ +I + + + PGI K Sbjct: 60 YGFKNSSEKQLFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK LS V ++ + + + + ++ AL LGY + + Sbjct: 120 AKQIILDLKGK---LSDVDSDMLTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K + DD +R LR + Sbjct: 177 SKKLEKYDGKSTDD--YLRQGLRLL 199 >gi|315143243|gb|EFT87259.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2141] Length = 230 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 86 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|15675869|ref|NP_270043.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes M1 GAS] gi|21911339|ref|NP_665607.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS315] gi|28896713|ref|NP_803063.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes SSI-1] gi|71911615|ref|YP_283165.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS5005] gi|94995290|ref|YP_603388.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS10750] gi|54039576|sp|P66752|RUVA_STRP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042204|sp|P66751|RUVA_STRP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123257497|sp|Q1J492|RUVA_STRPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13623103|gb|AAK34764.1| putative Holiday junction DNA helicase [Streptococcus pyogenes M1 GAS] gi|21905554|gb|AAM80410.1| putative Holiday junction DNA helicase [Streptococcus pyogenes MGAS315] gi|28811967|dbj|BAC64896.1| putative Holliday junction DNA helicase [Streptococcus pyogenes SSI-1] gi|71854397|gb|AAZ52420.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS5005] gi|94548798|gb|ABF38844.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes MGAS10750] Length = 198 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + NK + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYKAKE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195 >gi|311113689|ref|YP_003984911.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia dentocariosa ATCC 17931] gi|310945183|gb|ADP41477.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia dentocariosa ATCC 17931] Length = 206 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G++ + + ++DV G ++ RTLS L + G TL +R+D + L Sbjct: 1 MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TATE+ ++ + K ++PGI K Sbjct: 60 YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S E+ ++ + AL +LG+ + A A Sbjct: 120 ARRIVLELAGKLI---------LSKDQAEENAPAQGIAWKPQVMDALTSLGWSEKDADAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA-ISC 207 + + ++ + + + + ALR ++ Sbjct: 171 IDAYVQHNPDA--EKEAVSAALRGVLAS 196 >gi|257440216|ref|ZP_05615971.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii A2-165] gi|257197250|gb|EEU95534.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii A2-165] Length = 202 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V++ GV Y + CP L +G TL+ + ++ I L Sbjct: 1 MIYSLSGKIIKKTLNAVVVSCGGVGYYVQCPTSVAGALPGVGREATLYTVMSVAENDISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F LL +V GVG +V + +LS + + +I + K G+ K+ Sbjct: 61 YGFATEEQQSCFELLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ + A A AI+ALV+LGY Q +A A Sbjct: 121 AQRIVLELKDKVAK---GFVDGINLEDVGAATAAPAAQGAGQAIAALVSLGYSQSEAALA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +II+LALR ++ Sbjct: 178 VSKIDASLP----VEEIIKLALRGMA 199 >gi|322374230|ref|ZP_08048762.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150] gi|321276834|gb|EFX53907.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150] Length = 196 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L S K + + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAELP-------SETTKTTPNQPAGNHQLDEAMEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + A Q I+ AL+ + Sbjct: 172 VKAFFDGTNETA--EQYIKSALKML 194 >gi|315923964|ref|ZP_07920192.1| crossover junction ATP-dependent DNA helicase RuvA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622804|gb|EFV02757.1| crossover junction ATP-dependent DNA helicase RuvA [Pseudoramibacter alactolyticus ATCC 23263] Length = 231 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 2/192 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IKG + D V+I+ G+ Y ++ + T++ L + + L + R+D + L+ Sbjct: 29 FEYIKGELSAQSADTVVIENNGIGYRVHVSLTTIAELPPLHEQLKLLLYPAFREDDVTLY 88 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L S+ G+G + AMG+LS+ EL+ I+ ++K IA+ PGI K A Sbjct: 89 GFATAEERGLFGTLISISGIGPKAAMGLLSQFAEPELIRHIVNADAKAIARAPGIGKKTA 148 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI+ ELK + + V ++ + V A + + + ++ L+ LGY +A+ V Sbjct: 149 ERIILELKDRYKDV--VAEEGDAPVGGATAKLRAADNLTNEGVNGLLGLGYTYAEASDLV 206 Query: 182 VSVLKKEKNIAD 193 L + I + Sbjct: 207 ARALAPDMTIEE 218 >gi|184154991|ref|YP_001843331.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO 3956] gi|227514529|ref|ZP_03944578.1| crossover junction endoribonuclease subunit A [Lactobacillus fermentum ATCC 14931] gi|260663386|ref|ZP_05864277.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum 28-3-CHN] gi|229560093|sp|B2GB19|RUVA_LACF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183226335|dbj|BAG26851.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO 3956] gi|227087086|gb|EEI22398.1| crossover junction endoribonuclease subunit A [Lactobacillus fermentum ATCC 14931] gi|260552238|gb|EEX25290.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum 28-3-CHN] Length = 200 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + D++++DV GV Y + + +F+ +++D I L Sbjct: 1 MFEYLTGLITMVSPDFIVVDVNGVGYRVAV-ANPYAYQEDDQQAVQVFIYQAVKEDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G + A+ +L+ L+++I + K +++ PGI K Sbjct: 60 FGFATQAEKRLFTQLIGVSGIGPKSALAILATPDHQGLIDAIQNGDDKYLSKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K +++ VQ D + + A +LGY Q Sbjct: 120 ASRIIIELKDKVVAVQDEVQLDFTAPGPLGPSAALQDALAAL-----ESLGYTTKQVER- 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L+ + + + L+ +S Sbjct: 174 VQKQLEGLQGELSTNDYLSQGLKLLS 199 >gi|229547070|ref|ZP_04435795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322] gi|312952497|ref|ZP_07771365.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102] gi|229307799|gb|EEN73786.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322] gi|310629593|gb|EFQ12876.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102] gi|315153490|gb|EFT97506.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0031] gi|315155061|gb|EFT99077.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0043] gi|315158504|gb|EFU02521.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0312] Length = 223 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTVTEV--VTTSNQALAEALEALSALGYSDREIKR 196 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220 >gi|19746986|ref|NP_608122.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS8232] gi|24212371|sp|Q8NZ27|RUVA_STRP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|19749241|gb|AAL98621.1| putative Holliday junction DNA helicase [Streptococcus pyogenes MGAS8232] Length = 198 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTKDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + NK + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK------AGNTQLDEAIEALLALGYKATE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195 >gi|223933912|ref|ZP_03625874.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591] gi|302023155|ref|ZP_07248366.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05HAS68] gi|330831910|ref|YP_004400735.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3] gi|223897414|gb|EEF63813.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591] gi|329306133|gb|AEB80549.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3] Length = 196 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ QGV YI+ + G++ T++ +R+D L Sbjct: 1 MYDYIKGILTKITAKYIVVETQGVGYILQV-ANPYAYSGQVQQEVTVYTHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV +I +N + + P I K Sbjct: 60 YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +Q S A+ A+ LGY + Sbjct: 120 AQQMILDLEGKFVMSEEAGPV-------QQVAPSSENIALDEAMEAMEALGYRPAE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A I+ AL+ + Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194 >gi|145220343|ref|YP_001131052.1| Holliday junction DNA helicase RuvA [Prosthecochloris vibrioformis DSM 265] gi|189045761|sp|A4SGE1|RUVA_PROVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145206507|gb|ABP37550.1| Holliday junction DNA helicase subunit RuvA [Chlorobium phaeovibrioides DSM 265] Length = 200 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + +++V G+ Y T L ++G L+ +R+D ++L Sbjct: 1 MYAYFRGRLVSCLPEEAVLEVSGIAYRFLVSAGTARQLPEVGTETILYTHLSVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F LL GVG ++A+ VLS + E+ E+I+ + + I G+ K Sbjct: 61 YGFATEEEKQLFRLLLLTSGVGPKLALAVLSGMAVPEVHEAILANAPERLFGITGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + L+ V S F +A++AL+ LG+ + A A Sbjct: 121 AARIILELRDKILKLAPVGSAVASVAADRGG-------FREDAVNALMTLGFPRPVANQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ E + A +I+ AL + Sbjct: 174 VGCALEPEPD-ASLEVVIKRALATM 197 >gi|289434813|ref|YP_003464685.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171057|emb|CBH27599.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 201 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTITTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ V ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYSTRELKKI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ +D I+LALR + Sbjct: 177 IPKLAKEVDLTSD--AYIKLALRLM 199 >gi|118467715|ref|YP_887263.1| Holliday junction DNA helicase RuvA [Mycobacterium smegmatis str. MC2 155] gi|166230568|sp|A0QWH5|RUVA_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118169002|gb|ABK69898.1| holliday junction DNA helicase RuvA [Mycobacterium smegmatis str. MC2 155] Length = 195 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ R F+ L V GVG ++A+ L+ L +++ + + ++PGI + Sbjct: 60 YGFVDGDARDLFLTLLGVSGVGPKIALATLAVYDPQALRQALADGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V+ + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKI-----------GPVSAGGGAAVGGHAIRGPVVEALVGLGFAAKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + S + R AL + Sbjct: 169 TDKVLANDPEATTSSAL-RAALSML 192 >gi|254976401|ref|ZP_05272873.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-66c26] gi|255093787|ref|ZP_05323265.1| Holliday junction DNA helicase RuvA [Clostridium difficile CIP 107932] gi|255315538|ref|ZP_05357121.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-76w55] gi|255518201|ref|ZP_05385877.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-97b34] gi|255651317|ref|ZP_05398219.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-37x79] gi|260684381|ref|YP_003215666.1| Holliday junction DNA helicase RuvA [Clostridium difficile CD196] gi|260688040|ref|YP_003219174.1| Holliday junction DNA helicase RuvA [Clostridium difficile R20291] gi|306521149|ref|ZP_07407496.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-32g58] gi|260210544|emb|CBA65075.1| holliday junction DNA helicase [Clostridium difficile CD196] gi|260214057|emb|CBE06222.1| holliday junction DNA helicase [Clostridium difficile R20291] Length = 200 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 1 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS ++ +L I+ ++ +++ PG+ K Sbjct: 60 CGFVSREELKMFELLTSVSKIGPKVALSILSFASSAQLGAYILSEDIGKLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + ++ ALV LGY ++ A Sbjct: 120 AERIVLELKDKVDKNNIEFEPTL-------LSQKPTLISQDESVDALVALGYTLSESKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K N II+ AL Sbjct: 173 VQKCKKDGMN---TEAIIKKAL 191 >gi|255327194|ref|ZP_05368269.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC 25296] gi|255295812|gb|EET75154.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC 25296] Length = 206 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+V G ++Y RTLS L + G+ T+ +R++ + L Sbjct: 1 MIASLTGRVAQVGLDHAVINVNGFGMLVYATARTLSKL-RTGEEATVLTTMIVREESMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TA E+ ++ + K ++PGI K Sbjct: 60 YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S ++ + + + AL +LG+ + A+ A Sbjct: 120 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA-ISC 207 + + ++ + + ALR ++ Sbjct: 171 IDAYVQHNPAAETEPVGV--ALRGVLAS 196 >gi|183601646|ref|ZP_02963016.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis HN019] gi|219683820|ref|YP_002470203.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis subsp. lactis AD011] gi|241190856|ref|YP_002968250.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196262|ref|YP_002969817.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254766944|sp|B8DUE8|RUVA_BIFA0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183219252|gb|EDT89893.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis HN019] gi|219621470|gb|ACL29627.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis subsp. lactis AD011] gi|240249248|gb|ACS46188.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250816|gb|ACS47755.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793845|gb|ADG33380.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis V9] Length = 207 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG +E + ++DV GV + + P L+ + +G ++ + QD I L Sbjct: 1 MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL ++ F+ LQ V GVG +VA+ +LS + +L ++I + K +++ PG+ K Sbjct: 60 FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S+ + + L++LG+ Q A A Sbjct: 120 AQKIILELKG------SIDVDKIETGEPTSTQRIPTDKGVEQVVEGLMSLGWKQADAQQA 173 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V SV+ + ++RLAL ++ Sbjct: 174 VDSVISSSGIALPLEEGNVPTVLRLALTSL 203 >gi|313623659|gb|EFR93815.1| holliday junction DNA helicase RuvA [Listeria innocua FSL J1-023] Length = 201 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG ++ + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIVKTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ +D I+LAL+ + Sbjct: 177 IPKMAKENDLTSD--AYIKLALQLM 199 >gi|169629967|ref|YP_001703616.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus ATCC 19977] gi|229560105|sp|B1MCJ1|RUVA_MYCA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169241934|emb|CAM62962.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus] Length = 202 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+V+I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIASVNGEVIDIALDHVVIEAAGVGYRVNATPATLSTL-RRGTQIRLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFTDTDARDLFTTLLGVSGVGPKIAMATLAVYDAPTLRQALADGDVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + + + AL+ LG+ QA A Sbjct: 120 AERLVLELREKVAA---------APGGTTELGRGTASLVRSQVVEALIGLGFAAKQAEQA 170 Query: 181 VVSVLKKEKN---IADDSQIIRLALRAI 205 +VL ++ AD S ++R AL + Sbjct: 171 TDTVLAQDNPGDTGADVSGVLRSALALL 198 >gi|260903852|ref|ZP_05912174.1| Holliday junction DNA helicase, RuvA subunit [Brevibacterium linens BL2] Length = 206 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 11/206 (5%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + D+++I GV + TLS + G L +R+D + LF Sbjct: 10 ISFLSGTVHRIAADHLVILTYGVGRRVNVTPDTLSN-TRHGADIELVTTLVVREDSMTLF 68 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF ++ + F +L S+ G+G R+AM +LS + EL +I Q++ + ++PGI K A Sbjct: 69 GFGTEDENHTFEVLLSISGIGPRLAMAILSVMGPGELAAAISNQDANALTRVPGIGKKGA 128 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 SRI+ EL+ K LS+ E S + ALV LG+ + QA V Sbjct: 129 SRIILELENKLPKLSA----------SEPGPQLSFGGANQQVVDALVGLGWKEAQAADVV 178 Query: 182 VSVLKKEKNIADDSQIIRLALRAISC 207 V+ A S +++ +L+ + Sbjct: 179 QEVVNDLGQNAGTSALLKASLKVLGA 204 >gi|15604250|ref|NP_220766.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii str. Madrid E] gi|6226115|sp|Q9ZDE6|RUVA_RICPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3860942|emb|CAA14842.1| HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) [Rickettsia prowazekii] gi|292571994|gb|ADE29909.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii Rp22] Length = 199 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 74/203 (36%), Positives = 122/203 (60%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DYV+IDV GV Y++Y +TL+ L + G F LF+ETH+R++ I L Sbjct: 1 MIGKLNGKIDSHCDDYVIIDVNGVGYLVYASGKTLAKLVE-GKFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G ++A+ +LS +T T++ +I + + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIQIAINNDDRNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM ELK K + S S + ++I S+ + ALVNLG+ + +A Sbjct: 120 AERIMLELKDKITKIFS------SSAIIKDSNISSI--AINEVMKALVNLGFTRFEAQNT 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 172 VQGIITQNPKISID-ELIKTALK 193 >gi|312903815|ref|ZP_07762987.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635] gi|310632759|gb|EFQ16042.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635] gi|315160794|gb|EFU04811.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0645] gi|315168284|gb|EFU12301.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1341] gi|315579775|gb|EFU91966.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0630] Length = 230 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 86 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEV--VTTSNQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|306826474|ref|ZP_07459785.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus pyogenes ATCC 10782] gi|304431333|gb|EFM34331.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus pyogenes ATCC 10782] Length = 198 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + NK + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPQETGNTKARSNK------AGNTQLDEAIEALLALGYKATE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195 >gi|146317720|ref|YP_001197432.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05ZYH33] gi|146319910|ref|YP_001199621.1| Holliday junction DNA helicase RuvA [Streptococcus suis 98HAH33] gi|253750976|ref|YP_003024117.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84] gi|253752876|ref|YP_003026016.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7] gi|253754701|ref|YP_003027841.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407] gi|166231447|sp|A4VYN2|RUVA_STRS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166231449|sp|A4VSE3|RUVA_STRSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145688526|gb|ABP89032.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus suis 05ZYH33] gi|145690716|gb|ABP91221.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus suis 98HAH33] gi|251815265|emb|CAZ50830.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84] gi|251817165|emb|CAZ54886.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407] gi|251819121|emb|CAR44199.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7] gi|292557520|gb|ADE30521.1| Holliday junction DNA helicase RuvA [Streptococcus suis GZ1] gi|319757228|gb|ADV69170.1| Holliday junction DNA helicase RuvA [Streptococcus suis JS14] Length = 196 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ QGV YI+ + G++ T++ +R+D L Sbjct: 1 MYDYIKGILTKITAKYIVVETQGVGYILQV-ANPYAYSGQVQQEVTVYTHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV +I +N + + P I K Sbjct: 60 YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +Q S A+ A+ LGY + Sbjct: 120 AQQMILDLEGKFVMSEEAGPV-------QQVAPSSENIALEEAMEAMEALGYRPAE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A I+ AL+ + Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194 >gi|159043653|ref|YP_001532447.1| Holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12] gi|189045752|sp|A8LHP9|RUVA_DINSH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157911413|gb|ABV92846.1| holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12] Length = 224 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 19/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + D++++DV+GV Y++ C RTL+ + G LF E +R+D ++L Sbjct: 1 MIGRLSGVLVYRGRDHIVLDVRGVGYVVQCSERTLAGMPAPGGPVALFTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+++W LL SVQGVGA+ +M +LS + + +I L + + + G+ KI Sbjct: 61 YGFPTLLEKEWHRLLTSVQGVGAKASMSILSTLGVDGVGRAIALGDWGALRKAQGVGPKI 120 Query: 121 ASRIMTELKGKAI-----------SLSSVVQQDMSC---VNKEQAHICSMPSFAIN---A 163 A R++ ELK K +L V++ M+ + A ++PS A + A Sbjct: 121 AQRVVNELKDKGPEVMAMGGTLEAALDGVIEDGMAASEGIEPPSAARPAVPSAASDQAGA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SALVNLGYGQ +A + + ++ IIR ALR ++ Sbjct: 181 LSALVNLGYGQGEAAS--AVATAAGEGAVGETDIIRAALRLLA 221 >gi|209560229|ref|YP_002286701.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes NZ131] gi|226698743|sp|B5XJ07|RUVA_STRPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209541430|gb|ACI62006.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes NZ131] Length = 198 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTHSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + NK + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYTATE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195 >gi|256855044|ref|ZP_05560405.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8] gi|307291531|ref|ZP_07571408.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411] gi|256709557|gb|EEU24604.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8] gi|306497396|gb|EFM66936.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411] gi|315028754|gb|EFT40686.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4000] Length = 230 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 86 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--LTTSNQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|317500339|ref|ZP_07958564.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 8_1_57FAA] gi|316898280|gb|EFV20326.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 8_1_57FAA] Length = 184 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 6/186 (3%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 G+ Y ++ P + L+ L +G+ L+ ++R+D ++LFGFL+ D + F L+ V G+ Sbjct: 2 GGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQLFGFLTKDDLEIFRLVIGVSGI 61 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141 G + + +LS ++ EL +I+ ++K+I+ PGI K A +++ EL+ K + ++ Sbjct: 62 GPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKTAEKLIVELRDKV-DIEKMLDH 120 Query: 142 DMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIR 199 Q + S A+ ALV LGYG ++ AV K I++ Sbjct: 121 AAHPEETIQTDMAKTSANEMQSEAVQALVALGYGSAESLRAVK---KTSVQCQTVEDILK 177 Query: 200 LALRAI 205 AL+ + Sbjct: 178 EALQYL 183 >gi|81427980|ref|YP_394979.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp. sakei 23K] gi|90135183|sp|Q38YR0|RUVA_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78609621|emb|CAI54667.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp. sakei 23K] Length = 203 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 9/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV+++VQG+ Y + + + +FV +R I L Sbjct: 1 MYEYLKGLVTAVNPYYVVLEVQGIGYQLQV-ANPYRYTESMSEVVQIFVHQAVRDTDITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++Q F L SV G+G + A+ +L+ + L+++I+ + + + PG+ K Sbjct: 60 FGFYDLDEKQLFQKLISVSGIGPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +LKGK L + +A++AL LGY + Sbjct: 120 AQQIALDLKGKLGDLEQ--SATLVGQTAIDLGSQGDSPELSDALAALSALGYSARE---- 173 Query: 181 VVSVLKKEKNIA--DDSQIIRLALRAI 205 V ++ K + A Q +R LR + Sbjct: 174 VKAITPKLTDFAAQTTDQYLREGLRLL 200 >gi|68536132|ref|YP_250837.1| holliday junction DNA helicase [Corynebacterium jeikeium K411] gi|90134845|sp|Q4JVD8|RUVA_CORJK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68263731|emb|CAI37219.1| holliday junction DNA helicase [Corynebacterium jeikeium K411] Length = 211 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DYV I+ GV Y T++ L + G+ + +R+D L Sbjct: 1 MIASLRGTVIDKGLDYVTIECAGVGYQCSGTATTIAELPR-GEEVFVTTALVVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +++ F LQSV GVGAR+A+ +LS IT EL ++ + K + + PG+ ++ Sbjct: 60 YVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQRAPGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R+ +LKGK L + P + ALV LG+ + + Sbjct: 120 AERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGFTESK 179 Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAI 205 A T + +VL + D S ++R +L AI Sbjct: 180 AGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210 >gi|323143601|ref|ZP_08078278.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT 12066] gi|322416664|gb|EFY07321.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT 12066] Length = 207 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M G ++G + + VLI+V GV Y + P+ +L+ + + + ++V +R+D L Sbjct: 1 MFGSLRGKVLRIDGVTVLIEVGGVGYEVEMPVTSLAKI-SVNEEEFIYVHHVVREDDELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF DR F L V GVG ++A+ VLS A + + ++ + + Q+PG+ K Sbjct: 60 YGFCDLSDRTLFRELIKVNGVGPKLALAVLSSFNAHDFIAAVTSGRTGALTQVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179 A R+M ELK + L + ++K + + A A+SAL+ LGY + A Sbjct: 120 AERLMVELKDRLDKLPLSDTVSTADLSKVNGMAAVVGNIAVDEAVSALIGLGYKEALAFE 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 V SV K+ D QII AL IS Sbjct: 180 YVNSVAKEGM---DTKQIIVAALGLIS 203 >gi|50915147|ref|YP_061119.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS10394] gi|139474559|ref|YP_001129275.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str. Manfredo] gi|68053071|sp|Q5X9H7|RUVA_STRP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166231446|sp|A2RGV1|RUVA_STRPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|50904221|gb|AAT87936.1| Holliday junction DNA helicase [Streptococcus pyogenes MGAS10394] gi|134272806|emb|CAM31083.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str. Manfredo] Length = 198 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + NK + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYKATE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195 >gi|239907719|ref|YP_002954460.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1] gi|259495640|sp|C4XIJ9|RUVA_DESMR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239797585|dbj|BAH76574.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1] Length = 202 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + + + ++ GV Y + P + L G +LFV T +R+D + Sbjct: 1 MIGYLEGRVVARRDRFAIVLTPGGVGYELELPTPVAAALPAPGGQVSLFVHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S DR+ F L + +G R A+ +LS TA +L+ + +++ + ++PGI K Sbjct: 61 LFGFASLDDRETFRTLIGISKLGPRTALAILSHFTADDLLRVVASGDAEALVRVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI EL K + + + A + ++ L NLGY + +A Sbjct: 121 SAQRIFIELSYKL--------EGRAPAAGLAPSVPIPGGVAGDVVAGLTNLGYPEPEARQ 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 VL+ E ++ D + +R AL+ ++ Sbjct: 173 VAAEVLEAEPDL-DVAAALRQALKRLAS 199 >gi|313633143|gb|EFS00032.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL N1-067] gi|313637717|gb|EFS03086.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL S4-171] Length = 201 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIITTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ V ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYSTRELKKI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ +D I+LALR + Sbjct: 177 IPKLAKEADLTSD--AYIKLALRLM 199 >gi|315174120|gb|EFU18137.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1346] Length = 230 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 86 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEV--MTTSNQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|108799233|ref|YP_639430.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. MCS] gi|119868349|ref|YP_938301.1| Holliday junction DNA helicase motor protein [Mycobacterium sp. KMS] gi|126434891|ref|YP_001070582.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS] gi|123369347|sp|Q1B9R0|RUVA_MYCSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230569|sp|A3PYW4|RUVA_MYCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230570|sp|A1UFA3|RUVA_MYCSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|108769652|gb|ABG08374.1| Holliday junction DNA helicase subunit RuvA [Mycobacterium sp. MCS] gi|119694438|gb|ABL91511.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. KMS] gi|126234691|gb|ABN98091.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS] Length = 196 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTESRLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++A+ L+ A L +++ + + ++PGI + Sbjct: 60 YGFADADARDLFGTLLGVSGVGPKIALATLAVYDAPTLRQALADGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ + V H P + ALV LG+ QA A Sbjct: 120 AERMVLELRDKIGPVTT-----GAGVTAVGGHAVRGP-----VVEALVGLGFAAKQAEEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + + S + R AL + Sbjct: 170 CDKVLAADPDATTSSAL-RAALSML 193 >gi|312863970|ref|ZP_07724207.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis F0396] gi|311100536|gb|EFQ58742.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis F0396] Length = 196 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YII S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + + + + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAELPTETTKTTPSQPEGNHQL-------DEAMEALLALGYKAAEIKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + A Q I+ AL+ + Sbjct: 172 VKAFFEGTNETA--EQYIKSALKML 194 >gi|259046890|ref|ZP_05737291.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC 49175] gi|259036513|gb|EEW37768.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC 49175] Length = 195 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++IDV GV Y + + + V+ +R+D I L Sbjct: 1 MYEYLNGELAHILPTAIVIDVHGVGYQV-VFANPYRLQDSLKKQIKVLVQQVVREDSITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R+ F L SV G+G + AM +L+ V ++ N + + PG+ K Sbjct: 60 YGFISSEERELFQRLISVSGIGPKSAMSILANDDTEGFVNAVESGNVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK +L + + N+ + A AL+ LGY + Sbjct: 120 AQQIILDLKGKFEALPEETTKAVVSTNQ---------ATLEEAKEALLGLGYSAKEIKKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ + + +++A + + Sbjct: 171 WKSLEAAAPS--TTQEALKVAFKLL 193 >gi|327439540|dbj|BAK15905.1| holliday junction resolvasome, DNA-binding subunit [Solibacillus silvestris StLB046] Length = 251 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 3/201 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + +Y++++ QG+ +++Y P ++V +R+D L Sbjct: 46 MYDYLKGQVTRVTPEYIVLEQQGIGWMLYTPNPFAFRTSA--SEQQIYVSLQVREDAQNL 103 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S R+ F L V G+G + A+ +L+ T ++++I +++ + + PG+ K Sbjct: 104 YGFNSLEQRELFKKLIQVSGIGPKGALAILASGNPTSVIQAIEMEDEAFLIRFPGVGKKT 163 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L V+ + + A+ ALV LGY + + Sbjct: 164 ARQMILDLKGKLDMLLDHVELPSAENELPLFGVNPNEHELQEAMLALVALGYSEKELDK- 222 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 + L ++ + I+ A Sbjct: 223 IRPQLSEDDKLTTTDAYIKQA 243 >gi|260578827|ref|ZP_05846734.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC 43734] gi|258603125|gb|EEW16395.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC 43734] Length = 211 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DYV I+ GV Y T++ L + G+ + +R+D L Sbjct: 1 MIASLRGTVIDKGLDYVTIECAGVGYQCSGTATTIAELPR-GEEVFVTTALVVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +++ F LQSV GVGAR+A+ +LS IT EL ++ + K + + PG+ ++ Sbjct: 60 YVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQKAPGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R+ +LKGK L + P + ALV LG+ + + Sbjct: 120 AERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGFTESK 179 Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAI 205 A T + +VL + D S ++R +L AI Sbjct: 180 AGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210 >gi|50842639|ref|YP_055866.1| holliday junction DNA helicase RuvA [Propionibacterium acnes KPA171202] gi|282853888|ref|ZP_06263225.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139] gi|81611698|sp|Q6A8K8|RUVA_PROAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|50840241|gb|AAT82908.1| holliday junction DNA helicase RuvA [Propionibacterium acnes KPA171202] gi|282583341|gb|EFB88721.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139] Length = 201 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G + +V++D GV + CP T + +I +L +R++ + L Sbjct: 1 MISHFSGTVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K Sbjct: 60 YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ ELK K +L+ + + LV LG+ A A Sbjct: 120 AAKMILELKDKVAALAPRGASASGATH-------VAAPWREQVAEGLVGLGWSTKDAEKA 172 Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206 V V LK+ ++R ALR+++ Sbjct: 173 VDKVVALKEADPAMSIGNLMRAALRSLA 200 >gi|57234748|ref|YP_181186.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes 195] gi|90134862|sp|Q3Z9B3|RUVA_DEHE1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57225196|gb|AAW40253.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes 195] Length = 194 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 14/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G++G +F H+R+D + L Sbjct: 1 MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPG+ K Sbjct: 61 FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K + E + + + ++ L LGY +A A Sbjct: 121 ASRIVLELKDKITK------------SWEAGVLIQVTEANSDILATLTALGYSAGEAAKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + S+ ++ + I+LAL Sbjct: 169 IASL--EDITGMPLEERIKLAL 188 >gi|210622015|ref|ZP_03292958.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275] gi|210154460|gb|EEA85466.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275] Length = 200 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG IE + D + ID + Y I T + ++G+ +F + +R+D++ L Sbjct: 1 MYRYIKGTIEEIGFDSITIDNNDIGYSILVSSNTAAQY-QVGEKAKVFTKLIVREDEMFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S+ +R F +L S+ +G +V + +LS T +L I+ ++ I++ PG+ K Sbjct: 60 CGFHSEEERNMFDMLTSISKIGPKVGLSILSFATPKQLGAYILSEDIAKISKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + I ++ AL+ LGY Q +A A Sbjct: 120 AERIILELKDKIDKTQIEFEPTLLEAQPAAISI-------DESVDALIALGYTQAEAKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K +K + +IIR +L + Sbjct: 173 VK---KTKKPGMETEEIIRKSLTYL 194 >gi|254464647|ref|ZP_05078058.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I] gi|206685555|gb|EDZ46037.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I] Length = 229 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +D+VLIDV+GV YI+YC RT++ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRAQDHVLIDVRGVGYIVYCSDRTMAALPGTGEPVALYTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWATVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL---------- 167 A RI+ +LK KA ++ V M E A A AL Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVVDAMDGPGLELVEAADPAPAAKPARKALPKKPSGAAAA 180 Query: 168 --------VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG A AV + AD+ ++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATWPD-ADEPELIRAALRLLA 226 >gi|270307810|ref|YP_003329868.1| Holliday junction DNA helicase [Dehalococcoides sp. VS] gi|270153702|gb|ACZ61540.1| Holliday junction DNA helicase [Dehalococcoides sp. VS] Length = 194 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 14/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G++G +F H+R+D + L Sbjct: 1 MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K + E + + + ++ L LGY +A A Sbjct: 121 ASRIVLELKDKIAK------------SWEAGVLSQVTEANSDILATLTALGYSAGEAAKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + S+ ++ + I+LAL Sbjct: 169 IASL--EDITGLPLEERIKLAL 188 >gi|317128202|ref|YP_004094484.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM 2522] gi|315473150|gb|ADU29753.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM 2522] Length = 204 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + + V ++V V Y+++C I + T++ H+R+D I+L Sbjct: 1 MIESLTGVVSNIEIESVTLNVHDVGYLVFC-ANPFRYEENINEKVTIYTYQHVREDAIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L V G+G + A+ +L+ T +V++I +N K + + PG+ K Sbjct: 60 YGFKNRDERKLFEKLLQVSGIGPKGALAILATGEPTLVVQAIEAENEKFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + + + + A+ AL LGY + Sbjct: 120 ARQIILDLKGKLVDFLQESGGEDTKLIAIDDDMQLENYELEEALEALKALGYVDREINKV 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LK K D I++AL+ + Sbjct: 180 LPK-LKDTKETTDG--YIKIALKLM 201 >gi|218264168|ref|ZP_03478052.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii DSM 18315] gi|218222214|gb|EEC94864.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii DSM 18315] Length = 197 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T + D ++V +R+D L Sbjct: 1 MIEYIKGEIVELTPARMVLECAGIGYELNISLNTYTFYNGKADG-KVYVYEIIREDAHVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F++L +V GVG A +LS ++ +ELV +I ++ + + GI K Sbjct: 60 FGFAGIEERELFLMLTTVPGVGPNTARMILSSLSPSELVRAIADKDENSLVAVKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K ++ + + A LV LG+ + + A Sbjct: 120 AQRILVDLKNKVKAVEGLTTVSTPKTPASNNAVAEEAVAA------LVMLGFQKAASQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK ++A Q+I+ ALR + Sbjct: 174 VHTILKGSPSLA-VEQVIKTALRML 197 >gi|315651980|ref|ZP_07904982.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium saburreum DSM 3986] gi|315485809|gb|EFU76189.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium saburreum DSM 3986] Length = 194 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + V ++ G+ Y I+ R + L K G + + +D L Sbjct: 1 MIAYIRGIVTEKNVNTVTVECSGIGYEIFATGRDIDKLSK-GSEVLIHTYLKISEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L V GVG + A+ +++ + + +L +I+ ++ K I G+ KI Sbjct: 60 YGFLNKDDMVMFKKLIIVNGVGPKAALSIMNTLNSFDLKIAIVTEDYKAICAAVGVGSKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK K + +A S S A+ ALV+LGY +A A Sbjct: 120 AKKIILELKEKVKP---------DDIGTLEAADTSDNSVVSEALEALVSLGYSNSEAYKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + KN I++LAL+ + Sbjct: 171 IKEI--EVKNTDTTEDILKLALKKM 193 >gi|56808549|ref|ZP_00366283.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Streptococcus pyogenes M49 591] Length = 198 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + NK + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPQETGHTKARSNK------AGNTQLDEAIEALLALGYTATE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKLL 195 >gi|329848091|ref|ZP_08263119.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum C19] gi|328843154|gb|EGF92723.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum C19] Length = 201 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + + ++ +++ GV YI+ C IRTL+ + K L +++ R+D RL Sbjct: 1 MIGRLRGPLLEVGDEDAVVEAGGVGYIVRCGIRTLAAMPKPDTEVILHIDSQTREDGTRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +RQ F L VQGVG + A+ VL ++ +L +++ + + + G+ K+ Sbjct: 61 YGFLNKDERQAFQALLGVQGVGPKAALAVLDVLSPGQLAQAVAQDDKASVGRANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGKA++ ++ + +A + +++AL+ LG + QA A Sbjct: 121 ALRIVVELKGKALTSATFEPIALKPAEPVKASVNG------ESVAALIGLGISETQARLA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ A +IR AL+ + Sbjct: 175 VEAAIQTLGADAALPAVIRTALKNL 199 >gi|291301298|ref|YP_003512576.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM 44728] gi|290570518|gb|ADD43483.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM 44728] Length = 200 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + I V GV + TL+ L ++G TL+ +R+D + L Sbjct: 1 MIASLTGTVTHVSTSTATITVGGVGMSVRATPGTLANL-RVGGESTLYTTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F LLQ+ GVG R+A L+ + +I ++ + +IPG+ K Sbjct: 60 YGFEAPDERDLFELLQTASGVGPRLAQAALAVHPPATVRHAIASGDTATLTRIPGVGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +L + + S+ L++LG+ A A Sbjct: 120 AERLVLELKDKIGALPGSMATEPKAGRPV--------SWRDQVQQGLMSLGWSAKDANGA 171 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAISC 207 + + + + D +++ A+R + Sbjct: 172 ITKLDSQVDGEAVDIQGLLKQAIRLLGT 199 >gi|126732347|ref|ZP_01748147.1| Holliday junction DNA helicase motor protein [Sagittula stellata E-37] gi|126707216|gb|EBA06282.1| Holliday junction DNA helicase motor protein [Sagittula stellata E-37] Length = 222 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 121/220 (55%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I ED+VLIDV+GV Y++YC R L+ LG+ G+F L+ + +R+D ++L Sbjct: 1 MIGRIAGQIVYRGEDHVLIDVRGVGYVVYCTDRVLASLGRPGEFAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++WF LL SVQGVGA+ ++ +L + A + ++ L + + GI K Sbjct: 61 FGFPTLVEKEWFRLLMSVQGVGAKASLAILGALGADGVSRALALGDWNAVKAAKGIGPKT 120 Query: 121 ASRIMTELKGKAI-----SLSSVVQQDMSCVNKEQAHI---------CSMPSFAINAISA 166 A R++ ELK KA + + +S E + S A+SA Sbjct: 121 AQRVVNELKDKAPMVMAMGVGASPPPPLSDAPDEVVETAARPPAAPPAPVASAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG +A AV ++ ++ D + +IR AL+ ++ Sbjct: 181 LGNLGYGPGEAAGAVAQAAGEDGSL-DTAGLIRAALKLLA 219 >gi|78357366|ref|YP_388815.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90134880|sp|Q30YX6|RUVA_DESDG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78219771|gb|ABB39120.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 201 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 9/196 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + E ++ GV Y ++ P L+ L + G + ++ T +R+D + Sbjct: 1 MIAYIEGRVAEVTEQSCVVVTQGGVGYEVHLPSHLLARLPEQGAAVSFYIHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +RQ F++L S+ VGA+ A+ VLS +L + + + ++ GI K Sbjct: 61 LYGFSGWDERQTFLVLISISKVGAKTALAVLSLYRPDDLRRIVADDDVTALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I+ ELK K S ++ S +A+ AL NLGY +++A Sbjct: 121 SAQHILLELKYKLKVESLPASAGLAAGVP--------GSVLRDAVQALGNLGYAEEEAAP 172 Query: 180 AVVSVLKKEKNIADDS 195 + ++LK++ ++ Sbjct: 173 VLKNILKQDPDLDVSE 188 >gi|311739557|ref|ZP_07713392.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305373|gb|EFQ81441.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +ID GV Y +TL L + G+ T+ +++D + L Sbjct: 1 MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGGEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + + V+ A + + AL+ LG+ A Sbjct: 120 AQRLALELKDKVAAFAPSEAAAAGSVDTAVAPAGG--AVVESVTEALIGLGFTDKGARPV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S + AD S ++R AL + Sbjct: 178 VESAYADNPD-ADTSSLLRAALAQL 201 >gi|312196177|ref|YP_004016238.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c] gi|311227513|gb|ADP80368.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c] Length = 205 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +++V GV ++ C TL+ L +G+ L +R+ ++ L Sbjct: 1 MIASVAGTVLSVSPTAAVVEVGGVGLLVQCTPATLAGL-AVGEPARLATALVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R + LQ GVG ++A VL + E+ ++ ++ + ++PG+ K Sbjct: 60 YGFADADERDVYETLQGAAGVGPKLAQAVLGVLAPDEVRRAVADEDLAALTRVPGVGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + + P + AL LGY +A A Sbjct: 120 AQRIVLDLKDKLGPPVGGAPARQAAGGRVLPAPRTAPEQVTD---ALGGLGYSTREAEDA 176 Query: 181 VVSVLKKEK-NIADDSQIIRLALRAI 205 V +VL + + D S ++R AL + Sbjct: 177 VAAVLAGDGTDTDDVSAMLRAALAFL 202 >gi|58040113|ref|YP_192077.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H] gi|81351699|sp|Q5FQC5|RUVA_GLUOX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58002527|gb|AAW61421.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H] Length = 200 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + + ++DV GV Y++ RTL+ L + + +ET +R+D I+L Sbjct: 1 MIGQLTGLVGQIEGERCIVDVNGVGYVVSASTRTLAVLPQPPSVARVLIETIVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R WF LL +VQ VGA+VA+ +LS EL+ +I + + + G+ ++ Sbjct: 61 FGFATTDERDWFRLLTTVQSVGAKVALAILSANNPGELLLAINAGDKGSLTRAAGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++EL+ K + I S PS +A+ AL LG+ + +A Sbjct: 121 ADRILSELRNKVAKMPG------GGGTVSAPGIVSGPSVENDALLALAGLGFRRAEAWPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + VL + +N A IRL+L+ ++ Sbjct: 175 LSKVLAENEN-ATLDLAIRLSLKDLA 199 >gi|296129641|ref|YP_003636891.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM 20109] gi|296021456|gb|ADG74692.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM 20109] Length = 202 Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D +++V GV ++ TL+ L ++G L +R+D + L Sbjct: 1 MIASVHGTVLAVRLDSAVLEVGGVGLLVQATPATLAGL-RVGQPGRLSTSLVVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R F +Q+V GVG R+A+ +L+ T L ++ ++ + ++PGI K Sbjct: 60 FGFADDDERDVFETVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDIAALMRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + + + ALV LG+ A A Sbjct: 120 AQRIVLELGERLGAPDPTGG----------TPAAPSADHREQVVEALVGLGWPLRAAQDA 169 Query: 181 VVSVLKKEK---NIADDSQIIRLALRAISC 207 V SVL + ++R ALR + Sbjct: 170 VASVLDGSAVPVGAGEVPGVLRAALRTLGS 199 >gi|325661158|ref|ZP_08149785.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 4_1_37FAA] gi|325472665|gb|EGC75876.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 4_1_37FAA] Length = 200 Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + E+ V+++VQG+ Y I+ P + ++ L IG + ++R+D ++L Sbjct: 1 MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F LL V G+G + + +LS++T +L +++ + K I+ PGI K Sbjct: 61 FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + ++ + + A+ ALV LGYG ++ A Sbjct: 121 AEKLIIELKDKL-----NIDDVLTKEEEVMSVPSGGADMQSEAVQALVALGYGSAESLKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V ++++ +L+ + Sbjct: 176 VKKV--PMTETMTVEELLKQSLKFM 198 >gi|269126344|ref|YP_003299714.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM 43183] gi|268311302|gb|ACY97676.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM 43183] Length = 202 Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D+ ++DV GV + C TL+ L ++G+ T+ +R+D + L Sbjct: 1 MIAFVSGKVAAAGPDHAVVDVGGVGLTLQCTPATLAGL-RVGEQVTVPTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R F LLQ+ GVG R+A+ +L+ + L ++ + + ++PGI K Sbjct: 60 FGFADDDERAVFELLQTASGVGPRLALAMLAVHSPNALRRAVAAGDVAALTKVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + S + + + L+NLG+ +A A Sbjct: 120 AQRIVLELKDRLGAPSGEEEAAAPA-------PARAEPWRTQVQTGLINLGWSAREAEAA 172 Query: 181 VVSVLK--KEKNIADDSQIIRLALRAIS 206 V +V + S +++ ALR +S Sbjct: 173 VEAVAAELDGGPLPPVSALLKSALRKLS 200 >gi|227503511|ref|ZP_03933560.1| Holliday junction DNA helicase motor protein [Corynebacterium accolens ATCC 49725] gi|227076014|gb|EEI13977.1| Holliday junction DNA helicase motor protein [Corynebacterium accolens ATCC 49725] Length = 202 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y +TL L + G+ + +++D + L Sbjct: 1 MIAALRGEVLHIGLDHGVIECGGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + D + + AL+ LG+ + A Sbjct: 120 AQRLTLELKDKVKRFAGTPVPDAAPEATGAGG-----PVVDSVTEALLGLGFTEKAARPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + AD S ++R AL + Sbjct: 175 VEAAYAEAP-AADTSTLLRAALAQL 198 >gi|150390102|ref|YP_001320151.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens QYMF] gi|167012654|sp|A6TQM4|RUVA_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149949964|gb|ABR48492.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens QYMF] Length = 194 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I D ++++V G+ Y I I + S + KIG TLF +R+D+ L Sbjct: 1 MFEYMKGMIVEAQIDKIIVEVNGIGYRINSSINSASQV-KIGQVSTLFTHFVLREDEAHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + F L SV +G +VA G+LS T L I+ +++ IA+ PG+ K Sbjct: 60 YGFVDKEELAMFKKLISVSKIGPKVAAGILSTYTPQRLGAYIVSNDAQAIAKSPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K D S V +Q + AL+ LGY + + A Sbjct: 120 AERMILELKDKI---------DDSQVEYDQNFFNHENKNNNEVVDALMALGYTKHEGEQA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V ++IR AL ++ Sbjct: 171 ASAVR---DTSLSTEEMIRKALNWLA 193 >gi|257417484|ref|ZP_05594478.1| holliday junction DNA helicase RuvA [Enterococcus faecalis AR01/DG] gi|257159312|gb|EEU89272.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ARO1/DG] Length = 204 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 1 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 60 FGFGSLDEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201 >gi|228935741|ref|ZP_04098554.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823979|gb|EEM69798.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 197 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + P + K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPSVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|37522453|ref|NP_925830.1| Holliday junction DNA helicase RuvA [Gloeobacter violaceus PCC 7421] gi|44888383|sp|Q7NCU2|RUVA_GLOVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|35213454|dbj|BAC90825.1| holliday junction DNA helicase [Gloeobacter violaceus PCC 7421] Length = 206 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI ++G + + + +DV GV Y ++ RT+ L +IG+ LF +R+D Sbjct: 1 MITFVRGMLAEVGPRSGQSWATVDVGGVGYRVWTHARTVGKLPRIGEEVKLFTLMIVRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 ++LFGFL +R+ F L SV G+G R+ + +L + TELV++I+ N++ +A PG+ Sbjct: 61 AMQLFGFLEPGERELFGQLVSVSGIGPRMGLALLETLAPTELVQAILQGNTRALALAPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R+ EL+ + + AL+ LG+ + Sbjct: 121 GAKTAQRLALELRSRLSKWREE-------SGLSAMGARASSRVYEEVELALLALGFAPGE 173 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ +V +R A+ +S Sbjct: 174 VVRALDAVAPAMAGEEQTEAWLRAAIAWLS 203 >gi|300362258|ref|ZP_07058434.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus gasseri JV-V03] gi|300353249|gb|EFJ69121.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus gasseri JV-V03] Length = 192 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV++DV G+ Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSTVAADLSPSLQDAVLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD I+ AL + Sbjct: 167 TPKLAKLPENTADG--YIKEALALL 189 >gi|55820159|ref|YP_138601.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus LMG 18311] gi|55822047|ref|YP_140488.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus CNRZ1066] gi|81559960|sp|Q5M1Y4|RUVA_STRT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81561136|sp|Q5M6H5|RUVA_STRT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|55736144|gb|AAV59786.1| Holliday junction DNA helicase, subunit A [Streptococcus thermophilus LMG 18311] gi|55738032|gb|AAV61673.1| Holliday junction DNA helicase, subunit A [Streptococcus thermophilus CNRZ1066] Length = 196 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKHIVIETNGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + + + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAELPAETTNTTANQTAGNQQL-------DEAMEALLALGYKSTE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + A Q I+ AL+ + Sbjct: 172 VKAFFEDTNETA--EQYIKSALKML 194 >gi|256375826|ref|YP_003099486.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827] gi|255920129|gb|ACU35640.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827] Length = 198 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +++V GV + + TL L + G+ L +R+D + L Sbjct: 1 MISSLRGQVLSIGLDHAVVEVGGVGFAVQATPATLGSL-RRGEEAVLSTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF RQ F LLQ+V G+G R+A+ L+ + +L ++ + V+ Q+PGI K Sbjct: 60 FGFADADSRQLFGLLQTVSGIGPRLALATLAVLEPEKLRAALAEGSVSVLTQVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L++ D + ++ + AL+ LG+ QA TA Sbjct: 120 AERLVIELRDKVGQLATAPASD---------GVVAVGRVRDQVVEALLGLGFPAKQAETA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL ++ ++ S ++R AL + Sbjct: 171 VDGVLAEDPSLG-TSVVLRKALSGL 194 >gi|300741595|ref|ZP_07071616.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567] gi|300380780|gb|EFJ77342.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567] Length = 206 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G++ + + ++DV G ++ RTLS L + G TL +R+D + L Sbjct: 1 MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TATE+ ++ + K ++PGI K Sbjct: 60 YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S E+ ++ + AL +LG+ + A A Sbjct: 120 ARRIVLELAGKLI---------LSEGQAEENAPAQGIAWKPQVMDALTSLGWSEKDADAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA-ISC 207 + + ++ + ++ + ALR ++ Sbjct: 171 IDAYVQHNPDAEKEAVGV--ALRGVLAS 196 >gi|29374722|ref|NP_813874.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583] gi|255974579|ref|ZP_05425165.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2] gi|256956955|ref|ZP_05561126.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5] gi|256964042|ref|ZP_05568213.1| holliday junction DNA helicase RuvA [Enterococcus faecalis HIP11704] gi|257078631|ref|ZP_05572992.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1] gi|257084064|ref|ZP_05578425.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1] gi|257087893|ref|ZP_05582254.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6] gi|257418785|ref|ZP_05595779.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11] gi|294780021|ref|ZP_06745400.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1] gi|300862283|ref|ZP_07108363.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD Ef11] gi|44888456|sp|Q839T6|RUVA_ENTFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29342180|gb|AAO79946.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583] gi|255967451|gb|EET98073.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2] gi|256947451|gb|EEU64083.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5] gi|256954538|gb|EEU71170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis HIP11704] gi|256986661|gb|EEU73963.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1] gi|256992094|gb|EEU79396.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1] gi|256995923|gb|EEU83225.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6] gi|257160613|gb|EEU90573.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11] gi|294452915|gb|EFG21338.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1] gi|300848808|gb|EFK76565.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD Ef11] Length = 204 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 1 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 60 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201 >gi|228476722|ref|ZP_04061391.1| holliday junction DNA helicase RuvA [Streptococcus salivarius SK126] gi|228251671|gb|EEK10768.1| holliday junction DNA helicase RuvA [Streptococcus salivarius SK126] Length = 196 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + + + + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAELPTETTKTTPSQPEGNHQL-------DEAMEALLALGYKAAE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 172 IKAFFEGTNETA--EQYIKSALKML 194 >gi|56697949|ref|YP_168319.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3] gi|81349137|sp|Q5LNT7|RUVA_SILPO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56679686|gb|AAV96352.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3] Length = 224 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+YC RTL+ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRSTDHVLIDVRGVGYIVYCSDRTLAALPGVGEVVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S +++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 FGFMSLAEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWASVKSAKGVGPKT 120 Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNK-------------EQAHICSMPSFAINAI 164 A RI+ +LK KA ++ V Q M + + A + A+ Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVAQAMEGAVEVVEVIEPAAPAPRKAAPPGGAGAATAGAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGYG A AV + + +IR ALR ++ Sbjct: 181 SALSNLGYGPSDAAAAVAQAAAEAPEAGET-DLIRAALRLLA 221 >gi|94987628|ref|YP_595561.1| Holliday junction DNA helicase RuvA [Lawsonia intracellularis PHE/MN1-00] gi|123262079|sp|Q1MP37|RUVA_LAWIP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94731877|emb|CAJ55240.1| Holliday junction resolvasome, DNA-binding subunit [Lawsonia intracellularis PHE/MN1-00] Length = 199 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G I E ++ G+ Y ++ T S L G+ ++ +R+D Sbjct: 1 MIAYLEGYIAEFGETSCVVATSSGIGYEVFLTTPTRSTLPNKGEQVRFYICHIVREDIQE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F++L S+ VGAR A+ +LS +L + +I ++ + ++ GI K Sbjct: 61 LFGFETWDERQTFIVLTSISKVGARTALNMLSTFRPNDLRQCVIEEDIFALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K + + + S + ++ L LGY +++++ Sbjct: 121 TAQHIFLELKYKLQIDGNSTTSSSPSIGQ---------SLFYDILTGLQGLGYTKEESSV 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + SVL+ E ++ D +R L+ + Sbjct: 172 VIKSVLQHEPDL-DVGSALRRCLKQL 196 >gi|116627021|ref|YP_819640.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus LMD-9] gi|122268374|sp|Q03MX8|RUVA_STRTD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116100298|gb|ABJ65444.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus thermophilus LMD-9] gi|312277481|gb|ADQ62138.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus thermophilus ND03] Length = 196 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKHIVIETNGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + + + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAELPAETTNTTANQTAGNQQL-------DEAMEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + A Q I+ AL+ + Sbjct: 172 VKAFFEDTNETA--EQYIKSALKML 194 >gi|62147831|emb|CAH63577.1| putative holliday junction DNA helicase RuvA [Chlamydophila abortus S26/3] Length = 222 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 16 MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 75 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 76 LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 135 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q ++ + PS I AL LGY + A Sbjct: 136 TAEKLMVDLKQKLADLLPLDAQILASWEP------AKPSCMEEGIQALAALGYPKSSAER 189 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 190 MIAEAMSELPDHASVAEILPIALKK 214 >gi|116629085|ref|YP_814257.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus gasseri ATCC 33323] gi|238853828|ref|ZP_04644193.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4] gi|311111127|ref|ZP_07712524.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22] gi|122273917|sp|Q045Q3|RUVA_LACGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116094667|gb|ABJ59819.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus gasseri ATCC 33323] gi|238833523|gb|EEQ25795.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4] gi|311066281|gb|EFQ46621.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22] Length = 192 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV++DV G+ Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ A + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSAVATDLTPSLQDALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD I+ AL + Sbjct: 167 TPKLAKLPENTADG--YIKEALALL 189 >gi|306836241|ref|ZP_07469223.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium accolens ATCC 49726] gi|304567833|gb|EFM43416.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium accolens ATCC 49726] Length = 202 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y +TL L + G+ + +++D + L Sbjct: 1 MIAALRGEVLHIGLDHGVIECSGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + D + + AL+ LG+ + A Sbjct: 120 AQRLTLELKDKVKRFAGTPAPDAAPEATGAGG-----PVVDSVTEALLGLGFTEKAARPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + E AD S ++R AL + Sbjct: 175 VEA-AYAEAPAADTSTLLRAALAQL 198 >gi|222153876|ref|YP_002563053.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J] gi|254767391|sp|B9DW68|RUVA_STRU0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222114689|emb|CAR43773.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J] Length = 197 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGQLTKITAKYIVVEANGLGYIIYV-ANPYSFSDSVNQTLTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVAAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK +++ Q +Q AI AL+ LGY + Sbjct: 120 AQQMILDLSGKFVTIPEGGQA-------QQMPKAKGNQQLDEAIEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + A Q I+ AL+ + Sbjct: 172 IRAFFEGTDDTA--EQYIKSALKML 194 >gi|326382127|ref|ZP_08203819.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL B-59395] gi|326198857|gb|EGD56039.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL B-59395] Length = 201 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 12/204 (5%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + D+ +++ GV Y + TL L K G L +R+D + L+ Sbjct: 6 IASVSGEVIDIALDHAVVECAGVGYKVLATPPTLGSL-KRGGHVRLLTSMMVREDSMTLY 64 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF R F LLQ+V GVG R+AM L+ + L ++ ++K + +PGI ++A Sbjct: 65 GFTDPEARDLFGLLQTVTGVGPRLAMATLAVLEPDSLRRALAESDAKALTTVPGIGKRVA 124 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ EL+ K + ALV LG+ + A AV Sbjct: 125 ERLVVELRDKV----------TAGSAGAVPGAPVAAGAGAQVTEALVGLGFTEGAAQKAV 174 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +VL + AD S ++R AL A+ Sbjct: 175 AAVLADDPG-ADSSSLLRSALTAL 197 >gi|163738342|ref|ZP_02145757.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis BS107] gi|161388263|gb|EDQ12617.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis BS107] Length = 229 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 30/231 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV YI+YC RT++ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-------------- 166 A RI+ +LK KA + ++ ++ + + + A Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTIADAMDGPGLDVVESVAP----VEAGKTPRKAPPKAPSG 176 Query: 167 -----------LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG A AV + A+++++IR ALR ++ Sbjct: 177 AAAASAGALSALGNLGYGPSDAAAAVAEAAATYPD-ANEAELIRAALRLLA 226 >gi|22538230|ref|NP_689081.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 2603V/R] gi|25012088|ref|NP_736483.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae NEM316] gi|76799561|ref|ZP_00781690.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 18RS21] gi|77414038|ref|ZP_00790209.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515] gi|44888490|sp|Q8DWW6|RUVA_STRA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|44888493|sp|Q8E2R7|RUVA_STRA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|22535142|gb|AAN00954.1|AE014286_17 Holliday junction DNA helicase RuvA [Streptococcus agalactiae 2603V/R] gi|24413632|emb|CAD47709.1| Unknown [Streptococcus agalactiae NEM316] gi|76585090|gb|EAO61719.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 18RS21] gi|77159920|gb|EAO71060.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515] Length = 196 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ G+ Y+IY S G + T+++ +R D L Sbjct: 1 MYDYIKGKLSKITAKFIVVETAGLGYMIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + S +++ +++ A+ AL+ LGY + Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNL-------EEAMEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + E Q I+ +L+ + Sbjct: 172 VKAFF--EGTNETVEQYIKSSLKML 194 >gi|258648476|ref|ZP_05735945.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC 51259] gi|260851236|gb|EEX71105.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC 51259] Length = 197 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++ GV Y + + T + + + L+V +R+D L Sbjct: 1 MIDYIKGQIGELTPTSCTLETCGVGYELLISLNTYTAIQDRKE-AKLYVYEVIREDAYLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LL SV GVG + A +LS + EL I ++N K++ + GI K Sbjct: 60 YGFSTKQERQLFTLLISVSGVGGQTAKVILSSFSPGELANIIQMENVKLLRGVKGIGPKA 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + ++ A + A+SAL LG+ + Sbjct: 120 AQRIVLDLKDKVVGIEG------GTTVQQGAANAVNANAVAEAVSALTTLGFPPAASQKC 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++L++ N+ QII+ AL+ + Sbjct: 174 VAALLQENPNLP-IEQIIKQALKLL 197 >gi|256618467|ref|ZP_05475313.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 4200] gi|256761914|ref|ZP_05502494.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3] gi|256960754|ref|ZP_05564925.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96] gi|257081405|ref|ZP_05575766.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol] gi|257088548|ref|ZP_05582909.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188] gi|256597994|gb|EEU17170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 4200] gi|256683165|gb|EEU22860.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3] gi|256951250|gb|EEU67882.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96] gi|256989435|gb|EEU76737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol] gi|256997360|gb|EEU83880.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188] Length = 204 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 1 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 60 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEV--VTTSNQALAEALEALSALGYSDREIKR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201 >gi|188994697|ref|YP_001928949.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis ATCC 33277] gi|229560115|sp|B2RJ07|RUVA_PORG3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188594377|dbj|BAG33352.1| probable Holliday junction DNA helicase RuvA [Porphyromonas gingivalis ATCC 33277] Length = 202 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I GL ++I+ GV Y + + T S + +++ +R+D L Sbjct: 1 MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAY-QGKKEGLIWITQLIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG A +LS EL I + + + GI +K Sbjct: 60 YGFSTKEERTLFGQLTSVSGVGPTTARLILSSYAPQELAALITTGQADALKAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LKGK L + + +S + + AISAL LG+ A Sbjct: 120 AQRIIVDLKGKI-QLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+L ++ ++A II+ ALR + Sbjct: 179 VKSILSEDSSLA-VEDIIKRALRML 202 >gi|116670849|ref|YP_831782.1| Holliday junction DNA helicase RuvA [Arthrobacter sp. FB24] gi|166230514|sp|A0JXB2|RUVA_ARTS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116610958|gb|ABK03682.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter sp. FB24] Length = 214 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +ID+ G + +TLS L + G+ LF +R+D + L Sbjct: 1 MISFLRGTVAHVGLSSAVIDLNGAGMSVNATPQTLSGL-RTGEEGKLFTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R+ F +L SV GVG R+A+ VL+ + + + K ++PGI K+ Sbjct: 60 FGFSSDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDGKAFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + + + ++A+ +LG+ + AT++ Sbjct: 120 AGRIVLELAGKLVPHG--------TGAAAAPAAAASAPWKPQVVAAMTSLGWSEKDATSS 171 Query: 181 VVSVLKKEKNIAD---DSQIIRLALRAI 205 + L + ++I+R LR + Sbjct: 172 IDKALSDSPELEAGGQVAEILRATLRWL 199 >gi|331085084|ref|ZP_08334171.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408784|gb|EGG88249.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 200 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + E+ V+++VQG+ Y I+ P + ++ L IG + ++R+D ++L Sbjct: 1 MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F LL V G+G + + +LS++T +L +++ + K I+ PGI K Sbjct: 61 FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + ++ + + A+ ALV LGYG ++ A Sbjct: 121 AEKLIIELKDKL-----NIDDVLTKEEEVMSVPSGGADMQSEAVQALVALGYGSAESLKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V ++++ +L+ + Sbjct: 176 VKKV--PMTKTMTVEELLKQSLKFM 198 >gi|291456789|ref|ZP_06596179.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM 20213] gi|291382066|gb|EFE89584.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM 20213] Length = 208 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y + LS L G ++ ++ QD + L Sbjct: 1 MIGMLTGRVESVEADTALIDVGGVGYEVRMSATDLSRL-HTGTEARVYTYMNLSQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL ++ F+ L V G+G +VA +LS +TA +L +I ++ +A+ PG+ K Sbjct: 60 HGFLDQASKKTFLQLIKVSGIGPKVAQSLLSTLTAGQLARAIADNDAAALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S + Q + + I L++LG+ Q A A Sbjct: 120 AQKIILELKG-----SIDLSQIEGASPSGAKVQAQVDTSMEQVIEGLISLGWRQQDAQQA 174 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + + D +++RLAL + Sbjct: 175 VAEACEDNDIPTPLDTDDVPRVLRLALALM 204 >gi|302541121|ref|ZP_07293463.1| Holliday junction DNA helicase RuvA [Streptomyces hygroscopicus ATCC 53653] gi|302458739|gb|EFL21832.1| Holliday junction DNA helicase RuvA [Streptomyces himastatinicus ATCC 53653] Length = 206 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 15/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L + +I+V GV + C TLS L +IG+ L +R+D + L Sbjct: 1 MIAFVSGPVAALAPNTAVIEVGGVGMALQCTPGTLSGL-RIGEAARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHAPDALRLAVSTGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + A + ++ +ALV LGY +A A Sbjct: 120 AQKLLLELKDRL--------GEPVGTTVPAARPPAAAGWSDQLHTALVGLGYATREADEA 171 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + E + +Q++R AL+ ++ Sbjct: 172 VSAVTPQAEAALAEGGMPQVAQLLRAALQTLN 203 >gi|189218506|ref|YP_001939147.1| Holliday junction resolvasome, DNA-binding subunit [Methylacidiphilum infernorum V4] gi|189185364|gb|ACD82549.1| Holliday junction resolvasome, DNA-binding subunit [Methylacidiphilum infernorum V4] Length = 211 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 100/208 (48%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +++++V+G+ + ++C + L + TL+ + ++++ L Sbjct: 12 MISYLKGTLIYSLFPHIIVEVRGIGFEVFCSLSLFRNLPPLYSELTLYTHLEVSENRLEL 71 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGF ++ F LL V GVG R A+ +L+ + +EL ++ + +++++I GI K Sbjct: 72 FGFKDLEEQLTFRLLVEKVHGVGPRTALSILNVLPPSELKAAVGRADFRLLSKIKGIGEK 131 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK + + + V +A+ ALV LGY + +A Sbjct: 132 TAHRLVVELKDSWATAEASSSSGTAIVGDR---------VFEDALRALVALGYKEPEALK 182 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 + V +K D II+ L+ ++ Sbjct: 183 RLRRVREKHPQ-MDLEGIIKECLK-LAS 208 >gi|15618530|ref|NP_224816.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae CWL029] gi|15836152|ref|NP_300676.1| Holliday junction DNA helicase motor protein [Chlamydophila pneumoniae J138] gi|16752420|ref|NP_444679.1| Holliday junction DNA helicase motor protein [Chlamydophila pneumoniae AR39] gi|33241977|ref|NP_876918.1| Holliday junction DNA helicase motor protein [Chlamydophila pneumoniae TW-183] gi|6685955|sp|Q9Z7T4|RUVA_CHLPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|4376917|gb|AAD18759.1| Holliday Junction Helicase [Chlamydophila pneumoniae CWL029] gi|7189062|gb|AAF38010.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae AR39] gi|8978992|dbj|BAA98827.1| holliday junction helicase [Chlamydophila pneumoniae J138] gi|33236487|gb|AAP98575.1| RuvA [Chlamydophila pneumoniae TW-183] gi|269302404|gb|ACZ32504.1| holliday junction DNA helicase RuvA [Chlamydophila pneumoniae LPCoLN] Length = 207 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59 M I+G + ++ ++I+ QG+ Y I R + C+ + +F R+ + Sbjct: 1 MYDYIRGTLTYVHTGAIVIECQGIGYHIAITERWAIECIRALHQDFLVFTHVIFRETEHL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F +L S G+G ++A+ +L+ + L + ++ + +A + GI K Sbjct: 61 LYGFHSREERECFRILISFSGIGPKLALAILNALPLKVLCSVVRSEDIRALASVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M ELK K L + + E + + S I AL LGY + A Sbjct: 121 TAEKLMVELKQKLPDLLPLDSR------VETSQTHTTSSCLEEGIQALAALGYSKIAAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K + + I+ +AL+ Sbjct: 175 MIAEAIKDLPEGSSLTDILPIALKK 199 >gi|329116352|ref|ZP_08245069.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD 2020] gi|326906757|gb|EGE53671.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD 2020] Length = 197 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGQLTKITAKYIVVEANGLGYIIYV-ANPYSFSDSVNQQVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEEEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +D + +K A AI AL+ LGY + Sbjct: 120 AQQMILDLAGKFVE----APKDSAPTSKANA---GGNLQLDEAIEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 172 IRAFFEGTDETA--EQYIKSALKML 194 >gi|332523205|ref|ZP_08399457.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str. Jelinkova 176] gi|332314469|gb|EGJ27454.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str. Jelinkova 176] Length = 197 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG ++ + Y++++ G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGKLKKITAKYIVVEANGLGYIIYV-ANPYSFTDSVNQNVTIYLHQVIREDAHIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVRAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + S QQ + AI AL+ LGY + Sbjct: 120 AQQMILDLAGKFVDSSEPSQQQSQAKRNSNQQL-------DEAIEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+LAL+ + Sbjct: 172 IRAFFEGTDETA--EQYIKLALKML 194 >gi|313847675|emb|CBY16663.1| putative holliday junction DNA helicase RuvA [Chlamydophila psittaci RD1] Length = 222 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++++ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 16 MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 75 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 76 LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 135 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q + + PS I AL LGY + A Sbjct: 136 TAEKLMVDLKQKLADLLPLDSQITASWGP------AKPSCMEEGIQALAALGYPKSSAER 189 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 190 MIAEAMSELPDHASIAEILPIALKK 214 >gi|323489997|ref|ZP_08095218.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus donghaensis MPA1U2] gi|323396293|gb|EGA89118.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus donghaensis MPA1U2] Length = 198 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++I+ QG+ + I+ P S + +F+ H+R+D L Sbjct: 1 MYDYIKGTVTRVTPEYLVIEQQGIGWQIFAP-NPYSF---GTEDLQVFLHHHVREDAQLL 56 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + R+ F L SV G+G + A+ +L+ ++E+I +N + + PG+ K Sbjct: 57 FGFPTFEQRELFRKLISVSGIGPKGALAILASGQPQHVIEAIEQENESYLVKFPGVGKKT 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK D V + + A+ AL LGY + + Sbjct: 117 ARQMILDLKGKLTEFFG----DSLGVEDTSNLLSNDQLELEEAMLALGALGYSEREINK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ D ++ AL+ + Sbjct: 172 VKPQLRDLD--LDTEGFMKKALQLL 194 >gi|239939964|ref|ZP_04691901.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL 15998] gi|239986448|ref|ZP_04707112.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL 11379] gi|291443395|ref|ZP_06582785.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces roseosporus NRRL 15998] gi|291346342|gb|EFE73246.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces roseosporus NRRL 15998] Length = 208 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGKEARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFRDDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + ++ + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGEPVG------AHIGQQGIGTPVTAGWRDQLQAALIGLGYATREADEA 173 Query: 181 VV------SVLKKEKNIADDSQIIRLALRAIS 206 V E Q++R AL+ ++ Sbjct: 174 VNAVAPQAEAAAAEGTAPPVPQLLRAALQTLN 205 >gi|322377268|ref|ZP_08051760.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334] gi|321281981|gb|EFX58989.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334] Length = 197 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITRITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNINYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAV------QTSAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|291165807|gb|EFE27855.1| holliday junction DNA helicase RuvA [Filifactor alocis ATCC 35896] Length = 198 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G IE L D +L+ GV Y I T+ K L+ + +R+D I L Sbjct: 1 MIGLLYGEIEELSLDSILLVCSGVGYEIQVSQNTMEH-CKQHSNIRLYTKMIVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +++ F L SV +G +V + +LS ++ I+ N + ++++ G+ K Sbjct: 60 IGFFEKSEKELFEQLTSVSKIGPKVGLSILSTYQVDQIKSYIVTANIEKLSKVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K N + +AI ALV+LG+ ++++ A Sbjct: 120 AERIVLELKDKISHFE--------IDNDAIEIASPINQTEDDAIEALVSLGFSKNESYDA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V K++ ++I LAL +S Sbjct: 172 VQEV-KQQYTAQSLDELIPLALSKLS 196 >gi|328950866|ref|YP_004368201.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus hydrothermalis DSM 14884] gi|328451190|gb|AEB12091.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus hydrothermalis DSM 14884] Length = 201 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 13/204 (6%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + ED +I G+ + ++CP TL L + G+ L +R+D L+ Sbjct: 10 IRFLQGRLVDKREDRAVILTGGIGFEVWCPTPTLETL-REGEEVALHTRLVVREDGFTLY 68 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + + F LL SV GVG RVA+G+L+ + + L ++ ++K + PG+ ++A Sbjct: 69 GFHDPVYLELFDLLTSVSGVGPRVALGMLAALPPSLLGRAVAEGDAKALTAAPGVGKRLA 128 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI+ EL+ K + + A AI AL LG+ + Q T V Sbjct: 129 ERIVLELRHKIPAHLTA-----------GGGAHRANPNAHEAIEALAALGFREAQVRTVV 177 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 ++ ++ A ++IR ALR + Sbjct: 178 GTLAAQDPE-APVEELIRRALRQL 200 >gi|261417028|ref|YP_003250711.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373484|gb|ACX76229.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 202 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + +V+++ GV Y + T L + G L +R+D + L Sbjct: 1 MIERIRGVLVQKSPTFVVVECAGVGYGVNISAFTAGKLPEEGAEVILHTNLVVREDSMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ F++L V GVG ++A +LS T +L+ I N + +I G+ K Sbjct: 61 FGFADTTEKNLFLMLLEVNGVGPKLAQRILSGSTPADLLNMIASDNKSALGKIKGLGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ++ LK KA S+++Q + ++ + A+ AL LG A A Sbjct: 121 CEQMTLTLKEKA---SNMLQALGDVEGSGITSVGALTGAKLEAVLALHTLGVKDPAAEKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VV ++ + AD + +I AL+ + Sbjct: 178 VVKAVEVLGDGADAAALIPEALKYL 202 >gi|76787979|ref|YP_330625.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909] gi|77405120|ref|ZP_00782219.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B] gi|77410868|ref|ZP_00787225.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae CJB111] gi|90135931|sp|Q3JYM8|RUVA_STRA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76563036|gb|ABA45620.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909] gi|77163086|gb|EAO74040.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae CJB111] gi|77176263|gb|EAO79033.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B] gi|319745991|gb|EFV98273.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus agalactiae ATCC 13813] Length = 196 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ G+ Y+IY S G + T+++ +R D L Sbjct: 1 MYDYIKGKLSKITAKFIVVETAGLGYVIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + S +++ +++ A+ AL+ LGY + Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNL-------EEAMEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + E Q I+ +L+ + Sbjct: 172 VKAFF--EGTNETVEQYIKSSLKML 194 >gi|77408136|ref|ZP_00784882.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1] gi|77173236|gb|EAO76359.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1] Length = 196 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ G+ Y+IY S G + T+++ +R D L Sbjct: 1 MYDYIKGKLSKITAKFIVVETAGLGYVIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + S +++ +++ A+ AL+ LGY + Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQNSNL-------EEAMEALLALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + E Q I+ +L+ + Sbjct: 172 VKAFF--EGTNDTVEQYIKSSLKML 194 >gi|255971607|ref|ZP_05422193.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1] gi|257421400|ref|ZP_05598390.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98] gi|255962625|gb|EET95101.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1] gi|257163224|gb|EEU93184.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98] gi|323479298|gb|ADX78737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis 62] Length = 204 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 1 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 60 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTVTEV--VTTSNQALAEALEALSALGYSDREIKR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201 >gi|260102901|ref|ZP_05753138.1| crossover junction endoribonuclease subunit A [Lactobacillus helveticus DSM 20075] gi|260083290|gb|EEW67410.1| crossover junction endoribonuclease subunit A [Lactobacillus helveticus DSM 20075] Length = 196 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + Y+++DV GV Y +Y P GD +F+E +R I L Sbjct: 1 MYEYFEGIVTVITPSYIVVDVNGVGYKVYSPTPFAYQ---KGDKAKIFIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ D++ F+ L SV G+G + A+ +++ A L E+I K + + PG+ K Sbjct: 58 YGFQSEDDKELFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK ++ ++++ ++P +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLRDY-------VARLDRQDEEQGNIPPALNDALLALIALGYTQKELDRI 170 Query: 181 VVSVLKKEKNIAD 193 + + + AD Sbjct: 171 TPKLEEVNADTAD 183 >gi|119383447|ref|YP_914503.1| Holliday junction DNA helicase motor protein [Paracoccus denitrificans PD1222] gi|166230580|sp|A1AZW3|RUVA_PARDP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119373214|gb|ABL68807.1| Holliday junction DNA helicase RuvA [Paracoccus denitrificans PD1222] Length = 223 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 16/221 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I +D+VLIDV+GV YI++ RT + L G L+ E +R+D ++L Sbjct: 1 MIGRIAGVILHRAQDHVLIDVRGVGYIVHVSERTAANLPPAGQATALYTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+++W LL SVQGVGA+VA+ +L + L ++ L + + + PG+ K+ Sbjct: 61 FGFPTLLEKEWHRLLTSVQGVGAKVALAILGTLGPDGLSRALALGDWSALRKAPGVGPKL 120 Query: 121 ASRIMTELKGKAI---SLSSVVQQDMSCVNKEQ------------AHICSMPSFAINAIS 165 A R++ ELK KA +L + D + + + S +A+S Sbjct: 121 AQRVVMELKDKAPAVMALGGALTVDPGPLPEVELVEAAVPAPVPAKAAPSSAQATADALS 180 Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AL NLGY + V+ + A + +IR ALR ++ Sbjct: 181 ALGNLGYAPS-EAASAVAEAAAREPAAPTAALIRAALRLLA 220 >gi|229597664|pdb|2ZTC|A Chain A, Mtruva Form Ii gi|229597665|pdb|2ZTC|B Chain B, Mtruva Form Ii gi|229597666|pdb|2ZTC|C Chain C, Mtruva Form Ii gi|229597667|pdb|2ZTC|D Chain D, Mtruva Form Ii gi|229597668|pdb|2ZTD|A Chain A, Mtruva Form Iii gi|229597669|pdb|2ZTD|B Chain B, Mtruva Form Iii gi|229597670|pdb|2ZTE|A Chain A, Mtruva Form Iv Length = 212 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 17 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 75 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L + + N + ++PGI + Sbjct: 76 YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 135 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K A + + + ALV LG+ QA A Sbjct: 136 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 184 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +VL + S + R AL + Sbjct: 185 TDTVLAANHDATTSSAL-RSALSLL 208 >gi|254511523|ref|ZP_05123590.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium KLH11] gi|221535234|gb|EEE38222.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium KLH11] Length = 225 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 18/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV Y++YC RT++ L +G+ +++ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRAADHVLIDVRGVGYLVYCSDRTMAALPGVGEAVSIYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++++W LL SVQGVGA+V++ +LS + + +I L + + G+ K Sbjct: 61 YGFLSLVEKEWHRLLCSVQGVGAKVSLAILSALGPDGVSRAIALGDWGAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-----------------INA 163 A RI+ +LK KA + ++ ++ + + A A Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPPLEVVELAEPAPAPKRGAQPASGAAAASAGA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A +AV + A ++ +IR AL+ ++ Sbjct: 181 LSALANLGYGPSDAASAVAEAAASLPD-AGEADLIRAALKLLA 222 >gi|309799338|ref|ZP_07693581.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302] gi|308117005|gb|EFO54438.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302] Length = 197 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGRVNQEAQIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + K A S A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLP------TKTAAPSSSDNQELEEAMEAMLALGYKAAE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + +D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|154487345|ref|ZP_02028752.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis L2-32] gi|154083863|gb|EDN82908.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis L2-32] Length = 205 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G++E + +I+V GV Y + P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASMHA-GQEIKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG +I LS + + E A + L++LG+ Q A A Sbjct: 120 AQKIILELKG-SIDLSQIEGSSATASTPEDTG-------AEQVVEGLMSLGWHQQDAAHA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V +V + N D ++++LAL ++ Sbjct: 172 VQTVCADNQIETPLNAEDVPRVLKLALTSL 201 >gi|156741100|ref|YP_001431229.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM 13941] gi|189045765|sp|A7NIB1|RUVA_ROSCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|156232428|gb|ABU57211.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM 13941] Length = 197 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ G+ ++IY P + L+ G IG LF +R+D + L Sbjct: 1 MIASVRGTLIAVAADHVVIETGGIGWMIYAPRQVLAAPGDIGAEMRLFTCLIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + RQ F L SV GVG + A+ +LS T EL +I + +A+ P I K+ Sbjct: 61 YGFKTVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVARLARTPRIGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK D+ + ++ + LV+LG+ +A+TA Sbjct: 121 AERLVLELKGKL---------DIKGLPVAPGVSPAVAAVNAELSEMLVSLGFSSAEASTA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + ++ D + +RLALR Sbjct: 172 IAALPPDAP--LDLEERLRLALRYFGA 196 >gi|103485830|ref|YP_615391.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis RB2256] gi|123380148|sp|Q1GWB4|RUVA_SPHAL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|98975907|gb|ABF52058.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis RB2256] Length = 199 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ + +IDV GV Y++ RTL LG +G T+ E + +D +RL Sbjct: 1 MIAKLTGRLDSNGAGHAVIDVGGVGYLVEASARTLDALGAVGGEVTIHTEMLVGEDFLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL SVQGVGA+VA+ +LS + +L ++ +S +IA+ G+ K+ Sbjct: 61 LGFARAEERDWFRLLTSVQGVGAKVALAILSALEVADLQRALASGDSAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK KA +L + + + + +AI+AL LG+ +A+ A Sbjct: 121 AQRITHELKDKAGALGGISGSGPA--------LSAAAGPVGDAIAALTGLGFKPGEASAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + ++ A ++R+AL+ Sbjct: 173 VAAANEELGADASLDALVRVALKK 196 >gi|322388581|ref|ZP_08062181.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus infantis ATCC 700779] gi|321140501|gb|EFX36006.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus infantis ATCC 700779] Length = 197 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + K A S A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPA------KTAAPSSSDNQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + +D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|254474829|ref|ZP_05088215.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp. R11] gi|214029072|gb|EEB69907.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp. R11] Length = 229 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV YI+YC RT++ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSERTMAALPGVGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------------------- 161 A RI+ +LK KA + ++ ++ + Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVADAMDGPGLDVVEPADPVEPAKKPRKAPPKKPSGAAAA 180 Query: 162 --NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+SAL NLGYG A AV A+++++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPE-ANEAELIRAALRLLA 226 >gi|254431586|ref|ZP_05045289.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001] gi|197626039|gb|EDY38598.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001] Length = 214 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 6/211 (2%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G+I ++ +L+ +GV Y + R L G L + +R+D Sbjct: 1 MIGWLQGDIADPWQHDKRCGLLLLCRGVGYEVQVSQRDWRRLPPPGSPLALHIHQSIRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R F L +V GVG ++AMG+L + ELV++I+ + + + Q PG+ Sbjct: 61 AWTLYGFTARQERDLFRDLVAVSGVGPQMAMGLLGALEMEELVQAIVQPDLRRLCQAPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ + + + + EQ + S + LV+LG+ + Sbjct: 121 GKRTAERLAVELRVRLQERYLGAVETAAEADPEQLPGLADGS-RDDICGTLVSLGFADLE 179 Query: 177 ATTAVVSVLKKE-KNIADDSQIIRLALRAIS 206 A+ +V + A IR LR +S Sbjct: 180 IHRALRAVASQGLTAEASTEDWIRDCLRWLS 210 >gi|306822725|ref|ZP_07456103.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium dentium ATCC 27679] gi|304554270|gb|EFM42179.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium dentium ATCC 27679] Length = 205 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + LI+V GV Y I P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASMHA-GQEVKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A +I+ ELKG D+S + + I + L++LG+ Q A Sbjct: 120 AQKIILELKG---------SIDLSQIETAASVISRPEDTGSEQVVEGLISLGWRQQDALH 170 Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205 AV V + + D ++++LAL ++ Sbjct: 171 AVQEVCRSNDIATPLSNEDVPRVLKLALTSL 201 >gi|34540592|ref|NP_905071.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83] gi|44888375|sp|Q7MW36|RUVA_PORGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34396905|gb|AAQ65970.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83] Length = 202 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I GL ++I+ GV Y + + T S + +++ +R+D L Sbjct: 1 MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAY-QGKKEGLIWITQLIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG A +LS EL I + + + GI +K Sbjct: 60 YGFSTKEERTLFGQLTSVSGVGPTTAQLILSSYAPQELAALITTGQADALKAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LKGK L + + +S + + AISAL LG+ A Sbjct: 120 AQRIIVDLKGKI-QLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+L ++ ++A II+ ALR + Sbjct: 179 VKSILSEDSSLA-VEDIIKRALRML 202 >gi|225021302|ref|ZP_03710494.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii ATCC 33806] gi|224946035|gb|EEG27244.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii ATCC 33806] Length = 198 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + +I+ GV Y + TL L + G + + +R++ L Sbjct: 1 MIVSLRGTVIDITAHHAVIECAGVGYQVLATPSTLGHLTR-GAETFILITMIVREESQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL R F+ LQ+V G+G ++A+ S T EL +I ++K + +IPG+ ++ Sbjct: 60 YGFLDAATRDMFVTLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + V + AL +LG+ + A Sbjct: 120 AERMVVDLKDKVATYATPETPTPAAV--------PHIDTYEQVLEALASLGFAEKTAEPV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +VL + + + + R +L + Sbjct: 172 LTTVLAADPTLTTPAAL-RASLNLL 195 >gi|51473576|ref|YP_067333.1| Holliday junction DNA helicase motor protein [Rickettsia typhi str. Wilmington] gi|81390134|sp|Q68WZ1|RUVA_RICTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|51459888|gb|AAU03851.1| Holliday junction DNA helicase RuvA [Rickettsia typhi str. Wilmington] Length = 200 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 76/203 (37%), Positives = 123/203 (60%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DYV+IDV GV Y++Y TL+ L + G F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKIDSQCDDYVIIDVNGVGYLVYASGTTLAKLVE-GRFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G ++A+ +LS +T T++ +I + + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIKIAINNDDKNIFKAISGVGDKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RIM ELKGK + S S + K+ ++I S+ I ALVNLG+ + +A Sbjct: 120 TERIMLELKGKIAKIFS-----SSAIIKDSSNISSVE--INEVIKALVNLGFTRFEAQNT 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I+ D ++I+ AL+ Sbjct: 173 VQGIITQNTKISID-ELIKTALK 194 >gi|255348878|ref|ZP_05380885.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70] gi|255503418|ref|ZP_05381808.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70s] gi|255507096|ref|ZP_05382735.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis D(s)2923] gi|289525546|emb|CBJ15024.1| holliday junction DNA helicase [Chlamydia trachomatis Sweden2] gi|296435106|gb|ADH17284.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/150] gi|296438826|gb|ADH20979.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/11023] Length = 200 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHIDESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRDERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + + + + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|227888712|ref|ZP_04006517.1| crossover junction endoribonuclease subunit A [Lactobacillus johnsonii ATCC 33200] gi|227850739|gb|EEJ60825.1| crossover junction endoribonuclease subunit A [Lactobacillus johnsonii ATCC 33200] Length = 192 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + +Y Y+++DV GV Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVTKIYPAYIVLDVNGVGYKILCPTPYSY---DENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ A + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSAAAADLTPSLQDALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD ++ AL + Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189 >gi|305681259|ref|ZP_07404066.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii ATCC 14266] gi|305659464|gb|EFM48964.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii ATCC 14266] Length = 198 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + +I+ GV Y + TL L + G + + +R++ L Sbjct: 1 MIVSLRGTVIDITAHHAVIECAGVGYQVLATPTTLGHLTR-GAETFILITMIVREESQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL R F LQ+V G+G ++A+ S T EL +I ++K + +IPG+ ++ Sbjct: 60 YGFLDAATRDMFATLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + V + AL +LG+ + A Sbjct: 120 AERMVVDLKDKVATYAAPETPTTAAV--------PHTDTYEQVLEALASLGFAEKTAEPV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +VL + + + + R +L + Sbjct: 172 LTTVLAADPTLTTPAAL-RASLNLL 195 >gi|119025822|ref|YP_909667.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium adolescentis ATCC 15703] gi|166230520|sp|A1A1K2|RUVA_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118765406|dbj|BAF39585.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium adolescentis ATCC 15703] Length = 205 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G++E + +I+V GV Y + P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASMHA-GQEIKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG +I LS + + E A + L++LG+ Q A A Sbjct: 120 AQKIILELKG-SIDLSQIEGSSATASTPEDTG-------AEQVVEGLMSLGWHQQDAAHA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V +V + N D ++++LAL ++ Sbjct: 172 VQTVCADNQIETPLNAKDVPRVLKLALTSL 201 >gi|312865841|ref|ZP_07726063.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415] gi|311098716|gb|EFQ56938.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415] Length = 196 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y++++ G+ Y++ S ++ +++ +R+D L Sbjct: 1 MYDYLKGILTKITAKYIVVEAGGLGYMVNV-ANPYSFSDQMNQDIQIYLHYVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 YGFHNEEEKAVFLNLISVSGIGPTTALAIVAVDDNEGLVAAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + K S A+ AL LGY + Sbjct: 120 AQQMVLDLAGKFVEVPQ-------ADGKTSPQAQSTNQNLNEAMEALQALGYKASE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + A I+ AL+ + Sbjct: 172 VRVFFEGTDETA--ENYIKSALKML 194 >gi|293400498|ref|ZP_06644643.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305524|gb|EFE46768.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 194 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I D ++ID G+ Y +Y L TLF H+R+D I L Sbjct: 1 MIAFIRGTIHSYSNDSLIIDNNGIGYRVYIANPQAVRL---NTEVTLFTYQHVREDAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + F+ L SV+GVG + A+G+L+ A ++ +I + K + +PGI K Sbjct: 58 FGFTSMEEHDLFLQLISVKGVGPKTALGMLAVCPAKNMIMAIENNDVKTLKGLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LK K + + ++ + ++AI AL LGY + ++ Sbjct: 118 ASQIVLDLKNKLVEEVTEIE-------------AKENAQLLDAIEALKALGYKNAEISS- 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L + Q IR AL ++ Sbjct: 164 VKKELMAMEESTTSDQYIRKALSILA 189 >gi|294010085|ref|YP_003543545.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium japonicum UT26S] gi|292673415|dbj|BAI94933.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium japonicum UT26S] Length = 202 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 71/204 (34%), Positives = 107/204 (52%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y++ RTL+ LG +G+ T+ E + D IRL Sbjct: 1 MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSDDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG+RVA+ +LS + EL ++ + +IA+ G+ K+ Sbjct: 61 VGFARAEERDWFRLLTGVQGVGSRVALAILSALEPVELHRAVAAGDKAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + + + +AISAL NLG+ +A+ A Sbjct: 121 AQRIANELKDKIGA-----APMPAGAVGAGFAALPTGGHSADAISALQNLGFKPAEASIA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + ++ A ++RLALR Sbjct: 176 VAAAEEELGEDASLDALVRLALRK 199 >gi|219669644|ref|YP_002460079.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense DCB-2] gi|219539904|gb|ACL21643.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense DCB-2] Length = 198 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 108/203 (53%), Gaps = 8/203 (3%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 ++G + + D +++DVQGV Y + P L G L+ +R+D++ L+GF Sbjct: 2 LRGKVWEIQADKLILDVQGVGYQLSIPYGLLGK-AHPGHELILYTHVILREDELALYGFS 60 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S +++ F+L+ SV G+G + A+ +LS + + +I +N ++ ++PGI K A R+ Sbjct: 61 SAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKTAQRL 120 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + ELK K + ++ E A +F A+ L+ LG+ Q++A A+ ++ Sbjct: 121 ILELKEKFKG------RAIALEGIEGAGSLPQAAFHSEAMETLLALGFSQEEAKKALQAL 174 Query: 185 LKKEKNIADDSQIIRLALRAISC 207 + ++ + Q +RLALR+++ Sbjct: 175 PDSAQALSTEEQ-VRLALRSLAA 196 >gi|317472815|ref|ZP_07932126.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA] gi|316899734|gb|EFV21737.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA] Length = 198 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +++ G+ Y I P G IG ++ H+R+D I L Sbjct: 1 MISYIKGILVSMTPGGAVVENNGIGYDIMMPAG-QEFPGGIGQEVRIYTHMHVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F LL V G+G +V + VLS ++ EL +++ +SK I++ PG+ K Sbjct: 60 FGFRTKEELEAFELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ EL+ K + M A + LV+LGY + +A A Sbjct: 120 AKKLILELRDKLDFEEFEQAEPMDFAGDLPAEDSVAVTA-----QGLVSLGYSRSEAMMA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + Q+++ AL + Sbjct: 175 IKKV--ENAAEYSPEQLLKKALTKL 197 >gi|307708034|ref|ZP_07644503.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC 12261] gi|307615924|gb|EFN95128.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC 12261] Length = 197 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDFPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|297243469|ref|ZP_06927401.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis AMD] gi|296888514|gb|EFH27254.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis AMD] Length = 209 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 10/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LI V GV Y Y P + LS L + G ++ + QD + L Sbjct: 1 MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ +Q V G+G +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG SL + D S + Q++ + S I L++LG+ Q A A Sbjct: 120 AQKIILELKG---SLDPSILADSSN-DSTQSNKQIVDSSVQCVIEGLISLGWRQVDAQRA 175 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V V + + AD ++R+AL ++ Sbjct: 176 VEQVCAENNISTPISDADLPNVLRMALASL 205 >gi|297616928|ref|YP_003702087.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus DSM 12680] gi|297144765|gb|ADI01522.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus DSM 12680] Length = 201 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D V +DV GV + + P R L+ + IG L+ +++ R+ Sbjct: 1 MIAFLRGILVDTGTDCVYLDVNGVGFEVTVPPRVLNRVTCIGQEVFLYTYLQTLENEFRI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +RQ F L S+ G+GA+ +G++S +T EL +++ Q+ K + +PGI K Sbjct: 61 YGFLDEDERQLFRTLLSIPGLGAKTCLGIVSSMTTEELYRAVLAQDEKSLTSVPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + ++ S + ISAL LG+ + Sbjct: 121 AQRLIFELQNKWPKTDLIA----------TTASENLRSSWTDTISALETLGFKSSELIPI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + + K + + +R LR Sbjct: 171 LSQLQAKNELGEAVEENVRKVLR 193 >gi|42518563|ref|NP_964493.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC 533] gi|81668203|sp|Q74KV9|RUVA_LACJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|41582848|gb|AAS08459.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC 533] gi|329666839|gb|AEB92787.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii DPC 6026] Length = 192 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y+++DV GV Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSY---DENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSTAAADLTPSLQDALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD ++ AL + Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189 >gi|110635507|ref|YP_675715.1| Holliday junction DNA helicase motor protein [Mesorhizobium sp. BNC1] gi|123161737|sp|Q11DH5|RUVA_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110286491|gb|ABG64550.1| Holliday junction DNA helicase subunit RuvA [Chelativorans sp. BNC1] Length = 206 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 90/207 (43%), Positives = 135/207 (65%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ ++DV GV Y+ +C R+LS LG +G TLF+ET++R+D IRL Sbjct: 1 MIGKLKGVLDEIGEDHCVVDVGGVGYVAHCSARSLSTLGSVGTPVTLFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF + L+R+WF LLQ +VQGVGA+VA+ VLS +T +EL +I L++ +A+ PG+ K Sbjct: 61 YGFRTVLEREWFRLLQNNVQGVGAKVALSVLSTLTPSELANAIALRDIATVARAPGVGRK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + K+ P+ +A+SAL NLGY +D A Sbjct: 121 VAERIVTELKSKAPAFAGEAAGAIGL--KQDLGEGVAPAPVSDAVSALANLGYSRDIAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD +IRL L+ ++ Sbjct: 179 AVAAALKSAGEGADTGTLIRLGLKELA 205 >gi|161501897|ref|YP_219549.2| Holliday junction DNA helicase motor protein [Chlamydophila abortus S26/3] gi|90134722|sp|Q5L6Z3|RUVA_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 207 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 1 MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 61 LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q ++ + PS I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLADLLPLDAQILASWEP------AKPSCMEEGIQALAALGYPKSSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 175 MIAEAMSELPDHASVAEILPIALKK 199 >gi|78187612|ref|YP_375655.1| Holliday junction DNA helicase RuvA [Chlorobium luteolum DSM 273] gi|123743607|sp|Q3B219|RUVA_PELLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78167514|gb|ABB24612.1| Holliday junction DNA helicase subunit RuvA [Chlorobium luteolum DSM 273] Length = 200 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + + +++V G+ Y T L + G+ L+ +R+D ++L Sbjct: 1 MYAYFRGRVVSVLPEEAVLEVSGIAYRFLISTGTSRSLPQAGNEAILYTHLSVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++Q F LL V GVG ++A+ VLS + E+ E+I+ + + + G+ K Sbjct: 61 YGFSSEEEKQLFRLLLLVSGVGPKLALAVLSGLPVAEVHEAILANAPERLFGVTGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + LS +A +AL+ LG+ + A A Sbjct: 121 AARIILELRDRILKLSPPGA-------AATPAGAVQCGIREDATNALLTLGFSRTAAQQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL+ +++ AL A+ Sbjct: 174 VAGVLEANPGG-SVEDVVKSALLAM 197 >gi|225869418|ref|YP_002745366.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus] gi|259495656|sp|C0MGC2|RUVA_STRS7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225702694|emb|CAX00805.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus] Length = 198 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDIKYLMRFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ +K A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKPPKAKQQGNEQLDEAVEALLALGYKATE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKML 195 >gi|317057206|ref|YP_004105673.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7] gi|315449475|gb|ADU23039.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7] Length = 199 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y TL + TL+ +R++ + L Sbjct: 1 MIYSVRGKLIHTESELAVVECSGVGYACKTTFYTLQKIAGE-SEVTLYTYLAVRENDVDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F +L +V GVG + A+ +LS T ++ ++ + K + + GI K Sbjct: 60 FGFSSQEELRCFKMLITVSGVGPKAALSILSSNTPSQFALTVATGDFKSLTKSKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++ + + A AI+ALV LGY + +A A Sbjct: 120 AQRIVLELKDKIAKENTISVRGGETI----ASAVPRGGALDEAITALVVLGYSEGEAAQA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + A ++I+ AL ++ Sbjct: 176 LAGA----EPTATVEELIKTALVRLA 197 >gi|87302215|ref|ZP_01085040.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 5701] gi|87283140|gb|EAQ75096.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 5701] Length = 221 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 11/217 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G++ ++ +L+ GV Y + R L G L+ +R D Sbjct: 1 MIGWLQGHVAEPWQQGNRCGLLLACAGVGYEVQLTRRHWELLPPAGSPLCLYTHQSIRDD 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF + +R F LL +V GVG ++A+ +L + ELV +I+ + + + + PG+ Sbjct: 61 GWTLFGFGARHERDLFRLLVAVSGVGPQMALALLGTMPCEELVRAIVQADLRRLCRAPGV 120 Query: 117 SMKIASRIMTELKGKAIS------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 + A R+ EL+GK + S L L Sbjct: 121 GKRTAERLAVELRGKLAESFGAAAAAGDDDLLDGVAGSTDGDPGPAASTREELQLTLTAL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIA-DDSQIIRLALRAIS 206 GY + + A+ ++ ++ + A D + LR ++ Sbjct: 181 GYEPLEISRALRALGREGLDPAHDADAWLSACLRWLA 217 >gi|270291966|ref|ZP_06198181.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143] gi|270279494|gb|EFA25336.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143] Length = 197 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHVS-NPYAYSGQVNQETQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|320334037|ref|YP_004170748.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus maricopensis DSM 21211] gi|319755326|gb|ADV67083.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus maricopensis DSM 21211] Length = 200 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 9/204 (4%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + + +I GV Y + CP TL+ L ++ D L +R+D L+ Sbjct: 5 IAYLTGTVRDVRDTSAVIVAGGVGYEVLCPAPTLAKL-RVNDTAELHTRMVVREDAWTLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + F LL SV GVG ++ + +LS + + I+ +SK++A + G+ K A Sbjct: 64 GFQDQDSIRLFDLLTSVTGVGPKLGLALLSAMPPHVIAGGILGSDSKLLASVSGVGKKTA 123 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ EL+ K + ++ + + +A+ AL+ LG+ + Q + Sbjct: 124 ERLVLELQNKVP-------EHLAAASGRTTAPVVNSTVGQDAVEALLALGFREAQVRAVI 176 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +L + N A Q+IR +L + Sbjct: 177 SELLSADPN-ATADQLIRKSLGRL 199 >gi|89898693|ref|YP_515803.1| Holliday junction DNA helicase RuvA [Chlamydophila felis Fe/C-56] gi|123749524|sp|Q252Y0|RUVA_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89332065|dbj|BAE81658.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56] Length = 207 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I R L L + ++ T +R+ + Sbjct: 1 MYDYIRGILTYMSSGTMVIECQGLGFSICASDRWLMELAGLLHREVIVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F +L S GVG + + +L+ ++L ++ K +A +PGI K Sbjct: 61 LYGFRSRGERECFRMLISFSGVGPKTGLAILNTFALSKLCSIARAEDVKALASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q ++ + PS + I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLPELLPLDSQTLTSWKP------AKPSCMEDGIQALAALGYPKSSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 175 MIAEAITELPDNASLAEILPIALKK 199 >gi|213966124|ref|ZP_03394311.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum SK46] gi|213951222|gb|EEB62617.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum SK46] Length = 206 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L DY +I+ GV +++ R S L + + + +R+D I L Sbjct: 1 MIASLRGEVIDLGADYCVIECGGVGHLVTITGRLASQLVR-HEQTFMLTTMAVREDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F LL++V VG +VAM VLS ++ E+ ++ +N+K + G+ ++ Sbjct: 60 FGFANSQEREMFALLRTVSTVGPKVAMSVLSVLSPAEIANAVASKNAKALQAANGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + A + + + ALV LG+ + A A Sbjct: 120 AERLLVELKDKVEVFADRAVSQPEEAASGAAPGIVLKADLDQVVGALVGLGFPEADANEA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V++ + + D ++ AL+ + Sbjct: 180 AETVVRIDPTL-DTPMALKAALKTL 203 >gi|298252762|ref|ZP_06976556.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis 5-1] gi|297533126|gb|EFH72010.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis 5-1] Length = 209 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 10/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LI V GV Y Y P + LS L + G ++ + QD + L Sbjct: 1 MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ +Q V G+G +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG SL S + D S + Q++ + S I LV+LG+ Q A A Sbjct: 120 AQKIILELKG---SLDSSILADSSN-DSTQSNKQIVDSSVQCVIEGLVSLGWRQVDAQRA 175 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V V + + AD ++R+AL ++ Sbjct: 176 VEQVCAENNISIPISDADLPNVLRMALASL 205 >gi|281355312|ref|ZP_06241806.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC BAA-548] gi|281318192|gb|EFB02212.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC BAA-548] Length = 203 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + +IDV GV Y P+ T L + G+ L + T +R+D I L Sbjct: 1 MIARLTGILAESSFSGCIIDVGGVGYEALIPLSTFDKLPQPGNKVELHIFTQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L +V G+G ++A+ VLS + + +I + K +++I G+ + Sbjct: 61 FGFATPEEKKLFQQLINVSGIGGKIALSVLSSMPVSGFCSAIASGDIKSLSRISGVGKRT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L SV + + EQ + + A A+ LG+ +D Sbjct: 121 AERMVVELRDK---LGSVAGGSVFVPDAEQGGELTAAAEAALAL---EQLGFKRDAIDKV 174 Query: 181 VVSVLKKEK-NIADDSQIIRLALRAIS 206 + ++L + + +++R + ++ Sbjct: 175 LKTLLAELPKSEHTTDKLLRQGIIKLN 201 >gi|288923988|ref|ZP_06418058.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f] gi|288344666|gb|EFC79125.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f] Length = 217 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 11/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G +E L ++DV GV +++C TL+ L ++G+ L +R+ ++ L Sbjct: 1 MIASISGTVEALSPTSAVVDVGGVGILVWCTPATLARL-RVGERAKLSTTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F +LQ GVG R+A VL + + ++ ++ + ++PGI K Sbjct: 60 YGFADADERDVFEILQGAAGVGPRLAQAVLGVHSPDAVRRAVAAEDLAALTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ K S+ V V A ALV LGY +A A Sbjct: 120 AQRIVLDLRDKIGPPSAPVPAPRGAVAAAAVAELRPGGPAEQVRDALVGLGYSAREAQDA 179 Query: 181 VVSVLK----------KEKNIADDSQIIRLAL 202 VV+ + D + ++R +L Sbjct: 180 VVAAGVAAGADAGVTGDAGDAVDPAALLRASL 211 >gi|154149661|ref|YP_001403279.1| Holliday junction DNA helicase RuvA [Candidatus Methanoregula boonei 6A8] gi|153998213|gb|ABS54636.1| Holliday junction DNA helicase RuvA [Methanoregula boonei 6A8] Length = 201 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +V++DV G+ Y ++ P + + G L +R+D I L Sbjct: 1 MIAYLEGTPAATGDRWVVLDVNGIGYRVHVPEPEVREIAGAGTKVKLHTYMAVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + + F ++ V G+G ++A+ +LS+I+ + V +I+ + K + +I GI K Sbjct: 61 YGFLHESELELFTVIIGVSGIGPQIALNILSQISLEDFVLAILSGDEKSLTRISGIGPKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + + +A SALV+LG+ + + A Sbjct: 121 AKRLILELRDKMKKVQDAMTHTPAG---------RQDATLRDAASALVSLGFAEAASYDA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S + +I++ ALR + Sbjct: 172 VASAARGLA-APTVQEIVKAALRLL 195 >gi|325678965|ref|ZP_08158563.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8] gi|324109469|gb|EGC03687.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8] Length = 199 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y TL + L+ +R++ + L Sbjct: 1 MIYSVRGKLIHTDGEMAVVECGGVGYACKTTFYTLQKIAGE-SEVMLYTYLAVRENDVDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F +L +V GVG + A+ +LS + ++ ++ + K + + GI K Sbjct: 60 FGFSTTEELRCFKMLITVSGVGPKAALSILSSNSPSQFALTVATGDHKSLTKCKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++ + V + M A++AL+ LGY + +A A Sbjct: 120 AQRIVLELKDKIAKENTISVRGGDTV----SAAPVMGGALQEAVTALIVLGYSEGEAAQA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + A ++I+ AL A++ Sbjct: 176 LAGA----DPNATVEELIKKALIALA 197 >gi|328955749|ref|YP_004373082.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium glomerans PW2] gi|328456073|gb|AEB07267.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium glomerans PW2] Length = 206 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + LIDV GV Y + T L + G LF +RQD + L Sbjct: 1 MISQLHGTLVDSSPTSALIDVAGVGYELGISGVTAQALPQPGSDVMLFTRLQVRQDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L +V +GAR+A+ LS T +++ + +++ +A++PG+ K Sbjct: 61 FGFATREERAMFDRLIAVSSIGARLALATLSTFTVSQIRVIVAQEDAARMAEVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK D S + A S S +A +AL+++G+ + A Sbjct: 121 AQRLILELKSTLEKGDLPGCADAS--RESGAMSPSAGSAVDDARAALLSMGFSPQEVAVA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + ++ +E+ + ++ ALR + Sbjct: 179 LETLGDEEREMR-VESVLAGALRRLGS 204 >gi|15605230|ref|NP_220016.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis D/UW-3/CX] gi|6685940|sp|O84509|RUVA_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3328938|gb|AAC68102.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX] gi|296436962|gb|ADH19132.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11222] gi|297748631|gb|ADI51177.1| RuvA [Chlamydia trachomatis D-EC] gi|297749511|gb|ADI52189.1| RuvA [Chlamydia trachomatis D-LC] Length = 200 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + + + + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|289425381|ref|ZP_06427158.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187] gi|289428316|ref|ZP_06430003.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165] gi|295130717|ref|YP_003581380.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137] gi|289154359|gb|EFD03047.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187] gi|289158465|gb|EFD06681.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165] gi|291375923|gb|ADD99777.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137] gi|332675562|gb|AEE72378.1| holliday junction ATP-dependent DNA helicase RuvA [Propionibacterium acnes 266] Length = 201 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G + +V++D GV + CP T + +I +L +R++ + L Sbjct: 1 MISHFSGMVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K Sbjct: 60 YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ ELK K +L+ + + + LV LG+ A A Sbjct: 120 AAKMILELKDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKA 172 Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206 V V LK+ ++R ALR+++ Sbjct: 173 VDKVAALKEADPAMTIGNLMRAALRSLA 200 >gi|315612298|ref|ZP_07887212.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis ATCC 49296] gi|315315691|gb|EFU63729.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis ATCC 49296] Length = 197 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 100/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDTHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAV------QTSAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|322517658|ref|ZP_08070523.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus vestibularis ATCC 49124] gi|322123735|gb|EFX95320.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus vestibularis ATCC 49124] Length = 196 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YII S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + + + + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAELPTETTKTTPSQPEGNHQL-------DEAMEALLALGYKAAE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A Q I+ AL+ + Sbjct: 172 IKVFFEGTNETA--EQYIKSALKML 194 >gi|261337766|ref|ZP_05965650.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM 20093] gi|270277219|gb|EFA23073.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM 20093] Length = 212 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 7/212 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LIDV GV Y + L+ L +G T+F + QD I L Sbjct: 1 MIGMLSGQVAAVDTAAALIDVHGVGYEVRMAGADLATL-HVGQDATVFTSMSVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL ++ F+ LQ V G+G +VA+ +L + A +L +I ++ +A+ PG+ K Sbjct: 60 FGFLDHAAKRMFLQLQKVSGIGPKVALSLLGTLDAGQLAHAIYDGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG ++ L+++ S + + ++ + AL++LG+ Q A A Sbjct: 120 AQKIILELKG-SLDLAALDDASGSDTSVAASAHAPEDRGRLDVVEALISLGWRQQDAQHA 178 Query: 181 VVSVLKKE----KNIAD-DSQIIRLALRAISC 207 V SV+ ++ AD +++R AL ++ Sbjct: 179 VDSVIHEQDLPTPLAADMVPEVLRAALTSLDS 210 >gi|283853683|ref|ZP_06370914.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B] gi|283570924|gb|EFC18953.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B] Length = 201 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + E + ++ GV Y + P + L G LFV T +R+D + Sbjct: 1 MIGYVEGRVLARRERWAIVLTPGGVGYELELPDPVAAALPPQGGQVCLFVHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + DR+ F L + +G R A+ +LSR T +L+ + ++ + ++PGI K Sbjct: 61 LFGFATLDDRETFRTLIGITKLGPRTALAILSRFTTEDLLRIVATGDADALVRVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI EL K V + + I+ L NLGY A+ Sbjct: 121 SAQRIFIELTYKLEGKGPVSAGPHPAIGG---------GVLADVIAGLTNLGYPDADASR 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 +VL+ E ++ D +Q +R AL+ ++ Sbjct: 172 VAGAVLEAEPDL-DVAQALRQALKRLAS 198 >gi|254391315|ref|ZP_05006519.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces clavuligerus ATCC 27064] gi|197705006|gb|EDY50818.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces clavuligerus ATCC 27064] Length = 253 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L ++ V GV ++C TL+ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + + + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + + S++ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRL-------GEPTGVPGARRGAAAAPASWSDQLHAALIGLGYAGREADEA 172 Query: 181 VVSVLKKEKNIADDSQ---IIRLALR 203 V +V + Q +++ AL+ Sbjct: 173 VAAVTPQAAAAGAAPQVGVLLKAALQ 198 >gi|23010264|ref|ZP_00051013.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Magnetospirillum magnetotacticum MS-1] Length = 182 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGLVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+GVLS + L +I + IA+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPEALATAIATGDKGAIARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 A+R++ ELK KA + + + ++ + P +AISA Sbjct: 121 AARLVAELKDKAPAFAPIDPALVALTGAVEDRTA--PQPVADAISA 164 >gi|295102071|emb|CBK99616.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium prausnitzii L2-6] Length = 203 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V+I GV Y CP L +G+ T++ ++ ++ + L Sbjct: 1 MIYSLTGKIIKKTLNAVVICCGGVGYYAQCPASVAGALPGVGNEATIYTVMNVTENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F LL SV GVGA+V + +LS + + +I + K G+ K+ Sbjct: 61 YGFASEEQQACFELLTSVSGVGAKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K D+ V + + + LV+LGY Q +A A Sbjct: 121 AQRIVLELKDKVAK-GFAAGIDLENVAGAASDTAAAQGAGQAIAA-LVSLGYSQSEAALA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +II+LALR+++ Sbjct: 179 VSKIDGTLP----VEEIIKLALRSMA 200 >gi|322392518|ref|ZP_08065978.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus peroris ATCC 700780] gi|321144510|gb|EFX39911.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus peroris ATCC 700780] Length = 197 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKRLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + K A S A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPA------KTAAPSSSDNQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|295695626|ref|YP_003588864.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912] gi|295411228|gb|ADG05720.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912] Length = 198 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 107/206 (51%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I G+ D+V++DVQGV Y +Y + L G L + R+D L Sbjct: 1 MIAFLRGKIAGVNPDHVVMDVQGVGYKVYVAPSLAATL-HPGQEAVLHTQLVWREDGPTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R +F+L+Q+V G+G +VA+GV++ + +++ ++ + + G+ K Sbjct: 60 YGFADPRERDFFVLVQTVPGIGPKVALGVVAA-GIDRVSRAVVEEDMAFLRGLSGVGRKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ + L D + +E + + M + ++AL LGY + + + Sbjct: 119 ADRLVVDLRDRLSGLVP----DAAGPEREGSGVRPM----EDVVAALSALGYNEREIQSI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + ++ K + ++IRLAL ++ Sbjct: 171 MPVLRREWKEGREPEEMIRLALSQLA 196 >gi|15609730|ref|NP_217109.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis H37Rv] gi|15842133|ref|NP_337170.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CDC1551] gi|31793777|ref|NP_856270.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis AF2122/97] gi|121638478|ref|YP_978702.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662432|ref|YP_001283955.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis H37Ra] gi|148823788|ref|YP_001288542.1| Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis F11] gi|167967067|ref|ZP_02549344.1| Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis H37Ra] gi|215404543|ref|ZP_03416724.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 02_1987] gi|215412369|ref|ZP_03421129.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 94_M4241A] gi|215431548|ref|ZP_03429467.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis EAS054] gi|215446844|ref|ZP_03433596.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T85] gi|218754331|ref|ZP_03533127.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis GM 1503] gi|219558597|ref|ZP_03537673.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T17] gi|224990972|ref|YP_002645659.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798325|ref|YP_003031326.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 1435] gi|254232711|ref|ZP_04926038.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C] gi|254365262|ref|ZP_04981307.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis str. Haarlem] gi|254551644|ref|ZP_05142091.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187606|ref|ZP_05765080.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CPHL_A] gi|260201721|ref|ZP_05769212.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T46] gi|260205915|ref|ZP_05773406.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis K85] gi|289444132|ref|ZP_06433876.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T46] gi|289448243|ref|ZP_06437987.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CPHL_A] gi|289553618|ref|ZP_06442828.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 605] gi|289570764|ref|ZP_06450991.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T17] gi|289575303|ref|ZP_06455530.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis K85] gi|289746386|ref|ZP_06505764.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis 02_1987] gi|289754712|ref|ZP_06514090.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis EAS054] gi|289758724|ref|ZP_06518102.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis T85] gi|289762766|ref|ZP_06522144.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM 1503] gi|294994298|ref|ZP_06799989.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 210] gi|297635203|ref|ZP_06952983.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN 4207] gi|297732196|ref|ZP_06961314.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN R506] gi|298526068|ref|ZP_07013477.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 94_M4241A] gi|306776867|ref|ZP_07415204.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu001] gi|306780631|ref|ZP_07418968.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu002] gi|306785395|ref|ZP_07423717.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu003] gi|306789995|ref|ZP_07428317.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu004] gi|306794076|ref|ZP_07432378.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu005] gi|306798490|ref|ZP_07436792.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu006] gi|306804353|ref|ZP_07441021.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu008] gi|306807607|ref|ZP_07444275.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu007] gi|306969809|ref|ZP_07482470.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu009] gi|306972982|ref|ZP_07485643.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu010] gi|307080692|ref|ZP_07489862.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu011] gi|307085281|ref|ZP_07494394.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu012] gi|313659531|ref|ZP_07816411.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN V2475] gi|54039572|sp|P66745|RUVA_MYCBO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042201|sp|P66744|RUVA_MYCTU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230567|sp|A1KLU1|RUVA_MYCBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230571|sp|A5U5U3|RUVA_MYCTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767377|sp|C1AF62|RUVA_MYCBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114794219|pdb|2H5X|A Chain A, Ruva From Mycobacterium Tuberculosis gi|114794220|pdb|2H5X|B Chain B, Ruva From Mycobacterium Tuberculosis gi|114794221|pdb|2H5X|C Chain C, Ruva From Mycobacterium Tuberculosis gi|114794222|pdb|2H5X|D Chain D, Ruva From Mycobacterium Tuberculosis gi|1478219|emb|CAB01282.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium tuberculosis H37Rv] gi|13882417|gb|AAK46984.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CDC1551] gi|31619371|emb|CAD94809.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium bovis AF2122/97] gi|121494126|emb|CAL72604.1| Probable holliday junction DNA helicase ruvA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601770|gb|EAY60780.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C] gi|134150775|gb|EBA42820.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis str. Haarlem] gi|148506584|gb|ABQ74393.1| Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis H37Ra] gi|148722315|gb|ABR06940.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis F11] gi|224774085|dbj|BAH26891.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319828|gb|ACT24431.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 1435] gi|289417051|gb|EFD14291.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T46] gi|289421201|gb|EFD18402.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CPHL_A] gi|289438250|gb|EFD20743.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 605] gi|289539734|gb|EFD44312.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis K85] gi|289544518|gb|EFD48166.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T17] gi|289686914|gb|EFD54402.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis 02_1987] gi|289695299|gb|EFD62728.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis EAS054] gi|289710272|gb|EFD74288.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM 1503] gi|289714288|gb|EFD78300.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis T85] gi|298495862|gb|EFI31156.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 94_M4241A] gi|308214722|gb|EFO74121.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu001] gi|308326462|gb|EFP15313.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu002] gi|308329914|gb|EFP18765.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu003] gi|308333529|gb|EFP22380.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu004] gi|308337556|gb|EFP26407.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu005] gi|308341223|gb|EFP30074.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu006] gi|308346003|gb|EFP34854.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu007] gi|308349030|gb|EFP37881.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu008] gi|308352726|gb|EFP41577.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu009] gi|308357598|gb|EFP46449.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu010] gi|308361540|gb|EFP50391.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu011] gi|308365151|gb|EFP54002.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu012] gi|323718789|gb|EGB27946.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis CDC1551A] gi|326904206|gb|EGE51139.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis W-148] gi|328458095|gb|AEB03518.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 4207] Length = 196 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L + + N + ++PGI + Sbjct: 60 YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K A + + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +VL + S + R AL + Sbjct: 169 TDTVLAANHDATTSSAL-RSALSLL 192 >gi|317969751|ref|ZP_07971141.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0205] Length = 225 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 7/213 (3%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + + VL+ GV Y + P R LG G L V +R+D Sbjct: 9 MIGWLQGQLADRWHLNNRFGVLLVCSGVGYEVQMPRRHWDQLGGNGTEAALHVHQVIRED 68 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R F L +V GVG ++A+G+L +++ ELV +I+ + + + Q PG+ Sbjct: 69 SWTLYGFCARHERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRQLCQAPGV 128 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQ 174 + A R+ EL+ + Q + + + P+ L LGY Sbjct: 129 GKRTAERLSVELRTRLQQRYGESLQLSQSDDLQVSDSGEGPAAGVREEVQLTLSALGYEA 188 Query: 175 DQATTAVVSVLKKEKNI-ADDSQIIRLALRAIS 206 + A+ ++ + + D +R +LR +S Sbjct: 189 LEINRALRAISPQGPELGEDGDAWLRESLRYLS 221 >gi|219849021|ref|YP_002463454.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM 9485] gi|254766951|sp|B8GCH4|RUVA_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219543280|gb|ACL25018.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM 9485] Length = 195 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 17/209 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I+ + DY++++ G+ ++IY P TLS G +G L +R+D + L Sbjct: 1 MIASIRGVIQSIGNDYLIVETGGIGFLIYAPRSTLSAAGAVGSDIFLHTILIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R F L V GVG ++A+ +LS T E+ I + +A++PGI K Sbjct: 61 YGFSDNAQRSLFEQLIGVSGVGPKLALSLLSSGTPDEVRSMIAGGDVARLARVPGIGKKT 120 Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ EL+GK L++ +S +++E + I LV+LGY +A Sbjct: 121 AERIVLELRGKIDFRQLAASGSTSVSALDRELSEI-------------LVSLGYSAAEAA 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207 A+ S+ + +RLALR Sbjct: 168 AAIASLPSDAPP--TLEERLRLALRYFGS 194 >gi|329942438|ref|ZP_08291248.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10] gi|332287079|ref|YP_004421980.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|325507386|gb|ADZ19024.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|328815348|gb|EGF85336.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10] gi|328914313|gb|AEB55146.1| Holliday junction DNA helicase RuvA [Chlamydophila psittaci 6BC] Length = 207 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++++ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 1 MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 61 LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q + + PS I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLADLLPLDSQITASWGP------AKPSCMEEGIQALAALGYPKSSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 175 MIAEAMSELPDHASIAEILPIALKK 199 >gi|296170845|ref|ZP_06852406.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894501|gb|EFG74242.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 197 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + G+ D+ +I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVLGVALDHAVIEAAGVGYRVNATPSTLATL-RTGTEARLITAMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L +V GVG R+AM L+ A L + + + + ++PGI + Sbjct: 60 YGFTDAETRDLFLTLLTVSGVGPRLAMATLAVHDAAALRQVLHDGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + ++ A + + + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKVGAAAAAG----------GASVVNGHAVRGPVVEALVGLGFAVKQAEEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL E++ A S +R AL + Sbjct: 170 TDKVLATEQD-ATTSGALRAALSLL 193 >gi|296139644|ref|YP_003646887.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM 20162] gi|296027778|gb|ADG78548.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM 20162] Length = 199 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++ GV Y + T L + G +L +R+D + L Sbjct: 1 MIASLRGEVRHIGLDHVVVECAGVGYKVLVAPATAGALTR-GSEGSLLTSMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F LLQ+VQGVG R+AM ++ + ++ +I + K + IPGI ++ Sbjct: 60 YGFTDSPQQELFHLLQTVQGVGPRLAMAAIAVLEPAQMQSAIASGDIKTLCLIPGIGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + S+ V Q + A + AL LG+ QA A Sbjct: 120 AERIHIELKDKVAAPSTSVGQAGTS-------NAPSGGTAQQLLDALEGLGFTPKQAEPA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ + S+++R AL+++ Sbjct: 173 VAAAVEAGPDKP-VSELLRDALKSL 196 >gi|306828753|ref|ZP_07461945.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus mitis ATCC 6249] gi|304428931|gb|EFM32019.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus mitis ATCC 6249] Length = 197 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVAV------QTSAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|307710210|ref|ZP_07646653.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564] gi|307618972|gb|EFN98105.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564] Length = 197 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI+Y + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLETNGIGYILYV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVSGDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|15900116|ref|NP_344720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae TIGR4] gi|111657940|ref|ZP_01408649.1| hypothetical protein SpneT_02000889 [Streptococcus pneumoniae TIGR4] gi|148987917|ref|ZP_01819380.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP6-BS73] gi|148992760|ref|ZP_01822403.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP9-BS68] gi|149001716|ref|ZP_01826689.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] gi|149005932|ref|ZP_01829661.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP18-BS74] gi|168486048|ref|ZP_02710556.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1087-00] gi|168490355|ref|ZP_02714554.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP195] gi|168493877|ref|ZP_02718020.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC3059-06] gi|169832637|ref|YP_001693700.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae Hungary19A-6] gi|237649747|ref|ZP_04523999.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI 1974] gi|237821445|ref|ZP_04597290.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI 1974M2] gi|307126405|ref|YP_003878436.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae 670-6B] gi|20455255|sp|Q97SY4|RUVA_STRPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560133|sp|B1I8F7|RUVA_STRPI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|14971646|gb|AAK74360.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae TIGR4] gi|147760174|gb|EDK67163.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] gi|147762288|gb|EDK69249.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP18-BS74] gi|147926381|gb|EDK77454.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP6-BS73] gi|147928486|gb|EDK79501.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP9-BS68] gi|168995139|gb|ACA35751.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae Hungary19A-6] gi|183570844|gb|EDT91372.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1087-00] gi|183571324|gb|EDT91852.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP195] gi|183576015|gb|EDT96543.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC3059-06] gi|306483467|gb|ADM90336.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae 670-6B] gi|332075851|gb|EGI86318.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA17570] gi|332076630|gb|EGI87092.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA17545] gi|332077485|gb|EGI87946.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA41301] gi|332204192|gb|EGJ18257.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA47901] Length = 197 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|307711076|ref|ZP_07647498.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321] gi|307617038|gb|EFN96216.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321] Length = 197 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G+I ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQINQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + K + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPA------KVEVQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|289550593|ref|YP_003471497.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis HKU09-01] gi|289180125|gb|ADC87370.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis HKU09-01] Length = 202 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 101/210 (48%), Gaps = 15/210 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ QG+ Y I P + T++ +R+D L Sbjct: 1 MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYNQAVTIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKA-----ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A +I+ +LKGK S S+ D+S +++ +I GY + Sbjct: 120 ARQIILDLKGKVNYTEASSNDSIHIDDISSTSQKDNYIAEALLALEAL-------GYSKR 172 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + V L+++ + + +++ L+++ Sbjct: 173 EISK-VEKTLQQQV-VTSVDEAVKIGLQSL 200 >gi|114776334|ref|ZP_01451379.1| putative Holliday junction DNA helicase RuvA [Mariprofundus ferrooxydans PV-1] gi|114553164|gb|EAU55562.1| putative Holliday junction DNA helicase RuvA [Mariprofundus ferrooxydans PV-1] Length = 188 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 20/207 (9%) Query: 1 MIGKIKGNIEGLYE-DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G + L VL+ G+ Y + ++TL L ++G+ L + T++R+DQI Sbjct: 1 MIGWLSGTVRALDPAGSVLLVTGGIGYDVSVSVQTLCKL-RLGEAAELSIHTYVREDQIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +R+ F L SV G+GAR+A+ ++ ++ EL+ +I + IA+ PGI K Sbjct: 60 LFGFANSNEREIFRKLTSVSGIGARMALNLMGGMSIEELIGAIEHADDLAIARTPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL+GK S+++ +S + A SAL NLGY Q Sbjct: 120 TAQRLILELQGKLGSVAAEGGAAIS-------------NKADEVRSALTNLGYKPAQIDL 166 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V AD + R AL+A+S Sbjct: 167 ALKHV-----EPADFESMFRAALKAMS 188 >gi|332202100|gb|EGJ16169.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA41317] Length = 197 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|313837773|gb|EFS75487.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes HL037PA2] gi|314927345|gb|EFS91176.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes HL044PA1] gi|314972425|gb|EFT16522.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes HL037PA3] gi|328907430|gb|EGG27196.1| holliday junction DNA helicase RuvA [Propionibacterium sp. P08] Length = 201 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V++D GV + CP T + +I +L +R+D + L Sbjct: 1 MISHLSGKVNAAGLTWVVLDNCGVGIKVLCPPATAAS-ARIDQDMSLQTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K Sbjct: 60 YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAIANEDDATLCRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ ELK K + + + S+ LV LG+ A A Sbjct: 120 AAKMILELKDKMAAFAPRGSSSSGAAH-------VAASWREQVAEGLVGLGWPTKDAEKA 172 Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206 V V L++ ++R ALR+++ Sbjct: 173 VDEVAALREADPTMTIGSLMRAALRSLA 200 >gi|307564556|ref|ZP_07627096.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A] gi|307346714|gb|EFN92011.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A] Length = 205 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE----THMRQD 56 MI IKG + + +++ G+ Y I + T S + D L++ T R D Sbjct: 1 MIEYIKGELIEMTPAIAIVEAYGIGYAINISLNTYSDIQGKKD-IKLYIYEAIITGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R + LL +V GVGA A +LS T +EL I +++ + GI Sbjct: 60 SYTLYGFSSKQERSLYKLLITVSGVGANTARMILSSFTPSELCNVISNGEERMLKSVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +L+ K I + VN ++ + AISAL LG+ Sbjct: 120 GLKTAQRIIVDLRDKIIQADIANEL---YVNTSSNNLNIDTAVKDEAISALTMLGFSPVS 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 ++ V+ VL K+ N+ Q+++ AL+ I Sbjct: 177 SSKVVIEVLTKDANLP-VEQVVKQALKII 204 >gi|225871416|ref|YP_002747363.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi 4047] gi|254767388|sp|C0MAS2|RUVA_STRE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225700820|emb|CAW95524.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi 4047] Length = 198 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ ++ F+ L SV G+G A+ +++ LV +I + + + P I K Sbjct: 60 FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ +K A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKPPKAKQQGNEQLDEAVEALLALGYKATE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKML 195 >gi|161506974|ref|YP_001576928.1| Holliday junction DNA helicase RuvA [Lactobacillus helveticus DPC 4571] gi|172048184|sp|A8YTI1|RUVA_LACH4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160347963|gb|ABX26637.1| Holliday junction DNA helicase [Lactobacillus helveticus DPC 4571] Length = 196 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 10/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + Y+++DV GV Y +Y P GD +F+E +R I L Sbjct: 1 MYEYFEGIVTVITPSYIVVDVNGVGYKVYSPTPFAYQ---KGDKAKIFIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ D+ F+ L SV G+G + A+ +++ A L E+I K + + PG+ K Sbjct: 58 YGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK ++ ++++ ++ +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLRDY-------VARLDRQDEEQGNISPALNDALLALIALGYTQKEVDRI 170 Query: 181 VVSVLKKEKNIAD 193 + + + AD Sbjct: 171 TTKLEEVNADTAD 183 >gi|289168757|ref|YP_003447026.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6] gi|303259227|ref|ZP_07345205.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP-BS293] gi|303260983|ref|ZP_07346932.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP14-BS292] gi|303263310|ref|ZP_07349233.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS397] gi|303265475|ref|ZP_07351375.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS457] gi|303267967|ref|ZP_07353769.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS458] gi|288908324|emb|CBJ23166.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6] gi|302637820|gb|EFL68306.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP14-BS292] gi|302639645|gb|EFL70102.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP-BS293] gi|302642663|gb|EFL73008.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS458] gi|302644915|gb|EFL75162.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS457] gi|302647083|gb|EFL77307.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS397] Length = 197 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|315658088|ref|ZP_07910960.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus lugdunensis M23590] gi|315496417|gb|EFU84740.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus lugdunensis M23590] Length = 203 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 101/210 (48%), Gaps = 15/210 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ QG+ Y I P + T++ +R+D L Sbjct: 2 MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYYQEVTIYTSLIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 61 YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 120 Query: 121 ASRIMTELKGKA-----ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A +I+ +LKGK S S+ D+S +++ +I GY + Sbjct: 121 ARQIILDLKGKVNYTEASSNDSIHIDDVSNTSQKDNYIAEALLALEAL-------GYSKR 173 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + V L+++ + + +++ L+A+ Sbjct: 174 EISK-VEKTLQQQV-VTSVDEAVKIGLQAL 201 >gi|310816584|ref|YP_003964548.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium vulgare Y25] gi|308755319|gb|ADO43248.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium vulgare Y25] Length = 218 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 10/186 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G I D +L+DV+GV YII+ R ++ L +G+ L+ + +R+D ++L Sbjct: 1 MIGWLSGRIIEKSGDQILLDVRGVGYIIHVSDRVMASLPGVGEAVALYTDLLVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +++W LL VQGVGA+ A+ ++ + L ++ L + IA+ GI K Sbjct: 61 FGFTSRTEKEWHKLLMGVQGVGAKAALAIMGALGGDGLSRALALGDWSSIAKAKGIGPKT 120 Query: 121 ASRIMTELKGKAI----------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 A R++ ELKGKA SL +V++ D + + +A+SAL NL Sbjct: 121 AQRVVMELKGKAPTVMAMSGGAESLDAVIEDDGPAPKPAARRARPVSNAQPDALSALGNL 180 Query: 171 GYGQDQ 176 GY Sbjct: 181 GYSPSD 186 >gi|114704960|ref|ZP_01437868.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi HTCC2506] gi|114539745|gb|EAU42865.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi HTCC2506] Length = 206 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E + ED+V++DV GV Y+ +C RTL+ L +G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTVEEIGEDHVVVDVHGVGYVAFCGARTLAGLSGVGEAIVLFIETIVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R WF LLQ+VQGVG++VA+ V+ +++ +L ++ LQ+ ++A+ PG+ K+ Sbjct: 61 YGFATAAERDWFRLLQTVQGVGSKVALAVIGTLSSGDLANAVALQDKAMVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK +A + S ++ + ++ + + +A+SAL NLGY +DQA TA Sbjct: 121 AQRIVAELKDRAPAFSGAGSEESFGLKRDIGG-GTASAPVADAVSALTNLGYPRDQAATA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + ++ AD +++IRL L+A+S Sbjct: 180 VATAVRDAGEDADSAKLIRLGLKALS 205 >gi|58336747|ref|YP_193332.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus NCFM] gi|227903308|ref|ZP_04021113.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796] gi|75358012|sp|Q5FLX3|RUVA_LACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58254064|gb|AAV42301.1| helicase Holliday junction [Lactobacillus acidophilus NCFM] gi|227868937|gb|EEJ76358.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796] Length = 195 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV++DV G+ Y ++ P K G +++E +R I L Sbjct: 1 MYEYFEGIISEVTPSYVVVDVNGIGYKVFSPTPFAY---KQGQKAKVYIEQIVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQDQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + + + + +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYVARLDKPENG--------EEISPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 +++ E + AD Sbjct: 170 TPKLVEIEADTAD 182 >gi|307705927|ref|ZP_07642764.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597] gi|307620523|gb|EFN99622.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597] Length = 197 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVAV------KASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|15902209|ref|NP_357759.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae R6] gi|116515482|ref|YP_815689.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae D39] gi|148996605|ref|ZP_01824323.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP11-BS70] gi|149011051|ref|ZP_01832356.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP19-BS75] gi|168576389|ref|ZP_02722272.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae MLV-016] gi|182683163|ref|YP_001834910.1| holliday junction DNA helicase motor protein [Streptococcus pneumoniae CGSP14] gi|221231090|ref|YP_002510242.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC 700669] gi|303255118|ref|ZP_07341194.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS455] gi|307066862|ref|YP_003875828.1| Holliday junction resolvasome DNA-binding subunit [Streptococcus pneumoniae AP200] gi|32171637|sp|Q8DRE8|RUVA_STRR6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122279425|sp|Q04MQ9|RUVA_STRP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560134|sp|B2IS15|RUVA_STRPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767390|sp|B8ZKD4|RUVA_STRPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15457707|gb|AAK98969.1| Holliday junction DNA helicase [Streptococcus pneumoniae R6] gi|116076058|gb|ABJ53778.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae D39] gi|147757180|gb|EDK64219.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP11-BS70] gi|147764687|gb|EDK71617.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP19-BS75] gi|182628497|gb|ACB89445.1| holliday junction DNA helicase motor protein [Streptococcus pneumoniae CGSP14] gi|183577836|gb|EDT98364.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae MLV-016] gi|220673550|emb|CAR68036.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC 700669] gi|301793458|emb|CBW35831.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae INV104] gi|301801130|emb|CBW33803.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae INV200] gi|302597948|gb|EFL65018.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS455] gi|306408399|gb|ADM83826.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus pneumoniae AP200] Length = 197 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDGLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|289706228|ref|ZP_06502591.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58] gi|289557067|gb|EFD50395.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58] Length = 214 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + D +I V G+ +TL+ L + G + +++D + L Sbjct: 1 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLATLHE-GRPGAVQTHLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F +L + GVG R+A+ +LS + ++ ++ K + ++PGI K+ Sbjct: 60 YGFADRDEREVFEVLITANGVGPRLALAILSVHHPEAVRRAVTEEDEKTLTRVPGIGPKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ V + + V+ E A + + + A+ LG+ + +A A Sbjct: 120 ARKIIVELSGRLAPTGEPVPEAEAEVSDEPAVETV---WHADVVQAMAGLGWSEKEALKA 176 Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203 V + + + D + ++R LR Sbjct: 177 VEATVAARPELDEGRDVAALLRATLR 202 >gi|239917790|ref|YP_002957348.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus NCTC 2665] gi|259495650|sp|C5CCI2|RUVA_MICLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239838997|gb|ACS30794.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus NCTC 2665] Length = 214 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + D +I V G+ +TLS L + G + +++D + L Sbjct: 1 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHE-GRPGAVQTHLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F +L + GVG R+A+ +LS + ++ ++ K + ++PGI K+ Sbjct: 60 YGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ V + + E A + + + A+ LG+ + +A A Sbjct: 120 ARKIIVELSGRLAPTGEPVPGAEAEASDEPAVETV---WHADVVQAMAGLGWSEKEALKA 176 Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203 V + + + D + ++R LR Sbjct: 177 VEATVAARPELDEGRDVAALLRATLR 202 >gi|160915302|ref|ZP_02077515.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991] gi|158433101|gb|EDP11390.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991] Length = 193 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I D ++I+ G+ Y IY ++ L+ H+R+D I L Sbjct: 1 MIAFIKGIIHSYSNDSLIIENNGIGYRIYISNP---QSVRLNSEVILYTYQHVREDAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F+ L SV+GVG + A+ +L+ +++E+I + K++ +PGI K Sbjct: 58 FGFTTMEEHDLFLQLISVKGVGPKTALAMLAVCPVKQMIEAIEHNDVKLLKSLPGIGAKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + S +Q + ++AI AL LGY + + Sbjct: 118 ASQIVLDLKGKLVEEVSEIQ-------------VKENAELVDAIEALKALGYKNAEINS- 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L +E + A Q IR AL ++ Sbjct: 164 IKKELSEE-SFATSDQYIRKALSILA 188 >gi|307720862|ref|YP_003892002.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas autotrophica DSM 16294] gi|306978955|gb|ADN08990.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas autotrophica DSM 16294] Length = 189 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E YV ++VQG+ Y ++ + T S L K + +LF +R+D L Sbjct: 1 MIVGLHGKVEYKEPAYVHVNVQGIVYEVFISLHTFSALPK--EDVSLFTTQIIREDAQLL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +++ F L + GVG +VAM + S T ++ I ++ + ++PGI K Sbjct: 59 FGFMDMSEKKMFSRLIKINGVGPKVAMAICSTYTPSQFATVINNKDVNGVKKVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL G + + D + QA A AL LG+ +D+ + A Sbjct: 119 AGRILVELNG----FDAEILGDSATPQASQA--------FNEASEALEALGFKKDKISKA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + D + +++ AL+ + Sbjct: 167 LSA-----CEGDDTASLVKGALKQL 186 >gi|220932069|ref|YP_002508977.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168] gi|254766964|sp|B8CXG3|RUVA_HALOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219993379|gb|ACL69982.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168] Length = 194 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KGN+ E+ V+++ GV Y + P L +G+ LFV T++R+D + L Sbjct: 1 MIGYLKGNVIWKAENKVILETGGVGYRVLVPSTV--RLKPVGEKLELFVYTYVREDSLDL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L SV G+G R A+ +LS ++ + +E+I+ + ++ Q+ GI K Sbjct: 59 YGFKTMEERELFETLLSVSGIGPRAAINILSSLSYKKFIEAILTEKVSILKQVSGIGPKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK +S ++ + + AL +LGY + + A Sbjct: 119 AKRLILELKGKLKDMSGDFEEPLPDNRNTELS------------DALASLGYSELEIEEA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + + K + I+ AL + Sbjct: 167 LSNADIKNNG--SLEENIKKALGYLGS 191 >gi|241889770|ref|ZP_04777068.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC 10379] gi|241863392|gb|EER67776.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC 10379] Length = 193 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +++D G+ Y I L + T+F+ +R+D L Sbjct: 1 MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEYQL---NEEKTVFISQQVREDSNIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q+ + + PGI K Sbjct: 58 YGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVTYLTKFPGIGKKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK + + + VN ++ +AI AL LGY + + Sbjct: 118 AQQIILDLQGKVDFSMTNISSAPTAVN----------NYLSDAILALEALGYSKKELAKI 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + ++ L+ + Sbjct: 168 EKKL--SAFDFSGVDEYVKQGLKLL 190 >gi|15674189|ref|NP_268364.1| Holliday junction DNA helicase motor protein [Lactococcus lactis subsp. lactis Il1403] gi|281492890|ref|YP_003354870.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp. lactis KF147] gi|13878764|sp|Q9CDL2|RUVA_LACLA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|12725272|gb|AAK06305.1|AE006449_11 DNA helicase RuvA [Lactococcus lactis subsp. lactis Il1403] gi|281376542|gb|ADA66028.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp. lactis KF147] Length = 197 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++IDV G+ Y+I + + ++V +R+D L Sbjct: 1 MFEYLNGKLVKISPTNIVIDVAGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L SV G+G + A+ +++ L+ +I + K + + PG+ K Sbjct: 60 YGFVNEAEKALFLRLISVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +V + + AI AL LGY + Sbjct: 120 AMQMVLDLAGKFDATGTVGISLLDAGPAGNLAL-------EEAIEALQALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L +E + + I+ AL+ + Sbjct: 172 IEKKLAQETGLTS-EEYIKSALKLM 195 >gi|283783300|ref|YP_003374054.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05] gi|283441415|gb|ADB13881.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05] Length = 209 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 10/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LI V GV Y Y P + LS L + G ++ + QD + L Sbjct: 1 MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ +Q V G+G +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDCLLQAISEGDVTSLSSAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG SL S + D S + Q++ + S I LV+LG+ Q A A Sbjct: 120 AQKIILELKG---SLDSSILADSSN-DSTQSNKQIVDSSVQCVIEGLVSLGWRQVDAQRA 175 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V V + AD ++R+AL ++ Sbjct: 176 VEQVCADNNISTPISDADLPNVLRMALASL 205 >gi|293364377|ref|ZP_06611103.1| crossover junction endoribonuclease subunit A [Streptococcus oralis ATCC 35037] gi|307702657|ref|ZP_07639609.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC 35037] gi|331267168|ref|YP_004326798.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5] gi|291317223|gb|EFE57650.1| crossover junction endoribonuclease subunit A [Streptococcus oralis ATCC 35037] gi|307623773|gb|EFO02758.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC 35037] gi|326683840|emb|CBZ01458.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5] Length = 197 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIILEANGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVAV------QTSAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|268318974|ref|YP_003292630.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus johnsonii FI9785] gi|262397349|emb|CAX66363.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus johnsonii FI9785] Length = 192 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y+++DV GV Y I CP ++VE +R I L Sbjct: 1 MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSY---DENQPAAIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYV-----------KKSTAAADLTPSLQDALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD ++ AL + Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189 >gi|195978973|ref|YP_002124217.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|229560129|sp|B4U0J5|RUVA_STREM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|195975678|gb|ACG63204.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 198 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ ++ F+ L SV G+G A+ +++ LV +I + + + P I K Sbjct: 60 FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + ++ AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEAPKEESSKLPKAKHQE------NEQLDEAIEALLALGYKATE-LKK 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A Q I+ AL+ + Sbjct: 173 IRAFFEGTSETA--EQYIKSALKML 195 >gi|212715818|ref|ZP_03323946.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM 16992] gi|212661185|gb|EEB21760.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM 16992] Length = 210 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G ++ + +I+V GV Y P L+ + G ++ ++ QD I L Sbjct: 6 MIGMLHGQVDSIDAASAIIEVGGVGYETRMPSADLASMHA-GQTVKVYTSLNVSQDAITL 64 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 65 YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLARAVADGDATALAKAPGLGKKG 124 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A +I+ ELKG D+S + S + L++LG+ Q A Sbjct: 125 AQKIILELKG---------SIDLSQIEGASPETRSTEDTGSEQVVEGLMSLGWRQQDAVH 175 Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205 AV V + D +++RLAL ++ Sbjct: 176 AVQEVCESNHIDIPLGDDDVPRVLRLALASL 206 >gi|227432395|ref|ZP_03914385.1| crossover junction endoribonuclease subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351834|gb|EEJ42070.1| crossover junction endoribonuclease subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 196 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G I + Y++I GV Y +Y + ++V+ +R++ I Sbjct: 1 MYEYINGLITNITPSYIVIASRSGVGYRLY-SANPYRF--EENVESHVYVQQIVRENDIS 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F L +V G+G + A+ +L+ A L+ ++ N + Q PG+ K Sbjct: 58 LYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+S S N EQ+ +A+ AL+ LGY Sbjct: 118 TAQQIVLDLKGKLDELASKTGMVDSSSNPEQSQ------DLDDALEALLALGYTAKDV-K 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV ++ + + D IR AL+ + Sbjct: 171 AVAQIIGRNSDTTDG--YIRSALKLL 194 >gi|116617732|ref|YP_818103.1| Holliday junction resolvasome, DNA-binding subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272067|sp|Q03YJ2|RUVA_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116096579|gb|ABJ61730.1| Holliday junction DNA helicase subunit RuvA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 196 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G I + Y++I GV Y +Y + ++V+ +R++ I Sbjct: 1 MYEYINGLITNITPSYIVIASRSGVGYRLY-SANPYRF--EENVESHVYVQQIVRENDIS 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F L +V G+G + A+ +L+ A L+ ++ N + Q PG+ K Sbjct: 58 LYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+S S N EQ+ +A+ AL+ LGY Sbjct: 118 TAQQIVLDLKGKLDELASKTGMVDSSSNPEQSQ------ALDDALEALLALGYTAKDV-K 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV ++ + + D IR AL+ + Sbjct: 171 AVAQIIGRNSDTTDG--YIRSALKLL 194 >gi|329767086|ref|ZP_08258614.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341] gi|328837811|gb|EGF87436.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341] Length = 193 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +++D G+ Y + L + +F+ +R+D L Sbjct: 1 MYAYIKGKISEINPTNIVVDNNGIGYEVVVANPYEYQL---NEEKIVFISQQVREDSNIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q+ + + PGI K Sbjct: 58 YGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVNYLTKFPGIGKKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK + + + VN ++ +A+ AL LGY + + T Sbjct: 118 AQQIILDLQGKVDFSMTNISSAPTAVN----------NYLSDAMLALEALGYSKKELTKI 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A + ++ L+ + Sbjct: 168 EKKL--SAFDFAGVDEYVKQGLKLL 190 >gi|322375071|ref|ZP_08049585.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300] gi|321280571|gb|EFX57610.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300] Length = 197 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDALPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|306826018|ref|ZP_07459354.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431734|gb|EFM34714.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 197 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQENQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVAV------QASNENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|237802930|ref|YP_002888124.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis B/Jali20/OT] gi|237804852|ref|YP_002889006.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis B/TZ1A828/OT] gi|231273152|emb|CAX10065.1| holliday junction DNA helicase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274164|emb|CAX10958.1| holliday junction DNA helicase [Chlamydia trachomatis B/Jali20/OT] Length = 200 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + + + + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|229495868|ref|ZP_04389594.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis ATCC 35406] gi|229317181|gb|EEN83088.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis ATCC 35406] Length = 204 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I+ L L+DV GV Y I + + L L++ +R+D L Sbjct: 6 MIAYIEGKIDRLSPTNALLDVGGVGYDINITLTDYTALQGKPS-ARLWITEIIREDAHLL 64 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + R +F L SV GVG A +LS T +L I ++ + GI +K Sbjct: 65 YGFVREESRAFFEKLCSVSGVGPSTARLILSSYTPNDLASIIGNGAVDLLKNVKGIGLKT 124 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LKGK + D+S E + + + + A AL LG+ + A Sbjct: 125 AQRIVVDLKGKI----DLSAYDLSEGMPEGGNAPEVAAVSDEAQRALKMLGFPEAAIRKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL + ++ ++I+ AL+ + Sbjct: 181 VKAVLGADAHLP-VEEVIKQALKRL 204 >gi|158336024|ref|YP_001517198.1| Holliday junction DNA helicase RuvA [Acaryochloris marina MBIC11017] gi|189045739|sp|B0CAE7|RUVA_ACAM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158306265|gb|ABW27882.1| holliday junction DNA helicase RuvA [Acaryochloris marina MBIC11017] Length = 208 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 13/213 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG ++G + L + + +DV V Y +Y P R L + +F +R+ Sbjct: 1 MIGFLQGYVVSLQQTSTHRTLLTLDVNQVGYDLYVPSRIRQHLPPDQEQMRVFTHLQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 DQ+ LFGF +R F L +V G+G ++A+ ++ + +LV++I+ N+K++ + PG Sbjct: 61 DQMVLFGFAVVAERDLFRQLIAVSGIGPQLALALIDTLGLQDLVQAIVNSNTKMLVKTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI EL+ K K + S + L+ LGY Sbjct: 121 VGAKTAERIALELRSKLAEWRD------QAGLKTLPSAGPIDSVQEDVEMTLLALGYTSQ 174 Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206 + A+ +V + +D IR A+ +S Sbjct: 175 EVMRALQAVGQNTALAKNSDTEAWIREAIAWLS 207 >gi|255534553|ref|YP_003094924.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium 3519-10] gi|255340749|gb|ACU06862.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium 3519-10] Length = 255 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KGN++ L V+IDV GV Y + ++T L +G L ++ +R+D L Sbjct: 62 MIYSLKGNVQELNPTSVIIDVNGVGYYVGVSLQTSEKLV-LGKETFLNIQQIIREDAHLL 120 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F LL SV GVG A+ +LS ++ E+ +I+ NS ++ ++ GI K Sbjct: 121 FGFNTISEKELFNLLISVNGVGPVSALIMLSSLSLQEIASAILSGNSLLLQKVKGIGTKT 180 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ K + + VN + A+SAL LG + + Sbjct: 181 AERIIVDLRDKVQKFNISEGNISNFVNNK---------VKDEALSALEVLGIPKKMSEKI 231 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK ++ +++ L+ I Sbjct: 232 ADRFLKTNADL-SVEDLVKQILKNI 255 >gi|299535650|ref|ZP_07048971.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus fusiformis ZC1] gi|298728850|gb|EFI69404.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus fusiformis ZC1] Length = 206 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 89/196 (45%), Gaps = 3/196 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + ++++++ QG+ + + P + ++V H+R+D L Sbjct: 1 MYDYLKGQITRITPEFIVLEQQGIGWQLNTPNPFAFRTSALEQ--QIYVHLHVREDAQVL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R+ F L V G+G + A+ +L+ +++ +I ++ + + PG+ K Sbjct: 59 YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK SL ++ + + + A+ AL+ LGY + + Sbjct: 119 ARQMILDLKGKLGSLLDTLELPSAEDELPLFGVNAYKHELEEALLALMALGYSEKELEK- 177 Query: 181 VVSVLKKEKNIADDSQ 196 + L+ + Sbjct: 178 IKPQLEDNDKLETTDA 193 >gi|297195496|ref|ZP_06912894.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|197722111|gb|EDY66019.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 202 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 13/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TLS L +IG L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPNTLSGL-RIGQEAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + V++ S+ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGEPLGTGPAVGAPVSR---------SWRDQLHAALIGLGYATREADEA 170 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + + + ++R AL+++S Sbjct: 171 VAAVAPQAEAMGAAPEVGPLLRAALQSLS 199 >gi|227549154|ref|ZP_03979203.1| Holliday junction DNA helicase motor protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078774|gb|EEI16737.1| Holliday junction DNA helicase motor protein [Corynebacterium lipophiloflavum DSM 44291] Length = 206 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 8/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+ GV Y + TL+ L + G+ + ++ D + L Sbjct: 1 MIDSLHGEVLSIGLDHAVIECAGVGYRLLAGPPTLARLTR-GETTRVLTSMVVKDDGVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ---IPGIS 117 +GF D R F LQ+V G+G ++A+ LS EL I ++ I + IPG+ Sbjct: 60 YGFADDGARTMFHRLQTVSGLGPKLALACLSVFEPAELAGLITAGDAAAIKRIQTIPGVG 119 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K+A R+ ELK K L + + + A A + AL+ LG+ A Sbjct: 120 KKMAERMALELKDKIDGLYATSEPGAAPSAPVTAGT---SLAAEQVVEALIGLGFADKVA 176 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207 V +++++ S+++R AL + Sbjct: 177 RGVVDTLIQERPGD-SSSELLRAALTQLGS 205 >gi|317121686|ref|YP_004101689.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis DSM 12885] gi|315591666|gb|ADU50962.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis DSM 12885] Length = 223 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 7/181 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L D V IDV GV + + +T L G+ L +R+DQ L Sbjct: 1 MIAFLRGELVALAGDEVWIDVGGVGFRVAVSRQTQRRLPPAGEPVRLLTRLVVREDQWSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V GVG RVA+ VLS ++ EL +++LQ+ ++ ++PG+ K+ Sbjct: 61 YGFATADEQAAFDALLTVSGVGPRVALAVLSVLSPEELRRAVVLQDPALLTRVPGVGPKL 120 Query: 121 ASRIMTELKGKAISL-------SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++TEL+ + +V + S +A++AL +LGY Sbjct: 121 ARRLLTELRDRLGEPLAEGAAAGAVAPAGGAASTPGGLPGGVATSPREDALAALESLGYS 180 Query: 174 Q 174 + Sbjct: 181 R 181 >gi|254441542|ref|ZP_05055035.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 307] gi|198251620|gb|EDY75935.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 307] Length = 231 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 24/229 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G +E D+VLIDV+GV YI++ R ++ L ++G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRLEYRATDHVLIDVKGVGYIVFVSDRVMATLPRVGEAVALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + SI + + +A G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWATVATAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-----------------------VNKEQAHICSMP 157 A +++ +LK KA S+ ++ V++ Sbjct: 121 AKKVILDLKDKAHSVMAMAGTAAGAASAAGGVASVSADAETDADADALVDRYDGPAAGNG 180 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+SAL NLGYG A A V+ E + AD + +IR AL+ ++ Sbjct: 181 AAQSEALSALSNLGYGPSDAAGA-VAQAAVENDGADTAVLIRAALKLLA 228 >gi|166154716|ref|YP_001654834.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis 434/Bu] gi|166155591|ref|YP_001653846.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335990|ref|ZP_07224234.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis L2tet1] gi|229560018|sp|B0B875|RUVA_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560020|sp|B0BCE0|RUVA_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|165930704|emb|CAP04201.1| holliday junction DNA helicase [Chlamydia trachomatis 434/Bu] gi|165931579|emb|CAP07155.1| holliday junction DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 200 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + YV+I+ G+ Y I R L L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHIDGSYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + + + + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|126654019|ref|ZP_01725852.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905] gi|126589493|gb|EAZ83637.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905] Length = 206 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 89/196 (45%), Gaps = 3/196 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + +Y++++ QG+ + + P + ++V H+R+D L Sbjct: 1 MYDYLKGLITRITPEYIVLEQQGIGWQLNTPNPFAFRTSALEQ--QIYVHLHVREDAQML 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R+ F L V G+G + A+ +L+ +++ +I ++ + + PG+ K Sbjct: 59 YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK SL ++ + + + AI AL+ LGY + + Sbjct: 119 ARQMILDLKGKLGSLLETIELPSTEDELPLFGVNAYKHELEEAILALMALGYSEKELEK- 177 Query: 181 VVSVLKKEKNIADDSQ 196 + L+ + Sbjct: 178 IRPQLEDNDKLETTDA 193 >gi|42523918|ref|NP_969298.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus HD100] gi|81616890|sp|Q6MKB7|RUVA_BDEBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|39576125|emb|CAE80291.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus HD100] Length = 196 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 MIG ++G I + D LIDV GV Y I+ TL L + G+ +++ TH+R+D ++ Sbjct: 1 MIGYLRGKIIEVMNDSALIDVSGVGYEIHASSNTLGDLQALLGNDIIVWIHTHVREDALQ 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF ++ F+ L V GVG ++A+ +LS ++ E I N+K ++ +P + K Sbjct: 61 LFGFHDKEEKNLFLSLLKVNGVGPKMALSILSGGRPAQIHEMIEAGNAKALSGLPKVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LKGK +S+ + + SAL+NLGY + Sbjct: 121 TAEQIILTLKGKLVSIE-----------EGGVVAKAKSVAHTQITSALLNLGYK----SQ 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 V + IR + +S Sbjct: 166 LVDQFVSSLPADIAVEDGIRKGFQTLS 192 >gi|225860211|ref|YP_002741720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae Taiwan19F-14] gi|298230115|ref|ZP_06963796.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255022|ref|ZP_06978608.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501981|ref|YP_003723921.1| crossover junction endoribonuclease subunit A [Streptococcus pneumoniae TCH8431/19A] gi|254767394|sp|C1CP48|RUVA_STRZT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225726584|gb|ACO22435.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae Taiwan19F-14] gi|298237576|gb|ADI68707.1| crossover junction endoribonuclease subunit A [Streptococcus pneumoniae TCH8431/19A] gi|327390587|gb|EGE88927.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA04375] Length = 197 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|148983581|ref|ZP_01816900.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP3-BS71] gi|149017853|ref|ZP_01834312.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP23-BS72] gi|168483820|ref|ZP_02708772.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1873-00] gi|168492137|ref|ZP_02716280.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC0288-04] gi|194397075|ref|YP_002036885.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54] gi|225853792|ref|YP_002735304.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA] gi|225855950|ref|YP_002737461.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae P1031] gi|225858040|ref|YP_002739550.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae 70585] gi|226698742|sp|B5E6D0|RUVA_STRP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767389|sp|C1CAI9|RUVA_STRP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767392|sp|C1CBY3|RUVA_STRZJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767393|sp|C1CI73|RUVA_STRZP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147923728|gb|EDK74840.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP3-BS71] gi|147931417|gb|EDK82395.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP23-BS72] gi|172042891|gb|EDT50937.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1873-00] gi|183573620|gb|EDT94148.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC0288-04] gi|194356742|gb|ACF55190.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54] gi|225721170|gb|ACO17024.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae 70585] gi|225722475|gb|ACO18328.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA] gi|225726352|gb|ACO22204.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae P1031] gi|301799335|emb|CBW31870.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae OXC141] Length = 197 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVAV------QASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|242280346|ref|YP_002992475.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM 2638] gi|259495638|sp|C6C065|RUVA_DESAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|242123240|gb|ACS80936.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM 2638] Length = 203 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +I GV Y ++ + +S L + G T +V + +R+D Sbjct: 1 MIAYIHGKLLEATDKSCIILTPGGVGYELFLTLSAISTLPESGSDVTFYVHSVIREDAFD 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF DR+ F L SV +G + A+ +LS+ +L + + ++ K ++ +PGI K Sbjct: 61 LYGFPCFDDREVFRTLISVDRLGPKKALAILSQFGPKDLQDLVFREDVKTLSIVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LK K +L S + V + S ++A+S L NLGYG D+ Sbjct: 121 SARQILWSLKDKMETLKS------ATVRSGACPVEGDRSEFLDALSGLRNLGYGDDEVRD 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + +E ++ D IR+AL+ IS Sbjct: 175 FLKDIFDEEPDL-DAGGAIRVALKKIS 200 >gi|15835402|ref|NP_297161.1| Holliday junction DNA helicase motor protein [Chlamydia muridarum Nigg] gi|270285581|ref|ZP_06194975.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg] gi|270289591|ref|ZP_06195893.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Weiss] gi|301336977|ref|ZP_07225179.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum MopnTet14] gi|13431873|sp|Q9PJP0|RUVA_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|7190816|gb|AAF39591.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg] Length = 200 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 M IKG + E YV+I+ G+ Y I R L L ++ ++V + +R+ + Sbjct: 1 MYEYIKGKLTHTDEAYVVIESFGIGYSIMLSERFLVDLRELMHQEVLIYVHSVIRETEHS 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLAILNMFPLQELCSVARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + ++ + S + I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPALMPLYLEEPVVAS------SSTTTSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEDASVAELLPVALRK 199 >gi|169831522|ref|YP_001717504.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis audaxviator MP104C] gi|229560028|sp|B1I477|RUVA_DESAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169638366|gb|ACA59872.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis audaxviator MP104C] Length = 202 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 106/207 (51%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +Y + V+++V G+ Y + P + L + G+ L+ +++ + + Sbjct: 1 MIDFLKGRLVSVYPEAVVVEVGGIGYRVQVPPSLAASLPEPGETVFLYTYLSVKETALEM 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+LDR F+LL V G+G R A+ V+ R+ L +I+ +++ ++ +PGI +K Sbjct: 61 FGFSSELDRTAFLLLLGVAGIGPRTALAVVGRLGTRRLWAAILREDTGILTTVPGIGVKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM EL+ + V ++ + A++AL++LGY +A A Sbjct: 121 ARRIMVELRDRLEKQQVAVSAELPASDGVP---VLAGRAENEALAALISLGYTPREAREA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + + ++ D + ++ ALR + Sbjct: 178 LNRLPDRK---LDAAGLVHAALRIMGS 201 >gi|309789628|ref|ZP_07684209.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6] gi|308228364|gb|EFO82011.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6] Length = 198 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+++I+ GV +++Y P L G + + L+ +R+D + L Sbjct: 1 MIASLRGTLIHIGSDHLVIETGGVGWLVYAPRSVLGACGALNETIFLYTHMIVREDALLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R F L SV GVG +V + +LS + ++ + N+ +A++PGI K Sbjct: 61 YGFQTLEQRALFESLLSVSGVGPKVGLSLLSAGSPDDIRLMVAQNNTTALARVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179 A R++ ELKGK D+ + + + PS LV+LGY +A+ Sbjct: 121 AERLVLELKGKL---------DLKGLPTAAGGVAAAPSALNAELAELLVSLGYSSAEASA 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AV S+ D +RLALR Sbjct: 172 AVASLPADAPE--DLEVRLRLALRYFGS 197 >gi|260583653|ref|ZP_05851401.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC 700633] gi|260158279|gb|EEW93347.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC 700633] Length = 198 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y++++ G+ Y I K+ + + ++ +R+D I L Sbjct: 1 MYEYLKGELVAIQPTYIVVENHGIGYQIMF-ANPYRIQLKLNEVIRVELQQIVREDSITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLSD +++ F L SV G+G + A+ +L+ ++++ N + + PG+ K Sbjct: 60 YGFLSDEEKELFQKLISVSGIGPKSAVSILANDDVNGFIQAVESGNITYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ + V + A AL+ LGY + T Sbjct: 120 AQQIVLDLKGKFTNIV------VEEVATPVVETATGIKQLEEAREALLGLGYSAKEITKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +A + + Sbjct: 174 WKELEAAAPQ--TTQEALSIAFKLL 196 >gi|227825064|ref|ZP_03989896.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21] gi|226905563|gb|EEH91481.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21] Length = 201 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG ++ + +Y ++ QGV Y IY L + + D ++ +R+D + L Sbjct: 1 MIGFIKGRVDTIGSNYAFVETQGVGYRIYMNTSDLGRMV-LDDKVKVYTYLAVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS F L +V G+G +VA G+LS + + +I ++ K + ++PGI K Sbjct: 60 YGFLSQEAYGLFTKLITVSGIGPKVAQGILSASKVDDFLLAIKNRDVKFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + E S + AL +LGY Q++ + Sbjct: 120 AERMLLELKDLTGPEGPLPESNGGFLAPE-----GPASALTETMEALASLGYTQNEISGV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + K +++ AL+ ++ Sbjct: 175 MNRI--KVTADMSAEDLLKKALQVMA 198 >gi|162146622|ref|YP_001601081.1| Holliday junction DNA helicase RuvA [Gluconacetobacter diazotrophicus PAl 5] gi|209543386|ref|YP_002275615.1| Holliday junction DNA helicase RuvA [Gluconacetobacter diazotrophicus PAl 5] gi|189045754|sp|A9HAV7|RUVA_GLUDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161785197|emb|CAP54743.1| putative holliday junction ATP-dependent DNA helicase ruvA [Gluconacetobacter diazotrophicus PAl 5] gi|209531063|gb|ACI51000.1| Holliday junction DNA helicase RuvA [Gluconacetobacter diazotrophicus PAl 5] Length = 200 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D ++DV GV Y+++ RTLS L + D + VET +R+D L Sbjct: 1 MIAHLTGLVGQMESDRCVVDVGGVGYLVHASTRTLSALPRPPDVTRVLVETVVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R WF LL +VQGVGA+VA+ +LS ++ +L I + + ++ G+ ++ Sbjct: 61 YGFAEAAERDWFRLLTTVQGVGAKVALAILSALSPGDLAGVIAAADKASLTRVSGVGARL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ KA + + ++ + + +A Sbjct: 121 AERILTELRDKAGRMPAGPGVTIAAPPASGGVEADALLALAGLG-------FRRAEAQPV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +L + AD +IR +LR ++ Sbjct: 174 VGRILARLDGKADLDVVIRESLRELA 199 >gi|83950117|ref|ZP_00958850.1| Holliday junction DNA helicase motor protein [Roseovarius nubinhibens ISM] gi|83838016|gb|EAP77312.1| Holliday junction DNA helicase motor protein [Roseovarius nubinhibens ISM] Length = 216 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 17/213 (7%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 + ED+VL+DV+GV Y++YC RTL L +G+ L+ + +R+D ++LFGF S +++ Sbjct: 2 DYRAEDHVLLDVRGVGYLVYCSDRTLQALPPVGEHTALYTDLLVREDLLQLFGFTSLVEK 61 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 +W LL VQG+GA+ ++ +L + + +I L + + G+ K A R++ ELK Sbjct: 62 EWHRLLMGVQGIGAKASLAILGTLGVEGVSRAINLGDWNALKAAKGVGPKTAQRVVNELK 121 Query: 130 GKAISLSSVVQQDMSCVNKEQAH----------------ICSMPSFAINAISALVNLGYG 173 KA + ++ + + S A+SAL NLGY Sbjct: 122 DKAPQVMAMGAGAATAPMPAPDDQDEVIETPRAAAAPTPARASQSAQAEALSALSNLGYA 181 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A +AV A+ +IR AL+ ++ Sbjct: 182 PGEAASAVAQAADTAPE-AETPALIRAALKLLA 213 >gi|308187172|ref|YP_003931303.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans C9-1] gi|308057682|gb|ADO09854.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans C9-1] Length = 167 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 4/168 (2%) Query: 38 LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97 + ++ +F +R+D LFGF S +R F L V GVG ++A+ +LS ++A + Sbjct: 1 MPELQHEAVIFTHFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQ 60 Query: 98 LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSM 156 V ++ + + ++PG+ K A R++ E+K + + + D + + Sbjct: 61 FVTAVEKEEIASLVKLPGVGKKTAERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAEPET 120 Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A++ALV+LGY +A+ + V + + AD +IR ALRA Sbjct: 121 NDAESEAVAALVSLGYKPQEASRMISKVGRPD---ADCETLIREALRA 165 >gi|313884201|ref|ZP_07817967.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola ACS-139-V-Col8] gi|312620648|gb|EFR32071.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola ACS-139-V-Col8] Length = 201 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + ++ Y+++ G+ Y IY + + + +++E +R+D + L Sbjct: 1 MYEYIQGILSQIHPTYLVVTASGLAYKIY-SPNAYAWNRHLNEEVQVYLELVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL V +G + A+ +L+ T LV++I QN + + PG+ K Sbjct: 60 YGFKDMQEKELFNLLNRVSNIGPKSALSILALNDHTGLVQAIESQNVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK L V D + + Q S + AL LGY Q + A Sbjct: 120 AQQMILDLQGK---LGDFVANDGAELAPSQQASSSNQAQFDEVAEALAGLGYSQREI-KA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ A + + A + + Sbjct: 176 IAKPMA-LQSFASTQEALSFAFKLL 199 >gi|163846991|ref|YP_001635035.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus J-10-fl] gi|222524813|ref|YP_002569284.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl] gi|189045746|sp|A9WA87|RUVA_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766952|sp|B9LCT8|RUVA_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163668280|gb|ABY34646.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus J-10-fl] gi|222448692|gb|ACM52958.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl] Length = 195 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 17/209 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I+ + D+++++ GV +IY P TL+ +G+IG L+ +R+D + L Sbjct: 1 MIASIRGIIQSIGIDHLIVETGGVGLLIYAPRSTLNAVGQIGSETFLYTLLIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++A+ +LS + E+ +SI + +A++PGI K Sbjct: 61 YGFSDPAQRNLFEQLIGVSGVGPKIALNLLSSGSPDEIQKSIAGGDIARLARVPGIGKKT 120 Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ EL+GK LS ++S +++E I L++LGY +A Sbjct: 121 AERIVLELRGKIDLRQLSGTTPGNVSTLDRELTDI-------------LISLGYSATEAA 167 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207 A+ ++ + +RLALR Sbjct: 168 AAIAALPGDAPP--TLEERLRLALRYFGS 194 >gi|237785621|ref|YP_002906326.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|259495637|sp|C4LIX8|RUVA_CORK4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|237758533|gb|ACR17783.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 207 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +YV+I+ GV Y L L + G+ + V ++R D I L Sbjct: 1 MIDSLHGEVLHVGLNYVVIECSGVGYRATASPSLLGTL-RKGEDARILVTMNVRDDGIDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F SD RQ F +L+ V GVG AM + S E I ++ + + GI + Sbjct: 60 YAFESDEARQMFAMLRKVSGVGPTSAMAICSIFKPDEFARIITDEDDAELRNVKGIGKRT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LK K S + ALV LG+ + QA Sbjct: 120 AERIIVDLKSKVAVFDSGDSASEPQSGVGGNSEAEVDSGVVGTVTQALVELGFPEKQAEK 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 S + + S+I++ ALR++S Sbjct: 180 TATSAAAEGGS---VSEILKRALRSMSS 204 >gi|317495143|ref|ZP_07953513.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424] gi|316914565|gb|EFV36041.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424] Length = 192 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + ++ID G+ Y I L + +++ +R+D L Sbjct: 1 MYAYIKGKISEINPTNIVIDNNGIGYEITVANPYEYQL---NEEKQIYISQQVREDSNTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q+ + + PGI K Sbjct: 58 YGFLTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDVNYLTKFPGIGKKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK D + + + ++ + +A+ AL LGY + Sbjct: 118 AQQIILDLQGKI---------DFNTAANKTESLANL--YIKDALLALEALGYSTKELAKI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K E + DD ++ L+ + Sbjct: 167 ESRLAKFEFSAVDD--YVKQGLKLL 189 >gi|322390453|ref|ZP_08063973.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 903] gi|321142852|gb|EFX38310.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 903] Length = 197 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVQVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +A + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|296875591|ref|ZP_06899662.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 15912] gi|296433388|gb|EFH19164.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 15912] Length = 197 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVQVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +A + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + +D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|229824009|ref|ZP_04450078.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271] gi|229786363|gb|EEP22477.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271] Length = 197 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + + +++I GV Y + C G++ VE +R+D + L Sbjct: 3 MYEFIQGELVQIQPLHLVISANGVGYRLLC-ANPYRWQGELHQQVLCPVELVVREDAMTL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F L V G+G + A+ +L+ L+++I +S + + PG+ K Sbjct: 62 YGFRDQQEKQLFNTLLKVSGIGPKSALSILALDDHVGLIQAIDSGDSTYLTKFPGVGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L G D + QA A+ AL LGY + Sbjct: 122 AQQMILDLSGNL---------DFQAHAQTQASAPVSQQHLEEALEALAGLGYSAKEIKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +E + +++ A + + Sbjct: 173 EKPL--QEAGLNSTQEMLSAAFKLL 195 >gi|312866920|ref|ZP_07727133.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis F0405] gi|311097703|gb|EFQ55934.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis F0405] Length = 197 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVHVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +A + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + +D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|254451002|ref|ZP_05064439.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 238] gi|198265408|gb|EDY89678.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 238] Length = 231 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 24/229 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G +E D+VLIDV+GV YI++ R ++ L ++G+ +L+ + +R+D ++L Sbjct: 1 MIGRIAGRLEYRAIDHVLIDVKGVGYIVFVSDRVMATLPRVGEGVSLYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + SI + + +A G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWAAVATAKGVGPKT 120 Query: 121 ASRIMTELKGKAISL-----------------------SSVVQQDMSCVNKEQAHICSMP 157 A +++ +LK KA + + + V++ Sbjct: 121 AKKVILDLKDKAHGVMAMAGTAAGAAPAAGGGASVSADAETDTDMHAVVDRYDGTAAGNG 180 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + +SAL NLGYG A A V+ E + AD + +IR AL+ ++ Sbjct: 181 AAQSETLSALSNLGYGPSDAAGA-VAQAAVENDGADTATLIRAALKLLA 228 >gi|239932397|ref|ZP_04689350.1| Holliday junction DNA helicase RuvA [Streptomyces ghanaensis ATCC 14672] gi|291440764|ref|ZP_06580154.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291343659|gb|EFE70615.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 201 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RVGRPAKLHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177 A +++ ELK + V A + + +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAAGAPAAAGWRDQLHAALIGLGYATREADEA 169 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + +++ AL+ ++ Sbjct: 170 VAAVAPQAEAAGGTPRVGPLLKAALQTLN 198 >gi|117928551|ref|YP_873102.1| Holliday junction DNA helicase subunit RuvA [Acidothermus cellulolyticus 11B] gi|166229623|sp|A0LUK6|RUVA_ACIC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117649014|gb|ABK53116.1| Holliday junction DNA helicase subunit RuvA [Acidothermus cellulolyticus 11B] Length = 196 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 18/208 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D V+++V G + T++ ++G+ +R+D + L Sbjct: 1 MISFVSGRVAAVTPDSVIVEVGGFGVQLLATPATIAR-ARVGERARFATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F LLQ+ GVG R+A+ +L + T L ++ ++ K +A +PGI K Sbjct: 60 YGFADDDERTVFELLQTASGVGPRLALAMLGVHSPTALRAAVATEDVKALALVPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-LVNLGYGQDQATT 179 A RI+ ELK + + S+ + S +A+ A L+NLGY QA Sbjct: 120 AQRIILELKDRLGTPSTAAAESTSG--------------WRDAVHAGLLNLGYTARQADE 165 Query: 180 AVVSVLKKEKNIA--DDSQIIRLALRAI 205 A+ ++ + + A D + +RLAL + Sbjct: 166 AIAAIAGELDDSAAVDTATALRLALATL 193 >gi|332300396|ref|YP_004442317.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas asaccharolytica DSM 20707] gi|332177459|gb|AEE13149.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas asaccharolytica DSM 20707] Length = 202 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58 MI ++G I+ L +D GV Y + + T L + L++ MRQ ++ Sbjct: 1 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60 Query: 59 -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++ F L +V GVG A +LS + EL E I + K + + GI Sbjct: 61 CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LKGK + + + A A AISAL LG+ + Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEVNV 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + + Q+I+ AL + Sbjct: 176 RKVVKQIMSVKPDTP-VEQVIKQALAKL 202 >gi|76789238|ref|YP_328324.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis A/HAR-13] gi|90134759|sp|Q3KLJ6|RUVA_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76167768|gb|AAX50776.1| RuvA [Chlamydia trachomatis A/HAR-13] Length = 200 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +++ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAEKECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + + + + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|88808434|ref|ZP_01123944.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 7805] gi|88787422|gb|EAR18579.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 7805] Length = 215 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 8/213 (3%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G +E V+I GV Y + R S G CT +V R+D Sbjct: 1 MIGWLQGERIQSWEQGGRRGVVIACGGVGYEVQLTSRDQSRQMD-GTSCTFWVHQVQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF +R F L V GVG ++A+ +L ELV +I+ + K + Q G+ Sbjct: 60 GSTLYGFCEQQERDLFRTLVGVNGVGPQMALALLDCCRVEELVAAIVDGDLKRLTQAQGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVNLGYGQD 175 + A RI EL+ + + + + + +S V++ + ++ + L LGY Sbjct: 120 GKRTAERIAVELRDRLGAWAPLQEPSLSLVDRSDVKEIPLGETSLRELQITLETLGYEDL 179 Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206 + A+ +V D +R +L+ +S Sbjct: 180 EIRRAMRAVATGTDVPAEDDGDAWLRASLKWLS 212 >gi|228471297|ref|ZP_04056103.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3] gi|228306939|gb|EEK16037.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3] Length = 202 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58 MI ++G I+ L +D GV Y + + T L + L++ MRQ ++ Sbjct: 1 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60 Query: 59 -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++ F L +V GVG A +LS + EL E I + K + + GI Sbjct: 61 CDLYGFYTREEQALFAKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LKGK + + + A A AISAL LG+ + Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEANV 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + + Q+I+ AL + Sbjct: 176 RKVVKQIMTVKPDTP-VEQVIKQALAQL 202 >gi|227504981|ref|ZP_03935030.1| Holliday junction DNA helicase motor protein [Corynebacterium striatum ATCC 6940] gi|227198431|gb|EEI78479.1| Holliday junction DNA helicase motor protein [Corynebacterium striatum ATCC 6940] Length = 194 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 7/196 (3%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 + D+ +I+ GV Y TL L + GD T+ +++D + L+GF +D DR Sbjct: 2 LSISLDHAVIECAGVGYKFLATPVTLGTL-RRGDEATVLTSMVVKEDSMTLYGFSNDEDR 60 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F +LQ+V G+G ++A+ LS + ++L ++I ++K + IPG+ ++A R+ EL+ Sbjct: 61 DMFHVLQTVSGLGPKLALAALSVMGPSQLAQAISSGDAKTLQTIPGVGKRMAERLALELR 120 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 K + + Q +E + + + ALV LG+ A V ++ +E Sbjct: 121 DKVSAFAPQAQP-----GQEASAAVAHGPVVDQVVEALVGLGFTDKAARPVVEGIVAEE- 174 Query: 190 NIADDSQIIRLALRAI 205 + A+ + ++R AL + Sbjct: 175 SAAETAVVLRGALAQL 190 >gi|313886562|ref|ZP_07820276.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica PR426713P-I] gi|312923972|gb|EFR34767.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica PR426713P-I] Length = 202 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHMRQDQI 58 MI ++G I+ L +D GV Y + + T L + L++ MRQ ++ Sbjct: 1 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLEREAPVRLWITEVMRQGEV 60 Query: 59 -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++ F L +V GVG A +LS + EL E I + K + + GI Sbjct: 61 CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LKGK + + + A A AISAL LG+ + Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEVNV 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + + Q+I+ AL + Sbjct: 176 RKVVKQIMSVKPDTP-VEQVIKQALAKL 202 >gi|306834544|ref|ZP_07467657.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus bovis ATCC 700338] gi|304423346|gb|EFM26499.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus bovis ATCC 700338] Length = 197 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YI+ S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVIEAGGLGYIVNV-ANPYSFSDLVNQEVQIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +S K + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVDVSVEN-------GKASQTKTATNEQLEEAMEALLALGYKAAE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A Q I+ +L+ + Sbjct: 172 IRKFFEGTNETA--EQYIKSSLKML 194 >gi|310658621|ref|YP_003936342.1| FuvABC resolvasome regulatory subunit [Clostridium sticklandii DSM 519] gi|308825399|emb|CBH21437.1| component of RuvABC resolvasome, regulatory subunit [Clostridium sticklandii] Length = 199 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG +E D ++++ G+ Y I + T+ + IG+ + + +R+D I+L Sbjct: 1 MLNYIKGILEEKAVDKIVVENNGIGYEILTSLNTIEEIN-IGEKIKIHTKLLVREDDIQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + F LL SV +G ++A+ LS + ++ I+ + + +IPG+ K Sbjct: 60 VGFTSKEELSIFNLLTSVSKIGPKLALSSLSVYKSEKIKLMIVESDINSLVKIPGMGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K V D+ ++ Q +I AI ALV+LG+ + ++ Sbjct: 120 AERVILELKDKI---GVVYFTDLESNSEPQLNIG------HQAIEALVSLGFSKKESEDV 170 Query: 181 VVSVLKKEKNIAD---DSQIIRLAL 202 V ++K N + +I+ AL Sbjct: 171 VKKIIKSVGNDTESLHVETLIKNAL 195 >gi|212696229|ref|ZP_03304357.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM 7454] gi|212676858|gb|EEB36465.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM 7454] Length = 197 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ + E+ +I+ + Y+I T+ L +I + +F + ++R+D I L Sbjct: 1 MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F LL SV +G + A+ VLS + ++ +I+ + + + GI K Sbjct: 60 FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKFAIVNNDIDTLTKAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ +S + + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMAINDDISIS-----EDSFTTSNKEIDVAREALINLGYQRNSIDKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + ++ +II+ AL+ + Sbjct: 175 LTTLKDSDLSL---EEIIKEALKKM 196 >gi|332203341|gb|EGJ17408.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA47368] Length = 197 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVAV------KASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|295425862|ref|ZP_06818542.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus amylolyticus DSM 11664] gi|295064465|gb|EFG55393.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus amylolyticus DSM 11664] Length = 197 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 11/194 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59 M + G I + Y+++DV GV Y ++ P G ++VE + + Sbjct: 1 MFEYLDGTIAEISPSYIVVDVNGVGYKVFSPTPFAYHQ---GQKAKVYVEQNFSDNNGFT 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + F+ L SV G+G + A+ +++ + L E+I K + + PG+ K Sbjct: 58 LYGFQDKNAKGLFLKLLSVSGIGPKSALAIMAAEDSDSLAEAIEQGEVKYLTRFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 AS+I+ +LKGK ++ +++ A + +A+ AL+ LGY Q + Sbjct: 118 TASQIVLDLKGKLGDY-------VNRLDRTVADNEEISPELHDALLALIALGYTQKEVNR 170 Query: 180 AVVSVLKKEKNIAD 193 + K + + AD Sbjct: 171 ITPKLEKIDTDSAD 184 >gi|326407801|gb|ADZ64872.1| holliday junction DNA helicase RuvA [Lactococcus lactis subsp. lactis CV56] Length = 197 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++IDV G+ Y+I + + ++V +R+D L Sbjct: 1 MFEYLNGKLVKISPTNIVIDVAGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L SV G+G + A+ +++ L+ +I + K + + PG+ K Sbjct: 60 YGFVNEAEKALFLRLISVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +V + + AI AL LGY + Sbjct: 120 AIQMVLDLAGKFDATGTVGISLLDAGPAGNLAL-------EEAIEALQALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L +E + + I+ AL+ + Sbjct: 172 IEKKLAQETGLTS-EEYIKSALKLM 195 >gi|222151527|ref|YP_002560683.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus JCSC5402] gi|254766967|sp|B9E719|RUVA_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222120652|dbj|BAH17987.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus JCSC5402] Length = 193 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 14/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + +++I+V G+ Y P ++ TL + +R+D L Sbjct: 1 MYAYLKGKIMTILPTHLVIEVSGIGYECLTP-NPYRFNHQLDQMITLHTQLVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L V G+G + A+ +L+ T E++++I ++ + + PGI K Sbjct: 60 YGFKDEEEKAMFNALNKVTGIGPKSALAILATSTPQEIIKAIESESESYLIKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++ + + A+ A LGY + + T Sbjct: 120 ARQIILDLKGKL-----------TITDESELFKEVNDTLLNEALLAFEALGYSKREITKI 168 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + KK+ + D + ++ L+ Sbjct: 169 EKELKKKQFSTVD--EYVKQGLQ 189 >gi|125625244|ref|YP_001033727.1| Holliday junction DNA helicase motor protein [Lactococcus lactis subsp. cremoris MG1363] gi|166230561|sp|A2RP07|RUVA_LACLM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|124494052|emb|CAL99052.1| holliday junction DNA helicase ruvA [Lactococcus lactis subsp. cremoris MG1363] gi|300072054|gb|ADJ61454.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp. cremoris NZ9000] Length = 197 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++ID+ G+ Y+I + + ++V +R+D L Sbjct: 1 MFEYLNGKLVKISPTNIVIDLSGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L SV G+G + A+ +++ L+ +I + K + + PG+ K Sbjct: 60 YGFVNESEKALFLRLISVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +V + + AI AL LGY + Sbjct: 120 AMQMVLDLAGKFDATGAVGISLLDAAPASNLAL-------EEAIEALQALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L +E + + I+ AL+ + Sbjct: 172 IEKKLAQEAGLTS-EEYIKSALKLM 195 >gi|319947801|ref|ZP_08021995.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4] gi|319438525|gb|EFV93451.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4] Length = 199 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + D +++ GV +++ L+ L + G L E +R+D + L Sbjct: 1 MIASIRGTVAEIGLDRCVVETGGVGVLVHATPAALAGL-RRGAEGMLHTELVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S RQ F+ +Q+V GVG R+A+ +++ + L+ ++ + K + +PG+ + Sbjct: 60 YGFDSVDARQLFLTVQTVSGVGPRLALAIVATLEPEALIRALGTGDVKALTLVPGVGKRT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + N A AL LG+ +A Sbjct: 120 AERMVLELKDKVGPVPDGDAASSVVGNGRA-------PAATEVADALEGLGFSAAEAEKT 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +VL + ++ D +Q +RLAL+++ Sbjct: 173 ATAVLDSQPDL-DPAQALRLALKSL 196 >gi|215427996|ref|ZP_03425915.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T92] gi|289751217|ref|ZP_06510595.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T92] gi|289691804|gb|EFD59233.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T92] Length = 196 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L V GVG R+AM L+ A L + + N + ++PGI + Sbjct: 60 YGFPDGETRDLFLTLLLVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K A + + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +VL + S + R AL + Sbjct: 169 TDTVLAANHDATTSSAL-RSALSLL 192 >gi|298529992|ref|ZP_07017394.1| Holliday junction DNA helicase RuvA [Desulfonatronospira thiodismutans ASO3-1] gi|298509366|gb|EFI33270.1| Holliday junction DNA helicase RuvA [Desulfonatronospira thiodismutans ASO3-1] Length = 203 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + L+ G+ Y ++ L + G+ L +R+D + Sbjct: 1 MIALIRGTLVSFNDKSCLVMTASGLGYEVHVSAMGLQNMPGQGEELELHTSMVVREDALD 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L + +G + A+ +L + +++ + I ++ + Q+PGI K Sbjct: 61 LYGFFTRDERETFNVLLNAPKLGPKTALAILGIFSPSQIQKIINTEDEAALTQVPGIGSK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ +LK + +S + + ++ L +LGY + T Sbjct: 121 TARRLILDLKDRLGFISPQHEDPRPAPGPR--------GVRQDVLAGLTSLGYSAAEVTP 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + VL+KE ++ D S IR L+ Sbjct: 173 LLDEVLEKEPDL-DVSSAIRAVLKE 196 >gi|309775420|ref|ZP_07670423.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 3_1_53] gi|308916809|gb|EFP62546.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 3_1_53] Length = 193 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I D ++I+ G+ Y +Y L L+ H+R+D I L Sbjct: 1 MIAFIKGIIHSYSNDSLIIENNGIGYRVYVSNPMAVRLNA---EVILYTYQHVREDAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L SV+GVG + A+G+L A ++ +I + KV+ +PGI K Sbjct: 58 FGFPTMEERDLFLQLISVKGVGPKTALGMLGVCPAKNMIAAIENNDVKVLKGLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + ++ ++A+ AL LGY + + Sbjct: 118 ASQIVLDLKGKLVEEVTELE-------------IKENEQLLDALEALKALGYKNAELNSI 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +E +D Q IR L ++ Sbjct: 165 KKELSTQEPMTSD--QYIRKGLGILA 188 >gi|116513152|ref|YP_812059.1| Holliday junction DNA helicase motor protein [Lactococcus lactis subsp. cremoris SK11] gi|123025083|sp|Q02VS6|RUVA_LACLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116108806|gb|ABJ73946.1| Holliday junction DNA helicase subunit RuvA [Lactococcus lactis subsp. cremoris SK11] Length = 197 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 93/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++ID+ G+ Y+I + + ++V +R+D L Sbjct: 1 MFEYLNGKLVKISPTNIVIDLSGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L SV G+G + A+ +++ L+ +I + K + + PG+ K Sbjct: 60 YGFVNESEKALFLRLISVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +V + + AI AL LGY + Sbjct: 120 AMQMVLDLAGKFDATGAVGISLLDAAPAGNLAL-------EEAIEALQALGYKATE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L++E + + I+ AL+ + Sbjct: 172 IEKKLEQEAGLTS-EEYIKSALKLM 195 >gi|288906381|ref|YP_003431603.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34] gi|306832428|ref|ZP_07465581.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979395|ref|YP_004289111.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733107|emb|CBI14688.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34] gi|304425468|gb|EFM28587.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179323|emb|CBZ49367.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 197 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YI+ S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVVEAGGLGYIVNV-ANPYSFSDLVNQEVQIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +S K + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVDVSVEN-------GKASQTKTATNEQLEEAMEALLALGYKAAE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A Q I+ +L+ + Sbjct: 172 IRKFFEGTNETA--EQYIKSSLKML 194 >gi|184201011|ref|YP_001855218.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201] gi|229560091|sp|B2GIL9|RUVA_KOCRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183581241|dbj|BAG29712.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201] Length = 213 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 14/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59 MI + G + + +++V G ++ RTLS L ++G L R+D Sbjct: 1 MIASVTGEVAFVGATLAVVEVSGFGIEVHASPRTLSGL-RVGATTRLHTAYIARKDEAPL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF +++ F ++ V GVG R A+ +S + + +I + K +PGI K Sbjct: 60 LFGFAQGDEKEIFTVMLGVSGVGPRTALAAVSVLGPEDARRAIAAGDDKAFTAVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL K + VQ QA+ +P + + AL LG+ + A Sbjct: 120 SARRIVLELADKLVLPEPPVQ---------QANQPQVPVWRDQVVDALTGLGWSEKDAVR 170 Query: 180 AVVSVLKKEKNIAD---DSQIIRLALRAISC 207 + L+ + + D ++I+R L + Sbjct: 171 GIEDALQTQPELGDSGNVAEILRAVLSWLGT 201 >gi|319946048|ref|ZP_08020297.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus australis ATCC 700641] gi|319747856|gb|EFW00101.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus australis ATCC 700641] Length = 197 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQKVQVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +A + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + +D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|227894652|ref|ZP_04012457.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047] gi|227863547|gb|EEJ70968.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047] Length = 195 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV++DV GV Y +Y P K G +++E +R I L Sbjct: 1 MYEYFEGVISVITPSYVVVDVNGVGYKVYSPTPFAY---KQGQKAKVYIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + + S + +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYVARLDRTDSG--------EEISPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 + K + + AD Sbjct: 170 TPKLEKVDADTAD 182 >gi|171778535|ref|ZP_02919662.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282758|gb|EDT48182.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 197 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+V G+ YI+ S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVIEVGGLGYIVNV-ANPYSFSDLMNQDIQVYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +S K + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVDVSVEN-------GKVSQTKAAANEQLEEAMEALLALGYKAAE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A Q I+ +L+ + Sbjct: 172 IRKFFEGTNETA--EQYIKSSLKML 194 >gi|325283106|ref|YP_004255647.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus proteolyticus MRP] gi|324314915|gb|ADY26030.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus proteolyticus MRP] Length = 196 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + ++ G+ Y ++CP TL+ L K G+ L +R+D L Sbjct: 1 MIVYLSGTVREVRTSSAVLQTGGLGYEVFCPQSTLARL-KPGEAAELHTRFVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF Q F L+ V GVG ++ + +LS + + L + I+ ++K+++ + G+ K Sbjct: 60 FGFHDTDSAQLFDLVTGVSGVGPKLGLALLSAMPVSTLAQGILDGDAKLLSSVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + + V A +AI AL+ LG+ + Q T Sbjct: 120 AERLILEVQSKVPAHLAAPSGGSKPVTVTTAG--------ADAIDALMALGFREAQVRTV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L + D +IR L + Sbjct: 172 VAGLLADNPEQSAD-TLIRKGLGQL 195 >gi|255994147|ref|ZP_05427282.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC 49989] gi|255993815|gb|EEU03904.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC 49989] Length = 194 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I E +++D + Y I P+ + +I + ++ E +R+D + L Sbjct: 1 MIKFLRGRIFEKLESCIVLDTGNIGYQINLPLNSPFFTAEISEEVLVYTELIVREDDMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +F LL ++ GVGA+ ++ +LS T EL +I +++ I++ GI K Sbjct: 61 YGFEDFKTLNFFNLLMNINGVGAKASLALLSVSTVDELARAIASKDTAFISRANGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL K S++ + + + A AL++LGY +++A Sbjct: 121 AERIALELSDKVESIAYNLPSNNEVT-------SVVSGNKAEACEALMSLGYNKNEA--- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++VLK D IR AL + Sbjct: 171 -MNVLKSLDEGLDTQSYIRKALTLL 194 >gi|160947139|ref|ZP_02094306.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270] gi|158446273|gb|EDP23268.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270] Length = 200 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G ++ +Y DY++ID G+ Y I+ TL + +GD+ T++ + +++D + L Sbjct: 1 MYEYISGELKFIYNDYIVIDNGGIGYKIFTSNNTLFNV-TVGDYYTIYTDYIVKEDYVAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV +G +VA G+LS ++ L +I+ ++ +A G+ K Sbjct: 60 FGFKTMDELSMFKLLVSVNSIGPKVACGILSSMSVDSLKLTIVNGDAVALATAKGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK K S+ S+ +D+S + AL+NLG+ ++ Sbjct: 120 AQKIILELKDKI-SIDSISSKDISGMEASTLDSGKDLEKRELVSDALINLGFMKNDIERF 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ E I II+L+++ + Sbjct: 179 LSSINIDEMEI---EDIIKLSMKKL 200 >gi|315037644|ref|YP_004031212.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL 1112] gi|325956129|ref|YP_004286739.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus 30SC] gi|312275777|gb|ADQ58417.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL 1112] gi|325332694|gb|ADZ06602.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus 30SC] gi|327182937|gb|AEA31384.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL 1118] Length = 195 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + Y+++DV GV Y +Y P G +++E +R I L Sbjct: 1 MYEYFEGIISVITPSYIVVDVNGVGYKVYSPTPFAYTQ---GQKAKVYIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D + + + +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKL--------GDYVARLDRKDNDEEISPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 +++ + + AD Sbjct: 170 TPKLIEVDADTAD 182 >gi|282899464|ref|ZP_06307430.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii CS-505] gi|281195621|gb|EFA70552.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii CS-505] Length = 214 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + ++V G+ Y +Y P R + L GD +F +R+ Sbjct: 1 MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVAHIFTHYQIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+G +A+ ++ + ELV++II N+ ++ Q PG Sbjct: 61 ELPILYGFSSPAERDLFRHLLSVTGIGTAMAIALIDTLELPELVQAIISGNTTMLVQTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A R+ ELKGK + ++ P+ L LGY Sbjct: 121 VGKKTAERLCLELKGKLVEWRKSAGFFVATGGPP-------PAILEEVQMTLFALGYTPH 173 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207 + + A+ + + + I+ A+ +S Sbjct: 174 EVSHALHVISEDIGLPKNSYPEDWIKQAIAHLSS 207 >gi|228475171|ref|ZP_04059897.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119] gi|314936245|ref|ZP_07843592.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp. hominis C80] gi|228270782|gb|EEK12184.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119] gi|313654864|gb|EFS18609.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp. hominis C80] Length = 201 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M IKG++ L+ +++++ G+ Y I P + + C +F +R+D Sbjct: 1 MYAYIKGHLSQLFPTHIVVETSSGIGYEIQTP-NSYRFQKYLNQECKVFTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+S+ +++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 LYGFISEEEKEMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK + ++ + + + + + A+ AL LGY + + + Sbjct: 120 TARQIVLDLKGKVK----ITEETSETLLQVEGQVEENDNIIKEALLALAALGYSKRELSK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V VL K +I + +++ L+ + Sbjct: 176 -VEKVLNK-TSIHSVDEAVKIGLKTL 199 >gi|220910036|ref|YP_002485347.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425] gi|219866647|gb|ACL46986.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425] Length = 207 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G I G+ + +DV GV Y + R ++ L G+ +F +R+D Sbjct: 1 MIGYLQGRIAGVQRGGNRTLLTLDVNGVGYDLQILPRLVNKLPPEGETLQMFTHLQVRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q+ L+GF +R F L SV GVG ++A+ +L + ELV++I+ N++ +++ PG+ Sbjct: 61 QMILYGFAITAERDLFRQLISVSGVGPQLALALLEGMELAELVQAIVSGNTRTLSRTPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A RI ELK K A + L+ LGY + Sbjct: 121 GSKTAERIALELKTKLAEWRQQSGLTTVPSAGPIAAV------REEVELTLLALGYSSTE 174 Query: 177 ATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206 A+ +V + D IR A+ +S Sbjct: 175 VMQALQAVGENTALAKAGDAEAWIRAAIAWLS 206 >gi|325846722|ref|ZP_08169637.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481480|gb|EGC84521.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 197 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ + E+ +I+ + Y+I T+ L +I + +F + ++R+D I L Sbjct: 1 MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F LL SV +G + A+ VLS + ++ +I+ + + + GI K Sbjct: 60 FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ +S + + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMAINDDISIS-----EDSFTTSNKEIDVAREALINLGYQRNSIDKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + ++ +II+ AL+ + Sbjct: 175 LTTLKDSDLSL---EEIIKEALKKM 196 >gi|255311319|ref|ZP_05353889.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276] gi|255317620|ref|ZP_05358866.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276s] gi|296436034|gb|ADH18208.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9768] gi|296437895|gb|ADH20056.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11074] gi|297140395|gb|ADH97153.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9301] Length = 200 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSFRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + + + + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLY------LEEPVVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|260435378|ref|ZP_05789348.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109] gi|260413252|gb|EEX06548.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109] Length = 222 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 12/214 (5%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + VL+ GV Y ++ R L GD L++ R+D Sbjct: 9 MIGWLQGRPMECWTQGNRSGVLLLCGGVGYEVHLTERHQQNLPADGD-LNLWIHQVQRED 67 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF +R F LL SV GVG + + ++ ELVE+I + + + + GI Sbjct: 68 GSSLYGFPLRQERDLFRLLISVSGVGPQAGLALMQECKPQELVEAISSGDLRRLCKAQGI 127 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ S+++ D + E MP+ + + L LGY + Sbjct: 128 GKRTAERLAVELR---ASIAAFAGVDPAPSLAEGVSSEQMPASGADVEATLSMLGYDDLE 184 Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206 A+ ++ + D +R L+ +S Sbjct: 185 IRRAIRAIAEGADGQPPAGDDQDAWLRGCLQWLS 218 >gi|312143984|ref|YP_003995430.1| Holliday junction DNA helicase RuvA [Halanaerobium sp. 'sapolanicus'] gi|311904635|gb|ADQ15076.1| Holliday junction DNA helicase RuvA [Halanaerobium sp. 'sapolanicus'] Length = 200 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L +IDV GV Y + L +GD L++ T++R+D ++L Sbjct: 1 MIGFLEGELIYLEAGQAIIDVNGVGYE--TELAGFDDLPTVGDDIELYIYTYVREDALKL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F S D++ F +L +V G+G + + +++ + A + +I+ +N V+ +I GI K Sbjct: 59 FAFPSRKDKELFEILITVNGIGPKAGLNIINTMPADRFISAIMQENELVLKKISGIGPKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + S + + + AL LGY + A Sbjct: 119 AQRLILELQGKLEDFVYLKSGQKSSTTSK-----IENEDRQDVVDALTALGYKISEINKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ S+ IR L + Sbjct: 174 LRKI--SFEDGIAVSEKIRQVLSYL 196 >gi|324992648|gb|EGC24569.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK405] gi|324995823|gb|EGC27734.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK678] gi|327460051|gb|EGF06390.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1] gi|327488641|gb|EGF20441.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1058] Length = 218 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGPSESKAPVQTMDNQEL-------EEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|78044333|ref|YP_360355.1| Holliday junction DNA helicase RuvA [Carboxydothermus hydrogenoformans Z-2901] gi|90134706|sp|Q3ABX9|RUVA_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77996448|gb|ABB15347.1| Holliday junction DNA helicase RuvA [Carboxydothermus hydrogenoformans Z-2901] Length = 195 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D V++DV G+ + + R L L + ++ +R+D L Sbjct: 1 MIAVLKGKVLDKTLDSVVVDVNGIGFKVAVLPRELGSLN-LNSEVVMYTSLQVREDGWFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R++F LL SV G+G + A+ +L+ T +L I ++ K + ++PG+ K Sbjct: 60 YGFSDEETRKFFDLLLSVSGIGPKAALAILNEFTPEKLNWVIANKDEKALTKVPGVGKKN 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + + + + + L++LG +A Sbjct: 120 AQRLFLELKDKI---------GYTSFTSNEESVENFQDLWGDVYKGLLSLGLSAAEAREI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + KK ++ + I LALR ++ Sbjct: 171 LGKIDKK--SVKTPEEGIALALRFLN 194 >gi|327463456|gb|EGF09775.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1057] Length = 218 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVVADGPAESKVPVQTADNQEL-------EEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|312870745|ref|ZP_07730852.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 3008A-a] gi|311093757|gb|EFQ52094.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 3008A-a] Length = 194 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L+K N + D I+ AL+ + Sbjct: 168 IKPKLEKLPNQSADH-YIKEALKLL 191 >gi|332188826|ref|ZP_08390535.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17] gi|332011136|gb|EGI53232.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17] Length = 199 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG ++ D+ +IDV GV Y++ RTLS +G +G+ L E + +D IRL Sbjct: 1 MIAHLKGRLDSTGIDHAVIDVGGVGYLVGASARTLSVIGSVGEAAMLHTEMLVSEDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R WF LL VQGVG+RVA+ +LS + +L+ +I + ++A+ G+ K+ Sbjct: 61 VGFASADERDWFRLLTGVQGVGSRVALAILSALEPADLMRAIASGDKAMVARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + A + +SAL+NLG+ +A+ A Sbjct: 121 AQRIVMELKDKVGGIVLAPGSGGGAAATVGAGADA--------VSALLNLGFRPAEASAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V S ++ A ++RLALR Sbjct: 173 VASAEEELGASASLDALVRLALRK 196 >gi|308234389|ref|ZP_07665126.1| Holliday junction DNA helicase subunit RuvA [Atopobium vaginae DSM 15829] gi|328944205|ref|ZP_08241669.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium vaginae DSM 15829] gi|327491124|gb|EGF22899.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium vaginae DSM 15829] Length = 214 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 5/210 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + ++ + V++DVQGV Y + T + L G TL V ++++ + Sbjct: 1 MIVQLTGTLVEVFPNSVVLDVQGVGYELGISANTAANLPACGQTAVTLLVRMIVKENAME 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L + GVG ++A+ VLS + ++L + ++ +AQ+PG+ K Sbjct: 61 LYGFSSRQERNAFDRLIDISGVGPKLALAVLSTYSLSDLATIALSEDVTRMAQVPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ EL + + + S +A SAL+ +G+ + Sbjct: 121 KAQRLLIELADVFAKDAELRILASAEQKTSGAREQAPQHSVLDDAQSALLAMGFTPQEVE 180 Query: 179 TAVVSVLKKEKNIADD---SQIIRLALRAI 205 A+ KKE N +I AL+ + Sbjct: 181 LALKPYDKKECNDNPSLTAQTVITQALQRL 210 >gi|212704638|ref|ZP_03312766.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098] gi|212672037|gb|EEB32520.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098] Length = 203 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + +++ GV Y + P T++ L G+ L+ +R+D + Sbjct: 1 MIAYLEGLLAETWGTSCIVVTRGGVGYELDLPAHTMASLPGRGESVALYTSLVVREDAQQ 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F +L ++ VGAR A+ +LS +L ++ ++ + ++ GI K Sbjct: 61 LFGFATFEERQVFEVLLTISKVGARTALAILSLYRPDDLRRIVLEEDVDALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A + ELK K + V Q + N S + + L NLGY +D+ Sbjct: 121 TAQHVFLELKYKL-KVEDVPQAAVLAPNGRPG------SVFRDVLDGLSNLGYSEDECAP 173 Query: 180 AVVSVLKKEKNI 191 V ++L +E ++ Sbjct: 174 VVKNILLQEPDL 185 >gi|169829378|ref|YP_001699536.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus sphaericus C3-41] gi|229560099|sp|B1HVA4|RUVA_LYSSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|168993866|gb|ACA41406.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus sphaericus C3-41] Length = 206 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 3/197 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + +Y++++ +G+ + + P + ++V H+R+D L Sbjct: 1 MYDYLKGLITRITPEYIVLEQKGIGWQLNTPNPFAFRTSAMEQ--QIYVHLHVREDAQVL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R+ F L V G+G + A+ +L+ +++ +I ++ + + PG+ K Sbjct: 59 YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDETFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK SL ++ + + AI AL LGY + + Sbjct: 119 ARQMILDLKGKLGSLLETIELPSTEDELPLFGVHPYKHELEEAILALAALGYSEKELEK- 177 Query: 181 VVSVLKKEKNIADDSQI 197 + +L+ + Sbjct: 178 IRPLLEDNDKLETTDAY 194 >gi|300088237|ref|YP_003758759.1| Holliday junction DNA helicase RuvA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527970|gb|ADJ26438.1| Holliday junction DNA helicase RuvA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 195 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG L D+V+++V GV Y ++ TLS + G+ L+ +R+D + L Sbjct: 1 MISTLKGKAALLGADWVIVEVGGVGYKVFVSTATLSQIQNAGE-IRLYTHLQVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + F + V G+GAR+A+ +LS +L I N+ ++ +PG+ K Sbjct: 60 FGFLTFEELGIFETMLEVSGIGARLALALLSAFKPEDLANIIATGNADMLCTVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K N A + + ++AL LGY +A A Sbjct: 120 ASRIVLELKDKVAR------------NWSAAPAGEGGAVDNDVMAALTALGYSGAEAARA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 VV++ + K + IRLAL +S Sbjct: 168 VVALPRDGK--LTLEEKIRLALAGLS 191 >gi|325695327|gb|EGD37227.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK150] gi|332365307|gb|EGJ43070.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1059] Length = 218 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 97/206 (47%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|172058107|ref|YP_001814567.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum 255-15] gi|229560031|sp|B1YJR2|RUVA_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171990628|gb|ACB61550.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum 255-15] Length = 197 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + ++V I+V G+ Y I P G + ++ ++R+DQ L Sbjct: 1 MIEFVRGEVAYVCAEFVTIEVGGIGYKIVAPNPFFYRTGD--EQVIVYTYHYVREDQEVL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+G + ++ +++ LVE+I + + + PG+ K Sbjct: 59 FGFRSRRERALFTKLLGVTGIGPKGSLAIVASGDVDALVEAIEQEKESYLIKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ +LKGK L+ + A + A AL LGY + + Sbjct: 119 AKQMTLDLKGKLAELAPDYIPSEGLFAQGNAEL-------NEACEALTALGYSEREVEK- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ + Q ++ AL+ + Sbjct: 171 VKKALQ--GEVLSTDQYVKRALQLL 193 >gi|282882990|ref|ZP_06291594.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis 315-B] gi|281297197|gb|EFA89689.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis 315-B] Length = 198 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 114/206 (55%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKGNI +YE +++D + Y+I +S L + + +++ +R+D I L Sbjct: 1 MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKL-SLNEELKIYLRLILREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ R F LL +V VG +++M +L + +++L +I+ +++ ++ + PG+ K Sbjct: 60 YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K S D+S ++ + A+ AL++LGY + +A A Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP----ALEALLSLGYNEYEAKIA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V + + + S+IIR AL+ ++ Sbjct: 176 LRNVDQNQ----ELSEIIRQALKVMA 197 >gi|300813213|ref|ZP_07093581.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512666|gb|EFK39798.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 198 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 114/206 (55%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKGNI +YE +++D + Y+I +S L + + +++ +R+D I L Sbjct: 1 MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKL-SLNEELKIYLRLILREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ R F LL +V VG +++M +L + +++L +I+ +++ ++ + PG+ K Sbjct: 60 YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K S D+S ++ + A+ AL++LGY + +A A Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP----ALEALLSLGYNEYEAKIA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V + + + S+IIR AL+ ++ Sbjct: 176 LRNVDQSQ----ELSEIIRQALKVMA 197 >gi|87124238|ref|ZP_01080087.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9917] gi|86167810|gb|EAQ69068.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9917] Length = 216 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 8/213 (3%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G+ +E LI GV Y + R ++ + TL++ ++D Sbjct: 1 MIGWLQGDRIDTWEQGSRRGWLIACAGVGYEVQLSERHMAD-PEQQRQVTLWIHQVQKED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F L SV GVG +V + +L+ A ELV++I+ + + ++Q G+ Sbjct: 60 GSSLFGFPERRERDLFRQLISVNGVGPQVGLALLACWRADELVDAILDGDVRRLSQAQGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQD 175 + A R+ EL+ + + + +S V+++ H + L +LGY Sbjct: 120 GKRTAERLAVELRDRLAAGRHQMDAPLSLVDRQDLHALPIAADPLQDLQLTLTSLGYEDL 179 Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206 + A+ +V D +R LR +S Sbjct: 180 EIRRALKAVATGATSPAATDGEAWLRECLRWLS 212 >gi|323350703|ref|ZP_08086364.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis VMC66] gi|322123123|gb|EFX94814.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis VMC66] Length = 218 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|196232552|ref|ZP_03131404.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus Ellin428] gi|196223314|gb|EDY17832.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus Ellin428] Length = 201 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +V+++V GV Y + P+ + L +G + +R+D L Sbjct: 1 MITFLEGTLAEALPTHVVVNVHGVGYHVQIPLSSYDKLPAVGASIKILTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF+++ +R F LL + V G+G + A+ VLS T T +++ ++ ++A+ GI K Sbjct: 61 YGFMTNAERDLFRLLVTHVSGIGPKTALDVLSGTTVTNFKAAVVAGDAGLLAKTKGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K ++ S + + +A+ L+ LGY Q A Sbjct: 121 TAERIIVELKDKVGIAAAWEAASASHAPTPE------EAKVTDAVLGLIALGYKQVDAHK 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V +K ++R AL+ + Sbjct: 175 AVKQVQEKGGPAMTTEDLVRQALKIL 200 >gi|328944741|gb|EGG38902.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1087] Length = 218 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVVADGPAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|302866772|ref|YP_003835409.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC 27029] gi|315503187|ref|YP_004082074.1| holliday junction DNA helicase ruva [Micromonospora sp. L5] gi|302569631|gb|ADL45833.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC 27029] gi|315409806|gb|ADU07923.1| Holliday junction DNA helicase RuvA [Micromonospora sp. L5] Length = 200 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +++V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIASVRGTVTATGPDHAVVEVGGIGLAVQCAPGTLADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +Q F LLQ+ GVG R+A VL+ T + ++I ++ + ++PGI K Sbjct: 60 YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ ALV LG+ QA A Sbjct: 120 AERLVLELRDRVGPV---------PVGADGAAGVTAGAWPEQVRQALVGLGWTAGQAEQA 170 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 V +V + + +++ A+R + Sbjct: 171 VAAVAETVDGETPPVPVLLKQAIRLL 196 >gi|320093778|ref|ZP_08025625.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979279|gb|EFW10775.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 178 str. F0338] Length = 199 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G +E + D V++ GV + + L + GD + +R+D + L Sbjct: 1 MIALLRGVVESIGLDQVVVSAGGVGFGVRVTPAHAQSLTR-GDEAVVHTAMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+G + A+ L+ + +L ++ Q+ + +IPG+ K Sbjct: 60 YGFASADERDVFERLMGVTGIGPKTALAALAVLRPDDLRRAVRDQDIATLQKIPGVGRKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ E+ GK + + + +Q +ALV LG+ + QA A Sbjct: 120 AQRMALEVGGKLGAPAQLPEQGGPAA-------APAGEVEAEVRAALVGLGWSEAQAAKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + +D ++R AL ++ Sbjct: 173 VDALSGQGLGASD---MLRSALVSL 194 >gi|309807405|ref|ZP_07701368.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 01V1-a] gi|312872854|ref|ZP_07732916.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2062A-h1] gi|312873710|ref|ZP_07733755.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2052A-d] gi|325913741|ref|ZP_08176102.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B] gi|308169327|gb|EFO71382.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 01V1-a] gi|311090708|gb|EFQ49107.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2052A-d] gi|311091588|gb|EFQ49970.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2062A-h1] gi|325476941|gb|EGC80092.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B] Length = 194 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIINPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L+K N + D I+ AL+ + Sbjct: 168 IKPKLEKLPNQSAD-LYIKEALKLL 191 >gi|113952944|ref|YP_730832.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311] gi|123031696|sp|Q0I9P0|RUVA_SYNS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113880295|gb|ABI45253.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311] Length = 219 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + ++I GV Y + R L L G CT+++ R D Sbjct: 1 MIGWLRGERIEHWSQGGRQGLVIACAGVGYEVQLASRYLQPLSA-GATCTVWIHQVQRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F +L SV G+G +V + +L +A EL+E+II + + + Q G+ Sbjct: 60 GSSLFGFPDRRERDLFRVLISVNGIGPQVGLALLESCSAAELIEAIIDGDLRRLTQAQGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGY 172 + A R+ EL+ + + S+ D S ++ + + P + L LGY Sbjct: 120 GKRTAERLAVELRDRLGAWSAEKNSDHSDLSLVDRSDLKSLPIEPDPLQDLQLTLSTLGY 179 Query: 173 GQDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 + A+ +V E D +R +LR ++ Sbjct: 180 EDLEIRRAMRAVATGEEVPAANDGDGWLRASLRWLN 215 >gi|324989663|gb|EGC21607.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK353] gi|332363708|gb|EGJ41488.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK49] Length = 218 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNVGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGQAESKAPVQTADNQEL-------EEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|86605208|ref|YP_473971.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab] gi|123765632|sp|Q2JWZ2|RUVA_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|86553750|gb|ABC98708.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab] Length = 204 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLY---EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 MI + G++ + + ++VQG+ Y + P R L L IG+ +F +R+ + Sbjct: 1 MIAFLSGHLVAIEWGERSSLTVEVQGIGYRVKAPARFLKQLPPIGEPVRVFTHLVVRETE 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + L+GF S +R F+ L V GVG + + +L+ ELV++++ +N ++++ PG+ Sbjct: 61 LVLYGFGSPAERDVFVELIKVSGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A R+ ELK K ++ P+ AL+ LGY + Sbjct: 121 HKTAQRLALELKTKLAHWRQGLEN-----ADRPLAGGPPPAIREEVEMALLALGYSLQEI 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ + + + +R A+ +S Sbjct: 176 QAALQALPSQPRP---TEEWLRDAITYLS 201 >gi|223986042|ref|ZP_03636071.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM 12042] gi|223961992|gb|EEF66475.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM 12042] Length = 193 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + D+++I+ QG+ Y ++ L +F H+R+D+ L Sbjct: 1 MIAMIKGTVFAVGLDWIIIENQGIGYKVFFSRPEAVRL---NQEVRVFTYQHVREDEFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ L SV+G+G + AM +L+ T ++V+ I + + ++PGI K Sbjct: 58 FGFLSMEEQDLFVKLISVKGLGPKTAMNMLAAATYQQMVQMIEQGDVAALKKMPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + +E+ +A+ AL LGY Q + + Sbjct: 118 ASQIILDLKGKLV--------------REETAEGKSSQAIEDALEALKALGYKQSELSG- 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V+++ + D + ++L L+ + Sbjct: 163 LSKVMREHPDKTTD-EYVKLGLQHL 186 >gi|259501311|ref|ZP_05744213.1| crossover junction endoribonuclease subunit A [Lactobacillus iners DSM 13335] gi|302190965|ref|ZP_07267219.1| Holliday junction DNA helicase RuvA [Lactobacillus iners AB-1] gi|309803578|ref|ZP_07697670.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 11V1-d] gi|309806006|ref|ZP_07700032.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 03V1-b] gi|309809677|ref|ZP_07703533.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 2503V10-D] gi|315653062|ref|ZP_07905990.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus iners ATCC 55195] gi|325911914|ref|ZP_08174317.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 143-D] gi|329919608|ref|ZP_08276597.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 1401G] gi|259167281|gb|EEW51776.1| crossover junction endoribonuclease subunit A [Lactobacillus iners DSM 13335] gi|308164326|gb|EFO66581.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 11V1-d] gi|308167609|gb|EFO69762.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 03V1-b] gi|308170037|gb|EFO72074.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 2503V10-D] gi|315489597|gb|EFU79231.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus iners ATCC 55195] gi|325476216|gb|EGC79379.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 143-D] gi|328937413|gb|EGG33835.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 1401G] Length = 194 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L+K N + D I+ AL+ + Sbjct: 168 IKPKLEKLPNQSAD-LYIKEALKLL 191 >gi|332365447|gb|EGJ43208.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK355] Length = 218 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGYLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGPSESKAPIQTVDNQEL-------EEAMEAMLALGYKAAE-LKK 193 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + + A I+ AL+ + Sbjct: 194 IKKVFEGTTDTA--ENYIKSALKML 216 >gi|319940111|ref|ZP_08014465.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus anginosus 1_2_62CV] gi|319810825|gb|EFW07152.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus anginosus 1_2_62CV] Length = 196 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG + + Y++++V + YI++ + G++ +FV +R+D L Sbjct: 1 MYEYFKGILSKITAKYIVVEVGQIGYILHV-ANPYAYSGQVNQEIQVFVHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ +Q + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVATGVAPKQVAVAATSDNKEL-------EEAMEAMLALGYKAAE-LKK 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A I+ AL+ + Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194 >gi|167766364|ref|ZP_02438417.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1] gi|167711955|gb|EDS22534.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1] Length = 190 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 6/193 (3%) Query: 13 YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72 V++D G+ Y + P+R S KIG ++ H+R+D + LFGFLS +++ F Sbjct: 2 SPGMVVVDNHGIGYQMMVPMRGESF-PKIGQEIKIYTHMHVREDDVSLFGFLSKEEKEAF 60 Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 LL V G+G +V + VLS ++ EL ++I ++ K I++ PG+ K A +++ ELK K Sbjct: 61 ELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKGAKKLILELKDKL 120 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 S + + + + + S I LV+LGY + +A AV V ++ Sbjct: 121 -SFEELEEDGVGAEIFDTSADSSDSVMIT--IEGLVSLGYSKSEAAIAVNKV--EDAKDL 175 Query: 193 DDSQIIRLALRAI 205 ++++ AL+ I Sbjct: 176 TPEELLKKALKNI 188 >gi|258653556|ref|YP_003202712.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM 44233] gi|258556781|gb|ACV79723.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM 44233] Length = 207 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++ D+ +I+V GV + L+ L + G+ L+ +R+D + L Sbjct: 1 MISSVRGEVLAIHLDHAVIEVGGVGLAVRTTPAALAEL-RRGESARLWTTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L+QSV GVG ++A+ +L+ + EL ++ ++ + + PGI K Sbjct: 60 FGFTTTAGKELFELVQSVSGVGPKIALALLAVLDPDELRRALSAGDTATLCRAPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ EL+ K + S + P ALV LG+ QA Sbjct: 120 AERLVLELRDKVGPVGSPAAGVAPVAGAASGSLAWRPQVTD----ALVGLGFTAKQAE 173 >gi|108762337|ref|YP_633128.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622] gi|123374257|sp|Q1D2J5|RUVA_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|108466217|gb|ABF91402.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622] Length = 202 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + IDV GV Y + L L G + V T +R+D L Sbjct: 1 MISRLRGTVLEKDLEDATIDVGGVGYRVNFSSLALGKLPAEGQPVDVRVRTVVREDAFDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + + F+LL SV VG R+++ VLS + ELV ++ +A+I G+ K Sbjct: 61 FGFLTKGEEEVFLLLNSVSRVGPRLSLMVLSGMEVPELVAALSRGEVARLAKIHGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ ++ + +SAL+NLGY Q QA A Sbjct: 121 AERLVLELKDKVKTIHLE-------AVSRGTAPAAVSGAHADLVSALLNLGYKQPQAEKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ A + R AL+A+ Sbjct: 174 ADLASERLGAEATFQALFREALKAL 198 >gi|325689191|gb|EGD31198.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK115] Length = 218 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVVADGPAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|86608038|ref|YP_476800.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-2-3B'a(2-13)] gi|123738043|sp|Q2JNW8|RUVA_SYNJB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|86556580|gb|ABD01537.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 204 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLY---EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 MI + G++ + + ++VQG+ Y + P R L L +G+ +F +R+ + Sbjct: 1 MIAFLSGHLVAIEWGERSSLTVEVQGIGYRVKAPGRFLKQLPAVGEPVRVFTHLVVRETE 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + L+GF S +R F+ L V GVG + + +L+ ELV++++ +N ++++ PG+ Sbjct: 61 LVLYGFGSPAERDLFVELIKVSGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A R+ ELK K +Q M ++ A MP AL+ LGY + Sbjct: 121 HKTAQRLALELKTKLAHW----RQGMGVADQPLAGGPPMP-IREEVEMALLALGYSTQEI 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ + +R A+ +S Sbjct: 176 QAALQALPTHPRP---TEDWLRDAITYLS 201 >gi|315221510|ref|ZP_07863430.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211] gi|315189344|gb|EFU23039.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211] Length = 196 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG + + Y++++V + YI++ + G++ +FV +R+D L Sbjct: 1 MYEYFKGILSKITAKYIVVEVGQIGYILHV-ANPYAYSGQVNQELQVFVHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ +Q + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVATGVAPKQVAVAATSDNQEL-------EEAMEAMLALGYKAAE---- 168 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|328465569|gb|EGF36798.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 1816] Length = 175 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 4/179 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKK 175 >gi|120602036|ref|YP_966436.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris DP4] gi|166230546|sp|A1VC43|RUVA_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120562265|gb|ABM28009.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio vulgaris DP4] Length = 202 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + ++ GV Y ++ P TL+ L G + F+ T +R+D + Sbjct: 1 MIAYVEGRLAEVAGNACVVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +RQ F++L S+ VGA+ + +LS+ +L ++ + + ++ GI K Sbjct: 61 LYGFATWDERQTFIVLTSISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K + +A++ L NLGYG+++A+ Sbjct: 121 TAQHIFLELKYKLKVEDLPAAAPLVTGGAPGG-------VFRDALAGLANLGYGEEEASH 173 Query: 180 AVVSVLKKEKNI 191 + VL E ++ Sbjct: 174 VLKEVLHGEPDL 185 >gi|148657871|ref|YP_001278076.1| Holliday junction DNA helicase RuvA [Roseiflexus sp. RS-1] gi|166200257|sp|A5UZS3|RUVA_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148569981|gb|ABQ92126.1| Holliday junction DNA helicase subunit RuvA [Roseiflexus sp. RS-1] Length = 197 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + D+V+++ G+ ++IY P ++ LG IG LF +R+D + L Sbjct: 1 MIASIRGILIAVAADHVVVETGGIGWMIYAPRPVIAALGDIGATVRLFTYLLVREDSLTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + RQ F L SV GVG + A+ +LS T EL +I + +A+ P I K+ Sbjct: 61 YGFETVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVTRLARTPRIGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + A ++ + AL++LG+ +A A Sbjct: 121 AERLVLELKGKI---------NVKGLPTGAAVTPAVAAANAELSEALISLGFTDAEAAAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + ++ D + +RLALR S Sbjct: 172 IAALPSDAPP--DLEERVRLALRYFSA 196 >gi|78184871|ref|YP_377306.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9902] gi|123770922|sp|Q3AVK0|RUVA_SYNS9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78169165|gb|ABB26262.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp. CC9902] Length = 214 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 12/214 (5%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + VL+ GV Y + R L + TL++ R+D Sbjct: 1 MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF S +R F LL V GVG + + +L ELV +I + K + Q GI Sbjct: 60 GSSLFGFPSRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGGDLKRLCQAQGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ +L+ + + Q E +P + + L++LGY + + Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLEPQPSLV---EGLASEQIPEAGEDVEATLISLGYDELE 176 Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206 A+ ++ + D +R L+ +S Sbjct: 177 IRRAIRAIADGASGVPPSGTDQDGWLRSCLQWLS 210 >gi|300868186|ref|ZP_07112818.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp. PCC 6506] gi|300333810|emb|CBN58002.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp. PCC 6506] Length = 207 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI +KG + + + ++++V + Y + R L +G+ +F +++D Sbjct: 1 MINYLKGTVADIQKGNNRVMLILEVNQIGYEVQILPRMTGQLPAMGEVVQVFTHQQVKED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q+ L+GF+S +R F L SV G+GA++A+ +L + +LV++I+ N++++A+ PG+ Sbjct: 61 QMVLYGFISGAERNLFRQLVSVSGIGAQLAIALLETLGLQDLVQAIVGGNTRILAKTPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ EL+ K + S L+ LGY + Sbjct: 121 GNKTAERLVLELRTKLSEWRNQEGLSTSV------PAGVSSVIQEEVEMTLLALGYTGAE 174 Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAIS 206 A+ L ++ ++ + IR A+ +S Sbjct: 175 VMQAL-QALSQDPSLLKKGNAEDWIREAIAWLS 206 >gi|86740076|ref|YP_480476.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3] gi|86566938|gb|ABD10747.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3] Length = 247 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 2/186 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV +++C TLS L ++G+ +L +R+ ++ L Sbjct: 1 MIASLAGTVTALTPLSAVIEVGGVGLLVHCSPSTLSRL-RVGESASLATTLIVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +LQS GVG ++A VL + ++ ++ V+ ++PGI K Sbjct: 60 YGFADADARDVFEILQSAAGVGPKLAQAVLGVHDPDTVRRAVAEEDLAVLTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +L+ + + + A ALV LGY +A Sbjct: 120 AQRIVLDLRDRLGPPGDGAPLPGPRLTSGPEPMPADAVGVAATVREALVGLGYSGREADA 179 Query: 180 AVVSVL 185 AV L Sbjct: 180 AVSRAL 185 >gi|315604284|ref|ZP_07879350.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313990|gb|EFU62041.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 180 str. F0310] Length = 201 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 93/205 (45%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+V + V G+ + ++ + + T+ +R+D + L Sbjct: 1 MISILRGTVASTGLDHVDVVVGGIGFRVHVTPACAQAMAR-DREITVHTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L +V G+G ++A+ L+ + +L ++ Q+ V+ +IPG+ K Sbjct: 60 YGFESSDERDVFAALMTVSGIGPKIALAALAVLRPDDLRRAVRDQDLAVLQRIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ E+ K S + ++ + + A ALV LG+ + QA A Sbjct: 120 AQRMALEIGDKLGS-----PAALPGAGPTRSAPPAEDAVAAEVRVALVGLGWSETQACAA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +D ++R AL + Sbjct: 175 IEKLAGSGLGASD---MLRAALVTL 196 >gi|189183542|ref|YP_001937327.1| Holliday junction DNA helicase RuvA [Orientia tsutsugamushi str. Ikeda] gi|229560111|sp|B3CRA9|RUVA_ORITI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189180313|dbj|BAG40093.1| holliday junction DNA helicase RuvA [Orientia tsutsugamushi str. Ikeda] Length = 205 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI K+KG ++ + + Y++ID+ GV Y +Y +TL L + G +LF+ETH+R+D+I Sbjct: 1 MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL + ++ F +LQSV G+G ++A+ +LS +T +L +I QN + I G+ K Sbjct: 61 LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + R+M EL+ K +++++ + + + + +AI+AL+ LG + +AT Sbjct: 121 LIDRLMIELRDKVANINTIANN--TSLATLSTDSNTHDNILSDAITALIALGISRAEATQ 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + +I ++++R AL+ Sbjct: 179 ILSDIYALSPSI-SVNELVRTALQR 202 >gi|329769669|ref|ZP_08261073.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325] gi|328838424|gb|EGF88033.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325] Length = 192 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +++D G+ Y I L + +F+ +R+D L Sbjct: 1 MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEYQLE---EEKQIFISQQVREDSNTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q++ + + PGI K Sbjct: 58 YGFSTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDAVYLTKFPGIGKKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK + + +A+ AL LGY + + T Sbjct: 118 AQQIILDLQGKV-----------DFAATASTPNNNANQYLKDALLALEALGYSKKELTKI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + D ++ L+ + Sbjct: 167 EKKLSAFDYDGVDS--YVKQGLKLL 189 >gi|116514518|ref|YP_813424.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274750|sp|Q048Y6|RUVA_LACDB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116093833|gb|ABJ58986.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126230|gb|ADY85560.1| Helicase Holliday junction [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 197 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++ + L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KEGDKARIYVEQVVRENGMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F L V G+G + A+ +++ L +I + + PGI K Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+GK + + + E + S+ +A+ AL LGY Q + Sbjct: 118 ASQIVLDLRGKMGNYVA------ENLFTEDEPVESVFPALEDALLALGALGYSQKEVDR- 170 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + LKK ++ D + I+ L Sbjct: 171 IKPKLKKLPEMSAD-EYIKQGL 191 >gi|46580661|ref|YP_011469.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. Hildenborough] gi|81566321|sp|Q729U3|RUVA_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46450080|gb|AAS96729.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. Hildenborough] gi|311234390|gb|ADP87244.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris RCH1] Length = 202 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + ++ GV Y ++ P TL+ L G + F+ T +R+D + Sbjct: 1 MIAYVEGRLAEVAGNACVVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +RQ F++L S+ VGA+ + +LS+ +L ++ + + ++ GI K Sbjct: 61 LYGFATWDERQTFIVLTSISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K + +A++ L NLGYG+++A+ Sbjct: 121 TAQHIFLELKYKLKVEDLPAAAPLVTGGAPGG-------VFRDALAGLANLGYGEEEASH 173 Query: 180 AVVSVLKKEKNI 191 + VL E ++ Sbjct: 174 VLKDVLHGEPDL 185 >gi|257066397|ref|YP_003152653.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM 20548] gi|256798277|gb|ACV28932.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM 20548] Length = 195 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G++ + ED +I+ + Y+I+ ++TLS + +I + ++ +R+D I L Sbjct: 1 MISYIIGHVRSIKEDSFIIENNNMGYLIFSSLKTLSNI-EINNEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F LL SV +G ++AMG+LS I+ E+ +II + + GI K Sbjct: 60 FGFFTKDELEMFTLLTSVSTIGPKIAMGILSSISVNEIKTAIINNDIDKLTVAKGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K + V +++ +K+ I A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMDFVPVENIELNSKDNEEIDV-------AREALLNLGYEKNDVEKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ +++ +L+ + Sbjct: 173 LFELKDTDLSL---EGLVKESLKRL 194 >gi|312875156|ref|ZP_07735169.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2053A-b] gi|311089263|gb|EFQ47694.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2053A-b] Length = 194 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L+K N + D I+ AL+ + Sbjct: 168 IKPKLEKIPNQSAD-LYIKEALKLL 191 >gi|15827159|ref|NP_301422.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae TN] gi|221229637|ref|YP_002503053.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae Br4923] gi|730695|sp|P40832|RUVA_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767378|sp|B8ZUI1|RUVA_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|466820|gb|AAA17095.1| ruvA [Mycobacterium leprae] gi|13092707|emb|CAC29990.1| Holliday junction DNA helicase component [Mycobacterium leprae] gi|219932744|emb|CAR70575.1| Holliday junction DNA helicase component [Mycobacterium leprae Br4923] Length = 203 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ G+ Y + L+ L + G L +R+D + L Sbjct: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATL-RQGSQARLVTAMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F+ L SV GVG R+AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K + + + + + ALV LG+ QA A Sbjct: 120 AERIVLELRDKVGPVGASGLTVGTAADGNAVRGS--------VVEALVGLGFAAKQAEEA 171 Query: 181 VVSVLKKE---KNIADDSQIIRLALRAI 205 VL E S +R AL + Sbjct: 172 TDQVLDGELGKDGAVATSSALRAALSLL 199 >gi|254518551|ref|ZP_05130607.1| holliday junction DNA helicase motor protein [Clostridium sp. 7_2_43FAA] gi|226912300|gb|EEH97501.1| holliday junction DNA helicase motor protein [Clostridium sp. 7_2_43FAA] Length = 201 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ DY++I+ G+ Y I+ T+S + KI + L++E +R+D + L Sbjct: 1 MYEYIRGKYKGINRDYIIIENNGIGYKIFTSGATMSSMPKIDEEVKLYLEQIVREDFLGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS L +I++ + K + + PGI K Sbjct: 61 YGFDAREELEMFKLLLSINGVGAKAALSLLSISRINNLRYAIMMGDEKHLCKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + S ++ + + Y + +A A Sbjct: 121 AGRIILELKDKIKKEDISEVIEGSGEFEDLMPNNASNIAEALGALLALG--YSEKEAEAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K + II+ L+ + Sbjct: 179 LKKVDKTD----TLENIIKNCLKVL 199 >gi|78212692|ref|YP_381471.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp. CC9605] gi|123756909|sp|Q3AKG6|RUVA_SYNSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78197151|gb|ABB34916.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9605] Length = 214 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 88/214 (41%), Gaps = 12/214 (5%) Query: 1 MIGKIKGNIEGL----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 M+G +KG I + ++ GV Y + R L + L++ + D Sbjct: 1 MVGWLKGLIVYKLQRGNRSQITLNCNGVGYEVQITQREWLTL-ENDQTIQLWIHQSISAD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + FGF S +R F L SV GVG + M ++ + ELVE+I + + + + GI Sbjct: 60 NWQFFGFKSTQERDIFRELISVNGVGPQAGMALMQECKSQELVEAISNGDLRRLCKAQGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ S+++ D + E MP + + L LGY + Sbjct: 120 GKRTAERLAVELR---ASIAAFAGMDPAPSLAEGVSSEQMPESGADVEATLSMLGYDDLE 176 Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206 A+ ++ + D +R L+ +S Sbjct: 177 VRRAIRAIAEGSDGPPPPGDDQDAWLRGCLQWLS 210 >gi|269216143|ref|ZP_06159997.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122] gi|269130402|gb|EEZ61480.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122] Length = 196 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + G + +DV GV + + LS L G+ + +R+D + L Sbjct: 1 MIAFLNGVVAGKNQSTAFVDVGGVGFAVGMSANDLSRLPPTGERVLIHTYFAVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS + F L V VG ++A+ LS A+E + +++ ++ ++++PGI K+ Sbjct: 61 YGFLSLESKSLFEKLIGVSSVGPKIALAALSTFKASEFIAAVLSGDAAAVSKVPGIGKKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKG D S + + A AL+ +G+ +A A Sbjct: 121 AQRIILELKGSL--------ADASVDDLFSTKAGEQAARLQGAKEALLAMGFTSAEADVA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + DS +++ ALR + Sbjct: 173 LKDAPET---LVTDSALLQYALRRL 194 >gi|320160780|ref|YP_004174004.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea thermophila UNI-1] gi|319994633|dbj|BAJ63404.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea thermophila UNI-1] Length = 191 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L E Y++I V V ++ P TL + G+ LF +R+D + L Sbjct: 1 MIAYVEGKVLELGETYLVIQVGAVGLQVFVP-STLRAKARAGETLVLFTYLVVREDLMAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R++F LL V G+G R+A+ +LS ++ + +I+ + +V++++PG+ K Sbjct: 60 YGFETPLEREFFGLLLGVNGIGPRLAISILSVLSVDAIRRAILSEQPEVLSRVPGVGRKN 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ L+GK + + M + AL +LGY +A TA Sbjct: 120 AQKIILSLQGKV-------------TAEGLEGVRPMAEVDQEVLEALTSLGYSVVEAQTA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V S+ K D + ++LALR S Sbjct: 167 VQSIPKDAP--MDLEERLKLALRYFST 191 >gi|227875448|ref|ZP_03993589.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris ATCC 35243] gi|269977300|ref|ZP_06184273.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1] gi|306818760|ref|ZP_07452482.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus mulieris ATCC 35239] gi|307701010|ref|ZP_07638035.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16] gi|227844002|gb|EEJ54170.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris ATCC 35243] gi|269934603|gb|EEZ91164.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1] gi|304648446|gb|EFM45749.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus mulieris ATCC 35239] gi|307614005|gb|EFN93249.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16] Length = 193 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D I G+ + TLS L + G ++ +R+D + L Sbjct: 1 MIALLKGQVVDKRIDRATILCGGLGLEFFATPNTLSTLNQ-GQDAEIYTCLVVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R+ F +L V+G+G ++A+ L+ ++ ++L ++ ++ + +IPG+ K Sbjct: 60 YGFDDFQQRETFQILIQVKGIGPKLALATLAVLSPSDLANAVANRDLTTLQRIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ E+ K + + V + + AL NLG+ Q QAT A Sbjct: 120 AERMSLEIGDKLGIVPTSVTTAATGGGFNATT----------VVEALTNLGWNQAQATEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V ++ D + +R AL+ + Sbjct: 170 VNAI-----EANDAATALREALQYLGS 191 >gi|325686747|gb|EGD28773.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK72] Length = 218 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVVADGPAESKAPVQIVDNQEL-------EEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|104774420|ref|YP_619400.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300811568|ref|ZP_07092052.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|123251847|sp|Q1G940|RUVA_LACDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|103423501|emb|CAI98403.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300497428|gb|EFK32466.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 197 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++ + L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F L V G+G + A+ +++ L +I + + PGI K Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+GK + + + E + S+ +A+ AL LGY Q + Sbjct: 118 ASQIVLDLRGKMGNYVA------ENLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + LKK ++ D + I+ L Sbjct: 171 IKPKLKKLPEMSAD-EYIKQGL 191 >gi|169824513|ref|YP_001692124.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] gi|302380570|ref|ZP_07269035.1| Holliday junction DNA helicase RuvA [Finegoldia magna ACS-171-V-Col3] gi|303233766|ref|ZP_07320420.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4] gi|229560032|sp|B0S1J4|RUVA_FINM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167831318|dbj|BAG08234.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] gi|302311513|gb|EFK93529.1| Holliday junction DNA helicase RuvA [Finegoldia magna ACS-171-V-Col3] gi|302495200|gb|EFL54952.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4] Length = 198 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I ++E+Y++++ + Y I+ + D ++ E R+D L Sbjct: 1 MYSYIIGVITEVHENYIVLENNNIGYKIFITDFFRDNVSAF-DEYKVYTEFVEREDASIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F LL V +G + AM +LS +T E +II + K++ Q PG+ K Sbjct: 60 YGFSSQKERELFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K ++D K + + A AL+ LGY ++ Sbjct: 120 ASRIILELKEKI-------EKDFVPSEKPVNKEVKRSNDSEFAREALLQLGYFKNDVDAF 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + + + + I++ A++++ Sbjct: 173 IEN---TDISGLSIEDIMKKAMKSLDS 196 >gi|29839888|ref|NP_828994.1| Holliday junction DNA helicase motor protein [Chlamydophila caviae GPIC] gi|33301629|sp|Q824M5|RUVA_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29834235|gb|AAP04872.1| Holliday junction DNA helicase RuvA [Chlamydophila caviae GPIC] Length = 207 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I+ P R L L G++ ++ T +R+ + Sbjct: 1 MYDYIRGILTYMSSGTLVIECQGLGFNIFAPDRWLIELSGQLHREVVVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F +L S GVG + + +L+ + ++L ++ + IA +PGI K Sbjct: 61 LYGFSSRRERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDVRAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + + ++ + PS I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLPDLLPLDSKAIASWESVK------PSCMDEGIQALAALGYSKPSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + A ++I+ +AL+ Sbjct: 175 MIAEAMSELPENASLAEILPIALKK 199 >gi|148244503|ref|YP_001219197.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius okutanii HA] gi|146326330|dbj|BAF61473.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius okutanii HA] Length = 202 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I +L++V + Y I C + + +G + +L+ ++++ L Sbjct: 3 MIGKLSGTILEKNPPEILLEVDKIGYEILCSMSSFYAMGDE-EQLSLYTHLSIKENAHIL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S ++ F L + G+G +VA+ +LS + L++ I N ++A+ PGI +K Sbjct: 62 YGFISKDEKTLFRELIRINGIGPKVALAILSHLDINSLIKVITDGNDTLLAKTPGIGIKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + L + + K A +AL LG+ ++ Sbjct: 122 AQKLIVELKDRLEKLKLNNENHKNIHIK-----FKKNPNIKQASAALQALGFKARESEKM 176 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + + + N +IR AL+ Sbjct: 177 LSVI---KDNSLSTKALIRQALQ 196 >gi|281413717|ref|ZP_06245459.1| Holliday junction DNA helicase RuvA [Micrococcus luteus NCTC 2665] Length = 216 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + D +I V G+ +TLS L + G + +++D + L Sbjct: 3 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHE-GRPGAVQTHLVVKEDALTL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R+ F +L + GVG R+A+ +LS + ++ ++ K + ++PGI K+ Sbjct: 62 SGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKM 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ V + + E A + + + A+ LG+ + +A A Sbjct: 122 ARKIIVELSGRLAPTGEPVPGAEAEASDEPAVETV---WHADVVQAMAGLGWSEKEALKA 178 Query: 181 VVSVLKKEKNIA---DDSQIIRLALR 203 V + + + D + ++R LR Sbjct: 179 VEATVAARPELDEGRDVAALLRATLR 204 >gi|327472197|gb|EGF17634.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK408] Length = 218 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSSLVNQETQIYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ S + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAAGSPAESKAPVQTADNQEL-------EEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|126642622|ref|YP_001085606.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC 17978] Length = 176 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 8/181 (4%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 Y I P+ T L K G TL+ +R+D +L+GF ++ F L V GVG + Sbjct: 2 GYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQLYGFSDAQEKTIFRTLLKVNGVGPK 60 Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMS 144 +A+G+LS ++ LV +I + + ++PG+ K A R+M EL+ + +L+ Q S Sbjct: 61 MALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKTAERLMIELRDRFKTLA----QGTS 116 Query: 145 CVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 S A +AL +LGY +A +V + + + + IIR AL++ Sbjct: 117 SAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQ---KAVAAVKADYTESADIIRAALKS 173 Query: 205 I 205 + Sbjct: 174 M 174 >gi|309800933|ref|ZP_07695065.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium JCVIHMP022] gi|308222469|gb|EFO78749.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium JCVIHMP022] Length = 185 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 11/185 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + LI+V GV Y I P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASMHA-GQEVKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A +I+ ELKG D+S + + I + L++LG+ Q A Sbjct: 120 AQKIILELKG---------SIDLSQIETAASVISRPEDTGSEQVVEGLISLGWRQQDALH 170 Query: 180 AVVSV 184 AV V Sbjct: 171 AVQEV 175 >gi|331002346|ref|ZP_08325864.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410162|gb|EGG89596.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107 str. F0167] Length = 196 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + D ++++ G+ Y ++ R + + K D ++ + D L Sbjct: 1 MIAYIKGIVTEKNTDSIIVECSGLGYEVFTCGRDIQSVSKT-DEILIYTYLRISDDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L + GVG + A+ ++S + + +L +I+ + K I+ GI KI Sbjct: 60 YGFLNKDDLLMFKKLLGISGVGPKAALSIMSTLGSFDLKMAIVSDDYKAISAAQGIGQKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K D+ + + + AL++LGY +A Sbjct: 120 AKRIILDLKEKV---------DLGSILVSDIDNTADSTVQTETAQALISLGYSSSEAYKV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S+ K+ + ++++AL+ ++ Sbjct: 171 LKSMDIKDSDK--VEDVLKIALKKMA 194 >gi|218961233|ref|YP_001741008.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas acidaminovorans] gi|167729890|emb|CAO80802.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas acidaminovorans] Length = 202 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + +I+ G+ + + PI T L G C L H+ QD IR+ Sbjct: 4 MIQYISGTLTFKTPVLAIIETMGIGWELKIPISTYEKLPTAGKPCKLLTYLHISQDDIRI 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R+ F++L V G+G ++A+ +LS ++ ++++ ++ ++PGI K Sbjct: 64 FGFATEAERELFVMLNKVGGIGPKIALSILSTLSIPTFIKAVNSGEEGLLTRVPGIGKKS 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK L + + Q + + SAL++LG+ Q Sbjct: 124 AQRLIVELKDDVHKLLNHIDQ----------KELQIGDVSSEVESALLSLGFNLHQIRKE 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +++ + + ++I+ ++ I Sbjct: 174 L-ALMDESMQKLNTEELIKEIIKRI 197 >gi|294811584|ref|ZP_06770227.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC 27064] gi|326440227|ref|ZP_08214961.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC 27064] gi|294324183|gb|EFG05826.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC 27064] Length = 204 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L ++ V GV ++C TL+ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + + + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + V + + S++ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGEPTGVPG-------ARRGAAAAPASWSDQLHAALIGLGYAGREADEA 172 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + Q +++ AL+ ++ Sbjct: 173 VAAVTPQAAAAGAAPQVGVLLKAALQTLN 201 >gi|306821186|ref|ZP_07454801.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550772|gb|EFM38748.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 201 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + ++V+++ + Y + T L ++ T++ +++D + L Sbjct: 1 MIDYISGTVVQKGLNHVVVECNNIGYKLLVSQNTSYEL-ELEKISTVYTHLIVKEDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF + +R F +L SV +GA++A+ +LS TAT++ I + + ++ G+ K Sbjct: 60 IGFSNMSERDMFRILISVSKIGAKIALSILSTYTATQIATFIKSADVVSLGKVSGLGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + I I AL LG+ +A ++ Sbjct: 120 AERLVLELKDKVDIFVGSEE----IAKIRKDDIPQEDEKMSQVIEALTMLGFSNKEAVSS 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +K+ AD +I+ +L + Sbjct: 176 AEKVYALDKD-ADVQSLIKSSLALL 199 >gi|317485564|ref|ZP_07944441.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6] gi|316923244|gb|EFV44453.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6] Length = 203 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 9/196 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + + ++ GV Y +Y P +T L + G ++ +R+D Sbjct: 1 MIAYIEGRLAEVCANACVVVTEGGVGYEVYLPQQTRLQLPERGGHVRFYICHIVREDAQE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F++L S+ VGAR A+G+LS +L ++ + + Q+ GI K Sbjct: 61 LFGFETWDERQTFIVLTSISKVGARTALGILSAFRPDDLRRLVLEDDVLALTQVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K +DM Q + S +A++ L LGY + +A Sbjct: 121 SAQHIFLELKYKLK------VEDMPAAASLQLGVPG--SVYRDALTGLEGLGYAEAEAAP 172 Query: 180 AVVSVLKKEKNIADDS 195 + ++L +E ++ Sbjct: 173 VLKNILHEEPDLEVSE 188 >gi|29833376|ref|NP_828010.1| Holliday junction DNA helicase RuvA [Streptomyces avermitilis MA-4680] gi|44888446|sp|Q820F4|RUVA_STRAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29610499|dbj|BAC74545.1| putative Holliday junction DNA helicase subunit B [Streptomyces avermitilis MA-4680] Length = 203 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V G+ + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RMGREAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVSTGDEKALVAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177 A +++ ELK + + + +AL+ LGY +A Sbjct: 120 AQKLLLELKDRL--------GEPLGTGGPAIGRAVTTGWREQLHAALIGLGYATREADEA 171 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + Q+++ AL+ ++ Sbjct: 172 VAAVAPQAEAAGGTPQVGQLLKAALQTLN 200 >gi|325685740|gb|EGD27818.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 197 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++ + L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F L V G+G + A+ +++ L +I + + PGI K Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+GK + + + E + S+ +A+ AL LGY Q + Sbjct: 118 ASQIVLDLRGKMGNYVA------ENLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LKK ++ D + I+ L + Sbjct: 171 IKPKLKKLPEMSAD-EYIKQGLGLL 194 >gi|225352127|ref|ZP_03743150.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157374|gb|EEG70713.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 205 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G ++ + +I+V GV Y P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLHGQVDFIDAASAIIEVGGVGYETRMPSADLASMHA-GQTVKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +A+ PG+ K Sbjct: 60 YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLAKAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A +I+ ELKG D+S + + S + L++LG+ Q A Sbjct: 120 AQKIILELKG---------SIDLSQIEGASKEVRSAEDAGSEQVVEGLMSLGWRQQDALH 170 Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205 AV +V + D ++++LAL ++ Sbjct: 171 AVQTVCESNHINVPLRDDDVPRVLKLALASL 201 >gi|20455269|sp|Q9L9C4|RUVA_RHIET RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|7110154|gb|AAF36813.1|AF175525_1 RuvA [Rhizobium etli] Length = 206 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DVQGVCY+ YC RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVE--SIILQNSKVIAQIPGISM 118 FGF++ L+R+WF LL A SR I LQ+ +++ PG+ Sbjct: 61 FGFMTALEREWFNLLSKASRASAPRWRSPCSRPLNARPSSPMPIALQDRAAVSRAPGVGP 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+A R++TELK +A + + + ++ K + + +A+SAL NLGY +DQA Sbjct: 121 KVAMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAA 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + +K AD +++IRL L+ ++ Sbjct: 178 NAVAAAMKTAGEGADSAKLIRLGLKELA 205 >gi|148284809|ref|YP_001248899.1| Holliday junction DNA helicase motor protein [Orientia tsutsugamushi str. Boryong] gi|166230578|sp|A5CEJ4|RUVA_ORITB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146740248|emb|CAM80579.1| Holliday junction DNA helicase [Orientia tsutsugamushi str. Boryong] Length = 205 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 120/205 (58%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI K+KG ++ + + Y++ID+ GV Y +Y +TL L + G +LF+ETH+R+D+I Sbjct: 1 MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL + ++ F +LQSV G+G ++A+ +LS +T +L +I QN + I G+ K Sbjct: 61 LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + R+M EL+ K +++++ + ++ + + +AI+AL+ LG + +AT Sbjct: 121 LIDRLMIELRDKVANINTIANNTSLAILSTDSN--THDNILSDAITALIALGISRAEATQ 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + +I ++++R AL+ Sbjct: 179 ILSDIYALFPSI-SVNELVRTALQR 202 >gi|125719033|ref|YP_001036166.1| Holliday junction DNA helicase RuvA [Streptococcus sanguinis SK36] gi|166231448|sp|A3CR11|RUVA_STRSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|125498950|gb|ABN45616.1| Holliday junction DNA helicase ruvA, putative [Streptococcus sanguinis SK36] Length = 196 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ S + + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVAAGSPAESKAPVQTADNQEL-------EEAMEAMLALGYKAAE---- 168 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|56751811|ref|YP_172512.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC 6301] gi|81301107|ref|YP_401315.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC 7942] gi|81561725|sp|Q5N128|RUVA_SYNP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123769196|sp|Q31KU1|RUVA_SYNE7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56686770|dbj|BAD79992.1| holliday junction DNA helicase RuvA [Synechococcus elongatus PCC 6301] gi|81169988|gb|ABB58328.1| Holliday junction DNA helicase subunit RuvA [Synechococcus elongatus PCC 7942] Length = 207 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G++ G+ + +L+DVQGV Y + P R+L L G +F +R+D Sbjct: 1 MIGYLQGSLAGVRKQSGRLLLLLDVQGVGYEVQTPARSLVELPAAGQSLQVFTHLQVRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q LFGFL +R F L SV G+G ++ + +L ++ ELV++I+ N++++++ PG+ Sbjct: 61 QWLLFGFLQMAERDLFRQLISVSGIGPQLGLALLDSLSLAELVQAIVAGNTRLLSRTPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R+ EL+ K S A + + L+ LGY + Sbjct: 121 GAKTAERLALELRSKLAEWREEAGLLPSATAAPIAAV------QEDVEMTLLALGYNNRE 174 Query: 177 ATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 A+ ++ ++ ++ IR A+ +S Sbjct: 175 ILQALTAIAQENLVQSGQPAEDWIREAIAWLS 206 >gi|282897835|ref|ZP_06305832.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9] gi|281197319|gb|EFA72218.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9] Length = 214 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + ++V G+ Y +Y P R + L GD +F +R+ Sbjct: 1 MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVTHIFTHYQIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+G +A+ ++ + ELV++II N+ ++ Q PG Sbjct: 61 ELPILYGFSSPAERDLFRHLLSVTGIGTAMAISLIDTLELPELVQAIISGNTIMLIQTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A R+ ELKGK + ++ P+ L LGY Sbjct: 121 VGKKTAERLCLELKGKLVEWRKSAGFFVATGGPP-------PAILEEVQMTLFALGYTPH 173 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207 + + A+ + + A I+ A+ +S Sbjct: 174 EVSHALHVISEDIGLPKNAYPEDWIKQAIAHLSS 207 >gi|254410540|ref|ZP_05024319.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC 7420] gi|196182746|gb|EDX77731.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC 7420] Length = 210 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 15/215 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHM 53 MI +KG + + + ++++V + Y + R LS +IG +F + Sbjct: 1 MISYLKGTVATIQKGNGNRVTLILEVNQIGYEVQIT-RQLSQEVQIGSEQVVQVFTHLQI 59 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+DQ L+GF S +R F L SV G+GA++A+ ++ + LV++I+ N++ +A+ Sbjct: 60 REDQQILYGFASAAERDLFRQLVSVSGIGAQLAIALIDTLGLQNLVQAIVTGNTRTLAKT 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ K A RI ELK K + V + P+ + L+ LGY Sbjct: 120 PGVGSKTAERIALELKTKLSEWRK-----FAGVETPASATGPSPAILEDVEMTLLALGYE 174 Query: 174 QDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 + T A+ ++ + + + IR A+ +S Sbjct: 175 TAEITQALNAISQDALLAKNPNAEEWIRRAIAWLS 209 >gi|256847966|ref|ZP_05553410.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis 101-4-CHN] gi|256715026|gb|EEU30003.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis 101-4-CHN] Length = 200 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + DY++I+V GV + + L + D ++V +R D I L Sbjct: 1 MYEYLLGTITEAHPDYLVIEVNGVGFRVQVANPYSYPLNE--DATKIYVYQAVRDDAISL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L +V G+G + A+ +L+ LVE+I N I + PGI K Sbjct: 59 FGFHNAEEKRLFTKLLAVSGIGPKSALAILANPDHEGLVEAIANNNVSYITKFPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQ-----QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 ASRI+ EL+ K SL + + N++ + + GY Sbjct: 119 ASRIIIELQDKVDSLLPTFDLQPQVEQLPTNNQDNPELADALAALKAL-------GYSAK 171 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 V S LK+E ++ D Q +R L +S Sbjct: 172 DVKK-VASSLKQEGGLSTD-QYLRKGLTLLS 200 >gi|332360160|gb|EGJ37974.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1056] Length = 196 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 98/206 (47%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG + + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIVSKITAKYIVLEVNSIGYILHV-ANPYAYSGRLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQEL-------EEAMEAMLALGYKATE---- 168 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|330718512|ref|ZP_08313112.1| Holliday junction DNA helicase RuvA [Leuconostoc fallax KCTC 3537] Length = 196 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 17/208 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQI 58 M I G I + Y++++ G+ Y + P R +I ++E +R+ +I Sbjct: 1 MYEYINGLITLVEPAYLVVENNGIGYRLNIANPYRFTEKTSRI-----FYIEQIVRETEI 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF +++ F L V G+G + A+ +L+ +A L ++ + + Q PG+ Sbjct: 56 SLYGFADASEKKLFNKLLDVSGIGPKSALAILASDSAIGLASAVENDDVSYLTQFPGVGK 115 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A +I+ +LKGK L S + +Q H +A+ AL+ LGY Sbjct: 116 KTAQQIILDLKGKLDDLVSAADAPEQSIVSKQDH-----RALDDALDALIALGYTSRD-- 168 Query: 179 TAVVSVLKKEKNIADDSQ-IIRLALRAI 205 V + KK + D + IR AL+ + Sbjct: 169 --VKMIGKKLDGVVDTTDGYIRQALKLL 194 >gi|269925207|ref|YP_003321830.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC BAA-798] gi|269788867|gb|ACZ41008.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC BAA-798] Length = 192 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+IE D +++ V GV ++ P + +G+IGD L +R+D + L Sbjct: 1 MIASIKGHIEYKLNDGLIVQVGGVGLRVFTPSSMVREIGEIGDEVYLHTHLMVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F LL SV GVG A+ +LS + E+ +I +N++ + IP I K+ Sbjct: 61 YGFSTREQLRLFELLISVTGVGPNHALNILSSASVEEIQTAIAQENAQFFSLIPRIGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELKGK VQ + +SAL+ LGY +A A Sbjct: 121 AARIILELKGKVEPSGEAVQ--------------IISHKDEELVSALLALGYTLGEAQAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V S L +K + + ++ RLAL S Sbjct: 167 VRS-LPTDKELPMEEKL-RLALSYFST 191 >gi|322386544|ref|ZP_08060171.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus cristatus ATCC 51100] gi|321269463|gb|EFX52396.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus cristatus ATCC 51100] Length = 204 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + + ++V +R+D L Sbjct: 9 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSSLVNQETQIYVHQVVREDAQLL 67 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 68 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 127 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 128 AQQMVLDLEGKVVAADGPAESKAPVQTVDNQEL-------EEAMEAMLALGYKAAE---- 176 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 177 LKKIKKFFEGTTDTAENYIKSALKML 202 >gi|116070445|ref|ZP_01467714.1| DNA recombination protein, RuvA [Synechococcus sp. BL107] gi|116065850|gb|EAU71607.1| DNA recombination protein, RuvA [Synechococcus sp. BL107] Length = 214 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 12/214 (5%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + VL+ GV Y + R L + TL++ R+D Sbjct: 1 MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F LL V GVG + + +L ELV +I + K + Q GI Sbjct: 60 GSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPHELVAAISGGDLKRLCQAQGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ +L+ + + Q E +P + + L++LGY + + Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLDPQPSLV---EGLASEQIPEAGEDVEATLISLGYDELE 176 Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206 A+ ++ + D +R L+ +S Sbjct: 177 IRRAIRAIADGASGVPPSGTDQDGWLRSCLQWLS 210 >gi|300172987|ref|YP_003772153.1| Holliday junction DNA Helicase RuvA [Leuconostoc gasicomitatum LMG 18811] gi|299887366|emb|CBL91334.1| holliday junction DNA helicase RuvA [Leuconostoc gasicomitatum LMG 18811] Length = 196 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 17/208 (8%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I +Y Y++I D GV Y ++ P R + ++VE +R+++ Sbjct: 1 MYEYINGLITNIYPAYLVICDRSGVGYKLFVANPYRF-----EQNVESHVYVEQIVRENE 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I ++GF+ + ++ F L +V G+G + A+ +L+ + LV ++ ++ + Q PG+ Sbjct: 56 ITMYGFIDENEKILFNKLLNVSGIGPKSALAILASDDSVGLVNAVANDDATYLTQFPGVG 115 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +I+ +LKGK L++ V S +A+ AL +LGY + Sbjct: 116 KKTAQQIVLDLKGKLDDLAASVGMTTPVSQPNSNQALS------DALEALNSLGYSTKEI 169 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + + D IR AL+ + Sbjct: 170 AK-LEKTLAAKHDTTDG--YIRSALKLL 194 >gi|118586981|ref|ZP_01544413.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163] gi|118432603|gb|EAV39337.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163] Length = 194 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I+ + YV IDV G+ + ++ P D T+F E +R ++I L Sbjct: 1 MYDFLTGIIKTITAGYVGIDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNEISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G + A+ +++ L+ ++ K + + PGI K Sbjct: 58 YGFKTVEERNLFQKLLNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK S + ++ + +A++ALV LG+ + Sbjct: 118 AQQIVLDLKGKLGDFSKNI--------APMKNLLENSAELDDALAALVALGFSSKEVNK- 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L + D+ I+ L+ + Sbjct: 169 INPKLASLGELTTDA-YIQKGLKLL 192 >gi|313897511|ref|ZP_07831054.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2] gi|312957881|gb|EFR39506.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2] Length = 212 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I D ++I+ G+ Y +Y L L+ H+R+D I L Sbjct: 20 MIAFIKGIIHSYSNDSLIIENNGIGYRVYVANPMAVRLNA---EVILYTYQHVREDAITL 76 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F+ L SV+GVG + A+G+L A ++ +I + K + +PGI K Sbjct: 77 FGFTTMEEHDLFLQLISVKGVGPKTALGMLGVCPARNMIAAIESNDVKTLKGLPGIGAKT 136 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + ++ ++A+ AL LGY + Sbjct: 137 ASQIVLDLKGKLVEEVTELE-------------VKENEQLLDALEALKALGYKNAE---- 179 Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206 + S+ K+ Q IR L ++ Sbjct: 180 LNSIKKELGTLEAMTSDQYIRKGLGILA 207 >gi|313124267|ref|YP_004034526.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280830|gb|ADQ61549.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 197 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++ + L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F L V G+G + A+ +++ L +I + + PGI K Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +L+GK + + + E + S+ +A+ AL LGY Q + Sbjct: 118 AAQIVLDLRGKMGNYVA------ENLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LKK ++ D + I+ L + Sbjct: 171 IKPKLKKLPEMSAD-EYIKQGLGLL 194 >gi|15806292|ref|NP_294998.1| Holliday junction DNA helicase RuvA [Deinococcus radiodurans R1] gi|20455276|sp|Q9RUV7|RUVA_DEIRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|6459015|gb|AAF10840.1|AE001974_5 Holliday junction binding protein [Deinococcus radiodurans R1] Length = 201 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + E ++ GV Y + CP L+ L K G+ +R+D L Sbjct: 1 MIAYLSGVVREVREGSAVVVAGGVGYEVQCPAGMLARL-KPGEAAEFSTRFIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F LL SV GVG ++ + +LS + + L +I + K+++ + G+ K Sbjct: 60 FGFPDADHLKLFDLLTSVSGVGPKLGLALLSAMPVSALAAGLIGGDVKLLSSVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL K + S + + +A+ AL+ LG+ + Q A Sbjct: 120 AERLALELSSKVPE---HLAAAASGAAGGKRPARVSSTAGHDAVDALLALGFREAQVRAA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L + A +IR AL + Sbjct: 177 VAELLGADPE-ASADTLIRKALGRL 200 >gi|227484942|ref|ZP_03915258.1| possible crossover junction endoribonuclease subunit A [Anaerococcus lactolyticus ATCC 51172] gi|227237097|gb|EEI87112.1| possible crossover junction endoribonuclease subunit A [Anaerococcus lactolyticus ATCC 51172] Length = 196 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+++ + E+ +I+ + Y I + +LS + +I + ++ +R+D I L Sbjct: 1 MISYIKGDVKAINEEGFIIETNNIGYYINSTLTSLSNI-QINNEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + + F+LL SV +G ++A+G+LS I+A E+ +I+ + + GI K Sbjct: 60 YGFYSKDELEMFLLLISVSSIGPKIAIGMLSSISADEIKLAIVNNDIDKLTDAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ + VN + + + A AL NLGY ++ Sbjct: 120 ASRIILELVDKVKKMAIPDLDKVEKVNPVKNNDIEV------AREALKNLGYMENDVARV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ +I+ +L+ + Sbjct: 174 LNELKDTDLSL---EGLIKESLKRL 195 >gi|332712357|ref|ZP_08432284.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L] gi|332348831|gb|EGJ28444.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L] Length = 211 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 14/215 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHM 53 MI +KG + + + +++DV + Y I R L +F + Sbjct: 1 MISYLKGTVASIQKSTGNRVTLILDVNYIGYEIQITRRLSQELPVALSEKTVQIFTHLQI 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R++Q L+GF S +R F L SV G+GA++A+ +L + LV++I+ N + +++ Sbjct: 61 REEQQVLYGFASAAERDLFRQLVSVNGIGAQLAIALLDTLGLPNLVQAIVTGNIRALSKT 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ K A RI ELK K V S V + P + L+ LGY Sbjct: 121 PGVGSKTAERIALELKTKLAQWHKV-----SEVESPLSANGLSPGIQEDVEMTLLALGYE 175 Query: 174 QDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 D+ A+ ++ + + IR A+ +S Sbjct: 176 NDEIAQALHAISEDTQVAKSKNAEDWIREAIAWLS 210 >gi|157150589|ref|YP_001451298.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str. Challis substr. CH1] gi|189045776|sp|A8AZT8|RUVA_STRGC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157075383|gb|ABV10066.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str. Challis substr. CH1] Length = 196 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 97/206 (47%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVAADGLAESKAPVQTVDNQEL-------EEAMEAMLALGYKATE---- 168 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|332799127|ref|YP_004460626.1| Holliday junction ATP-dependent DNA helicase ruvA [Tepidanaerobacter sp. Re1] gi|332696862|gb|AEE91319.1| Holliday junction ATP-dependent DNA helicase ruvA [Tepidanaerobacter sp. Re1] Length = 193 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M+ ++G + + D+ +ID+ G + + T + + ++G+ L+ + +R D + Sbjct: 1 MLDYLEGVLVHVEPDFAIIDIGGWGLKLNISMFTYNKIKTELGNKLKLYTQMVLRDDAVE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF ++RQ ++LL V G+G + A+ +LS + L SI+ ++ K + ++PGI K Sbjct: 61 LFGFFDVVERQAYVLLNKVSGIGPKAAISILSLMDVARLKTSILSEDVKDLVKVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ ELK + L + M + I A AL++LG+ + Sbjct: 121 TAQKIIIELKDRIKDLPVTSDEGM-------------YNSIIEAREALISLGFNPMEIQL 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + KN II+ AL+ +S Sbjct: 168 VLDE--DSVKNNDSVEDIIKCALKKLS 192 >gi|218441378|ref|YP_002379707.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424] gi|226725437|sp|B7K970|RUVA_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218174106|gb|ACK72839.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424] Length = 209 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGL-----YEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMR 54 MI +KG + + ++++V + Y I P R L + +F +R Sbjct: 1 MINYLKGKTTQILKTPSNRNILILEVNHIGYEIQIPSRLARNLSLEEDQIVQIFTHLQIR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF +D +R F L ++ GVG + A+ ++ + L+ +I+ + K +++ P Sbjct: 61 EDQQILYGFSTDSERDLFRQLININGVGTQTAIALIDTLGIEALINAIVTNDVKTLSKTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A RI ELK K + + + L+ LGY Sbjct: 121 GVGPKTAERIALELKSKLSQWEQAI-----ALKTPVSVGVPSREILEEVEMTLLALGYTD 175 Query: 175 DQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206 ++ A+ ++ + + + + ++ A+ +S Sbjct: 176 EEIDQAISAISQDNLLLKNPHVEEWLKSAIAWLS 209 >gi|258645438|ref|ZP_05732907.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470] gi|260402789|gb|EEW96336.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470] Length = 201 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG + +++ I+ G+ Y ++ + + +G L +R+D I L Sbjct: 1 MIGYIKGKATVVSKEFCFIEAGGIGYRVFISEMSRQKI-HLGAPVRLLTYMAVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F++L SV +G +VAMG+LS + + V SI +N V+ ++PG+ K Sbjct: 60 YGFLTQEEYDLFLILISVSKIGPKVAMGILSVMEPADFVLSIRNRNLSVLTKLPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D+ A A +A L LGY + Sbjct: 120 AERLLVELKDKVGDFA---EGDIDEPESLAAGKPDESGIAADAAKYLRALGYEDTEIQPV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + K D S ++ ALR Sbjct: 177 LKKLSIEYK---DVSPLVSAALRE 197 >gi|303249145|ref|ZP_07335385.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans JJ] gi|302489470|gb|EFL49417.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans JJ] Length = 202 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + + Y ++ GV Y + P + L G +LFV T +R+D Sbjct: 1 MIGYIEGRVVVRRDRYAIVLTPGGVGYELELPGPVAASLPAPGGQASLFVHTVVREDAFE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + DR+ F +L + +G + A+ +LSR TA +L + + + Q+ GI K Sbjct: 61 LFGFATIEDRETFRILIGITKLGPKTALAILSRYTADDLARIVATADLDALTQVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL K + + + ++ L NLGY + A Sbjct: 121 SAQRILIELTYKL--------EGQAATAAAVTAPIPGGGVLADVVAGLTNLGYPEADARR 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 +VL E ++ D + +R AL+ ++ Sbjct: 173 VGTAVLDDEPDL-DVAGALRQALKRLAS 199 >gi|218888287|ref|YP_002437608.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226725439|sp|B8DNJ8|RUVA_DESVM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218759241|gb|ACL10140.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 202 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + ++ GV Y ++ P TLS L + G V T +R+D + Sbjct: 1 MIAYVEGRVAEISGNACVVVTEGGVGYEVHLPAHTLSRLPERGGQVAFHVRTEVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ FM+L ++ VGAR A+ +LS+ +L ++ + + ++ GI K Sbjct: 61 LFGFSTWDERQTFMVLTTISKVGARTALAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K A + +A++ L NLGY +D+A Sbjct: 121 TAQHIFLELKYKLKVEDL-------PAGLVLAGGAAPGGVFRDALAGLGNLGYLEDEAAP 173 Query: 180 AVVSVLKKEKNI 191 + VLK E ++ Sbjct: 174 VLKEVLKAEPDL 185 >gi|327467941|gb|EGF13431.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK330] Length = 196 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 97/206 (47%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGRLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVAADGPAESKAPIQTADNQEL-------EEAMEAMLALGYKAAE---- 168 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|313206325|ref|YP_004045502.1| holliday junction DNA helicase subunit ruva [Riemerella anatipestifer DSM 15868] gi|312445641|gb|ADQ81996.1| Holliday junction DNA helicase subunit RuvA [Riemerella anatipestifer DSM 15868] gi|315023191|gb|EFT36202.1| Holliday junction DNA helicase RuvA [Riemerella anatipestifer RA-YM] gi|325336230|gb|ADZ12504.1| Holliday junction resolvasome, DNA-binding subunit [Riemerella anatipestifer RA-GD] Length = 194 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ L +++I+ GV Y + + T IG ++ + +R+D L Sbjct: 1 MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNTSKHF-SIGKESLIYTQQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL SV GVG AM +LS + E+ ++I+ NS V+ ++ GI K Sbjct: 60 YGFSELKEKEMFNLLISVNGVGPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + + ++ + ++SAL LG + + Sbjct: 120 AQRIIIDLKDKVLHFGADESDISTVIDNK---------VKEESLSALEVLGIPKKMSEKL 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +LK+ I +++ L+ I Sbjct: 171 ANKILKQNPEIQ-TEDLVKQILKNI 194 >gi|297588495|ref|ZP_06947138.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia magna ATCC 53516] gi|297573868|gb|EFH92589.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia magna ATCC 53516] Length = 198 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I ++E+Y++++ + Y ++ + D ++ E R+D L Sbjct: 1 MYSYIIGVITEVHENYIVLENNKIGYKVFITDFFRDNVSAF-DEYKVYTEFVEREDASIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F LL V +G + AM +LS +T E +II + K++ Q PG+ K Sbjct: 60 YGFSSQKERDLFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K ++D K S + A AL+ LGY ++ Sbjct: 120 ASRIILELKEKI-------EKDFVPSEKPVTKEVKKSSDSEFAREALLQLGYFKNDVDAF 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + + + + I++ A++++ Sbjct: 173 IEN---TDISGLSIEDIMKKAMKSLDS 196 >gi|325290232|ref|YP_004266413.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus glycolicus DSM 8271] gi|324965633|gb|ADY56412.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus glycolicus DSM 8271] Length = 200 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +D +++DV GV Y++ P LS + +IG L +R+D + L Sbjct: 1 MIALLRGTVWEMDKDKLIVDVNGVGYLLNVPSGKLSSV-RIGQEVVLHTYLLVREDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D++ F+ L SV G+G + A+ +LS ++ +++ +++ +N + +I GI KI Sbjct: 60 FGFADRQDKELFIKLLSVSGIGPKAALSILSSFSSVQIITALVQENHVMFTEISGIGSKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + A S P + AL+ LG+ + TA Sbjct: 120 ARRLTLELKEKFKDYHLE-----GLTGETFAGSESGPGSEPGIMEALLALGFTPGETRTA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V K E + +R ALR ++ Sbjct: 175 VNAVGKLEG--LTFEEQLREALRLLA 198 >gi|296270037|ref|YP_003652669.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM 43833] gi|296092824|gb|ADG88776.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM 43833] Length = 206 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 14/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + + +I+V G +++C TL+ L ++G+ L +R+D + L Sbjct: 1 MIASVAGKVAAIGPETAVIEVGGFGVLVHCTPATLAGL-RVGEPARLATALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R F L +V GVG R+A+ +L+ + L ++ + K + +PGI K Sbjct: 60 YGFASDDERAIFESLLTVNGVGPRLALAMLAVHSPNALRTAVASGDVKALTMVPGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM EL+ + + + + LV LGY A A Sbjct: 120 AQRIMLELRDRL-------GPARATAAGMPDGRGGPSPWREQVHAGLVGLGYSARDADEA 172 Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAIS 206 + ++ + + + + +++ ALR +S Sbjct: 173 IAAIAHEAEAAEAAGREPEIAALLKSALRVLS 204 >gi|300774281|ref|ZP_07084145.1| crossover junction ATP-dependent DNA helicase RuvA [Chryseobacterium gleum ATCC 35910] gi|300506925|gb|EFK38059.1| crossover junction ATP-dependent DNA helicase RuvA [Chryseobacterium gleum ATCC 35910] Length = 194 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ L Y +I+VQGV Y + + T L + LF++ +R+D L Sbjct: 1 MIFSLQGIVQELTPTYAVINVQGVGYYVGISLMTSQTLV-LNQQTFLFIQQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F LL SV GVGA A+ +LS ++ E+ +I+ NS +I + GI K Sbjct: 60 FGFNTRSEKEMFNLLISVNGVGAVSALILLSTLSLDEIASAILSGNSALIQKAKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K S + ++SAL LG + + Sbjct: 120 AERIIVDLKDKVQKYSD---------PNANISVMVDNKIKEESLSALEVLGIPKRTSEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++K+ +I ++++ L+ I Sbjct: 171 ADKIIKQNPSI-SVEELVKQILKNI 194 >gi|269837708|ref|YP_003319936.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM 20745] gi|269786971|gb|ACZ39114.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM 20745] Length = 193 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I Y VLID+ G+ + T+ LG++GD L+ +R+D I L Sbjct: 1 MISGVRGPIHAKYPGIVLIDLHGLIIRVLTSQTTVDDLGEVGDHAELYTHLRVREDDITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + Q F LL SV GVG RVA+ +LS E+ I ++ ++++PGI K Sbjct: 61 YGFSTPEELQLFELLTSVTGVGPRVALNILSSARPEEVHRVIESEDIAALSRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL+GK + + ++ + E + LGY +A A Sbjct: 121 ASRIILELRGKLPAPAGAQAPALAAADAEAMEAL-------------MALGYTAPEARDA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + E + + AL+ ++ Sbjct: 168 LARIERHEGQ--TVEERVYAALQTLA 191 >gi|227499581|ref|ZP_03929688.1| crossover junction endoribonuclease subunit A [Anaerococcus tetradius ATCC 35098] gi|227218340|gb|EEI83594.1| crossover junction endoribonuclease subunit A [Anaerococcus tetradius ATCC 35098] Length = 195 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G++ + E+ +I+ + Y+IY + TLS L +I ++ +R+D I L Sbjct: 1 MISYIIGHVRNIDEESFIIENNNIGYLIYSSLATLSNL-EINSEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F LL SV +G + AMG+LS I+ E+ +++ + + GI K Sbjct: 60 FGFFTKDELEMFSLLTSVSTIGPKTAMGILSSISVNEIKTAVVNNDIDKLTLAKGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K +S V +++ + + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMSFVPVENIKQDD-------MLNEDFEVAKEALLNLGYQKNDVDRV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ +++ +L+ + Sbjct: 173 LSELKDTDLSL---EGLVKESLKRL 194 >gi|326803735|ref|YP_004321553.1| Holliday junction DNA helicase RuvA [Aerococcus urinae ACS-120-V-Col10a] gi|326651259|gb|AEA01442.1| Holliday junction DNA helicase RuvA [Aerococcus urinae ACS-120-V-Col10a] Length = 203 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L + V+++ G+ Y IY P + G +++ + QD IRL Sbjct: 2 MYQYIKGLLVDLTSEAVVVETAGLAYYIYFP-NPYRLSDQKGQQVQVWLYQAVSQDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L SV G+G + A+ +L+ + +I +N K + + PG+ K Sbjct: 61 YGFFDQAEKQLFLQLISVSGIGPKSALSILAYGDQAGFIAAIESENVKFLTKFPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+ K L S + + + + I +AL +LGY + + Sbjct: 121 AQQIILDLQSKLSRLKS---EALPADQEVISDQSESSQMMIELEAALNSLGYAKREIDQV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + IR+ALR I Sbjct: 178 IKK--GDFSEVDNTADAIRVALRYI 200 >gi|226226039|ref|YP_002760145.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27] gi|259495644|sp|C1A615|RUVA_GEMAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226089230|dbj|BAH37675.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27] Length = 197 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI +++G I D V ++ GV Y P+ L G TL +R+D Sbjct: 1 MISQVRGTIMHRELDRVEIMTASGVAYECLIPLSVFESLPSEGQTVTLHTHLVVREDAWH 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F L +GVG +A+G+LS +T +V ++ ++ + ++P + K Sbjct: 61 LYGFAHAYERAVFQKLLHAKGVGPALALGILSALTPDRVVRALHEKDVLTLMRVPRVGRK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +L K V A + +A+ AL+ LGY Q +A Sbjct: 121 KAEQIILDLADKI-----------DAVGPAPATGTAPSPLGDDAVRALIALGYNQTEADR 169 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AV +V++ D S ++R AL ++ Sbjct: 170 AVRAVVESGAP-KDVSSLVRGALSRLTA 196 >gi|325479262|gb|EGC82358.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii ACS-065-V-Col13] Length = 195 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I + ED +I+ + YII+ + TL+ + +I + ++ +R+D I L Sbjct: 1 MISYIIGQIRAINEDNFVIENNSMGYIIFSSLTTLTNI-EINNEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S + + F+ L SV +G + A+G+LS ++ E+ +I+ + + GI K Sbjct: 60 FGFISKDELEMFLHLTSVSTIGPKTALGILSSLSVNEIKNAILNNDINKLTVAKGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ V + + + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMNFVPIEKTE-------DVSVVNEDFDVAKEALLNLGYQKNDIDRV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ + E ++ ++++ +L+ + Sbjct: 173 LLELKDNELSL---EELVKESLKRL 194 >gi|325697267|gb|EGD39153.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK160] Length = 196 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 97/206 (47%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDTELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVAADGPSESKAPVQTADNQEL-------EEAMEAMLALGYKVAE---- 168 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|308235709|ref|ZP_07666446.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis ATCC 14018] gi|311114741|ref|YP_003985962.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella vaginalis ATCC 14019] gi|310946235|gb|ADP38939.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella vaginalis ATCC 14019] Length = 212 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 9/211 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G IE + LI V GV Y +Y P L+ L + G ++ + QD + L Sbjct: 1 MIGMLNGVIESVDSRCALICVSGVGYEVYMPSSDLAALHE-GQDVKVYTSLQVSQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S ++ F+ +Q V GVG +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTSMPAKRIFLQIQQKVSGVGPKVALSLLSTLNVNRLLQAIADGDITALSSAPGLGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ ELKG +I +S + + D S +K + + L++LG+ Q A Sbjct: 120 GAQKIVLELKG-SIDVSQLNEDDTSKDSKSYKKEFDESGISK-VVDGLMSLGWKQSDAQR 177 Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205 AV +V EK + +D ++R+AL A+ Sbjct: 178 AVENVCNSEKIALPISDSDMPNVLRMALAAL 208 >gi|154508894|ref|ZP_02044536.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC 17982] gi|153798528|gb|EDN80948.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC 17982] Length = 207 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 9/204 (4%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + + D++ I V G+ + ++ + T+F +R+D + L+ Sbjct: 8 ISILRGTVASVGLDHIDIVVGGIGFRVHVTPA-FAQGASRDQEMTVFTSMIVREDSMTLY 66 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF S +R F + SV G+G ++A+ L+ + +L ++ Q+ + +IPG+ K A Sbjct: 67 GFESADERDVFTKMLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSTLQRIPGVGKKSA 126 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R+ E+ K + + A + + A +ALV LG+ + QA A+ Sbjct: 127 QRMALEIGDKLGT-----PAALPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + +D ++R AL + Sbjct: 182 EKLAGSGLGASD---MLRAALVTL 202 >gi|298242494|ref|ZP_06966301.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM 44963] gi|297555548|gb|EFH89412.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM 44963] Length = 196 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G ++ + D+V + V G ++ P T+S LG+ G L HMR+D I L Sbjct: 1 MITSIHGILQTCHPDHVTVRVGGFGIQVFAPATTISGLGETGTEVELHTHFHMREDGIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++DR F L +V GVG RVA+ +LS + A L ++I ++ + + G+ ++ Sbjct: 61 YGFATEMDRDAFEQLIAVNGVGPRVALSLLSVMDAPALYKAIADEDQQRLGLAKGVGKRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ LKGK S+ V + AL+ LG+ +A A Sbjct: 121 AAQLILALKGKLPSI----------VPAGTISGVPSGKLQTEVLEALMGLGFSSAEAQAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +++ Q + ALR S Sbjct: 171 IAKIPQEQ--AMTLEQQVTYALRTFS 194 >gi|227510189|ref|ZP_03940238.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513117|ref|ZP_03943166.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC 11577] gi|227083692|gb|EEI19004.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC 11577] gi|227190394|gb|EEI70461.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 198 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + Y+++ V G+ Y+IY + + ++V + I L Sbjct: 1 MYEFMDGQIVDITPAYIVLLVNGIGYLIYTADPYRFNVDQ-NKTIRVYVYQSVSDSAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F L +V G+G + A+ +L+ + LV +I ++ K + + PG+ K Sbjct: 60 YGFYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVSAISNKDVKFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK LS +VQ EQ +AISAL LGY Q A Sbjct: 120 AQQIILDLQGKVGDLSQIVQARSGQSASEQ------SDELRDAISALEALGYSAKQID-A 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L K+K + D + + L L+ + Sbjct: 173 IRLELGKDKALTTD-EYLSLGLKLL 196 >gi|259502857|ref|ZP_05745759.1| crossover junction endoribonuclease subunit A [Lactobacillus antri DSM 16041] gi|259169224|gb|EEW53719.1| crossover junction endoribonuclease subunit A [Lactobacillus antri DSM 16041] Length = 197 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + Y+++DV GV Y + +FV +R D I L Sbjct: 1 MYEYLTGTISIVAPQYIVVDVHGVGYKLLV-ANPYRFHEDPATAVRVFVYQAVRDDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++Q FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFSDQAEKQLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNISYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LK K + +S D + + A+ A+ GY + Sbjct: 120 ASQIVLDLKDKLAAATSGSLFDQQTASDPANPALADALAALKAL------GYKDRE---- 169 Query: 181 VVSVLKKEKN-IADDSQIIRLALRAIS 206 V + K+ + +R ALR ++ Sbjct: 170 VKKIGKQLGTQQQSTDEYLRQALRLLN 196 >gi|115380771|ref|ZP_01467652.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca DW4/3-1] gi|310823011|ref|YP_003955369.1| holliday junction ATP-dependent DNA helicase ruva [Stigmatella aurantiaca DW4/3-1] gi|115362222|gb|EAU61576.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca DW4/3-1] gi|309396083|gb|ADO73542.1| Holliday junction ATP-dependent DNA helicase RuvA [Stigmatella aurantiaca DW4/3-1] Length = 203 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +IDV GV Y + TL L G + V T +R+D L Sbjct: 1 MIAALRGTVAEKDLEEAIIDVAGVGYRVAFSTLTLGKLPAEGQPVHVRVRTVVREDAFEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS + + F+LL SV VG R+A+ VLS + EL ++ + +I G+ K Sbjct: 61 FGFLSKAEEEMFLLLTSVSHVGPRLALMVLSGMEVAELAVALGKGEIARLTKIHGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L + V K + + + +SAL+NLGY QA A Sbjct: 121 AERLVLELREKVKELH------LEAVAKGASSVSVPAGPKADLVSALLNLGYKAPQAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ A + R AL+ + Sbjct: 175 AELAGERLGPEAAFQALFREALKVL 199 >gi|313892063|ref|ZP_07825661.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII 345-E] gi|329120927|ref|ZP_08249559.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister micraerophilus DSM 19965] gi|313119515|gb|EFR42709.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII 345-E] gi|327471386|gb|EGF16837.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister micraerophilus DSM 19965] Length = 200 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG + + ++ G+ Y I+ L ++G+ L+ +R+D I+L Sbjct: 1 MIGYIKGTVTTFEKQACFVETSGIGYRIFISDIDKEKL-RVGENIKLYTYMAVREDAIQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ F++L SV +G +VAMG+LS I +I ++ V+ ++PGI K Sbjct: 60 YGFIEKESYDLFLILISVSKIGPKVAMGILSSIDINSFCNAIQKKSISVLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ V + S A+ L +LGY + + Sbjct: 120 AERLVLELKDKI------AVSNVENVESDTESSTSGTVPENEAVMILKSLGYQEYEIMPV 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + S+ K+ K+ +++R L Sbjct: 174 LKSIKKEFKDPM---ELVRAVL 192 >gi|296111820|ref|YP_003622202.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU 11154] gi|295833352|gb|ADG41233.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU 11154] Length = 196 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 100/208 (48%), Gaps = 17/208 (8%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I +Y Y++I D GV Y ++ P R + ++VE +R++ Sbjct: 1 MYEYINGLITNIYPAYLVICDRSGVGYKLFAANPYRF-----EQNVESHVYVEQIVREND 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I ++GF+ + ++ F L +V G+G + A+ +L+ AT LV ++ ++ + Q PG+ Sbjct: 56 IAMYGFIDENEKILFNKLLNVSGIGPKSALAILASDDATGLVNAVANDDASYLTQFPGVG 115 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +I+ +LKGK L+ +S + + +A+ AL +LGY + Sbjct: 116 KKTAQQIVLDLKGKLDDLA------ISAGVQGPTREQNTNQALSDALEALESLGYSAKEV 169 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L +++ D IR AL+ + Sbjct: 170 AK-LEKTLASQQDTTDG--YIRSALKLL 194 >gi|302335491|ref|YP_003800698.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM 7084] gi|301319331|gb|ADK67818.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM 7084] Length = 209 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + + +V++DV G+ Y + T + L +G+ TL +++ + Sbjct: 1 MIVQLTGTLVEVLPTHVIVDVGGIGYELGVSATTAASLPAVGEAGVTLLARMLVKESAVE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L V GVG ++A+ VLS + L ++ Q++ +A +PG+ K Sbjct: 61 LYGFASREERAVFDRLVGVSGVGPKLALAVLSTFSPASLATVVVTQDATRMATVPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ EL+ + + MS + S +A SAL+ +G+ +A Sbjct: 121 KAQRLLMELQDVFTRDTELRGLVGMSEPAPRSPLANTAESVQSDATSALLAMGFTPQEAE 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ ++ + I ALR + Sbjct: 181 LALRG--HEDAGALTVEKAISYALRHL 205 >gi|171742914|ref|ZP_02918721.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC 27678] gi|171278528|gb|EDT46189.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC 27678] Length = 202 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 16/207 (7%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 + G +E + LI+V GV Y P L+ + G ++ ++ QD I LFGFL Sbjct: 2 LHGRVESVDMSSALIEVGGVGYETRMPSADLASMHA-GQEVKVYTSLNVSQDAITLFGFL 60 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K A +I Sbjct: 61 TPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKGAQKI 120 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATTAVVS 183 + ELKG D+S + + I + L++LG+ Q A AV Sbjct: 121 ILELKG---------SIDLSQIETAASVISRPEDTGSEQVVEGLISLGWRQQDALHAVQE 171 Query: 184 VLKKEK-----NIADDSQIIRLALRAI 205 V + + D ++++LAL ++ Sbjct: 172 VCRSNDIATPLSNEDVPRVLKLALTSL 198 >gi|145594353|ref|YP_001158650.1| Holliday junction DNA helicase RuvA [Salinispora tropica CNB-440] gi|189045768|sp|A4X5X2|RUVA_SALTO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145303690|gb|ABP54272.1| Holliday junction DNA helicase subunit RuvA [Salinispora tropica CNB-440] Length = 200 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +++V GV + C T++ L ++G L +R+D + L Sbjct: 1 MIASVRGVVTATGPDHAVLEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D + F LLQ+ GVG R+A VL+ + +I ++ + ++PGI K Sbjct: 60 YGFADDDAKALFELLQTASGVGPRLAQAVLAVHPPEAVRAAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ ALV LG+ QA A Sbjct: 120 AERLVLELRDRIGPV---------PVGADSAAGVTTGAWPEQVRQALVGLGWTAAQADQA 170 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 V +V + + + ++R A+R + Sbjct: 171 VTAVAETVDGAVPPVPVLLRQAIRLL 196 >gi|320547648|ref|ZP_08041933.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus equinus ATCC 9812] gi|320447723|gb|EFW88481.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus equinus ATCC 9812] Length = 197 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVVEAGGLGYIINV-ANPYSFSDLMNQDVQIYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + + + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179 A +++ +L GK D+S N + ++ + A+ AL+ LGY + Sbjct: 120 AQQVVLDLAGKF--------ADVSMENGLASQAKAVANEQLEEAMEALLALGYKAAE-LK 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + A Q I+ +L+ + Sbjct: 171 KIRKFFEGTNETA--EQYIKSSLKML 194 >gi|302389938|ref|YP_003825759.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani DSM 16646] gi|302200566|gb|ADL08136.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani DSM 16646] Length = 192 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 17/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 M+ I+G + + ++ ++DV G+ + + + T + + + LF H++++ Sbjct: 1 MLDYIRGRLRDIGPNFAILDVAGLGFRCFISLNTYNKIKLLKNSKVLLFTCLHVKEEGAE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF +R+ F+LL V GVG RVA+ +LS + L I+ ++ K + +PGI K Sbjct: 61 LFGFSELHEREAFILLNKVSGVGPRVALSILSWLEPKRLKSVIMSEDVKTLTSVPGIGNK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ ELK K +L + + + A AL+ LG+ + Sbjct: 121 TAQKIIFELKDKIKNL------------PVETVSQTEQAALCEARDALLALGFSIGEVQR 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + +II ALR I+ Sbjct: 169 VLNEI----GTATTVEEIISNALRLIA 191 >gi|269122262|ref|YP_003310439.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC 33386] gi|268616140|gb|ACZ10508.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC 33386] Length = 205 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + DYV ++V G+ Y I+ ++T L + D LF+ T++++D L Sbjct: 1 MFEYIRGELTVKKIDYVALEVNGIAYKIFISLKTYDMLTE--DTEKLFIYTNVKEDDFSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R+ F L S+ GVG ++ + +LS E+++ +I +N+K++ ++PG+ K Sbjct: 59 YGFKTESERELFKALVSISGVGPKLGLAILSTFNTQEVIDIVIEENAKLLVRVPGLGQKK 118 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LK K L+ + + QD S + AL +LGY + Sbjct: 119 AQKLIVDLKDKVKKLNVIGIAQDGSHDTASSVSSTKALIMKEDLKLALESLGYSNADVSK 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 + ++ + IR L+ I Sbjct: 179 WIKD--EEIEKYERVEDAIRDILKKIQS 204 >gi|6729740|pdb|1BVS|A Chain A, Ruva Complexed To A Holliday Junction. gi|6729741|pdb|1BVS|B Chain B, Ruva Complexed To A Holliday Junction. gi|6729742|pdb|1BVS|C Chain C, Ruva Complexed To A Holliday Junction. gi|6729743|pdb|1BVS|D Chain D, Ruva Complexed To A Holliday Junction. gi|6729744|pdb|1BVS|E Chain E, Ruva Complexed To A Holliday Junction. gi|6729745|pdb|1BVS|F Chain F, Ruva Complexed To A Holliday Junction. gi|6729746|pdb|1BVS|G Chain G, Ruva Complexed To A Holliday Junction. gi|6729747|pdb|1BVS|H Chain H, Ruva Complexed To A Holliday Junction Length = 203 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ G+ Y + L+ L + G L +R+D + L Sbjct: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLNQ-GSQARLVTAMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F+ L SV GVG R+AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL K + + + + + ALV LG+ QA A Sbjct: 120 AERIVLELADKVGPVGASGLTVGTAADGNAVRGS--------VVEALVGLGFAAKQAEEA 171 Query: 181 VVSVLKKE---KNIADDSQIIRLALRAI 205 VL E S +R AL + Sbjct: 172 TDQVLDGELGKDGAVATSSALRAALSLL 199 >gi|229814935|ref|ZP_04445273.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM 13280] gi|229809422|gb|EEP45186.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM 13280] Length = 207 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 1/190 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +IDV G+ + + T S L ++G L+ +R+D L Sbjct: 1 MISILNGTLIEATAGSAVIDVNGIGFELGISATTASSLAQVGSPTRLYTRMVVREDSCTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV GVGA++A+ +LS T EL +++++ K +A +PG+ K Sbjct: 61 FGFATKDERTMFDKLVSVSGVGAKLALAILSSFTVPELYTLVMMEDDKGMATVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179 A R++ ELKG S+ V A + A +A +AL+++G+ + T Sbjct: 121 AQRLILELKGVFEKDRSLAGSAAPTVPLPFAPAAAAAPSAIEDATAALLSMGFTAAEVTL 180 Query: 180 AVVSVLKKEK 189 A+ K+ Sbjct: 181 ALDGYDGKDM 190 >gi|330936721|gb|EGH40906.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi str. 1704B] Length = 119 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKK 119 >gi|120403560|ref|YP_953389.1| Holliday junction DNA helicase RuvA [Mycobacterium vanbaalenii PYR-1] gi|166230573|sp|A1T883|RUVA_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119956378|gb|ABM13383.1| DNA recombination protein RuvA, domain I [Mycobacterium vanbaalenii PYR-1] Length = 195 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIAAVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGAEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L V G+G +A+G L+ L ++I + + +IP + K Sbjct: 60 YGFADSDARNLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDVTALTRIPKVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+ K + + V H P + ALV LG+ Q QA A Sbjct: 120 AELLVLTLRDKVGT------STSAGVASAGGHGIRGP-----VVEALVGLGFAQKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL E S + R AL + Sbjct: 169 TDKVLANEPEATTSSAL-RAALSML 192 >gi|220904537|ref|YP_002479849.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868836|gb|ACL49171.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 204 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 7/192 (3%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + +LI GV Y + P TLS L G+ L+ +R+D + Sbjct: 1 MIAYLEGRLAETWGNTCLLITENGVGYAVALPAHTLSVLPGRGEHLALYTSLAVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F +L S+ VGAR A+ +LS +L + ++ + ++ GI K Sbjct: 61 LFGFATFEERQTFEVLISISKVGARTALSILSIYRPEDLRRIVFEEDVMALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A + ELK K D+ + S + + L NLGY +D+ Sbjct: 121 TAQHVFLELKYKLK------VDDVPQAAVLASTGERPGSVFRDVLDGLANLGYAEDECAP 174 Query: 180 AVVSVLKKEKNI 191 V +L +E ++ Sbjct: 175 MVKKLLHEEPDL 186 >gi|167629898|ref|YP_001680397.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum Ice1] gi|167592638|gb|ABZ84386.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum Ice1] Length = 274 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 81/134 (60%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + GL +D +L+DV GV Y ++ P L+ L ++G + + R+DQ+ L Sbjct: 1 MIAFLRGRLVGLGDDCLLLDVSGVGYRVFVPATMLASLPQVGRDILIHTFYYAREDQVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ + +F LL V GVG +V +G+LS + E+ +II ++ + +IPGI K Sbjct: 61 YGFLTEEELAFFRLLLEVSGVGPKVGLGILSAYSVVEVQRAIIAEDVLALTRIPGIGRKT 120 Query: 121 ASRIMTELKGKAIS 134 A R++ EL+ K + Sbjct: 121 AQRLVIELRDKLLK 134 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 5/85 (5%) Query: 128 LKG-----KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 LK +S + + A S A SAL LGY ++A A+V Sbjct: 189 LKDPSSDRHVPEGTSPLARRRKKAVPAGADRMWKTSPRDEAFSALQVLGYTANEARDALV 248 Query: 183 SVLKKEKNIADDSQIIRLALRAISC 207 AD I+ ALR + Sbjct: 249 EAAALVPPDADVEAWIKGALRFLGS 273 >gi|162448567|ref|YP_001610934.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56'] gi|161159149|emb|CAN90454.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56'] Length = 244 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 64/213 (30%), Positives = 106/213 (49%), Gaps = 15/213 (7%) Query: 2 IGKIKGNIEGLY-EDYVLIDVQGVCYIIYCPI------RTLSCLGKIG-DFCTLFVETHM 53 IG++ G++ E V++DV GV Y + P+ R ++ K G D TLFV TH+ Sbjct: 38 IGRLSGHVVEEGDEGTVVLDVSGVGYEVTVPLGAVGRARGIAANAKAGSDAITLFVHTHV 97 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+D + L+GF + DR F +L + +G ++AM +LS + A EL I + + + I Sbjct: 98 REDALLLYGFATREDRAAFRVLIGISSIGPKIAMAILSALGAGELAAVITRRETARLTAI 157 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ K A R++ ELK K + L + + ++ + + + SAL +GY Sbjct: 158 PGVGKKTAERLVLELKDKLVHLPA------APLSPAASPPVATGAKQDLLHSALTRMGYR 211 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A AV L + A ++R AL +S Sbjct: 212 PAEAERAVT-ALGARVDSAPLGDLVRDALALLS 243 >gi|257784697|ref|YP_003179914.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469] gi|257473204|gb|ACV51323.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469] Length = 210 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 5/210 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + + ++DV GV Y + T + L + G+ T+ +R+D + Sbjct: 1 MIVQLTGTLVSVTPSVAVLDVNGVGYELGISASTAAALPQAGEAGVTVLTRMVVREDSME 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S +R F L+++ GVG ++A+ VLS T +L + + + + G+ K Sbjct: 61 LFGFASREERALFDRLRAISGVGPKLALSVLSTFTPQQLAVIVATNDGNRLKSVSGLGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQ--QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL + + Q S + ++ S AI AL+ +G+ +A Sbjct: 121 KAERLIIELSDVFAKDTELKQLVGLTSPTDFASIPKPTVTSVESEAIEALLGMGFTSQEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAISC 207 T A+ +E I ALR + Sbjct: 181 TLALEG--YEEVGAITIEAAIGYALRRLGS 208 >gi|314955639|gb|EFT00041.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL027PA1] Length = 194 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + +V++D GV + CP T + +I +L +R++ + L+GF+ D Sbjct: 2 VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K A++++ EL Sbjct: 61 RDVFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186 K K +L+ + + + LV LG+ A AV V LK Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173 Query: 187 KEKNIADDSQIIRLALRAIS 206 + ++R ALR+++ Sbjct: 174 EADPAMTIGNLMRAALRSLA 193 >gi|218244912|ref|YP_002370283.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801] gi|257057937|ref|YP_003135825.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802] gi|226725438|sp|B7JZG7|RUVA_CYAP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218165390|gb|ACK64127.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801] gi|256588103|gb|ACU98989.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802] Length = 210 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54 MI +KGN ++ ++++V V Y + P R L + + +F ++ Sbjct: 1 MISYLKGNPIETLKNTQNRILLILEVNQVGYEMQIPSRFARELSQNPRETLQVFTHLQVK 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +Q L+GF + +R+ F L SV G+GA++A+ ++ + ELV++I+ N + ++Q P Sbjct: 61 DEQPILYGFATAAERELFRQLVSVSGIGAQLAIALIDTLGLEELVQAIVNGNIRTLSQTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A RI ELK K +V + + + L+ LGY Sbjct: 121 GVGQKTAERIALELKTKLSQWRKLVGITLPSTS-----AIPSLEVLEDVEMTLLALGYTN 175 Query: 175 DQATTAVVSVLKKEKNI--ADDSQIIRLALRAIS 206 ++ A+ ++ + + + + + IR A+ +S Sbjct: 176 EEINKAISTLSQDNQMLKNTNSEEWIREAIAWLS 209 >gi|330466911|ref|YP_004404654.1| Holliday junction DNA helicase RuvA [Verrucosispora maris AB-18-032] gi|328809882|gb|AEB44054.1| Holliday junction DNA helicase RuvA [Verrucosispora maris AB-18-032] Length = 200 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +I+V GV + C T++ L ++G L +R+D + L Sbjct: 1 MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D + F LLQ+ GVG R+A VL+ T + ++I ++ + ++PGI K Sbjct: 60 YGFADDDAKALFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ AL+ LG+ QA A Sbjct: 120 AERLVLELRDRIGPV---------PVGADGAAGVTGGAWPEQVRQALIGLGWTASQADQA 170 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 V +V + + +++ A+R + Sbjct: 171 VAAVAETVDGAAPPVPVLLKQAIRLL 196 >gi|313679904|ref|YP_004057643.1| holliday junction DNA helicase subunit ruva [Oceanithermus profundus DSM 14977] gi|313152619|gb|ADR36470.1| Holliday junction DNA helicase subunit RuvA [Oceanithermus profundus DSM 14977] Length = 195 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + ED ++ + G+ + ++CP TL L ++G+ L +R+D + L Sbjct: 1 MVRFLEGVVLEATEDRAIVSLHGLGFEVFCPTGTLGRL-RVGETARLHTRLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +WF LL V GVG RVA+G+LS + A L +++ + K++ PG+ K+ Sbjct: 60 YGFHDPRLLEWFDLLVGVSGVGPRVALGLLSALPADLLGQAVTGDDPKLLTAAPGVGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + + + + A + L+ LG+ + Q Sbjct: 120 AERIVLELKTRLPDHLAGLAPSAAPIENPAAGEAAAA---------LITLGFRETQVHAV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K+ A ++IRLALR + Sbjct: 171 VQKLAAKQPE-AGAEELIRLALREL 194 >gi|116490641|ref|YP_810185.1| Holliday junction resolvasome, DNA-binding subunit [Oenococcus oeni PSU-1] gi|122277175|sp|Q04GA2|RUVA_OENOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116091366|gb|ABJ56520.1| Holliday junction DNA helicase subunit RuvA [Oenococcus oeni PSU-1] Length = 194 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I+ + YV IDV G+ + ++ P D T+F E +R +QI L Sbjct: 1 MYDFLTGIIKTIAAGYVGIDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNQISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G + A+ +++ L+ ++ K + + PGI K Sbjct: 58 YGFKTVKERNLFQKLLNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK S + ++ + +A++ALV LG+ + Sbjct: 118 AQQIVLDLKGKLGDFSKNI--------APMKNLLENSAELDDALAALVALGFSSKEVNK- 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L + D+ I+ L+ + Sbjct: 169 INPKLASLGELTTDA-YIQKGLKLL 192 >gi|295398601|ref|ZP_06808633.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus viridans ATCC 11563] gi|294973202|gb|EFG48997.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus viridans ATCC 11563] Length = 210 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 8/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQDQI 58 M + G +E +Y D V+++ G+ Y IY KIG +++ + ++ I Sbjct: 1 MYEFMIGQVESVYPDAVILETGGIGYYIYM-ANPYRFTDKIGQDRPVKIWLYQSVSENDI 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 RL+GF S ++ F+ L SV G+G + A+ +LS LV +I +++ + + PG+ Sbjct: 60 RLYGFKSQEEKIIFLQLISVSGIGPKSALSILSLDDNAGLVAAIQAEDNAFLMKFPGVGK 119 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKE---QAHICSMPSFAINAISALVNLGYGQD 175 K A +I+ +LK K + + + Q F A+ +LGY Q Sbjct: 120 KTAGQIVLDLKEKLPKVLAESPSSALFKQESLDIQGPDQVNLPFMHELEEAMASLGYSQR 179 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V + + ++ IR+AL+ I Sbjct: 180 EINRVVKNA--DFTGVTATAEAIRIALKFI 207 >gi|310287480|ref|YP_003938738.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17] gi|309251416|gb|ADO53164.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17] Length = 206 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + +I+V GV Y + G +F + QD + L Sbjct: 2 MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +++ PG+ K Sbjct: 61 FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ + D +++ A I LV+LG+ A A Sbjct: 121 AQKIILELAGRIDLDQIRPEADGPSESRDPG--------ARQVIEGLVSLGWRPQTAEEA 172 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D ++++LAL ++ Sbjct: 173 VRQACDAASIATPISAEDVPRVLKLALSSL 202 >gi|317508678|ref|ZP_07966333.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC BAA-974] gi|316252999|gb|EFV12414.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC BAA-974] Length = 199 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+V+++ G+ Y + T + + GD L +R+D L Sbjct: 1 MIASVRGEAVEVGADHVVVECAGLGYHVVVLPST-AAMAARGDELRLVTSFIVREDAQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +L++V GVG ++AM VLS + +L +I + + ++PG+ ++ Sbjct: 60 YGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPAQLRRAIGEGDLAALTRVPGVGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + + LV LG+ A +A Sbjct: 120 AERLALELKEKVGV--------GVGATGKPGAPEGSALVRQQVVDGLVGLGFALKPAESA 171 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 SVL ++++ A + +R AL Sbjct: 172 ADSVLAEDQD-ASAAVALRGAL 192 >gi|307153472|ref|YP_003888856.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822] gi|306983700|gb|ADN15581.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822] Length = 209 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMR 54 MI +KG +++ ++++V + Y I P R L +F +R Sbjct: 1 MINYLKGKTIQIHKTATNRLQLILEVNQIGYEIQIPSRLARKLTLDDDQTIQIFTHLQIR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF + +R F L SV GVGA+ A+ ++ + ELV +I+ N + +A+ P Sbjct: 61 EDQQILYGFATSEERDLFRQLISVSGVGAQSAIALIDTLGLEELVRAIMSNNGRTLAKSP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI K A RI+ ELK K + + I L+ LGY Sbjct: 121 GIGPKTAERILLELKTKVSQWQPQGLKTSVSAGLPRKEIL------EEVEMTLLALGYSD 174 Query: 175 DQATTAVVSVLKKEK--NIADDSQIIRLALRAIS 206 ++ T A+ ++ + + ++ + ++ A+ +S Sbjct: 175 EEITGAISAISQDNQLLKNSNIEEWLKSAITLLS 208 >gi|311064395|ref|YP_003971120.1| holliday junction DNA helicase RuvA [Bifidobacterium bifidum PRL2010] gi|310866714|gb|ADP36083.1| RuvA Holliday junction DNA helicase [Bifidobacterium bifidum PRL2010] Length = 205 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + +I+V GV Y + G +F + QD + L Sbjct: 1 MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +++ PG+ K Sbjct: 60 FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ + D +++ A I LV+LG+ A A Sbjct: 120 AQKIILELAGRIDLDQIRPEADGPSESRDPG--------ARQVIEGLVSLGWRPQTAEEA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D ++++LAL ++ Sbjct: 172 VRQACDAASIATPISAEDVPRVLKLALSSL 201 >gi|227524332|ref|ZP_03954381.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC 8290] gi|227088563|gb|EEI23875.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC 8290] Length = 198 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + Y+++ V G+ Y+IY + + ++V + I L Sbjct: 1 MYEFMDGQIVDITPAYIVLLVNGIGYLIYTADPYRFNVDQ-NKTIRVYVYQSVSDSAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F L +V G+G + A+ +L+ + LV +I ++ K + + PG+ K Sbjct: 60 YGFYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVLAISNKDVKFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK LS +VQ EQ +AISAL LGY Q A Sbjct: 120 AQQIILDLQGKVGDLSQIVQARSGQSASEQ------SDELRDAISALEALGYSAKQID-A 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L K+K + D + + L L+ + Sbjct: 173 IRLELGKDKALTTD-EYLSLGLKLL 196 >gi|293192652|ref|ZP_06609606.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus F0309] gi|292820159|gb|EFF79156.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus F0309] Length = 207 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 9/204 (4%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + + D++ I V G+ + ++ + T+F +R+D + L+ Sbjct: 8 ISILRGTVASVGLDHIDIVVGGIGFRVHVTPA-FAQGASRDQEMTVFTSMIVREDLMTLY 66 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF S +R F L SV G+G ++A+ L+ + +L ++ Q+ + +IPG+ K A Sbjct: 67 GFESADERDVFTKLLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSALQRIPGVGKKSA 126 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R+ E+ K + + A + + A +ALV LG+ + QA A+ Sbjct: 127 QRMALEIGDKLGT-----PAALPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + +D ++R AL + Sbjct: 182 EKLAGSGLGASD---MLRAALVTL 202 >gi|227495489|ref|ZP_03925805.1| possible crossover junction endodeoxyribonuclease [Actinomyces coleocanis DSM 15436] gi|226831036|gb|EEH63419.1| possible crossover junction endodeoxyribonuclease [Actinomyces coleocanis DSM 15436] Length = 195 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 15/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +G ++ + ++++ G I + T + + + G+ L+ +R+D + L Sbjct: 1 MISFFQGEVQAIKPGHLVLVNGGFGLSIQVTVGTANQV-RHGELVGLYTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F +LQ+V +G R A+ L +T EL +++I + K + +IPGI K Sbjct: 60 YGFLTEDERDTFNVLQTVSKIGPRTALQALEALTPDELRQAVISSDEKTLQRIPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K + + V+ + E I+ LV+LGY + A A Sbjct: 120 AQRMLIEIGDKLGTPTGNVKLGTTVSVAE-----------TEVIAGLVSLGYSEVSAQAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V + + + S+++R AL + Sbjct: 169 VEPF---QGSDMNTSEMLRAALIQLGT 192 >gi|238063870|ref|ZP_04608579.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp. ATCC 39149] gi|237885681|gb|EEP74509.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp. ATCC 39149] Length = 200 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 10/173 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +++V GV ++C TL+ L +IG L +R+D + L Sbjct: 1 MIASVRGTVTATGPDHAVVEVGGVGLAVHCAPGTLAEL-RIGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +Q F LLQ+ GVG R+A VL+ T + ++I ++ + ++PGI K Sbjct: 60 YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ EL+ + + V + A + ++ ALV LG+ Sbjct: 120 AERLVLELRDRIGPV---------PVGADGAAGVTGGAWPDQVRQALVGLGWT 163 >gi|226355827|ref|YP_002785567.1| Holliday junction DNA helicase RuvA [Deinococcus deserti VCD115] gi|226317817|gb|ACO45813.1| putative Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus deserti VCD115] Length = 202 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 7/204 (3%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + E+ +I GV Y + CP TL L +G L +R+D LF Sbjct: 5 IAYLSGVVREVRENSAVIVAGGVGYEVQCPAGTLGKLV-VGQNAELSTRFVVREDAQLLF 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + F L+ V GVG ++ + +LS + + L + ++ + K+++ + G+ K A Sbjct: 64 GFSDADSLKLFDLVTGVSGVGPKLGLSLLSAMPVSALAQGLMAGDVKLLSSVSGVGKKTA 123 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ EL+ K + V + +AI AL+ LG+ + Q V Sbjct: 124 ERLVLELQNKVPE-----HLAAAGVPAGTRATPVSSTAGRDAIEALLALGFREAQVRGVV 178 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +L + + D+ +IR L + Sbjct: 179 AELLGADPTQSADA-LIRKGLGRL 201 >gi|290961821|ref|YP_003493003.1| Holliday junction DNA helicase [Streptomyces scabiei 87.22] gi|260651347|emb|CBG74469.1| holliday junction DNA helicase [Streptomyces scabiei 87.22] Length = 201 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V G+ + C TLS L + G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RRGQQAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI + Sbjct: 60 YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALIAVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177 A +++ ELK + V + +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAVGTPVTQGWRDQLHAALIGLGYATREADEA 169 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + Q+++ AL+ ++ Sbjct: 170 VAAVAPQAEAAPGTPQVGQLLKAALQTLN 198 >gi|146328995|ref|YP_001210061.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus VCS1703A] gi|166230547|sp|A5EXH7|RUVA_DICNV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146232465|gb|ABQ13443.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus VCS1703A] Length = 204 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 6/201 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + D +LI+V GV Y + P ++ ++G+ T+FV R+D L Sbjct: 1 MIGWLQGRVLYKQNDQLLINVCGVGYELTVPQSVMAS-AQVGEELTVFVHHVQREDGQFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S L RQ F L V G+G ++++ +LS +T L+ ++ Q S ++ GI K Sbjct: 60 YGFSSFLQRQLFRELIRVSGIGPKLSIVILSGLTPEALIAAVRAQESAPFLRLSGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL + + + E + S + AI AL+ L +A Sbjct: 120 AERLLIELHDRVEKNDLFLCDE-----SESSRAPIALSASEEAIQALIALELAPAEAELW 174 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 V K AD + +I+ A Sbjct: 175 VKKAQKTLAEDADSAALIKTA 195 >gi|320528322|ref|ZP_08029484.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204] gi|320131236|gb|EFW23804.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204] Length = 198 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D+V+++ + Y + P L D ++ H+ ++ + L Sbjct: 4 MIAFVKGKVASYGADWVVVNCHDIGYQMAYPHPENLHL---NDEVFIYTYLHITENDMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++ F+ L SV+G+G + AMG+LS+ +V +I + ++ ++PGI K Sbjct: 61 FGFESQDEKALFLKLISVKGLGPKTAMGMLSKCGYQSIVSAIESGDVTLLKKMPGIGAKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK +S+ + + S P+ A+ L NLGY Q + +A Sbjct: 121 ASQIVLDLKGKLVSV---------PTSSPKQDTVSYPAEIREALDGLKNLGYKQGE-LSA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++ + + + ++L L+ + Sbjct: 171 VANMMSENPGLT-TEKYLKLGLQFL 194 >gi|262283650|ref|ZP_06061415.1| Holliday junction DNA helicase motor protein [Streptococcus sp. 2_1_36FAA] gi|262260707|gb|EEY79408.1| Holliday junction DNA helicase motor protein [Streptococcus sp. 2_1_36FAA] Length = 197 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 100/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFAAEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + D+S + QA + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVV----IAGDDLSAKDAVQA--SNENQELEEAMEAMLALGYKAAE---- 169 Query: 181 VVSVLKKEKNIADDSQ-IIRLALRAI 205 + + K + D ++ I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|224283112|ref|ZP_03646434.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium bifidum NCIMB 41171] gi|313140261|ref|ZP_07802454.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium bifidum NCIMB 41171] gi|313132771|gb|EFR50388.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium bifidum NCIMB 41171] Length = 205 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + +I+V GV Y + G +F + QD + L Sbjct: 1 MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +++ PG+ K Sbjct: 60 FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ + D +++ A I LV+LG+ A A Sbjct: 120 AQKIILELAGRIDLDQIRPEADGPSESRDPG--------AKQVIEGLVSLGWRPQTAEEA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D ++++LAL ++ Sbjct: 172 VRQACDAASIATPISAEDVPRVLKLALSSL 201 >gi|162447235|ref|YP_001620367.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A] gi|189045740|sp|A9NF61|RUVA_ACHLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161985342|gb|ABX80991.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A] Length = 186 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 99/202 (49%), Gaps = 21/202 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ GV Y++ P+ KIG+ T+ H+R+D +L Sbjct: 1 MYRYIKGIVTQINPQHIVVENNGVGYLVLSPVPYQY---KIGEETTVVTYLHVREDIFQL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F+ L SV G+G + AM +++ +++ +I ++K + + PGI MK Sbjct: 58 YGFKDEETLNLFLKLISVSGIGPKSAMSIVAFDDTNKIIAAIETSDAKYLTKFPGIGMKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++ + + + + +AL LGY + + + Sbjct: 118 AQQIILDLKGKLV--------------NDELDMQLLSDNSKDVAAALEALGYNKKEIAKS 163 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + V + D ++ ++ AL Sbjct: 164 LKHVNFDQ----DLNKALKEAL 181 >gi|294790877|ref|ZP_06756035.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304] gi|294458774|gb|EFG27127.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304] Length = 209 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 10/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G+I + D ++IDV GV + + R + L G + + +D + L Sbjct: 1 MIASLEGDILSIEPDGIVIDVNGVGFSVRMSARDTAQLHA-GSHERIITLMTVSRDALSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F+ LQ V G+G RVAM +LS ++A EL +I + + + PG+ K Sbjct: 60 YGFLNPSSKKLFIQLQKVSGIGPRVAMAILSTLSAEELATAIRDNDVTALTRAPGLGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G + Q+ + + + +M I LV+LG+ Q A A Sbjct: 120 AQKIILELHGTIDFTNLDPDQEQAAGHDTEKQDHNM----RQVILGLVSLGWQQRDAFGA 175 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 +K+ + D +++R AL + Sbjct: 176 TKEAMKQLSLGEPLDAQDVPRVLRTALSDL 205 >gi|327450649|gb|EGE97303.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL087PA3] Length = 194 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + +V++D GV + CP T + +I +L +R++ + L+GF+ D Sbjct: 2 VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K A++++ EL Sbjct: 61 RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186 K K +L+ + + + LV LG+ A AV V LK Sbjct: 121 KDKVAALTPRGASVSGAPH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173 Query: 187 KEKNIADDSQIIRLALRAIS 206 + ++R ALR+++ Sbjct: 174 EADPAMTIGNLMRAALRSLA 193 >gi|313888460|ref|ZP_07822127.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845489|gb|EFR32883.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 194 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + Y++++ G+ YI+ R L + + + + +R+D L Sbjct: 1 MIEFLRGRVHSTDRGYLVLESNGIGYIVNMVERELHTFYE-NEEVFINIRLVLREDAAIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LL SV G+G ++AMG+L + + II ++ K + ++PGI K Sbjct: 60 YGFRHIETRDAFDLLTSVTGIGPKLAMGILDGDDVFNIAKYIISKDEKSLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K L+ + + + +A+ AL++LGY A A Sbjct: 120 AQRIILELKDKVEKLAL-------DLTSMTDDVEIIEEKDDSAVEALISLGYNVYDAKKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V D S+ IR AL+ + Sbjct: 173 LEKV----DPSLDISERIREALKLM 193 >gi|295396081|ref|ZP_06806264.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium mcbrellneri ATCC 49030] gi|294971022|gb|EFG46914.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium mcbrellneri ATCC 49030] Length = 194 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + + + GV ++ + + G L E +R+D + L Sbjct: 1 MIRYLEGTVHTVSANSLTVVTSGVGREVFVTPAVAGRV-RTGSEVALHTELIVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F L GVG ++A+ +LS ++ ++ +I KV+ +PG+ K+ Sbjct: 60 YGFDTPSELKLFSTLLGANGVGPKLALAILSVLSPDQVYGAISDNTPKVLTAVPGVGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ +L+GK + S+V + + ALV LG+ + A A Sbjct: 120 AAKLIVDLQGKVPATSAVPSSGAGPAS-------------AEVVQALVGLGWKEATAIKA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V E A + +++ ALR + Sbjct: 167 VEAV-APEMGQASVADMLKAALREL 190 >gi|44888463|sp|Q83GK0|RUVA_TROWT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 194 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 109/206 (52%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V++++ G+ +++ P ++ L+ +R+D + L Sbjct: 1 MIASLSGLLEAVRPGSVVVNMHGIGFLVRVPQSFN---PEVDAEVKLYTSLQVREDSVSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S L+ F L ++ GVG RVA+ +LS +T E+ +++ + K + ++ G+ K+ Sbjct: 58 YGFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKL 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +L GK S+ ++ V++ + + AL+ LG+ + ++ A Sbjct: 118 AGTIVLQLAGKLTSVPLENRKQEQAVDR-----------SAEIVQALIGLGWQRQESAAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V SVL+K++++ +I+R ALR ++ Sbjct: 167 VESVLEKDQSLT-MPEILRNALRYLA 191 >gi|22298075|ref|NP_681322.1| Holliday junction DNA helicase motor protein [Thermosynechococcus elongatus BP-1] gi|34222868|sp|Q8DLG1|RUVA_THEEB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|22294253|dbj|BAC08084.1| Holliday junction DNA helicase [Thermosynechococcus elongatus BP-1] Length = 210 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 M ++G + G + ++++V GV Y + L + +F +R+ Sbjct: 1 MFVYLRGTVVGHQSEGGHRCALILEVNGVGYRLLVTSHLLQQYPPRPEVVQIFTHLSIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 DQ+ L+GF S +R F+ L V GVG ++A+ +L + ELV++I+ N++ +++ PG Sbjct: 61 DQMLLYGFASAAERDLFLRLIRVNGVGPQMALSLLDTLPLPELVQAIVSGNTRRLSRAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK + + + + + A+ GY Sbjct: 121 VGHKTAERIALELKAALSAWRQEMGFTTASSGLPSEAVREELELTLLAL------GYSDR 174 Query: 176 QATTAVVSV--LKKEKNIADDSQIIRLALRAISC 207 + A+ +V N +D +R A+ +S Sbjct: 175 EIAAALTAVGQTTTLPNNSDPEAWLREAIAWLSA 208 >gi|293395808|ref|ZP_06640090.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] gi|291421745|gb|EFE94992.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] Length = 127 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 64/119 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VL++ GV Y ++ P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITALVKLPGVGKK 119 >gi|284048863|ref|YP_003399202.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM 20731] gi|283953084|gb|ADB47887.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM 20731] Length = 204 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I G ++ + ++ L+D QGV Y I+ LS + ++ ++ +R+D ++L Sbjct: 1 MIGFITGRVDHIGTNFCLVDTQGVGYRIFLNTGDLSRI-QVDQKVKIYTYLSVREDALQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS F L +V G+G +VA G+LS ++ ++ K + ++PGI K Sbjct: 60 FGFLSYDAYSLFTQLITVSGIGPKVAQGILSAAKVDAFYLAVKSRDLKFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK ++ ++++ + + + L LGY Q + Sbjct: 120 AERLLLELKD--MTGPEGLEEEGTAGGFDGDVPEDDTTTLGAVAEGLSYLGYTQGE---- 173 Query: 181 VVSVLKKEKNIADD--SQIIRLALRAIS 206 + VLKK K AD +++ ALR ++ Sbjct: 174 IAQVLKKLKVTADSRAEDLLKEALRLLA 201 >gi|313764321|gb|EFS35685.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL013PA1] gi|313772296|gb|EFS38262.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL074PA1] gi|313792007|gb|EFS40108.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL110PA1] gi|313802043|gb|EFS43277.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL110PA2] gi|313807654|gb|EFS46141.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL087PA2] gi|313810161|gb|EFS47882.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL083PA1] gi|313812811|gb|EFS50525.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL025PA1] gi|313815859|gb|EFS53573.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL059PA1] gi|313818691|gb|EFS56405.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL046PA2] gi|313820461|gb|EFS58175.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL036PA1] gi|313822733|gb|EFS60447.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL036PA2] gi|313825333|gb|EFS63047.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL063PA1] gi|313827628|gb|EFS65342.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL063PA2] gi|313830492|gb|EFS68206.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL007PA1] gi|313833528|gb|EFS71242.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL056PA1] gi|313838864|gb|EFS76578.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL086PA1] gi|314915311|gb|EFS79142.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA4] gi|314918138|gb|EFS81969.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL050PA1] gi|314920215|gb|EFS84046.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL050PA3] gi|314925070|gb|EFS88901.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL036PA3] gi|314931738|gb|EFS95569.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL067PA1] gi|314958035|gb|EFT02138.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL002PA1] gi|314960393|gb|EFT04495.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL002PA2] gi|314962663|gb|EFT06763.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL082PA1] gi|314967471|gb|EFT11570.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL037PA1] gi|314973492|gb|EFT17588.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL053PA1] gi|314976172|gb|EFT20267.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL045PA1] gi|314978569|gb|EFT22663.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL072PA2] gi|314983806|gb|EFT27898.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA1] gi|314987987|gb|EFT32078.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA2] gi|314989797|gb|EFT33888.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA3] gi|315077879|gb|EFT49930.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL053PA2] gi|315080504|gb|EFT52480.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL078PA1] gi|315084175|gb|EFT56151.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL027PA2] gi|315085518|gb|EFT57494.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL002PA3] gi|315088425|gb|EFT60401.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL072PA1] gi|315096039|gb|EFT68015.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL038PA1] gi|315098667|gb|EFT70643.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL059PA2] gi|315101330|gb|EFT73306.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL046PA1] gi|327326319|gb|EGE68109.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL096PA2] gi|327330390|gb|EGE72139.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL097PA1] gi|327331806|gb|EGE73543.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL096PA3] gi|327443583|gb|EGE90237.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL013PA2] gi|327445787|gb|EGE92441.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL043PA2] gi|327448230|gb|EGE94884.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL043PA1] gi|327453274|gb|EGE99928.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL092PA1] gi|327454013|gb|EGF00668.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL083PA2] gi|328753271|gb|EGF66887.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL025PA2] gi|328753338|gb|EGF66954.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL020PA1] gi|328754067|gb|EGF67683.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL087PA1] gi|328760719|gb|EGF74285.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL099PA1] Length = 194 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + +V++D GV + CP T + +I +L +R++ + L+GF+ D Sbjct: 2 VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K A++++ EL Sbjct: 61 RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186 K K +L+ + + + LV LG+ A AV V LK Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173 Query: 187 KEKNIADDSQIIRLALRAIS 206 + ++R ALR+++ Sbjct: 174 EADPAMTIGNLMRAALRSLA 193 >gi|16127467|ref|NP_422031.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15] gi|221236280|ref|YP_002518717.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus NA1000] gi|20455260|sp|Q9A3G7|RUVA_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766950|sp|B8H455|RUVA_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13424921|gb|AAK25199.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15] gi|220965453|gb|ACL96809.1| Holliday junction DNA helicase ruvA [Caulobacter crescentus NA1000] Length = 205 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E+ LIDV GV Y++ C RTL L +G+ L +E+ + +R Sbjct: 1 MIGRLRGAVAEVGEEEALIDVMGVGYLVRCGHRTLQRLPALGEETLLHIESQWSESAGLR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ DR+ F+LLQ++QGVG + AM VL ++ EL ++ ++ + + G+ K Sbjct: 61 LYGFLTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK K I+ V+ MS + P+ +A++AL+ LG + A Sbjct: 121 LALRIVTELKDKPITDGPVL---MSAPTSSAPSAPAKPAPTGDAVAALMGLGVAEVNARR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + + A +I+ L+ + Sbjct: 178 VVEAAAAELGEEATVQALIKAGLKEL 203 >gi|331701280|ref|YP_004398239.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus buchneri NRRL B-30929] gi|329128623|gb|AEB73176.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus buchneri NRRL B-30929] Length = 199 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++++ V GV Y+I + + +++ + I L Sbjct: 1 MFEFLEGTVVDITPTHIVLLVGGVGYLINTADPYRFNVDE-KKVIRVYIYQSVSDTAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + D+Q F L SV G+G + A+ +L+ L+ +I ++ K + + PG+ K Sbjct: 60 FGFATIEDKQIFEKLISVSGIGPKSALAILAGNDRDGLITAINNEDVKFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +++GK +++ + +A+SAL LGYG Q A Sbjct: 120 ARQIILDMQGKLDDIATN-----GVSLAQPLGSNEKSPELADALSALEALGYGAKQIA-A 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L K+ +++ D + + L L+ + Sbjct: 174 IEPDLVKQADLSTD-EYLSLGLKLL 197 >gi|237738311|ref|ZP_04568792.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC 9817] gi|229420191|gb|EEO35238.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC 9817] Length = 196 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 97/204 (47%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG +E DY+ +DV GV Y + +R + K G+ L++ ++++D +L Sbjct: 1 MFEYLKGKVEYKKPDYLALDVNGVGYKVNISLRVYDKI-KTGESVRLYIFNYIKEDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R F +L V+GVG + + ++S +L + + + + ++P + K Sbjct: 60 IGFLEERERNLFEMLLGVKGVGVSLTLSIMSTFDVEQLRKIVAENDYATLKRVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++ ++ QD ++ + AL LGY Q + + Sbjct: 120 AQQVILDLKGKLKAIGNLFTQD--------ENLFESFAIEDELYEALEALGYSQKEINSL 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V ++ + + I+ L+ Sbjct: 172 VSK--EEIRGFTSIEEAIKCVLKK 193 >gi|296272620|ref|YP_003655251.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM 7299] gi|296096794|gb|ADG92744.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM 7299] Length = 186 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I + IDV G+ Y ++ + S + I + +L +R+D L Sbjct: 1 MIVGINGKIIRKEPTLLHIDVNGLVYEVFVSVNCSSKI--IENNVSLHTTYIIREDSQAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +++ F + + GVG +VA+ + S T + + + + ++ ++PGI K Sbjct: 59 YGFIDVNEKKLFDTVIKINGVGPKVALAICSTFTPSSFSQIVSSNDISMLKRVPGIGPKG 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL G V + S+ + + A AL +LG+ +D + A Sbjct: 119 ASRILVELSG--------------FVIDGNSDEDSVGTNMMEASMALESLGFKKDVISKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S + + S ++R AL+ + Sbjct: 165 LKS-----CSATNTSDLVREALKKL 184 >gi|126656681|ref|ZP_01727895.1| Holliday junction DNA helicase motor protein [Cyanothece sp. CCY0110] gi|126621901|gb|EAZ92609.1| Holliday junction DNA helicase motor protein [Cyanothece sp. CCY0110] Length = 212 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 99/214 (46%), Gaps = 13/214 (6%) Query: 1 MIGKIKG---NIEGLYEDYV--LIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI +KG + + + +++V + Y I P + + + D +F ++ Sbjct: 1 MISYLKGSPIEVIKNTNNRIILVLEVNQIGYEIQIPSKLARDISQEKLDIIQVFTHLQIK 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 DQ L+GF + +R+ F L SV G+GA+ A+ ++ + ELV++I+ N ++++Q P Sbjct: 61 DDQQILYGFFTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI K A RI EL+ K +V ++ + + L+ LGY Sbjct: 121 GIGKKTAERIALELRTKLSQWRKLVGVTVTS-----SSAMPSLEILEDIEMTLLALGYTN 175 Query: 175 DQATTAVVSVLKKEKNI--ADDSQIIRLALRAIS 206 ++ A+ ++ + + + + I+ A+ +S Sbjct: 176 EEINKAISTLSQDNLMLKNTNTEEWIKEAIAWLS 209 >gi|145224407|ref|YP_001135085.1| Holliday junction DNA helicase motor protein [Mycobacterium gilvum PYR-GCK] gi|315444739|ref|YP_004077618.1| Holliday junction DNA helicase, Ruvsubunit alpha [Mycobacterium sp. Spyr1] gi|189045758|sp|A4TBQ6|RUVA_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145216893|gb|ABP46297.1| DNA recombination protein RuvA, domain I [Mycobacterium gilvum PYR-GCK] gi|315263042|gb|ADT99783.1| Holliday junction DNA helicase, RuvA subunit [Mycobacterium sp. Spyr1] Length = 195 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D L Sbjct: 1 MIASVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGSEARLITAMIVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L V G+G +A+G L+ L ++I + + +IP + K Sbjct: 60 YGFADSDARDLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDLTALTRIPKVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A + L+ K S S V H P + ALV LG+ QA A Sbjct: 120 AELLALTLRDKVGS------STSSGVAAAGGHGIRGP-----VVEALVGLGFAVKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + S + R AL + Sbjct: 169 TDKVLANDPEATTSSAL-RAALSML 192 >gi|312870465|ref|ZP_07730585.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3] gi|311094022|gb|EFQ52346.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3] Length = 197 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + Y+++DVQGV Y + +FV +R D I L Sbjct: 1 MYEYLTGTISIVAPQYIVVDVQGVGYKLLV-ANPYRFHEDSAKAVRVFVYQAVRDDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFSDQAEKRLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNIGYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LK K + ++ D V+ + A+ A+ GY + + Sbjct: 120 ASQIVLDLKDKLAAATAGSLFDPQPVSATANPALADALAALKAL------GYKEREVKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L +E+ D + +R ALR ++ Sbjct: 173 IGKQLGEEQQSTD--EYLRQALRLLN 196 >gi|270290977|ref|ZP_06197200.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4] gi|304385248|ref|ZP_07367593.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus acidilactici DSM 20284] gi|270280373|gb|EFA26208.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4] gi|304328455|gb|EFL95676.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus acidilactici DSM 20284] Length = 195 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++IDV GV Y++ S K + ++V + + + L Sbjct: 1 MYEYLNGVVVDINPAYIVIDVNGVGYLVNV-ANPYSF--KPDEKQKVYVHQAVSETENTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D++ F+ L V+G+G + A+ +L+ + ++ + + + P I K Sbjct: 58 YGFKKYVDKELFLNLLKVKGIGPKSALAILANDDHQGFIRAVNNDDVNYLKKFPKIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK S + + AI AL LGY + + Sbjct: 118 AKQIILDLKGKITS--------NEPSGPLFEMPTTTNNTLDEAIEALAALGYSERE-LKK 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L + N D Q I L+ + Sbjct: 169 ITPKLDELSNQTTD-QYISAGLKLL 192 >gi|240173173|ref|ZP_04751831.1| Holliday junction DNA helicase RuvA [Mycobacterium kansasii ATCC 12478] Length = 195 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 13/194 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIAGVRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTEARLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L ++ + + ++PGI + Sbjct: 60 YGFGDRETRDLFLTLLSVSGVGPRLAMATLAVHDAAALRRALADGDVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKVGPAGAAAP------------ALNGNAVRTPVVEALVGLGFAAKQAEEA 167 Query: 181 VVSVLKKEKNIADD 194 VL E Sbjct: 168 TDKVLAAEPGTTTS 181 >gi|116074623|ref|ZP_01471884.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9916] gi|116067845|gb|EAU73598.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9916] Length = 224 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 8/213 (3%) Query: 1 MIGKIKGNIEGLY----EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + ++I GV Y + + L + CT ++ R+D Sbjct: 9 MIGWLQGERIDSWVQGGRQGLVIACGGVGYEVQFTSGHRTRL-EAERQCTAWIHQVQRED 67 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GFL +R F L SV GVG ++A+ +L AT LV++I+ + + + Q G+ Sbjct: 68 GCMLYGFLEKRERDLFRTLISVNGVGPQMALALLESCGATALVDAIVEGDLRQLTQAQGV 127 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQD 175 + A R+ EL+ + S + +S V++ L LGY Sbjct: 128 GKRTAERLAVELRDRLGSWRAPADDGLSLVDRSDLKALPLQGDPLQELQQTLEALGYEDL 187 Query: 176 QATTAVVSVLKKEKNIA--DDSQIIRLALRAIS 206 + A+ +V + A D +R +LR +S Sbjct: 188 EIRRAMRAVATAAEPPAAGDHDAWLRESLRWLS 220 >gi|313682066|ref|YP_004059804.1| holliday junction DNA helicase subunit ruva [Sulfuricurvum kujiense DSM 16994] gi|313154926|gb|ADR33604.1| Holliday junction DNA helicase subunit RuvA [Sulfuricurvum kujiense DSM 16994] Length = 187 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G IE V ++V GV Y ++ + T S +G + L +R+D +L Sbjct: 1 MIIGLDGIIEYKEPSSVHLNVNGVIYEVFISLHTYSSIGS--EKVKLHTHHVIREDAQQL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F + + G+G + A+ + S T + I ++ + ++PGI K Sbjct: 59 YGFEQKSEKILFEGMLKINGIGPKAALAICSTFTPEQFAGIISSKDINALKKVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM EL G L + + A AL LG+ ++Q A Sbjct: 119 AGRIMVELAGFDAVLLG--------------SGITATTATTEASMALEALGFKKEQIGKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + D + +++ AL+ + Sbjct: 165 LSA-----SGATDTAALVKDALKQL 184 >gi|167644751|ref|YP_001682414.1| Holliday junction DNA helicase RuvA [Caulobacter sp. K31] gi|189045745|sp|B0SUN8|RUVA_CAUSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167347181|gb|ABZ69916.1| DNA recombination protein RuvA domain I [Caulobacter sp. K31] Length = 204 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E+ LIDV GV Y++ C RTL L +G+ L +E+ + +R Sbjct: 1 MIGRLRGAVAEIGEEEALIDVMGVGYVVRCGSRTLQRLPALGEEALLHIESQWSESAGLR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + DR+ F+LLQ++QGVG + AM VL ++ EL ++ ++ + + G+ K Sbjct: 61 LYGFGTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRASGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK K I+ V+ V A +A++AL+ LG + A Sbjct: 121 LALRIVTELKDKPITDGPVLMTAPGAVAAAPAKAAPTG----DAVAALMGLGVAEVNARR 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K + A +I+ L+ + Sbjct: 177 VVEAAAAKLGDEATVQALIKAGLQEL 202 >gi|88602182|ref|YP_502360.1| Holliday junction DNA helicase RuvA [Methanospirillum hungatei JF-1] gi|88187644|gb|ABD40641.1| Holliday junction DNA helicase subunit RuvA [Methanospirillum hungatei JF-1] Length = 195 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + G V+++ G+ Y I P L+ + K D L+ E +RQD ++L Sbjct: 1 MIARIRGLVIGYETGSVIVEAGGIGYRIRVPESVLTSITK-DDEIILYTELIIRQDLMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL SV +G + + ++SR++ E+ ++I + ++++Q+ G+ K Sbjct: 60 YGFYTPEETEMFRLLISVSHIGPQTGLAIISRLSLPEICDAISSKKPEILSQVQGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K L Q + K Q +A+ AL++LGY +++A A Sbjct: 120 AERIILELQKKVSELKIQYPQTPTSSTKIQ-----------DAVLALLSLGYSREEAMGA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + + S+++R AL Sbjct: 169 LER-SALDTETVSSSELVREAL 189 >gi|219871499|ref|YP_002475874.1| holliday junction DNA helicase motor protein [Haemophilus parasuis SH0165] gi|219691703|gb|ACL32926.1| holliday junction DNA helicase motor protein [Haemophilus parasuis SH0165] Length = 171 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 4/172 (2%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + + L + + +F +R+D LFGF+ +R F L GVG ++A+ +LS Sbjct: 1 MTSFYNLPDLNEDTMIFTHLVIREDAHLLFGFVQKQERMLFRELIKTNGVGPKLALAILS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ +E + +I + + +IPGI K A R++ ELKGK +L + + Sbjct: 61 AMSVSEFMSAIEQEELAKLIKIPGIGRKTAERLLVELKGKFSTLFHHEISILQPSGNLLS 120 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 P AI AL++LGY A V V +K + + Q+IR AL+ Sbjct: 121 MASMSP--VNEAIDALISLGYKAADAEKMVKKVNRK--SESTSEQLIREALK 168 >gi|262197092|ref|YP_003268301.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM 14365] gi|262080439|gb|ACY16408.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM 14365] Length = 210 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 7/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + V+++ GV Y + I TL L G+ TL + TH + ++ L Sbjct: 1 MIGRLRGTLVEQEGSMVIVECGGVGYEVTVSIHTLQSLPAEGEPVTLRIFTHALESRVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R F LL +V+ VG A+G+LS + E+ E I + + ++ G+ K Sbjct: 61 YGFGSTLERDLFDLLITVKKVGPSSAVGILSAGSGPAEIAEMIANGETSSLTRLRGVGKK 120 Query: 120 IASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A ++ EL+ K L + + + A S AL+ LG+ Q Sbjct: 121 TAEMLVVELREKCELLLATHRVQGGRAAARAPAAAARPSSRGPLLDEVAQALLQLGWRQQ 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ ++R ALRA+ Sbjct: 181 SVDQVVSELAPTAED--SLESLLRQALRAM 208 >gi|221194792|ref|ZP_03567849.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626] gi|221185696|gb|EEE18086.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626] Length = 211 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 6/211 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + + V++DV GV Y + T + L + G+ T+ +R+D + Sbjct: 1 MIVQLTGTLLSVSPSLVVLDVNGVGYELGVSANTAASLPQAGEAGVTVLTRMVVREDAME 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L+++ G+GA++A+ VLS T +L + ++ + Q+ G+ K Sbjct: 61 LYGFSSREERALFDRLRAISGIGAKLALSVLSTFTPQQLASVVASEDVTRMTQVAGLGKK 120 Query: 120 IASRIMTELKG---KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ EL K L ++V + + S AL+ +G+ + Sbjct: 121 KAGRMLVELSDVFAKDAELRNLVGLSGLSDTNVSGGLSAHTSLDDEVTEALLAMGFTSQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 A A+ ++E + + ALR + Sbjct: 181 AALALEG--RQEAGALSIEKAMSYALRRLGS 209 >gi|209524253|ref|ZP_03272803.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328] gi|209495344|gb|EDZ95649.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328] Length = 206 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG + G + G+Y+ ++ +DV GV Y + R + KIG+ +F H+R Sbjct: 1 MIGYLNGTVAGIYKKTGNRVFLWLDVNGVGYELQILPRMQNLDAKIGENLQVFTHLHIRD 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D + L+GF S +R F L SV G+G ++A+ +L + +LV++I+ N+ ++ + PG Sbjct: 61 DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLALPDLVQAIVGGNTGILTKTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K + A I +L+ LGY Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAEI------QEEVEISLLALGYTTS 174 Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLA 201 + A+ ++ I+ A Sbjct: 175 EVMQALKAITSHPNLSENNSAEDWIKYA 202 >gi|315108548|gb|EFT80524.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL030PA2] Length = 194 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 10/200 (5%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + +V++D GV + CP T + +I +L +R++ + L+GF+ D Sbjct: 2 VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L+Q+ GVG ++A ++S + A +L +I ++ + +PGI K A++++ EL Sbjct: 61 RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCSVPGIGRKGAAKMILEL 120 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186 K K +L+ + + + LV LG+ A AV V LK Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173 Query: 187 KEKNIADDSQIIRLALRAIS 206 + ++R ALR+++ Sbjct: 174 EADPAMTIGNLMRAALRSLA 193 >gi|34556867|ref|NP_906682.1| Holliday junction DNA helicase RuvA [Wolinella succinogenes DSM 1740] gi|44888365|sp|Q7MA70|RUVA_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34482582|emb|CAE09582.1| PUTATIVE HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes] Length = 189 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KGNIE + ++V GV Y I+ I T + LG+ L + +R++ L Sbjct: 1 MIVALKGNIEKKEPTRLWLEVGGVTYEIFISIHTSAALGE--KEARLLITHLIREEAWSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F L + GVG + A+ +LS T + I Q+ K + ++PGI K Sbjct: 59 YGFAEEAEKRVFDTLIKINGVGPKAALAILSTYTPPTFAQIIQAQDVKALQRVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM EL G ++SL ++ S P + AL +LG+ + A Sbjct: 119 AGRIMVELAGFSLSL-------------QEGSKASTPPVFEESRLALESLGFKSELIAKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ +II+ AL+ + Sbjct: 166 LQNIQA-----TTTQEIIKEALKKL 185 >gi|260654961|ref|ZP_05860449.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1] gi|260630276|gb|EEX48470.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1] Length = 200 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + L +++ G+ + + + L ++G+ L + + L Sbjct: 1 MLASLRGTVILLEGSSAVVECGGLGFQVQLTRKAFG-LCRVGESVFLQTYLQVSDAGMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +RQ F LL +V+GVG ++AM VL ++A E + ++ +SK + +PGI K Sbjct: 60 FGFADAAERQAFELLTTVKGVGGKLAMTVLQSLSAQETIAAVAAGDSKTLTAVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL K S D++ + I AL +LG+ + A Sbjct: 120 AERICFELSEKITGSSEWSSADLTA----------KLQHSDEVIEALESLGFDHASSVRA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ A + I LR + Sbjct: 170 YQQLCQERGEPASTEEAIFNCLRLL 194 >gi|284051632|ref|ZP_06381842.1| Holliday junction DNA helicase RuvA [Arthrospira platensis str. Paraca] gi|291571635|dbj|BAI93907.1| Holliday junction DNA helicase RuvA [Arthrospira platensis NIES-39] Length = 206 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIE---GLYEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG + G + + V++ DV GV Y + R + K G+ +F +R Sbjct: 1 MIGYLNGTVAGIYKKTGNRVILYLDVNGVGYELQILPRMQNLDAKTGENLQVFTHLQVRD 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D + L+GF S +R F L SV G+G ++A+ +L + +LV++I+ N+ ++ + PG Sbjct: 61 DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLELPDLVQAIVGGNTGILTKTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K + A I +L+ LGY Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAEI------QEEVEMSLLALGYTSS 174 Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLA 201 + A+ ++ I+ A Sbjct: 175 EVMQALTAITSHPNLAENNSAEDWIKYA 202 >gi|254383613|ref|ZP_04998963.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp. Mg1] gi|194342508|gb|EDX23474.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp. Mg1] Length = 210 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 11/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV + C T++ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTLAVIEVGGVGMAVQCTPNTIAAL-RVGEPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L + L ++ + + + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRLAVESGDERALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ + V ++A + +AL+ LGY A A Sbjct: 120 AQKLLL----ELKGKLGAPLGSSGLVGAQRAAAAGPAPWTEQLSAALIGLGYASRDAEEA 175 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + A Q++R AL++++ Sbjct: 176 VSAVTPQAEAAIAAGGSAPVPQLLRAALQSLN 207 >gi|116493020|ref|YP_804755.1| Holliday junction DNA helicase subunit RuvA [Pediococcus pentosaceus ATCC 25745] gi|122265516|sp|Q03EQ9|RUVA_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116103170|gb|ABJ68313.1| Holliday junction DNA helicase subunit RuvA [Pediococcus pentosaceus ATCC 25745] Length = 195 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y+++DV GV +++ L +FV + ++ L Sbjct: 1 MYEYLDGVVVNVNPAYIVVDVNGVGFLVNVANPYSFELDAKQ---KVFVHQAVSENDQTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F+ L V+G+G + A+ +L+ T L+ +I + + + P I K Sbjct: 58 YGFKKAEDKELFLNLLKVKGIGPKSALAILANDDHTGLINAINNDDVSYLKKFPKIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + V QA A+ AL+ LGY + + Sbjct: 118 AQQIILDLKGKVAVENEVGTLFDLSTTSNQA--------LDEALEALIALGYSEKEVKKL 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ D Q I L+ + Sbjct: 170 TKKLSEQTDRTTD--QYISSGLKLL 192 >gi|302533404|ref|ZP_07285746.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C] gi|302442299|gb|EFL14115.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C] Length = 209 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV + C T++ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGQVAALAPTLAVIEVGGVGMAVQCTPNTIAGL-RVGEPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG RVA +L T L + ++K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRVAQAMLGVHTPDALRVAFAAGDAKALTAVPGIGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A + ++ + + +AL+ LGY A A Sbjct: 120 AQ-----KLLLELKGKLGAPGGVAVGAQRAPAAAGPAPWTEQLTAALIGLGYASRDAEEA 174 Query: 181 VVSVLKKE------KNIADDSQIIRLALRAIS 206 V +V + A Q++R AL++++ Sbjct: 175 VSAVTPQAEAAIASGGSAPVPQLLRAALQSLN 206 >gi|206889338|ref|YP_002248715.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio yellowstonii DSM 11347] gi|226698744|sp|B5YKF0|RUVA_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|206741276|gb|ACI20333.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 190 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 21/206 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG + + D ++I G+ Y + PIR + + + +F ++++ I + Sbjct: 1 MLDFIKGKVITVKPDKIVIQTGGIGYSVKIPIRVSRYINR-DEETQIFTSLIVKEESIEI 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +R F L + G+G ++A+ +LS L + I ++ K +++IPGI K Sbjct: 60 YGFLESSERDLFEELIKIAGIGPKMAINILSTYDRETLYKIIDHEDIKSLSKIPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+G SL Q + +SAL+NLGY + +A Sbjct: 120 AQRILLELRGILPSLQYEKDQ-----------------KYDDILSALLNLGYKRLEAKEV 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + EK D++ IIR +L ++ Sbjct: 163 LDKIYNNEK---DEATIIRESLSILA 185 >gi|303328183|ref|ZP_07358621.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3] gi|302861513|gb|EFL84449.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3] Length = 203 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + LI GV Y + P TL+ L G+ L+ +R+D + Sbjct: 1 MIAYLEGRLAETWGNACLIVTEGGVGYEVALPAHTLAALPDRGEQLALYTSLAVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S +RQ F +L S+ VGAR A+ +LS +L ++ + + ++ GI K Sbjct: 61 LFGFASFEERQTFEVLVSISKVGARTALAILSIFRPDDLRRLVLEDDVLALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A + ELK K ++ + S + + L NLGY +++ Sbjct: 121 TAQHVFLELKYKLKVEDVPQAAVLAASGRP-------GSVFRDVLDGLANLGYAEEECAP 173 Query: 180 AVVSVLKKEKNI 191 V +L +E ++ Sbjct: 174 LVKKILHEEPDL 185 >gi|271967390|ref|YP_003341586.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium roseum DSM 43021] gi|270510565|gb|ACZ88843.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium roseum DSM 43021] Length = 206 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 14/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D +++V GV +++C TL+ L ++G+ L +R++ + L Sbjct: 1 MIASVRGRVAAIAPDGAVVEVGGVGMLVHCTPGTLATL-RVGEEARLATSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R F +LQ+ GVG +VA+ +L+ T L ++ + K + ++PG+ K Sbjct: 60 FGFGSDDERGVFEMLQTANGVGPKVALAMLAVHTPNALRMAVASADVKALTRVPGVGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + VN + P++ S LV LGY A A Sbjct: 120 AQRIIVDLKDKLGTPDQ-------AVNAALNGGAAAPAWRDQVHSGLVGLGYSARDADEA 172 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + E + +++ ALRA+S Sbjct: 173 VAAVTPQADIEVAEGRSPQVATLLKAALRALS 204 >gi|186683711|ref|YP_001866907.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102] gi|186466163|gb|ACC81964.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102] Length = 228 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIEGL---YEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + V++ +V G+ Y + P R + L + G +F +R+ Sbjct: 19 MISYLKGIVAGIQTIGANRVILTLEVNGLGYDLQVPQRLANQLPESGGVAQIFTHFQIRE 78 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L +V G+GA +A+ +L + +LV++II N++++ Q PG Sbjct: 79 EVPYLYGFASPAERDLFRHLLTVTGIGAALAIALLDTLELPDLVQAIIAGNTQILIQAPG 138 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + KIA RI ELK K + ++ P L LGY Sbjct: 139 VGKKIAERICLELKSKLVEWRKSAGFFVATGGP-------APGILEEVQMTLFALGYTAH 191 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207 + + A+ V + A I+ A+ +S Sbjct: 192 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLSS 225 >gi|254478024|ref|ZP_05091408.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum DSM 12653] gi|214036028|gb|EEB76718.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum DSM 12653] Length = 187 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + D+V+ID G+ I+ P T+ L G+ L+ ++R+D ++ Sbjct: 1 MIEYIRGIIEDIGPDHVIIDFMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS + ++++ + K++ PGI K Sbjct: 61 FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V ++D +A + GY + +A A Sbjct: 121 AERIILELKDKVPKEVVVPKEDSLLNEALEALLAL---------------GYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V N Q ++ AL+ ++ Sbjct: 166 LSDV-----NCESVEQAVKEALKKLA 186 >gi|20807635|ref|NP_622806.1| Holliday junction resolvasome DNA-binding subunit [Thermoanaerobacter tengcongensis MB4] gi|22001976|sp|Q8RAN3|RUVA_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|20516178|gb|AAM24410.1| Holliday junction resolvasome DNA-binding subunit [Thermoanaerobacter tengcongensis MB4] Length = 187 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + D+V+ID+ G+ I+ P T+ L G+ L+ ++R+D ++ Sbjct: 1 MIEYIRGIIEDIGPDHVIIDLMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS + ++++ + K++ PGI K Sbjct: 61 FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V ++D +A + GY + +A A Sbjct: 121 AERIILELKDKVPKEVVVPKEDSLLNEALEALLAL---------------GYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V N Q ++ AL+ ++ Sbjct: 166 LSDV-----NCESVEQAVKEALKKLA 186 >gi|28493235|ref|NP_787396.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str. Twist] gi|28476276|gb|AAO44365.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str. Twist] Length = 222 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 108/205 (52%), Gaps = 15/205 (7%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G +E + V++++ G+ +++ P ++ L+ +R+D + L+ Sbjct: 30 IASLSGLLEAVRPGSVVVNMHGIGFLVRVPQSFN---PEVDAEVKLYTSLQVREDSVSLY 86 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF S L+ F L ++ GVG RVA+ +LS +T E+ +++ + K + ++ G+ K+A Sbjct: 87 GFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLA 146 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 I+ +L GK S+ ++ V++ + + AL+ LG+ + ++ AV Sbjct: 147 GTIVLQLAGKLTSVPLENRKQEQAVDR-----------SAEIVQALIGLGWQRQESAAAV 195 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 SVL+K++++ +I+R ALR ++ Sbjct: 196 ESVLEKDQSLT-MPEILRNALRYLA 219 >gi|295107077|emb|CBL04620.1| Holliday junction DNA helicase subunit RuvA [Gordonibacter pamelaeae 7-10-1-b] Length = 199 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G IDV GV Y + +LS L + G + +R D I L Sbjct: 1 MIAFLKGRLAGKTAAAAFIDVNGVGYAVGMSQASLSKLPEAGASVEVHTYLQVRDDAIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ ++ F L V GVG +VA+ LS T LV +I Q+ +++IPG+ K Sbjct: 61 YGFMTVEEKALFERLIGVGGVGPKVALAALSVFTPQALVAAIAAQDVAAVSKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG S+ Q S ++ +A A AL+++G+ +A A Sbjct: 121 ASRIILELKG------SLDQGLASLFDEGEAPAARAAEQLRGAHEALLSMGFTAAEADLA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 LK DS +++ AL+ + Sbjct: 175 ----LKGAPEGVSDSAVLQYALKRLGT 197 >gi|293375246|ref|ZP_06621530.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909] gi|325840674|ref|ZP_08167125.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1] gi|292646144|gb|EFF64170.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909] gi|325490238|gb|EGC92572.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1] Length = 195 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 21/204 (10%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 +KG + +D+V+I+V G+ Y +Y + + +F + ++ + L+ Sbjct: 11 YAYLKGTVAYSAKDFVVIEVAGIGYKVY-TANPYEF--RKDEATQVFTHQVVSENDLSLY 67 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + + F+ L S +G+G + A +L+ + L +I ++K + + P I K A Sbjct: 68 GFKTLEEHDLFINLISARGIGPKTACAILAMKDMSGLRHAIENGDAKYLCKFPKIGPKTA 127 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +I+ +LKGK + + + + + A+ AL LGYG + T V Sbjct: 128 QQIILDLKGKLVVPDAAIF---------------VNNSLSEALEALQALGYGDKELTK-V 171 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + K A +II+ L+ + Sbjct: 172 KNAFKD--TDASVDEIIKKGLQLL 193 >gi|94984833|ref|YP_604197.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM 11300] gi|122986676|sp|Q1J0F6|RUVA_DEIGD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94555114|gb|ABF45028.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM 11300] Length = 198 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + E +I GV Y ++CP TL L G L + +R+D L Sbjct: 1 MIAYLSGAVREVREASAVIVAGGVGYEVFCPASTLGRLV-PGQPAELNIRHVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + F LL V GVG ++A+ +LS + T + + ++ + K+++ + G+ K Sbjct: 60 FGFLDTDSLRLFDLLIGVSGVGPKLALSLLSALPVTAVAQGLLSGDVKLLSSVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + +AI AL+ LG+ + Q + Sbjct: 120 AERLVLELQNKVP------EHLAAGAPVSAGKAALTSTAGRDAIEALLALGFREPQVRSV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L + + D+ +IR L + Sbjct: 174 VAELLAADPEQSADA-LIRKGLGKL 197 >gi|78777407|ref|YP_393722.1| Holliday junction DNA helicase motor protein [Sulfurimonas denitrificans DSM 1251] gi|123727548|sp|Q30R94|RUVA_SULDN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78497947|gb|ABB44487.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas denitrificans DSM 1251] Length = 188 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +V +DV GV Y ++ +++ S L G+ LF +R+D L Sbjct: 1 MIVGVRGVLVSKEPSFVHVDVGGVVYEVFISLQSFSALS--GNEVKLFTSHVIREDAQLL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +++ F L + GVG +VAM + S T ++ + ++ + ++PGI K Sbjct: 59 YGFLELGEKKLFERLIKINGVGPKVAMAICSTYTPSQFAVVLNNKDITAVQRVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL G L + S A AL +LG+ +D+ + A Sbjct: 119 AGRILVELSGFDTELIISASEPKSLA-------------VAQASEALESLGFKKDKISKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S + D + +++ AL+ + Sbjct: 166 LGS-----CSAVDTAILVKEALKLL 185 >gi|317124983|ref|YP_004099095.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum DSM 43043] gi|315589071|gb|ADU48368.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum DSM 43043] Length = 201 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D V++ V GV +++ T + L +IG L +R+D + L Sbjct: 1 MIASLSGTVLKAGLDSVVVAVGGVGMLVHTTPATAAAL-RIGQPADLATTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F +Q+V GVG R+A+ VL+ T + ++ + + ++PGI K Sbjct: 60 YGFATEEEKHVFETVQTVSGVGPRLALAVLAVHDPTSVRRALGSGDIAALTKVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +L+ + + ALV LG+ QA A Sbjct: 120 AERLVLELRDKLGALAGSSDGASIGHQRMDGE-----PWREQVREALVGLGWTVRQADDA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + + A S ++R ALR + Sbjct: 175 LDRVAPQAADGASVSAMLRAALREL 199 >gi|152990842|ref|YP_001356564.1| Holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2] gi|166230575|sp|A6Q3Z8|RUVA_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151422703|dbj|BAF70207.1| holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2] Length = 184 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + Y+ I+V GV Y ++ + + + K L +R+D L Sbjct: 1 MIVGLVGEVLKKEPTYLHIEVGGVVYEVFISLNASAAIDK--KQIRLHTTHIIREDSESL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +++ F L + GVG +VA+ + S E V+ + +N ++ ++PGI K Sbjct: 59 YGFVDINEKKMFDRLIKLNGVGPKVAIAICSTFKPQEFVQIVQQKNVAMLKKVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + + S A AL +LG+ ++Q A Sbjct: 119 AQRILVEL-----------------GEFDISESNVTSSAFQEASMALQSLGFKKEQIQKA 161 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +E D + +++ AL+ I Sbjct: 162 L-----QECTATDTASLVKEALKKI 181 >gi|256831252|ref|YP_003159980.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM 4028] gi|256580428|gb|ACU91564.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM 4028] Length = 198 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + E+ VL+ GV Y ++ L+ L GD LFV T +R+D + Sbjct: 1 MIAYLEGTVLRRDEESCVLLTAGGVGYQLHLTSDGLAALPGAGDTARLFVHTLVREDALT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LF F S +RQ F+ L +G + A+ +L + EL I ++ ++++PGI K Sbjct: 61 LFAFSSWEERQAFVTLLGAPKLGPKTALAMLGCYSPAELAACIAKEDVAALSRVPGIGAK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R L + + +S + P+ + + +ALV+LGYG+ + Sbjct: 121 TAKR----------LLLDLKDKLVSSPSLLPGRTAPAPTASADCAAALVSLGYGRHEVDE 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 V V +KE ++ D IR AL+ + Sbjct: 171 VVRVVFEKEPDL-DAGSAIRQALKIFAS 197 >gi|58617428|ref|YP_196627.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Gardel] gi|75356743|sp|Q5FG40|RUVA_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58417040|emb|CAI28153.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Gardel] Length = 191 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 119/207 (57%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR- 59 MIG I GN+E + + Y++++V + YIIY + L K+GD L++ET++ +D I Sbjct: 1 MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQT-CKVGDNIKLYIETYVNRDNITQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ ++ +F +L ++ G+ + A+ +LS+++ ++ +++ + K+ + GI K Sbjct: 60 LYGFLNRQEQDYFKMLVTINGINYKTALSILSKLSPEQIFSAVVNND-KIAFKGNGIGEK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TEL+ K + +++ S + + ++++AL++LGY + +A Sbjct: 119 LAGRIITELQYKINKMP--IEETFSIIEND------------DSLAALISLGYEKLKAFN 164 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + K + A ++IR AL+ +S Sbjct: 165 VIQEIKSKTPD-ASTQEVIRKALQKLS 190 >gi|304320107|ref|YP_003853750.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis HTCC2503] gi|303299010|gb|ADM08609.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis HTCC2503] Length = 202 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L + +IDV GV Y + R LS L + G L ET + + IRL Sbjct: 1 MIAALHGTVSVLSGENAIIDVNGVGYEVAATPRLLSSLAQ-GQEVRLITETLVAETYIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F + +R F LLQ+VQGVGA+ A+ +LS +T +L +++ + ++A+ G+ K+ Sbjct: 60 VAFQTIEERLTFRLLQTVQGVGAKAALAILSALTPADLFDAVEAGDKAMVARAQGVGPKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELKGK +V + + ++ S A +A++ALV LG+ A Sbjct: 120 ALRIVTELKGKC---GGIVGAFPAVASPRATSAAAVDSPAEDAVAALVALGFDHGAARRT 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + ++ + + +I L+ ++ Sbjct: 177 ISTL--PDLETSRTEDLITAGLKTLAA 201 >gi|33862917|ref|NP_894477.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9313] gi|44888415|sp|Q7V7T9|RUVA_PROMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33634833|emb|CAE20819.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9313] Length = 225 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 15/221 (6%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G ++ V++ GV Y + R LS + + L++ R D Sbjct: 1 MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F L V GVG ++A+ +L ELVE+I+ + + + Q G+ Sbjct: 61 GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ K S N S L LGY + Sbjct: 121 GKRTAERLAVELRTKLAEFSCRDPGMSLVDNGVIDSHQLKDSSLHELQITLGGLGYEDLE 180 Query: 177 ATTAVVSVLKKE-----------KNIADDSQIIRLALRAIS 206 A+ +V +I D +R +LR +S Sbjct: 181 IRRAIRAVASGAAIGASDMPESVPSIDDTDAWLRASLRWLS 221 >gi|307299266|ref|ZP_07579067.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium mesG1.Ag.4.2] gi|306915062|gb|EFN45448.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium mesG1.Ag.4.2] Length = 197 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + + E ++I V G+ + + C T+S L D L + + L Sbjct: 1 MLEGIEGRVREIRETEIVIQVGGLFFKVNCTPNTISKLPVEKDVYLLTFMAYSQDRPPEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F +L +G + AM +LS + + + I +N+ ++ +PGI K Sbjct: 61 YGFYDQEEKELFNILLRASKIGPKSAMKILSSASPSRIKHIISTKNAAELSSLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL D S + E+ S A++AL +LG+ ++Q+ Sbjct: 121 AERMIVEL---------ASLVDTSGITDEETIPGVERSHGEEAVAALTSLGFDENQSRKV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +LK E+ I D +I+ AL+ I Sbjct: 172 VIEILKAEREI-DTHDLIKKALKEI 195 >gi|298346872|ref|YP_003719559.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii ATCC 43063] gi|304389423|ref|ZP_07371386.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236933|gb|ADI68065.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii ATCC 43063] gi|304327233|gb|EFL94468.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 194 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + D + V G+ TL+ L G T+ +R+D + L Sbjct: 1 MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLATLV-PGTTATVQTYLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V+G+G ++ + LS ++ L ++ + + IPG+ K Sbjct: 60 YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K +S V + + + AL NLGY Q AT A Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQALATEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V +V + +D +R AL+ + Sbjct: 170 VNAV-----SASDAPTALREALKYLGS 191 >gi|315655417|ref|ZP_07908317.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii ATCC 51333] gi|315490357|gb|EFU79982.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii ATCC 51333] Length = 194 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + D + V G+ TL+ L G T+ +R+D + L Sbjct: 1 MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALV-PGTTATVQTYLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V+G+G ++ + LS ++ L ++ + + IPG+ K Sbjct: 60 YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K +S V + + + AL NLGY Q AT A Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQAIATEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V +V + +D +R AL+ + Sbjct: 170 VNAV-----SASDAPTALREALKYLGS 191 >gi|253581541|ref|ZP_04858766.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC 27725] gi|251836611|gb|EES65146.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC 27725] Length = 198 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 97/206 (47%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G +E DY+ +DV GV Y + +RT + G+ L++ ++++D +L Sbjct: 1 MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFINA-GEEVKLYIYNYIKEDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R F +L V+G+G +A+ V+S + + + + + ++P + K Sbjct: 60 IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYNNLKRVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + +++ +LK K +L D ++ ISAL LGY + + T Sbjct: 120 SQQLILDLKSKLKTL------DALSIDTRNDDAARHLMIEEELISALEGLGYSKKEINTL 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ K+ + I+ L+ ++ Sbjct: 174 ITR--EELKSFKTIEEAIKGVLKKVN 197 >gi|67922170|ref|ZP_00515685.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501] gi|67856070|gb|EAM51314.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501] Length = 210 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 98/214 (45%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI +KG + ++ ++++V + Y + P + + + + +F ++ Sbjct: 1 MISYLKGIPIEVIKNTNNRIILVLEVNKIGYELQIPSKLARDISQYDLENIQVFTYLQIK 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF + +R+ F L SV G+GA+ A+ ++ + ELV++I+ N + ++Q P Sbjct: 61 EDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRTLSQTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A RI EL+ K +V ++ + + L+ LGY Sbjct: 121 GVGKKTAERIALELRTKLSQWRKLVGGTVAS-----SSAMPSLDILEDIEMTLLALGYTN 175 Query: 175 DQATTAVVSVLKKEKNI--ADDSQIIRLALRAIS 206 ++ AV ++ + + + I+ + +S Sbjct: 176 EEINKAVSTLSQDNLMLKNTSTEEWIKEVIAWLS 209 >gi|323698439|ref|ZP_08110351.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. ND132] gi|323458371|gb|EGB14236.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans ND132] Length = 206 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G + E +++ GV Y + P L+ L G LFV T + + I Sbjct: 1 MIGYLLGELLSADEKGLVLLTPGGVGYEVAAPTSVLAKLPGRGQEVRLFVHTQVGEKAID 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL+ D F L S+ +G + AM +LS A L E ++ ++ +PGI K Sbjct: 61 LFGFLTADDLDLFRTLISLDKLGPKKAMAILSMFDAAHLREIAFREDVNTLSTVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LK K L V + + Q ++A++ L LGYG+D+ Sbjct: 121 SAKQILWNLKDKVDKLKPVTGRGSAADQGRQGPQGEY----LDALAGLKGLGYGEDEIRP 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 ++ +E ++ D + IR L+ I+ Sbjct: 177 MLIETFDEEPDL-DAAGAIRAVLKKINA 203 >gi|224541319|ref|ZP_03681858.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM 15897] gi|224525756|gb|EEF94861.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM 15897] Length = 204 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I GLY D+++ID G+ Y ++ K GD T+++ +++D + L Sbjct: 19 MYSYIKGIIAGLYSDHIVIDNHGIGYEVHVSNPYNF---KKGDDATVYIYQQVKEDDLTL 75 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L V+G+G + A+G+L+ ++++I +N + +IPGI K Sbjct: 76 FGFKKKEEKELFQKLILVKGIGCKTAIGILATGEIDAIIDAIEGKNIAYLKKIPGIGPKA 135 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L GK +A A L+ LGY Q A Sbjct: 136 AQQIILDLHGKFDK---------------RAMKPLGSPDYEEATEVLIALGYKQSDVEKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VL E D + ++ AL + Sbjct: 181 M-KVLSSEN--LDTNGYVKRALALL 202 >gi|169836412|ref|ZP_02869600.1| Holliday junction DNA helicase, subunit A [candidate division TM7 single-cell isolate TM7a] Length = 192 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 12/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + ++IDV G+ Y ++ + L +G+ + H+R+ L Sbjct: 1 MIAHVRGKISEKFNGSIIIDVNGLGYELFVSVVDFD-LVNLGESVKFYTYHHVREQSEEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F +L SVQGVG + A+ +LS + +I N+ I + G+ K Sbjct: 60 FGFSTLSAKKIFEMLISVQGVGPKAALAILSLGNVETVRNAIANSNAGFIQKASGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L K V N + + + + A+ AL+ LGY A+ A Sbjct: 120 ADRVVVDLHDK-------VGLPTKYENSNEIIENNQLNSSDEAVEALMALGYTLADASEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + ++ ++ + AL+ Sbjct: 173 LKNI----DTDLSTAERVTKALQQ 192 >gi|262037466|ref|ZP_06010926.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii F0264] gi|261748501|gb|EEY35880.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii F0264] Length = 213 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 8/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + DYV +D+ G+ Y I+ ++T LG+ G L+V TH+++D I Sbjct: 1 MFEYIFGELTVKKIDYVALDINGLAYKIFISLKTFEALGETGQDEKLYVHTHVKEDDISF 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R+ F L S GVG ++ + +LS +++ +I NSK+ ++PG+ K Sbjct: 61 YGFKTENERELFKALISTSGVGPKLGLAILSTYNVKDVINIVIESNSKLFTKVPGLGDKK 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174 A +I+ +LK K L+ + + + + I S S + AL +LGY Sbjct: 121 AQKIILDLKDKVKKLNIIETYNENGEISKGNPIVSDTSNTKILLMKEDIKLALESLGYLN 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ I D + I+ L+ I Sbjct: 181 ADVSKWIKD--EELSQINDIGEAIKSILQKI 209 >gi|297566125|ref|YP_003685097.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946] gi|296850574|gb|ADH63589.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946] Length = 193 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ +KG E+ V++ V G ++CP TL+ L + G+ L + +R+D + L Sbjct: 1 MVRYLKGTALRKTENSVILLVGGFGLEVFCPTTTLTHLPEEGE-IALHTKLVVREDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F +L V GVG +V + +LS ++ L ++ + +++ G+ K+ Sbjct: 60 YGFADQRSLELFEMLLGVSGVGPKVGLNLLSSLSPALLARALADGDIRLLTGAQGVGRKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+GK + E I P A ALV LG+ ++Q +A Sbjct: 120 AERIALELRGKVP----------PHLMGEAGPILRRPQ-TEEAELALVTLGFRENQVRSA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++++ A +IIRLAL+A+ Sbjct: 169 VAQIVQQNPE-ASTQEIIRLALKAL 192 >gi|317154312|ref|YP_004122360.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis Aspo-2] gi|316944563|gb|ADU63614.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis Aspo-2] Length = 203 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + ++ +++ GV Y + P L+ L G +LFV T + + I Sbjct: 1 MIGYLQGTLLAAHDKGLVLLTPGGVGYEVAAPTSVLARLPGRGGEVSLFVHTQVGEKAID 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL D F L S+ +G + A+ +LS A L E +++ ++ +PGI K Sbjct: 61 LFGFLESDDLDLFRTLISIDKLGPKKALAILSMFDAEHLREVAYREDATTLSTVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LK K LS + + V + ++ ++ L LGY +D+ Sbjct: 121 SAKQILWHLKDKVNKLSPAPSRGSAKVEGPRGE-------YLDTLAGLKGLGYSEDEVRP 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 ++ + E ++ D + IR LR I+ Sbjct: 174 MILEIFDAEPDL-DAAGAIRATLRKIAA 200 >gi|170017578|ref|YP_001728497.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20] gi|229560098|sp|B1MZV1|RUVA_LEUCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169804435|gb|ACA83053.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20] Length = 196 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 17/208 (8%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I +Y Y++I D GV Y ++ P R + ++VE +R+++ Sbjct: 1 MYEYINGLITNIYPAYLVIADRSGVGYKLFVANPYRF-----EQNVESHVYVEQIVRENE 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + L+GF+ + ++ F L +V G+G + A+ +L+ A LV ++ ++ + Q PG+ Sbjct: 56 MTLYGFIDENEKYLFNKLLNVSGIGPKSALAILASDDAAGLVTAVANDDASYLTQFPGVG 115 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +I+ +LKGK L+ + V + A+ +LGY Sbjct: 116 KKTAQQIVLDLKGKLDDLALSAGMTVETVPTTDNQALADALAALE------SLGYSAKDV 169 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + +VL +K+ D IR AL+ + Sbjct: 170 AK-LQTVLANQKDTTDG--YIRSALKFL 194 >gi|289449412|ref|YP_003475227.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183959|gb|ADC90384.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 206 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK--IGDFCTLFVETHMRQDQI 58 M I G + + V+I+ G+ Y + P L GD +F ++R+D Sbjct: 1 MYAYINGEYKYVDAGSVVIECNGIGYTLLMP-----KLPAWTAGDKVKVFTYLYVREDIF 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S F +L V +G ++A+ +L IT + +I+ + K++ I G+ Sbjct: 56 ELYGFASQEQLNLFKMLIGVNKIGPKLALQILGSITPEQFALAILRNDLKILTSIKGLGK 115 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ +L+ K S + + + + Q + + AL LGY Sbjct: 116 KNAERLVIDLRDKLKKAGSPSAKASTGLTSLETQEDTIDVADDFSAVVEALTLLGYDYKT 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 + +V E D +Q IRLALR Sbjct: 176 SVKQAKAVFDPE---LDLNQNIRLALR 199 >gi|218281325|ref|ZP_03487813.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989] gi|218217510|gb|EEC91048.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989] Length = 192 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 21/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + D V++DV GV Y +Y LS K+ + L+ H+R+D I L Sbjct: 1 MIAFVNGIVKIIRNDRVVLDVHGVGYEVYL-ANALSQ--KMNEELFLYTYQHVREDAILL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ + D + FM L +V+G+G + A +LS + E++E+I + K + +PGI K Sbjct: 58 FGFIKEEDYEVFMRLINVKGIGPKTAQTMLSVCSGKEMIEAIENDDIKRLKSLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK +SL E + AL++LGY +Q Sbjct: 118 AGQIVLDLKGKFVSL-------------ETSDSPVSNPVWTQVQDALLSLGYKTNQ---- 160 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + + K+ E + +++R AL ++ Sbjct: 161 LTKIKKEFENTELGEDEMLRQALILLA 187 >gi|295099824|emb|CBK88913.1| Holliday junction DNA helicase subunit RuvA [Eubacterium cylindroides T2-87] Length = 193 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 110/208 (52%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D V++DV GV Y ++ + KIGD L+ H+R+D + L Sbjct: 1 MIAFVSGIVRLIRTDSVVLDVHGVGYEVFISN---ALTQKIGDELFLYTYQHVREDAMLL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D + FM L +V+G+G + A +L+ ++++++I + K++ +PGI K Sbjct: 58 YGFIKQEDYEVFMRLINVKGIGPKTAQTMLAVCPGSKMIQAIEEDDVKLLKSLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK +S+ + + + V KE ALV LGY +Q Sbjct: 118 ASQIVLDLKGKFVSVETKEETISNPVWKETQ-------------EALVALGYKVNQ---- 160 Query: 181 VVSVLKKEKNIAD--DSQIIRLALRAIS 206 + V K+ N D ++++R+AL ++ Sbjct: 161 LSGVRKELANKTDLNVNEMLRMALAILA 188 >gi|315656670|ref|ZP_07909557.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492625|gb|EFU82229.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 194 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + D + V G+ TL+ L G T+ +R+D + L Sbjct: 1 MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALV-PGTTATVQTYLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V+G+G ++ + LS ++ L +++ + + IPG+ K Sbjct: 60 YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVVNSDVAALQGIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K +S V + + + AL NLGY Q AT A Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQALATEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V +V + +D +R AL+ + Sbjct: 170 VNAV-----SASDAPTALREALKYLGS 191 >gi|326693304|ref|ZP_08230309.1| Holliday junction DNA helicase RuvA [Leuconostoc argentinum KCTC 3773] Length = 197 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 16/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQ 57 M I G I +Y Y+++ D GV Y +Y P R + ++VE +R+++ Sbjct: 1 MYEYINGLITNIYPAYIVVCDRSGVGYKLYTANPYRF-----EQNVESHVYVEQIVRENE 55 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I L+GF+ + ++ F L +V G+G + A+ +L+ A LV ++ + + Q PG+ Sbjct: 56 IALYGFMDENEKILFNKLLNVSGIGPKSALAILASGDAQGLVNAVANDDVSYLTQFPGVG 115 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +I+ +LKGK L+ D++ + + A +LGY + Sbjct: 116 KKTAQQIILDLKGKLGDLAVSAGLDLTTSQPAANNQALADALAAL-----TSLGYSAKEI 170 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + + D IR AL+ + Sbjct: 171 AK-IEKTLAQTADTTDG--YIRSALKLL 195 >gi|309805314|ref|ZP_07699365.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 09V1-c] gi|308165390|gb|EFO67622.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 09V1-c] Length = 167 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 12/179 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIINPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK 167 >gi|330896128|gb|EGH28349.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 128 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 67/117 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVG 117 >gi|221632653|ref|YP_002521874.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM 5159] gi|254767395|sp|B9KYT2|RUVA_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221156321|gb|ACM05448.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM 5159] Length = 191 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + VL+DVQGV + + TL LG+ GD +L +R+D++ L Sbjct: 1 MIRGVRGTLVAKRSGEVLVDVQGVTFRVQTSATTLQELGEPGDLVSLVTHLIVREDELAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+ L +V GVG R A+ +LS L E I + + +A+ PGI K Sbjct: 61 YGFATEAELELFLSLLAVSGVGPRGALNLLSLAAPDRLTEWIRGERIEELARAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL+G+ +L+ V + ++AL LGY +A A Sbjct: 121 ASRIVLELRGRLPALTEVQAGE---------------PIDQELVAALQALGYTAQEARQA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + I ALR ++ Sbjct: 166 --ATHPEVRRAPSLEERIVAALRQLA 189 >gi|296393859|ref|YP_003658743.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM 44985] gi|296181006|gb|ADG97912.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM 44985] Length = 199 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + D+V+++ G+ + + T + + G L +R+D L Sbjct: 1 MIASIRGEAVEVGADHVVVECAGLGHHVVVLPSTAAAATR-GAEVRLATSFIVREDAQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +L++V GVG ++AM VLS + L +I + + ++PG+ ++ Sbjct: 60 YGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPVALRRAIGEGDLGALTKVPGVGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K S + + LV LG+ A +A Sbjct: 120 AERLALELKEKIGGPPSAAANLGAPEGS--------ALVRQQVVDGLVGLGFPLKPAESA 171 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 SV+++ A + +R AL Sbjct: 172 ADSVMQENPE-ASPAVALRGAL 192 >gi|328881167|emb|CCA54406.1| Holliday junction DNA helicase RuvA [Streptomyces venezuelae ATCC 10712] Length = 210 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 11/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV + C TL+ L +IG L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGVGMAVQCTPGTLAGL-RIGADARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRVAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ + V ++A + +AL+ LGY +A A Sbjct: 120 AQKLLL----ELKDKLGAPLGSSGLVGAQRAAAAGPAPWTEQLSAALIGLGYASREAEEA 175 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + A Q++R AL++++ Sbjct: 176 VAAVTPQAEEAIAAGGAAPVPQLLRAALQSLN 207 >gi|294786921|ref|ZP_06752175.1| holliday junction DNA helicase RuvA [Parascardovia denticolens F0305] gi|315226557|ref|ZP_07868345.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia denticolens DSM 10105] gi|294485754|gb|EFG33388.1| holliday junction DNA helicase RuvA [Parascardovia denticolens F0305] gi|315120689|gb|EFT83821.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia denticolens DSM 10105] Length = 207 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G++ + D +L+DV G+ + + P R L+ L G + + QD I L Sbjct: 1 MIGSLEGDVLSVSADGLLLDVNGIGFSLRMPARDLAGLHAGGHE-RILTVMTVSQDAIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS + F LQ V GVG + AM +LS ++ EL ++I + + + PG+ K Sbjct: 60 YGFLSASSKTLFTQLQKVSGVGPKAAMAILSTLSPEELGKAIHDNDVTALTRAPGVGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G SV + + + S I L +LG+ + A A Sbjct: 120 AQKIILELHG------SVDFSSLDEAPASRVEEGGLDSSVDQVIQGLSSLGWQRRDAYQA 173 Query: 181 VVSVLKKEKNIADD-----SQIIRLALRAI 205 + L + A Q++R AL + Sbjct: 174 TMEALGQLSLTAPLTAGQIPQVLRKALSDL 203 >gi|108804162|ref|YP_644099.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter xylanophilus DSM 9941] gi|123069128|sp|Q1AWE1|RUVA_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|108765405|gb|ABG04287.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter xylanophilus DSM 9941] Length = 196 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + V++D GV Y P+ TL L +G+ C + +R+D + L Sbjct: 1 MIDRLRGQLVEKDPEGVVVDCGGVGYRAAAPLSTLRALPAVGEECVVHTRMVVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L SV VG R+A+ VLS +T +++E+ + A +PG+ K Sbjct: 61 FGFATREEREAFDALTSVSKVGPRLALAVLSAMTPGQMMEAAARGDVHRFAAVPGLGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+G+ + + + A AL LGY ++A A Sbjct: 121 AERLVLELRGR---------ELAAAGGGGGVAAGEGDGPFMEAREALTGLGYSLEEAERA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V +E Q I+ ALR I Sbjct: 172 LRDVPPQE----TVEQYIKAALRKI 192 >gi|256391548|ref|YP_003113112.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM 44928] gi|256357774|gb|ACU71271.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM 44928] Length = 208 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 19/215 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +++V GV +++C TL+ L +G+ LF +R+D + L Sbjct: 1 MIAFVSGPVAAVTPTSAVVEVGGVGMLVHCGPGTLAAL-AVGEKAKLFTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R F LLQ+ G+G +VA +LS L + + + Q+PGI K Sbjct: 60 YGFATDDERTVFELLQTASGIGPKVAQAMLSVHAPDTLRTIFMTGDEAALTQVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A + + + QAH + S+ + + AL LG+ + Sbjct: 120 AQ--------RLLLELKERLGPPTGAVPGQAHNGWSRAGLGSWRVQLLEALTGLGWTARE 171 Query: 177 ATTAVVSV--LKKEKNIAD----DSQIIRLALRAI 205 A AV +V L E+ A +++ ALR + Sbjct: 172 ADDAVSAVGPLAAEQEAAGQTVQLGPLLKAALRTM 206 >gi|124023288|ref|YP_001017595.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9303] gi|123963574|gb|ABM78330.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 85/221 (38%), Gaps = 15/221 (6%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G ++ V++ GV Y + R LS + + L++ R D Sbjct: 9 MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 68 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F L V GVG ++A+ +L ELVE+I+ + + + Q G+ Sbjct: 69 GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 128 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ K S N S L LGY + Sbjct: 129 GKRTAERLAVELRTKLAEFSCRDPGMSLVDNGVIDSHQLKDSSLHELQITLGGLGYEDLE 188 Query: 177 ATTAVVSVLKKE-----------KNIADDSQIIRLALRAIS 206 A+ +V I D +R +LR +S Sbjct: 189 IRRAIRAVASGAAIGARDMPESVPAIDDTDAWLRASLRWLS 229 >gi|257126622|ref|YP_003164736.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis C-1013-b] gi|257050561|gb|ACV39745.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis C-1013-b] Length = 207 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + DYV +D+ G+ Y IY ++T + I L++ T++++D I L Sbjct: 1 MFEYICGKLSVKKIDYVALDINGLAYKIYISLKTFEKMSNIESTEKLYIHTNVKEDNISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L SV GVG ++A+ +LS E+V+ I+ K+ ++PG+ +K Sbjct: 61 YGFKTQNERELFKALISVNGVGPKLAIAILSTFNTKEIVDIILENEPKIFIKVPGLGIKK 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ +LK K L S ++ ++ + +N + + AL +LGY + Sbjct: 121 AQKIILDLKDKVKKLEFSEIINENSNTLNGNNISSSEILLMKEDLKLALESLGYADTDVS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + + + I + S+ I++ L+ I Sbjct: 181 KWIKN--DELIKIKNISEAIKIILKRI 205 >gi|119489537|ref|ZP_01622298.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106] gi|119454616|gb|EAW35763.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106] Length = 211 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 13/213 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG +KG + + ++ +L++ + Y + R ++ L +G+ +F +R+ Sbjct: 1 MIGYLKGTVVAIQKNNSNRVILLLETNNIGYEVQIVPRMIAQLPTMGESIQVFTHLQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 DQ+ L+GF S +R F L SV G+G ++A+ +L+ + TELV++I+ +N+KV+A+ PG Sbjct: 61 DQMVLYGFSSFAERDLFRQLVSVSGIGTQLAIALLNTLELTELVQAIVGENTKVLAKTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K + + L+ LGY Sbjct: 121 VGTKTAQRIALELKTKLAQWRQEAGLTTLVSSGLTVEV------QEEIEMTLLALGYTGS 174 Query: 176 QATTAVV--SVLKKEKNIADDSQIIRLALRAIS 206 + A+ S ++ + + I+ A+ ++ Sbjct: 175 EVMQALEFLSQEQQLSSQTSTEEWIKKAIAWMA 207 >gi|289641361|ref|ZP_06473526.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca glomerata] gi|289508823|gb|EFD29757.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca glomerata] Length = 264 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 8/183 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV ++ C TL+ L ++G L +R+ ++ L Sbjct: 1 MIASVAGTVAALSPDAAVVEVGGVGLLVQCAPATLAGL-RVGQQARLVTTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LQS GVG R+A VL + + ++ ++ + ++PGI K Sbjct: 60 YGFADADERDVFETLQSASGVGPRLAQAVLGVHSPDSVRRAVAAEDLAALTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVV-------QQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A RI+ +L+ + + + + + AL+ LGY Sbjct: 120 AQRIVLDLRDRLGPPVPAPAAGDDGVGVGGAGGDGAAPAAGTGVTAGEQVRLALLGLGYT 179 Query: 174 QDQ 176 + Sbjct: 180 ARE 182 >gi|298491329|ref|YP_003721506.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708] gi|298233247|gb|ADI64383.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708] Length = 212 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIE---GLYEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + + + V++ +V G+ Y + P R + L GD +F +R+ Sbjct: 1 MISYLKGIVACIQAISSNRVILTLEVNGLGYDLQVPQRLANQLTTTGDVVQIFTHYQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+GA +A+ +L + ELV++II N++++ Q PG Sbjct: 61 EVPLLYGFSSPAERDLFRHLLSVTGIGAALAITLLDTLELPELVQAIIAANTQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K I ++ P L LGY Sbjct: 121 VGKKTAERICLELKSKLIEWRKSAAFFVATGGP-------APGILEEVQMTLFALGYTAH 173 Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAISC 207 + + A+ V + A I+ A+ +S Sbjct: 174 EVSHALHVVSENIGLPKDAYVEDWIKQAIGHLSS 207 >gi|46201286|ref|ZP_00055335.2| COG0632: Holliday junction resolvasome, DNA-binding subunit [Magnetospirillum magnetotacticum MS-1] Length = 173 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 96/166 (57%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 ++G TLF+ET +R+D I LFGFL +R WF LL +VQGVGA+V + +LS +L+ Sbjct: 2 EVGSAATLFIETQVREDAISLFGFLDTGERDWFRLLTTVQGVGAKVGLAILSVAAPDQLL 61 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159 + I Q+ + + G+ K+A RI+TELK KA ++ + A + + Sbjct: 62 QIIAAQDKAGLTRANGVGPKLAVRILTELKDKAGKIALGGFNPTAGAVASSAPLPAASGR 121 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A+SALVNLGY + +A AV ++ + AD S +IR +L+ + Sbjct: 122 MEDAVSALVNLGYKRLEAFQAVGETARELGDDADSSALIRASLKRL 167 >gi|304440231|ref|ZP_07400121.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371280|gb|EFM24896.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 193 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG E+ V I V G+ +I R + ++ + TLF + +R+D I + Sbjct: 1 MIDIVKGIAILKEENSVTIMVGGIGLLINVSSRENKEI-RLNEEITLFTKMVVREDDISI 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL V G+G +VAMG++ EL + I+ + K + + PG+ K Sbjct: 60 YGFISKRERSIFSLLTMVSGIGPKVAMGIMGMYGEEELRKYILSSDVKSLTKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + + D+ S+P +AI ALV LG+ + A Sbjct: 120 AERIILELKDRIVKIFGDFIPDVK---------ESVPLENDDAIEALVGLGFSAIEVKNA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++V + +++ D + I++AL+ I Sbjct: 171 LMNV---DPSLSVDDK-IKIALKNI 191 >gi|111221574|ref|YP_712368.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a] gi|111149106|emb|CAJ60789.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a] Length = 252 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 8/193 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V GV ++ C TL+ L +IG+ +L +R+ ++ L Sbjct: 1 MIASLAGTVRALGPLSAVVEVGGVGLLVQCTPATLARL-RIGEPASLATTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +LQS GVG ++A VL + ++ ++ + ++PGI K Sbjct: 60 YGFPDADARDVFEILQSAAGVGPKLAQAVLGVHEPDAVRRAVAEEDLAALTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDM-------SCVNKEQAHICSMPSFAINAISALVNLGYG 173 A RI+ +L+ + A + A AL+ LGY Sbjct: 120 AQRIVLDLRDRLGPPRGAAVPGPRSGGADLGAGGVGAAGPGEAGAVADTVREALIGLGYS 179 Query: 174 QDQATTAVVSVLK 186 +A AV L Sbjct: 180 AREADDAVSRALA 192 >gi|255263783|ref|ZP_05343125.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62] gi|255106118|gb|EET48792.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62] Length = 220 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 13/218 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D+VLIDV+GV Y++Y R ++ L G+ LF + +R+D ++L Sbjct: 1 MIGKIAGRIDYRAADHVLIDVRGVGYVVYVSDRVMASLPGNGEAVALFTDLLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ +M +L I A + +I L + IA G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASMAILGAIGAEGVSRAIALGDWAAIATAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI------------CSMPSFAINAISALV 168 A R + +LK KA ++ ++ + +A + A+SAL Sbjct: 121 AQRAVLDLKNKAHAVMAMGGTLAEAQGEVEAEGEVIETAAPKVTRSGNGAAQSEALSALG 180 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGY A AV + AD S++IR AL+ ++ Sbjct: 181 NLGYSPSDAAGAVAEASGGAPD-ADTSELIRAALKLLA 217 >gi|114798884|ref|YP_758880.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC 15444] gi|114739058|gb|ABI77183.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC 15444] Length = 207 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 5/207 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG++KG + + D+VLIDV GV Y+ R L+ L + GD T +ET + + I LF Sbjct: 3 IGRLKGEVAAIGLDHVLIDVNGVGYVALAGTRLLARL-QTGDAITAHIETRVTESSITLF 61 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 F +D +R WF+ LQ V GV + A+ +L ++ +++++I L ++ + GI K+ Sbjct: 62 AFATDEERAWFVRLQDVPGVAGKSALAILDGLSPADIMDAIALGDAGAFTRAKGIGKKLG 121 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 RI+TEL GKA L + +++ V + A+SALVNLGY Q +A Sbjct: 122 ERIVTELAGKAPPLGRFGKFEVAAVAGLASAQPASAATGARGEAVSALVNLGYSQSEAAR 181 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + K + +++ AL+ ++ Sbjct: 182 AVAAAAKNGAE--EVGALVKGALKELA 206 >gi|194476717|ref|YP_002048896.1| putative holliday junction DNA helicase RuvA [Paulinella chromatophora] gi|171191724|gb|ACB42686.1| putative holliday junction DNA helicase RuvA [Paulinella chromatophora] Length = 215 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 97/212 (45%), Gaps = 7/212 (3%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI ++G + ++ + L++ G+ Y +Y R L K + L++ +R+ Sbjct: 1 MISWLRGELLKSWQQGTYNVALLNCGGIGYEVYLNRRDWEDLPKTREILELYIHMLVREK 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q L+GF+ DR F + ++ G+G ++A+ + + + L+E+II + + + GI Sbjct: 61 QWTLYGFIEFDDRDIFREIININGIGPQLALALQTELRGPRLIEAIINGDLVTLTKAHGI 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ TEL+ + ++L + + Q + + + + L LGY + + Sbjct: 121 GRRTAERLSTELRSRFVNLYHTNEVYLKQEGSIQG-VLNDSDLVHDIQNTLKTLGYNKLE 179 Query: 177 ATTAVVSVLKKEK--NIADDSQIIRLALRAIS 206 A+ + K +D +R AL +S Sbjct: 180 IQRAINKLKSKSSLVENSDFDVWLREALHWLS 211 >gi|225164626|ref|ZP_03726870.1| Holliday junction resolvasome DNA-binding subunit-like protein [Opitutaceae bacterium TAV2] gi|224800771|gb|EEG19123.1| Holliday junction resolvasome DNA-binding subunit-like protein [Opitutaceae bacterium TAV2] Length = 219 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 1/153 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + ++++ G Y + P+ T L +G L R+D L Sbjct: 1 MITSIQGLLTEATPLRAVVEINGFGYEVNIPVTTAEKLPAVGAKVKLHTIVIYREDAQTL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S +R +F L+ V GVG ++A+ ++SR++ L +I + +++ PGI K Sbjct: 61 YGFASPEERDFFRLMIEQVSGVGPKLALTIMSRMSLPVLEGAIRAGDISSLSKCPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152 A R++ EL+ K + + Sbjct: 121 TAERLVVELRAKVGASPAGGDAGSPVAGDGGTS 153 >gi|75909032|ref|YP_323328.1| Holliday junction DNA helicase RuvA [Anabaena variabilis ATCC 29413] gi|123758778|sp|Q3M9A3|RUVA_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|75702757|gb|ABA22433.1| Holliday junction DNA helicase subunit RuvA [Anabaena variabilis ATCC 29413] Length = 213 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIEGL---YEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + V++ +V G+ Y + P R L GD +F +R+ Sbjct: 1 MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV GVGA A+ +L + +LV++II N +++ Q PG Sbjct: 61 EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + KIA RI ELK K I ++ P L LGY Sbjct: 121 VGKKIADRICLELKAKLIEWRKSAGFFVATEGP-------APGILEEVQMTLFALGYTAH 173 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207 + + A+ V + A I+ A+ +S Sbjct: 174 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLSS 207 >gi|319937623|ref|ZP_08012027.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp. 29_1] gi|319807265|gb|EFW03877.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp. 29_1] Length = 188 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + D++++D QG+ Y+IY G ++V +++D I L Sbjct: 1 MYSYIKGIIVDMARDHIVVDNQGIGYLIYVSNPYQFT---KGKETLVYVYQQVKEDGILL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ L V+G+G + A+G+L+ ++++I +N + +IPGI K Sbjct: 58 FGFLSKEEKDLFLKLIMVKGIGCKTAIGILATGDVNAIIQAIESKNIVYLKKIPGIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK N + + AI L+ LGY + + Sbjct: 118 AQQIILDLQGKF--------------NGVISEMILTSVEFDEAIEVLIALGYKRQEVDKV 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ D + ++ AL + Sbjct: 164 MNTLSQEH---LDTNGYVKKALNLL 185 >gi|17227871|ref|NP_484419.1| Holliday junction DNA helicase RuvA [Nostoc sp. PCC 7120] gi|20455248|sp|Q8YZT2|RUVA_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|17129720|dbj|BAB72333.1| holliday junction DNA helicase [Nostoc sp. PCC 7120] Length = 213 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIEGL---YEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + V++ +V G+ Y + P R L GD +F +R+ Sbjct: 1 MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV GVGA A+ +L + +LV++II N +++ Q PG Sbjct: 61 EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + KIA R+ ELK K I ++ P L LGY Sbjct: 121 VGKKIAERVCLELKAKLIEWRKSAGFFVATEGP-------APGILEEVQMTLFALGYTAH 173 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAISC 207 + + A+ V + A I+ A+ +S Sbjct: 174 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLSS 207 >gi|190571380|ref|YP_001975738.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018779|ref|ZP_03334587.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|254767401|sp|B3CMH6|RUVA_WOLPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190357652|emb|CAQ55096.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995730|gb|EEB56370.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 190 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 116/207 (56%), Gaps = 19/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQI 58 MIG ++G ++ + D+++++V V YI+Y +TLS IG L ++T+ R++ Sbjct: 1 MIGNLRGIVDEVCSDHIILNVNDVGYIVYLSAKTLSA-CSIGSRVKLLIDTYANSRENVT 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF+S ++Q LL V GV + AM +LS++T +L +II ++ + ++ G+ + Sbjct: 60 QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIINEDKLAL-KVSGLGL 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L + + S + +A+SAL+NLGY + +A Sbjct: 119 KLINRIITELNGKVSKL--------------EINNNHFHSISEDALSALINLGYERTKAY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + + + N+ D IIR+AL+ I Sbjct: 165 DTIKKIEDESPNL-DTKDIIRMALKTI 190 >gi|257469281|ref|ZP_05633375.1| Holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC 49185] gi|317063528|ref|ZP_07928013.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC 49185] gi|313689204|gb|EFS26039.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC 49185] Length = 198 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G +E DY+ +DV GV Y + +RT + G+ L++ ++++D +L Sbjct: 1 MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFISA-GEEVKLYIYNYIKEDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R F +L V+G+G +A+ V+S + + + + + ++P + K Sbjct: 60 IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYTNLKRVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + +++ +LK K +L D ++ ISAL LGY + + T Sbjct: 120 SQQLILDLKSKLKTL------DALSIDTRNDDAAKHLMIEEELISALEGLGYSKKEINTL 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + ++ + I+ L+ ++ Sbjct: 174 ITR--DELRSFKTIEEAIKGVLKKVN 197 >gi|260890744|ref|ZP_05902007.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254] gi|260859622|gb|EEX74122.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254] Length = 211 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + DYV +D+ G+ Y +Y ++T L IG+ L+V T++++D I L Sbjct: 1 MFEYISGKLTIKKIDYVALDINGLAYKVYVSLKTFEKLDNIGNDEKLYVYTNVKEDDISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L S+ GVG ++ + +LS E+++ + SK+ ++PG+ +K Sbjct: 61 YGFKTQNERELFKALISISGVGPKLGIAILSTFNTREIIDIVNENESKIFTRVPGLGIKK 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174 A +I+ +LK K L + I S S + AL +LGY Sbjct: 121 AQKIILDLKDKVKKLDLTETIEEISDISSGKLITSNTSNPKLLLMKEDLKLALESLGYIN 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ + D S+ I++ L+ I Sbjct: 181 SDVSKWITD--KELAQVKDISEAIKIILQKI 209 >gi|119509314|ref|ZP_01628464.1| Holliday junction DNA helicase motor protein [Nodularia spumigena CCY9414] gi|119466156|gb|EAW47043.1| Holliday junction DNA helicase motor protein [Nodularia spumigena CCY9414] Length = 213 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIEGL-----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + ++V + Y + P R L + G +F +R Sbjct: 1 MISYLKGIVAGIQTIGGGRMMLTLEVNNLGYDLQVPQRLAKQLPESGGVTQIFTHLQIRD 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+G A+ +L + +LV++II N++++ Q PG Sbjct: 61 EVPFLYGFASPAERDLFRQLLSVSGIGTACAIALLDTLEVPDLVQAIIAANTQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K + ++ P L LGY D Sbjct: 121 VGKKTAERICLELKTKLVEWRKSAGFFVATGGP-------APGILEEVQMTLFALGYTAD 173 Query: 176 QATTAVVSVLKKEKNIAD--DSQIIRLALRAISC 207 + + A+ V + D I+ A+ +S Sbjct: 174 EVSHALHVVSEDIGLTKDAYVEDWIKQAIAHLSS 207 >gi|87304141|ref|ZP_01086682.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701] gi|87281448|gb|EAQ73513.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701] Length = 197 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 8/200 (4%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + VL+ GV Y + R L + TL++ R+D Sbjct: 1 MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F LL V GVG + + +L ELV +I + K + Q GI Sbjct: 60 GSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGGDLKRLCQAQGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ +L+ + + Q E +P + + L++LGY + + Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLDPQPSLV---EGLASEQIPEAGEDVEATLISLGYDELE 176 Query: 177 ATTAVVSVLKKEKNIADDSQ 196 A+ ++ + Sbjct: 177 IRRAIRAIADGASGVPPSGT 196 >gi|296127494|ref|YP_003634746.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM 12563] gi|296019310|gb|ADG72547.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM 12563] Length = 194 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 102/207 (49%), Gaps = 14/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+GN++ + E + + GV Y I + K D L+ + ++D + L Sbjct: 1 MFAFIEGNVQIISEGVIALVCNGVGYEIIVSKKLE---VKNDDKIRLYTQLIHKEDAMIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +++ F L + GVG ++AM +LS + +L+ + ++ ++ ++ G+ +K Sbjct: 58 YGFLTREEKKMFSTLIAASGVGPKLAMEILSTYSINDLMHILFNKDINLLKKVQGMGLKK 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ EL+ K + +N + + + + I AL++LG+ ++A A Sbjct: 118 AEKLLFELRDKIEKID---------INISSSSVQNYNDNESDVIKALISLGFSNNEAVKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + S+ + K+ +I ALR +S Sbjct: 169 LSSI--ENKDNMSAEDLISNALRNLSS 193 >gi|331668556|ref|ZP_08369404.1| holliday junction DNA helicase RuvA [Escherichia coli TA271] gi|331063750|gb|EGI35661.1| holliday junction DNA helicase RuvA [Escherichia coli TA271] gi|332756762|gb|EGJ87109.1| holliday junction DNA helicase RuvA [Shigella flexneri 4343-70] Length = 123 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119 >gi|167755866|ref|ZP_02427993.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402] gi|237734834|ref|ZP_04565315.1| holliday junction DNA helicase subunit RuvA [Mollicutes bacterium D7] gi|167704805|gb|EDS19384.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402] gi|229382162|gb|EEO32253.1| holliday junction DNA helicase subunit RuvA [Coprobacillus sp. D7] Length = 188 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + D+++++ G+ Y+IY G +F+ +++D + L Sbjct: 1 MYSYLIGTVVEMNIDHIVVENSGIGYLIYVNNPYEYT---RGKEIKIFLYQQVKEDALLL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F+ L V+G+G + A+G+L+ T ++ +I N + +IPGI K Sbjct: 58 YGFKTSEEKEMFLKLILVKGIGCKTAIGILATGDVTSIISAIETGNVAYLKKIPGIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK N A + A L+ LGY + + A Sbjct: 118 AQQIILDLQGKFK-------------NTPTATTLINNNDLDEAAEVLIALGYKKSEVDKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +L ++ D + ++ AL + Sbjct: 165 LAVLLNEK---LDTNGYVKRALSLL 186 >gi|327398312|ref|YP_004339181.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima DSM 10411] gi|327180941|gb|AEA33122.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima DSM 10411] Length = 189 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + +IDV G+ I P+ T + L +IG+ CTL E + + ++L Sbjct: 1 MLEAVRGTLVDKTNLKAVIDVNGLMLDISIPLSTFNKLPEIGEECTLLCELVIGEKSLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L+ + +GA+ A+ +LS I+ + +I QN +++ +IPGI K Sbjct: 61 YGFSTKEEKNLFNSLRKISKIGAQTAISILSNISIEQFYRAIEEQNKELLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ E K P +AI+ L LG+ Q A+ Sbjct: 121 AISIIVEFSSKIPK-------------------TDNPPIVDDAITTLQGLGFSQSDASKI 161 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + + NI +I+ +L+ I Sbjct: 162 VNEIYRNKPNIT-IEDLIKESLKNI 185 >gi|126733600|ref|ZP_01749347.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp. CCS2] gi|126716466|gb|EBA13330.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp. CCS2] Length = 219 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 12/217 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV YI+Y R ++ L G+ LF + +R+D ++L Sbjct: 1 MIGKIAGRLEYRSTDHVLIDVRGVGYIVYVSERVMAGLTSNGEAVALFTDLLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ +M +L + A + +I L + +A+ G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASMAILGTLGAEGVSRAIALGDWNAVAKAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-----------N 169 A R+ ELK KA + ++ A N Sbjct: 121 AQRVTIELKDKAPGVMAMGGAVAEAQGDAVIEAEPTAPVQRAAAPKANAASAEALSALGN 180 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 LGY + V+ AD S +IR AL+ ++ Sbjct: 181 LGYAPG-EAASAVAEAAGAAPDADTSALIRAALKLLA 216 >gi|157736995|ref|YP_001489678.1| Holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018] gi|167012656|sp|A8EST5|RUVA_ARCB4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157698849|gb|ABV67009.1| holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018] Length = 185 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 22/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + ++V GV Y ++ + S + + D L + +R+D L Sbjct: 1 MIVGLIGKIIKKEPTQLNVNVNGVIYEVFVSLNCSSKI--VSDDVKLEITHIIREDAQSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +++ F + + GVG +VA+ + S T T + + + ++ ++PGI K Sbjct: 59 YGFLDSNEKKLFDTVIKINGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKG 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL G I + S S A+ A AL +LG+ +D Sbjct: 119 ASRILVELSGFII---------------DSNDETSGSSSALEAALALESLGFKKD----L 159 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V SVLK N ++ S +++ AL+ + Sbjct: 160 VSSVLKTCVN-SNTSDLVKEALKKL 183 >gi|323165015|gb|EFZ50805.1| holliday junction DNA helicase RuvA [Shigella sonnei 53G] Length = 123 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119 >gi|224436530|ref|ZP_03657539.1| Holliday junction DNA helicase RuvA [Helicobacter cinaedi CCUG 18818] gi|313143033|ref|ZP_07805226.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter cinaedi CCUG 18818] gi|313128064|gb|EFR45681.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter cinaedi CCUG 18818] Length = 195 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G I + IDV GV Y + + S L G+ G + +R+D Sbjct: 1 MIVGLRGVIIRSEPMMIDIDVGGVIYGVQMSLNATSKLRGEGGKEVKIICTQIIREDSHL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ ++++Q F L + GVG +VA+ +LS T E + I ++ + ++PGI K Sbjct: 61 LFGFVEEIEKQTFERLIKINGVGPKVALAILSTYTPMEFAKIISNKDVDALKKVPGIGAK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +IM ++ G L +S + + S A+ AL +LG+ A Sbjct: 121 GAGKIMVDVAGFFAGL-------ISDTSLADGKLSQENSLKNEALLALQSLGFKNTDAQK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + S++++LAL+ ++ Sbjct: 174 ALQGIEAQ-----SVSELVKLALKKLA 195 >gi|302344655|ref|YP_003809184.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM 2075] gi|301641268|gb|ADK86590.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM 2075] Length = 193 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + D+V++DV GV Y ++ + L + G+ +L T +R D I L Sbjct: 1 MIARLRGQLAARRPDHVVVDVGGVGYRVFVSLGAFCRLPQSGE-ISLLTHTIVRDDAIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ + + F LL SV GVG ++A+ +LS + EL +I ++ +A+ PG+ K Sbjct: 60 YGFINEQEWEAFRLLVSVAGVGPKLALAILSGLEVGELWAAIRAGDAARLAKTPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L G+ V ++ A + + A +A SAL NLGY + +A A Sbjct: 120 AGRLVVDLAGRLP------------VGEQPAAAVAPGTAADDAQSALCNLGYPEAKAKKA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L + A ++RLAL+ ++ Sbjct: 168 VDKALAVAGDGAALEDLLRLALKELA 193 >gi|57239403|ref|YP_180539.1| Holliday junction DNA helicase RuvA [Ehrlichia ruminantium str. Welgevonden] gi|58579373|ref|YP_197585.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Welgevonden] gi|81352832|sp|Q5HAK5|RUVA_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57161482|emb|CAH58408.1| putative Holliday junction DNA helicase RuvA [Ehrlichia ruminantium str. Welgevonden] gi|58417999|emb|CAI27203.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Welgevonden] Length = 191 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 118/207 (57%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR- 59 MIG I GN+E + + Y++++V + YIIY + L K+GD L++ET++ +D I Sbjct: 1 MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQT-CKVGDNIKLYIETYVNRDNITQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ ++ + +L ++ G+ + A+ +LS+++ ++ +++ + K+ + GI K Sbjct: 60 LYGFLNRQEQDYLKMLVTINGINYKTALSILSKLSPEQIFSAVVNND-KIAFKGNGIGEK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TEL+ K + +++ S + + ++++AL++LGY + +A Sbjct: 119 LAGRIITELQYKINKMP--IEETFSIIEND------------DSLAALISLGYEKLKAFN 164 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + K + A ++IR AL+ +S Sbjct: 165 VIQEIKSKTPD-ASTQEVIRKALQKLS 190 >gi|319956495|ref|YP_004167758.1| holliday junction DNA helicase subunit ruva [Nitratifractor salsuginis DSM 16511] gi|319418899|gb|ADV46009.1| Holliday junction DNA helicase subunit RuvA [Nitratifractor salsuginis DSM 16511] Length = 187 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E ++ ++V G+ Y + + T S + L+V +R+D L Sbjct: 1 MIVGIEGKVEAREPTWLHLNVGGLIYEVNVSLNT-SNTVAGKEQVKLYVTQIIREDANLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L + GVG +VA V S T + + ++ ++ ++PGI K Sbjct: 60 FGFADRNEKKMFDTLLKINGVGPKVAQAVCSTFTPESFAKIVAAKDVALLKRVPGIGPKA 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL + S + A+ AL +LG+ ++ A Sbjct: 120 ASRILVELADFIV--------------DGSTAEGSAAADHQEAVMALESLGFKKEAIRKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D + +++ AL+ + Sbjct: 166 LA------GESGDTATLVKAALKKL 184 >gi|315636187|ref|ZP_07891441.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter butzleri JV22] gi|315479548|gb|EFU70227.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter butzleri JV22] Length = 185 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 22/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + ++V GV Y ++ + S + + D L + +R+D L Sbjct: 1 MIVGLIGKIIKKEPTQLNVNVNGVIYEVFVSLNCSSKI--VSDDVKLEITHIIREDAQSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +++ F + + GVG +VA+ + S T T + + + ++ ++PGI K Sbjct: 59 YGFLDSNEKKLFDTVIKINGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKG 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL G I + S S A+ A AL +LG+ +D Sbjct: 119 ASRILVELSGFII---------------DSNDETSGSSSALEAALALESLGFKKD----L 159 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V SVLK + ++ S +++ AL+ + Sbjct: 160 VSSVLKTCVS-SNTSDLVKEALKKL 183 >gi|167745589|ref|ZP_02417716.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662] gi|167654901|gb|EDR99030.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662] Length = 187 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 8/193 (4%) Query: 13 YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72 +++ G+ Y I P G IG ++ H+R+D I LFGF + + + F Sbjct: 2 TPGGAVVENNGIGYDIMMPAG-QEFPGGIGQEVRIYTHMHVREDDISLFGFRTKEELEAF 60 Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 LL V G+G +V + VLS ++ EL +++ +SK I++ PG+ K A +++ EL+ K Sbjct: 61 ELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKGAKKLILELRDKL 120 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 + M A + LV+LGY + +A A+ V + Sbjct: 121 DFEEFEQAEPMDFAGDLPAEDSVAVTA-----QGLVSLGYSRSEAMMAIKKV--ENAAEY 173 Query: 193 DDSQIIRLALRAI 205 Q+++ AL + Sbjct: 174 SPEQLLKKALTKL 186 >gi|16330186|ref|NP_440914.1| Holliday junction DNA helicase RuvA [Synechocystis sp. PCC 6803] gi|3122847|sp|P73554|RUVA_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|1652674|dbj|BAA17594.1| Holliday junction DNA helicase; RuvA [Synechocystis sp. PCC 6803] Length = 211 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSC-LGKIGDFCTLFVETHMR 54 MI ++G + + ++ ++++ V GV Y + P + +F +R Sbjct: 1 MIQFLQGQVVTVTKNIQNRWFLILSVNGVGYELQVPHSLAQQWTPPPPEPQQVFTHLLVR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 QDQI LFGF +R F L V G+GA++A+ ++ + LV++++ N K + Q P Sbjct: 61 QDQIALFGFGRLAERDLFGQLMGVTGIGAQLAIALIETLGLEGLVQAVVTGNVKQLCQTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A R+ ELK K + E + + L+ LGY Q Sbjct: 121 GVGKKGAERLALELKTKLSQWHK-----LQMGTGETDSTLPTTALLEDLEMTLLALGYTQ 175 Query: 175 DQATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206 + A+ V + D IR A+ +S Sbjct: 176 TEIQQAIAMVSQVPDVAQSEDPEVWIRQAIGWLS 209 >gi|159027980|emb|CAO87940.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 209 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 15/214 (7%) Query: 1 MIGKIKGNIEG--LYEDY---VLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54 MI ++G + +++DV + Y I P R +GK D +F +R Sbjct: 1 MINYLRGQAIEVIKTPNNRLILILDVNQIGYEIQIPSRLALDIGKDNNDSRQIFTHLLLR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF + +R F L SV GVGA++A+ ++ + ELV +I+ N+K++++ P Sbjct: 61 EDQPLLYGFGTAPERDLFRQLLSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ +K A RI ELK K + + + + I + L+ LGY Q Sbjct: 121 GVGLKTAERIALELKTKLAAWRQLKEATTTTTA-----ILPAAEILEDVQMTLLALGYSQ 175 Query: 175 DQATTAVVSVLKKEK---NIADDSQIIRLALRAI 205 ++ A+ +VL ++ I+ A+ + Sbjct: 176 EEIDRAI-AVLSQDALFSKNTQPEDWIKGAINWL 208 >gi|323342039|ref|ZP_08082272.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464464|gb|EFY09657.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 195 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 21/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G DYV++D G+ Y ++C + L + H+R+D I L Sbjct: 1 MIAFISGVAVDRGIDYVVVDNHGIGYQVFCGNPEMVTL---NESIIFHTYQHVREDAIIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ + F L +V+GVG + + +LSR + ++V +I ++ + ++PG+ K+ Sbjct: 58 FGFVEKRELDIFRQLITVKGVGPKTGITILSRFSGDDIVRAIDQEDMAFLKKLPGVGPKM 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS++M +LKGK I+ D K+ + A+ AL +LG+ + + Sbjct: 118 ASQMMLDLKGKFIA------SDTPSTTKKALPL------VDEALDALGDLGFKKVE---- 161 Query: 181 VVSVLKKEK--NIADDSQIIRLALRAI 205 + ++ + N+ +I+ L+ + Sbjct: 162 LNNIKHELSLLNLDSVDDMIKEGLKLL 188 >gi|225619866|ref|YP_002721123.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae WA1] gi|225214685|gb|ACN83419.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae WA1] Length = 192 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 99/207 (47%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G ++ + E + + GV Y I + K D L+ + R+D + L Sbjct: 1 MFAFIEGKVQIISEGVIALLCNGVGYEIIVSKK---LDVKNDDNIRLYTKLIHREDAMIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L S GVG ++AM VLS + +L+ + ++ ++ ++ G+ +K Sbjct: 58 YGFLTREEKNMFTTLMSASGVGPKLAMEVLSTYSINDLMHILFNKDINLLKKVSGMGVKK 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ EL+ K + + + + E + I AL++LG+ ++A A Sbjct: 118 AEKLLFELRDKIEKIDINISPSVISNDNE-----------SDVIKALISLGFSNNEAVKA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + ++ + K+ +I ALR +S Sbjct: 167 LSAI--ENKDNMTTEDLISNALRNLST 191 >gi|320537837|ref|ZP_08037755.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421] gi|320145314|gb|EFW37012.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421] Length = 203 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 16/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + I+ G+ + + ++L G +G +F + R+DQ+RL Sbjct: 1 MFNSINGVLTEKSSESICIETHGIEWSVAVSAKSLDSFGMVGATVRVFTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V G+G + A+ +LS ITA L ++ + ++ IPG+ K Sbjct: 61 FGFPTREERALFLDLIKVDGIGPKQALRILSGITAENLETALEEGDVHLLQTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG+ ++ + + S + I ALV +GY + AT Sbjct: 121 AQKMVLALKGQLSNIHEIGKS-----------ASIPQSEFEDIIQALVQMGYDRKAATEQ 169 Query: 181 VVSVL-----KKEKNIADDSQIIRLALRAISC 207 V + K +++++ R A+ A+S Sbjct: 170 VEAAASALRSKGANPQENENELFRSAIVALST 201 >gi|169350138|ref|ZP_02867076.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552] gi|169292921|gb|EDS75054.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552] Length = 186 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 95/205 (46%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I + D+++++ G+ Y+IY G +++ ++++D + L Sbjct: 1 MYSYIIGKIVEINVDHIVVENNGIGYLIYVSNPYEFT---KGKEIKVYLYQYVKEDVLLL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F+ L V+G+G + A+G+L+ ++ +I + + +IPGI K Sbjct: 58 YGFKTIEEKEMFLKLILVKGIGCKTAIGILATGDLERIISAIETNDVNYLKKIPGIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK + ++ A+ L+ LGY + + A Sbjct: 118 AKQIILDLQGKFNDVPITIK---------------TNDDLQEALEVLIALGYRKVEVEKA 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VL E D + ++ AL + Sbjct: 163 L-KVLADEN--LDTNGYVKRALSLL 184 >gi|242310193|ref|ZP_04809348.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pullorum MIT 98-5489] gi|239523490|gb|EEQ63356.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pullorum MIT 98-5489] Length = 192 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 MI ++G I + I GV Y ++ ++T + + + G+ TL +R+D Sbjct: 1 MIIALQGEIFFKEPTRIAIKCAGVIYEVFISLQTSNQITQTKGENLTLLTTHIIREDAQI 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL + +++ F L + GVG +VAM +LS T + + + K + ++PGI K Sbjct: 61 LFGFLENNEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL G ++ LS + S + AL +LGY D Sbjct: 121 SAGRILVELSGWSLELS------------QTNQTIKEDSTLHQVVLALESLGYKNDIIQK 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + K E Q+++ AL+ I Sbjct: 169 AIKGLEKDE-----VGQMVKAALKKI 189 >gi|116333841|ref|YP_795368.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus brevis ATCC 367] gi|122269472|sp|Q03R35|RUVA_LACBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116099188|gb|ABJ64337.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus brevis ATCC 367] Length = 202 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I +Y D+V++DV GV Y++ + T++V + L Sbjct: 1 MYEYLHGLITAVYPDHVVVDVNGVGYLVNTANPYRYEVSAT--AVTIYVYQAVSDTAQTL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L +V G+G + A+ +L+ L+ +I ++ + + PG+ K Sbjct: 59 YGFSDFAEKQLFLKLINVNGIGPKSALAILANPDHQGLMMAIKTNDTGFLTKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+ K L+ D + E A + +A++AL LGY + A Sbjct: 119 AGQIVLDLQNKLDDLAPAT-DDNTLFTPEVAPTTTENPQLADALAALTALGYRET-AVKK 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + L++ N + + LR + Sbjct: 177 ITAQLRQF-NGQTTNDYLSEGLRLL 200 >gi|28378879|ref|NP_785771.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1] gi|254557084|ref|YP_003063501.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1] gi|308181078|ref|YP_003925206.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258511|sp|Q88V02|RUVA_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28271716|emb|CAD64622.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1] gi|254046011|gb|ACT62804.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1] gi|308046569|gb|ADN99112.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 203 Score = 180 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 84/206 (40%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M G + + YV+I+V G+ Y + +G +++ + ++ + L Sbjct: 1 MYEYFLGQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPT--AVKMYIHQAVSENGMSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ F L V G+G + A+ +L+ L+++I +N+ + PG+ K Sbjct: 59 FGFFDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ V + A ++ + GY + Sbjct: 119 AQQIVLDLKGKLNDLNVDVTGQTALDVDAPAVDGALADALAALEAL----GYSKADVKKV 174 Query: 181 VVSVLK-KEKNIADDSQIIRLALRAI 205 + + AD + ++ LR + Sbjct: 175 TKKLETFSQTQGADTNTLLSEGLRLL 200 >gi|222099496|ref|YP_002534064.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359] gi|61657322|emb|CAI44241.1| holliday junction DNA helicase [Thermotoga neapolitana] gi|221571886|gb|ACM22698.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359] Length = 191 Score = 180 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 22/206 (10%) Query: 2 IGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 I I G + + V + G+ + I C +T L + C L+ + QD + L Sbjct: 5 IAGIYGKVVEKNGNTVFVSTNSGIVFEIACDTQTCEEL-EENRECYLYTFLSVSQDGVAL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F+ L V +G + A+ +LS L+ I Q+ + +++IPGIS K Sbjct: 64 YGFSDRKKKDLFLSLMKVSRLGPKTALKILSSEDVDTLISMINSQDVEGLSKIPGISRKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK ++ + ++ ALV+LGY + QA A Sbjct: 124 AERIVMELKGKF-----------------ESTVLKDLKTYHESLEALVSLGYPEKQARKA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + VLK + S++I+ ALR +S Sbjct: 167 IKEVLK---DGMSTSEVIKEALRILS 189 >gi|42527369|ref|NP_972467.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC 35405] gi|81411982|sp|Q73LJ9|RUVA_TREDE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|41817954|gb|AAS12378.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC 35405] Length = 201 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 105/211 (49%), Gaps = 15/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + G D V ++ G+ + I+ L LG +G ++ + R+DQ+RL Sbjct: 1 MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V+GVG R A+ ++S + ++ L +++ + + + PG+ K Sbjct: 61 FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNSSSLEKALEEGDLDTLQKAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKGK +L+ V + + V+ E + ++AL +G+ + Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCE----------YEDIVTALTEMGFERKSVIVQ 170 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAIS 206 V + ++ K + ++ ++ R ++ A+S Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201 >gi|149923021|ref|ZP_01911439.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica SIR-1] gi|149816142|gb|EDM75652.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica SIR-1] Length = 206 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 4/193 (2%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++DV+GV Y ++ I+TL+ + GD L+V T++R+D I LFGF +R F +L Sbjct: 11 VILDVKGVGYELFVSIQTLAGVPAEGDEVELWVHTNVREDAITLFGFAEAEERLLFRMLT 70 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 SV VG R A+ VL A EL+E+I ++S + +IPGI K + +I+ L K ++L Sbjct: 71 SVPKVGPRNAVAVLGGFPAIELLETIAAKDSAKLVKIPGIGKKTSEQIVLTLGDKVVTLL 130 Query: 137 SVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 +++ QA P F A L++LG+ A+V+V + A+ Sbjct: 131 ELLRAQRGGEPGTQAELLPAEAPDFGTEAREVLLSLGWKGRAVEKALVAVEAELAEGANV 190 Query: 195 --SQIIRLALRAI 205 ++R+ L + Sbjct: 191 QLDALVRMTLAKL 203 >gi|224418856|ref|ZP_03656862.1| Holliday junction DNA helicase RuvA [Helicobacter canadensis MIT 98-5491] gi|253828156|ref|ZP_04871041.1| Holliday junction DNA helicase motor protein [Helicobacter canadensis MIT 98-5491] gi|313142373|ref|ZP_07804566.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter canadensis MIT 98-5491] gi|253511562|gb|EES90221.1| Holliday junction DNA helicase motor protein [Helicobacter canadensis MIT 98-5491] gi|313131404|gb|EFR49021.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter canadensis MIT 98-5491] Length = 191 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 MI ++G I + I+ GV Y ++ ++T + + + GD TL +R+D Sbjct: 1 MIIALEGKIFAKEPTKIAINCTGVVYEVFISLQTSNQITQNKGDSITLLTTHIIREDVQN 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL +++ F L + GVG +VAM +LS T + + + K + ++PGI K Sbjct: 61 LFGFLESSEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVEGNDIKSMQRVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL G ++ LS Q S I AL +LGY D Sbjct: 121 SAGRILVELSGWSLELS-------------QNETNHKDSDYNQVILALESLGYKNDIIQK 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + K E Q+++ AL+ I Sbjct: 168 AIKGLEKNE-----VGQMVKAALKKI 188 >gi|46199998|ref|YP_005665.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27] gi|55980260|ref|YP_143557.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8] gi|20455264|sp|Q9F1Q3|RUVA_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81405352|sp|Q72GZ9|RUVA_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24987359|pdb|1IXR|A Chain A, Ruva-Ruvb Complex gi|24987360|pdb|1IXR|B Chain B, Ruva-Ruvb Complex gi|11559438|dbj|BAB18786.1| Holliday junction binding protein [Thermus thermophilus] gi|46197625|gb|AAS82038.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27] gi|55771673|dbj|BAD70114.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8] Length = 191 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++ GV + + P L L + G + ++++ + L Sbjct: 1 MIRYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQAL-EEGKEVGVHTHLLLKEEGLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F LL SV GVG +VA+ +LS + L +++ +++++ G+ ++ Sbjct: 60 YGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELKGK A A A+ AL LG+ + QA Sbjct: 120 AERIALELKGKVPPHLL-------------AGEKVESEAAEEAVMALAALGFKEAQARAV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L + A +I+ AL+ + Sbjct: 167 VLDLLAQNPK-ARAQDLIKEALKRL 190 >gi|168333338|ref|ZP_02691622.1| Holliday junction DNA helicase RuvA [Epulopiscium sp. 'N.t. morphotype B'] Length = 183 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIR 59 MIG + G + +E+ +L++V G+ Y I+ GKI +++ ++++D Sbjct: 1 MIGYLVGTVAERFENIILLEVNGIGYEIFM-------XGKIDVAEVKIYIYENIKEDAYD 53 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+S +++ F L SV G+G + A L + LVE I+ +++ I ++PGI K Sbjct: 54 LYGFVSLAEKELFKKLISVNGIGPKAA-AALIVLHGINLVECIVNEDASEITRVPGIGAK 112 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 IASR++ ELK K + ++ ++ + A +ALV LGY + QA Sbjct: 113 IASRLILELKDKLSAFKTLEKR-------------VVVDGLEEATAALVALGYNKKQAAR 159 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V +I D I+ AL + Sbjct: 160 AVNAVYNYSDSIEDT---IKKALAVL 182 >gi|309811443|ref|ZP_07705229.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185] gi|308434590|gb|EFP58436.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185] Length = 201 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 7/167 (4%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 + G+ L +R+D + LFGF D +R F +Q+V GVG R+A+ +L+ +L Sbjct: 39 RPGESMRLATSLVVREDSLTLFGFADDDERALFEQVQTVSGVGPRLALAMLAVHPPQQLA 98 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159 +I + + + ++PGI K A RI+ EL+ K +S S Q + + Sbjct: 99 TAIAGGDVRALTKVPGIGKKGAERIVLELRDKVVSASGDGGQAAPQA------VVPATAG 152 Query: 160 AINAISALVNLGYGQDQATTAVVSVLK-KEKNIADDSQIIRLALRAI 205 AL+ LG+ QA AV V E A+ ++RLALR + Sbjct: 153 GDQVAEALIGLGWSAKQAEDAVAKVAARPEAEGANTPTVLRLALREL 199 >gi|169333981|ref|ZP_02861174.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM 17244] gi|169258698|gb|EDS72664.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM 17244] Length = 199 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 97/207 (46%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M IKG++ + E Y+ I+ GV +++ T + L + ++ +R++ + Sbjct: 1 MFDYIKGDVTDIREGYLTIENKSGVGFLLNVSENTATDLINDREDVKVYTYMAVRENDVS 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +R+ F L +V +G ++A+ +LS ++ +V +I+ ++ K + G+ K Sbjct: 61 LFGFSTLFEREIFFKLLTVPKIGPKIALSILSALSPNMIVAAIMNKDYKSLCTANGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ L+ K L + + ++ +N AI L +LG+ + A Sbjct: 121 AAEQIVVTLQDKFGDLPEIEEITVNDMN-------INNDLKDEAILGLTSLGFDRAYAAK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 V + + I+ LAL+ ++ Sbjct: 174 IVREI--SVDDDLTIEDILSLALQKVN 198 >gi|256852230|ref|ZP_05557616.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 27-2-CHN] gi|260661738|ref|ZP_05862649.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 115-3-CHN] gi|282932642|ref|ZP_06338056.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] gi|297205604|ref|ZP_06923000.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus jensenii JV-V16] gi|256615276|gb|EEU20467.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 27-2-CHN] gi|260547485|gb|EEX23464.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 115-3-CHN] gi|281303216|gb|EFA95404.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] gi|297150182|gb|EFH30479.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus jensenii JV-V16] Length = 193 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 16/200 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++ +DV G + I+ + S G ++VE +R + I L Sbjct: 1 MYEYLEGTVTIITPSFIALDVGGQGFKIF-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + AM +++ ++ L ++I + + PG+ K Sbjct: 58 YGFESSDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S V+QD+ + QA +A+ AL LGY + + Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166 Query: 181 VVSVLKKEKNIADDSQIIRL 200 + K + AD + I+ Sbjct: 167 KPKLEKSSFDTAD--EYIKE 184 >gi|172036123|ref|YP_001802624.1| Holliday junction DNA helicase RuvA [Cyanothece sp. ATCC 51142] gi|226698729|sp|B1WUV7|RUVA_CYAA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171697577|gb|ACB50558.1| Holliday junction DNA helicase [Cyanothece sp. ATCC 51142] Length = 212 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 99/214 (46%), Gaps = 13/214 (6%) Query: 1 MIGKIKG---NIEGLYEDYV--LIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI +KG + + V +++V + Y + P + + + D +F ++ Sbjct: 1 MISYLKGSPIEVIKNTNNRVILVLEVNEIGYELQIPSKLGREISQEKLDTIQIFTHVQIK 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF + +R+ F L SV G+GA+ A+ ++ + ELV++I+ N ++++Q Sbjct: 61 EDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQPS 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI K A RI EL+ K +V ++ + + L+ LGY Sbjct: 121 GIGRKTAERIALELRTKLSQWRKMVGVTVTS-----SAAMPSLEILEDIEMTLLALGYTN 175 Query: 175 DQATTAVVSVLKKEKNI--ADDSQIIRLALRAIS 206 ++ A+ ++ + + + + I+ A+ +S Sbjct: 176 EEINKAISTLSQDNLMLKNTNTEEWIKEAIAWLS 209 >gi|317488563|ref|ZP_07947108.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA] gi|316912305|gb|EFV33869.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + I+V GV Y + +LS L + G + +R D + L Sbjct: 1 MIAFLKGVLAAKTATTAFIEVNGVGYAVGMSQASLSKLPEAGAAVEVHTFLQVRDDGLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F L V GVG +VA+ LS + LV ++ Q+ + +IPG+ K Sbjct: 61 FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG + ++ + E A + + AL+++G+ ++A A Sbjct: 121 ASRIILELKG-------SFDEGLAGLFDEAAPAVASAANLAGTREALLSMGFTSEEADVA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 LK A +S +++ AL+ + Sbjct: 174 ----LKGAPEGAAESVLLQYALKRLGT 196 >gi|163783946|ref|ZP_02178915.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159880781|gb|EDP74316.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 180 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 29/206 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + D+++I+ I P + ++ + + RL Sbjct: 1 MIDYIKGKVIEVLNDFIVIETGNFGIKIETPHKF------EKKDTKIYTYLTFKDESFRL 54 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF R+ F+ L S+ G+G + A +L + ++ +++ +PGI K Sbjct: 55 FGFKDRQTRELFIKLTSINGIGVKHAFSILKNFNYEDFTLAVENNRIDLLSSVPGIGKKT 114 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKGK S +A+ ALV+LG+ +++ Sbjct: 115 ASRIILELKGKL--------------------SFSEEPIFNDAVEALVSLGFEKEKVIKI 154 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K ++ ++I+L+L+ +S Sbjct: 155 VKELSQKTNSL---EELIKLSLQKLS 177 >gi|325832047|ref|ZP_08165144.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1] gi|325486368|gb|EGC88820.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1] Length = 205 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G I+V GV Y + +LS L + G + +R D + L Sbjct: 1 MIAFLKGTLAGKTATTAYIEVNGVGYAVGMSQASLSKLPEAGAPVEVHTFLQVRDDALAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L V GVG +VA+ LS + LV ++ Q+ + +IPG+ K Sbjct: 61 YGFLALEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG + ++ + A + + AL+++G+ ++A A Sbjct: 121 ASRIILELKG-------SFDEGLASLFDGAAPAAASAANLAGTREALLSMGFTSEEADVA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 LK A + +++ AL+ + Sbjct: 174 ----LKGAPEGASEGVLLQYALKRLGS 196 >gi|166363769|ref|YP_001656042.1| Holliday junction DNA helicase RuvA [Microcystis aeruginosa NIES-843] gi|189045757|sp|B0JRV0|RUVA_MICAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166086142|dbj|BAG00850.1| holliday junction DNA helicase [Microcystis aeruginosa NIES-843] Length = 209 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 15/214 (7%) Query: 1 MIGKIKGNIEG--LYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI ++G + +++DV + Y I P R +G D C +F +R Sbjct: 1 MINYLRGQAIEVIKTPNNRLILILDVNQIGYEIQIPSRLALDIGNNNNDSCQIFTHLLLR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 ++Q L+GF + +R+ F L SV GVGA++A+ ++ + ELV +I+ N+K++++ P Sbjct: 61 EEQPLLYGFGTAPERELFRQLLSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ +K A RI ELK K + + + + I + + L+ LGY Q Sbjct: 121 GVGLKTAERIALELKTKLAAWRQLREATTTITA-----ILPAAAILEDVQMTLLALGYSQ 175 Query: 175 DQATTAVVSVLKKEK---NIADDSQIIRLALRAI 205 ++ A+ +VL ++ I+ A+ + Sbjct: 176 EEIDRAM-AVLSQDALFSKNTQPEDWIKGAINWL 208 >gi|260893478|ref|YP_003239575.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4] gi|260865619|gb|ACX52725.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4] Length = 193 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G++ +I V G+ ++ P+ L G L+ +R+D+ + Sbjct: 1 MLAFLRGSVLEKERGRAVILVGGMGLEVFLPLSLYERLPAKGGEVELYTCLLLREDRPEI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R +F+ L + GVG + A+ +LS + EL E+I ++ + + +PG+ K Sbjct: 61 YGFGDREERDFFLRLLKIGGVGPKTALALLSCFSVEELREAIRSEDLEKLTVVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK ++ + V E A L+NLGY + +A A Sbjct: 121 ARRLLLELK----------EEKGAPVEGEAAADAVAA---------LINLGYRRREAEEA 161 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K + ++++L+L + Sbjct: 162 VREA--KARGAQGIEELLKLSLAYL 184 >gi|148242421|ref|YP_001227578.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. RCC307] gi|166231453|sp|A5GTL6|RUVA_SYNR3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147850731|emb|CAK28225.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. RCC307] Length = 208 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 12/211 (5%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG + G I +++ ++L+ V Y + + T+ R+D Sbjct: 1 MIGWLHGTIGDRWQEGNRCWLLLICGPVGYELQVSESLWRG-TALESPTTVHTHLQQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 +L+GF + DR F LL SV GVG +VA+G++S + A L++++ ++ KV+ Q PG+ Sbjct: 60 GQQLYGFETKADRNLFRLLISVNGVGPQVALGLISGLGAVSLLQAMAAEDVKVLCQAPGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ E + + ++ + + + + L LGYG ++ Sbjct: 120 GKRTAERLSLEWRSRLQ------ERWQQQGGSTPLRLVEPVAESRELRATLEALGYGPEE 173 Query: 177 ATTAVVSVLKKEKNIA-DDSQIIRLALRAIS 206 + AV + + + +R L +S Sbjct: 174 VSAAVAQAGSQGLDPEQPMEEWLRHCLAWLS 204 >gi|68171608|ref|ZP_00544978.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88658340|ref|YP_507141.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str. Arkansas] gi|123763770|sp|Q2GHE2|RUVA_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67998975|gb|EAM85656.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88599797|gb|ABD45266.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str. Arkansas] Length = 190 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 107/207 (51%), Gaps = 19/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR- 59 MIG + G IE +Y +Y++++V V YIIY + L K G+ L++ET++ +D + Sbjct: 1 MIGSLTGIIEEIYNNYIILNVGNVGYIIYVSHKVLQS-CKTGNNIKLYIETYVNRDNLTQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL ++ + +L ++ G+ + A+ +LS+++ ++ +++ N + GI K Sbjct: 60 LYGFLDKQEQDYMRMLVTINGINHKTAISILSKLSPEQIFSAVVSNNKNAF-RGNGIGEK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI TEL+ K + + ++++AL++LGY + +A Sbjct: 119 LAGRITTELQYKISKMPIEETLIIK---------------EDDSLAALISLGYDKLKAFN 163 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + +IIR AL+ +S Sbjct: 164 AIQEIKANFPDD-SIQEIIRKALQKLS 189 >gi|58698305|ref|ZP_00373222.1| Holliday junction DNA helicase RuvA, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630965|ref|YP_002727756.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi] gi|254767402|sp|C0R4X3|RUVA_WOLWR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58535178|gb|EAL59260.1| Holliday junction DNA helicase RuvA, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225592946|gb|ACN95965.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi] Length = 190 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 115/209 (55%), Gaps = 22/209 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MIG + G ++ + D+++++V V Y++Y +TLS IG L +ET+ R++ Sbjct: 1 MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLSA-CAIGSRIKLLIETYANNRENTT 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF+S+ ++Q LL V GV + AM +LS++T +L +I+ ++ + ++ G+ + Sbjct: 60 QLYGFISEEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKVTL-KMSGLGL 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L + + + +A+SAL+NLGY + +A Sbjct: 119 KLINRIITELSGKVSKL--------------EINNNNFHPINEDALSALINLGYEKMKAY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAISC 207 + KK + D IIR+AL+ +S Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELST 189 >gi|61657364|emb|CAI44281.1| holliday junction DNA helicase [Thermotoga naphthophila RKU-10] Length = 191 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + K G+ C L ++ QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK S +DM ++ ALV+LGY + QA Sbjct: 123 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALVSLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189 >gi|281412224|ref|YP_003346303.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila RKU-10] gi|281373327|gb|ADA66889.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila RKU-10] Length = 188 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + K G+ C L ++ QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK S +DM ++ ALV+LGY + QA Sbjct: 120 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALVSLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186 >gi|224372976|ref|YP_002607348.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH] gi|254767379|sp|B9L9P0|RUVA_NAUPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|223589102|gb|ACM92838.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH] Length = 184 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 26/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++GNI +L+DV V Y + + T S + G ++ +++++ L Sbjct: 1 MIAALRGNIFEKDGGKILLDVNNVIYELNVSMITFSSVNDKG---LFYITEIIKENEYTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F L + GVG +VA+ + S T ++ I + + +IPGI K Sbjct: 58 YGFADKNEKKLFDSLIKLNGVGPKVALAICSTYTPQTFMDIIANHDINALKKIPGIGPKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ E+ + + A+SAL +LG+ ++ A Sbjct: 118 AKRILMEM------------------GEFEVVFEEQNPVFNQALSALESLGFNKNDIVKA 159 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + I+LAL+ +S Sbjct: 160 LNGIKSDN-----LEETIKLALKKLS 180 >gi|313473093|ref|ZP_07813577.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153] gi|313448796|gb|EEQ67671.2| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153] Length = 195 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 16/200 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++ +DV G + IY + S G ++VE +R + I L Sbjct: 1 MYEYLEGTVTIITPSFIALDVGGQGFKIY-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + AM +++ ++ L ++I + + PG+ K Sbjct: 58 YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S V+QD+ + QA +A+ AL LGY + + Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166 Query: 181 VVSVLKKEKNIADDSQIIRL 200 + K + AD + I+ Sbjct: 167 KPKLEKSTYDTAD--EYIKE 184 >gi|257790728|ref|YP_003181334.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243] gi|257474625|gb|ACV54945.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243] Length = 197 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + I+V G+ Y + LS L + G + +R D + L Sbjct: 1 MIAFLKGVLAAKTATTAYIEVNGIGYAVGMSQAGLSKLPEAGAAVEVHTFLQVRDDGLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F L V GVG +VA+ LS + LV ++ Q+ + +IPG+ K Sbjct: 61 FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG + ++ + E A + + + AL+++G+ ++A A Sbjct: 121 ASRIILELKG-------SFDEGLAGLFDEAAPVVASAANLAGTREALLSMGFTSEEADVA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 LK A +S +++ AL+ + Sbjct: 174 ----LKGAPEGAAESVLLQYALKRLGT 196 >gi|300787173|ref|YP_003767464.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei U32] gi|299796687|gb|ADJ47062.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei U32] Length = 198 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++V GV + + TL+ L + G+ L +R+D + L Sbjct: 1 MISSVRGEVLIVGLDHVVVEVGGVGFAVQATPATLATL-RRGEEARLHTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF R+ F LLQ+V G+G R+A+ L+ + +L +++ N V+ +PGI K Sbjct: 60 FGFADADARELFGLLQTVSGIGPRLALATLAVLDPGKLRAALVEGNITVLTSVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL+ K +L+ + + + + + AL LG+ QA A Sbjct: 120 AERLTLELRDKVTALAG---------TGDVPAVTAPGALRAEVVEALAGLGFPAKQAEQA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL + + + ++R AL + Sbjct: 171 VDKVLA-DGDGHTTAGVLRAALATL 194 >gi|325474386|gb|EGC77574.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema denticola F0402] Length = 201 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 104/211 (49%), Gaps = 15/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + G D V ++ G+ + I+ L LG +G ++ + R+DQ+RL Sbjct: 1 MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V+GVG R A+ ++S + + L +++ + + + PG+ K Sbjct: 61 FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNFSSLEKALEEGDLDTLQKAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKGK +L+ V + + V+ E + ++AL +G+ + Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCE----------YEDIVTALTEMGFERKSVIFQ 170 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAIS 206 V + ++ K + ++ ++ R ++ A+S Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201 >gi|170077885|ref|YP_001734523.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002] gi|229560135|sp|B1XL12|RUVA_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169885554|gb|ACA99267.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002] Length = 209 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 15/214 (7%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54 M +KG ++ + +++++V+ + Y I P R L IG +FV + R Sbjct: 1 MFSYLKGEAIAIHRNLQGRFFLILEVRDIGYEIQVPGRLAQELAAAIGQPQHIFVHSQQR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +D L+GF S R F L SV G+GA+ A+ +L +T ELV++I+ + + +A+ P Sbjct: 61 EDGTYLYGFASAAARDLFRQLISVSGIGAQGAIALLDTLTLPELVQAIVTADHRQLAKAP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI K A R+ EL+ K + A + L+ LGY + Sbjct: 121 GIGKKTAERLALELRSKLSQWRDQFSLPDTAAQPNAA-------VHEDLELTLLALGYQE 173 Query: 175 DQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206 + A+ ++ + + +D + IR A+ +S Sbjct: 174 TEIRGAIATLSQDSILLQNDNADEWIRRAITLLS 207 >gi|302527851|ref|ZP_07280193.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4] gi|302436746|gb|EFL08562.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4] Length = 198 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++V GV + TL+ L + G+ L +R+D + L Sbjct: 1 MISSVRGEVLSVGLDHVVVEVGGVGLAVQATPATLATL-RRGEQTRLHTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + R+ F LLQ+V G+G R+A+ L+ + +L +++ N V+ Q+PGI K Sbjct: 60 FGFAEEDARELFGLLQTVSGIGPRLALATLAVLEPDKLRAALVEGNITVLTQVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL+ K +L + + + + + AL LG+ QA A Sbjct: 120 AERLSLELRDKVTALGGA---------SDAPVVTAPGALRGEVVEALAGLGFPAKQAEQA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL E + S ++R AL A+ Sbjct: 171 VDKVL-SEGDGHTTSSVLRAALAAL 194 >gi|152966998|ref|YP_001362782.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans SRS30216] gi|151361515|gb|ABS04518.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans SRS30216] Length = 209 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 13/210 (6%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + + D +++V GV ++ TL+ L ++G L +R+D + LF Sbjct: 6 IASVRGQVLAVRLDSAVVEVGGVGMLVLAAPATLAGL-RVGQEALLHTTLVVREDSLTLF 64 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +++ F ++Q+ GVG R+A+ +L+ + ++ ++ + ++PGI K A Sbjct: 65 GFADADEKEVFEIVQTASGVGPRMALAMLAVHRPDGIRAAVAAEDHAALVRVPGIGKKTA 124 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI EL + S A + + + + ALV LGY A V Sbjct: 125 QRICLELGDRLGPPSG-------TAAPVAAPLSAGDARREQVVEALVGLGYPLKHAGDVV 177 Query: 182 VSVLKKEKNIA-----DDSQIIRLALRAIS 206 V+ + D + +R ALR +S Sbjct: 178 DVVVGATPDAGAADDLDVAATLRAALRHLS 207 >gi|309388950|gb|ADO76830.1| Holliday junction DNA helicase RuvA [Halanaerobium praevalens DSM 2228] Length = 198 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + V++ + G+ Y + T ++G +F T++R+D ++L Sbjct: 1 MIGYLEGEVIEAEFNKVILGINGIGYELELAGFT--KQPRLGQKLEVFTYTYVREDVLKL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F +Q F +L +V G+G + +L+ + A + +I+ +N + +I GI K Sbjct: 59 FAFPEKSYKQLFEILITVNGIGPSAGLNILNTMPAARFISAILQKNEVTLKEISGIGPKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + N + + + AL LGY + A Sbjct: 119 AQRLILELQSKLEDFAYLQ-------NNNDSEPVVTEEDRQDIVDALTVLGYKISEINKA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ + S+ I+L L + Sbjct: 172 LREI--EFESETNVSEKIKLTLSQL 194 >gi|238855608|ref|ZP_04645909.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3] gi|260665332|ref|ZP_05866180.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii SJ-7A-US] gi|282933018|ref|ZP_06338412.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] gi|238831752|gb|EEQ24088.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3] gi|260560836|gb|EEX26812.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii SJ-7A-US] gi|281302872|gb|EFA95080.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] Length = 193 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 16/200 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++ +DV G + IY + S G ++VE +R + I L Sbjct: 1 MYEYLEGTVTIITPSFIALDVGGQGFKIY-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + AM +++ ++ L ++I + + PG+ K Sbjct: 58 YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S V+QD+ + QA +A+ AL LGY + + Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADTSQA--------LSDALLALSALGYTKKEVEKV 166 Query: 181 VVSVLKKEKNIADDSQIIRL 200 + K + AD + I+ Sbjct: 167 KPKLEKSTYDTAD--EYIKE 184 >gi|293384502|ref|ZP_06630374.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] gi|291078181|gb|EFE15545.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] Length = 163 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 2/145 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMS 144 A +++ +LKGK L S Sbjct: 139 TAQQMILDLKGKLGELESSEAAGGG 163 >gi|293389007|ref|ZP_06633490.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] gi|291081647|gb|EFE18610.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] Length = 163 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 2/145 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + ++ S L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMS 144 A +++ +LKGK L S Sbjct: 139 TAQQMILDLKGKLGELESSEAAGAG 163 >gi|317051309|ref|YP_004112425.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5] gi|316946393|gb|ADU65869.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5] Length = 202 Score = 177 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI + G + L +D ++ GV Y + P + L K+ ++ +++D I Sbjct: 1 MISLVSGTVHSLTQDRATILTSGGVGYELSIPASLATSL-KVDQTVSIQTWMGVKEDAIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S ++ F+LL V G+GA++A+ + + +L +I + + I +IPG+ K Sbjct: 60 LYGFSSSEEKALFLLLMKVSGIGAKIALAAVGTLNTQQLGNAIAMGDIATIQRIPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A +I ELK K ++ + PS +A+ L+ LG +++A + Sbjct: 120 VAEKIALELKDKVTPAAATSSAPQAFTGT----TSGTPSVFADAVQGLIALGLRREEADS 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + ++ IIR LR Sbjct: 176 --AARRAMAAGADSETSIIREVLRQ 198 >gi|194335574|ref|YP_002017368.1| Holliday junction DNA helicase RuvA [Pelodictyon phaeoclathratiforme BU-1] gi|229560112|sp|B4SCR7|RUVA_PELPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194308051|gb|ACF42751.1| Holliday junction DNA helicase RuvA [Pelodictyon phaeoclathratiforme BU-1] Length = 200 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + + V+++V G+ Y T L + G LF +R+D ++L Sbjct: 1 MFAYFRGKLTSVLPEEVVVEVSGIAYQFLISAATHRQLPEQGSEVFLFSHLVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LL GVG ++A+ +LS ++ ++ ++I+ + + I G+ K Sbjct: 61 YGFSGEEERQLFRLLLLTTGVGPKLALALLSGLSVQDIHDAILTNTPERLYGITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + LS V S +A++ALV LG+ + A Sbjct: 121 AARIILELRDKVLKLSPVSALASPA-------RLSSTLLRDDAVNALVTLGFSRIIVQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 VV++L++ + ++I+ AL Sbjct: 174 VVAILEQNPGLT-VEEVIKAAL 194 >gi|118475489|ref|YP_891982.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp. fetus 82-40] gi|166230534|sp|A0RP49|RUVA_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118414715|gb|ABK83135.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp. fetus 82-40] Length = 184 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I V I GV Y I + T + L K G+ LF+ +R+D Sbjct: 1 MIKAIEGIITKKEPTNVWIKTLSGVSYGISISLFTSASLQK-GEKVELFITQVIREDANL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ + +++ F +L V G+GA AM V S + E +++ + V+ ++PGI K Sbjct: 60 LYGFIKESEQRIFEMLLKVNGIGASTAMAVCSSLGPDEFSIAVMNGDDAVLRRVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++ +L + I SMPS+ A AL +LG+ +D+ + Sbjct: 120 TARTLIAQLSD-----------------AKFGEINSMPSYQNEAFMALESLGFKRDRISK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + E + D + +I+ AL+ ++ Sbjct: 163 VLN-----ECSSNDTASLIKEALKKLA 184 >gi|300768015|ref|ZP_07077921.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494364|gb|EFK29526.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 220 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 G + + YV+I+V G+ Y + +G +++ + ++ + LF Sbjct: 19 YEYFLGQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPT--AVKMYIHQAVSENGMSLF 76 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF ++ F L V G+G + A+ +L+ L+++I +N+ + PG+ K A Sbjct: 77 GFFDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKTA 136 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +I+ +LKGK L+ V + A ++ + GY + Sbjct: 137 QQIVLDLKGKLNDLNVDVTGQTALDVDAPAVDGALADALAALEAL----GYSKADVKKVT 192 Query: 182 VSVLK-KEKNIADDSQIIRLALRAI 205 + + AD + ++ LR + Sbjct: 193 KKLETFSQTQGADTNTLLSEGLRLL 217 >gi|154174555|ref|YP_001408214.1| Holliday junction DNA helicase RuvA [Campylobacter curvus 525.92] gi|166230533|sp|A7GYC2|RUVA_CAMC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|112802462|gb|EAT99806.1| holliday junction DNA helicase RuvA [Campylobacter curvus 525.92] Length = 184 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I +V++ GV Y ++ + + L K G+ L +R+D Sbjct: 1 MIRAIEGIITKKEPAFVVLKTAGGVSYGLFISLFCSAKLSK-GEKVELNTTQIIREDANL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F +L + G+GA AM + S ++ ++I ++ +PGI K Sbjct: 60 LYGFLDTNEQKMFEMLIKLNGIGASTAMAICSSLSPNAFSNAVINGDADTFKSVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + S+P + A+ AL LG+ +++ Sbjct: 120 TARRIIAELSD-----------------AKLISDESVPGYQNEALLALEALGFKREK--- 159 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 +V +L K+ S++++ AL+ ++ Sbjct: 160 -IVKILPDLKS-TSTSELVKEALKKLA 184 >gi|269123417|ref|YP_003305994.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis DSM 12112] gi|268314743|gb|ACZ01117.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis DSM 12112] Length = 200 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + +YV+ID+ GV Y IY I+T L IG+ L++ T +++D I Sbjct: 1 MYEYFEGILSVKNLNYVVIDINGVGYKIYTSIKTYDKLNSIGEKERLYIHTIVKEDDISF 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++L+R F+ ++ G+GA+ A+ +LS EL +N K +A++PGI MK Sbjct: 61 FGFKNELERSIFLECIAINGIGAKKAIAILSNFEFEELAAIASSKNFKELAKVPGIGMKK 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L K L I + + N AL +LGY + Sbjct: 121 AEKIMVDLSDKLEGLKITNSSSS-------QDIVELYNKKENLRLALESLGYEKVNINNI 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + KE N+ ++I++AL Sbjct: 174 IEDKYIKELNM---QELIKMAL 192 >gi|256371996|ref|YP_003109820.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans DSM 10331] gi|256008580|gb|ACU54147.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans DSM 10331] Length = 189 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + V+IDV GV Y ++ + L + D C L++ T +R D I L Sbjct: 1 MIGWLHGRVASAGRSPVVIDVAGVGYEVHVTAP-WATLLRRDDECELWIRTIVRADAIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L V GVG ++A+G+L I EL +I ++ + I G+ K Sbjct: 60 YGFASQAEREAFDALIGVSGVGPQLALGILGGIEGDELWTAIATEDLGRLTAIAGVGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL A L+ V MS +AL LG+ + Sbjct: 120 AKRVVLELAPTAKRLAPVTGVPMSQEVSAL-------------RAALGELGFRPGE---- 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V+++ D +R AL+ ++ Sbjct: 163 IDAVVRRCPGDLDFEAQVRWALKELA 188 >gi|254253224|ref|ZP_04946542.1| DNA recombination protein [Burkholderia dolosa AUO158] gi|124895833|gb|EAY69713.1| DNA recombination protein [Burkholderia dolosa AUO158] Length = 164 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 15/177 (8%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P+ T L + G+ L + +R+D L+GFL+ +R F L + G+GAR+A+ V Sbjct: 1 MPMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAV 60 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 LS ++ EL +++ +Q++ + ++PGI K A R L ++ + Sbjct: 61 LSGMSVQELAQAVTMQDAARLTRLPGIGKKTAER-----------LLLELKGKLGADLGA 109 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A S A + ++AL+ LGY + +A A+ +V S+ I+LAL+A+S Sbjct: 110 LAGAASPSDHAADILNALLALGYSEKEALAAIKNV----PAGTGVSEGIKLALKALS 162 >gi|328947934|ref|YP_004365271.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema succinifaciens DSM 2489] gi|328448258|gb|AEB13974.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema succinifaciens DSM 2489] Length = 206 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 10/192 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + G + + I+ G+ + + P +L + +G +FV ++ + L Sbjct: 1 MFNSLTGVVTGKFPQKLFIETNGIEWDVTVPDTSLEKIPSVGIKGRVFVWMQHTENLMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L V G+G + A+ ++S I+ L E + + + ++PG+ K Sbjct: 61 FGFATENERALFFDLLKVDGIGPKGAVKIMSNISVAALAEILDSGDVDALKKVPGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ LKGK N++ + + + I ALV++GY + +A A Sbjct: 121 AGKIILSLKGKL----------SFVSNEKISSAVRKNNAYSDVIDALVSMGYDRAKAEDA 170 Query: 181 VVSVLKKEKNIA 192 V + + ++ Sbjct: 171 VSKISSELQSDE 182 >gi|148239406|ref|YP_001224793.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. WH 7803] gi|166231452|sp|A5GKN1|RUVA_SYNPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147847945|emb|CAK23496.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. WH 7803] Length = 215 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 20/219 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQG----------VCYIIYCPIRTLSCLGKIGDFCTLFVE 50 MIG ++G +E G V Y + R + G G CTL+V Sbjct: 1 MIGWLQGERIQSWEQ------GGRRGVVVACGGVGYEVQLTSRDQNGQG-TGSACTLWVH 53 Query: 51 THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110 R D LFGF +R F L V GVG ++A+ +L ELV +I+ + K + Sbjct: 54 QVQRDDGSTLFGFCDQQERDLFRTLIGVNGVGPQMALALLDCCRVHELVAAIVDGDLKRL 113 Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS-ALVN 169 Q G+ + A RI EL+ + + + + + +S V++ + + + L Sbjct: 114 TQAQGVGKRTAERIAVELRDRLGNWAPLQEPSLSLVDRSDVKAIPLGEPCLRDLQITLET 173 Query: 170 LGYGQDQATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206 LGY + A+ +V D +R +L+ +S Sbjct: 174 LGYEDLEIRRAMRAVASGPDVPAEDDGDAWLRASLKWLS 212 >gi|229820484|ref|YP_002882010.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM 12333] gi|259495635|sp|C5C5Q7|RUVA_BEUC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229566397|gb|ACQ80248.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM 12333] Length = 200 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D V++ V GV + TL+ L ++ C L +R+D + L Sbjct: 1 MIALVQGRVAAIGLDAVVVVVGGVGMRVLATPATLAGL-RVEADCELHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L+Q+V GVG R+A+ +L+ T L ++ ++ + ++PGI K Sbjct: 60 FGFADADERDVFELVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDLAALVRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL + V+ + + ALV LG+ QA A Sbjct: 120 ASRIVLELGDRLGPAQGAAPAAPVAVDDG-----------ADVVDALVGLGWPVRQAQDA 168 Query: 181 VVSVLKKEKNIA-DDSQIIRLALRAIS 206 V VL+ A D + ++R ALR+++ Sbjct: 169 VRGVLEDADGTAPDAAGLLRAALRSLA 195 >gi|159037423|ref|YP_001536676.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205] gi|189045766|sp|A8LXW8|RUVA_SALAI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157916258|gb|ABV97685.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205] Length = 200 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +I+V GV + C T++ L ++G L +R+D + L Sbjct: 1 MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D + F LLQ+ GVG R+A VL+ T + +I ++ + ++PGI K Sbjct: 60 YGFADDNAKALFELLQTASGVGPRLAQAVLAVHTPETVRAAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ ALV LG+ QA A Sbjct: 120 AERLVLELRDRIGPV---------PVGGDGAAGVTTGAWPEQVRQALVGLGWTAGQAEQA 170 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 V +V + + + ++R A+R + Sbjct: 171 VAAVAETVDGEVPPVPVLLRQAIRLL 196 >gi|159903243|ref|YP_001550587.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9211] gi|229560117|sp|A9B9X1|RUVA_PROM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|159888419|gb|ABX08633.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9211] Length = 223 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG +KG + + ++ GV Y I R L L ++++ +++D Sbjct: 1 MIGWLKGEKIDHWNNGNRAGFVLSCNGVGYEIQLSRRNLIALNNYN-VLSIWIHQVLKED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF+ +R F L +V GVG ++AM +L + +L+ ++ + + + G+ Sbjct: 60 GSNLFGFIEKSERDLFRKLITVSGVGPQLAMSLLDDNSYEQLIANVQNKEVTKLTRSSGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R++ EL+ K + + ++ SAL NL Y + Sbjct: 120 GKRTAERLILELQNKLSDFDLNNEFSPPTKLRPESAEDLNEELLTEIKSALRNLDYSDFE 179 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV +V + A + +L L++++ Sbjct: 180 ILEAVNTVTSNYLDDAASANERKLLLKSLN 209 >gi|170781148|ref|YP_001709480.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis subsp. sepedonicus] gi|189045747|sp|B0REB9|RUVA_CLAMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169155716|emb|CAQ00837.1| holliday junction DNA helicase RuvA [Clavibacter michiganensis subsp. sepedonicus] Length = 214 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +L++V GV Y + R L + G T+ +R+D + L Sbjct: 1 MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL-RHGSEATVLTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL V GVG + A+ VL + + +++ ++ ++ GI K Sbjct: 60 FGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT- 179 A I+ +L GK + S + + ++AL+ LG+ + A T Sbjct: 120 AKLIVLQLAGKLFVTQPRTRSASSAA----------STVTADVVTALIGLGWSERVARTA 169 Query: 180 --AVVSVLKKEKNIADDSQIIRLALRAI 205 + ++ AD +++R+AL + Sbjct: 170 VDDAAAAAAEQGLPADMPRLLRVALGML 197 >gi|229553780|ref|ZP_04442505.1| crossover junction endoribonuclease subunit A [Lactobacillus rhamnosus LMS2-1] gi|229312854|gb|EEN78827.1| crossover junction endoribonuclease subunit A [Lactobacillus rhamnosus LMS2-1] Length = 212 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I+ + Y++IDV G+ + + + G ++V+ +R++ L Sbjct: 15 MYEYFEGTIQAVTPAYIVIDVNGIGFRLLV-ANPYDF--EAGKQTRIYVQLIIRENDQTL 71 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D++ F L SV G+G + A+ +L+ +++ L +I + K + + PGI K Sbjct: 72 YGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 131 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +LKGK + + + + A + A+ A+ GY Q A Sbjct: 132 AAQIILDLKGKITTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQ----RA 181 Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206 V + K + +R LR +S Sbjct: 182 VDGITDALKAFDATTTDAYLREGLRLLS 209 >gi|154148334|ref|YP_001406161.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC BAA-381] gi|166230535|sp|A7I0X0|RUVA_CAMHC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|153804343|gb|ABS51350.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC BAA-381] Length = 184 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G I + ++ V GV Y I + + + K G+ L +R+D Sbjct: 1 MIVAVEGIITKKEPTFCVLKTVTGVSYGISISLGCSARINK-GEKIELLTAQILREDADL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL + +++ F +L + G+GA AM V S +++ + +II ++ + +PGI K Sbjct: 60 LYGFLDEKEKRMFEMLIKLNGIGANTAMAVCSSLSSDNFLRAIINGDTATLTTVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL I L++ +Q + I ISAL NLG+ +D+ Sbjct: 120 TARRIIAELSDAKIELANDGEQ-----------------YKIETISALENLGFKRDKINK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 ++ + + +I+ AL+ ++ Sbjct: 163 ILL-----NCKSTNTADLIKEALKKLA 184 >gi|58584509|ref|YP_198082.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497985|sp|Q5GT34|RUVA_WOLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58418825|gb|AAW70840.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 196 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVET--HMRQDQI 58 MIG + G ++ +Y D+++++V V YIIY + L + IG L +ET + R++ Sbjct: 1 MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKAL-NVCYIGSKIKLLIETCANNRENTT 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF++ ++ LL V GV + AM +LS++T +L +I+ ++ + +I G+ Sbjct: 60 QLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGP 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L + + + +A+SAL+NLGY + + Sbjct: 119 KLINRIITELSGKVSKL--------------ETNNNNFYPINEDAVSALINLGYEKTK-- 162 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 V +KK K D IIR AL+ +S Sbjct: 163 --VYDTIKKYKPNLDTKDIIRTALKELS 188 >gi|291533989|emb|CBL07102.1| Holliday junction DNA helicase subunit RuvA [Megamonas hypermegale ART12/1] Length = 161 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 79/143 (55%), Gaps = 1/143 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + D+ IDV GV Y ++ T + L K+ + LF +R+D + L Sbjct: 1 MIGYLQGKVTYIASDFCFIDVHGVGYRVFISTSTRAQL-KMNEEIKLFTYLSVREDAMLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ L+ F L SV +G + +G+LS +++ +L+ +I + ++ PGI K Sbjct: 60 YGFINQLEYDVFCKLISVSKIGPKAGLGLLSSLSSEKLIWAIQNKQVSLLTNAPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDM 143 A RI+ ELK K L+ + ++ Sbjct: 120 AERIVLELKDKLTELNLSISDEV 142 >gi|152992417|ref|YP_001358138.1| Holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1] gi|166231450|sp|A6Q8H2|RUVA_SULNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151424278|dbj|BAF71781.1| holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1] Length = 185 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 23/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G +E ++ ++V G+ Y I I T + + + LF+ +R+D L Sbjct: 1 MIVGMEGIVERRDPTFIHLNVNGIIYEIQVSINTSNAIQE--KRVKLFITQVIREDADLL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +++ F + + GVG +V + + S T + + ++ ++ ++PGI K Sbjct: 59 FGFMDTNEKKMFDTVLKINGVGPKVGLAICSTFTPETFAKVVASKDVSMLKRVPGIGPKA 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL + + A+ AL +LG+ +D A Sbjct: 119 ASRILVELADFIV---------------DGNAAEGSSGALGEAVMALESLGFKKDAIQKA 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D S +++ L+ + Sbjct: 164 LS------GCSGDTSTLVKEGLKKL 182 >gi|297624718|ref|YP_003706152.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM 17093] gi|297165898|gb|ADI15609.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM 17093] Length = 208 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 9/204 (4%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + +++ ++ P TL + ++G L ++++ + L+ Sbjct: 13 IAYLDGVVAEIRAGSLIVQAGAFGLEVFAPKPTL-MVCRVGSAVRLHTYFLVKEELLALY 71 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF F L V GVG ++A+ +LS + L +I+ ++ ++A PG+ K+A Sbjct: 72 GFHDRDLHTLFTHLIGVSGVGPKLALALLSSMQTPLLAGAILQGDAGLLASTPGVGKKMA 131 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI+ +LK K +++ A +A+ AL+ LGY + Q V Sbjct: 132 ERIILDLKNKLP-------EELLAPGARGKVTTLSSPAAEDAVGALLALGYRETQVKGVV 184 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + KE A +IR AL + Sbjct: 185 AQLALKEPE-AGAETLIRKALAQL 207 >gi|15639532|ref|NP_218982.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025771|ref|YP_001933543.1| Holliday junction DNA helicase, subunit A [Treponema pallidum subsp. pallidum SS14] gi|6094206|sp|O83554|RUVA_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560146|sp|B2S3D5|RUVA_TREPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3322833|gb|AAC65527.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018346|gb|ACD70964.1| Holliday junction DNA helicase, subunit A [Treponema pallidum subsp. pallidum SS14] gi|291059920|gb|ADD72655.1| Holliday junction DNA helicase RuvA [Treponema pallidum subsp. pallidum str. Chicago] Length = 227 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 9/215 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + ++V G+ + I + + G++G +F + R+D +RL Sbjct: 1 MFESISGILTLHERERLCVEVHGIEWEIAVSAYSSAAFGEVGSHVKVFTWLYHREDALRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V+G+G + A+ VLS I++ L ++ + + +IPGI K Sbjct: 61 FGFSNVQERTLFLSLTKVEGIGPKQALKVLSSISSQALCAALDTGDLCALQRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ LKG + Q D + + ++ALV +GY + Sbjct: 121 AQRMLLALKGTLALTDAASCAQSQTDDRAAHPSNLGCAPHAREIEDLVTALVQMGYDRKM 180 Query: 177 ATTAVVSVLKKEKNI-----ADDSQIIRLALRAIS 206 A + ++ +++ +++ A+ A+S Sbjct: 181 AAEVIAQESAALCSVGRSLYEEEATVLKRAILALS 215 >gi|284991600|ref|YP_003410154.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM 43160] gi|284064845|gb|ADB75783.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM 43160] Length = 212 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D +++V GV + C T++ L ++G+ L +R+D + L Sbjct: 1 MIASVNGRVAAVSPDGAVVEVGGVGLAVQCTPGTIARL-QVGESARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A VL+ E+ ++ + + K + Q+PGI K Sbjct: 60 YGFADDDERQLFELLQTANGVGPRLAQAVLAIHPPREVRRAVSMADVKALMQVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + S+ Q D + A P + SALV LG+ +A A Sbjct: 120 AERLILELRDRLGVTSTDTQLDGAAPAGLPAVTPVAP-WRDQLASALVGLGWTGKEADAA 178 Query: 181 VVSVLK------KEKNIADDSQIIRLALRAI 205 + + + + ++R ALR + Sbjct: 179 IGQLAPLADEQVTSTGSVEVAVLLRQALRLL 209 >gi|15642939|ref|NP_227980.1| Holliday junction DNA helicase RuvA [Thermotoga maritima MSB8] gi|4980659|gb|AAD35258.1|AE001701_11 Holliday junction DNA helicase [Thermotoga maritima MSB8] Length = 191 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + K G C L + QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK S +DM ++ ALV+LGY + QA Sbjct: 123 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALVSLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKQVYREGMK---TSELIKEALKFLS 189 >gi|148272996|ref|YP_001222557.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166230540|sp|A5CS07|RUVA_CLAM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147830926|emb|CAN01870.1| Holliday junction DNA helicase subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 214 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +L++V GV Y + R L + G T+ +R+D + L Sbjct: 1 MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL-RNGSEATVLTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL V GVG + A+ VL + + +++ ++ ++ GI K Sbjct: 60 FGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT- 179 A I+ +L GK + ++ + + + ++AL+ LG+ + A T Sbjct: 120 AKLIVLQLAGKL----------FVTQPRARSATSAASTVTADVVTALIGLGWSERVARTA 169 Query: 180 --AVVSVLKKEKNIADDSQIIRLALRAI 205 + + AD +++R+AL + Sbjct: 170 VDDAAAAAADQGLPADMPRLLRVALGML 197 >gi|303233139|ref|ZP_07319812.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4] gi|302480724|gb|EFL43811.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4] Length = 208 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 MI ++ G + L +V+IDV GV Y + + L + G L ++++ + Sbjct: 1 MIVQLSGTLVELTSSHVIIDVAGVGYELGISASCAAHLPAEKGSPLVLLTRMIVKENALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F + S+ GVG ++A+ +LS T ++L+ Q+ ++Q+ G+ K Sbjct: 61 LYGFADAYERLMFDTIISISGVGPKLALAILSLYTPSQLLTIAQTQDVAAMSQVSGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ EL + + + + A + +A +AL ++G+ + Sbjct: 121 KAQRLLLELADMCARTGELQGCVSAAAPSAKAASVEQRGDPMFDARAALASMGFTAVEIE 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + ++ ALR+++ Sbjct: 181 RALEGC---STDNQTAESLVAQALRSLA 205 >gi|6685946|sp|Q9WY12|RUVA_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 188 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + K G C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK S +DM ++ ALV+LGY + QA Sbjct: 120 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALVSLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKQVYREGMK---TSELIKEALKFLS 186 >gi|154249486|ref|YP_001410311.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum Rt17-B1] gi|171769439|sp|A7HL71|RUVA_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154153422|gb|ABS60654.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum Rt17-B1] Length = 188 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +G E +L+ + GV + I + S + GD ++ + + Q+ + + Sbjct: 1 MIEIIEGIYKGRSEGKILVSINGVVFGIITDAESFSEFNE-GDKILVYTKLIVSQEDMTI 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + ++ F L V +G + A+ +LS T L +I + + ++ IPGI K Sbjct: 60 YGFDSKVKKETFEKLIKVSKLGPKTAIKILSSTTVDFLSNAIATGDVEKLSSIPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK + + + + AI ALV+LGY + QA A Sbjct: 120 AERMITELKD-------------------EFEVVEVNEEMLEAIEALVSLGYSKTQARNA 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VLK+ NI++ S+II+ AL+ ++ Sbjct: 161 VSKVLKESPNISNVSKIIKEALKILA 186 >gi|257456050|ref|ZP_05621253.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC 35580] gi|257446508|gb|EEV21548.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC 35580] Length = 202 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + G + V I+ G+ + I+ + G G ++ + R+DQ+RL Sbjct: 1 MFNSISGTLTGKTAESVYIETHGIEWEIFVSTLSADRFGAAGSTVRVYTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R F+ L V+G+G + A+ +LS + + L ++ + + IPGI K Sbjct: 61 FGFLTPAERSLFLDLTKVEGIGPKQALKILSGLDSAALEAALEAGDVARLQSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG+ L + + + S + I AL+++GY + +A Sbjct: 121 AQKMVLALKGQLTGLQDSGRAETA-----------KKSEFEDIIIALIDMGYDRKRAAET 169 Query: 181 VVSVLKKE-----KNIADDSQIIRLALRAISC 207 V + + A + ++ R A+ +S Sbjct: 170 VDAAAQSMRTQGIDPTAKEEELFRTAIVNLSS 201 >gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198] gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198] Length = 184 Score = 175 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + L +L+DV V Y I+ + L + + +++ +R+D L Sbjct: 1 MIFALKGKVFALEPAKLLLDVHDVIYEIHISFGSAEEL-QGKEEALVYISQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +++Q F L + GVG +VA+ +LS +A E + I ++ + ++PG+ K Sbjct: 60 FGFVTPMEKQIFDTLIKINGVGPKVALAILSTFSAQEFMAVIERKDIAALQKVPGVGTKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM EL G + L A AL NLGY + A Sbjct: 120 AGKIMVELSGAYVEL---------------LPKKDHTEHFQQAEMALENLGYKRAAIQKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ ++ II+ AL+ + Sbjct: 165 LKSI-----KASNVQDIIKEALKLL 184 >gi|310778214|ref|YP_003966547.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus DSM 2926] gi|309747537|gb|ADO82199.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus DSM 2926] Length = 199 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 93/207 (44%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + +Y ++D+ G+ Y + ++T L +G+ L++ ++R+D +L Sbjct: 1 MFEYLKGELTLKKLEYAVVDINGIGYKVNISLKTYEKLV-LGEKTKLYIYNYIREDMFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF + +R F +L +V G+G +A+ +LS ++ + + ++ K++ ++P + +K Sbjct: 60 IGFAEEKERNLFEILINVNGIGVSLALAILSTFDVEDMRDIVSREDVKLLTKVPKLGIKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ++K K L S +K AL +LGY + Sbjct: 120 AQKLIVDVKDKLKGLQLEEGASGSTASK-------GIQIEEELYMALESLGYSKKDIEKL 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V ++ I+ L+ I Sbjct: 173 VTR--EEIMAYEGIEAAIKDVLKKIQS 197 >gi|315645785|ref|ZP_07898906.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453] gi|315278546|gb|EFU41860.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453] Length = 178 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 3/177 (1%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88 +CP K T++ H+R D I LFGF S +++ F L V G+G RVA+G Sbjct: 2 FCPNP--YAFAKTEGTVTVYTHHHVRDDAILLFGFPSREEQKLFRKLIEVSGIGPRVALG 59 Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 +L + +V +I +N + ++PGI K A R++ +LK K + Sbjct: 60 ILGGGSPDHVVSAIYQENVSFLVKLPGIGKKTAQRMILDLKDKLEGFGNATMM-TGLFAI 118 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 ++ + S A L LGY + + + + +++ AL+ + Sbjct: 119 QEPEAENDGSAWSEAREGLKALGYTDSELDKVWLKIKDSGASGESVDVLMKRALQQL 175 >gi|199598072|ref|ZP_03211495.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus rhamnosus HN001] gi|258507747|ref|YP_003170498.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] gi|258538937|ref|YP_003173436.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc 705] gi|84627155|gb|ABC59820.1| RuvA [Lactobacillus rhamnosus GG] gi|199590998|gb|EDY99081.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus rhamnosus HN001] gi|257147674|emb|CAR86647.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] gi|257150613|emb|CAR89585.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc 705] gi|259649095|dbj|BAI41257.1| holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] Length = 198 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I+ + Y++IDV G+ + + + G ++V+ +R++ L Sbjct: 1 MYEYFEGTIQAVTPAYIVIDVNGIGFRLLV-ANPYDF--EAGKQTRIYVQLIIRENDQTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D++ F L SV G+G + A+ +L+ +++ L +I + K + + PGI K Sbjct: 58 YGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +LKGK + + + + A + A+ A+ GY Q A Sbjct: 118 AAQIILDLKGKITTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQ----RA 167 Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206 V + K + +R LR +S Sbjct: 168 VDGITDALKAFDATTTDAYLREGLRLLS 195 >gi|241895534|ref|ZP_04782830.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides ATCC 33313] gi|241871112|gb|EER74863.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides ATCC 33313] Length = 196 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 3/154 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++ID+QGV Y + L T++VE +R + L Sbjct: 1 MYEYLKGTITAILPSYIVIDIQGVGYRVLVANPYAFSL---NSTMTVYVEQIIRDNDQNL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D+ F L +V G+G + A+ +L+ T L+ +I + + + PGI K Sbjct: 58 YGFLTKEDKDLFQKLLNVSGIGPKSALAILANSDHTGLINAITQNDIGFLTKFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 A +I+ +L+ K L+ + + V +E Sbjct: 118 AQQIVLDLQNKLSDLTLSIDDNNVSVQEEATDSE 151 >gi|61657382|emb|CAI44298.1| holliday junction DNA helicase [Thermotoga petrophila] Length = 191 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + + G+ C L + QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK S +DM ++ AL++LGY + QA Sbjct: 123 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALISLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189 >gi|290890055|ref|ZP_06553138.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429] gi|290480246|gb|EFD88887.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429] Length = 178 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 13/187 (6%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 IDV G+ + ++ P D T+F E +R +QI L+GF + +R F L +V Sbjct: 3 IDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNQISLYGFKTVKERNLFQKLLNV 59 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 G+G + A+ +++ L+ ++ K + + PGI K A +I+ +LKGK S Sbjct: 60 SGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDFSKN 119 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 + ++ + +A++ALV LG+ + + L + D+ I Sbjct: 120 I--------APMKNLLENSAELDDALAALVALGFSSKEVNK-INPKLASLGELTTDA-YI 169 Query: 199 RLALRAI 205 + L+ + Sbjct: 170 QKGLKLL 176 >gi|148269895|ref|YP_001244355.1| Holliday junction DNA helicase RuvA [Thermotoga petrophila RKU-1] gi|166231455|sp|A5IKQ6|RUVA_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147735439|gb|ABQ46779.1| Holliday junction DNA helicase subunit RuvA [Thermotoga petrophila RKU-1] Length = 188 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + + G+ C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK S +DM ++ AL++LGY + QA Sbjct: 120 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALISLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186 >gi|288574886|ref|ZP_06393243.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570627|gb|EFC92184.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio peptidovorans DSM 11002] Length = 202 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G + + ++DV G+ + + R S L +G +L L Sbjct: 1 MLAMVTGTVLDVTTQMAVVDVSGLGFEMQLT-RKASSLCSVGKEVSLHCHVQFSDAGPTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF L++ F+ L SV+G+G ++A+ VL +TA +V+++ + + +PGI K Sbjct: 60 FGFADGLEKAVFLRLLSVRGIGGKLALQVLQGMTAEAVVQAVSFGDPSGLTGVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+ K + + + + +P + AL +LG+ + ++ A Sbjct: 120 AERICFELQEKM-------SEGLPKGSTDNLREMVVPDSET-VMEALESLGFQRQSSSEA 171 Query: 181 VVSVLKKEK--NIADDSQIIRLALRAISC 207 + ++ KK + +I LALR ++ Sbjct: 172 LAAIAKKRGSVDGLGVEDLIMLALRELNS 200 >gi|282855630|ref|ZP_06264944.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter piscolens W5455] gi|282586560|gb|EFB91814.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter piscolens W5455] Length = 203 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + E +++ G + R ++G L+ + I L Sbjct: 1 MLASIRGKVVERSEFTAVVECNGFGVEVLLTRRAAER-CELGTQVFLYTLLQVGDAGIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R+ F L+ +GVG + A+ +L ++ E+V ++ + +++ +PGI K Sbjct: 60 YGFADDTERRTFKLMILTKGVGGKAAISILQYLSPAEIVAAVEQNDIRLLTSVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL + + + + A + + AL +LG+ + A A Sbjct: 120 AERICFELSDRIHK-----KGFIQLTGEFHGAPAGDRQAAASVLDALESLGFDRASAVRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SV+ ++ +S+ I LR + Sbjct: 175 YKSVVAEQGEALGESETIMSCLRIL 199 >gi|61657514|emb|CAI44425.1| holliday junction DNA helicase [Thermotoga sp. RQ2] Length = 191 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + + G+ C L + QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK S +DM ++ AL++LGY + QA Sbjct: 123 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALISLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189 >gi|42520918|ref|NP_966833.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Drosophila melanogaster] gi|99035955|ref|ZP_01315000.1| hypothetical protein Wendoof_01000161 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|81652227|sp|Q73G51|RUVA_WOLPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|42410659|gb|AAS14767.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Drosophila melanogaster] Length = 190 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 113/208 (54%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM--RQDQI 58 MIG + G ++ + D+++++V V Y++Y +TL+ IG L +ET+ R++ Sbjct: 1 MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLNA-CSIGSRVKLLIETYANNRENVA 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF+S ++Q LL V GV + AM +L ++T +L +I+ ++ + ++ G+ + Sbjct: 60 QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILGKLTPEQLFLAIMNEDKVAL-KMSGLGL 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L + + + +A+SAL+NLGY + +A Sbjct: 119 KLINRIITELSGKVSKL--------------EINNNNFHPINEDALSALINLGYEKMKAY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + KK + D IIR+AL+ +S Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELS 188 >gi|170288580|ref|YP_001738818.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2] gi|170176083|gb|ACB09135.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2] Length = 188 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + + G+ C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEVEEGGE-CFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK S +DM ++ AL++LGY + QA Sbjct: 120 TAERIVMELKD---EFESAGIKDM--------------RIYHESLEALISLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186 >gi|19704439|ref|NP_604001.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328207|ref|ZP_06870738.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22001978|sp|Q8REJ7|RUVA_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|19714701|gb|AAL95300.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154719|gb|EFG95505.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 194 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ L++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKLYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM------------DMLEDLVLALEGLGYNKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LEKI--DLNKFSSLEDAIKGILKNM 190 >gi|157164589|ref|YP_001466908.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826] gi|166230532|sp|A7ZDQ0|RUVA_CAMC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|112800289|gb|EAT97633.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826] Length = 184 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + ++ GV Y I+ + + L K G+ L + +R+D Sbjct: 1 MIKAIEGVVTKKEPAFAVLKTNSGVSYGIFISLFCSAKLSK-GEKVELAITQIIREDANL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F +L + G+GA AM V S +++ +II ++ +PGI K Sbjct: 60 LYGFLDANEQKMFEMLIKLNGIGASTAMAVCSSLSSQAFTNAIISGDADTFKSVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + S+PS+ A+ AL LG+ +++ Sbjct: 120 TARRIIAELSD-----------------TKLISDESVPSYQNEALLALEALGFKREKIVK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + + S +I+ AL+ + Sbjct: 163 IL-----PDCKSENTSDLIKEALKKL 183 >gi|268317861|ref|YP_003291580.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252] gi|262335395|gb|ACY49192.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252] Length = 200 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V++DV G+ Y + P T L ++G L ++R+D + L Sbjct: 1 MIAYVSGKLAVKKLTEVVVDVHGLGYRLLIPTSTYEVLPEVGAPVHLLTHYYVREDAVLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F +L V GVG R+A+ LS ++ ++ E++ + + + +IPG+ ++ Sbjct: 61 FGFATEAERALFEVLLGVSGVGPRLALAALSALSPAQIHEAVTTGDVQTLKRIPGVGQRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + L + + + A + Sbjct: 121 AERLIVELRDRLALLDLAELTPAGVDDVRAQARVDALAALEALGL-------PRAAAERS 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + VL++ I ++IRLALR Sbjct: 174 LRKVLREHPGIQSAEELIRLALRE 197 >gi|332638256|ref|ZP_08417119.1| Holliday junction DNA helicase RuvA [Weissella cibaria KACC 11862] Length = 199 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 3/150 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + +Y++++V G+ Y + + + + ++VE +R+++ L Sbjct: 1 MYEYLNGVITEVAPNYIVVEVGGIGYRVLV-ANPYAF--PMNELERVYVEQIIRENEQSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L +V G+G + A+ +L+ T LV++I + + + PGI K Sbjct: 58 YGFLTADEKLLFQKLLNVSGIGPKSALAILANADHTGLVQAIADNDITFLTKFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150 A +I+ +L+ K L +++ V E+ Sbjct: 118 AQQIVLDLQNKLGDLPFNNDIEINLVLPEK 147 >gi|187250915|ref|YP_001875397.1| Holliday junction resolvasome DNA binding subunit [Elusimicrobium minutum Pei191] gi|254766962|sp|B2KCD9|RUVA_ELUMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|186971075|gb|ACC98060.1| Holliday junction resolvasome, DNA binding subunit [Elusimicrobium minutum Pei191] Length = 202 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG I L ED VLI V GV Y + C +S L + + E+ D L Sbjct: 1 MIGYLKGQILSLSEDSVLILVNGVGYEVNCAPVAVSALEEGQETALYIAESISPYDGTVL 60 Query: 61 FGFLSDLDRQ-WFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGIS 117 +GFL+ D+Q W + S+ GA+ A+ L++ + + +I+ ++ K++ I G + Sbjct: 61 YGFLTKEDKQLWAIFKTSIPNTGAKKALEYLNKALRSVADFHNAIVKKDPKILTGIFGFT 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +++ L GK ++ + I F + AL LGY +A Sbjct: 121 AKTAEKLIHSLDGKM--------DAVTIAGVPKIKIEGEAPFMSEVMMALTALGYSPMEA 172 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + K IIR ALR + Sbjct: 173 RKAIDQLYKTGLANDSVENIIRAALRIL 200 >gi|149194599|ref|ZP_01871695.1| Holliday junction DNA helicase motor protein [Caminibacter mediatlanticus TB-2] gi|149135343|gb|EDM23823.1| Holliday junction DNA helicase motor protein [Caminibacter mediatlanticus TB-2] Length = 180 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 30/206 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I + +DV+ + Y + + T + ++ +++++ L Sbjct: 1 MIAALKGKIFEKDNGKIFLDVRDIIYELNVSLNTFAN----AKDGIFYITEIIKENEYSL 56 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +++ F L + GVG +VA+ + S T E + I Q+ + ++PGI K Sbjct: 57 YGFINKNEKKLFDNLIKLNGVGPKVALAICSTFTPDEFISIISSQDINSLKKVPGIGPKS 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ E+ I ++ A++AL NLG+ + A Sbjct: 117 AKRILMEMGD--------------------FEIENINPIISQAVTALENLGFKRADILKA 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + II+ AL+ +S Sbjct: 157 ISGL------DGSLEDIIKEALKRLS 176 >gi|283769122|ref|ZP_06342027.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219] gi|283104308|gb|EFC05686.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219] Length = 192 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 102/207 (49%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I + +DY++I+ QG+ +++Y P S +G+ +F + ++ +RL Sbjct: 1 MIAFIQGVITEIGDDYIVINHQGLGWLVYYPH---SLEVHVGEELQVFTHMSVSENDMRL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F+ L SV+G+G + AM +L + + E+I + + ++PGI K Sbjct: 58 YGFSSSKEKTLFLNLISVKGLGPKTAMTMLQKSGYALITEAISKGDVAALKKLPGIGAKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+GK + V + + P A+ AL N GY Sbjct: 118 ASQIVLDLQGKLV-----------AVEVSSTKMMNYPLEIQEALEALKNFGYKGGD-LNV 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V + + ++ ++ + IR L+ + Sbjct: 166 VGNKMLEQPSMK-TEEYIRFGLKFFAS 191 >gi|145628663|ref|ZP_01784463.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] gi|144979133|gb|EDJ88819.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] Length = 124 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKK 119 >gi|257459533|ref|ZP_05624642.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268] gi|257442958|gb|EEV18092.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268] Length = 184 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 26/208 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I +I GV Y + + T + L + G L +R+D Sbjct: 1 MIAAIEGIITRKEPTACVIKCASGVSYALSLSLNTSAKLTQ-GKLTELACVQILREDADL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL + +++ F L + GVGA AM V S + + + ++ + +PGI K Sbjct: 60 LYGFLDESEKKMFETLIKLSGVGASTAMAVCSTLAPQDFARCVATGDAATLTSVPGIGPK 119 Query: 120 IASRIMTELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+ EL K + ++ A SAL +LG+ +D+ Sbjct: 120 TARRIIAELGDAKLMEFGP------------------SETYKNEAASALQSLGFKRDKIN 161 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S +++ AL+ ++ Sbjct: 162 QILA-----GCSSTNTSDLVKEALKKLA 184 >gi|254303051|ref|ZP_04970409.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323243|gb|EDK88493.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 194 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM------------DMLEDLVLALEGLGYNKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + I+ L+ + Sbjct: 168 LEKI--DLSKFSSLEEAIKGILKNM 190 >gi|227488786|ref|ZP_03919102.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091208|gb|EEI26520.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 200 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +I+ GV Y TL+ L +G+ + + + + L Sbjct: 1 MIASLHGEVVAKSLTGGVIECGGVGYEFLATAATLAELP-LGEDGRVLTTMVIGEKVVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F LQ VQG+G ++A+ L+ + +E+ ++ + K + IPG+ ++ Sbjct: 60 YGFAHDSERTMFSQLQGVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+++ L GK S + ++ALV LG+ +D A A Sbjct: 120 AAKMTAVLDGKLDEFIDSTATTSSAAEPVTGGSET-------VVAALVQLGFDEDSANHA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D +R AL+ + Sbjct: 173 AAWAEESNPGG-DTGTNLRHALQYL 196 >gi|227542217|ref|ZP_03972266.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182046|gb|EEI63018.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 200 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +I+ GV Y TL+ L +G+ + + + + L Sbjct: 1 MIASLHGEVVAKSLTGGVIECGGVGYEFLATAATLAELP-LGEDGRVLTTMVIGEKVVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F LQ VQG+G ++A+ L+ + +E+ ++ + K + IPG+ ++ Sbjct: 60 YGFAHDSERTMFSQLQDVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+++ L GK S + ++ALV LG+ +D A A Sbjct: 120 AAKMTAVLDGKLDEFIDSTATTSSAAEPVTGGSET-------VVAALVQLGFDEDSANHA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D +R AL+ + Sbjct: 173 AAWAEESNPGG-DTGTNLRHALQYL 196 >gi|294101862|ref|YP_003553720.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM 12261] gi|293616842|gb|ADE56996.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM 12261] Length = 201 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 108/208 (51%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + + E+ V++DV G+ + I C L L + + L + ++ L Sbjct: 1 MLRSLEGKVLHIGEENVILDVNGLGFDILCSGSAL-RLCEDNETIRLTTYLQVSENGATL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ +R+ F+ L +V+GVG RV + VL ++ T+++ S+ ++ Q+PG+ K Sbjct: 60 FGFSSEQEREVFIKLLTVKGVGGRVGLAVLRTLSPTQVIRSVATSDTDTFLQVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK + ++ ++ +E+ + + +AL +LG+ Q++ + Sbjct: 120 AERLCFELK------RHLSEEMLAEFAEEEVPSILVKNTVA---AALRSLGFTQNEVYSV 170 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAI 205 + + ++ + D ++ +++ ALR + Sbjct: 171 MNRLKREMGSEFDTTKEDILLKRALREL 198 >gi|57167798|ref|ZP_00366938.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228] gi|305432180|ref|ZP_07401344.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter coli JV20] gi|57020920|gb|EAL57584.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228] gi|304444723|gb|EFM37372.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter coli JV20] Length = 183 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 25/207 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I + +I G+ Y ++ + + L + LF+ +++D + Sbjct: 1 MVVAIEGIITKKEPTFAIIKCASGLSYGVFISLFCAAKL-ETHQKYELFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM + S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGASTAMAICSSLDVNSFYKALNLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + + S+ A++AL++LG+ QD+ + Sbjct: 120 SAKRIIVELGD------------------AKVQLESVSDDKSEALAALLSLGFKQDKILS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + N D S++I+ AL+ ++ Sbjct: 162 VLST-----CNGKDTSELIKEALKKLA 183 >gi|189485463|ref|YP_001956404.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254767397|sp|B1H0B1|RUVA_UNCTG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170287422|dbj|BAG13943.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 204 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 103/211 (48%), Gaps = 13/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFV---ETHMRQDQ 57 MI + G ++ D + IDV G+ Y I PI T L + + +++ M Sbjct: 1 MIDYLYGTLDSKSTDGITIDVNGIGYEISVPISTFLKLPETRNPIKIYIVESTAGMYGGV 60 Query: 58 IRLFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITA--TELVESIILQNSKVIAQIP 114 I L+GF + +R+ ++L++ V G+GA+ AM +I+ +II +N ++ +I Sbjct: 61 ISLYGFFTIEEREMYLLIKDKVHGIGAKKAMEYTDKISKSFANFKTAIISKNPSMLNEIF 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G + K A +++ LK K +++ + ++ K+ + AI+ L+ LGY Sbjct: 121 GFTKKTADKLIVALKDKISTVNVLNKE------KQTGAETIKNTMVSEAIAGLITLGYKM 174 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA AV +V + +NI +I+ +L+ + Sbjct: 175 QQARVAVTNVYEHNENIT-LEDLIKKSLQYL 204 >gi|300870312|ref|YP_003785183.1| Holliday junction DNA helicase RuvA [Brachyspira pilosicoli 95/1000] gi|300688011|gb|ADK30682.1| holliday junction DNA helicase, RuvA [Brachyspira pilosicoli 95/1000] Length = 194 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 99/208 (47%), Gaps = 16/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I+G + + E + + GV Y I + D L+ + ++D + Sbjct: 1 MFAFIEGKVCTISEGIIALLCSNGVAYEIIVSKKLNVN---NDDNIRLYTQLIHKEDSMT 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +++ F L S GVGA++AM VLS + E++ + ++ ++ ++ G+ +K Sbjct: 58 LYGFKTREEKKMFNTLMSASGVGAKLAMEVLSTYSIDEIMHILFNKDINMLKKVQGMGVK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ E++ K + + N+ ++ + I AL++LG+ ++A Sbjct: 118 KAEKLLFEIRDKIEKIDINISSSKISYNENES----------DVIKALISLGFSNNEAVK 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 A+ ++ + K +I LALR +S Sbjct: 168 ALSNI--ENKENKTTEDLISLALRNLSS 193 >gi|255322240|ref|ZP_05363386.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277] gi|255300613|gb|EET79884.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277] Length = 184 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I +++ GV Y + + + L + G L + +R+D Sbjct: 1 MIKAIEGIITKKEPANLILKTAGGVSYGVAISLFCSAKL-ERGQSVELNITQIIREDADL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F L + G+GA AM V S + + ++ ++ + +PGI K Sbjct: 60 LYGFLDSNEQKMFETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL +++ ++PS AI AL +LG+ +++ T Sbjct: 120 TARRIIAELSDAKMTMDE-----------------NLPSHQHEAILALESLGFKREKITK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ E + + ++I+ AL+ ++ Sbjct: 163 ALS-----ECDAQNTGELIKQALKKLA 184 >gi|83590537|ref|YP_430546.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica ATCC 39073] gi|123725675|sp|Q2RHT6|RUVA_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83573451|gb|ABC20003.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica ATCC 39073] Length = 202 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + + +L++ G+ +++ T G ++ + +R+D + L Sbjct: 1 MIGYLRGRLHLVTPEGILLETGGIGWLVRT--VTNRSWPAPGTEIAVYTQLVVREDAMEL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LL+ V G+G R A+ +L +L +I +S + +PGI K Sbjct: 59 YGFTRPEELHLFTLLRGVNGIGPRGALQILGAAKPEQLSRAIAAGDSAFLTALPGIGAKK 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + V + + + + GY +++ Sbjct: 119 AQRLLLELKDAVLKSGLVDGTETEAIPAGGGDNDEALAALLAL-------GYSREEIGPI 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V ++ N A + +++ L+ Sbjct: 172 LARVRQELGNAAPTTAVLQAVLK 194 >gi|88607371|ref|YP_504791.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ] gi|123722839|sp|Q2GLG0|RUVA_ANAPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|88598434|gb|ABD43904.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ] Length = 191 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI-R 59 MIG + G IE + + +++ V GV YI++ RTL K GD L++ET++ +D + + Sbjct: 1 MIGTLSGIIEEVQDTSIILAVGGVGYIVHVSYRTLIN-CKRGDSIKLYIETYVNRDNVPQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ +L V G+ R A+ +L R+T +L +I+ ++ + ++ G+ K Sbjct: 60 LYGFTDTEEQNCLKMLIKVSGINYRTALAILDRLTPDQLFSAIVNEDKAAL-KVGGVGAK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + +RI TEL L + ++ +A+SAL++LGY + + Sbjct: 119 LINRIFTELTPLVQKLEFNIMDKRGPSVED-----------SDALSALLSLGYEKTRVLN 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V + S +R AL+ +S Sbjct: 168 ALEKV----GVSHNLSDTVRFALKELS 190 >gi|254246308|ref|ZP_04939629.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184] gi|124871084|gb|EAY62800.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184] Length = 164 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P+ T L + G+ L + +R+D L+GFL+ +R F L + G+GAR+A+ V Sbjct: 1 MPMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAV 60 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 LS ++ EL +++ +Q++ + ++PGI K A R L ++ + Sbjct: 61 LSGMSVQELAQAVTMQDAARLTRLPGIGKKTAER-----------LLLELKGKLGADLGA 109 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A S A + ++AL+ LGY + + A+ +V S+ I+LAL+A+S Sbjct: 110 LAGAASASDHATDILNALLALGYSEKEGLAAIKNV----PAGTGVSEGIKLALKALS 162 >gi|268679680|ref|YP_003304111.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum DSM 6946] gi|268617711|gb|ACZ12076.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum DSM 6946] Length = 186 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 22/206 (10%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + +V + G+ Y ++ + + + + ++ + +L V +R+DQ Sbjct: 1 MIVGIEGIVVKKEVTFVYLKTTSGLSYKVFISLFSSARI-QLNEKISLHVSQIIREDQHS 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ + +++ F L + G+G A+ V S ++ + +++ QN ++PGI K Sbjct: 60 LYGFVDENEKKVFDTLVKLNGIGPSTALAVCSTLSPDDFAHALVSQNISAFQKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL ++ L H S A AL +LG+ ++ Sbjct: 120 SAKRILVELSDFSLQL---------------LHEDFTNSSLQEASMALESLGFKKEMIKK 164 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D II+ AL+ + Sbjct: 165 VLSQI-----QGGDTQTIIKEALKKL 185 >gi|160934125|ref|ZP_02081512.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753] gi|156866798|gb|EDO60170.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753] Length = 168 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 10/175 (5%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L IG L+ ++R+D + LFGF S + F LL SV GVG +V + +LS Sbjct: 1 MNTQRSLPAIGKEAVLYTHMNVREDAVDLFGFSSLAELNCFKLLTSVSGVGPKVGLAILS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ ++ ++ + K + G+ K+A R++ ELK K +L + + Sbjct: 61 VLSPEQVAVAVAAGDFKTLTMAQGVGNKLAQRVILELKDKLKALGGGEEVTAAAG----- 115 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + A A++AL LGY V V+ K + ++IRL L+A++ Sbjct: 116 -VVNAAGNAAEAMNALTVLGYTPSD----VAPVVAKFDSSLPVEELIRLTLKAMA 165 >gi|262066188|ref|ZP_06025800.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum ATCC 33693] gi|294783453|ref|ZP_06748777.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA] gi|291380095|gb|EFE87613.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum ATCC 33693] gi|294480331|gb|EFG28108.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA] Length = 194 Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + +G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKI-DLGNKYKFYIYNHIKEDAYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ + +L + G+G +A+ VLS + ++VE I + + ++P + K Sbjct: 60 IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LK K +L+ + +S + + AL LGY + + Sbjct: 120 AQIIILDLKAKLKNLTYTEVETISI------------DMLEDLVLALEGLGYTKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + + I+ L+ + Sbjct: 168 LEKV--DLSAYSSLEEAIKGILKNM 190 >gi|167847253|ref|ZP_02472761.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei B7210] Length = 162 Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 15/175 (8%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L G+ L + +R+D L+GFL+ +R F L + GVGAR+A+ VLS Sbjct: 1 MSTFYNLPHTGEKVVLLTQLIVREDAHLLYGFLTPPERSTFRELLKITGVGARMALAVLS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ EL +++ LQ++ + ++PGI K A R L ++ + A Sbjct: 61 GMSVAELSQAVTLQDAARLTRVPGIGKKTAER-----------LLLELKGKLGADLGPLA 109 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 S A + ++ALV LGY + +A A+ +V S+ I+L+L+A+S Sbjct: 110 GAASPSDHATDILNALVALGYSEKEALAAIKNV----PAGTGVSEGIKLSLKALS 160 >gi|32266013|ref|NP_860045.1| Holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC 51449] gi|44888424|sp|Q7VIU0|RUVA_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|32262062|gb|AAP77111.1| holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC 51449] Length = 196 Score = 170 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-----KIGDFCTLFVETHMRQ 55 MI ++G I L Y IDV GV Y + + S L + + +R+ Sbjct: 1 MIVGLRGTIIRLEPMYAEIDVGGVIYGMQMSLNATSMLQTKIDSQPDAPVKIICAQIIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D LFGF ++++Q F L + GVG +VA+ +LS T T + I ++ + + ++PG Sbjct: 61 DAHLLFGFCEEIEKQTFERLIKISGVGPKVAIAILSTYTPTHFAKIIADKDIEALKKVPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I +K A++IM ++ G L + ++ I + A AL +LG+ ++ Sbjct: 121 IGVKGAAKIMVDIAGFFAQL----------LQSQEESIAPSNNLKYEASLALQSLGFKRN 170 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S+I++ AL+ ++ Sbjct: 171 EIQKVLEHI-----EALSVSEIVKEALKRLA 196 >gi|218296106|ref|ZP_03496875.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23] gi|218243483|gb|EED10012.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23] Length = 191 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + E L+ V GV + + P L L + G+ + +R++ + L Sbjct: 1 MIRYLKGVVARKEEGSFLLLVGGVGFQVQAPSPFLQGL-REGEEVGVHTHLALREEGLFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV GVG +VA+ +LS + L +++ + +++ G+ ++ Sbjct: 60 FGFPEEESLKLFELLLSVSGVGPKVALALLSALPPRLLAQALAEGDLRLLTSASGVGRRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELKGK ++ S +E + G+ + QA + Sbjct: 120 AERLALELKGKVPKDLLTGEKVESREAEEAILALAAL-------------GFKEGQARSV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L K A ++I+ ALR + Sbjct: 167 VLDLLAKNPG-AKAQELIKEALRRL 190 >gi|150020803|ref|YP_001306157.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis BI429] gi|166231454|sp|A6LLH1|RUVA_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149793324|gb|ABR30772.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis BI429] Length = 189 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + + ++V + Y I T + + +F + + D+I L Sbjct: 1 MIYAMYGVLEDIENGKLYLNVNEIVYEIVVGD-TGYFEDFLNEKIKVFTKMIVNDDEISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF L + F L V +G + A+ +++ + +V +I+ ++ K ++ +PGI K Sbjct: 60 YGFSDVLKLKLFEKLILVNKLGPKSALKIITSSDVSYIVSAIVNEDVKTLSTLPGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + + AI ALV LG+ ++Q+ A Sbjct: 120 AERIILELKDSMKEFDVTLTE--------------KDKKILEAIEALVTLGFSRNQSKKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +LKK+ ++ D II+ AL+ +S Sbjct: 166 VTQILKKDDSLDD---IIKKALKFLS 188 >gi|157364836|ref|YP_001471603.1| RuvA domain-containing protein [Thermotoga lettingae TMO] gi|157315440|gb|ABV34539.1| RuvA domain protein [Thermotoga lettingae TMO] Length = 186 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 21/202 (10%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 +KG + V++++ G I C I TL +IG L Q+ I ++GFL Sbjct: 3 VKGTVHSKNGSSVILEINGFLIKILCDIETLEK-AQIGQTVQLHTHLEFSQEGITIYGFL 61 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S F + V +G + A+ ++S ELV II Q+ + +++ PGI K A R+ Sbjct: 62 SKERLYVFEKILKVSKIGPKTALRIVSTSEPEELVHLIISQDVEKLSRFPGIGKKTAERL 121 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + ELK + + S +++S +AI ALV LG+G+ ++ A SV Sbjct: 122 IAELKDEEFEIKSDYSKELS-----------------DAIDALVALGFGKIESREAAKSV 164 Query: 185 LKKEKNIADDSQIIRLALRAIS 206 K QI++ AL+ +S Sbjct: 165 YHSSKKA---EQIVKEALKMLS 183 >gi|237739486|ref|ZP_04569967.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31] gi|229423094|gb|EEO38141.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31] Length = 194 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + +G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKI-DLGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ + +L + G+G +A+ VLS + ++VE I + + ++P + K Sbjct: 60 IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LK K +L+ + +S + + AL LGY + + Sbjct: 120 AQIIILDLKAKLKNLTYTEVETISI------------DMLEDLVLALEGLGYTKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + + I+ L+ + Sbjct: 168 LEKV--DLSAYSSLEEAIKGILKNM 190 >gi|320449357|ref|YP_004201453.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01] gi|320149526|gb|ADW20904.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01] Length = 191 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + E L+ V GV +++ P L L K G + +R++ + L Sbjct: 1 MIRYLRGTVLKREEGGFLLLVNGVGFLVQAPQTFLQSL-KEGQEVAVHTHLQLREEGLFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LL SV GVG +VA+ +LS +T L +++ + +++ G+ ++ Sbjct: 60 YGFPDEESLLLFELLLSVSGVGPKVALSLLSALTPRLLAQALAQGDLRLLTAASGVGRRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELKGK Q+ A AI AL LG+ + QA Sbjct: 120 AERIALELKGKVPPSLLTGQK-------------VESQAAEEAILALTALGFKEGQARGV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L K + A ++I+ AL+ + Sbjct: 167 VLDLLAKRPS-ASAQELIKEALKRL 190 >gi|73667297|ref|YP_303313.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str. Jake] gi|90134943|sp|Q3YRE0|RUVA_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72394438|gb|AAZ68715.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str. Jake] Length = 190 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 110/207 (53%), Gaps = 19/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR- 59 MIG + G IE +Y Y++++V V YI++ R L KIG+ L++ETH+ +D + Sbjct: 1 MIGSLTGIIEEIYITYIILNVGNVGYIVHVSQRVLQT-CKIGNNIKLYIETHVNRDNLTQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL ++ + +L ++ G+ + AM +LS+++ ++ +++ N + GI K Sbjct: 60 LYGFLDKQEQDYMRMLITINGINYKTAMSILSKLSPEQIFSAVVSNNKNAF-RGNGIGEK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI TEL+ K + + ++++AL++LGY + +A Sbjct: 119 LAGRITTELQYKISKMPIEETLIIK---------------EDDSLAALISLGYDKLKAFN 163 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + K + A+ +IIR AL+ +S Sbjct: 164 AIQEI-KSDFPNANIQEIIRKALQKLS 189 >gi|307718817|ref|YP_003874349.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM 6192] gi|306532542|gb|ADN02076.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM 6192] Length = 197 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 18/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G G+ + VLI+ G+ + I P LS L GD L V + R+D + L Sbjct: 1 MLYSLSGVYRGIEGEKVLIETGGLTWEIDVPSSLLSQLPDPGDSLLLHVYLYHREDVLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R+ F+ L VQG+G R A+ ++S + E I ++ +A+ PGI K Sbjct: 61 IGFASREERRLFLDLLKVQGIGPRQALRIISSVPVPLFREIIQKEDLARLAKTPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG ++ + ALV +G+ + +A Sbjct: 121 AQKLLLTLKG--------------SYVRQGTGDTEEAGPHRELVEALVEMGFDRARAERV 166 Query: 181 VVSVLKKEKNIADDS----QIIRLALRAIS 206 + ++++ +I+R A+ +S Sbjct: 167 LPDIIREVSEGEGVEGKEQEILRRAIIRLS 196 >gi|223040201|ref|ZP_03610480.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267] gi|222878562|gb|EEF13664.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267] Length = 184 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I +++ GV Y + + + L + G L + +R+D Sbjct: 1 MIKAIEGVITKKEPANLILKTAGGVSYGVAISLFCSAKL-ERGQSVELNITQIIREDADL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F L + G+GA AM V S + + ++ ++ + +PGI K Sbjct: 60 LYGFLDSNEQKMFETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL +++ ++PS+ AI AL +LG+ +++ T Sbjct: 120 TARRIIAELSDAKMTMDE-----------------NLPSYQHEAILALESLGFKREKITK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ E + + ++++ AL+ ++ Sbjct: 163 ALS-----ECDAQNTGELVKQALKKLA 184 >gi|33865569|ref|NP_897128.1| Holliday junction DNA helicase RuvA [Synechococcus sp. WH 8102] gi|44888398|sp|Q7U7F0|RUVA_SYNPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33632738|emb|CAE07550.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 8102] Length = 205 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 17/213 (7%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG +KG+++ + + VLI GV Y + R + ++ + D Sbjct: 1 MIGWLKGDVQHRDQKGSRNLVLIACGGVGYDVQLIERDWQAV-STDQRHEFWIHQVVSAD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 ++LFGFL +R F L V GVG + + +L+ ELV +++ + K + + G+ Sbjct: 60 NLQLFGFLQLAERDLFRELIQVSGVGPQAGLALLNACAYKELVTALVHSDLKTLCRAKGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ + V + A + I+ L LG+ + Sbjct: 120 GKRTAERLALELRTRLTD----------SVASTGPERNQLDPVAPDLIATLETLGFETHE 169 Query: 177 ATTAVVSV--LKKEKNIADDSQIIRLALRAISC 207 A+ + + ++ DD +R ++ +S Sbjct: 170 IRDALQRLNGMGGPQDGDDDDAWLRACIKLMSS 202 >gi|256026581|ref|ZP_05440415.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D11] gi|289764586|ref|ZP_06523964.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11] gi|289716141|gb|EFD80153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11] Length = 194 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190 >gi|237744846|ref|ZP_04575327.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1] gi|229432075|gb|EEO42287.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1] Length = 194 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ G+ Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LDKI--DLSKFSSLEDAIKGILKNM 190 >gi|34763029|ref|ZP_00144004.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742027|ref|ZP_04572508.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13] gi|256845368|ref|ZP_05550826.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2] gi|294785335|ref|ZP_06750623.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27] gi|27887289|gb|EAA24385.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429675|gb|EEO39887.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13] gi|256718927|gb|EEU32482.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2] gi|294487049|gb|EFG34411.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27] Length = 194 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L ++ +S + I AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLIYTEEETVSM------------DMLDDLILALEGLGYNKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190 >gi|332298112|ref|YP_004440034.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema brennaborense DSM 12168] gi|332181215|gb|AEE16903.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema brennaborense DSM 12168] Length = 205 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 15/213 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + ++ G+ + I P TL L +G+ ++ + R+D ++L Sbjct: 1 MFNSLYGTITAKLPQTIYLETDGIEWDIAVPDTTLDTLPPVGERARVYTWLYHREDAVKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F+ L V GVGA+ A+ ++S I +LVE++ ++ + ++PG+ K Sbjct: 61 FGFATAADRLLFLDLLKVDGVGAKGALKIMSGIAPRQLVEALDSEDLSQLERLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++M LKGK + + + + I+AL ++GY + Sbjct: 121 AQKMMLTLKGKL--------ALSADSGRGSVQRSPSAAKWQDVITALADMGYDKKVCEET 172 Query: 181 VV------SVLKKEKNIADDSQII-RLALRAIS 206 + + KN A +++ R A+ ++ Sbjct: 173 IDRLEPILAAELDGKNKATQEELMFRRAIVELA 205 >gi|237752874|ref|ZP_04583354.1| holliday junction DNA helicase motor protein [Helicobacter winghamensis ATCC BAA-430] gi|229375141|gb|EEO25232.1| holliday junction DNA helicase motor protein [Helicobacter winghamensis ATCC BAA-430] Length = 193 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 MI ++G I + + GV Y ++ ++T + IG+ L +R+D Sbjct: 1 MIIALEGEIFLKEPTRLGLKCTGVVYEVFISLQTSQQIQANIGEKLALHTTQIIREDAQM 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL L++ F L + GVG +VAM +LS T + + + K + ++PGI K Sbjct: 61 LFGFLELLEKTLFERLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL G ++ L + ++ S I AL +LGY D Sbjct: 121 SAGRILVELSGWSLDL-----------VQGESLNVKKDSNLQQVILALESLGYKND---- 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + V K +N + S +++ AL+ + Sbjct: 166 VIARVTKGLEND-EVSAMVKAALKRL 190 >gi|227877607|ref|ZP_03995661.1| helicase Holliday junction [Lactobacillus crispatus JV-V01] gi|256844550|ref|ZP_05550036.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 125-2-CHN] gi|256849061|ref|ZP_05554494.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US] gi|262047543|ref|ZP_06020498.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus MV-3A-US] gi|293381579|ref|ZP_06627566.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1] gi|312977890|ref|ZP_07789636.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus CTV-05] gi|227862801|gb|EEJ70266.1| helicase Holliday junction [Lactobacillus crispatus JV-V01] gi|256613628|gb|EEU18831.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 125-2-CHN] gi|256713837|gb|EEU28825.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US] gi|260572119|gb|EEX28684.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus MV-3A-US] gi|290921849|gb|EFD98864.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1] gi|310895197|gb|EFQ44265.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus CTV-05] Length = 195 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV++DV GV Y +Y P G +F+E +R I L Sbjct: 1 MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQ---GQKAKVFIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + + + N +P +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYVARLDRPDNGEN--------VPPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 + K N AD Sbjct: 170 TPKLEKVAANTAD 182 >gi|322378554|ref|ZP_08053000.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS1] gi|322380312|ref|ZP_08054527.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS5] gi|321147264|gb|EFX41949.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS5] gi|321149016|gb|EFX43470.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS1] Length = 183 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 23/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + ++ +++ GV Y ++ + L +++D L Sbjct: 1 MIVGLRGIILQVLPTFIELEINGVVYGVHV---RAGENFESKQEVFLHTAQIIKEDGHSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +++ F L V GVG RVA+ +LS + + I ++ K + ++PG+ K+ Sbjct: 58 YGFLQRTEKELFERLLKVNGVGPRVALAILSTYSCADFSVCIQSKDLKALQRVPGVGAKL 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G + Q + A+ L +LG+ +A Sbjct: 118 AGKIMLDLAGLVL----------------QEETEIKDTAIEQAVLGLQSLGFKTTEAFK- 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D +I+LAL+ + Sbjct: 161 ---ICSNLPKGLDTPTLIKLALQQL 182 >gi|260494643|ref|ZP_05814773.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33] gi|260197805|gb|EEW95322.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33] Length = 194 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ G+ Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190 >gi|217077241|ref|YP_002334959.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B] gi|226725448|sp|B7IHQ4|RUVA_THEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|217037096|gb|ACJ75618.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B] Length = 189 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V ++V + Y I T I ++ + + D I L Sbjct: 1 MIHALNGKVESIENGKVYVNVNDLIYEIIVGD-TGDFEEYINRNVKIYTKMVVNDDGISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + F L V +G + A+ ++S + +V +II ++ K ++ +PGI K Sbjct: 60 YGFLEVIKLKLFEKLIGVNKLGPKSALKIISSNSVESVVSAIINEDVKALSSLPGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK L I + AI ALV LG+ ++QA A Sbjct: 120 AERIVLELKDTIKELD--------------VSINEKDRKVLEAIEALVTLGFNRNQAKKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V K+ + D II+ ALR +S Sbjct: 166 VNKVAAKDDKLDD---IIKKALRFLS 188 >gi|315187235|gb|EFU20992.1| Holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM 6578] Length = 197 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 18/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G G+ + VLI+ G+ + I P LS L + GD L+V + R+D + L Sbjct: 1 MLYSVRGVYRGVDGEKVLIETGGLTWEIDVPSSILSQLPEPGDSLLLYVYLYHREDVLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R+ F+ L VQGVG R A+ ++S + E I ++ +A+ PGI K Sbjct: 61 IGFASREERRLFLDLLKVQGVGPRQALRIISSVPVPIFREIIQNEDLARLAKTPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG S V+Q K H + AL +G+ + +A + Sbjct: 121 AQKLLLTLKG------SYVKQGPGGTEKAGPH--------RELVEALAEMGFDRSRAESV 166 Query: 181 VVSVLKKEKNIADDS----QIIRLALRAIS 206 + ++++ +I+R A+ +S Sbjct: 167 LPDIIQEVSGGESVEGKEQEILRRAIIRLS 196 >gi|295692269|ref|YP_003600879.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus crispatus ST1] gi|295030375|emb|CBL49854.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus crispatus ST1] Length = 195 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV++DV GV Y +Y P G +F+E +R I L Sbjct: 1 MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQ---GQKAKVFIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D + +P +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKL--------GDYVARLDRPDNGEDVPPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 + K N AD Sbjct: 170 TPKLEKVAANTAD 182 >gi|86152153|ref|ZP_01070365.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 260.94] gi|315124320|ref|YP_004066324.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840938|gb|EAQ58188.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 260.94] gi|315018042|gb|ADT66135.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 183 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASAQA-----TSTSELIKEALKKL 182 >gi|56416490|ref|YP_153564.1| holliday junction DNA helicase [Anaplasma marginale str. St. Maries] gi|222474859|ref|YP_002563274.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Florida] gi|255002828|ref|ZP_05277792.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Puerto Rico] gi|255003960|ref|ZP_05278761.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Virginia] gi|269959097|ref|YP_003328886.1| holliday junction DNA helicase motor protein [Anaplasma centrale str. Israel] gi|81359282|sp|Q5PBM0|RUVA_ANAMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766938|sp|B9KHQ6|RUVA_ANAMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56387722|gb|AAV86309.1| holliday junction DNA helicase [Anaplasma marginale str. St. Maries] gi|222418995|gb|ACM49018.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Florida] gi|269848928|gb|ACZ49572.1| holliday junction DNA helicase motor protein [Anaplasma centrale str. Israel] Length = 190 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 21/208 (10%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI- 58 MIG + G +E + + +++ V GV Y++ P R LS + GD L++ET++ +D + Sbjct: 1 MIGTLSGTVEEVVCSNRIILCVGGVGYLVQLPGRVLSG-CQHGDHVRLYIETYVGRDGVS 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF + ++ +L V GV + AM +L +T ++ +I+ ++ + ++ G+ Sbjct: 60 QLYGFANREEQNCMRMLIKVSGVNYKTAMAILDVLTPEQVFSAIVSEDRAAL-KVGGVGE 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ SRI++EL + E + A++AL++LGY + A Sbjct: 119 KLISRIISELTPQVQKF-------------ELNRFAATTRTDSEAVAALLSLGYERTAAL 165 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V +R AL +S Sbjct: 166 GALQKV----GVCDSTEDAVRRALLELS 189 >gi|300692490|ref|YP_003753485.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum PSI07] gi|299079550|emb|CBJ52228.2| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum PSI07] Length = 162 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 15/175 (8%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L G+ L + +R+D L+GF + +R+ F L + G+GAR+A+ VLS Sbjct: 1 MSTFYNLPATGEKVVLLTQQIVREDAHLLYGFGTAAERETFRQLIKISGIGARIALAVLS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ EL +++ LQ + + +IPGI K A R L ++ + Sbjct: 61 GMSVAELAQAVTLQEAGRLTRIPGIGKKTAER-----------LLLELKGKLGADLGAVP 109 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +M A++ ++AL+ LGY +A A+ V S+ I+LAL+A+S Sbjct: 110 GGPAMSDDAVDVLNALLALGYSDKEAALAIKQV----PTGTGVSEGIKLALKALS 160 >gi|218462458|ref|ZP_03502549.1| Holliday junction DNA helicase RuvA [Rhizobium etli Kim 5] Length = 168 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 37 CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96 LG G+ C LF+ET++R+DQ++LFGF + L+R+WF LLQSVQGVGA+VA+ VLS +T Sbjct: 1 KLGSAGEACVLFIETYVREDQLKLFGFTTALEREWFNLLQSVQGVGAKVALAVLSTLTPG 60 Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156 EL +I LQ+ +++ PG+ K+A R++TELK +A + + + ++ K++ Sbjct: 61 ELANAIALQDRAAVSRAPGVGPKVAMRLVTELKNRAPAFAG---EAINIALKQELGEGVA 117 Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + +A+SAL NLGY +DQA AV + +K AD +++IRL L+ ++ Sbjct: 118 AAPVADAVSALTNLGYSRDQAANAVAAAMKTAGEGADSAKLIRLGLKELA 167 >gi|325001439|ref|ZP_08122551.1| Holliday junction DNA helicase RuvA [Pseudonocardia sp. P1] Length = 173 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 7/176 (3%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 TL L + G+ L +R++ + LFGF +R+ F+LLQ+V G+G R+A+ Sbjct: 1 ATPSTLGGL-RRGEETRLATTLVVREESLTLFGFADTEERELFLLLQTVSGIGPRLALAT 59 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 ++ + L ++ + V+ +IPG+ K A R++ EL+ K + ++ Sbjct: 60 IAVLEPDTLRRALADGDLAVLTRIPGVGRKSAERLVVELRDKVTAPAAAP-----AGATS 114 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A + + AL+ LG+ Q A AV VL ++ + S ++R AL ++ Sbjct: 115 AAAPSPVLGVREQVVEALLGLGFPQRPAEQAVDGVLAEQPD-TSASGLLRTALSSL 169 >gi|28572651|ref|NP_789431.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27] gi|28410783|emb|CAD67169.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27] Length = 174 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 97/185 (52%), Gaps = 15/185 (8%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 G+ +++ P ++ L+ +R+D + L+GF S L+ F L ++ GV Sbjct: 2 HGIGFLVRVPQSFN---PEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFEQLITISGV 58 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141 G RVA+ +LS +T E+ +++ + K + ++ G+ K+A I+ +L GK S+ ++ Sbjct: 59 GPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLAGTIVLQLAGKLTSVPLENRK 118 Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 V++ + + AL+ LG+ + ++ AV SVL+K++++ +I+R A Sbjct: 119 QEQAVDR-----------SAEIVQALIGLGWQRQESAAAVESVLEKDQSLT-MPEILRNA 166 Query: 202 LRAIS 206 LR ++ Sbjct: 167 LRYLA 171 >gi|148926965|ref|ZP_01810642.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845049|gb|EDK22146.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] Length = 183 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCTSGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASAQATG-----TSELIKEALKKL 182 >gi|57237644|ref|YP_178892.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221] gi|86153371|ref|ZP_01071575.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613230|ref|YP_001000488.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81-176] gi|157415070|ref|YP_001482326.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81116] gi|205356769|ref|ZP_03223528.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|73621848|sp|Q5HUZ3|RUVA_CAMJR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230537|sp|A1VZE7|RUVA_CAMJJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|172047113|sp|A8FLL2|RUVA_CAMJ8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57166448|gb|AAW35227.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221] gi|85843097|gb|EAQ60308.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249483|gb|EAQ72443.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81-176] gi|157386034|gb|ABV52349.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81116] gi|205345336|gb|EDZ31980.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|307747711|gb|ADN90981.1| Holliday junction ATP-dependent DNA helicase ruvA [Campylobacter jejuni subsp. jejuni M1] gi|315058253|gb|ADT72582.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni S3] gi|315931217|gb|EFV10189.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 327] Length = 183 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASAQATG-----TSELIKEALKKL 182 >gi|227534464|ref|ZP_03964513.1| crossover junction endoribonuclease subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187863|gb|EEI67930.1| crossover junction endoribonuclease subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 212 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I+ + Y++IDV G+ + + + G+ ++V+ +R + L Sbjct: 15 MYEYFEGIIQAVTPAYIVIDVHGIGFRLLVANPYHF---EAGEQKRVYVQLIIRDNDQTL 71 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F L +V G+G + A+ +L+ +++ L +I + K + + PGI K Sbjct: 72 YGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 131 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +LKGK + ++ V + + A+ A+ GY Q Sbjct: 132 AAQIILDLKGKITTDGQPAAAAIAPVASDVDSELADALAALVAL------GYPQRTVDGL 185 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ K + +R LR +S Sbjct: 186 TDTL--KAFSAKTTDAYLREGLRLLS 209 >gi|315453042|ref|YP_004073312.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] gi|315132094|emb|CBY82722.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] Length = 181 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 25/205 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G++ + + ++V+GV Y + + T S L + G L+ ++ L Sbjct: 1 MIVGLIGHVHSIEPTLIALNVRGVVYGVQVSLHTSSLLQE-GQEVHLYTSLISKEGDQSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +R F+ L + GVG ++A+ +LS T E + Q++K + ++PG+ K+ Sbjct: 60 FGFLELEERALFVRLIKISGVGPKIALAILSVYTPLEFATLLETQHTKALQKVPGVGSKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+IM +L+G S I A+ AL +LG+ + Sbjct: 120 ASKIMFDLEGYLPS-------------------AHQDPAYIQAVQALESLGFKSLEVQKV 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++I+ AL+ + Sbjct: 161 CA-----DLKGLSTEEMIKEALQKL 180 >gi|312622645|ref|YP_004024258.1| holliday junction DNA helicase ruva [Caldicellulosiruptor kronotskyensis 2002] gi|312203112|gb|ADQ46439.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor kronotskyensis 2002] Length = 197 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ L Sbjct: 1 MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 61 --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V N + AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVATTAGKGENNYE--------KLEEISLALLSLGYDIDEVY 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|254796929|ref|YP_003081766.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str. Illinois] gi|254590177|gb|ACT69539.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str. Illinois] Length = 193 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 105/205 (51%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + L ++ +++DV GV Y ++ R + L + G +L++E + ++ +L Sbjct: 1 MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFSENINKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +L V+G+ ++A+ +L+ + EL+ +I ++ + +I GI K+ Sbjct: 60 YGFECKKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RI+TE + L + +S N A+SALV LG+ + Sbjct: 119 VKRIITETYEDFLKLDLQLPGTVSSTNIH---------IVSEAVSALVKLGFQHKPSHKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ ++ + I + +++I LAL+ + Sbjct: 170 VMEIMTNQPAI-EIAELITLALKML 193 >gi|86150190|ref|ZP_01068417.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597606|ref|ZP_01100840.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 84-25] gi|218562427|ref|YP_002344206.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20455273|sp|Q9PPC1|RUVA_CAMJE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85839306|gb|EAQ56568.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190198|gb|EAQ94173.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 84-25] gi|112360133|emb|CAL34927.1| putative Holliday junction ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926045|gb|ADC28397.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni IA3902] gi|315928270|gb|EFV07586.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929355|gb|EFV08561.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 305] Length = 183 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 +VS S++I+ AL+ + Sbjct: 162 VLVSAQATG-----TSELIKEALKKL 182 >gi|317178761|dbj|BAJ56549.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F30] Length = 183 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+V+GV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVRGVVYEVQVSMRT-SALLQAGQEARLKILQVIKEDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+ GI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVQGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L + +Q + S V AL +LG+ + Sbjct: 120 ADKIMVDL------IGFFIQDETSPV-------------RNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|283957218|ref|ZP_06374680.1| putative Holliday junction ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] gi|283791290|gb|EFC30097.1| putative Holliday junction ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] Length = 183 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALTALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASAQATG-----TSELIKEALKKL 182 >gi|148927930|ref|ZP_01811336.1| Holliday junction DNA helicase RuvA [candidate division TM7 genomosp. GTL1] gi|147886719|gb|EDK72283.1| Holliday junction DNA helicase RuvA [candidate division TM7 genomosp. GTL1] Length = 187 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 18/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D ++IDV GV Y + L + + L+ H+R+ L Sbjct: 1 MIAHVVGRLTEKFIDSIIIDVNGVGYEVLVTALEYEEL-ALQEEVKLYTYHHVREQVEEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F LL +VQG+G + A+ +LS + +I +S I + G+ + Sbjct: 60 YGFSSLAGKRLFELLITVQGIGPKAALAILSLGDPEVVRSAIASSDSGFIQRASGVGKRT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L K S + Y QAT Sbjct: 120 ADRVVVDLADKVGLPSQAGHTPKQAGGDDALDALLALG-------------YNVRQAT-- 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + + +R AL+ + Sbjct: 165 --EVLAELDTTLTVEEKVRQALKRM 187 >gi|116494312|ref|YP_806046.1| Holliday junction DNA helicase RuvA [Lactobacillus casei ATCC 334] gi|191637648|ref|YP_001986814.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BL23] gi|239629698|ref|ZP_04672729.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065824|ref|YP_003787847.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus casei str. Zhang] gi|122264259|sp|Q03B18|RUVA_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560092|sp|B3WC55|RUVA_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116104462|gb|ABJ69604.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus casei ATCC 334] gi|190711950|emb|CAQ65956.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus casei BL23] gi|239528384|gb|EEQ67385.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438231|gb|ADK17997.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus casei str. Zhang] gi|327381703|gb|AEA53179.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W] gi|327384869|gb|AEA56343.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II] Length = 198 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I+ + Y++IDV G+ + + + G+ ++V+ +R + L Sbjct: 1 MYEYFEGIIQAVTPAYIVIDVHGIGFRLLVANPYHF---EAGEQKRVYVQLIIRDNDQTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F L +V G+G + A+ +L+ +++ L +I + K + + PGI K Sbjct: 58 YGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +LKGK + ++ V + + A+ A+ GY Q Sbjct: 118 AAQIILDLKGKITTDGQPAAAAIAPVASDVDSELADALAALVAL------GYPQRTVDGL 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ K + +R LR +S Sbjct: 172 TDTL--KAFSAKTTDAYLREGLRLLS 195 >gi|146296577|ref|YP_001180348.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166230531|sp|A4XJS2|RUVA_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145410153|gb|ABP67157.1| Holliday junction DNA helicase subunit RuvA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 197 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ L Sbjct: 1 MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 61 --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I +L+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDYQQLIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVAST--------SGTEEKTYEKLEEISLALLSLGYEIDEIN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|206901849|ref|YP_002251320.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum H-6-12] gi|206740952|gb|ACI20010.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum H-6-12] Length = 193 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 20/204 (9%) Query: 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIRLFG 62 I G + + ED+V++D + IY L K+GD L+V + +D ++LFG Sbjct: 6 HIYGKLLRIAEDFVVVDTGAFGFKIYIGKNLALKLNEKLGDNVLLYVAEVIEKDNVKLFG 65 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 FLS+ +R F L+++ GVG ++A+ ++S + E E + ++ + IPGI KIA Sbjct: 66 FLSEEERDLFESLKNITGVGVKIALRIVSTLPPKEFYEVLEKEDLNTLLNIPGIGKKIAQ 125 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 +I E+KG N E+ I + AL+NLGY + + Sbjct: 126 KIFLEIKGVIPK---------RVYNDEENVIKN----------ALLNLGYDKKDIELVMR 166 Query: 183 SVLKKEKNIADDSQIIRLALRAIS 206 + K+ K++ + +II+ AL+ +S Sbjct: 167 DIRKEFKSLDNLEEIIKFALKRLS 190 >gi|153952036|ref|YP_001398280.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. doylei 269.97] gi|166230536|sp|A7H450|RUVA_CAMJD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152939482|gb|ABS44223.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. doylei 269.97] Length = 183 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDINSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTRTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASAQATG-----TSELIKEALKKL 182 >gi|312127829|ref|YP_003992703.1| holliday junction DNA helicase ruva [Caldicellulosiruptor hydrothermalis 108] gi|311777848|gb|ADQ07334.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor hydrothermalis 108] Length = 197 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ +I Sbjct: 1 MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNGTKFSEF--LGKEKRVYVSLKFNENLSEI 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V AL++LGY D+ Sbjct: 119 KTASRIILELKETLKK--------EFKVGSTSGKEEKTYEKLEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|317009536|gb|ADU80116.1| Holliday junction DNA helicase RuvA [Helicobacter pylori India7] Length = 183 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+ QGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEAQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181 >gi|284929265|ref|YP_003421787.1| Holliday junction DNA helicase subunit RuvA [cyanobacterium UCYN-A] gi|284809709|gb|ADB95406.1| Holliday junction DNA helicase, RuvA subunit [cyanobacterium UCYN-A] Length = 213 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 109/215 (50%), Gaps = 15/215 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMR 54 MI KG+ + +D ++++V + Y I + L K D+ +F+ R Sbjct: 1 MINYFKGSFVEILKDTKNKIVLIMEVNQIGYEIQITSKLEEKLSNKKSDYIQVFIHLQTR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +D L+GF++ L+++ F L ++ G+GA++++ +L+ + + +L++++ N K++++ P Sbjct: 61 EDSQILYGFINKLEQELFRQLININGIGAQLSITLLNTLGSEKLIKAVCSGNVKMLSESP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A RI+ EL K + L + + E S + + S+L+ LGY + Sbjct: 121 GVGKKTAERIILELNSKLLKLIEAFE-----IKVELHSCNSSENTLEDITSSLLLLGYDR 175 Query: 175 DQATTAVVSVLKKEKNIA---DDSQIIRLALRAIS 206 + V LK + ++ + +++R A+ +S Sbjct: 176 EGVDR-VTVYLKNNQFLSKQINTEELLRTAITWLS 209 >gi|88608038|ref|YP_506455.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str. Miyayama] gi|123763710|sp|Q2GDJ1|RUVA_NEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|88600207|gb|ABD45675.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str. Miyayama] Length = 193 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 106/205 (51%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + L ++ +++DV GV Y ++ R + L + G +L++E + ++ +L Sbjct: 1 MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFLENINKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +L V+G+ ++A+ +L+ + EL+ +I ++ + +I GI K+ Sbjct: 60 YGFECRKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RI+TE + L S + S N A A+SALV LG+ + Sbjct: 119 VKRIITETYEDFLKLDSHLSGIASSTNVH---------IASEAVSALVKLGFQHKPSHKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ ++ K I + +++I LAL+ + Sbjct: 170 VMEIMTKRPAI-EIAELITLALKML 193 >gi|312877191|ref|ZP_07737160.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor lactoaceticus 6A] gi|311796000|gb|EFR12360.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor lactoaceticus 6A] Length = 197 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ ++ +YV+I+ + I+C S +G ++V ++ L Sbjct: 1 MIDSIVGIIQEVFSNYVIINYNNIYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58 Query: 61 --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK VV AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVVATT--------GKEEKTYEKLEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|158316901|ref|YP_001509409.1| DNA recombination protein RuvA [Frankia sp. EAN1pec] gi|158112306|gb|ABW14503.1| DNA recombination protein RuvA domain I [Frankia sp. EAN1pec] Length = 239 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 1/184 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E L ++DV GV +++C TL+ L ++G+ L +R+ ++ L Sbjct: 1 MIASVSGTVEVLSPGSAVVDVGGVGVLVWCTPSTLARL-RVGERARLATTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F +LQ GVG R+A VL + + ++ ++ + ++PGI K Sbjct: 60 YGFRDADERDVFEILQGAAGVGPRLAQAVLGVHSPDVIRRAVAEEDLATLTKVPGIGRKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ + SS V + A + + ALV LGY +A A Sbjct: 120 AQRIVLDLRDRLGPPSSPVPPQRAAAPPPAAADPRLGAAGEQVRDALVGLGYSAKEALDA 179 Query: 181 VVSV 184 VV+ Sbjct: 180 VVAA 183 >gi|225847962|ref|YP_002728125.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644479|gb|ACN99529.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense Az-Fu1] Length = 181 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 28/207 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG I + ++ ++++ G I P K D T++ +++++IR+ Sbjct: 1 MLEFIKGKIVKVDKNKIIVEKDGFGIKINVPDS-----EKFSDEDTVYTILKVKEEEIRV 55 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF + +++ F L + GVG + A+ +L + E ++ + + + ++ GI K Sbjct: 56 IGFKTQEEKELFNKLTQIHGVGEKHALAILGHFSIDEFIDILDQSDVDSLTKVQGIGKKT 115 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK S S + + L NLG+ ++Q+ Sbjct: 116 AQRIIVELKGKVD--------------------FSENSLIQDFVKTLTNLGFDKEQSYKV 155 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 V +LK++ N I++ A+ +S Sbjct: 156 VRKLLKEDNN---VENILKKAISTLSS 179 >gi|289523150|ref|ZP_06440004.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503693|gb|EFD24857.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 196 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + E+ V++DV G I C LS L K TL + + L Sbjct: 1 MIKFVSGAVVSVEENIVVLDVSGFGMEIICSREALS-LCKPSKKVTLPTYLAVSESGPSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R++F++L++V+G+GAR A+ +L ++A EL+E I +N + + ++PG+ K Sbjct: 60 YGFGDDFEREFFLMLKNVKGMGARTAISILRWLSARELIEIIAEKNLEKLEKVPGVGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K L + + +K AL L + + + A Sbjct: 120 AERICFELKDKTKKLFTGKKGTYERSDKLML-----------VRLALKELNFSEGEIDRA 168 Query: 181 VVSVLKKEK-NIADDSQIIRLALRAIS 206 + S+ K + + +++ AL+ +S Sbjct: 169 IGSLQTNAKIDEESEEVLLQKALKVLS 195 >gi|312793294|ref|YP_004026217.1| holliday junction DNA helicase ruva [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180434|gb|ADQ40604.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 197 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ ++ +YV+++ V I+C S +G ++V ++ L Sbjct: 1 MIDSIVGIIQEVFSNYVILNYNNVYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58 Query: 61 --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVAATT--------GKEEKTYEKLEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|217967994|ref|YP_002353500.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM 6724] gi|217337093|gb|ACK42886.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM 6724] Length = 192 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 21/204 (10%) Query: 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIRLFG 62 I G + ++ D ++ID + IY S L ++ + L++ + +D I+ FG Sbjct: 6 HIYGKLLKIHGDSLIIDTGNFGFKIYVSKNLTSKLSEELNNKILLYIAEVIEKDGIKFFG 65 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 FLS+ +R F L+++ GVG ++A+ ++S ++ E E I ++ + +PG+ KI Sbjct: 66 FLSEEERDLFERLKNITGVGIKIALRIVSAMSPKEFYEVIEKEDLNALLMVPGVGKKITQ 125 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 +I E+KG + + L+NLGY +++ + Sbjct: 126 KIFLEIKGVIPKREHKEEDIIKDT--------------------LLNLGYKKEEIEVVMK 165 Query: 183 SVLKKEKNIADDSQIIRLALRAIS 206 + K+ K++ + +IIR ALR +S Sbjct: 166 EIRKEFKDLDNLEEIIRFALRKLS 189 >gi|283954372|ref|ZP_06371893.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 414] gi|283794171|gb|EFC32919.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 414] Length = 183 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLSDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTNMKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ ALR + Sbjct: 162 VLAS-----SQAIGTSELIKEALRKL 182 >gi|323359952|ref|YP_004226348.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium testaceum StLB037] gi|323276323|dbj|BAJ76468.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium testaceum StLB037] Length = 206 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 11/175 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + ED ++I V GV + + + + +GD + +R+D + L Sbjct: 1 MISSLHGTAAHVAEDSLVIVVGGVGFSVAVTSQ-FARTVHVGDDVHVHTNLIVREDALSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L SV GVG + A+GVLS +T ++ +++ + ++ GI K Sbjct: 60 YGFESREELTVFTQLISVTGVGPKSALGVLSSLTVPQIAQAVTDDDDAPFRRVSGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A I+ +L GK + + ++ + + ALV LG+ + Sbjct: 120 AKLIVVQLAGKLAVVPAAAPAAVAGHGQVPLQVT----------QALVGLGWTER 164 >gi|89068047|ref|ZP_01155464.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus HTCC2516] gi|89046286|gb|EAR52343.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus HTCC2516] Length = 222 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 17/221 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ D+VLI V GV Y++Y R ++ L G+ +LF + +R+D ++L Sbjct: 1 MIGRLTGRLDYRAGDHVLISVGGVGYVVYVSERVMAALPGNGEPVSLFTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + +I L +++ I+ G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDARAISVAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---------------SFAINAIS 165 A R++ EL+ KA + ++ + + + A + +A+S Sbjct: 121 AERVVRELRDKAPGVMALGGSIEAALGEVPAAADDGAVLEPADAAPPRAPAGAAQSDALS 180 Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 ALVNLGY A ++ + +IR AL+ ++ Sbjct: 181 ALVNLGYAPA--EAAGAIAEATGAGESETAGLIRAALKLLA 219 >gi|222529107|ref|YP_002572989.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii DSM 6725] gi|254766939|sp|B9MRB2|RUVA_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222455954|gb|ACM60216.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii DSM 6725] Length = 197 Score = 160 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ L Sbjct: 1 MIDSIVGIIQEVFSNYVILNYNNLYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 61 --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVAKLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVAST--------SGKEEKTYEKLEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|283456064|ref|YP_003360628.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1] gi|283102698|gb|ADB09804.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1] Length = 168 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 15/170 (8%) Query: 42 GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101 G ++ ++ QD I LFGFL+ ++ F+ LQ V G+G +VA+ +LS + L + Sbjct: 4 GQEVKVYTSLNVSQDAITLFGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHA 63 Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 + ++ +A+ PG+ K A +I+ ELKG D+S + + I Sbjct: 64 VADGDATALAKAPGLGKKGAQKIILELKG---------SIDLSQIETAASVISRPEDTGS 114 Query: 162 N-AISALVNLGYGQDQATTAVVSVLKKEK-----NIADDSQIIRLALRAI 205 + L++LG+ Q A AV V + + D ++++LAL ++ Sbjct: 115 EQVVEGLISLGWRQQDALHAVQEVCRSNDIATPLSNEDVPRVLKLALTSL 164 >gi|225851116|ref|YP_002731350.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1] gi|225645836|gb|ACO04022.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1] Length = 179 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 30/206 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ +D +ID+ V P + D +F+E ++ D++ L Sbjct: 1 MIEFLKGKIKHKKDDIYIIDLGTVALRFRSPS-------DLKDQSVVFIEMFIKDDRVEL 53 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L S+ GVG + A+ +L + E + ++ + G+ K Sbjct: 54 YGFKTPEEREIFNRLLSINGVGVKHALSILRSFSPERFFEIVENRDITTLTTAQGVGKKT 113 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+GK + + + +D+ + AL LG+ + + + Sbjct: 114 AQRIVLELQGKLDFIENELLKDL--------------------VDALTGLGFDKKRVLSV 153 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 VLK+ N+ + ++LAL+ ++ Sbjct: 154 AKDVLKETDNL---EKALKLALQKLA 176 >gi|257452123|ref|ZP_05617422.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R] gi|317058668|ref|ZP_07923153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R] gi|313684344|gb|EFS21179.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R] Length = 193 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 97/205 (47%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + +Y ++V G+ Y +Y +R + ++G +++ H+R+++ +L Sbjct: 1 MFEYLEGIVAYKKPEYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R+ F LL SV+G+G +A+ LS +LV I + + +IP + K Sbjct: 60 IGFLEEKERKLFELLLSVKGIGVSLALAALSTYPVEQLVAYIQEEKVGQLKKIPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +++ K +++ S ++A + SAL NLGY + + Sbjct: 120 AQQIILDIQSKLKHFG----------VEQRFVEDSSMAWAEDIASALENLGYAKKEVEHL 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ L+ + Sbjct: 170 LQH--ENWTEYQSLEEAMKAILKKM 192 >gi|134093539|ref|YP_001098614.1| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans] Length = 161 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 16/175 (9%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L +G+ L +R+D LFGF + +R F L + G+GAR A+ +LS Sbjct: 1 MSTFYNLPGLGEKVALLTHLTVREDAHILFGFGTAEERNVFKQLVKITGIGARTALSILS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ +L +I LQ + + +IPGI K A R + + + A Sbjct: 61 GMSVADLSNAITLQEAGRLTKIPGIGKKTAER------------LLLELKGKLGADLGAA 108 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + ++AL+ LGY +A A+ V S I+LAL+A+S Sbjct: 109 GGVIHSDATSDILNALLALGYSDKEALLAMKQV----PAGTGVSDGIKLALKALS 159 >gi|33240204|ref|NP_875146.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|44888420|sp|Q7VCI6|RUVA_PROMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33237731|gb|AAP99798.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 222 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 9/200 (4%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI + G ++E+ VLI GV Y + R+L L + L+V R+D Sbjct: 1 MISWLNGLKIEIWENGTRKGVLISCSGVGYEVQLLSRSLQLLNTSKELI-LWVHEVHRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 +L GFL+ L+R F L SV GVG ++A+ +L + A +L+ +I + + PG+ Sbjct: 60 GSQLIGFLNKLERDLFRKLISVSGVGPQLAISLLEKNPAEQLISAITKKKIAQLTSCPGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ EL+ K LS ++ + N + + A S L+NL Y + Sbjct: 120 GKKTAERLVIELQNK---LSDLIGSSLKKTNN-HLELEYETNVADEVRSTLLNLDYKNSE 175 Query: 177 ATTAVVSVLKKEKNIADDSQ 196 A + K+I +Q Sbjct: 176 IEKAFLEFETSSKSIRSKAQ 195 >gi|302872058|ref|YP_003840694.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor obsidiansis OB47] gi|302574917|gb|ADL42708.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor obsidiansis OB47] Length = 197 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ ++ +Y++++ + I+C S +G ++V ++ L Sbjct: 1 MIDSIMGTIQEVFSNYIILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 61 --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVAATT--------GKEEKTYEKLEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S + + I+LAL+ +S Sbjct: 171 QVLSS---GDFSELSLEDGIKLALKKLS 195 >gi|257466083|ref|ZP_05630394.1| Holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans ATCC 25563] gi|315917239|ref|ZP_07913479.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans ATCC 25563] gi|313691114|gb|EFS27949.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans ATCC 25563] Length = 193 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 100/207 (48%), Gaps = 17/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + +Y ++V G+ Y +Y +R + ++G +++ H+R+++ +L Sbjct: 1 MFEYLEGIVAYKKPEYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R+ F LL SV+G+G +A+ LS +LV I + + +IP + K Sbjct: 60 IGFLEEKERKLFELLLSVKGIGVSLALAALSTYPVEQLVAYIQEEKVGQLKKIPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +++ K +++ S ++A + SAL NLGY + + Sbjct: 120 AQQIILDIQSKLKHFG----------VEQRLVEDSSMAWAEDIASALENLGYAKKE---- 165 Query: 181 VVSVLKKEK--NIADDSQIIRLALRAI 205 V +L+ E + ++ L+ + Sbjct: 166 VEHLLQHENWIEYQSLEEAMKAILKKM 192 >gi|312134958|ref|YP_004002296.1| holliday junction DNA helicase ruva [Caldicellulosiruptor owensensis OL] gi|311775009|gb|ADQ04496.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor owensensis OL] Length = 197 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ L Sbjct: 1 MIDSIVGTIQEVFSNYVILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 61 --FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +L+ I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILASIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVAATT--------GKEEKTYEKLEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S + + I+LAL+ +S Sbjct: 171 QVLSS---GDFSELSLEDGIKLALKKLS 195 >gi|314923584|gb|EFS87415.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL001PA1] gi|314966629|gb|EFT10728.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL082PA2] gi|314981358|gb|EFT25452.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL110PA3] gi|315092024|gb|EFT64000.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL110PA4] gi|315092849|gb|EFT64825.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL060PA1] gi|315103631|gb|EFT75607.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL050PA2] gi|315105680|gb|EFT77656.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL030PA1] gi|327327453|gb|EGE69229.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL103PA1] Length = 158 Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 9/163 (5%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105 +L +R++ + L+GF+ DR F L+Q+ GVG ++A ++S + A +L +I + Sbjct: 2 SLHTSLVVREESLTLYGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEE 61 Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 + + ++PGI K A++++ ELK K +L+ + + Sbjct: 62 DDATLCRVPGIGRKGAAKMILELKDKVAALAPRGASASGATH-------VAAPWREQVAE 114 Query: 166 ALVNLGYGQDQATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206 LV LG+ A AV V LK+ ++R ALR+++ Sbjct: 115 GLVGLGWSTKDAEKAVDKVVALKEADPAMSIGNLMRAALRSLA 157 >gi|167770542|ref|ZP_02442595.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM 17241] gi|167667137|gb|EDS11267.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM 17241] Length = 172 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 13/179 (7%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 + TLSCL +G TL+ ++R+D + L+GF + + F +L V GVG + A+ + Sbjct: 2 TTLTTLSCLPPVGGEATLYTHLNVREDALDLYGFYTQAELNAFKMLIGVSGVGPKSALAI 61 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS--LSSVVQQDMSCVN 147 LS +T +L I +SK + PGI K A RI+ E K + + LS + + S + Sbjct: 62 LSDMTPDKLALCIAAGDSKSLRAAPGIGPKAAQRIILECKDRIGASELSGEMSEVASQLR 121 Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 E ++ S GY +A L +I+ L+A+S Sbjct: 122 HETTNMSEAASALAAL-------GYSPTEA----AQALAGLAADMPVEDMIKHGLKALS 169 >gi|325295513|ref|YP_004282027.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065961|gb|ADY73968.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 188 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFV-ETHMRQDQIR 59 MI +KG + Y D + + + + ++ P+ L+ + + GD LFV T + Sbjct: 1 MIDYLKGKVIFKYSDSISLLCGSIAFRVFVPLNLLTEI-REGDKVALFVKFTLPSEGTPS 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R +F L + VG++VAM V+S + EL + ++ K ++ +PG+ K Sbjct: 60 LYGFKTREERVFFEELLKIPKVGSKVAMSVISHFSLDELRNIVSTKDVKTLSTVPGLGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 ++ R++ ELK K I + + L L Y + + Sbjct: 120 LSERVILELKDKPI-------------------FGEERNIPSELLEILTALSYSRKEVVK 160 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + K+++I ++++ ++ +S Sbjct: 161 AVEGIDLKDRSI---EELVKEVVKKLS 184 >gi|330836553|ref|YP_004411194.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta coccoides DSM 17374] gi|329748456|gb|AEC01812.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta coccoides DSM 17374] Length = 209 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 12/197 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL----GKIGDFCTLFVETHMRQD 56 MI + G + + ++ + + I +T S L + L R+D Sbjct: 1 MIHALTGILVSVTAHQAVLACGHMEFEIIISAQTASTLSQLSPEKRQHVRLLTYLQHRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + LFGFLS+ +R F LQ+V G+GA+ A+ +L ++ L+ ++ + K +++IPG+ Sbjct: 61 AMVLFGFLSEQERIVFEQLQTVPGIGAKQAVKILGGMSLVTLLTALDQGDVKTLSRIPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ L+G + +A S + AL +GY + + Sbjct: 121 GSKTAQRLILALRGTLVLEDD--------ATPGKAPSPSATGRWTDLSEALQEMGYDRKK 172 Query: 177 ATTAVVSVLKKEKNIAD 193 + + K+ ++ Sbjct: 173 VMEILARLEKEHESEMS 189 >gi|312969902|ref|ZP_07784085.1| ruvA N terminal domain protein [Escherichia coli 1827-70] gi|310338187|gb|EFQ03276.1| ruvA N terminal domain protein [Escherichia coli 1827-70] Length = 107 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 54/102 (52%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 LI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 62 TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 103 >gi|302338526|ref|YP_003803732.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM 11293] gi|301635711|gb|ADK81138.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM 11293] Length = 202 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 83/214 (38%), Gaps = 19/214 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I G + + + + + + + V R+D + L Sbjct: 1 MIESLTGTITGRQGTVLFLSTGAIEWALEATSSAAMKFASSKETVQIPVHLIHREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F S +R F L V G+G + A+ +LS + A + ++ ++ +++ IPG+ K Sbjct: 61 FAFASKKERNLFRELLKVSGIGPKQAVRILSGMEADRFIAALENEDVDLLSSIPGVGKKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ L+GK + + + AL +G+ + A A Sbjct: 121 AGKIILALRGKLTPAEEEGEAGDESL------------PFKELVEALNGMGFDRKLAEKA 168 Query: 181 VVSVLKKEKN-------IADDSQIIRLALRAISC 207 + + L + + + ++ R A+ +S Sbjct: 169 LKAALNELEPERFEHDHEKLERELFRAAIVRLSS 202 >gi|239618103|ref|YP_002941425.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1] gi|259495648|sp|C5CFS3|RUVA_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239506934|gb|ACR80421.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1] Length = 195 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59 MI ++G I + + V + I C T+ L + L D Sbjct: 1 MIKGVEGEITEISGNEVTLKAGQFYLNILCSTNTIKEL-SLSAKVHLLTYLSFSADRAPE 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++GF + F++L +G ++A+ +LS + L + I ++ ++++PG+ K Sbjct: 60 IYGFKDRAEYNVFLMLLKANKIGPKMALKILSATSPEMLQKMIASKDISGLSRLPGLGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R+++EL + +++S V+ +A+ AL LG+ A Sbjct: 120 TAERLVSELYDLVKDYAVEFPKELSDVS-------------EDAVGALTALGFDMTSAKL 166 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV VLK E+ + + +++R ALR ++ Sbjct: 167 AVNEVLK-EQTVENTQELVRKALRKLN 192 >gi|312880160|ref|ZP_07739960.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM 12260] gi|310783451|gb|EFQ23849.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM 12260] Length = 198 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 11/196 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + + IDV G ++ RT+ + G L + + L Sbjct: 1 MIRSLSGVVESARDGALWIDVNGFGLEVFAS-RTVLEQAEEGHPLRLLAQLILTDSGPSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L V+ +G R+AM +L + ELV +I Q+ + + PG+ K Sbjct: 60 YGFGGEEERRLFQELIQVKNIGGRMAMALLRVFSVAELVAAIRAQDVASLGRAPGVGAKR 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+ K L + + + AL LG+ + A +A Sbjct: 120 AERICFELRPKLDRLFGTAAGETGPLEAGVESLA----------DALEGLGFSRSTARSA 169 Query: 181 VVSVLKKEKNIADDSQ 196 + + + + Sbjct: 170 LEEARRSLEGEEPAEE 185 >gi|237751366|ref|ZP_04581846.1| holliday junction DNA helicase motor protein [Helicobacter bilis ATCC 43879] gi|229372732|gb|EEO23123.1| holliday junction DNA helicase motor protein [Helicobacter bilis ATCC 43879] Length = 189 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KGNIE L V ++V GV Y++ + T + L + TL + +R+D L Sbjct: 1 MIVRLKGNIEKLLPTGVELEVSGVTYMVEISLLTSAAL-QNKTHVTLEIAEIIREDSHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L V GVGA++A+ +LS + + + + N + + GI K+ Sbjct: 60 YGFETRREREVFLQLLKVNGVGAKIALMILSSYSVEQFLAIVQTNNLAALKGVKGIGTKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM EL G Q+ A ALV LG+ Q T A Sbjct: 120 AGKIMLELAG-----------------YTQSIQTPNNVNVQLAHEALVALGFKDTQITQA 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L E + +++ L+ + Sbjct: 163 LQG-LSNEILQMPPNDMVKAILQTL 186 >gi|149175963|ref|ZP_01854580.1| probable holliday junction DNA helicase ruvA [Planctomyces maris DSM 8797] gi|148845117|gb|EDL59463.1| probable holliday junction DNA helicase ruvA [Planctomyces maris DSM 8797] Length = 206 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58 MI I+G + L +I V Y ++ P L IG +L ++ + Sbjct: 1 MITNIRGELIELSLTEAIISVGAFDYEVFIPEFVRRQLQPLIGSEISLKTIQYIEGNPQK 60 Query: 59 -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 RL GF+S +R++F L+ SV GVG + + + R E+ +I ++ K + + Sbjct: 61 GRLTPRLIGFMSHAEREFFELVCSVDGVGVKKTLRAMVR-PVKEVATAIEEKDIKQLTTL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI +A RI+ +L+ K + +V ++ A AL++LGY Sbjct: 120 PGIGPAVAERIVAKLRRKMTKFALIVAKEFPAEE-------GHTDVFSEAYEALLSLGYS 172 Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198 +A T V ++ + K + + Sbjct: 173 ATEARTKVETIAAEGKKFKSIEEFL 197 >gi|222823639|ref|YP_002575213.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter lari RM2100] gi|254766949|sp|B9KFX7|RUVA_CAMLR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222538861|gb|ACM63962.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter lari RM2100] Length = 183 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 25/207 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + +V++ GV Y +Y + K L + +++D + Sbjct: 1 MIVAIEGIVSKKEPTFVVLKTSSGVSYGVYVSLFCSGNFEK-DQKIELSITQIIKEDSHK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F LL + G+GA AM + S + ++ + V ++PGI K Sbjct: 60 LYGFLDTNEQRMFELLIKISGIGATTAMALCSSLDTNTFYTALQSGDESVFKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL I++ + Q + + G+ Q+ Sbjct: 120 SAKRIIAELSDAKINIENSNQDHAQALAALLSL------------------GFKQENILK 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S++I+ AL+ ++ Sbjct: 162 VLRT-----CESQNTSELIKEALKKLA 183 >gi|297518838|ref|ZP_06937224.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50] Length = 101 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 53/101 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y + P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101 +GF + +R F L GVG ++A+ +LS ++A + V + Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNA 101 >gi|325971233|ref|YP_004247424.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp. Buddy] gi|324026471|gb|ADY13230.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp. Buddy] Length = 210 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 107/216 (49%), Gaps = 18/216 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG----KIGDFCTLFVETHMRQD 56 MI I G++ + + V++ V Y++ +T S L + L R+D Sbjct: 1 MINAIIGDVVRVMDGEVILRAGYVEYMLSVSAQTASKLSNLSLEERRAVRLLTVLIHRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + LFGF + +R+ F+ LQ+V G+G++ A+ +LS I+ L +++ N K+++ IPGI Sbjct: 61 SMSLFGFYDEAEREAFLQLQTVSGIGSKQALKILSGISVRNLAQALDTGNLKLLSSIPGI 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K +++ L+ V + + S N +++ S S + I+ALV++GY + + Sbjct: 121 GPKTGQKMILALRD-----VLVFEDEKSKTNGQRSQ--SKASQWSDIITALVDMGYDRRK 173 Query: 177 ATTAVVSVLKKEKNIA------DDSQII-RLALRAI 205 + S+ ++E D Q++ R A++ + Sbjct: 174 VEEVIDSLSEQESEAIGKLSHHDAEQLLFRSAVKLL 209 >gi|296504911|ref|YP_003666611.1| Holliday junction DNA helicase motor [Bacillus thuringiensis BMB171] gi|296325963|gb|ADH08891.1| Holliday junction DNA helicase motor [Bacillus thuringiensis BMB171] Length = 150 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + L+GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ Sbjct: 1 MALYGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVG 60 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +++ +LKGK + D+ + + A+ AL LGY + + Sbjct: 61 KKTARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREV 120 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V +LK+ Q I+ AL + Sbjct: 121 SRVVPELLKE---SLTTDQYIKKALSLL 145 >gi|126696254|ref|YP_001091140.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9301] gi|166230582|sp|A3PCR4|RUVA_PROM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126543297|gb|ABO17539.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9301] Length = 225 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 112/218 (51%), Gaps = 15/218 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53 MI I G++ L++ +VLI+ QG+ Y I L K TL+V+ Sbjct: 1 MISWINGDLVDLWQTNQKFFVLINCQGLGYEIQILESFFLKLRKNQISTKNITLWVKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S+ + +F+ + S++GVG+++ +G+L++ + +E++ +I Q+ K+I + Sbjct: 61 KEDSDLLFGFTSNEQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLICSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K S ++ ++ + + + + L +L Y Sbjct: 121 PGIGQKMSERLILELKSKFK--SEILSEEEKSKGELEIKDPEINKMIEDLQLTLQSLSYK 178 Query: 174 QDQATTAVVSVLK------KEKNIADDSQIIRLALRAI 205 + + ++K K++N ++++LA+R + Sbjct: 179 NKEINNILPIIIKEIDLLGKKENNLSFEKLLKLAMRYL 216 >gi|237755451|ref|ZP_04584075.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium yellowstonense SS-5] gi|237692383|gb|EEP61367.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium yellowstonense SS-5] Length = 179 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 33/204 (16%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I +++++I+ G ++ P + ++ +RQ+ ++L Sbjct: 1 MFDYIKGKITKKGKNHIVIEKLGFGLLVEVPDS------EKFKENIVYTYLLVRQEDVKL 54 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S+ +R F+ L + GVG + A+ ++S + E +E I + + +I GI K Sbjct: 55 LGFVSEEERDLFLKLIQIHGVGVKHALSIISNFSVEEFIEIIENGDVDKLTEIQGIGNKT 114 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK S +SALVNLGY + ++ Sbjct: 115 AQRIIVELKGKI--------------------EFSESDELNQLVSALVNLGYDKKESVKV 154 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 VLK+ K+ I+ AL+ Sbjct: 155 AKKVLKETKD-------IKEALKK 171 >gi|315638160|ref|ZP_07893342.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter upsaliensis JV21] gi|315481696|gb|EFU72318.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter upsaliensis JV21] Length = 183 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 25/207 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I + ++ GV Y IY + + L ++ C L + +++D + Sbjct: 1 MVVAIEGIITKKEPTFAVLKTQNGVSYGIYISLFCAAKL-ELHTKCELLITQIIKEDSHK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F +L V G+GA AM + S + + +++ L + V ++PGI K Sbjct: 60 LYGFLEKDEQKIFEMLLKVNGIGATTAMAICSSLDSNAFYKALSLNDESVFKKVPGIGAK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL ++ ++V + + G+ QD+ Sbjct: 120 SAKRIIVELSDSKMAFNNVSDDKAQALAALLSL------------------GFKQDK--- 158 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 ++S+L D S++I+ AL+ ++ Sbjct: 159 -ILSILAT-CEAKDTSELIKEALKKLA 183 >gi|50954747|ref|YP_062035.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71649473|sp|Q6AFB5|RUVA_LEIXX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|50951229|gb|AAT88930.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 8/195 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +IDV GV + + L ++GD + +R+D ++L Sbjct: 1 MISSLRGTVLSASGGAAVIDVGGVGFAVQLTPDHARSL-RVGDEAFVHTTLIVREDSLQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF Q F LL V GVG + A+ VLS ++ ++ +++ + + GI K Sbjct: 60 FGFSGLEQLQVFELLNGVSGVGPKSAISVLSVLSPDQVADAVAAADDAPFRAVSGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ L GK + + S + + + ALV LG+ + A A Sbjct: 120 AKLIVVSLTGKLAACRR-------PSAPSARRPSAPSSVSDSVLVALVGLGWPEKVAGEA 172 Query: 181 VVSVLKKEKNIADDS 195 V V+ DS Sbjct: 173 VAEVIAGTAESERDS 187 >gi|282852794|ref|ZP_06262136.1| holliday junction DNA helicase RuvA, N-terminal domain protein [Lactobacillus gasseri 224-1] gi|282556536|gb|EFB62156.1| holliday junction DNA helicase RuvA, N-terminal domain protein [Lactobacillus gasseri 224-1] Length = 122 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV++DV G+ Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGK-- 115 Query: 121 ASRIMTEL 128 R++ L Sbjct: 116 --RLLLRL 121 >gi|158522217|ref|YP_001530087.1| DNA recombination protein RuvA [Desulfococcus oleovorans Hxd3] gi|254766957|sp|A8ZUH8|RUVA_DESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158511043|gb|ABW68010.1| DNA recombination protein RuvA domain I [Desulfococcus oleovorans Hxd3] Length = 205 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58 MIG ++G + ED +L+ V Y + P ++ L + GD + + + Q Sbjct: 1 MIGYLEGTLLKKKEDRILLLAGPVGYEVLLPAVVMASLQGKREGDPLFFHIYHYQTERQP 60 Query: 59 R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L GF ++ ++ +F LL +V+ +G A+ L + E+ E+I NS ++ Q+ G+ Sbjct: 61 KPVLIGFNTEEEKDFFHLLITVEAIGPLKAVQCL-TLPIGEVAEAIETGNSALLGQLKGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175 + A +++ LKGK + + + S A + LV LGY + Sbjct: 120 GGRTAQKMIATLKGKVGRFAD-------AGHSSAPDVPVTGSLADQTVEVLVGQLGYKPN 172 Query: 176 QATTAVVSVLKKEKNIADDSQI 197 +A V LK+ +++ + Sbjct: 173 EARLMVAGALKRNPDVSTPEAL 194 >gi|57242124|ref|ZP_00370064.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis RM3195] gi|57017316|gb|EAL54097.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis RM3195] Length = 183 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 25/207 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I + ++ GV Y IY + + L ++ C L + +++D + Sbjct: 1 MVVAIEGIITKKEPTFAVLKTQNGVSYGIYISLFCAAKL-ELHTKCELLITQIIKEDSHK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F +L V G+GA AM + S + + +++ L + V ++PGI K Sbjct: 60 LYGFLEKDEQKIFEMLLKVNGIGATTAMTICSSLDSNAFYKALSLNDESVFKKVPGIGAK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + ++V + + G+ QD+ + Sbjct: 120 SAKRIIVELADAKTAFNNVSDDKAQALAALLSL------------------GFKQDKILS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + K D S++I+ AL+ ++ Sbjct: 162 VLATCEAK-----DTSELIKEALKKLA 183 >gi|116327800|ref|YP_797520.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331541|ref|YP_801259.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280714|sp|Q04RG9|RUVA_LEPBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122284404|sp|Q053A8|RUVA_LEPBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116120544|gb|ABJ78587.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125230|gb|ABJ76501.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 212 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 9/213 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQI 58 MI +KG ++ L Y I+ G+ Y + +T L + + + M + Sbjct: 1 MISGLKGTLKKLEVGYAHIETGGITYEVTISFKTYLELKSLPSHNEVQFQIFHAMNERGQ 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +LFGFL++ D+++F +++ +QG+G A+ +LS +A EL +K + +IP + Sbjct: 61 KLFGFLTEQDKEFFKVIKGLQGIGELTALKILSFFSAEELYRIAQSGEAKELEKIPKVKG 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVN------KEQAHICSMPSFAINAISALVNLGY 172 K + +I E+K L + + E ++ AI LV LG+ Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGTSKEPSISLSSFSETPEEAALSRKREIAILGLVQLGF 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + A+ V +LK + D +IIR L+++ Sbjct: 181 EEKTASKEVDKILKSS-SPTDPGEIIREILKSL 212 >gi|291296179|ref|YP_003507577.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279] gi|290471138|gb|ADD28557.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279] Length = 193 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ +KG + V++ V GV CP TL+ L + G L + +R+D + L Sbjct: 1 MVRYLKGTVLKKSPSSVVLLVGGVGLEASCPASTLAQLSE-GQEAALHTKLVVREDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV GVG +VA+ +LS T L ++ + +++ G+ K+ Sbjct: 60 FGFADERSLELFELLLSVSGVGPKVALNLLSSQTPALLARALAEGDLRLLTAAQGVGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+GK + + S A AL+ LG+ + Q + Sbjct: 120 AERIALELRGKVPAHLM-----------GEGGRLVHSSQTEEAELALITLGFREGQVRSI 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + +K A ++I+LAL+A+ Sbjct: 169 VAEIAQKNPG-AGTQELIKLALKAL 192 >gi|123968451|ref|YP_001009309.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. AS9601] gi|166230584|sp|A2BQZ1|RUVA_PROMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123198561|gb|ABM70202.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. AS9601] Length = 225 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 111/218 (50%), Gaps = 15/218 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53 MI I G++ L++ +VLI+ QG+ Y I L TL+++ Sbjct: 1 MISWINGDLVDLWQTNQKSFVLINCQGLGYEIQILESFFLKLKTNQISTKNITLWIKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S + +F+ + S++GVG+++ +G+L++ + +E++ +I Q+ K+I + Sbjct: 61 KEDSDLLFGFTSKDQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLICSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K S ++ ++ ++ + + + L +L Y Sbjct: 121 PGIGQKMSERLILELKSKFK--SEILSEEEKSKDEFEIKDPEIIKMIEDLQLTLQSLSYK 178 Query: 174 QDQATTAVVSVLK------KEKNIADDSQIIRLALRAI 205 + T + ++K K++N ++++LA+ + Sbjct: 179 NKEINTILPIIIKEIDHLGKKENSLSFEKLLKLAMHYL 216 >gi|187917906|ref|YP_001883469.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH] gi|229560005|sp|B2S1L2|RUVA_BORHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119860754|gb|AAX16549.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH] Length = 196 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E ++I + + + L ++ + + H+R+D+I+L Sbjct: 1 MINKIYGKIIEKRESSIVIVALPFEFEVLVSSFCNAEL-RLLEDVEILTYLHLREDEIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L SV G+G R A+ +LS + E ++I ++ K I+ + GI K+ Sbjct: 60 FGFLNVSEREVFEELISVDGIGPRAALRMLSGMKYDEFRDAIEREDVKRISTVKGIGNKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +L+GK + + + EQ+ VN+G+ + A Sbjct: 120 AGKIFLKLRGKLVKADELTSSVFKFKDLEQSI---------------VNMGFDRKLVVAA 164 Query: 181 VVSVL--KKEKNIADDSQ---IIRLALRAIS 206 + ++ + + + Q + R L+ +S Sbjct: 165 IKEIMLIDEFLMLREVEQEQFLFRETLKRLS 195 >gi|311894864|dbj|BAJ27272.1| putative Holliday junction ATP-dependent DNA helicase RuvA [Kitasatospora setae KM-6054] Length = 203 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88 C TL+ L ++G+ L +R+D + LFGF+ D +R F +LQ+ GVG ++A Sbjct: 29 QCTPATLATL-RVGETARLATSLVVREDSLTLFGFVDDDERATFEVLQAAPGVGPKLAQA 87 Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 +L + L +I + K + +PGI A++++ E K K + V Sbjct: 88 ILGTHSPEALRVAIAGGDEKALIAVPGIGKAKAAKLLLEYKDKLGAPHGSVPA------- 140 Query: 149 EQAHICSMPSFAINAI-SALVNLGYGQDQATTAVVSVLKKEK 189 Q + + P+ + +ALV LGY +A AV V + + Sbjct: 141 -QKPVAAGPAPWHEQLHAALVGLGYAPREAEEAVARVTPEAE 181 >gi|78779241|ref|YP_397353.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus marinus str. MIT 9312] gi|123727890|sp|Q31B28|RUVA_PROM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78712740|gb|ABB49917.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus marinus str. MIT 9312] Length = 225 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 106/215 (49%), Gaps = 17/215 (7%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGK---IGDFCTLFVETHM 53 MI I G + L++ ++LI+ QG+ Y I L TL+++ Sbjct: 1 MISWISGELVELWQTNQKFFLLINCQGLGYEIQVLESLFLKLKTNQITNKNITLWIKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S + +F+ + +++GVG+++ MG+LS+ + +E++ +I QN K+I + Sbjct: 61 KEDSDLLFGFSSKDQKNFFIEILNIRGVGSQIGMGILSKFSISEVINAINTQNKKLICSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K + + Q+ ++ + + L +L Y Sbjct: 121 PGIGQKMSERLILELKSKFR--NELKIQEEKSKDEFHIKDNKINKIVSDIELTLKSLNYT 178 Query: 174 QDQ-------ATTAVVSVLKKEKNIADDSQIIRLA 201 +++ + + S+ KKEK+ ++ LA Sbjct: 179 KNEIKSILPIISKEIDSLTKKEKD-TSFENLLMLA 212 >gi|254525561|ref|ZP_05137613.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus marinus str. MIT 9202] gi|221536985|gb|EEE39438.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus marinus str. MIT 9202] Length = 225 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 106/218 (48%), Gaps = 15/218 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKI---GDFCTLFVETHM 53 MI I G + +++ +VLI+ QG+ Y I L TL+++ Sbjct: 1 MISWINGELVEIWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKNITLWIKYIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S + +F+ + SV+G+G+++ M +L++ + +E++++I Q+ K+I + Sbjct: 61 KEDSDLLFGFASKDQKFFFIEILSVRGIGSQIGMSILNKFSISEIIKAIKTQDKKLICSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K S V ++ + + + + L +L Y Sbjct: 121 PGIGQKMSDRLILELKSKFK--SKVQIEEEKGQEEFEITNPEINKLMDDLQLTLQSLNYK 178 Query: 174 QDQATTAVVSVLK------KEKNIADDSQIIRLALRAI 205 + T + ++K K++ +++LA+ + Sbjct: 179 NKEIKTILPFLIKELGLHTKKEKNLSFENLLKLAMNHL 216 >gi|33861499|ref|NP_893060.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|44888410|sp|Q7V1D3|RUVA_PROMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33634076|emb|CAE19401.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 219 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 98/214 (45%), Gaps = 15/214 (7%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53 MI IKG + ++ Y+L++ QG+ Y I + L+++ Sbjct: 1 MISWIKGELVSSWQANNKFYILVNCQGLGYEIQTLESVFFDINSNKISEKEIILWLKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF + R +F+ + +++G+G+++ M +L++ + +L+ +I + K I+ + Sbjct: 61 KEDSDMLFGFSTKDQRDFFIQILNIKGIGSQIGMSLLNKFSLNQLITAISNNDKKSISTV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 GI K+ RI+ ELK K ++ ++++ +N + S + L +L Y Sbjct: 121 QGIGQKMTERIILELKSKV--INKEIEKENLNINNFLEKNKDLDSIFKDIDLTLQSLNYS 178 Query: 174 QDQAT----TAVVSVLKK--EKNIADDSQIIRLA 201 + + + ++ EK +++ A Sbjct: 179 KKEIKNLFPKLINNIKNSSLEKESISFENLLKEA 212 >gi|88856266|ref|ZP_01130926.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] gi|88814585|gb|EAR24447.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] Length = 205 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIY-CPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + ++I+V GV + P LS ++G L +R+D + Sbjct: 1 MISSLRGTVLAAVGTSIVIEVGGVGLSVSVIPEHALS--VRVGAETQLNTVLIVREDDLS 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + + F LL+ V GVG + AMGVL+ +T ++ ++ +N ++ GI K Sbjct: 59 LYGFRTREELDVFALLRGVTGVGPKSAMGVLAALTPDDIARAVAEENDSAFRKVTGIGPK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD--QA 177 A I+ L GK + D + AL LG+ + + Sbjct: 119 TAKLIVLNLTGKLEVSALKRGPDSVAATPISESVS----------MALQGLGWSEKLARP 168 Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202 E + I+R AL Sbjct: 169 AAEAAFAEASEAEKENTQAILRRAL 193 >gi|119952829|ref|YP_945038.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135] gi|254766946|sp|A1QYH6|RUVA_BORT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119861600|gb|AAX17368.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135] Length = 196 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E ++I + I + LG + + + H+R+D+IRL Sbjct: 1 MINKICGKIVEKRESSIVIVALPFEFEILVSSFCNAELG-LQEDVEILTYLHLREDEIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L SV G+G + A+ +LS I E +++ ++ K+I+ + GI K+ Sbjct: 60 FGFLNVSEREVFEKLISVDGIGPKAALRILSGIKYNEFRDAVEREDVKLISNVKGIGNKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +L+GK + ++ + EQ+ VN+G+ + A Sbjct: 120 AGKIFLKLRGKLVKVNEASSGVLKFKELEQSI---------------VNMGFDRKLVAAA 164 Query: 181 VVSVLKKEKNIA----DDSQ-IIRLALRAIS 206 + ++ ++ + D Q + R LR +S Sbjct: 165 IKEIMLIDEFLMLRQVDQEQFLFREILRKLS 195 >gi|194246569|ref|YP_002004208.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus Phytoplasma mali] gi|254767381|sp|B3R0J1|RUVA_PHYMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193806926|emb|CAP18355.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus Phytoplasma mali] Length = 186 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 91/202 (45%), Gaps = 20/202 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + +++V++D + Y I + K FV H++++ L Sbjct: 1 MYSYIKGKVVNNGQNFVIVDNNNIGYHIIVSNPYFYEINK---EYKFFVHFHIKENLQIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + +F L V +G + A+ + ++ ++I ++ + + PGI +K Sbjct: 58 YGFNDNKNLLFFKKLLDVPTIGPKSALMLSETDNLEQVFQAIENNDNVYLRKFPGIGIKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKG ++ + +N ++ + + L+NLG+ + + + Sbjct: 118 AQQIILKLKG------DLIFSEKIILNPKKTELEKI----------LLNLGFVKKEIKSV 161 Query: 181 VVSV-LKKEKNIADDSQIIRLA 201 + + KKE + +++LA Sbjct: 162 LNQIDDKKELELMLKEVLLKLA 183 >gi|319790481|ref|YP_004152114.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans HB-1] gi|317114983|gb|ADU97473.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans HB-1] Length = 190 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 27/207 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59 M+ + G + G + V + + P R L L + G TL+ E Q+ + Sbjct: 1 MVEAVSGTVSGKGDGAVFLSCGCFTLRLLVPERLLPELHE-GTHVTLYTELLFPQEGAPQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +R+ F L V VG+R+A+ VLS + E V+ + ++ + ++++PG+ K Sbjct: 60 LFGFKTREERELFRQLMKVPKVGSRLALAVLSVFSPEEFVKVLEGEDVEALSKVPGLGRK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 ++ R++TELKGK +S L LGY + Sbjct: 120 LSRRLITELKGKLVS----------------------GEVPREVKEVLRRLGYTTAEINE 157 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + ++ AL+ +S Sbjct: 158 ALKGL---NLTGVGVEEAVKEALKRLS 181 >gi|284044634|ref|YP_003394974.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684] gi|283948855|gb|ADB51599.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684] Length = 198 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 14/178 (7%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y + TL + G TL +R D ++L+GF ++ +R F++L VQ VG +V Sbjct: 31 YRLAVSSETLKQVPAAGKRVTLHSHLIVRDDALQLYGFATEEERDLFLMLLGVQSVGPKV 90 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 A+ VLS T EL+ ++ ++ +PGI + A RI+ EL+ KA ++ Sbjct: 91 ALAVLSGGTPRELLGALAAGDAARFQAVPGIGKRTAERIIVELREKA---------GVAV 141 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + + A LV LG+ D+A + ++I ALR Sbjct: 142 PDDAVHGSVASDDPRTLAREGLVGLGFSLDEAERLLKRA-----PGETAEELIAHALR 194 >gi|213420857|ref|ZP_03353923.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 106 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 51/98 (52%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I VL++ GV Y ++ P+ L + G +F +R+D L+ Sbjct: 9 IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLY 68 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 GF + +R F L GVG ++A+ +LS ++A + V Sbjct: 69 GFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFV 106 >gi|188997620|ref|YP_001931871.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp. YO3AOP1] gi|188932687|gb|ACD67317.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp. YO3AOP1] Length = 179 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 33/204 (16%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I+ +++++I+ G ++ P + ++ +RQ+ +RL Sbjct: 1 MFDYIKGKIKKKDKNHIVIEKLGFGLLVEVPDS------EKFKENIVYTYLLVRQEDVRL 54 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S+ +R F+ L + GVG + A+ ++S + E +E + + + +I GI K Sbjct: 55 LGFVSEEERDLFLKLIQIHGVGVKHALNIISNFSVEEFIEIMENGDVDKLTEIQGIGNKT 114 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK + +SALVNLGY + ++ Sbjct: 115 AQRIIVELKGKI--------------------EFNESDELSQLVSALVNLGYDKKESVNV 154 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V+K+ K+ I+ AL+ Sbjct: 155 AKKVIKETKD-------IKEALKK 171 >gi|24215603|ref|NP_713084.1| Holliday junction DNA helicase RuvA [Leptospira interrogans serovar Lai str. 56601] gi|24196756|gb|AAN50102.1| holliday junction DNA helicase RuvA [Leptospira interrogans serovar Lai str. 56601] Length = 212 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 9/213 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQI 58 MI +KG ++ L +V I+ G+ Y + +T L + L + + + Sbjct: 1 MISGLKGTLKKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQLQIFHSINERGQ 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +LFGFL++ D+++F +++ +QG+G A+ +LS +A +L + +K + +IP + Sbjct: 61 KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEAKELEKIPKVKG 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF------AINAISALVNLGY 172 K + +I E+K L + + + P I LV LG+ Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVILGLVQLGF 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + A+ V VLK + D +IIR L+++ Sbjct: 181 EEKTASKEVDKVLKIF-SSNDPGEIIREILKSL 212 >gi|45657032|ref|YP_001118.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81407392|sp|Q72T73|RUVA_LEPIC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|45600269|gb|AAS69755.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 212 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 9/213 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQI 58 MI +KG + L +V I+ G+ Y + +T L + L + + + Sbjct: 1 MISGLKGILRKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQLQIFHSINERGQ 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +LFGFL++ D+++F +++ +QG+G A+ +LS +A +L + K + +IP + Sbjct: 61 KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEVKELEKIPKVKG 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF------AINAISALVNLGY 172 K + +I E+K L + + + P I LV LG+ Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVILGLVQLGF 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + A+ V VLK + D +IIR L+++ Sbjct: 181 EEKTASKEVDKVLKIF-SSNDPGEIIREILKSL 212 >gi|308271856|emb|CBX28464.1| Holliday junction ATP-dependent DNA helicase ruvA [uncultured Desulfobacterium sp.] Length = 204 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58 MIG ++G + + +L+ V V Y I P + L +GD TL++ H + Q Sbjct: 1 MIGYLEGKLLKKDSERILLLVNHVGYEILLPAIVMETLNTRSVGDEITLYIYYHQSEKQP 60 Query: 59 R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L GF ++++++F SV+ +G A+ L ++ ++ +I +++ + Q+ GI Sbjct: 61 KPVLIGFNLEVEKEFFQYFISVEDIGPLKAVKAL-TMSVRDISRAIESKDAAALKQLKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175 + A +I+ L+GK + + + EQ + I LV+ LGY Sbjct: 120 GNRTAQKIIATLEGKMNKFALIRK-------SEQTYDSVSEDIGQKVIDLLVSQLGYKPG 172 Query: 176 QATTAVVSVLKKEKNIADDSQII 198 +A T VV LK+ K I ++ Sbjct: 173 EAKTMVVQALKRNKFITSPEDLL 195 >gi|123966258|ref|YP_001011339.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9515] gi|123200624|gb|ABM72232.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9515] Length = 228 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 96/217 (44%), Gaps = 18/217 (8%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53 MI +KG + ++ Y+LI+ QG+ Y I + L L+++ Sbjct: 1 MISWVKGKLVSSWQTNNKFYILINCQGLGYEIQTIESVFNELNSKNVSDKEIILWLKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF + R +F+ + +++G+G+++ + +L++ T +++ +I + K+I+ + Sbjct: 61 KEDSDSLFGFFTKDQRDFFIQILNIKGIGSQIGIALLNKFTLNQIINAISNNDKKLISSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 GI K+ RI+ ELK K + ++++ N + S + L +L Y Sbjct: 121 QGIGQKMTDRIILELKSKV--FTQQIEKENLKTNNFLEENKELNSIFEDLELTLQSLNYP 178 Query: 174 QDQAT----TAV-----VSVLKKEKNIADDSQIIRLA 201 + + + E N +++ A Sbjct: 179 NKKIKNLFPKLINDIKDNKIATLEINSISFESLLKEA 215 >gi|148243841|ref|YP_001220080.1| DNA recombination protein RuvA [Acidiphilium cryptum JF-5] gi|146400404|gb|ABQ28938.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum JF-5] Length = 206 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 8/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + +IDV GV Y ++ P TL + T+ ++T M +I L Sbjct: 1 MITQLTGIPRRIGDQECVIDVHGVGYGVHVPSATLDMIEGEAGPVTILIQTRMSDSEISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D Q F L VQGVG A+ +LS++ EL +I + K + + GI Sbjct: 61 YGFATPADLQTFRKLVGVQGVGPATALNLLSQLAPEELWRAIREADQKALTAVKGIGPAA 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+++EL+ A L++ + + ++ + A +L LG+ A A Sbjct: 121 AKRLISELESHAAKLAAEMPAPAARLD--------LGLSADQLAQSLQRLGHAPSAARAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 L K + +++ AL+ Sbjct: 173 AQFALNGAKPGDTEQELVARALQ 195 >gi|269792533|ref|YP_003317437.1| RuvA domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100168|gb|ACZ19155.1| RuvA domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 194 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 13/173 (7%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSR 92 R + G+ L V + I L+GF D +R+ F+LL GVG ++AMG+L+ Sbjct: 32 RAALEMASPGESIRLPVYLSVSDSGISLYGFGDDHERRVFLLLLQASGVGCKMAMGILNS 91 Query: 93 ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152 + E++++I + I++ G+ K A RI ELK K SL + V+ Sbjct: 92 MDKGEVLDAIASGDVARISRAQGVGPKRAERICFELKDKVTSLGIPRGNSGALVSTGS-- 149 Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + AL+ LG+ + +A A+ V K +++ +D ++R ALR + Sbjct: 150 ----------ILEALMGLGFSRGEAAMALGEVRSKGEDLPEDQLLLR-ALRVL 191 >gi|157413283|ref|YP_001484149.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9215] gi|167012662|sp|A8G4N2|RUVA_PROM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157387858|gb|ABV50563.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9215] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 96/196 (48%), Gaps = 9/196 (4%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKI---GDFCTLFVETHM 53 MI I G + ++ +VLI+ QG+ Y I L TL+++ Sbjct: 1 MISWINGELVETWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKKITLWIKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S + +F+ + SV+GVG+++ M +L++ + +E++++I Q+ K+I I Sbjct: 61 KEDSDLLFGFTSKDQKFFFIEILSVRGVGSQIGMSILNKFSISEIIKAIKTQDKKLICSI 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K S + ++ + + + + L +L Y Sbjct: 121 PGIGQKMSDRLILELKSKFK--SKIQIEEEKGQEEFEITNPEIYKLMEDLQLTLQSLNYK 178 Query: 174 QDQATTAVVSVLKKEK 189 + T + ++K+ Sbjct: 179 NKEIKTILPFLIKELG 194 >gi|332295726|ref|YP_004437649.1| Holliday junction ATP-dependent DNA helicase ruvA [Thermodesulfobium narugense DSM 14796] gi|332178829|gb|AEE14518.1| Holliday junction ATP-dependent DNA helicase ruvA [Thermodesulfobium narugense DSM 14796] Length = 194 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 20/209 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC-LGKIGDFCTLFVETHMRQDQIR 59 MI I GN+ G E+ ++++ G+ Y+I P L K GD L++ + + Sbjct: 1 MIAYIVGNLIGFIENSIIVENNGLGYLIKLPPYLLEKNKNKKGDIIELYISHQFIGESQQ 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISM 118 LFGF S D + F L + GVG ++A+ ++S T L+ + + + IPG+ Sbjct: 61 LFGFESISDLESFQKLLKIHGVGVKLALQIISSFKTNPTLILDLKNDHISSLKSIPGVGE 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A RI ELKG S V D + + A+ ALV+LG +A Sbjct: 121 KTAKRIFEELKGCFPEFSEVKFDDRAKL----------------AVDALVSLGVSFQKAK 164 Query: 179 TAVVSVLK--KEKNIADDSQIIRLALRAI 205 V+ LK ++ NI II +A++ I Sbjct: 165 EVVIDTLKDVQDLNIIKSEDIITMAIQRI 193 >gi|183220888|ref|YP_001838884.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910985|ref|YP_001962540.1| Holliday junction specific DNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|229560095|sp|B0SGZ5|RUVA_LEPBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560096|sp|B0SQF0|RUVA_LEPBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167775661|gb|ABZ93962.1| Holliday junction specific DNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779310|gb|ABZ97608.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 199 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 9/201 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + L D ++++V GV Y + P L C K+ + + R Sbjct: 1 MIASLRGKLLQLEIDRLVVEVSGVGYEVMIPFPLHLECKDKLNTEIYIHTFHSITDRGQR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S DR+ F L++S+ G+G A+ +LS A +L + + K + +IP + K Sbjct: 61 LFGFGSKKDRESFELIKSLHGIGELTALKILSFFQADDLYQIAKADDKKTLEKIPKVKGK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + +I+ E+K + N+ + A AL+ LG+ + AT Sbjct: 121 TSEKILFEIKQNLKKFEMFL-------NEGTTESSFVDRETDLATLALIQLGFDEKSATK 173 Query: 180 AVVSVLKKEKNIADDSQIIRL 200 V K + S I++ Sbjct: 174 QVADAKKLNPGL-SASDIVKQ 193 >gi|145652289|gb|ABP88205.1| hypothetical protein [Borrelia lonestari] Length = 195 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 22/211 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E V+I V + ++ + L ++ + + ++R+++I+L Sbjct: 1 MINKIYGKIVEKRESSVVIVVLPFEFEVFVSSFCIEKL-ELLENIEILTYIYLRENEIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ L+R+ F L +V G+G R A+ +LS I +E +I ++ ++I++I GI KI Sbjct: 60 FGFLNLLEREVFENLITVDGIGPRAALRILSGIKYSEFRNAIEREDIRLISKIKGIGNKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +LKGK I S + D+ + EQ+ VN+G+ + + Sbjct: 120 AGKIFLKLKGKFIK-SDKLDLDIKFKDLEQSI---------------VNMGFDRKLVISK 163 Query: 181 VVSVLKKEK--NIADDSQ---IIRLALRAIS 206 + +L ++ + + Q + R L+ +S Sbjct: 164 IKEILVTDEFLMLGEVEQEQFLFRETLKRLS 194 >gi|317177676|dbj|BAJ55465.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F16] Length = 183 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|291545898|emb|CBL19006.1| Holliday junction resolvasome, DNA-binding subunit [Ruminococcus sp. SR1/5] Length = 134 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 1/133 (0%) Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F LL V GVG + A+G+LS I+A EL +++ + K I++ PGI K A +++ ELK Sbjct: 1 MFKLLIGVNGVGPKGALGILSGISADELRFAVLSDDVKTISKAPGIGKKTAQKMILELKD 60 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190 K + + + + A+ ALV LGY A AV V ++ Sbjct: 61 KLKLEDAFEMKLAHQQEEAAEGASDLRDSRQEAVEALVALGYSSADALRAVRKV-PEDVP 119 Query: 191 IADDSQIIRLALR 203 D I+R AL+ Sbjct: 120 ADDVEAILRAALK 132 >gi|87308915|ref|ZP_01091053.1| probable holliday junction DNA helicase ruvA [Blastopirellula marina DSM 3645] gi|87288258|gb|EAQ80154.1| probable holliday junction DNA helicase ruvA [Blastopirellula marina DSM 3645] Length = 208 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI KI G + + E + + V Y + P L +G+ L ++ + + Sbjct: 1 MITKITGKVTSVSEAVLTLTVGAFEYEVLIPEFVRRQLQNHLGEEVALHTIEYLEGNPQQ 60 Query: 60 ------LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 + GF ++R++F L SV GVG R A+ + R E+ I Q++K ++ + Sbjct: 61 GRLTPRMIGFSDRIEREFFELFCSVDGVGVRKALRAMVR-PVQEVASLIEEQDTKGLSAL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ A RI+ +L+ K + +V + E + L +LG+ Sbjct: 120 PGVGPATADRIVAKLRRKVPKFALLVGR------SELGEDIAPRDVISETFDVLRSLGHS 173 Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198 + A + + L+++K D ++ Sbjct: 174 ESDARRLIDAALEEKKKYKDVETLL 198 >gi|205374298|ref|ZP_03227097.1| Holliday junction DNA helicase motor protein [Bacillus coahuilensis m4-4] Length = 148 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 4/148 (2%) Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 I L+GFL+ ++ FM L +V G+G + A+ +L + ++ +I +N + + PG+ Sbjct: 2 ISLYGFLTMEEKLLFMKLLNVTGIGPKGALAILGSGDVSGVIHAIEEENEAFLVKFPGVG 61 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +++ +LKGK + ++ E+ S F AI AL LGY + Sbjct: 62 KKTARQMILDLKGKLQDVVPDFFPNLF--QPEKEDTLSSDHFLNEAILALKALGYSDRE- 118 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V L+ E D + I+ L+ + Sbjct: 119 LKKVEPKLRNEPGKTSD-EYIKRGLQLL 145 >gi|213029463|ref|ZP_03343910.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 96 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 48/96 (50%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 Y ++ P+ L + G +F +R+D L+GF + +R F L GVG + Sbjct: 1 GYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPK 60 Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 LALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 96 >gi|301168494|emb|CBW28084.1| holliday junction DNA helicase ruvA [Bacteriovorax marinus SJ] Length = 216 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 97/221 (43%), Gaps = 23/221 (10%) Query: 1 MIGKIKGNIE-GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + + V++ G+ Y +Y + + G ++F+ +++ Sbjct: 1 MIGHLQGEVIFSDGVEAVVLTNSGIGYQVYI-----NQVLPEGKSASIFISHVIKEASEE 55 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +++ F LL SV+GVG + A ++ + +++ SI+ + K + + PGI K Sbjct: 56 LYGFKTIREKKLFELLTSVKGVGPKSAFSLVGALGVDQIINSILFDDKKSLTKAPGIGNK 115 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI----------------NA 163 A++++ +L+ K + + + I + + +A Sbjct: 116 AAAQMILDLQNKISKIKMYSNKSKGIQDVPAIQIPELSTSEQEESVHRESDNQELIIKDA 175 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 I A LG+ +++ +L I+ Q++ L L+ Sbjct: 176 IMACKELGFKEEKIIPLAQKILATN-EISKPEQLVHLVLKE 215 >gi|223889207|ref|ZP_03623796.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b] gi|223885456|gb|EEF56557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b] Length = 197 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ + D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANFN-LSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V GVG + A+ VLS I E E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKELIGVSGVGPKAALRVLSNIRYNEFKEAIDKEDIELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + S + + + + I V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINSELESTGLFRFKELEESI--------------VSMGFDRKIVNSK 165 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196 >gi|32473207|ref|NP_866201.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica SH 1] gi|81661574|sp|Q7USB0|RUVA_RHOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|32397886|emb|CAD73887.1| probable holliday junction DNA helicase ruvA [Rhodopirellula baltica SH 1] gi|327540460|gb|EGF27045.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica WH47] Length = 207 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58 MI I G + + E V+I Y +Y T L +IG+ L ++ + Sbjct: 1 MIVSIAGKLVQVGEISVIIQAAPFDYEVYVGDYTRRQLQNQIGNEVRLHTLDYIEGNAQG 60 Query: 59 -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 RL GF + +RQ+F L SV GVG + A+ + R EL I Q++K ++ + Sbjct: 61 GRLTPRLIGFSTLPERQFFDLFCSVDGVGVKKALRAMVR-PVKELAVLIEEQDAKTLSAL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI + +++ +L+ K + +V + + + ALV LG+ Sbjct: 120 PGIGPATSEKVIAKLRRKMPRFALMV-----AGGEVADAMEVESPIVSDTYDALVTLGHS 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198 + A + L K D ++ Sbjct: 175 ESDARKLIDETLATGKKFKDTESLL 199 >gi|283781353|ref|YP_003372108.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM 6068] gi|283439806|gb|ADB18248.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM 6068] Length = 210 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC---PIRTLSCLGKIGDFCTLFVETHMRQD- 56 MI +I + L +D ++ Y + RTLS +G +L ++ D Sbjct: 1 MITRITAKLIQLTDDAAILSAPPFDYEVLIAAVSRRTLSS--SVGQEISLHTIHYLDGDP 58 Query: 57 -----QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 RL GF+S+++R++F + SV GVGA+ A+ + R E+ I Q+++ ++ Sbjct: 59 SRGKVTPRLVGFVSEVEREFFEMFCSVDGVGAKKALRAMQR-PVQEISVMIEEQDAEGLS 117 Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 +PGI A RI+ +L+ K + +V ++ + + + + + AL LG Sbjct: 118 SLPGIGAATAERIIAKLRRKMSKFALLVARESAGETEIKRDVVELSF------EALRTLG 171 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQII 198 + + A + SVLK +K AD ++ Sbjct: 172 HSESDARKLLDSVLKSKKKFADVEAVL 198 >gi|217034714|ref|ZP_03440116.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10] gi|216942827|gb|EEC22324.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10] Length = 183 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKTRLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L + +Q + S V AL +LG+ + Sbjct: 120 ADKIMVDL------IGFFIQDETSPV-------------RNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSTETAIKEALQQL 181 >gi|216264161|ref|ZP_03436153.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a] gi|221217494|ref|ZP_03588965.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a] gi|224532548|ref|ZP_03673171.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23] gi|224533942|ref|ZP_03674527.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a] gi|225549276|ref|ZP_03770249.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a] gi|225549747|ref|ZP_03770712.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a] gi|226321147|ref|ZP_03796688.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805] gi|215980634|gb|EEC21441.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a] gi|221192772|gb|EEE18988.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a] gi|224512491|gb|EEF82869.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23] gi|224512945|gb|EEF83311.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a] gi|225369707|gb|EEG99155.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a] gi|225370134|gb|EEG99574.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a] gi|226233439|gb|EEH32179.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805] gi|312148088|gb|ADQ30747.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi JD1] gi|312149630|gb|ADQ29701.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi N40] Length = 197 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ + D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANFN-LSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V GVG R A+ VLS I E E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + S + + + + I V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINSELESTGLFRFKELEESI--------------VSMGFDRKIVNSK 165 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196 >gi|225552109|ref|ZP_03773049.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1] gi|225371107|gb|EEH00537.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1] Length = 197 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ + D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFDFELLVSAFCLANFN-LSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V GVG R A+ VLS I E E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + S + + + + I V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINSELESTGLFRFKELEESI--------------VSMGFDRKIVNSK 165 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196 >gi|315586830|gb|ADU41211.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter pylori 35A] Length = 183 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETGPACNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSTEAAIKEALQQL 181 >gi|325106603|ref|YP_004267671.1| Holliday junction DNA helicase subunit RuvA [Planctomyces brasiliensis DSM 5305] gi|324966871|gb|ADY57649.1| Holliday junction DNA helicase subunit RuvA [Planctomyces brasiliensis DSM 5305] Length = 208 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58 MI I+G + L E +++ ++ P L GKIG+ L ++ + Sbjct: 1 MISSIRGELLALEETSAFLNIGAFTIEVFIPDFVRRQLQGKIGEPIELRTMAYLDGNPQK 60 Query: 59 ------RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 RL GF S + +F L+ SV G+G + A+ + R E+ +I Q++K ++ Sbjct: 61 GGRMTPRLVGFTSKAELAFFELICSVDGLGIKKALAAIVR-PVREVAAAIEQQDTKTLST 119 Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 +PGI +A RI+ +L+ K + +V Q + M AL+ LG+ Sbjct: 120 LPGIGPAVAERIVAKLRRKMTRFALMVDQASGEAYEP------MNDQVSETYEALLALGH 173 Query: 173 GQDQATTAVVSVLKKEKNIADDSQII 198 D A + + LK K ++ Sbjct: 174 SADDAHNKIDTALKSGKKFKSVEDML 199 >gi|15594369|ref|NP_212157.1| Holliday junction DNA helicase RuvA [Borrelia burgdorferi B31] gi|195941763|ref|ZP_03087145.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi 80a] gi|218249661|ref|YP_002374557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7] gi|226322062|ref|ZP_03797587.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26] gi|3914937|sp|P70827|RUVA_BORBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725436|sp|B7J0W2|RUVA_BORBZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2687899|gb|AAC66409.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi B31] gi|218164849|gb|ACK74910.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7] gi|226232652|gb|EEH31406.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26] Length = 197 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ + D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANFN-LSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V GVG R A+ VLS I E E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDKEDIELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + S + + + + I V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINSELESTGLFRFKELEESI--------------VSMGFDRKIVNSK 165 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196 >gi|207092382|ref|ZP_03240169.1| Holliday junction DNA helicase motor protein [Helicobacter pylori HPKX_438_AG0C1] Length = 183 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +R+D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLEAGQKVRLKILQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENKPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181 >gi|224534918|ref|ZP_03675487.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S] gi|224513858|gb|EEF84183.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S] Length = 196 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + I L K+ D LF + R+++++L Sbjct: 1 MINKIYGKVIEKKESSLVLMTAVFEFEILVSAFCLDNF-KLSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ +++A+I GI K+ Sbjct: 60 FGFLNSDERETFKRLIGVSGIGPRAALRVLSSIRYNEFKDAIDREDIELVAKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + + E++ V++G+ + ++ Sbjct: 120 AGKMFLHLQGKLLINNELESSLFGFKELEESI---------------VSMGFDRRIVSSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEAFNLVEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|317180262|dbj|BAJ58048.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F32] Length = 183 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L + +Q + S AL +LG+ + Sbjct: 120 ADKIMVDL------IGFFIQDETSPT-------------RNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEVAIKEALQQL 181 >gi|254779490|ref|YP_003057595.1| Holliday junction DNA helicase RuvA [Helicobacter pylori B38] gi|254001401|emb|CAX29394.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pylori B38] Length = 183 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L ++G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QVGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSIETAIKEALQQL 181 >gi|210135073|ref|YP_002301512.1| Holliday junction DNA helicase RuvA [Helicobacter pylori P12] gi|210133041|gb|ACJ08032.1| holliday junction DNA helicase [Helicobacter pylori P12] Length = 183 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181 >gi|308063716|gb|ADO05603.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Sat464] Length = 183 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQTGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|308183035|ref|YP_003927162.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4] gi|308065220|gb|ADO07112.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4] Length = 183 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|219684886|ref|ZP_03539828.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr] gi|219671831|gb|EED28886.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr] Length = 196 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYARENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + + E++ V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINNELESSLFGFKELEESI---------------VSMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|297380083|gb|ADI34970.1| Holliday junction DNA helicase RuvA [Helicobacter pylori v225d] Length = 183 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L + +Q + S V AL +LG+ + Sbjct: 120 ADKIMVDL------IGFFIQDETSPV-------------RNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEVAIKEALQQL 181 >gi|317182188|dbj|BAJ59972.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F57] Length = 183 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETGPMRNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|109947771|ref|YP_664999.1| Holliday junction DNA helicase RuvA [Helicobacter acinonychis str. Sheeba] gi|123066165|sp|Q17WH6|RUVA_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|109714992|emb|CAK00000.1| holliday junction DNA helicase [Helicobacter acinonychis str. Sheeba] Length = 183 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + V I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MTVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTASML-QTGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L + +Q + V+ A AL +LG+ + Sbjct: 120 ADKIMVDL------IGFFIQDETKPVHN-------------EAFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +LKK K + I+ AL+ + Sbjct: 157 INPILKKLKPNLSVEEAIKEALQQL 181 >gi|51598286|ref|YP_072474.1| Holliday junction DNA helicase RuvA [Borrelia garinii PBi] gi|81610281|sp|Q662Y9|RUVA_BORGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|51572857|gb|AAU06882.1| Holliday junction DNA helicase [Borrelia garinii PBi] Length = 196 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYARENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I + E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNDFKEAIDREDVELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + + E++ V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINNELESSLFGFKELEESI---------------VSMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|188527709|ref|YP_001910396.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Shi470] gi|229560035|sp|B2UU34|RUVA_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188143949|gb|ACD48366.1| Holliday junction DNA helicase motor protein [Helicobacter pylori Shi470] gi|308062206|gb|ADO04094.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Cuz20] Length = 183 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|217032932|ref|ZP_03438407.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128] gi|298736165|ref|YP_003728691.1| Holliday junction ATP-dependent DNA helicase RuvA [Helicobacter pylori B8] gi|216945342|gb|EEC24014.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128] gi|298355355|emb|CBI66227.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pylori B8] Length = 183 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L ++G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLEVGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKKLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181 >gi|219685405|ref|ZP_03540224.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04] gi|219673178|gb|EED30198.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04] Length = 196 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + +++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYAGENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ +++++I GI K+ Sbjct: 60 FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + + E++ V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINNDLESSLFGFKELEESI---------------VSMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|261838266|gb|ACX98032.1| Holliday junction DNA helicase [Helicobacter pylori 51] Length = 183 Score = 140 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPKLSTEAAIKEALQQL 181 >gi|308184664|ref|YP_003928797.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180] gi|308060584|gb|ADO02480.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180] Length = 183 Score = 140 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPVRNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INQVLKTLKPHLSIEAAIKEALQQL 181 >gi|167005424|ref|ZP_02271182.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81-176] Length = 135 Score = 140 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKG 130 A RI+ EL Sbjct: 120 SAKRIIVELSD 130 >gi|317012687|gb|ADU83295.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Lithuania75] Length = 183 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181 >gi|108563288|ref|YP_627604.1| Holliday junction DNA helicase RuvA [Helicobacter pylori HPAG1] gi|123073768|sp|Q1CSZ2|RUVA_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|107837061|gb|ABF84930.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1] Length = 183 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLETGQKVRLKILQVIKEDANLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181 >gi|15611882|ref|NP_223533.1| Holliday junction DNA helicase RuvA [Helicobacter pylori J99] gi|6685958|sp|Q9ZKW9|RUVA_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|4155386|gb|AAD06396.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobacter pylori J99] Length = 183 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QTGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INPVLKTLKPHLSIEAAIKEALQQL 181 >gi|251771977|gb|EES52549.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum ferrodiazotrophum] Length = 211 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 85/204 (41%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ--DQI 58 MI ++ G IE D+V++ V Y + +S L +L + + Sbjct: 1 MIARLFGTIEETGSDWVILRAGAVGYRVLLSPYAMSQLSAREKEISLRTFLLWGEHQETP 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L GFL + + F ++ + G+G A+ ++S + E+I + + ++ G+ Sbjct: 61 LLVGFLDAAEEELFHEIRRIGGLGPTKAIRMIS-LPPGSFWEAIASGDVGRLRKLKGVGE 119 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----LVN-LGYG 173 A ++++EL+ + SL S D ++ + + P A++A LV G+ Sbjct: 120 TTAKKLVSELRDRVPSLISASPAD--SLSSGGSPLPEGPLSPRGAVAAVREVLVAQFGHS 177 Query: 174 QDQATTAVVSVLKKEKNIADDSQI 197 +A + L + + + ++ Sbjct: 178 PSEADAMIRRALSRNPSARTEEEL 201 >gi|317011094|gb|ADU84841.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SouthAfrica7] Length = 183 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKKLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPVYNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +LKK K + I+ AL+ + Sbjct: 157 INPILKKLKPNLGIEEAIKEALQQL 181 >gi|1941919|emb|CAA63622.1| orf4 [Bacillus subtilis subsp. subtilis str. 168] Length = 105 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERSQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK 108 +GF + ++ F L +V G+G + A+ +L ++++I ++ Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEA 105 >gi|15645501|ref|NP_207676.1| Holliday junction DNA helicase RuvA [Helicobacter pylori 26695] gi|3122834|sp|O25549|RUVA_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2314020|gb|AAD07932.1| Holliday junction DNA helicase (ruvA) [Helicobacter pylori 26695] Length = 183 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTAALL-EAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181 >gi|332673720|gb|AEE70537.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter pylori 83] Length = 183 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181 >gi|261839678|gb|ACX99443.1| Holliday junction DNA helicase motor protein [Helicobacter pylori 52] Length = 183 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +R S L ++G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMR-ASALLQMGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPACNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181 >gi|160902900|ref|YP_001568481.1| helix-hairpin-helix DNA-binding motif-containing protein [Petrotoga mobilis SJ95] gi|254767380|sp|A9BIJ5|RUVA_PETMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160360544|gb|ABX32158.1| helix-hairpin-helix motif [Petrotoga mobilis SJ95] Length = 190 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI IE ++ VLI + + Y + + K GD F + + L Sbjct: 1 MIRKINATIEDFEDEKVLIKIGVLTLEAYPSLNVIRYF-KKGDQYEFFASLEISEWNTSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F ++R F L+ V +G R+A +L + A E ++ I Q++ +++ +PGI K Sbjct: 60 YIFKDKIERDVFESLKKVSKIGPRIASKILRKTDAEEFIQMINSQDTALLSSLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+++EL S + + AI AL LG+ + + Sbjct: 120 AERLISEL-----------SNSFSAYSTGADTQSYGNNNLKEAIEALETLGFQRYEIMKV 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +II+ L + Sbjct: 169 IGQL---DLEDLKTEEIIKECLTRL 190 >gi|224532061|ref|ZP_03672693.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116] gi|224511526|gb|EEF81932.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116] Length = 196 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + R+++++L Sbjct: 1 MINKIHGKVVEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ +++A+I GI K+ Sbjct: 60 FGFLNSDERETFKGLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVAKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + + E++ +++G+ + + Sbjct: 120 AGKMFLHLQGKLLINNELESNLFRFKELEESI---------------ISMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 165 LKEAYNLVEFSNLKDSEKEQFLFKEVLKRIS 195 >gi|218780990|ref|YP_002432308.1| DNA recombination protein RuvA domain I [Desulfatibacillum alkenivorans AK-01] gi|254766956|sp|B8FBT7|RUVA_DESAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218762374|gb|ACL04840.1| DNA recombination protein RuvA domain I [Desulfatibacillum alkenivorans AK-01] Length = 204 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 11/201 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 MIG ++G I + ++I GV Y + P + + K GD L++ H + Q + Sbjct: 1 MIGYLEGKILYRQGERIMILAGGVGYEVLLPSVVSASMTKGPGDETGLYIYFHQTEKQPK 60 Query: 60 --LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L GF S +R++F SV+ +G A+ L I E+ +I ++S + ++ GI Sbjct: 61 PVLIGFNSLEEREFFERFISVEAIGPIKAVSALC-IPIGEIAAAIENKDSGALRKLKGIG 119 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQ 176 + A +I+ L+GK + + + + + + + LVN LG+ + Sbjct: 120 ARTADKIIATLRGKMAVFAGEHGGEPAGPAPVEENFHLL------VLDVLVNQLGHKAAE 173 Query: 177 ATTAVVSVLKKEKNIADDSQI 197 A + +K+ I+ ++ Sbjct: 174 AKELINQAIKRNPAISSPEEL 194 >gi|296122693|ref|YP_003630471.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM 3776] gi|296015033|gb|ADG68272.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM 3776] Length = 207 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI +I G + L ED V +++ Y + P L K+G+ +L ++ + + Sbjct: 1 MITRITGKLVRLSEDIVRLEIGAFEYEVLVPEFVRRQLQPKLGEVVSLCTIDYLDGNPQQ 60 Query: 60 ------LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 L GFLS+ + ++F ++ SV G+G + + + R E+ E+I Q+ K + + Sbjct: 61 GRLVPRLAGFLSETELEFFEMICSVDGMGVKKTLRAMVR-PVREIAEAIEEQSIKELTLL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ +A RI+ +L+ K + +V +++ ++ + A AL+ LG+ Sbjct: 120 PGVGPAMAERIVAKLRRKMTKFALMVAREVPREADVDRNVLT------EAYEALMALGHS 173 Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198 +A + V ++K D ++ Sbjct: 174 SIEARDKIDQVASQKKKFKDVQDVL 198 >gi|320102187|ref|YP_004177778.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644] gi|319749469|gb|ADV61229.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644] Length = 232 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 95/215 (44%), Gaps = 18/215 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQI- 58 MI ++G +E + ++ ++ V ++ T + K+G+ L+ ++ + Sbjct: 1 MITLVRGILERVGQEEAILSVPPWEIEVWVTELTRRQIQTKLGEEIRLYTILNIEGNATM 60 Query: 59 -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 RL GFLS ++R++F + SV GVG R A+ + + +L +I Q+ +A Sbjct: 61 GRMSPRLIGFLSPVEREFFEVFCSVDGVGVRKALRAICQ-PVKDLARTIQDQDVATLATF 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVN----------KEQAHICSMPSFAINA 163 PG+ +A RI+ +L+ K + + + + + P + Sbjct: 120 PGVGEALAERIVAKLRRKVGKFALALGDPRVPASRFTASDLEDAPHSSSNATDPEIVRDV 179 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 +AL+++G+ + QA A+ L +K + +I Sbjct: 180 YAALLSVGHTETQARQAIDQALSSKKAFRSVADMI 214 >gi|307637571|gb|ADN80021.1| Holliday junction DNA helicase [Helicobacter pylori 908] gi|325996162|gb|ADZ51567.1| Holliday junction DNA helicase [Helicobacter pylori 2018] gi|325997758|gb|ADZ49966.1| Holliday junction DNA helicase [Helicobacter pylori 2017] Length = 183 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALTILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INPVLKTLKPNLSIEAAIKEALQQL 181 >gi|111114845|ref|YP_709463.1| Holliday junction DNA helicase RuvA [Borrelia afzelii PKo] gi|216264081|ref|ZP_03436075.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1] gi|123047085|sp|Q0SPE1|RUVA_BORAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110890119|gb|ABH01287.1| Holliday junction DNA helicase [Borrelia afzelii PKo] gi|215980125|gb|EEC20947.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1] Length = 196 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + ++++++L Sbjct: 1 MINKIYGKVIEKKESSLVLMTAVFEFELLVSAFCLANF-KLLDKVELFTYLYTKENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ ++IA+I GI K+ Sbjct: 60 FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDIELIAKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + +N E +I V++G+ + + Sbjct: 120 AGKMFLHLQGKLL------------INNELESSLFRFKELEESI---VSMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEAFNLVEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|224370135|ref|YP_002604299.1| RuvA [Desulfobacterium autotrophicum HRM2] gi|259495639|sp|C0QKP5|RUVA_DESAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|223692852|gb|ACN16135.1| RuvA [Desulfobacterium autotrophicum HRM2] Length = 214 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQI 58 MIG ++G + L D VL+ V V Y I P ++ + +F L++ H + D+ Sbjct: 1 MIGFLQGKVLNLEADNVLLLVNQVGYEILLPATVVASVQNKLSDEFLNLYIYYH-QTDRQ 59 Query: 59 ---RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 L GF S ++ +F L +V +G A + + + + +I ++ +A + G Sbjct: 60 PKPVLIGFDSAEEKDFFQLFITVDAIGPLKAAKAME-HSVSTIARAIENKDVAFLATLKG 118 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALV-NLGY 172 I + A +I+ L GKA + + + S+P + LV LG+ Sbjct: 119 IGRRTAQKIVAALHGKAGRFLLAADEAGAGDGVSKTGTPSLPIQKAIDQVVDVLVQQLGH 178 Query: 173 GQDQATTAVVSVLKKEKNIADDSQI 197 A V L ++ I + Sbjct: 179 TPSAAKMMVAQALDRDPEIMTPEAL 203 >gi|208434791|ref|YP_002266457.1| Holliday junction DNA helicase [Helicobacter pylori G27] gi|226698733|sp|B5Z7P2|RUVA_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|208432720|gb|ACI27591.1| Holliday junction DNA helicase [Helicobacter pylori G27] Length = 183 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALETHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPSLSIEAAIKEALQQL 181 >gi|323465932|gb|ADX69619.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus helveticus H10] Length = 140 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%) Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ D+ F+ L SV G+G + A+ +++ A L E+I K + + PG+ K Sbjct: 2 YGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 61 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK ++ ++++ ++P +A+ AL+ LGY Q + Sbjct: 62 ASQIVLDLKGKLRDY-------VARLDRQDEEQGNIPPALNDALLALIALGYTQKEVDRI 114 Query: 181 VVSVLKKEKNIAD 193 + + + AD Sbjct: 115 TPKLEEVNADTAD 127 >gi|317014289|gb|ADU81725.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Gambia94/24] Length = 183 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALL-QAGQKARLKILQVIKEDANLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INPVLKTLKPHLSIEAAIKEALQQL 181 >gi|255027975|ref|ZP_05299961.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-003] Length = 110 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLT 110 >gi|26553733|ref|NP_757667.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2] gi|38258589|sp|Q8EWC5|RUVA_MYCPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|26453740|dbj|BAC44071.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2] Length = 219 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--- 57 MI I G I +Y++++ Y ++ + + +FV T + Q+ Sbjct: 1 MIEYIIGKISYKNNNYLILENNFKGYKLFMSDP---NIFEENSSAKIFVYTKIFQNNKNN 57 Query: 58 --IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 +GF + ++ +F L +V G+G + ++ +L L E I ++ + ++ + G Sbjct: 58 FLFEYYGFKTLREKIFFENLLTVNGIGPKTSLTILRN-DLNLLKELIRNEDIESLSVLEG 116 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A I++ L K + + + + + + + + +SAL LGY ++ Sbjct: 117 FTNKTALSIVSALSYKLKN-ERISEYNNDVNHSSINQQSNSYNPVPDLVSALKALGYKKN 175 Query: 176 QATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206 A+ ++ + N+++D S +I A++ IS Sbjct: 176 MIEKAINLLIPQLSNVSEDQISDLISQAIKIIS 208 >gi|161936257|ref|YP_115931.2| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 232] Length = 221 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 24/216 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ G Y+IY P + +++ H +GF S Sbjct: 7 GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ Sbjct: 64 RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170 E + K + + N E A I S + +A L L Sbjct: 123 EFQKKYERFNENHKNQTEETNPETQEKELEKEDDLADITIQKSNLEDKTAANLEDTLKML 182 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 G+ Q A+ V E + +I A++ IS Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214 >gi|72080739|ref|YP_287797.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448] gi|90135315|sp|Q4A7W5|RUVA_MYCH7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71913863|gb|AAZ53774.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448] Length = 221 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ G Y+IY P + +++ H +GF S Sbjct: 7 GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ Sbjct: 64 RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170 E + K + + N++ A I S + +A L L Sbjct: 123 EFQKKYERFNENHKNQTEETNQDSQEKELEKNDDLADITIQKSNLEDKTAANLEDTLKML 182 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 G+ Q A+ V E + +I A++ IS Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214 >gi|312601377|gb|ADQ90632.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma hyopneumoniae 168] Length = 221 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 24/216 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ G Y+IY P + + + +++ H +GF S Sbjct: 7 GKIVSKNKNYLILENHGSGYLIYVPR--IDRFNR-DENRKIYIYEHENDYTKITYGFASF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ Sbjct: 64 RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170 E + K + + N++ A I S + +A L L Sbjct: 123 EFQKKYERFNENHKNQAEETNQDTQEKELEKKDDLADITIQKSNLEDRTAANLEDTLKML 182 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 G+ Q A+ V E + +I A++ IS Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214 >gi|71893769|ref|YP_279215.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J] gi|90135325|sp|Q4A9R7|RUVA_MYCHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71851896|gb|AAZ44504.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J] Length = 221 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ G Y+IY P + +++ H +GF S Sbjct: 7 GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ Sbjct: 64 RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170 E + K + + N++ A I S + +A L L Sbjct: 123 EFQKKYERFNENHKNQTEETNQDSQEKELEKKDDLADITIQKSNLEDKTAANLEDTLKML 182 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 G+ Q A+ V E + +I A++ IS Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214 >gi|203287496|ref|YP_002222511.1| Holliday junction DNA helicase [Borrelia recurrentis A1] gi|226698726|sp|B5RQK6|RUVA_BORRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|201084716|gb|ACH94290.1| Holliday junction DNA helicase [Borrelia recurrentis A1] Length = 196 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E ++I + I L ++ + + H R D ++L Sbjct: 1 MINKIYGKIVDKKESSIIILAFPFEFEILVSSFCKMEL-RLLEDVEILTYFHFRDDDVKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G + A+ +LS I +I ++ +I+++ GI KI Sbjct: 60 FGFLNISEREVFENLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLISKVKGIGNKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +L+GK + + EQ+ VN+G+ + A Sbjct: 120 AGKIFLKLRGKLVKGDESSSYMLKFKELEQSI---------------VNMGFDRKLVVVA 164 Query: 181 VVSVLKKEK----NIADDSQ-IIRLALRAIS 206 ++ +K A+ Q + L+ +S Sbjct: 165 FREIMLSDKFLILKEAEQEQFLFTETLKRLS 195 >gi|203283953|ref|YP_002221693.1| Holliday junction DNA helicase [Borrelia duttonii Ly] gi|226698725|sp|B5RLN1|RUVA_BORDL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|201083396|gb|ACH92987.1| Holliday junction DNA helicase [Borrelia duttonii Ly] Length = 196 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E ++I + I L ++ + + H R D ++L Sbjct: 1 MINKIYGKIVDKKESSIIILAFPFEFEILVSSFCKMEL-RLLEDVEILTYFHFRDDDVKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G + A+ +LS I +I ++ +I+++ GI KI Sbjct: 60 FGFLNISEREVFEDLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLISKVKGIGNKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +L+GK + + EQ+ VN+G+ + A Sbjct: 120 AGKIFLKLRGKLVKGDESSSYMLKFKELEQSI---------------VNMGFDRKLVVVA 164 Query: 181 VVSVLKKEK----NIADDSQ-IIRLALRAIS 206 ++ +K A+ Q + L+ +S Sbjct: 165 FREIMLSDKFLILKEAEQEQFLFTETLKRLS 195 >gi|206603017|gb|EDZ39497.1| probable Holliday junction DNA helicase (RuvA) [Leptospirillum sp. Group II '5-way CG'] Length = 208 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 80/202 (39%), Gaps = 9/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQ--D 56 MI ++ G E+ V++ V Y ++ + L + L ++ + + Sbjct: 1 MIARLWGVPVEWEEESVILRAGDVGYRVHLSPCSHQKLRSRPEGLVLELLIQHFWNEHLE 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L GF ++ F L+ V G+G A+ +L+ I + + + ++ + + G+ Sbjct: 61 APLLAGFPDPEEQTLFNQLRKVPGLGPLSALRLLA-IPVGDFLTIVRDNDAGRLKGLKGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-NLGYGQD 175 K A +I+ EL+G ++ K S+ + LV G+ Sbjct: 120 GEKTARKILGELRGHVDWIAESTSGLSPASGKSPESPASLARSVQDV---LVRQFGHTPQ 176 Query: 176 QATTAVVSVLKKEKNIADDSQI 197 +A V L+++ +I+ ++ Sbjct: 177 EAQRLVSEALRRQPSISSMEEL 198 >gi|254821998|ref|ZP_05226999.1| Holliday junction DNA helicase RuvA [Mycobacterium intracellulare ATCC 13950] Length = 105 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIAAVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106 +GF R F+ L SV GVG R+AM L+ A L +++ + Sbjct: 60 YGFTDTDTRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGD 105 >gi|72382108|ref|YP_291463.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str. NATL2A] gi|90135557|sp|Q46L68|RUVA_PROMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72001958|gb|AAZ57760.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus marinus str. NATL2A] Length = 224 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 3/167 (1%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y I + + ++ + L++ R+D L+GF+ R F + SV G+G ++ Sbjct: 30 YEIQLLPKQIDK-AEVLNEFELWIHQIDREDGTSLYGFIEVNQRDLFREIISVNGIGPQI 88 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 M +L +LV +I + S ++ + GI +IA R++ EL+ K + Sbjct: 89 GMAMLEEFEVPQLVNAIENKESNLLTKTQGIGKRIAERLIVELRNKLQRFTD--NDKTIH 146 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 NK + L +LGY ++ ++ + EK + Sbjct: 147 ENKNDIEANQFSKYIDEIYLILNSLGYVDNEIKESIKIITINEKENS 193 >gi|260222298|emb|CBA31722.1| Holliday junction ATP-dependent DNA helicase ruvA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 139 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query: 53 MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 +R+D L+GF + +R+ F L + GVG R A+ VLS + +L +++ LQ + + + Sbjct: 2 VREDAQILYGFATSTEREAFRELIKISGVGPRTALSVLSGMDVGDLAQAVTLQEAGRLIK 61 Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 +PGI K A R +++ A + ++ + + AL+ LGY Sbjct: 62 VPGIGKKTAER-------------LLLELKGKLGADLGAPLGAVGDAQSDILQALLALGY 108 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + LK S I+LAL++++ Sbjct: 109 S----EKEAAAALKALPKDVGVSDGIKLALKSLA 138 >gi|124025644|ref|YP_001014760.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. NATL1A] gi|166230583|sp|A2C1Y5|RUVA_PROM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123960712|gb|ABM75495.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. NATL1A] Length = 224 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y I + + ++ + L++ R+D L+GF+ R F + SV G+G ++ Sbjct: 30 YEIQLLPKQIDK-AEVLNEFELWIHQIDREDGTSLYGFIEVNQRDLFREIISVNGIGPQI 88 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 M +L +LV +I + S ++ + GI +IA R++ EL+ K + Sbjct: 89 GMAMLEEFEVPQLVNAIENKESNLLTKTQGIGKRIAERLIVELRNKLQRFTD--NDKTIH 146 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 NK+ + L +LGY ++ ++ + EK + Sbjct: 147 ENKKGIEANQFSKYIDEIYLILNSLGYVDNEIKESIKIITINEKENS 193 >gi|1620916|emb|CAA70096.1| specificity factor of RuvAB helicase [Borrelia burgdorferi] Length = 178 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 20/186 (10%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 + + L+ + D LF + R+++++LFGFL+ +R+ F L V GVG R Sbjct: 7 FELLVSAFCLANFN-LSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRA 65 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 A+ VLS I E E+I ++ +++++I GI K+A ++ L+GK + S + + Sbjct: 66 ALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLFR 125 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LKKEKNIADDSQ---IIRL 200 + + I V++G+ + + + L + N+ D + + + Sbjct: 126 FKELEESI--------------VSMGFDRKIVNSKIREAFNLAEFANLKDSEKEQFLFKE 171 Query: 201 ALRAIS 206 L+ IS Sbjct: 172 VLKRIS 177 >gi|153827628|ref|ZP_01980295.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae MZO-2] gi|149737900|gb|EDM52805.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae MZO-2] Length = 120 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 10/125 (8%) Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMS 144 + + +LS +TA + V + ++ + ++PG+ K A R++ E+K + D+ Sbjct: 1 MGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWG---AGDLF 57 Query: 145 CVNKEQAHICSMP----SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 + A + S P + A+SAL+ LGY QA+ AV V K + ++IR Sbjct: 58 TPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASKAVSQVAKAGMS---SEELIRE 114 Query: 201 ALRAI 205 AL+++ Sbjct: 115 ALKSM 119 >gi|124516217|gb|EAY57725.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum rubarum] Length = 208 Score = 127 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 82/202 (40%), Gaps = 9/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQ--D 56 MI ++ G E+ V++ V Y ++ + L + L ++ + + Sbjct: 1 MIARLWGVPVEWEEESVILRAGDVGYRVHLSPCSHQKLRSRPEGLVLELLIQHFWNEHLE 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L GF ++ F L+ V G+G A+ +L+ I + + + ++ + + G+ Sbjct: 61 APLLAGFPDPDEQTLFNQLRKVPGLGPLSALRLLA-IPVGDFLTIVRDNDAGRLKGLKGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-NLGYGQD 175 K A +I+ EL+G+ ++ + K S+ + LV G+ Sbjct: 120 GEKTARKILGELRGQVDWIAESSTVITASSGKGPDTPASLARSVQDV---LVRQFGHSPL 176 Query: 176 QATTAVVSVLKKEKNIADDSQI 197 +A V L+++ +I+ ++ Sbjct: 177 EAQRLVSEALRRQPSISSMEEL 198 >gi|15829128|ref|NP_326488.1| Holliday junction DNA helicase motor protein [Mycoplasma pulmonis UAB CTIP] gi|20455257|sp|Q98PR2|RUVA_MYCPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|14090072|emb|CAC13830.1| HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycoplasma pulmonis] Length = 197 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 85/201 (42%), Gaps = 18/201 (8%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I + + Y++ + Y I T + + L++ + Q L+GF Sbjct: 7 GKIIHVNKKYIIFESDSAGYTINI---TRAENFEKDRTLKLYIYELSNEYQKTLYGFTHF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+ G+G R+A+ +L+ ++ I N + +++ P I++K +I+ Sbjct: 64 KERVLFEDLISINGIGPRIALILLN-DGWEKIASLIANGNWETLSRYPYINVKNCHQIIF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 EL+ K + K++ + +A L LG+ ++Q A+ S Sbjct: 123 ELQNKWAKF----------LEKDEKVPSANIQNISDATETLKMLGFKREQIKYALESANL 172 Query: 187 KEKNIADDSQIIRLALRAISC 207 ++ D ++ A++ IS Sbjct: 173 QD----DVETLVENAIKKIST 189 >gi|313678674|ref|YP_004056414.1| Holliday junction DNA helicase [Mycoplasma bovis PG45] gi|312950114|gb|ADR24709.1| Holliday junction DNA helicase [Mycoplasma bovis PG45] Length = 198 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 17/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G I + ++ + QG+ Y + P + C L++ + Q Sbjct: 1 MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVDVKQKCKLYLFEIKNEYQYAT 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +R F+ L S+ G+G + A +L+ ++ I N + + +IP ++ ++ Sbjct: 58 YAFKDFKERLLFVDLISLNGIGPKAAFNILN-FGFEKVSALIAEGNVEALIKIPYLNPRM 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ EL+ K + KE A I + A L LG+ Q A Sbjct: 117 ARLIVAELQAKWSKM---------ISPKEVAKISVSTNTISEAKETLKMLGFKTKQIDNA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + V + D ++I A++ IS Sbjct: 168 LAKVSTTD----DIEKMIEEAIKLIST 190 >gi|297520077|ref|ZP_06938463.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50] Length = 108 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 96 TELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS 155 + V ++ + + ++PGI K A R++ E+K + L + + + + Sbjct: 1 QQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPA 60 Query: 156 MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A++ALV LGY +A+ V + + + A +IR ALRA Sbjct: 61 TNDAEQEAVAALVALGYKPQEASRMVSKIARPD---ASSETLIREALRA 106 >gi|304373060|ref|YP_003856269.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma hyorhinis HUB-1] gi|304309251|gb|ADM21731.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma hyorhinis HUB-1] Length = 213 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 90/202 (44%), Gaps = 12/202 (5%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ V ++IY P + + +++ + + +GF + Sbjct: 7 GKIVSKSKNYLILEQNYVGHLIYVPNIDRF---EKDESKKIYIYKYENEYSKTTYGFENF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L SVQG+G + A+ +L++ + I + K I++ P +++K A +I+ Sbjct: 64 RERILFEDLISVQGIGPKTAIAILNQ-GWETAMSYIADGDWKRISEFPYLNVKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMS---CVNKEQAHICSMPSFAINAIS-----ALVNLGYGQDQAT 178 E + K I + Q+ ++ +N E+ S + + I+ L LG+ + Q Sbjct: 123 EFQNKYIKIFQNYQKTLNKDKVINVEEEVTFSSKTVLEDKIAKELEDTLKILGFQKKQIN 182 Query: 179 TAVVSVLKKEKNIADDSQIIRL 200 A+ V + I+L Sbjct: 183 YALSKVQANNDFELLVEEAIKL 204 >gi|291320151|ref|YP_003515412.1| Holliday junction DNA helicase RuvA [Mycoplasma agalactiae] gi|290752483|emb|CBH40455.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae] Length = 198 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 17/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G I + ++ + QG+ Y + P +I C L++ + Q Sbjct: 1 MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVEIKQKCKLYLFEIKNEYQYAT 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +R F+ L S+ G+G R A +L+ ++ I N++ + +IP ++ ++ Sbjct: 58 YAFKDFKERLLFVDLISLNGIGPRAAFNILN-FGFEKVAALIAEGNAEALIEIPYLNPRM 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ EL+ K + K+ A I + L LG+ Q A Sbjct: 117 ARLIVAELQAKWSKM---------ISPKDAAKINETTNALSEVKETLKMLGFKTKQIDGA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + + + D ++I A++ +S Sbjct: 168 LSKI----SSTDDVEKMIEEAIKLMST 190 >gi|330723322|gb|AEC45692.1| Holliday junction DNA helicase RuvA [Mycoplasma hyorhinis MCLD] Length = 213 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 90/202 (44%), Gaps = 12/202 (5%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ V ++IY P + + +++ + + +GF + Sbjct: 7 GKIVSKSKNYLILEQNYVGHLIYVPNIDRF---EKDESKKIYIYKYENEYSKTTYGFENF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L SVQG+G + A+ +L++ + I + K I++ P +++K A +I+ Sbjct: 64 RERILFEDLISVQGIGPKTAIAILNQ-GWETAMSYIADGDWKKISEFPYLNVKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMS---CVNKEQAHICSMPSFAINAIS-----ALVNLGYGQDQAT 178 E + K I + Q+ ++ +N E+ S + + I+ L LG+ + Q Sbjct: 123 EFQNKYIKIFQNYQKTLNKDKVINVEEEVTFSSKTVLEDKIAKELEDTLKILGFQKKQIN 182 Query: 179 TAVVSVLKKEKNIADDSQIIRL 200 A+ V + I+L Sbjct: 183 YALSKVQANNDFELLVEEAIKL 204 >gi|254994714|ref|ZP_05276904.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Mississippi] Length = 138 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 18/148 (12%) Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF + ++ +L V GV + AM +L +T ++ +I+ ++ + ++ G+ Sbjct: 8 QLYGFANREEQNCMRMLIKVSGVNYKTAMAILDVLTPEQVFSAIVSEDRAAL-KVGGVGE 66 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ SRI++EL + E + A++AL++LGY + A Sbjct: 67 KLISRIISELTPQVQKF-------------ELNRFAATTRTDSEAVAALLSLGYERTAAL 113 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V +R AL +S Sbjct: 114 GALQKV----GVCDSTEDAVRRALLELS 137 >gi|224540664|ref|ZP_03681203.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus DSM 14838] gi|224517736|gb|EEF86841.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus DSM 14838] Length = 82 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVG 82 +GF +R+ F+LL SV G+G Sbjct: 60 YGFADKQERELFLLLISVSGIG 81 >gi|308189833|ref|YP_003922764.1| Holliday junction DNA helicase [Mycoplasma fermentans JER] gi|319777048|ref|YP_004136699.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|238809832|dbj|BAH69622.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624575|gb|ADN68880.1| Holliday junction DNA helicase [Mycoplasma fermentans JER] gi|318038123|gb|ADV34322.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] Length = 200 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 19/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ G I ++ + QGV Y I P + L++ L Sbjct: 1 MVLYRIGEIVYKNNQNLIFESQGVGYSIIFPDHAR---VEAKQKMKLYLYEIRNDYTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R FM L ++ G+G RVA +L++ ++ I L + +IP I+ +I Sbjct: 58 YGFKDFKERLLFMDLINLNGIGPRVAFNILNQ-GWEKVASLIALGKVDHLIEIPYINPRI 116 Query: 121 ASRIMT-ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL+ K +++ ++ + A L LG+ Q + Sbjct: 117 A-RIVVGELQDKWAKITN---------TQDAQKQVKNSNLLSEAKETLKMLGFKAAQIDS 166 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V + D +I A++ IS Sbjct: 167 ALTKVELNQ----DVESMIEEAIKFIS 189 >gi|148377489|ref|YP_001256365.1| Holliday junction DNA helicase motor protein [Mycoplasma agalactiae PG2] gi|229560106|sp|A5IY12|RUVA_MYCAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148291535|emb|CAL58921.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae PG2] Length = 198 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 17/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G I + ++ + QG+ Y + P +I C L++ + Q Sbjct: 1 MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVEIKQKCKLYLFEIKNEYQYAT 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +R F+ L S+ G+G R A +L+ ++V I N++ + +IP ++ ++ Sbjct: 58 YAFKDFKERLLFVDLISLNGIGPRAAFNILN-FGFEKVVALIAEGNAEALIEIPYLNPRM 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ EL+ K + K+ A I + L +G+ Q A Sbjct: 117 ARLIVAELQAKWSKM---------ISPKDAAKINETTNTLSEVKETLKMVGFKTKQIDGA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 + + + D ++I A++ +S Sbjct: 168 LSKI----SSTDDVEKMIEEAIKLMST 190 >gi|284931638|gb|ADC31576.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma gallisepticum str. F] Length = 226 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 19/221 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57 MI + IE + +L Y + S + + +F+ + + Sbjct: 1 MITSVYAKIEYVTNTKMLFVANNWGYWVNVKPN--SGFSRTDNNVLVFLHELTFLAQNNA 58 Query: 58 I--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 I L+ F S +++WF L ++ G+G + AM V+ E++ I + + ++ Sbjct: 59 INKELYAFKSLKEKEWFKTLLTINGIGPKTAMNVM-VNKQEEVLTLIKNNDLNGLLRLEN 117 Query: 116 ISMKIASRIMTE-------LKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAI 164 I+ K+A+ ++ LK + + V Q + +K+ + I AI Sbjct: 118 INKKVATMLLASDIASKHYLKNQIVVSDKVEPQIDDDEKIDDSKDLNDDELLSEIVIEAI 177 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 L++LGY Q+Q TA+ + K ++I D + ++ + ++ I Sbjct: 178 DCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218 >gi|31544808|ref|NP_853386.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma gallisepticum str. R(low)] gi|81572800|sp|Q7NAN2|RUVA_MYCGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|31541654|gb|AAP56954.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma gallisepticum str. R(low)] gi|284930882|gb|ADC30821.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma gallisepticum str. R(high)] Length = 226 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 19/221 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57 MI + IE + +L Y + S + + +F+ + + Sbjct: 1 MITSVYAKIEYVTNTKMLFVANNWGYWVNVKPN--SGFSRTDNNVLVFLHELTFLAQNNA 58 Query: 58 I--RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 I L+ F S +++WF L ++ G+G + AM V+ E++ I + + ++ Sbjct: 59 INKELYAFKSLKEKEWFKALLTINGIGPKTAMNVM-VNKQEEVLTLIKNNDLNGLLRLEN 117 Query: 116 ISMKIASRIMTE-------LKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAI 164 I+ K+A+ ++ LK + + V Q + +K+ + I AI Sbjct: 118 INKKVATMLLASDIASKHYLKNQIVVSDKVEPQIDDDEKIDDSKDLNDDELLSEIVIEAI 177 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 L++LGY Q+Q TA+ + K ++I D + ++ + ++ I Sbjct: 178 DCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218 >gi|113474071|ref|YP_720132.1| DNA recombination protein RuvA [Trichodesmium erythraeum IMS101] gi|110165119|gb|ABG49659.1| DNA recombination protein, RuvA [Trichodesmium erythraeum IMS101] Length = 109 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + +Y+ V+++V V Y + R L + G +F MR+ Sbjct: 1 MINYLKGKVANVYKGSGFRMTVILEVNQVGYELQVLPRLTQSLQE-GKQVQVFTHQQMRE 59 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI 93 DQ+ L+GF + +R F L SV G+GA++A+ +L + Sbjct: 60 DQMVLYGFGTSAERDLFRQLVSVSGIGAQLAIALLDTL 97 >gi|240047398|ref|YP_002960786.1| Holliday junction DNA helicase RuvA [Mycoplasma conjunctivae HRC/581] gi|239984970|emb|CAT04963.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma conjunctivae] Length = 217 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 21/217 (9%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I KI G I ++Y++++ G Y+IY P + + + ++V + Sbjct: 3 IYKI-GKIVSKNKNYLILEQAGNGYLIYTPN--IERFNR-DEKRKIYVYEFENDYSKITY 58 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L S+QG+G + AM L+ I ++++ I + K +++I IS + A Sbjct: 59 GFDNFKERILFEDLISIQGIGPKTAMIALN-IGWQKIIDYIAAGDWKSLSKIQYISDRNA 117 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------------FAINAISALVN 169 +I+ E + K L + + + AI L Sbjct: 118 KQIIFEFQKKYTKLIESAKNQTTTQENNTKQADEVIDEHLMQKTLLEQKTAIELEDTLKI 177 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 LG+ + Q A+ +V E +I A++ IS Sbjct: 178 LGFQKRQINYALANVEPTE----SFEHLIEEAIKLIS 210 >gi|308190042|ref|YP_003922973.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER] gi|307624784|gb|ADN69089.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER] Length = 195 Score = 110 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P L +++ L Sbjct: 1 MVLYRKGKIVYKDGKNLIFESDNVGYYVMFPDNKRIKL---NQEIKMYLYEIKNDFTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ FM L ++ G+G RVA VL+ + + I N + IA+I I+ ++ Sbjct: 58 YGFKELEERKLFMDLINLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRL 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ EL+ K +++ ++ + A L LG+ Q +A Sbjct: 117 ARIIVEELQDKWAKITN---------TQDAQKQVKNSNLLSEAKEILKMLGFKAAQIDSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + D +I A++ + Sbjct: 168 LTKVELNQ----DVESMIEEAIKLM 188 >gi|257462985|ref|ZP_05627389.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D12] gi|317060603|ref|ZP_07925088.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12] gi|313686279|gb|EFS23114.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12] Length = 101 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + +Y +DV GV Y +Y +R + ++G +++ H+R+ + +L Sbjct: 1 MFEYLKGFVSYKKPEYFALDVHGVAYRVYISLRMYEKI-ELGQEYQIYIYNHIREGEYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102 GFL + +R+ F LL SV+G+G +A+ LS + +LV I Sbjct: 60 IGFLEEKERKLFELLLSVKGIGISLALAALSTYSVEQLVAYI 101 >gi|161621805|ref|YP_015967.2| Holliday junction DNA helicase motor protein [Mycoplasma mobile 163K] Length = 201 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 20/207 (9%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQIR 59 I KI G I ++Y L++ ++IY + L K +F+ H Sbjct: 3 IYKI-GKIVSFGKNYFLLESNYEGFLIYA-----AELEKFEKDVVTKVFIYKHENAYSKT 56 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F+ L S+ G+G + A+ L E++ I + + ++++P + +K Sbjct: 57 LYGFKTFKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLK 115 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I E + K +L + N S + L LG+ +Q Sbjct: 116 SAKQICFEFQSKYANL-------LEKENSGNLKFESKTKKITELSNTLKTLGFKTNQINY 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ K D +++ +++ I+ Sbjct: 169 AISNINDKN----DIEEMLEESIQLIA 191 >gi|47458434|gb|AAT27756.1| holliday junction DNA helicase RuvA [Mycoplasma mobile 163K] Length = 204 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 20/207 (9%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQIR 59 I KI G I ++Y L++ ++IY + L K +F+ H Sbjct: 6 IYKI-GKIVSFGKNYFLLESNYEGFLIYA-----AELEKFEKDVVTKVFIYKHENAYSKT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F+ L S+ G+G + A+ L E++ I + + ++++P + +K Sbjct: 60 LYGFKTFKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I E + K +L + N S + L LG+ +Q Sbjct: 119 SAKQICFEFQSKYANL-------LEKENSGNLKFESKTKKITELSNTLKTLGFKTNQINY 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ K D +++ +++ I+ Sbjct: 172 AISNINDKN----DIEEMLEESIQLIA 194 >gi|213421561|ref|ZP_03354627.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 105 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 3/105 (2%) Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159 ++ + + ++PGI K A R++ E+K + L + + + Sbjct: 2 NAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDA 61 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A++ALV LGY +A+ V + + + A +IR ALRA Sbjct: 62 EQEAVAALVALGYKPQEASRMVSKIARPD---ASSETLIRDALRA 103 >gi|69250107|ref|ZP_00605099.1| RuvA, C-terminal [Enterococcus faecium DO] gi|68194009|gb|EAN08566.1| RuvA, C-terminal [Enterococcus faecium DO] Length = 125 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 84 RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDM 143 +V + +++ + L++++ + + + PG+ K A +++ +LKGK LS + Sbjct: 8 KVPLAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFGELSIDTPFSL 67 Query: 144 SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + A+ AL LGY + + KE + + +R AL+ Sbjct: 68 FDEANTKDATA-----LSEAMEALSALGYSDREIKRVEKQL--KEVDNQTTDEYLRQALK 120 Query: 204 AI 205 + Sbjct: 121 LM 122 >gi|13358012|ref|NP_078286.1| holliday-junction binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762222|ref|YP_001752534.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920473|ref|ZP_02690444.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508627|ref|ZP_02689294.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701725|ref|ZP_02971417.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|20455274|sp|Q9PQ41|RUVA_UREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045777|sp|B1AJ90|RUVA_UREP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|11356864|pir||G82889 holliday-junction binding protein UU449 [imported] - Ureaplasma urealyticum gi|6899441|gb|AAF30861.1|AE002141_7 holliday-junction binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827799|gb|ACA33061.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902931|gb|EDT49220.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676086|gb|EDT87991.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700992|gb|EDU19274.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 195 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 27/205 (13%) Query: 8 NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQDQIR--LF 61 + + V+ + + Y I P L +I FC L++ ++ ++ I L+ Sbjct: 7 KVIYANANIVVGEHNFIGYQIRIPKD--YEL-EINKFCKLYLYEYISIMPNKNLIIKDLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F+ L S+ +G + A+ +L + ++++I +N + I GI+ + A Sbjct: 64 GFRTYNERLLFIDLISINSIGPKTAINIL-KYDIDTIIDAIATKNIDYLITIKGINQRNA 122 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 + I +L K I+ + ++A L NLGY + A+ Sbjct: 123 NLICDQLNYKYIN-----------------KVNDKNNWAKELSIGLENLGYTKKDIEYAI 165 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 V + D S+II A++ IS Sbjct: 166 TKVKINSQQDIDISEIISSAIKEIS 190 >gi|224540665|ref|ZP_03681204.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus DSM 14838] gi|224517737|gb|EEF86842.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus DSM 14838] Length = 115 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 +LS ++ ELV I +N+ ++ + GI +K A R++ +LK K + ++ + + Sbjct: 2 ILSALSPAELVNVISTENANLLKTVKGIGLKTAQRVIVDLKDKIKTGAASAGSTIGSLGG 61 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + AI+AL LG+ Q + V+++LK+E + A Q+I+LAL+ + Sbjct: 62 MLS--AANAQVQEEAIAALTMLGFAQAPSQKVVLAILKEEPD-APVEQVIKLALKRL 115 >gi|33322999|gb|AAQ07236.1|AF496544_1 holliday junction DNA helicase [Lactobacillus delbrueckii subsp. lactis] Length = 83 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++++ L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KNGDKARIYVEQVVRENRMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVA 86 +GF S D+ F L V G+G + A Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSA 83 >gi|294155532|ref|YP_003559916.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145] gi|291599949|gb|ADE19445.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145] Length = 201 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 80/196 (40%), Gaps = 15/196 (7%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++++ G Y+I L ++ + ++GF Sbjct: 7 GEIVYKKNKNLILESYGTGYMIQVACADRFELNTKLKMHLAYIYNEFAK-TFSIYGFKDY 65 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124 ++R F+ L +V G+GA++AM +L T +L + N + ++++ ++ K A I Sbjct: 66 MERILFLDLINVNGIGAKIAMNILDNGWETVADL---VASANYETLSKLNFVNEKNARNI 122 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + L+ K + +V + + N + + +L LG+ + Q + A+ + Sbjct: 123 ILSLQDKWKKIRNVSNSNETAKN---------INALSDVSESLKMLGFKEKQISYALSKI 173 Query: 185 LKKEKNIADDSQIIRL 200 E+ Q I+L Sbjct: 174 KISEQLEDMVEQSIKL 189 >gi|168700081|ref|ZP_02732358.1| probable holliday junction DNA helicase ruvA [Gemmata obscuriglobus UQM 2246] Length = 247 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 43/240 (17%) Query: 1 MIGKIKGNIEGL--YEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQ 57 MI K+ G + ED V + + Y I P + + G T + ++ + Sbjct: 1 MITKMTGVLTRCRHDEDDVRLQIGPFEYQIMVPEAVRRQIQMRTGHELTFHITEYLEGNS 60 Query: 58 ------IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 R GFL + + ++F L +V+ +G + A+ ++ + + ++I Q++K ++ Sbjct: 61 SGNRFVPRRVGFLHEHELEFFELFCTVEKIGVKKALKAMA-FSVKTIADAISRQDAKWLS 119 Query: 112 QIPGISMKIASRIMTELKGKAISLS---------------------------------SV 138 +PGI A +I+T LK K + Sbjct: 120 ALPGIGPTTAEQIVTTLKRKVTKFTVLNTPAPVAAPGAEPAPDAVVEEKPSGKKAKSAKK 179 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 + + E + + AL+ LG +A + ++L + + I Sbjct: 180 TAAEEPALATEPLVTAADGQLIEDVYQALMGLGLNPLEARAKLDALLTCGQPFRSLQEAI 239 >gi|171920937|ref|ZP_02696104.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178954|ref|ZP_02555140.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024044|ref|ZP_02569578.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518273|ref|ZP_02555997.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524367|ref|ZP_02558092.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867795|ref|ZP_03079795.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273854|ref|ZP_03206388.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554366|ref|YP_002284876.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550585|ref|ZP_03771534.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551217|ref|ZP_03772163.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|254767398|sp|B5ZBT6|RUVA_UREU1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171903169|gb|EDT49458.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209229|gb|EDU06272.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019075|gb|EDU57115.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998198|gb|EDU67295.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660085|gb|EDX53465.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660492|gb|EDX53749.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249609|gb|EDY74391.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541867|gb|ACI60096.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379032|gb|EEH01397.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379739|gb|EEH02101.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 195 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 27/205 (13%) Query: 8 NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH----MRQDQIR--LF 61 + + V+ + + Y I P L ++ FC L++ + ++ I L+ Sbjct: 7 KVIYANANVVIGEHNFIGYQIRVPKD--YEL-EVNKFCKLYLYEYASIMPNKNLIIKDLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F+ L S+ +G + A+ +L + ++++I ++ +A I G++ + A Sbjct: 64 GFRTYNERLLFIDLISINSIGPKTAINIL-KYDINLIIDAIATKDVDFLATIKGVNQRSA 122 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 + I +L K I+ + +A L NLGY + A+ Sbjct: 123 NLICDQLNYKYIN-----------------KVSEKNPWAKELSIGLENLGYDKKDIEYAI 165 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 V + D S+II A++ IS Sbjct: 166 TKVKVDTQQNIDISEIIGCAIKEIS 190 >gi|144900756|emb|CAM77620.1| Bacterial DNA recombination protein, RuvA [Magnetospirillum gryphiswaldense MSR-1] Length = 75 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG I+ L +D+ ++DV GV Y+++C RTL L ++G L VETH+R+D I L Sbjct: 1 MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59 Query: 61 FGFLSDLDRQWFMLL 75 +GFL +R WF LL Sbjct: 60 YGFLEPGERDWFNLL 74 >gi|193216717|ref|YP_001999959.1| Holliday junction DNA helicase RuvA [Mycoplasma arthritidis 158L3-1] gi|254767376|sp|B3PMK3|RUVA_MYCA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193002040|gb|ACF07255.1| Holliday junction DNA helicase motor protein [Mycoplasma arthritidis 158L3-1] Length = 203 Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 8/200 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G I + +Y+++D G +IY P + K + +F+ + Sbjct: 1 MIIYKYGKIMHVNTNYLILDHNGEGDLIYAPNISRF---KKDELRKIFISQIENEYTKVT 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F L +QG+G + A+ +L+ I ++ + N + +IP +S KI Sbjct: 58 YGFDNFKELVIFEDLIEIQGLGPKTAISILN-IGWENVINYVATANKGALGKIPYVSSKI 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+ I+ + K + D + K A + F + + LG+ Q Q A Sbjct: 117 ANAIIFSYQDKYAKFMKKLTSDEAAKIKVPASSENENKF----LDTMKMLGFKQQQIKFA 172 Query: 181 VVSVLKKEKNIADDSQIIRL 200 + + + I+L Sbjct: 173 LDKIELNDDIETCVENAIKL 192 >gi|1361545|pir||F64239 Holliday junction DNA helicase ruvA homolog - Mycoplasma genitalium Length = 260 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 18/209 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRT-LSCLGKIGDFCTLFVETHMRQDQI- 58 MI I G + + + ++++ + Y + + + +QI Sbjct: 56 MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 115 Query: 59 -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 F F + +++WF L + G+G++ A+ +L+ E+ + I+ N + I G++ Sbjct: 116 EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVN 174 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 KIA R + L + N + + L +LGY Q + Sbjct: 175 NKIA-RALLSL-----------EIFEKSENNKNIKGVQVADGYDELFETLKSLGYKQQEI 222 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + K D SQ++ ++ +S Sbjct: 223 QDALKMI--EVKPDFDISQLVAEVIKLMS 249 >gi|153827627|ref|ZP_01980294.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MZO-2] gi|149737899|gb|EDM52804.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MZO-2] Length = 66 Score = 97.8 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FG 62 +G Sbjct: 61 YG 62 >gi|108885107|ref|NP_073029.2| Holliday junction DNA helicase RuvA [Mycoplasma genitalium G37] gi|2498869|sp|Q49424|RUVA_MYCGE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84626136|gb|AAC71583.2| Holliday junction DNA helicase [Mycoplasma genitalium G37] gi|166078725|gb|ABY79343.1| Holliday junction DNA helicase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 205 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 18/209 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRT-LSCLGKIGDFCTLFVETHMRQDQI- 58 MI I G + + + ++++ + Y + + + +QI Sbjct: 1 MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 60 Query: 59 -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 F F + +++WF L + G+G++ A+ +L+ E+ + I+ N + I G++ Sbjct: 61 EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVN 119 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 KIA R + L + N + + L +LGY Q + Sbjct: 120 NKIA-RALLSL-----------EIFEKSENNKNIKGVQVADGYDELFETLKSLGYKQQEI 167 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + K D SQ++ ++ +S Sbjct: 168 QDALKMI--EVKPDFDISQLVAEVIKLMS 194 >gi|71894187|ref|YP_278295.1| Holliday junction DNA helicase motor protein [Mycoplasma synoviae 53] gi|123747949|sp|Q4A6N7|RUVA_MYCS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71850975|gb|AAZ43584.1| holliday junction DNA helicase RuvA [Mycoplasma synoviae 53] Length = 198 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 70/192 (36%), Gaps = 14/192 (7%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I + ++++ +G ++ + G+ L++ + +GF + Sbjct: 7 GEIVYKNNNNIILESKGEGNLVTICDNSRYS---KGEKLKLYLYEVKNDYIQQTYGFKTF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+ +G + AM +L + + I + K I++I IS K A I Sbjct: 64 KERLLFTDLISIDKIGPKTAMLILDQ-NWELVANLIAEGDWKEISKINYISDKSAKLICV 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 ELK K + + ++ + L LG+ AV ++ Sbjct: 123 ELKDKWAKI----------IQNKEVKKFDDITNIKELKQTLNKLGFKASDIDYAVNNISS 172 Query: 187 KEKNIADDSQII 198 ++ + I Sbjct: 173 TKELDLMVEESI 184 >gi|297183320|gb|ADI19457.1| holliday junction resolvasome, DNA-binding subunit [uncultured bacterium HF0500_16O16] Length = 69 Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +IDV GV Y + + T L +G L T++R+D++ L Sbjct: 1 MIDFLRGTLHERTPTRAVIDVGGVGYGVAISLTTYDRLPSVGTEIFLHTYTYVREDRLDL 60 Query: 61 FGFLSDL 67 +G Sbjct: 61 YGIADAE 67 >gi|293363750|ref|ZP_06610492.1| putative Holliday junction DNA helicase RuvA [Mycoplasma alligatoris A21JP2] gi|292552671|gb|EFF41439.1| putative Holliday junction DNA helicase RuvA [Mycoplasma alligatoris A21JP2] Length = 201 Score = 92.0 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 76/202 (37%), Gaps = 20/202 (9%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ--DQIR 59 I KI G I ++++ G + I + ++ L++ Sbjct: 3 IYKI-GEIVYKKNKNIILESYGSGFWIQVANQERF---EVNSKVKLYLADIFSDFTKSFS 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGIS 117 +GF ++R F L +V G+GA++AM +L T +L I+ + + + ++ ++ Sbjct: 59 TYGFKDYMERVLFFDLINVNGIGAKIAMNILENGWQTVADL---IVEGSVETLTKLNAVN 115 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 KIA ++ + K + + + N + L LG+ + Q Sbjct: 116 EKIAKNLILTYQDKWLKIRGAANSKETSKNTINLNELGNS---------LKVLGFKEKQI 166 Query: 178 TTAVVSVLKKEKNIADDSQIIR 199 + A+ + + Q I+ Sbjct: 167 SYALSKIKVTDHLEDMVEQSIK 188 >gi|328471586|gb|EGF42464.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus MTCC 5462] Length = 114 Score = 91.6 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 7/120 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L SV G+G + A+ +L+ +++ L +I + K + + PGI K A++I+ +LKGK Sbjct: 2 QLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQIILDLKGKIT 61 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 + + + + A + A+ A+ GY Q A + LK Sbjct: 62 TDAQPAAATIMPTADQVAPELADALAALVAL------GYTQR-AVDGITDALKAFDATTT 114 >gi|113474072|ref|YP_720133.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum IMS101] gi|110165120|gb|ABG49660.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum IMS101] Length = 119 Score = 91.2 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 +LS +LV++I+ N++V+A+ PG+ K A RI ELK K S Sbjct: 1 MLSLTELPDLVQAIVGGNTRVLAKTPGVGAKTAERITLELKNKLAEWRQDAGLTTSV--- 57 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206 + MP+ L+ LGY + ++ +V K + IR A+ +S Sbjct: 58 ---PVGVMPAIQEEVEMTLLALGYTGQEVIQSLQAVSKDANMSKNTNAEDWIREAISWLS 114 >gi|308189841|ref|YP_003922772.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER] gi|307624583|gb|ADN68888.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER] Length = 145 Score = 90.9 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 4/141 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P L +++ L Sbjct: 1 MVLYRKGKIVYKDGKNLIFESNNVGYYVMFPDNKRIKL---NQELKMYLYEIKNDFTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L ++ G+G RVA VL+ + + I N + IA+I I+ ++ Sbjct: 58 YGFKELEERKLFADLVNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRL 116 Query: 121 ASRIMTELKGKAISLSSVVQQ 141 A I+ ELK K S S V++ Sbjct: 117 ARIIVEELKEKLSSKSKDVKK 137 >gi|13508274|ref|NP_110224.1| Holliday junction DNA helicase motor protein [Mycoplasma pneumoniae M129] gi|2498870|sp|P75243|RUVA_MYCPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|1673979|gb|AAB95955.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae M129] gi|301633407|gb|ADK86961.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae FH] Length = 206 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR-QDQIR 59 MI I G I + + ++++ + Y S + +F + R Sbjct: 1 MIASIFGKITFVGKRKIIVEANCISYWFNVKENH-SFEKNLEKPRQVFCQIIKRMVTNQI 59 Query: 60 L---FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L F F + +++WF + G+G++ A+ +L+ E+ + I N + ++ G Sbjct: 60 LEEGFAFNTLEEKEWFSKFIELNGIGSKTALNLLNNN-LEEMRDYIKNSNYHALTKLTGS 118 Query: 117 SMKIASRIM-TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K+A ++ EL + K +M + L +LGY Sbjct: 119 NSKVARALLALELYDR------------DDGGKRIKPNTAMANDYDEMFDTLKSLGYKPQ 166 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + K D S++I ++ +S Sbjct: 167 DIQNALSKI--EIKPNFDVSEVIAEVIKLMS 195 >gi|269114958|ref|YP_003302721.1| holliday junction DNA helicase ruvA [Mycoplasma hominis] gi|268322583|emb|CAX37318.1| Holliday junction DNA helicase ruvA [Mycoplasma hominis ATCC 23114] Length = 206 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 82/196 (41%), Gaps = 7/196 (3%) Query: 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGF 63 + G I + +Y+++D G +IY + K D +F+ + + + +GF Sbjct: 4 YLYGKIMHVNTNYLILDHNGEGELIYVAD--IKRFNK-DDLRKIFIYDVVNEYKKTTYGF 60 Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 + + F L S+QG+G + A+ +L+ + L++ I ++ + + +S++IA+ Sbjct: 61 ENFKELIIFEDLISLQGLGPKTAISLLN-LGWENLIQLIANEDKDKLCEASYVSLRIANN 119 Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183 I+ K K S + + K + S+ + LG+ + Q + A+ Sbjct: 120 IIFAYKQKYAKFLSKLSDEDLLKIKSKNTSDSLREKFEYTM---RMLGFKKQQISYALEK 176 Query: 184 VLKKEKNIADDSQIIR 199 + E I+ Sbjct: 177 MSITENIEESVENAIK 192 >gi|213022656|ref|ZP_03337103.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 87 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ E+K + + + + A++ALV LGY + Sbjct: 1 GKKTAERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQE 60 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A+ V + + + A +IR ALRA Sbjct: 61 ASRMVSKIARPD---ASSETLIRDALRA 85 >gi|256384343|gb|ACU78913.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. capri str. GM12] gi|256385175|gb|ACU79744.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455994|gb|ADH22229.1| holliday junction DNA helicase RuvA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 186 Score = 89.3 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + Y+ I+ Y L L K+ +++ ++ + + Sbjct: 1 MNDYINGLLHKIDDKYLYIESNNSGYRFLYLKSDLKDL-KLNQNNQVYIAINVIDNVFKY 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L R F LL ++ +G + A +L EL++ + I Q+ GI Sbjct: 60 YGFKNQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGSYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +++ + I++L LGY Sbjct: 120 A-RLII------------------NSVQKELFNNKISDKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++++ + + L +S Sbjct: 161 IINI----DENMSIEDLTKYVLEQLS 182 >gi|331703541|ref|YP_004400228.1| Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802096|emb|CBW54250.1| Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 186 Score = 88.9 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + Y+ I+ Y L L K+ ++V ++ + + Sbjct: 1 MNDYINGLLHKIDDKYLYIESNNSGYRFLYLKSDLKDL-KLDQNNQVYVAINVIDNVFKY 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF L R F LL ++ +G + A +L EL++ + I Q+ GI Sbjct: 60 YGFKDQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGSYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +++ + I++L LGY Sbjct: 120 A-RLII------------------NSVQKELFNNKISDKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++++ + + + L +S Sbjct: 161 IINI----DEDMNIEDLTKYVLEQLS 182 >gi|42561075|ref|NP_975526.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400587|sp|Q6MT68|RUVA_MYCMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|42492572|emb|CAE77168.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320398|gb|ADK69041.1| putative Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 186 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + Y+ I++ Y L L K+ ++V ++ + + Sbjct: 1 MNDYINGLLHKIDDKYLYIELNNSGYRFLYLKTDLKDL-KLNQNNQVYVAINVIDNVFKY 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L R F LL ++ +G + A +L EL++ + I Q+ GI Sbjct: 60 YGFKNQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGNYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +++ + I++L LGY Sbjct: 120 A-RLII------------------NSVQKELFNNKISDKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++++ + + + L +S Sbjct: 161 IINI----DEDMNIEDLTKYVLEQLS 182 >gi|255030240|ref|ZP_05302191.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes LO28] Length = 85 Score = 88.6 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 F L SV G+G + A+ +++ L+ +I ++ + + P + K A +I+ +LKGK Sbjct: 1 FKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGK 60 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMP 157 L+ VV ++ V E + + Sbjct: 61 ---LADVVASEIVYVAPENDMVAGLS 83 >gi|291084730|ref|ZP_06541669.2| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 102 Score = 88.2 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 IG+++G I VL++ GV Y ++ P+ L + G +F +R+D Sbjct: 46 IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQ 102 >gi|254775923|ref|ZP_05217439.1| Holliday junction DNA helicase RuvA [Mycobacterium avium subsp. avium ATCC 25291] Length = 68 Score = 88.2 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDR 69 +GF R Sbjct: 60 YGFTDAETR 68 >gi|207110462|ref|ZP_03244624.1| Holliday junction DNA helicase motor protein [Helicobacter pylori HPKX_438_CA4C1] Length = 102 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 23/124 (18%) Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141 G R+A+ +LS + E I + K + Q+PGI K+A +IM +L G I Sbjct: 1 GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQ------- 53 Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 AL +LG+ + + VLK K I+ A Sbjct: 54 ------------DENKPARNEVFLALESLGFKSAE----INKVLKTLKPHLSIEAAIKEA 97 Query: 202 LRAI 205 L+ + Sbjct: 98 LQQL 101 >gi|53987370|gb|AAV27571.1| branch migration of holliday structures; repair [Mycoplasma hyopneumoniae 232] Length = 154 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 21/152 (13%) Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ E + Sbjct: 1 MFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQK 59 Query: 131 KAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNLGYGQ 174 K + + N E A I S + +A L LG+ Sbjct: 60 KYERFNENHKNQTEETNPETQEKELEKEDDLADITIQKSNLEDKTAANLEDTLKMLGFKP 119 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 Q A+ V E + +I A++ IS Sbjct: 120 RQIDYALTKVEPNE----NFENLIENAIKIIS 147 >gi|319776965|ref|YP_004136616.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|319777203|ref|YP_004136854.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|318038040|gb|ADV34239.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] gi|318038278|gb|ADV34477.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] Length = 145 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 4/141 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P K+ + + L Sbjct: 1 MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDN---KSIKLNQELKMCLYEIKNDFTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L ++ G+G RVA VL+ + + I N + IA+I I+ +I Sbjct: 58 YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 116 Query: 121 ASRIMTELKGKAISLSSVVQQ 141 A I+ ELK K S S V++ Sbjct: 117 ARIIVEELKEKLSSKSKDVKK 137 >gi|330936718|gb|EGH40905.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi str. 1704B] Length = 83 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 4/85 (4%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 2 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 60 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 61 VSAIKEKDLSSAD---LIRRALKGM 82 >gi|319776838|ref|YP_004136489.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|318037913|gb|ADV34112.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] Length = 145 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 4/141 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P L + + L Sbjct: 1 MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDNKRIKL---NQELKMCLYEIKNDFTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L ++ G+G RVA VL+ + + I N + IA+I I+ +I Sbjct: 58 YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 116 Query: 121 ASRIMTELKGKAISLSSVVQQ 141 A I+ ELK K S S V++ Sbjct: 117 ARIIVEELKEKLSSKSKDVKK 137 >gi|83319351|ref|YP_424403.1| Holliday junction DNA helicase ruvA, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123767572|sp|Q2SS60|RUVA_MYCCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83283237|gb|ABC01169.1| Holliday junction DNA helicase ruvA, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 186 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 80/206 (38%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + ++ +++ + Y Y +++ K+ + +++ ++ + + Sbjct: 1 MNDYINGFLYKIDDKFLYLELNYLGYR-YLYLKSDLKNFKLNENNKVYIAINVIDNHFKY 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L R F +L ++ +G + A +L + EL++ + I Q+ GI Sbjct: 60 YGFFNQLVRDLFEILININTIGEKTAFLILENYSYQELIDIFKNGKTDKILQLKGIGNYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +++ + I++L LGY Sbjct: 120 A-RLII------------------NSVQKELFNNKISEKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +++V ++ + L +S Sbjct: 161 IINV----DEDLTIDELTKYVLEKLS 182 >gi|238809746|dbj|BAH69536.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 154 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 4/141 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P L + + L Sbjct: 10 MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDNKRIKL---NQELKMCLYEIKNDFTWSL 66 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L ++ G+G RVA VL+ + + I N + IA+I I+ +I Sbjct: 67 YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 125 Query: 121 ASRIMTELKGKAISLSSVVQQ 141 A I+ ELK K S S V++ Sbjct: 126 ARIIVEELKEKLSSKSKDVKK 146 >gi|169836512|ref|ZP_02869700.1| Holliday junction DNA helicase RuvA [candidate division TM7 single-cell isolate TM7a] Length = 76 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 41/70 (58%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105 + T++++D I L+GF + +R+ F L S+ GVG ++A+ +LS E++E + Sbjct: 5 KIIYFTNVKEDDISLYGFKTQNERELFKALISISGVGPKLAIAILSTFNMREIIEIVTED 64 Query: 106 NSKVIAQIPG 115 SK++ + G Sbjct: 65 ESKILQEFQG 74 >gi|206895983|ref|YP_002247234.1| holliday junction ATP-dependent DNA helicase RuvA, putative [Coprothermobacter proteolyticus DSM 5265] gi|206738600|gb|ACI17678.1| holliday junction ATP-dependent DNA helicase RuvA, putative [Coprothermobacter proteolyticus DSM 5265] Length = 182 Score = 82.0 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 23/161 (14%) Query: 48 FVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS 107 ++ + IR+F F + + F +L++V+GVG A +LS +L+ I + Sbjct: 40 YLFFVSFDNDIRVFVFSNKEEFGLFQVLKNVKGVGNIKASRILSLYDVQQLLNMIKAGDE 99 Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167 +A +PGI + A RI+ EL G+ D + ++A Sbjct: 100 HELALLPGIGERTAKRIVAELSGRLTHTRHDFDNDF-----------------MEVVNAA 142 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206 +LGY ++ V +L D +R +R ++ Sbjct: 143 CDLGYERN----VVTELLNGSSEWRDKTLEDALRWVIRELN 179 >gi|313665319|ref|YP_004047190.1| Holliday junction DNA helicase RuvA [Mycoplasma leachii PG50] gi|312949212|gb|ADR23808.1| putative Holliday junction DNA helicase RuvA [Mycoplasma leachii PG50] Length = 186 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 78/206 (37%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I + + + ++ +++ + Y R L K+ + +++ T++ + + Sbjct: 1 MNDYINAFLHKIDDKFLYLELNNLGYRYLYLKRDLKNF-KLSENNKIYIATNVIDNLFKC 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L R F +L ++ +G + A +L + EL++ + I Q+ GI Sbjct: 60 YGFYNQLVRDLFEILININTIGEKTAFLILENYSYEELIDIFKNAKTDKILQLKGIGSYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +++ + I++L LGY Sbjct: 120 A-RLII------------------NSVQKELFNNKISEKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++++ ++ + L +S Sbjct: 161 IINI----DEDLTIDELTKYVLEKLS 182 >gi|218508888|ref|ZP_03506766.1| Holliday junction DNA helicase RuvA [Rhizobium etli Brasil 5] Length = 55 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+ Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVRE 55 >gi|325973630|ref|YP_004250694.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis str. Illinois] gi|325990082|ref|YP_004249781.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis KI3806] gi|323575167|emb|CBZ40829.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis] gi|323652232|gb|ADX98314.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis str. Illinois] Length = 206 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 17/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI-- 58 M +K I ++++Y++ + G Y I T S K + ++V + D Sbjct: 1 MY-YLKCQIISVHKNYLIAESNGKGYKINFAD-TYSI--KEQEEHLIYVFREFKLDTKNQ 56 Query: 59 ---RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 +LFGFLS+ + + F L +++G+G + A +L+ + + +A++ G Sbjct: 57 ITSQLFGFLSEKEFELFNSLLAIKGIGCKTAQAILTN-DWNMMYFLAEREERLKLAELRG 115 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 ++KIA+ + +K SL + + S + IS+L+ +GY D Sbjct: 116 FNLKIANLFIYSIKN-MKSLKNSFNKHSSSSYSDSKECK-----EKEVISSLIKIGYKFD 169 Query: 176 QATTAVVSVLKKEKNIADD-SQIIRLALRAIS 206 A+ + + + + +D + +I L+ IS Sbjct: 170 DIKRALDIIRESDTELKNDFNSLINECLKTIS 201 >gi|331668555|ref|ZP_08369403.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli TA271] gi|331063749|gb|EGI35660.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli TA271] Length = 80 Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183 ++ E+K + L + + + + A++ALV LGY +A+ V Sbjct: 1 MIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSK 60 Query: 184 VLKKEKNIADDSQIIRLALRA 204 + + + A +IR ALRA Sbjct: 61 IARPD---ASSETLIREALRA 78 >gi|50365239|ref|YP_053664.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1] gi|50363795|gb|AAT75780.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1] Length = 182 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 24/185 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVC-YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M + +I ++Y+ ++ Q Y Y K LF+ H + + Sbjct: 1 MKDYLVCDINSKDDNYLYVEYQNKGEYFSYLTKDNF----KNEKNIKLFIVDHNTEFENV 56 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 F S +R F L ++ VG + + +L+ + E ++ I + + +A++ GI Sbjct: 57 EIVFRSRDERNLFKELVKIKTVGLKTSFYLLNNFSFEEFIKMIEEYDIEKLAKLKGIGNY 116 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I+ EL+ + I++LV LG+ Sbjct: 117 TAKLIIEELQKHFFK-------------------NKITQKKEKIITSLVKLGFSYKTIMK 157 Query: 180 AVVSV 184 + +V Sbjct: 158 NIANV 162 >gi|312969901|ref|ZP_07784084.1| holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli 1827-70] gi|310338186|gb|EFQ03275.1| holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli 1827-70] Length = 76 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 +K + L + + + + A++ALV LGY +A+ V + + Sbjct: 1 MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARP 60 Query: 188 EKNIADDSQIIRLALRA 204 + A +IR ALRA Sbjct: 61 D---ASSETLIREALRA 74 >gi|323165016|gb|EFZ50806.1| ruvA, C-terminal domain protein [Shigella sonnei 53G] Length = 76 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 +K + L + + + + A++ALV LGY +A+ V + + Sbjct: 1 MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIART 60 Query: 188 EKNIADDSQIIRLALRA 204 + A +IR ALRA Sbjct: 61 D---ASSETLIREALRA 74 >gi|332756761|gb|EGJ87108.1| ruvA, C-terminal domain protein [Shigella flexneri 4343-70] Length = 76 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 +K + L + + + + A++ALV LGY +A+ V + + Sbjct: 1 MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARP 60 Query: 188 EKNIADDSQIIRLALRA 204 + +IR ALRA Sbjct: 61 D---TSSETLIREALRA 74 >gi|289812335|ref|ZP_06542964.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 47 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 24/45 (53%) Query: 93 ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 1 MSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHG 45 >gi|145628662|ref|ZP_01784462.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] gi|144979132|gb|EDJ88818.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] Length = 81 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Query: 124 IMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 ++ ELKGK + S + + + + S + AISAL+ LGY +A V Sbjct: 1 MLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEKMVK 60 Query: 183 SVLKKEKNIADDSQIIRLALRA 204 V K E Q+IR AL+A Sbjct: 61 RVAKPE---LTSEQVIREALKA 79 >gi|308187173|ref|YP_003931304.1| hypothetical protein Pvag_1667 [Pantoea vagans C9-1] gi|308057683|gb|ADO09855.1| hypothetical protein Pvag_1667 [Pantoea vagans C9-1] Length = 36 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 20/35 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL 35 MIG+++GNI VL++ GV Y IY P+ Sbjct: 1 MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCF 35 >gi|330896129|gb|EGH28350.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 43 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 3/45 (6%) Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A+SAL++LGY +A+ AV ++ +K+ + AD +IR AL+ + Sbjct: 1 SDAVSALISLGYKPQEASKAVSAIKEKDLSSAD---LIRRALKGM 42 >gi|207110212|ref|ZP_03244374.1| Holliday junction DNA helicase motor protein [Helicobacter pylori HPKX_438_CA4C1] Length = 77 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +R+D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLEAGQKVRLKILQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSV 78 +GFL + ++ F L + Sbjct: 60 YGFLEESEKILFERLLKI 77 >gi|197303404|ref|ZP_03168443.1| hypothetical protein RUMLAC_02126 [Ruminococcus lactaris ATCC 29176] gi|197297402|gb|EDY31963.1| hypothetical protein RUMLAC_02126 [Ruminococcus lactaris ATCC 29176] Length = 513 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y Y P+ + L +IG L E + Q L +GF + ++ F L Sbjct: 337 VFYSAYIPLNEEAVLPQIGTPPPLLREHRLYQADWLLRFYGFQAGELLSPEKPDFNEL-- 394 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 V + A+ L + + + V+ ++PGI K A RI+ Sbjct: 395 ---VDPKCDWALRHLDQFPVE-----VGTADYAVLLRVPGIGPKSAGRIV 436 >gi|153855718|ref|ZP_01996732.1| hypothetical protein DORLON_02750 [Dorea longicatena DSM 13814] gi|149751941|gb|EDM61872.1| hypothetical protein DORLON_02750 [Dorea longicatena DSM 13814] Length = 508 Score = 55.0 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 18/109 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGF----LSDLDRQWFMLLQS 77 V Y Y P+ L +G L E + Q L +GF L ++ F L Sbjct: 332 VFYSAYIPLNEDDALPGLGTPTPLLREHRLYQADWLLRFYGFQAGELLSEEKPDFNELID 391 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + A+ L + I + + ++PGI K ASRI Sbjct: 392 -----PKCDWALRHLEQFPVE-----IETASYARLLRVPGIGPKSASRI 430 >gi|2160258|dbj|BAA01034.1| RuvA [Escherichia coli] Length = 29 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIY 29 MIG+++G I VLI+V GV Y ++ Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVH 29 >gi|2078399|gb|AAB54026.1| unknown [Mycobacterium tuberculosis] Length = 94 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPI 32 MI ++G + + D+V+I+ GV Y + Sbjct: 6 MIASVRGEVLEVALDHVVIEAAGVGYRVNATP 37 >gi|331002621|ref|ZP_08326137.1| hypothetical protein HMPREF0491_00999 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408349|gb|EGG87825.1| hypothetical protein HMPREF0491_00999 [Lachnospiraceae oral taxon 107 str. F0167] Length = 476 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 20/111 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLF--VETHMRQDQIRLFGF-----LSDLDRQWFMLLQ 76 V Y Y P+ S L G L + IR +GF LS + F Sbjct: 301 VFYSAYIPVNEDSSLPNPGTAVPLLREHRLYQADWLIRFYGFNARELLSKEEPD-FNTYI 359 Query: 77 SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + + ++PGI K A RI+ Sbjct: 360 D-----PKCNWAVKHLEYFPVE-----VQTADISRLLRVPGIGPKAAKRIV 400 >gi|218961104|ref|YP_001740879.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas acidaminovorans] gi|167729761|emb|CAO80673.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas acidaminovorans] Length = 601 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 15/105 (14%) Query: 27 IIYCPIRTLSC-LGKIGDFCTLFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQ 79 ++ P S L + L + ++R + R F R L+S+ Sbjct: 498 EVFVPGNEQSIILPRSSSALRLLI--NIRDEAHR---FALSLHRKRRSRRTLESELESIS 552 Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 G+G + +L + + VE+I N + +++I GI KIA +I Sbjct: 553 GIGEKNKFLLLKELGS---VENIANANRETLSKIKGIGPKIAEKI 594 >gi|21227489|ref|NP_633411.1| Hef nuclease [Methanosarcina mazei Go1] gi|20905864|gb|AAM31083.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei Go1] Length = 864 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTE 127 L+ S+ +G + A +LS + VE+++ + + + ++ I K A+RI + E Sbjct: 807 LISSISNIGPKAARNLLSYFGS---VEAVMRADIEELKKVKQIGPKTAARIREVLE 859 >gi|149918455|ref|ZP_01906945.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1] gi|149820755|gb|EDM80165.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1] Length = 715 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 15/111 (13%) Query: 27 IIYCP-IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQ 79 ++ P R L L++ T +R + R F R L ++ Sbjct: 612 RVFVPGARDAIALAHGSSE--LYLMTRLRDEAHR---FAITHHRKRRGKRALTSTLDGIK 666 Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 GVG +L V++I + +A++ G+ K+A +I L G Sbjct: 667 GVGPATKKALLRHFGT---VKAIRAADVDALAEVKGVGPKLAEQIHASLSG 714 >gi|226325056|ref|ZP_03800574.1| hypothetical protein COPCOM_02848 [Coprococcus comes ATCC 27758] gi|225206404|gb|EEG88758.1| hypothetical protein COPCOM_02848 [Coprococcus comes ATCC 27758] Length = 506 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y Y P+ L +IG L E + Q L +GF +D ++ F L Sbjct: 330 VFYSAYIPLNEDPVLPEIGTPPPLLREHRLYQADWLLRFYGFQADELLTIEKPNFNELLD 389 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + + ++PG+ K ASRI+ Sbjct: 390 -----PKCDWALRHLELFPVE-----VETASYAELLRVPGVGPKSASRIV 429 >gi|255030452|ref|ZP_05302403.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes LO28] Length = 36 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC 37 M IKG + + +Y++++ + Y I S Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSF 36 >gi|205374297|ref|ZP_03227096.1| hypothetical protein Bcoam_14304 [Bacillus coahuilensis m4-4] Length = 55 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF 44 IKG +E + +YV+++ + Y +Y P S Sbjct: 14 YEYIKGTVEFIGPEYVVVEAGDIGYQLYTP-NPFSFSPHEKSH 55 >gi|291533988|emb|CBL07101.1| RuvA, C-terminal domain [Megamonas hypermegale ART12/1] Length = 51 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A AL++LGY + + + SVLKK N+ + II+ AL+ +S Sbjct: 5 DMYEEATQALLSLGYTKPE----INSVLKKAGNMTNTEDIIKFALKELS 49 >gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8] gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8] Length = 575 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 16/98 (16%) Query: 73 MLLQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 + + V GVG + A + + + +L ++ + + ++ G K A RI Sbjct: 93 LEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD---LTRLKGFGPKRAERI----- 144 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167 + + + + S+ + AI AL Sbjct: 145 -----REGLALAQAAGKRRPLGAVLSLARSLLEAIRAL 177 >gi|238921830|ref|YP_002935344.1| hypothetical protein EUBELI_20063 [Eubacterium eligens ATCC 27750] gi|238873502|gb|ACR73210.1| Hypothetical protein EUBELI_20063 [Eubacterium eligens ATCC 27750] Length = 485 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 22/112 (19%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLDRQWFMLLQSVQG- 80 V Y Y P+ S L ++ L E + Q L +GF +D L S Sbjct: 314 VFYSAYIPLNEDSALPELDAEIPLLREHRLYQADWLLRYYGFQADE-------LLSENRP 366 Query: 81 -----VGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + + A+ L + I + ++ +IPG+ K A RI+ Sbjct: 367 NFNEYLDPKCDWAVRHLGQFPVE-----IQTASYDMLLRIPGVGPKSAKRIV 413 >gi|24987362|pdb|1IXS|A Chain A, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 62 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A A A+ AL LG+ + QA V+ +L + A +I+ AL+ + Sbjct: 8 AGEKVESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPK-ARAQDLIKEALKRL 61 >gi|289808763|ref|ZP_06539392.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 36 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIR 199 A++ALV LGY +A+ V + + + A +IR Sbjct: 1 QEAVAALVALGYKPQEASRMVSKIARPD---ASSETLIR 36 >gi|254458423|ref|ZP_05071848.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1] gi|207084731|gb|EDZ62018.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1] Length = 475 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + F L SV GVGA+ ++ + V ++ QN+ ++ ++ GI+ K+AS+I Sbjct: 409 TKEELSDF--LTSVDGVGAKKVEKIVKHFGNVDEVVGVLHQNTSILTEVKGITKKLASKI 466 >gi|291550966|emb|CBL27228.1| hypothetical protein RTO_27780 [Ruminococcus torques L2-14] Length = 509 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y Y P+ + L +IG L E + Q L +GF + ++ F + Sbjct: 333 VFYSAYIPLNEDNVLPEIGTPPPLLREHRLYQADWLLRFYGFQAGELLSSEQPNFNEMLD 392 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + A+ L + + + + ++PGI K ASRI Sbjct: 393 -----PKCDWALRHLEQFPVE-----VEKASYATLLRVPGIGPKSASRI 431 >gi|291533536|emb|CBL06649.1| Putative ATPase (DUF699) [Megamonas hypermegale ART12/1] Length = 438 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++ G+G +A +++ L II ++ + ++PGI K A +I Sbjct: 84 FLASGAINGIGPAMAKKIVAEFGEKTLE--IIAKSPNKLLKVPGIGKKTAEKI 134 >gi|153811925|ref|ZP_01964593.1| hypothetical protein RUMOBE_02318 [Ruminococcus obeum ATCC 29174] gi|149832059|gb|EDM87144.1| hypothetical protein RUMOBE_02318 [Ruminococcus obeum ATCC 29174] Length = 513 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 18/109 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y Y P+ S L +IG L E + Q L +GF +D + F L Sbjct: 337 VFYSAYIPLNDDSILPQIGTPPPLLREHRLYQADWLLRFYGFQADELLSESQPNFNELLD 396 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + A+ L + + + ++PGI K ASRI Sbjct: 397 -----PKCDWALHHLEHFPVE-----VEKASYATLLRVPGIGPKSASRI 435 >gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A] gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A] Length = 821 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTE 127 L+ S+ +G + A +L + V++++ +++ + ++ I K A+RI + E Sbjct: 764 LISSISNIGPKAARNLLLHFGS---VKAVLQADTEELKKVKLIGPKTAARIKEVLE 816 >gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27] gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27] Length = 575 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 16/98 (16%) Query: 73 MLLQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 + + V GVG + A + + + +L ++ + + ++ G K A RI Sbjct: 93 LEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD---LTRLKGFGPKRAERI----- 144 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167 + + + + S+ + AI L Sbjct: 145 -----REGLALAQAAGKRRPLGAVLSLARSLLEAIRGL 177 >gi|238926841|ref|ZP_04658601.1| exodeoxyribonuclease V alpha subunit [Selenomonas flueggei ATCC 43531] gi|238885373|gb|EEQ49011.1| exodeoxyribonuclease V alpha subunit [Selenomonas flueggei ATCC 43531] Length = 723 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 73 MLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT---- 126 L S ++G+G A ++ R L +I + + ++ GI K A +I Sbjct: 95 RFLSSGVIEGIGPATARRIVERFGTDTLK--VIESTPRRLTEVTGIGPKTAEKITASYHR 152 Query: 127 --ELKG 130 EL+ Sbjct: 153 QNELRD 158 >gi|220929146|ref|YP_002506055.1| radical SAM protein [Clostridium cellulolyticum H10] gi|219999474|gb|ACL76075.1| Radical SAM domain protein [Clostridium cellulolyticum H10] Length = 461 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 19/111 (17%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQ--- 79 V Y + P T L + L + +R +GF + LL Sbjct: 249 VYYSAFIPTVTDPRLPALIKPPLLREHRLYQADWLLRFYGF-DADE-----LLSKANPSF 302 Query: 80 --GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + + A+ L + +++ ++PGI +K A RI+T Sbjct: 303 NPELDPKADWALRNLHLFPVE-----VNTAEYEMLLRVPGIGVKSAQRIIT 348 >gi|293395809|ref|ZP_06640091.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] gi|291421746|gb|EFE94993.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] Length = 77 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Query: 128 LKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 +K + L+ + + S ++ A A SALV LGY +A+ V + K Sbjct: 1 MKDRFKGLNGDLFNNSSEISLPASATQTPEADAEAEAASALVALGYKPQEASRMVSKIAK 60 Query: 187 KEKNIADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 61 ---PGADCETLIRDALRA 75 >gi|163815611|ref|ZP_02206984.1| hypothetical protein COPEUT_01786 [Coprococcus eutactus ATCC 27759] gi|158449248|gb|EDP26243.1| hypothetical protein COPEUT_01786 [Coprococcus eutactus ATCC 27759] Length = 516 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 20/111 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFL-----SDLDRQWFMLLQ 76 V Y Y PI S L +G L E + Q L +GF + + Sbjct: 335 VFYSAYIPINDDSALPSLGTEVPLLREHRLYQADWLLRYYGFRADEIVTADEPNL----- 389 Query: 77 SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 Q + + A+ L + + ++ +IPGI K A+RI+ Sbjct: 390 -DQRMDPKCNWAVRHLDQFPVE-----VQTAPYDLLLRIPGIGPKSAARIV 434 >gi|304436463|ref|ZP_07396437.1| RecD/TraA family helicase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370509|gb|EFM24160.1| RecD/TraA family helicase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 723 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 73 MLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT---- 126 L S ++G+G +A ++ R L +I + + ++ GI K A +I Sbjct: 95 RFLSSGVIEGIGPAMARRIVERFGTDTLK--VIESTPRRLTEVTGIGPKTAEKITASYLR 152 Query: 127 --ELKG 130 EL+ Sbjct: 153 QSELRD 158 >gi|313125020|ref|YP_004035284.1| excinuclease ABC subunit c [Halogeometricum borinquense DSM 11551] gi|312291385|gb|ADQ65845.1| Excinuclease ABC subunit C [Halogeometricum borinquense DSM 11551] Length = 581 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 16/93 (17%) Query: 47 LFVETHMRQDQIRLFGFL-----SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101 L V +R + R F + D +L V GVG + +L R + E V + Sbjct: 498 LHVLQRVRDEAHR---FAVQYHQTLRD-DVRTVLDDVPGVGEKTRRALLRRFGSVENVRA 553 Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 + + +PG+ K A TELK + Sbjct: 554 ATTAD---LTDVPGVGEKTA----TELKQRLSG 579 >gi|227498343|ref|ZP_03928493.1| helicase [Acidaminococcus sp. D21] gi|226903805|gb|EEH89723.1| helicase [Acidaminococcus sp. D21] Length = 722 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++GVG +A ++ II ++ + + ++PGI K A I+ Sbjct: 92 IKGVGPAMAQRIVDCFGEDTFR--IIDEHPERLREVPGIGKKKAEDII 137 >gi|255282586|ref|ZP_05347141.1| radical SAM domain protein [Bryantella formatexigens DSM 14469] gi|255266879|gb|EET60084.1| radical SAM domain protein [Bryantella formatexigens DSM 14469] Length = 535 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 18/105 (17%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82 Y P+ S L G L E + Q L +GF +D +R F Sbjct: 361 YVPLNEDSALPAPGTPAPLLREHRLYQADWLLRFYGFQADELLTIERPNFNEQLD----- 415 Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I +I ++PG+ K A RI+ Sbjct: 416 PKCDWALRHLELFPVE-----INRAPYDMILRVPGVGPKSAMRIV 455 >gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23] gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23] Length = 575 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + V GVG + A G+ L + +L E++ + + ++ G K A RI Sbjct: 93 LEVMEVPGVGPKTARGLYEALGIDSLEKLKEALERGD---LLRLKGFGAKKAERI 144 >gi|292657114|ref|YP_003537011.1| excinuclease ABC subunit C [Haloferax volcanii DS2] gi|291372136|gb|ADE04363.1| excinuclease ABC subunit C [Haloferax volcanii DS2] Length = 579 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 19/111 (17%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV----QGVG 82 ++ P RT D L V +R + R F + +++V GVG Sbjct: 483 LVVTPDRTFDW---PDDAPHLHVLQRVRDEAHR---FAVQYHQTLRDEVKTVLDDVPGVG 536 Query: 83 ARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 + +L+R + + E+ +++ + +PG+ K A ELK + Sbjct: 537 EKTRRALLTRFGSVEGVREA-SVED---LTDVPGVGEKTAD----ELKRRL 579 >gi|160894385|ref|ZP_02075162.1| hypothetical protein CLOL250_01938 [Clostridium sp. L2-50] gi|156864086|gb|EDO57517.1| hypothetical protein CLOL250_01938 [Clostridium sp. L2-50] Length = 522 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y Y P+ S L + L E + Q L +GF +D +R F + Sbjct: 341 VFYSAYIPVNEDSALPSLATPVPLLREHRLYQADWLLRFYGFQADELLSEERPNFNV--- 397 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + + A+ L + + + + ++PGI K A RI+ Sbjct: 398 --RMDPKCDWAIRHLEQFPIE-----VQTASYDTLLRVPGIGPKSAGRIV 440 >gi|163782603|ref|ZP_02177600.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882176|gb|EDP75683.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 581 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR--QWFMLLQSVQGVGARV---AMGV 89 L+ L IG L +E +R ++ + R + + L V G+G + A Sbjct: 55 LTKLPGIGSSTLLKIEEFLRTGTVKKY--EDLRKRVPEDLLELMDVPGIGPKTLKVAYEK 112 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TEL 128 L + + + ++ +A++PG K +I+ EL Sbjct: 113 LGVRSKEDFIRALKDG---SLAKLPGFGPKKVEKILKGIEL 150 >gi|269126428|ref|YP_003299798.1| excinuclease ABC subunit C [Thermomonospora curvata DSM 43183] gi|268311386|gb|ACY97760.1| excinuclease ABC, C subunit [Thermomonospora curvata DSM 43183] Length = 684 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 5/90 (5%) Query: 74 LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L V G+G +L + L E+ + Q IA++PGI + A +I L G A Sbjct: 592 ELDGVPGLGPARRTALLKHFGSLKRLREATVAQ----IAEVPGIGPRTAEQIAAALHGGA 647 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 + + + Sbjct: 648 PPNGRAAGKAAASRGAPPGDAPGRVPTEED 677 >gi|255027600|ref|ZP_05299586.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-003] Length = 60 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 V E + + A+ AL LGY + + + K+ +D I+LAL+ + Sbjct: 1 VAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPKLAKEADLTSD--AYIKLALQLM 58 >gi|317496898|ref|ZP_07955228.1| helix-hairpin-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895910|gb|EFV18062.1| helix-hairpin-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 497 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y Y P+ S L +G L E + Q L +GF +D DR F + Sbjct: 305 VFYSAYVPLNEDSNLPALGTAPPLLREHRLYQADWLLRFYGFKADELLSVDRPNFNTMLD 364 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + V+ ++PGI K A RI+ Sbjct: 365 -----PKCDWALRHLDIYPVE-----INRASYDVLLRVPGIGTKSAFRIV 404 >gi|167765785|ref|ZP_02437838.1| hypothetical protein CLOSS21_00276 [Clostridium sp. SS2/1] gi|167712502|gb|EDS23081.1| hypothetical protein CLOSS21_00276 [Clostridium sp. SS2/1] gi|291559148|emb|CBL37948.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif [butyrate-producing bacterium SSC/2] Length = 497 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y Y P+ S L +G L E + Q L +GF +D DR F + Sbjct: 305 VFYSAYVPLNEDSNLPALGTAPPLLREHRLYQADWLLRFYGFKADELLSVDRPNFNTMLD 364 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + V+ ++PGI K A RI+ Sbjct: 365 -----PKCDWALRHLDIYPVE-----INRASYDVLLRVPGIGTKSAFRIV 404 >gi|198284782|ref|YP_002221103.1| PHP domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666221|ref|YP_002427466.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249303|gb|ACH84896.1| PHP domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518434|gb|ACK79020.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 576 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 12/108 (11%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQSVQGVGARVAMGV-- 89 L+ L IG+ + + FL L++Q L V G+G + + Sbjct: 56 LTELPGIGEDLAKKIIEIVTTGHCS---FLEKLEKQTPPALTELLKVPGLGPKRVKALWH 112 Query: 90 -LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 L T +L + I IPG K +RI+ L+ + ++ Sbjct: 113 ELDVETVDQLTRAAREG---RIRSIPGFGEKTEARILEALQAQIAAVP 157 >gi|118777731|ref|XP_308240.3| laminin gamma 1 (AGAP007629-PA) [Anopheles gambiae str. PEST] gi|158285318|ref|XP_001687877.1| laminin gamma 1 (AGAP007629-PB) [Anopheles gambiae str. PEST] gi|116132043|gb|EAA04042.3| laminin gamma 1 (AGAP007629-PA) [Anopheles gambiae str. PEST] gi|157019934|gb|EDO64526.1| laminin gamma 1 (AGAP007629-PB) [Anopheles gambiae str. PEST] Length = 1624 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI +L K + +++ + + + + +A+ AL L Y ++QA A Sbjct: 1308 ADRIAEDLANKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 1367 Query: 181 VVS 183 V Sbjct: 1368 VAE 1370 >gi|6706335|emb|CAB66001.1| laminin gamma 1 precursor [Anopheles gambiae] Length = 1623 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI +L K + +++ + + + + +A+ AL L Y ++QA A Sbjct: 1307 ADRIAEDLANKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 1366 Query: 181 VVS 183 V Sbjct: 1367 VAE 1369 >gi|1526547|dbj|BAA13425.1| DNA polymerase family X [Thermus aquaticus] Length = 320 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + V GVG + A G+ L + +L E++ + + ++ G K A RI Sbjct: 93 LEVMEVPGVGPKTARGLYEALGIDSLEKLKEALERGD---LLRLKGFGAKKAERI 144 >gi|313115220|ref|ZP_07800703.1| excinuclease ABC subunit C [Faecalibacterium cf. prausnitzii KLE1255] gi|310622449|gb|EFQ05921.1| excinuclease ABC subunit C [Faecalibacterium cf. prausnitzii KLE1255] Length = 631 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 12/110 (10%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 ++D G I T + + I D F + +Q + + Sbjct: 528 TRAIVDSNGREIAINMNRGTFTFITAIQDETHRFANAYRKQ---------QMKQKSYSST 578 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G + A ++++ + V ++ + PG+ + A I Sbjct: 579 LTEIPGIGPKTAKALMAQFKS---VGAVKEATPDQLENTPGVGKQTAQII 625 >gi|320528995|ref|ZP_08030087.1| helicase, RecD/TraA family [Selenomonas artemidis F0399] gi|320138625|gb|EFW30515.1| helicase, RecD/TraA family [Selenomonas artemidis F0399] Length = 724 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------TELKG 130 + GVG +A ++ R A +II + ++PGI K +I+ +EL+ Sbjct: 101 IDGVGPAMARRIVDRFGAKSF--AIIETAPHRLKEVPGIGAKTLEKIVSSYMRQSELRD 157 >gi|298676088|ref|YP_003727838.1| DNA mismatch repair protein MutS domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298289076|gb|ADI75042.1| DNA mismatch repair protein MutS domain protein [Methanohalobium evestigatum Z-7303] Length = 696 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELV-ESIILQNSKVIAQIPGISMKIASRIMTELKG 130 LQ V +G + A + + E +I+ + I++I GI K A ++ E +G Sbjct: 1 MESLQDVPRIGDKTAQRFIGHFGSEEAALNAILNGDIASISEIEGIGQKFAISLVHETRG 60 >gi|219851698|ref|YP_002466130.1| Hef nuclease [Methanosphaerula palustris E1-9c] gi|219545957|gb|ACL16407.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris E1-9c] Length = 754 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 F S ++Q + ++ + +G + A +L + V ++I N +V++ I GI K A Sbjct: 687 FKSVKEQQEY-VVAAFPDIGLKNARLLLDYCGS---VRAVINANEEVLSSIRGIGEKTAQ 742 Query: 123 RIMTELKGK 131 RI+ EL + Sbjct: 743 RIV-ELANR 750 >gi|292670819|ref|ZP_06604245.1| RecD/TraA family helicase [Selenomonas noxia ATCC 43541] gi|292647440|gb|EFF65412.1| RecD/TraA family helicase [Selenomonas noxia ATCC 43541] Length = 722 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM-- 125 +R F+ ++ GVG +A ++ L II + +I GI K A +I Sbjct: 93 ER--FLASGAIDGVGPAMARRIVEHFGTEALR--IIESVPHRLREISGIGPKTAEKIASS 148 Query: 126 ----TELKG 130 +EL+ Sbjct: 149 YMRQSELRD 157 >gi|107102107|ref|ZP_01366025.1| hypothetical protein PaerPA_01003156 [Pseudomonas aeruginosa PACS2] gi|116050572|ref|YP_790609.1| excinuclease ABC subunit C [Pseudomonas aeruginosa UCBPP-PA14] gi|218891335|ref|YP_002440202.1| excinuclease ABC subunit C [Pseudomonas aeruginosa LESB58] gi|254235571|ref|ZP_04928894.1| excinuclease ABC subunit C [Pseudomonas aeruginosa C3719] gi|254241018|ref|ZP_04934340.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 2192] gi|122259695|sp|Q02N77|UVRC_PSEAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226732392|sp|B7V4X6|UVRC_PSEA8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115585793|gb|ABJ11808.1| excinuclease ABC subunit C [Pseudomonas aeruginosa UCBPP-PA14] gi|126167502|gb|EAZ53013.1| excinuclease ABC subunit C [Pseudomonas aeruginosa C3719] gi|126194396|gb|EAZ58459.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 2192] gi|218771561|emb|CAW27329.1| excinuclease ABC subunit C [Pseudomonas aeruginosa LESB58] Length = 608 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG + +L EL + I + +A+ PGIS K+A +I Sbjct: 554 TLEDVPGVGPKRRRDLLKHFGGLQELSRASIDE----LAKAPGISKKLAEQI 601 >gi|312143150|ref|YP_003994596.1| radical SAM domain protein [Halanaerobium sp. 'sapolanicus'] gi|311903801|gb|ADQ14242.1| radical SAM domain protein [Halanaerobium sp. 'sapolanicus'] Length = 415 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLDRQWFMLLQSVQGV 81 V Y Y P+ S L + L E + Q L +GF +D ++ + Sbjct: 251 VYYSAYLPVSNSSLLPALNSSPPLKREHRLYQADWLLRFYGFKADELLNLARENLDLK-L 309 Query: 82 GARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + + +++ ++PGI + A++I+ Sbjct: 310 DPKADWALNNLDKFPVE-----VNTADYQMLLRVPGIGPRSAAKIV 350 >gi|15597781|ref|NP_251275.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PAO1] gi|21264128|sp|Q9I0Q1|UVRC_PSEAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|9948648|gb|AAG05973.1|AE004687_2 excinuclease ABC subunit C [Pseudomonas aeruginosa PAO1] Length = 608 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG + +L EL + I + +A+ PGIS K+A +I Sbjct: 554 TLEDVPGVGPKRRRDLLKHFGGLQELSRASIDE----LAKAPGISKKLAEQI 601 >gi|152985488|ref|YP_001347977.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PA7] gi|189038074|sp|A6V4J2|UVRC_PSEA7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|150960646|gb|ABR82671.1| excinuclease ABC, C subunit [Pseudomonas aeruginosa PA7] Length = 608 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG + +L EL + I + +A+ PGIS K+A +I Sbjct: 554 TLEDVPGVGPKRRRDLLKHFGGLQELSRASIDE----LAKAPGISKKLAEQI 601 >gi|21220438|ref|NP_626217.1| excinuclease ABC subunit C [Streptomyces coelicolor A3(2)] gi|8134800|sp|Q9Z512|UVRC_STRCO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|4468689|emb|CAB38143.1| ABC excision nuclease subunit C [Streptomyces coelicolor A3(2)] Length = 728 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L ++ D F T+ R R F L V G+G ++ Sbjct: 598 LYLLQRVRDEAHRFAITYQR---------AKRAKR--FRAGPLDDVPGLGETRKQALIKH 646 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 + +L + I Q I ++PGI K A + L + +V ++ + Sbjct: 647 FGSVKKLRSATIDQ----ICEVPGIGRKTAETVAVALARATPAAPAVNTATGEIMDDDDG 702 Query: 152 HICSMPSFAINAISA 166 + +SA Sbjct: 703 APETTADAPGEPVSA 717 >gi|303240875|ref|ZP_07327387.1| radical SAM family protein [Acetivibrio cellulolyticus CD2] gi|302591603|gb|EFL61339.1| radical SAM family protein [Acetivibrio cellulolyticus CD2] Length = 433 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 19/123 (15%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL---DR--QWFMLLQS 77 V Y Y P+ T L I L + +R +GF S ++ + L Sbjct: 250 VYYSAYVPVSTNPKLPLISKPPLLREHRLYQADWLLRFYGFNSSELLDEKYPDFDTELD- 308 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 + A+ + I + +++ +IPG+ ++ A +I+ + K + Sbjct: 309 -----PKSSWALRNIHLFPVD-----INKADYEMLLRIPGVGVRSAQKIIAARRVKLLDF 358 Query: 136 SSV 138 + Sbjct: 359 DDL 361 >gi|256788436|ref|ZP_05526867.1| excinuclease ABC subunit C [Streptomyces lividans TK24] gi|289772326|ref|ZP_06531704.1| excinuclease ABC, C subunit [Streptomyces lividans TK24] gi|289702525|gb|EFD69954.1| excinuclease ABC, C subunit [Streptomyces lividans TK24] Length = 728 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 18/135 (13%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L ++ D F T+ R R F L V G+G ++ Sbjct: 598 LYLLQRVRDEAHRFAITYQR---------AKRAKR--FRAGPLDDVPGLGETRKQALIKH 646 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 + +L + I Q I ++PGI K A + L + +V ++ + Sbjct: 647 FGSVKKLRSATIDQ----ICEVPGIGRKTAETVAVALARATPAAPAVNTATGEIMDDDDG 702 Query: 152 HICSMPSFAINAISA 166 + +SA Sbjct: 703 APETTADAPGEPVSA 717 >gi|312880085|ref|ZP_07739885.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260] gi|310783376|gb|EFQ23774.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260] Length = 488 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL-----SDLDRQW-FMLLQSVQG 80 ++ P R + L + L + +R + R F S DR L+S+ G Sbjct: 383 ELFLPGR-ANPLRLPREDLALRLLQQVRDEAHR---FAVTSHRSRRDRLLRASRLESIPG 438 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 +G A +LSR +T ++I + +A+ PGI +A RI+T LK Sbjct: 439 IGKGKAAQLLSRFGST---KAIARMAPEDLARTPGIGTVLAQRILTALK 484 >gi|329940820|ref|ZP_08290100.1| excinuclease ABC subunit C [Streptomyces griseoaurantiacus M045] gi|329300114|gb|EGG44012.1| excinuclease ABC subunit C [Streptomyces griseoaurantiacus M045] Length = 681 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 17/135 (12%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML-LQSVQGVGARVAMGVLSRI 93 L L +I D F T+ R + ++ L V G+G ++ Sbjct: 550 LYLLQRIRDEAHRFAITYQR----------TKRAKRLRSGPLDDVPGLGETRKQALIKHF 599 Query: 94 -TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA- 151 + L + + Q I ++PGI K A I L A + +V + +E+ Sbjct: 600 GSVKRLRAATLDQ----IQEVPGIGRKTAETIAVALARSAPAAPAVNTATGEIIEEEEPV 655 Query: 152 HICSMPSFAINAISA 166 +SA Sbjct: 656 GPAGTADPPQEPVSA 670 >gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus SA-01] gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01] Length = 575 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRI-----MT 126 + V GVG + A + L + +L E++ + + ++ G K A RI + Sbjct: 95 VMEVPGVGPKTARQLYDELGIDSLEKLREALDRGD---LLRLKGFGQKKAERIREGLALV 151 Query: 127 ELKGKAISLSSVVQ 140 ++ GK L +V+ Sbjct: 152 QVAGKRRPLGAVLS 165 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQN-----SKVIAQIPGISMKIASRIMTE 127 L ++ G+G +A +L + E+ + L + ++PG+ K A ++ E Sbjct: 53 EALLALPGIGPDLAEKILEFLKTGEIKKHRELAERVPKGVLAVMEVPGVGPKTARQLYDE 112 Query: 128 L 128 L Sbjct: 113 L 113 >gi|288561345|ref|YP_003424831.1| Hef nuclease [Methanobrevibacter ruminantium M1] gi|288544055|gb|ADC47939.1| Hef nuclease [Methanobrevibacter ruminantium M1] Length = 842 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++Q F+ ++S+ +G A +L + V++++ + K + ++ GI K A I Sbjct: 769 EQQLFI-IESLPNIGPVHAKNLLEHFGS---VKAVLQADEKQLQEVDGIGKKTAKSI 821 >gi|225573018|ref|ZP_03781773.1| hypothetical protein RUMHYD_01209 [Blautia hydrogenotrophica DSM 10507] gi|225039615|gb|EEG49861.1| hypothetical protein RUMHYD_01209 [Blautia hydrogenotrophica DSM 10507] Length = 492 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 18/105 (17%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82 Y P+ L ++G L E + Q L +GF ++ R F +L Sbjct: 305 YIPLNEDPLLPELGTAPPLLREHRLYQADWLLRYYGFQAEELLSPQRPNFNVLLD----- 359 Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L E+ + + + ++PGI +K A RI+ Sbjct: 360 PKCDWALRHLETFPV-EINRATYEE----LLKVPGIGVKSAMRII 399 >gi|297571562|ref|YP_003697336.1| competence protein ComEA helix-hairpin-helix repeat protein [Arcanobacterium haemolyticum DSM 20595] gi|296931909|gb|ADH92717.1| competence protein ComEA helix-hairpin-helix repeat protein [Arcanobacterium haemolyticum DSM 20595] Length = 284 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ+V G+G A ++ ++ + +I GI K RI Sbjct: 231 ELQTVPGIGPATAAAIVQWREKNGKFAAVDD-----LTRISGIGEKTIERI 276 >gi|169830983|ref|YP_001716965.1| RecD/TraA family helicase [Candidatus Desulforudis audaxviator MP104C] gi|169637827|gb|ACA59333.1| helicase, RecD/TraA family [Candidatus Desulforudis audaxviator MP104C] Length = 688 Score = 44.3 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 68 DRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 + L S ++GVG +A ++S + V +I L++ V+ ++ GI K Sbjct: 71 EEAAADFLSSGLIKGVGPVLAERIVSVLGPNA-VSAI-LEDPDVLKKVKGIGKK 122 >gi|296388947|ref|ZP_06878422.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PAb1] gi|313107618|ref|ZP_07793803.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 39016] gi|310880305|gb|EFQ38899.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 39016] Length = 608 Score = 44.3 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG + +L EL + I + +A+ PGIS K+A +I Sbjct: 554 TLEDVPGVGPKRRRDLLKYFGGLQELSRASIDE----LAKAPGISKKLAEQI 601 >gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192] gi|306532232|gb|ADN01766.1| DNA ligase [Spirochaeta thermophila DSM 6192] Length = 673 Score = 44.3 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 76 QSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + VG V ++ L+E + + ++ GI K A +++ L+ Sbjct: 506 LGIPDVGPSVVETLIRGGITGIDRLLEIADRGDVDALTRLEGIGEKTARQLIETLRD 562 >gi|258645584|ref|ZP_05733053.1| helicase, RecD/TraA family [Dialister invisus DSM 15470] gi|260402942|gb|EEW96489.1| helicase, RecD/TraA family [Dialister invisus DSM 15470] Length = 709 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 37/133 (27%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 ++++ L G+G +A ++ L I +N ++++ GI K R Sbjct: 79 ADEVEQFLASGLI--SGIGPSMAKRIVQHFGKKTLE--IFERNIDALSEVSGIGQKTLER 134 Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA--- 180 I K S S I L +LG + A Sbjct: 135 I----KD----------------------SYSGISAMQEVIMFLQSLGISERFALPMQQL 168 Query: 181 ----VVSVLKKEK 189 V+ V++++ Sbjct: 169 YGDDVMKVVREDP 181 >gi|268317536|ref|YP_003291255.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252] gi|262335070|gb|ACY48867.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252] Length = 385 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 66 DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + + L V GVG +L+R + ++ + + Q+PGI ++ A RI Sbjct: 24 AEELRALVALTLVPGVGPGRIRALLARFGS---AQAALHAPVAALVQVPGIGLQTARRI 79 >gi|332703906|ref|ZP_08423994.1| helicase, RecD/TraA family [Desulfovibrio africanus str. Walvis Bay] gi|332554055|gb|EGJ51099.1| helicase, RecD/TraA family [Desulfovibrio africanus str. Walvis Bay] Length = 751 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++GVG + A +++ L II + + ++ GI K RI Sbjct: 109 IKGVGPKTAEALVATFGTAVLD--IIESEPERLLEVDGIGKKTLERI 153 >gi|157364326|ref|YP_001471093.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermotoga lettingae TMO] gi|157314930|gb|ABV34029.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga lettingae TMO] Length = 180 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTE 127 + L + G+G A +L + +SI + + GI A ++ + Sbjct: 55 ATYEELLEIPGIGPAKARSILDYRESNGPFQSIED-----LTNVSGIGRATAEKMASFVD 109 Query: 128 LK 129 LK Sbjct: 110 LK 111 >gi|229820663|ref|YP_002882189.1| excinuclease ABC, C subunit [Beutenbergia cavernae DSM 12333] gi|259710335|sp|C5BV40|UVRC_BEUC1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229566576|gb|ACQ80427.1| excinuclease ABC, C subunit [Beutenbergia cavernae DSM 12333] Length = 693 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 6/91 (6%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L V G+G +L + + + + +PG + A +++ L A Sbjct: 604 TLDDVPGLGPSRQAALLQAFGSVRRIRAATPEEIAA---VPGFGRRTAEQVLAAL---AP 657 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 S + + A + +A+ Sbjct: 658 SPDDATTEPGAVGEPGTADGAAADPDGRDAV 688 >gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631] gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM 5631] Length = 736 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + S+ +G +A +L + +E+I + + + ++P + K A +I+ Sbjct: 674 VSSISDIGPVIARNLLEHF---QTIENIAKASVEDLMKVPKVGKKTAEKIV 721 >gi|224023312|ref|ZP_03641678.1| hypothetical protein BACCOPRO_00005 [Bacteroides coprophilus DSM 18228] gi|224016534|gb|EEF74546.1| hypothetical protein BACCOPRO_00005 [Bacteroides coprophilus DSM 18228] Length = 753 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 35/159 (22%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI------------- 124 V+G+G + A ++ + E ++ I + + + ++PGI K +I Sbjct: 90 VKGIGPKFAQLIVRQFGL-ETIDVIET-DIERLYEVPGIGKKRVEKIRESWEKQKDIKNV 147 Query: 125 MTELKG---------KAISLSSVVQQDMSCVNK--EQAHICSMPSFAINAISALVNLGYG 173 M L+G K D N I + + I+A +GY Sbjct: 148 MLFLQGYGVSTAYAAKIYRQYGKESIDKVKENPYRLADDIWGIGFKTADGIAA--KMGYE 205 Query: 174 QDQATT-------AVVSVLKKEKNIADDSQIIRLALRAI 205 ++ + + + A++ Q+++ AL + Sbjct: 206 KNDLRRCKSGIIYTLNQLANEGHVYAEEEQLVKAALELL 244 >gi|169333819|ref|ZP_02861012.1| hypothetical protein ANASTE_00205 [Anaerofustis stercorihominis DSM 17244] gi|169259384|gb|EDS73350.1| hypothetical protein ANASTE_00205 [Anaerofustis stercorihominis DSM 17244] Length = 737 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 V G+G + A ++ L I+ ++ ++++ GI K A + E K Sbjct: 89 VGGIGPKKAKEIVDHFGDKTLE--ILEKDPMRLSEVKGIGKKTALLVGLEYKN 139 >gi|206901843|ref|YP_002251194.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12] gi|226698348|sp|B5YF86|UVRC_DICT6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|206740946|gb|ACI20004.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12] Length = 599 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 15/107 (14%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQG 80 I+ P R+ L L + +R + R F R+ L + G Sbjct: 495 EIFVPGRSEPILLSYDSPA-LHLLQQVRDEAHR---FAVSYHRKLRSKKLMDSHLDKIPG 550 Query: 81 VGARVAMGVLSRITA-TELVESIILQNSKVIAQIPGISMKIASRIMT 126 VG + +L + L ++ L++ + ++PGIS KIA +I Sbjct: 551 VGEKRMKILLEAFSTLENLKKA-SLED---LKKVPGISEKIAEKIYL 593 >gi|326202131|ref|ZP_08192001.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325987926|gb|EGD48752.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 461 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 21/112 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQG-- 80 V Y + P T L + L + +R +GF +D L S Sbjct: 249 VYYSAFVPTVTDPRLPALIKPPLLREHRLYQADWLLRFYGFEADE-------LLSKSNPN 301 Query: 81 ----VGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + + AM L + +++ ++PGI +K A RI+T Sbjct: 302 FNPELDPKADWAMRNLHMFPIE-----VNSAEYELLLRVPGIGVKSAQRIIT 348 >gi|302873877|ref|YP_003842510.1| Elongator protein 3/MiaB/NifB [Clostridium cellulovorans 743B] gi|307689876|ref|ZP_07632322.1| Elongator protein 3/MiaB/NifB [Clostridium cellulovorans 743B] gi|302576734|gb|ADL50746.1| Elongator protein 3/MiaB/NifB [Clostridium cellulovorans 743B] Length = 468 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 17/109 (15%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIRLFGFLSDL---DRQW-FMLLQSV 78 V Y Y P+ T L ++ TL + D +R++GF ++ ++ F + Sbjct: 250 VYYSAYIPVNTGKNLPELKAPPTLREHRLYQGDWLLRVYGFKAEELLNEKNPNFD--INF 307 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ + I K + +IPGI ++ A +I+ Sbjct: 308 D---PKTTYALNNMDLFPVE-----INKAPYKTLIRIPGIGIRGAQKIV 348 >gi|260434379|ref|ZP_05788349.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109] gi|260412253|gb|EEX05549.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109] Length = 661 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 7/89 (7%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 +R L + GVG + +L+ + +++I L + + +++ PG+ +A + Sbjct: 580 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQLASVETLSKAPGVGPALAR----D 632 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSM 156 + D +EQ S Sbjct: 633 IHDFFHPSDDGTDADARAALEEQPQELSA 661 >gi|170742375|ref|YP_001771030.1| RecD/TraA family helicase [Methylobacterium sp. 4-46] gi|168196649|gb|ACA18596.1| helicase, RecD/TraA family [Methylobacterium sp. 4-46] Length = 736 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 G+G ++A +++ + ++I N + + ++PGI A+R++ Sbjct: 111 GIGPQMAKRIVAAFGSETF--AVIEANPERLTEVPGIGPTRAARLV 154 >gi|331084119|ref|ZP_08333226.1| hypothetical protein HMPREF0992_02150 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402481|gb|EGG82051.1| hypothetical protein HMPREF0992_02150 [Lachnospiraceae bacterium 6_1_63FAA] Length = 492 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 18/105 (17%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82 Y P+ S L L E + Q L +GF ++ ++ F LL Sbjct: 305 YIPLNEDSLLPSPDTPPPLLREHRLYQADWLLRYYGFHAEELLSPEKPNFNLLLD----- 359 Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + + + ++PGI K A RI+ Sbjct: 360 PKCEWALRHLDQFPIE-----VSTASYSQLLKVPGIGNKSALRIV 399 >gi|260588713|ref|ZP_05854626.1| radical SAM domain protein [Blautia hansenii DSM 20583] gi|260540895|gb|EEX21464.1| radical SAM domain protein [Blautia hansenii DSM 20583] Length = 546 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 18/105 (17%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82 Y P+ S L L E + Q L +GF ++ ++ F LL Sbjct: 359 YIPLNEDSLLPSPDTPPPLLREHRLYQADWLLRYYGFHAEELLSPEKPNFNLLLD----- 413 Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + + + ++PGI K A RI+ Sbjct: 414 PKCEWALRHLDQFPIE-----VSTASYSQLLKVPGIGNKSALRIV 453 >gi|307718783|ref|YP_003874315.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192] gi|306532508|gb|ADN02042.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192] Length = 800 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 5 IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 ++G + + +DYV +D V Y PI L K+GD + + D L Sbjct: 265 VEGTVIEINKDYVYLD---VGYKSEGQVPISDFDTLPKVGDTVPVVILRKETADGHIL 319 >gi|78212893|ref|YP_381672.1| excinuclease ABC subunit C [Synechococcus sp. CC9605] gi|119367855|sp|Q3AJW5|UVRC_SYNSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78197352|gb|ABB35117.1| excinuclease ABC, C subunit [Synechococcus sp. CC9605] Length = 661 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 7/89 (7%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 +R L + GVG + +L+ + +++I L + + +++ PG+ +A + Sbjct: 580 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQLASIETLSKAPGVGPALAR----D 632 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSM 156 + D +EQ S Sbjct: 633 IHDFFHPSDEGTDADARAALEEQPQELSA 661 >gi|257052107|ref|YP_003129940.1| DNA mismatch repair protein MutS domain protein [Halorhabdus utahensis DSM 12940] gi|256690870|gb|ACV11207.1| DNA mismatch repair protein MutS domain protein [Halorhabdus utahensis DSM 12940] Length = 664 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 L ++ GVG + A + +I + +A+ PGIS A+RI+ Sbjct: 3 LTAIPGVGEKTAASLAELDDP---AAAIENGDVAAVARAPGISQGRAARIV 50 >gi|325125883|gb|ADY85213.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 407 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 290 >gi|315185614|gb|EFU19382.1| cytidylate kinase [Spirochaeta thermophila DSM 6578] Length = 800 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 5 IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 ++G + + +DYV +D V Y PI L K+GD + + D L Sbjct: 265 VEGTVIEINKDYVYLD---VGYKSEGQVPISDFDTLPKVGDTVPVVILRKETADGHIL 319 >gi|313895725|ref|ZP_07829281.1| helicase, RecD/TraA family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975851|gb|EFR41310.1| helicase, RecD/TraA family [Selenomonas sp. oral taxon 137 str. F0430] Length = 724 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------TELKG 130 + GVG +A ++ R A +II + ++PGI K +I+ +EL+ Sbjct: 101 IDGVGPAMARRIVDRFGAKSF--AIIETAPHRLKEVPGIGAKTLKKIVSSYMRQSELRD 157 >gi|217967867|ref|YP_002353373.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724] gi|217336966|gb|ACK42759.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724] Length = 598 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 15/107 (14%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQG 80 I+ P + S L L + +R + R F R+ L+ + G Sbjct: 494 EIFVPGNSDSILLPYDSPA-LHLLQQVRDEAHR---FAVSYHRKLRSKKLIDSHLEKIPG 549 Query: 81 VGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +G + +L L ++ L++ + +IPGIS KIA +I Sbjct: 550 IGEKRMKILLEAFNDLESLKKA-SLED---LKKIPGISEKIAEKIYL 592 >gi|38196141|gb|AAR13758.1| laminin [Anopheles gambiae] Length = 294 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI +L K + +++ + + + + +A+ AL L Y ++QA A Sbjct: 168 ADRIAEDLANKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 227 Query: 181 VVS 183 V Sbjct: 228 VAE 230 >gi|38196137|gb|AAR13756.1| laminin [Anopheles gambiae] gi|38196139|gb|AAR13757.1| laminin [Anopheles gambiae] Length = 294 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI +L K + +++ + + + + +A+ AL L Y ++QA A Sbjct: 168 ADRIAEDLANKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 227 Query: 181 VVS 183 V Sbjct: 228 VAE 230 >gi|313901936|ref|ZP_07835353.1| PHP domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467782|gb|EFR63279.1| PHP domain protein [Thermaerobacter subterraneus DSM 13965] Length = 677 Score = 43.1 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 20/137 (14%) Query: 75 LQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 L S+ G+G +A + EL + + + +PG+ + A+R+ EL Sbjct: 106 LLSLPGIGPAIAAKIRDFYATGSTRLLDELRARVPAG-VQALLAVPGLGPRTAARLFHEL 164 Query: 129 K-GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL------VNLGYGQDQATTAV 181 +L ++ + A+ L +NLG +A Sbjct: 165 GIDSPAALRDALEDGRVAALPGMGE--ARTRKLREALDRLDREGRWLNLG----EALAVA 218 Query: 182 VSVLKKEKNIADDSQII 198 +V ++ + + Sbjct: 219 SAVAEELGRQPGVVEAL 235 >gi|125972928|ref|YP_001036838.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|256005419|ref|ZP_05430383.1| radical SAM domain-containing protein [Clostridium thermocellum DSM 2360] gi|281417123|ref|ZP_06248143.1| radical SAM domain-containing protein [Clostridium thermocellum JW20] gi|125713153|gb|ABN51645.1| Radical SAM [Clostridium thermocellum ATCC 27405] gi|255990645|gb|EEU00763.1| radical SAM domain-containing protein [Clostridium thermocellum DSM 2360] gi|281408525|gb|EFB38783.1| radical SAM domain-containing protein [Clostridium thermocellum JW20] gi|316940836|gb|ADU74870.1| radical SAM domain-containing protein [Clostridium thermocellum DSM 1313] Length = 435 Score = 43.1 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 17/122 (13%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL---DRQW-FMLLQSV 78 V Y Y P+ L + L + +R +GF +D +R F Sbjct: 250 VYYSAYVPVSKNPLLPDLKTPPLLREHRLYQADWLLRFYGFSADELLDERNPDFDPKLD- 308 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 + A+ +S I + +++ ++PGI ++ A +I+ K K++S Sbjct: 309 ----PKTNWAINNMSLFPVE-----INRADYEMLLRVPGIGVRSAKKIIMARKVKSLSFE 359 Query: 137 SV 138 + Sbjct: 360 DL 361 >gi|229829629|ref|ZP_04455698.1| hypothetical protein GCWU000342_01726 [Shuttleworthia satelles DSM 14600] gi|229791618|gb|EEP27732.1| hypothetical protein GCWU000342_01726 [Shuttleworthia satelles DSM 14600] Length = 750 Score = 43.1 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 ++GVG ++A ++ ++ ++ +++I GIS K+A Sbjct: 87 IKGVGPKLAARIVKTFKGDTFR--VMEEDPTRLSKIKGISEKMA 128 >gi|160876640|ref|YP_001555956.1| RuvA domain-containing protein [Shewanella baltica OS195] gi|160862162|gb|ABX50696.1| RuvA domain protein [Shewanella baltica OS195] gi|315268839|gb|ADT95692.1| RuvA domain protein [Shewanella baltica OS678] Length = 307 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 E I +AI AL++LGY +A V LK+ +II+ A Sbjct: 251 NESKSIIDFKETQNDAIHALISLGYSSSKAKEVV---LKQSNQRLTAEEIIKKA 301 >gi|163750735|ref|ZP_02157971.1| atp-dependent rna helicase, eif-4a family protein [Shewanella benthica KT99] gi|161329579|gb|EDQ00571.1| atp-dependent rna helicase, eif-4a family protein [Shewanella benthica KT99] Length = 212 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 RQ F+ LQS+ VG ++A +LS +E+I + + ++ GI + A +I Sbjct: 155 RQLFI-LQSLPQVGPKLAKRLLSHFDN---IEAIFTAPAAELRKVEGIGQEKAQKI 206 >gi|206889916|ref|YP_002248854.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741854|gb|ACI20911.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 400 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 17/122 (13%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL----DRQWFMLLQSV 78 V Y Y P+ L +I L + IR +GF ++ ++ + Sbjct: 244 VYYSAYIPVNDDPRLPQISKPPLLKEHRLYQADWLIRYYGFHTEEIVSDEKPYLDEKID- 302 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 ++ A+ ++ I + + + ++PGI A RI+ E K ++L Sbjct: 303 ----PKLDWALKNINLFPIE-----IQKASFETLLRVPGIGPTSAKRILKERKNTMLTLD 353 Query: 137 SV 138 + Sbjct: 354 GL 355 >gi|313122968|ref|YP_004033227.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279531|gb|ADQ60250.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 424 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 204 LETKEADIIDFLKGLSGIGKKRANDIAQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 263 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E +S + + + +++ IPGI A RI++EL Sbjct: 264 AEEECQSALQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 307 >gi|271967322|ref|YP_003341518.1| excinuclease ABC subunit C [Streptosporangium roseum DSM 43021] gi|270510497|gb|ACZ88775.1| excinuclease ABC, C subunit [Streptosporangium roseum DSM 43021] Length = 649 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 16/102 (15%) Query: 31 PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM-LLQSVQGVGARVAMGV 89 L L ++ D F T+ R S + L V G+G + Sbjct: 559 SSEALYLLQRVRDEAHRFAITYHR----------SKRSKSVKESALDEVPGLGPARRQAL 608 Query: 90 LSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + + L E+ Q I +IPGI A I++ LKG Sbjct: 609 IKHFGSVKRLREATAAQ----ICEIPGIGPATAETIVSALKG 646 >gi|17230579|ref|NP_487127.1| hypothetical protein all3087 [Nostoc sp. PCC 7120] gi|17132181|dbj|BAB74786.1| all3087 [Nostoc sp. PCC 7120] Length = 542 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 S +T T++V I + + +PG+ K+A +I+ Sbjct: 475 SELTPTQVVN-INTADLAELETLPGVGKKLAQKIII 509 >gi|269836449|ref|YP_003318677.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745] gi|269785712|gb|ACZ37855.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745] Length = 609 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 14/90 (15%) Query: 46 TLFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQGVGARVAMGVLSRI-TATEL 98 +LF+ +R + R F + F L ++GVG +L + + Sbjct: 525 SLFLVQRVRDEAHR---FAVTFHRKRRTKSTFRSALDGLKGVGPARRKALLKTFGSVARI 581 Query: 99 VESIILQNSKVIAQIPGISMKIASRIMTEL 128 ++ + + +A +PGI ++A +I EL Sbjct: 582 RQASVEE----LAAVPGIGPRLAEQIKEEL 607 >gi|160944154|ref|ZP_02091384.1| hypothetical protein FAEPRAM212_01661 [Faecalibacterium prausnitzii M21/2] gi|158444830|gb|EDP21834.1| hypothetical protein FAEPRAM212_01661 [Faecalibacterium prausnitzii M21/2] Length = 787 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F+ +S+ +GAR A ++ A L +I + + +IPGIS A RI E K Sbjct: 130 FLASRSLPYIGARTADKIIDMFGAEALE--VIANDPARLTKIPGISPDKADRIQQEFK 185 >gi|315187042|gb|EFU20799.1| DNA ligase, NAD-dependent [Spirochaeta thermophila DSM 6578] Length = 697 Score = 42.7 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 76 QSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + VG V ++ + L + + + ++ GI K A ++M L+ Sbjct: 506 LGIPEVGPSVVETLIRGGITSIDRLFTIADRGDVEALTRLEGIGEKTARQLMETLRD 562 >gi|217076174|ref|YP_002333890.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B] gi|217036027|gb|ACJ74549.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B] Length = 191 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 13/78 (16%) Query: 75 LQSVQGVGARVAMGVLSRITA-----------TELVES-IILQNSKVIAQIPGISMKIAS 122 L +V G+G + +T EL + I + K + ++PGI A Sbjct: 94 LINVTGIGPSTLEKIRDYVTVSKTNEVQINMNNELKKININKADEKQLEKLPGIGPTKAK 153 Query: 123 RIMTELKGKAISLSSVVQ 140 RI+ E + K +S+ + Sbjct: 154 RII-EYREKNGKFNSLNE 170 >gi|313123289|ref|YP_004033548.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279852|gb|ADQ60571.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 343 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 290 >gi|330984243|gb|EGH82346.1| hypothetical protein PLA107_04349 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 613 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 69 RQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 R+ + S+ G+GA A + S + + +++ ++K I + GI K A RI Sbjct: 544 REAAEYVVGSLPGIGAGNATKLFSHFGS---IHAVMTASAKEIMGVKGIGPKTAQRI 597 >gi|55379467|ref|YP_137317.1| mismatch repair protein [Haloarcula marismortui ATCC 43049] gi|55232192|gb|AAV47611.1| mismatch repair protein [Haloarcula marismortui ATCC 43049] Length = 692 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+SV GVGA+ A + ++ + +A+ PGIS A+RI Sbjct: 6 ELESVPGVGAKTAAALRELDDPE---AALRDGDVASLARAPGISEGRAARI 53 >gi|331084623|ref|ZP_08333711.1| hypothetical protein HMPREF0987_00014 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410717|gb|EGG90139.1| hypothetical protein HMPREF0987_00014 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 486 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 24/129 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRL--FGFLSDL---DRQW-FMLLQ 76 V Y + + L G+ L E + Q L +GF ++ ++Q F +L Sbjct: 284 VFYSAFVHVNEDKALPAAGEQGPPLLREHRLYQADWLLRYYGFRAEELLDEQQPNFNVLL 343 Query: 77 SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 + A+ L + + + ++PGI K A RI+ KA Sbjct: 344 D-----PKCNWALKHLEYFPVE-----VNQADYFTLLRVPGIGYKSAERIV-----KARR 388 Query: 135 LSSVVQQDM 143 + S+ +D+ Sbjct: 389 MGSLSFEDL 397 >gi|255994367|ref|ZP_05427502.1| competence protein CelA [Eubacterium saphenum ATCC 49989] gi|255993080|gb|EEU03169.1| competence protein CelA [Eubacterium saphenum ATCC 49989] Length = 211 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 11/57 (19%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKV---IAQIPGISMKIASRIMTE 127 LQ+V G+G A ++ N K + ++PGI K +++ E Sbjct: 160 KLQTVNGIGPATAEKIIDYREN--------NGNFKKVEDLVKVPGIGPKTVQKLIKE 208 >gi|89073042|ref|ZP_01159589.1| excinuclease ABC subunit C [Photobacterium sp. SKA34] gi|89051260|gb|EAR56716.1| excinuclease ABC subunit C [Photobacterium sp. SKA34] Length = 589 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125 L+ V+G+G + +L + EL ++ N + IA++PGIS +A +I+ Sbjct: 536 LEDVEGIGPKRRQALLKYMGGMQELKKA----NKEEIAKVPGISPALAEKIV 583 >gi|227538460|ref|ZP_03968509.1| SMF family DNA processing protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241646|gb|EEI91661.1| SMF family DNA processing protein [Sphingobacterium spiritivorum ATCC 33300] Length = 370 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V+G+G R++ +LS A VE+I + K + IPGI+M I R+ Sbjct: 9 LTKVKGIGPRLSRSLLSHCDA---VEAIFTASKKQLLTIPGINMAIIERL 55 >gi|313114613|ref|ZP_07800121.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623077|gb|EFQ06524.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 468 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 29/137 (21%) Query: 61 FG-FLSDLDRQWFMLLQSVQGVGARVAMGV-----LSRITATELVES-IILQNSKVIAQI 113 +G F D++R F +L V G+G + A + LS + EL ++L+ ++ Sbjct: 337 YGLFPVDVNRAPFEMLLRVPGIGPKSARRIWHARKLSSLGLDELKRMGVVLKRAQYFITC 396 Query: 114 PGI-----SMKIA--SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 G A RI +++ ++ + EQ + + P A+ Sbjct: 397 KGFAGAHPGRGTAGRERI----------TQALIDPNVFGGSCEQLSLFTPP-----AVDD 441 Query: 167 LVNLGYGQDQATTAVVS 183 L+ G A V Sbjct: 442 LITQGVAPRAAMRMVRE 458 >gi|256419940|ref|YP_003120593.1| recombination protein RecR [Chitinophaga pinensis DSM 2588] gi|256034848|gb|ACU58392.1| recombination protein RecR [Chitinophaga pinensis DSM 2588] Length = 205 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 98 LVESIILQNSKVIAQIPGISMKIASRIMTEL 128 ++I A++PGI K A R++ L Sbjct: 3 FSSALIENAVNEFARLPGIGKKTALRLVLHL 33 >gi|108803335|ref|YP_643272.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941] gi|108764578|gb|ABG03460.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941] Length = 574 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 7/97 (7%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L V G+G R + L +A EL + + + PG K R + E Sbjct: 94 RGLLGVPGLGPRRVRELHRRLGVESAAELERAAREGRVRRL---PGFGAKT-ERNILEAL 149 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 G+ + A+ A Sbjct: 150 GRKERPQRFRLSAAEPAARALEEHLEGCGAVREAVVA 186 >gi|220903857|ref|YP_002479169.1| excinuclease ABC subunit C [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868156|gb|ACL48491.1| excinuclease ABC, C subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 687 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 13/110 (11%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM------LLQSVQG 80 I+ P R + + G LF+ ++R R F R+ L + G Sbjct: 583 RIFVPNRANALPLREGGQELLFL-QNIRDTTHR---FAIGRHRKARRGAALAGELMRLPG 638 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 VG A + + E + + ++ + +IPGI AS ++ +L G Sbjct: 639 VGPATARLLWDHFGSVEAMCAATQED---LRKIPGIGPAKASMLLEKLSG 685 >gi|325661793|ref|ZP_08150416.1| hypothetical protein HMPREF0490_01151 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472046|gb|EGC75261.1| hypothetical protein HMPREF0490_01151 [Lachnospiraceae bacterium 4_1_37FAA] Length = 486 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 24/129 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCT-LFVETHMRQDQIRL--FGFLSDL---DRQW-FMLLQ 76 V Y + + L G+ L E + Q L +GF ++ ++Q F +L Sbjct: 284 VFYSAFVHVNEDKALPAAGEQGPPLLREHRLYQADWLLRYYGFRAEELLDEQQPNFNVLL 343 Query: 77 SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 + A+ L + + + ++PGI K A RI+ KA Sbjct: 344 D-----PKCNWALKHLEYFPVE-----VNRADYFTLLRVPGIGYKSAERIV-----KARR 388 Query: 135 LSSVVQQDM 143 + S+ +D+ Sbjct: 389 MGSLSFEDL 397 >gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA] gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA] Length = 663 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 52/221 (23%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------- 74 GV Y +C TLSC ++ V + +D + + GF Q F Sbjct: 415 NGVHY--FC-ENTLSCKPQM---VKTIVH-YASRDAMNIEGFSEKTAEQLFEKLDIKSIA 467 Query: 75 ---------LQSVQGVGARVAMGVLSRITAT---ELVESIILQNSKVIAQIPGISMKIAS 122 L + G + A +L + + EL I IP + +K A Sbjct: 468 DLYKLQKEELLQLDKFGPKKAQNLLDAVEKSKDCELYRFIYS------LGIPNVGVKTAK 521 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISA---LVNLGYG 173 +L K SL + + Q + + A++ L+ LG Sbjct: 522 ----DLVNKFKSLEGLKSASFDDLVSVQDVGGIVAKCVLEFFKEEKAVNTINELLELGVN 577 Query: 174 QDQATTAVVSVLKKEKNIADDSQI-------IRLALRAISC 207 ++S + K + + I+ L + Sbjct: 578 PKFEEKQIISSPFEGKTVVVTGTLQNYSRGEIKAKLELLGA 618 >gi|289581729|ref|YP_003480195.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099] gi|289531282|gb|ADD05633.1| DNA mismatch repair protein MutS domain protein [Natrialba magadii ATCC 43099] Length = 739 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 40/151 (26%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM-----TE-- 127 L+S+ GVG + A + ++ + IA PGI+ A+RI E Sbjct: 25 LESIPGVGEKTARALSDLDDPE---RALRAGDVATIASAPGITQGRAARIARGAIRLEHD 81 Query: 128 ---------------------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 LK + ++ + + + + ++ I + +FA AIS Sbjct: 82 DAGGFLATDRAREIYREILSLLKQRTVTDYAAQRVETFYPSSRRSRIEEVQTFAREAIS- 140 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 +A+ AV+ L+ + + + Sbjct: 141 --------REASPAVLEALEGVEPLRTPGDV 163 >gi|167769926|ref|ZP_02441979.1| hypothetical protein ANACOL_01267 [Anaerotruncus colihominis DSM 17241] gi|167667917|gb|EDS12047.1| hypothetical protein ANACOL_01267 [Anaerotruncus colihominis DSM 17241] Length = 753 Score = 41.9 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V+GVG +A ++ L +++ QN +A+I GIS K A +I E K K + S Sbjct: 106 VKGVGPAIARRLVRAFGDDTL--TVMEQNPAKLAEIQGISPKKAEQISNEYK-KLFGIRS 162 Query: 138 VV 139 V+ Sbjct: 163 VM 164 >gi|38196143|gb|AAR13759.1| laminin [Anopheles gambiae] Length = 294 Score = 41.9 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI +L K + +++ + + + + +A+ AL L Y ++QA A Sbjct: 168 ADRIAEDLATKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKA 227 Query: 181 VVS 183 V Sbjct: 228 VAE 230 >gi|313887872|ref|ZP_07821551.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846038|gb|EFR33420.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 216 Score = 41.9 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 13/24 (54%) Query: 102 IILQNSKVIAQIPGISMKIASRIM 125 I + + +IPG+ K A +I+ Sbjct: 158 INSADLSELTKIPGVGEKTAQKII 181 >gi|150005913|ref|YP_001300657.1| exonuclease V subunit alpha [Bacteroides vulgatus ATCC 8482] gi|149934337|gb|ABR41035.1| ATP-dependent exonuclease V, alpha subunit - helicase superfamily I member [Bacteroides vulgatus ATCC 8482] Length = 753 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G + A ++ + E ++ I + + + ++PGI K +I Sbjct: 90 VKGIGPKFAQLIVRQFGL-ETIDVIET-DIERLYEVPGIGKKRVEKI 134 >gi|300812541|ref|ZP_07092959.1| transposase, IS116/IS110/IS902 family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496478|gb|EFK31582.1| transposase, IS116/IS110/IS902 family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 169 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 1 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 52 >gi|116074853|ref|ZP_01472114.1| excinuclease ABC subunit C [Synechococcus sp. RS9916] gi|116068075|gb|EAU73828.1| excinuclease ABC subunit C [Synechococcus sp. RS9916] Length = 656 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 +R L + G+G + +L+ + +++I L + ++ PG+ +A +I Sbjct: 580 ERMKRSRLSDIPGLGPKRIRDLLAHFNS---IDAIQLASVDQLSVAPGVGPSLAQQI--- 633 Query: 128 LKGKAISLSSVVQQDMSCVNKE 149 + S S + E Sbjct: 634 -RDYFHPDESEAPALASTSDPE 654 >gi|325957162|ref|YP_004292574.1| transposase [Lactobacillus acidophilus 30SC] gi|325333727|gb|ADZ07635.1| transposase [Lactobacillus acidophilus 30SC] Length = 365 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 L + L+S+ G+G + A + R+ L + ++ +++ IPGI+ A R Sbjct: 187 LETKEADIIDFLKSLSGIGEKRANDLAQRL--IRLAKLAPKRDLEILKSIPGIAENTALR 244 Query: 124 IMTELKG 130 I++EL Sbjct: 245 IISELGD 251 >gi|313681124|ref|YP_004058863.1| soluble ligand binding domain [Oceanithermus profundus DSM 14977] gi|313153839|gb|ADR37690.1| Soluble ligand binding domain [Oceanithermus profundus DSM 14977] Length = 171 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 9/56 (16%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 R L++V G+G +A +++ L E + ++PGI + R+ Sbjct: 119 RASAEELEAVPGIGPALARRIVAYRPYRTLAE---------LVRVPGIGPRTLERL 165 >gi|254786407|ref|YP_003073836.1| excinuclease ABC subunit C [Teredinibacter turnerae T7901] gi|237683988|gb|ACR11252.1| excinuclease ABC, C subunit [Teredinibacter turnerae T7901] Length = 619 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 14/83 (16%) Query: 47 LFVETHMRQDQIRLFGFL---SDLDRQWFM---LLQSVQGVGARVAMGVLSRIT-ATELV 99 L + +R + R F R L+++ G+G + +L E++ Sbjct: 535 LHLIQQVRDEAHR---FAITGHKQRRDQARRTSTLENIPGIGPKRRREMLHYFGGLQEVM 591 Query: 100 ESIILQNSKVIAQIPGISMKIAS 122 + I +A++PGIS K+A Sbjct: 592 RASIDD----LAKVPGISKKMAE 610 >gi|242279487|ref|YP_002991616.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638] gi|242122381|gb|ACS80077.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638] Length = 602 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 14/94 (14%) Query: 38 LGKIGDFCTLFVETHMRQDQIRLFGF------LSDLDRQWFMLLQSVQGVGARVAMGVLS 91 L G L +R + R F S + + S+ G+G + A + Sbjct: 509 LPLKGGSPELLYLQRVRDEAHR---FVIGRQRKSRKKKVLQSEVLSLPGIGPKTARLLWD 565 Query: 92 RI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 + ++ E+ +++ ++ + GI K A +I Sbjct: 566 EFGSVQKMKEA-SVED---LSNVQGIGKKRAQQI 595 >gi|87124468|ref|ZP_01080317.1| excinuclease ABC, C subunit [Synechococcus sp. RS9917] gi|86168040|gb|EAQ69298.1| excinuclease ABC, C subunit [Synechococcus sp. RS9917] Length = 659 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R L + G+G + +L + +++I L + +A PGI +A +I Sbjct: 570 ERMKRSRLSDIPGLGPKRVRDLLGHFHS---IDAIQLAPIERLAAAPGIGRSLAEQI 623 >gi|302875860|ref|YP_003844493.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B] gi|307689293|ref|ZP_07631739.1| helicase, RecD/TraA family protein [Clostridium cellulovorans 743B] gi|302578717|gb|ADL52729.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B] Length = 737 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 VQG+G A ++ L I+ ++ + + +I GI K Sbjct: 88 VQGIGPVTARKIVQHFGNDALR--IMEEDIERLKEIEGIGAK 127 >gi|313124619|ref|YP_004034878.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281182|gb|ADQ61901.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 424 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+S+ G+G + A M + + ++ Sbjct: 204 LETKEADIIDFLKSLSGIGEKRANDLAQRLIRLAKLACPAVKKSSAHIRGLEMAINNILS 263 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E +S + + + +++ IPGI A RI++EL Sbjct: 264 AEEECQSALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 307 >gi|104773967|ref|YP_618947.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423048|emb|CAI97739.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSSHIRGLKMAINNTLS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|46204531|ref|ZP_00049860.2| COG0507: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [Magnetospirillum magnetotacticum MS-1] Length = 565 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 G+G +A +++ E V II + ++ GI K A+RI+ Sbjct: 101 GIGPAMAKRIVATFG--EAVFEIIEAEPARLTEVEGIGPKRAARIV 144 >gi|39998418|ref|NP_954369.1| radical SAM domain-containing protein [Geobacter sulfurreducens PCA] gi|39985365|gb|AAR36719.1| radical SAM domain protein [Geobacter sulfurreducens PCA] gi|298507363|gb|ADI86086.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter sulfurreducens KN400] Length = 431 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 26/128 (20%) Query: 24 VCYIIYCPIRTLSCLGKI------GDFCTLFVETHMRQDQIRLFGFLS----DLDRQWFM 73 V Y + + L + L+ +R +GF + D +R Sbjct: 252 VYYSAFISVNRDERLPAVVGTPPLAREHRLY----QADWLMRYYGFAAGELLDEERPNLD 307 Query: 74 LLQSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L + A+ L + + + + ++PGI ++ A RI+ +G Sbjct: 308 LSLD-----PKAGWALRNLHLFPVE-----VNRADYEALLRVPGIGVRSAQRIVLARRGS 357 Query: 132 AISLSSVV 139 +SL + Sbjct: 358 HLSLDDLP 365 >gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571] Length = 766 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 66 DLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R+ + S +G + A +L + ++ I+ N + + +PGI KIA + Sbjct: 701 RSERESLEYVISSFPSIGPKNARDLLDHFGS---IQDIMNANIEELKVVPGIGDKIA-KS 756 Query: 125 MTELKGK 131 + EL K Sbjct: 757 VFELSRK 763 >gi|254775922|ref|ZP_05217438.1| Holliday junction DNA helicase RuvA [Mycobacterium avium subsp. avium ATCC 25291] Length = 47 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + ALV LG+ QA A VL E A S +R AL + Sbjct: 2 VVEALVGLGFAAKQAEEATDKVLAAEPE-AGTSGALRAALSLL 43 >gi|304317599|ref|YP_003852744.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779101|gb|ADL69660.1| Radical SAM domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 424 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +V A+ LS + + ++ ++PGI +K A RI+ Sbjct: 309 PKVDWALKNLSLFPVE-----VNTADYNMLLRVPGIGVKTAKRII 348 >gi|78043654|ref|YP_360397.1| DNA polymerase family X protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995769|gb|ABB14668.1| DNA polymerase, X family [Carboxydothermus hydrogenoformans Z-2901] Length = 550 Score = 41.6 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 L + G+G + A + L E L + + +IPGI K +I+ Sbjct: 92 LLKIPGIGVKTAKQIYETYRPNTLDEVESLAKAHKLKEIPGIGSKTEQQILV 143 >gi|332970835|gb|EGK09814.1| radical SAM domain protein [Psychrobacter sp. 1501(2011)] Length = 422 Score = 41.6 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL--D-RQWFMLLQSV 78 V Y Y P+ + S L IG + E + +R +GF + + + F+ L+ Sbjct: 256 VYYSGYVPMLSDSRLPAIGTPVPMVRENRLYQADWLMRFYGFGAHEILEPKDPFLDLEC- 314 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++A + R +I +VI ++PGI +K A +I+ Sbjct: 315 ---DPKLAWAIRHR---EHFPVNIQTAPYEVIVRVPGIGVKTAKKIV 355 >gi|296269731|ref|YP_003652363.1| helicase, RecD/TraA family [Thermobispora bispora DSM 43833] gi|296092518|gb|ADG88470.1| helicase, RecD/TraA family [Thermobispora bispora DSM 43833] Length = 746 Score = 41.6 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G ++A +++ L +I + + + ++PG+ K Sbjct: 105 IKGIGPKMAERIVNHFGTDTLR--VIEEEPERLTEVPGLGPK 144 >gi|328544243|ref|YP_004304352.1| DNA polymerase [polymorphum gilvum SL003B-26A1] gi|326413985|gb|ADZ71048.1| DNA polymerase domain protein [Polymorphum gilvum SL003B-26A1] Length = 303 Score = 41.6 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 K+ IPGI K+A R+ EL ++ + ++ E A + + AI+A Sbjct: 116 EKLFQTIPGIGPKLAERLAGEL------HLETLEDLEAALHLEAAPLKGLGPRRREAITA 169 Query: 167 LVN--LG 171 ++ LG Sbjct: 170 ILAERLG 176 >gi|257387068|ref|YP_003176841.1| DNA mismatch repair protein MutS [Halomicrobium mukohataei DSM 12286] gi|257169375|gb|ACV47134.1| DNA mismatch repair protein MutS domain protein [Halomicrobium mukohataei DSM 12286] Length = 688 Score = 41.6 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+SV GVG + A + ++ + +AQ PGI Sbjct: 2 ELESVSGVGEKTAAALAELDDPE---RALREGDVATLAQAPGI 41 >gi|145629081|ref|ZP_01784880.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21] gi|144978584|gb|EDJ88307.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21] Length = 553 Score = 41.6 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 500 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 552 >gi|298246013|ref|ZP_06969819.1| PHP domain protein [Ktedonobacter racemifer DSM 44963] gi|297553494|gb|EFH87359.1| PHP domain protein [Ktedonobacter racemifer DSM 44963] Length = 589 Score = 41.6 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + + + GVG + + L T EL ++ ++ K +A+IPG K +I+ Sbjct: 92 LEMMRIPGVGPKKINAIYDQLHVTTLAELEQAC--KDDK-VAKIPGFGKKTQEKIL 144 >gi|85859218|ref|YP_461420.1| SMF family protein involved in DNA uptake [Syntrophus aciditrophicus SB] gi|85722309|gb|ABC77252.1| SMF family protein involved in DNA uptake [Syntrophus aciditrophicus SB] Length = 394 Score = 41.6 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 + ++M L+SV G+G ++ ++ + Q+ + +PGI K ASRI Sbjct: 4 DELIYWMALRSVNGIGNLGFRSLMDAFKFPHDVFHA-SYQD---LMSVPGIGPKTASRI 58 >gi|260582025|ref|ZP_05849820.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127] gi|260094915|gb|EEW78808.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127] Length = 609 Score = 41.6 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608 >gi|311898903|dbj|BAJ31311.1| putative UvrABC system protein C [Kitasatospora setae KM-6054] Length = 675 Score = 41.6 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 14/127 (11%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI- 93 L L ++ D F T+ R R L SV G+G +L Sbjct: 561 LYLLQRVRDEAHRFAITYQR---------AKRAKRLTAGELDSVPGLGETRRRALLKHFG 611 Query: 94 TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153 + +L + + + + ++PGI + A + L + S +V ++ A Sbjct: 612 SLKKLRAATVDE----LCEVPGIGRRTAETVAAALASRTPSAFAVNTATGEIIDDSTATA 667 Query: 154 CSMPSFA 160 Sbjct: 668 GPRSGEE 674 >gi|319896470|ref|YP_004134663.1| uvrabc system protein c [Haemophilus influenzae F3031] gi|317431972|emb|CBY80320.1| UvrABC system protein C [Haemophilus influenzae F3031] Length = 609 Score = 41.6 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608 >gi|257421910|ref|ZP_05598900.1| competence protein comEA [Enterococcus faecalis X98] gi|257163734|gb|EEU93694.1| competence protein comEA [Enterococcus faecalis X98] gi|315155383|gb|EFT99399.1| comEA protein [Enterococcus faecalis TX0043] Length = 225 Score = 41.6 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|189500701|ref|YP_001960171.1| excinuclease ABC subunit C [Chlorobium phaeobacteroides BS1] gi|189496142|gb|ACE04690.1| excinuclease ABC, C subunit [Chlorobium phaeobacteroides BS1] Length = 628 Score = 41.6 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 14/96 (14%) Query: 31 PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 L L +I D F T+ R L R +L + G+G + AM +L Sbjct: 532 TSPALKLLQRIRDEAHRFAITYHR----TL-----RKSRTLTTILTEIPGIGEKSAMKLL 582 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 S + +E I + K + +I + A I Sbjct: 583 SHFGS---IEQIAKADRKELMKIT--GPRTAEAIAL 613 >gi|289549356|ref|YP_003474344.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182973|gb|ADC90217.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 574 Score = 41.6 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 73 MLLQSVQGVGARV---AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TE 127 + L V G+G + A L + + V ++ V+A +PG+ K IM E Sbjct: 92 LELLDVPGIGPKTLKLAYDKLGIRSKDDFVRAVRSG---VLASLPGMGEKKLQNIMRGLE 148 Query: 128 LKGKAISLSSVVQQ 141 L +A S+++ Sbjct: 149 LYERAKERMSLIEA 162 >gi|229846976|ref|ZP_04467082.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1] gi|229810060|gb|EEP45780.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1] Length = 609 Score = 41.6 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608 >gi|332704247|ref|ZP_08424335.1| UvrABC system protein C [Desulfovibrio africanus str. Walvis Bay] gi|332554396|gb|EGJ51440.1| UvrABC system protein C [Desulfovibrio africanus str. Walvis Bay] Length = 604 Score = 41.6 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L S+ +G + A + R + + + + K IPG+ K A RI+ L Sbjct: 544 ELLSLPSIGPKTARLLWERFDSVDAMLAAAPDEIK---SIPGLGGKRAERILASLND 597 >gi|145636737|ref|ZP_01792403.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH] gi|145270035|gb|EDK09972.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH] Length = 609 Score = 41.6 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608 >gi|145635242|ref|ZP_01790946.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA] gi|145267521|gb|EDK07521.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA] Length = 609 Score = 41.6 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608 >gi|309972809|gb|ADO96010.1| Excinuclease ABC subunit C [Haemophilus influenzae R2846] Length = 609 Score = 41.6 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608 >gi|300770008|ref|ZP_07079887.1| SMF family DNA processing protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762484|gb|EFK59301.1| SMF family DNA processing protein [Sphingobacterium spiritivorum ATCC 33861] Length = 370 Score = 41.6 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V+G+G R++ +LS VE+I + K + IPGI++ I R+ Sbjct: 9 LTKVKGIGPRLSRSLLSHCDT---VEAIFTASKKQLLTIPGINIAIIERL 55 >gi|229845394|ref|ZP_04465525.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1] gi|229811702|gb|EEP47400.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1] Length = 609 Score = 41.6 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608 >gi|16272031|ref|NP_438230.1| excinuclease ABC subunit C [Haemophilus influenzae Rd KW20] gi|260580639|ref|ZP_05848466.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW] gi|1174920|sp|P44489|UVRC_HAEIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|1573005|gb|AAC21735.1| excinuclease ABC, subunit C (uvrC) [Haemophilus influenzae Rd KW20] gi|260092701|gb|EEW76637.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW] Length = 609 Score = 41.6 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608 >gi|300214767|gb|ADJ79183.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Lactobacillus salivarius CECT 5713] Length = 592 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 21/100 (21%) Query: 35 LSCLGKIGDFCTLFVETHMRQ----DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 L +I D F T RQ + + S L+R +QGVG + + +L Sbjct: 508 FYLLQRIQDEVHRFAITFHRQVRSKNSL-----ASRLER--------IQGVGPKTRIKLL 554 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + + + + +++ + + GIS K+A I LK Sbjct: 555 RNYGSLKNISAASVEDLESL----GISKKVAQTIKLSLKN 590 >gi|90962073|ref|YP_535989.1| excinuclease ABC subunit C [Lactobacillus salivarius UCC118] gi|119367662|sp|Q1WT45|UVRC_LACS1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|90821267|gb|ABD99906.1| Excinuclease ABC subunit C [Lactobacillus salivarius UCC118] Length = 590 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 21/100 (21%) Query: 35 LSCLGKIGDFCTLFVETHMRQ----DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 L +I D F T RQ + + S L+R +QGVG + + +L Sbjct: 508 FYLLQRIQDEVHRFAITFHRQVRSKNSL-----ASRLER--------IQGVGPKTRIKLL 554 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + + + + +++ + + GIS K+A I LK Sbjct: 555 RNYGSLKNISAASVEDLESL----GISKKVAQTIKLSLKN 590 >gi|301300877|ref|ZP_07207049.1| excinuclease ABC, C subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851476|gb|EFK79188.1| excinuclease ABC, C subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 592 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 21/100 (21%) Query: 35 LSCLGKIGDFCTLFVETHMRQ----DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 L +I D F T RQ + + S L+R +QGVG + + +L Sbjct: 508 FYLLQRIQDEVHRFAITFHRQVRSKNSL-----ASRLER--------IQGVGPKTRIKLL 554 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + + + + +++ + + GIS K+A I LK Sbjct: 555 RNYGSLKNISAASVEDLESL----GISKKVAQTIKLSLKN 590 >gi|229545130|ref|ZP_04433855.1| competence protein comEA [Enterococcus faecalis TX1322] gi|229309675|gb|EEN75662.1| competence protein comEA [Enterococcus faecalis TX1322] gi|315144857|gb|EFT88873.1| comEA protein [Enterococcus faecalis TX2141] Length = 225 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|227891094|ref|ZP_04008899.1| excinuclease ABC subunit C [Lactobacillus salivarius ATCC 11741] gi|227866968|gb|EEJ74389.1| excinuclease ABC subunit C [Lactobacillus salivarius ATCC 11741] Length = 592 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 21/100 (21%) Query: 35 LSCLGKIGDFCTLFVETHMRQ----DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 L +I D F T RQ + + S L+R +QGVG + + +L Sbjct: 508 FYLLQRIQDEVHRFAITFHRQVRSKNSL-----ASRLER--------IQGVGPKTRIKLL 554 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + + + + +++ + + GIS K+A I LK Sbjct: 555 RNYGSLKNISAASVEDLESL----GISKKVAQTIKLSLKN 590 >gi|218887930|ref|YP_002437251.1| excinuclease ABC subunit C [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758884|gb|ACL09783.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 762 Score = 41.6 bits (97), Expect = 0.072, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V+GVG + A + R + + K +A++PGI + A +I Sbjct: 702 ELQRVEGVGPKTARLLWDRFGTLAAMRAASE---KELAEVPGIGPRRARQI 749 >gi|227553982|ref|ZP_03984029.1| competence protein comEA [Enterococcus faecalis HH22] gi|227176885|gb|EEI57857.1| competence protein comEA [Enterococcus faecalis HH22] gi|315170252|gb|EFU14269.1| comEA protein [Enterococcus faecalis TX1342] gi|315574318|gb|EFU86509.1| comEA protein [Enterococcus faecalis TX0309B] gi|315580207|gb|EFU92398.1| comEA protein [Enterococcus faecalis TX0309A] Length = 225 Score = 41.6 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|156937657|ref|YP_001435453.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I] gi|156566641|gb|ABU82046.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I] Length = 212 Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 14/26 (53%) Query: 96 TELVESIILQNSKVIAQIPGISMKIA 121 E+ ++I + V+ +I GI K A Sbjct: 100 EEVKKAIEKGDKGVLTRIKGIGEKTA 125 >gi|327535733|gb|AEA94567.1| competence protein comEA [Enterococcus faecalis OG1RF] Length = 114 Score = 41.6 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 61 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 106 >gi|315161634|gb|EFU05651.1| comEA protein [Enterococcus faecalis TX0645] Length = 225 Score = 41.6 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|193215119|ref|YP_001996318.1| excinuclease ABC subunit C [Chloroherpeton thalassium ATCC 35110] gi|193088596|gb|ACF13871.1| excinuclease ABC, C subunit [Chloroherpeton thalassium ATCC 35110] Length = 640 Score = 41.6 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 32/145 (22%) Query: 6 KGNIEGLYEDYVLIDVQGVCY----------IIYCPIRTLS-CLGKIGDFCTLFVETHMR 54 KG + Y ++ GV ++ P L L K L +R Sbjct: 509 KGQLSS---AYAVLQKSGVGVPVIGLAKRLEEVFFPNEQLPHNLPKTSSSLKLL--QQVR 563 Query: 55 QDQIRLFGFLSDLDRQWFML------LQSVQGVGARVAMGVLSRI-TATELVESIILQNS 107 + R F R+ L ++G+G A +L + E+ ++ ++ Sbjct: 564 DEAHR---FAITFHRELRSKRTLQTELTEIEGIGKTKAEKLLKTFGSVAEVKKA----SA 616 Query: 108 KVIAQIPGISMKIASRIMTELKGKA 132 + +A+ + K A RI +GKA Sbjct: 617 EALAEA--VGKKAAERIFAHFQGKA 639 >gi|315166355|gb|EFU10372.1| comEA protein [Enterococcus faecalis TX1341] Length = 225 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|315025364|gb|EFT37296.1| comEA protein [Enterococcus faecalis TX2137] Length = 225 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|256961257|ref|ZP_05565428.1| competence protein ComEA helix-hairpin-helix region [Enterococcus faecalis Merz96] gi|293383541|ref|ZP_06629451.1| competence protein comEA [Enterococcus faecalis R712] gi|293387346|ref|ZP_06631902.1| competence protein comEA [Enterococcus faecalis S613] gi|312906091|ref|ZP_07765103.1| comEA protein [Enterococcus faecalis DAPTO 512] gi|312909437|ref|ZP_07768292.1| comEA protein [Enterococcus faecalis DAPTO 516] gi|256951753|gb|EEU68385.1| competence protein ComEA helix-hairpin-helix region [Enterococcus faecalis Merz96] gi|291079053|gb|EFE16417.1| competence protein comEA [Enterococcus faecalis R712] gi|291083244|gb|EFE20207.1| competence protein comEA [Enterococcus faecalis S613] gi|310627737|gb|EFQ11020.1| comEA protein [Enterococcus faecalis DAPTO 512] gi|311290110|gb|EFQ68666.1| comEA protein [Enterococcus faecalis DAPTO 516] Length = 225 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|317481235|ref|ZP_07940306.1| RecD/TraA family helicase [Bacteroides sp. 4_1_36] gi|316902568|gb|EFV24451.1| RecD/TraA family helicase [Bacteroides sp. 4_1_36] Length = 748 Score = 41.6 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G + A ++++ + +I N + + ++PGI K +I Sbjct: 90 VKGIGPKFAKLIVAKFGLETID--VIESNIERLHEVPGIGKKRVEKI 134 >gi|119367854|sp|Q3AXU8|UVRC_SYNS9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 661 Score = 41.2 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R L + G+GA+ +LS + +++I L + +++ PG+ +A I Sbjct: 581 ERMKRSRLSDIPGLGAKRVRDLLSHFHS---IDAIQLASVDTLSKAPGVGPVLAQDI 634 >gi|78184688|ref|YP_377123.1| excinuclease ABC subunit C [Synechococcus sp. CC9902] gi|78168982|gb|ABB26079.1| Excinuclease ABC subunit C [Synechococcus sp. CC9902] Length = 679 Score = 41.2 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R L + G+GA+ +LS + +++I L + +++ PG+ +A I Sbjct: 599 ERMKRSRLSDIPGLGAKRVRDLLSHFHS---IDAIQLASVDTLSKAPGVGPVLAQDI 652 >gi|75911053|ref|YP_325349.1| phospholipase D/transphosphatidylase [Anabaena variabilis ATCC 29413] gi|75704778|gb|ABA24454.1| Phospholipase D/Transphosphatidylase [Anabaena variabilis ATCC 29413] Length = 528 Score = 41.2 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 S +T T++V I N + +PG+ K+A +I+T Sbjct: 461 SELTPTQVVN-INTANLAELETLPGVGKKLAQKIIT 495 >gi|332535897|ref|ZP_08411612.1| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis ANT/505] gi|332034713|gb|EGI71260.1| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis ANT/505] Length = 586 Score = 41.2 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 14/92 (15%) Query: 47 LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99 L + H+R + R F ++ LL+ + GVG++ +L + + Sbjct: 501 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEINGVGSKRRQTLLKYLGGMQGVK 557 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 + N + + ++PGIS +A +I L K Sbjct: 558 AA----NIEQLKKVPGISPDMAEKIFNHLHDK 585 >gi|312899879|ref|ZP_07759197.1| comEA protein [Enterococcus faecalis TX0470] gi|311292875|gb|EFQ71431.1| comEA protein [Enterococcus faecalis TX0470] Length = 225 Score = 41.2 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|71280471|ref|YP_269952.1| excinuclease ABC subunit C [Colwellia psychrerythraea 34H] gi|90111063|sp|Q47Z18|UVRC_COLP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71146211|gb|AAZ26684.1| excinuclease ABC, C subunit [Colwellia psychrerythraea 34H] Length = 639 Score = 41.2 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 5/58 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L+S++G+GA+ +L+ + E++++ + +A++PGIS +A +I L K Sbjct: 586 LESIEGIGAKKRQSLLTFLGGLQEVMQA----DITALAKVPGISHVLAEKIHNALHDK 639 >gi|256763141|ref|ZP_05503721.1| competence protein comEA [Enterococcus faecalis T3] gi|256684392|gb|EEU24087.1| competence protein comEA [Enterococcus faecalis T3] Length = 211 Score = 41.2 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203 >gi|225019213|ref|ZP_03708405.1| hypothetical protein CLOSTMETH_03166 [Clostridium methylpentosum DSM 5476] gi|224948017|gb|EEG29226.1| hypothetical protein CLOSTMETH_03166 [Clostridium methylpentosum DSM 5476] Length = 737 Score = 41.2 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 69 RQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 R L S ++G+G +A ++S L I Q+ + + Q+ GIS K+A ++ Sbjct: 83 RAIRKFLSSGAIKGIGPALAERIVSMFGEQTLER--IQQDPECLTQVKGISQKMAENLIC 140 Query: 127 E 127 E Sbjct: 141 E 141 >gi|116513882|ref|YP_812788.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093197|gb|ABJ58350.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 335 Score = 41.2 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 34/101 (33%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ-----NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTAMAKLAPKRDLEILTSIPGIGENTALRIISELGD 287 >gi|160871757|ref|ZP_02061889.1| excinuclease ABC, C subunit [Rickettsiella grylli] gi|159120556|gb|EDP45894.1| excinuclease ABC, C subunit [Rickettsiella grylli] Length = 608 Score = 41.2 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L+ + G+GA+ +L + L + ++ +A++PGIS ++A +I LK Sbjct: 556 LEDIPGIGAKRRRELLRQFGGLHALKNA-SAED---LAKVPGISKRLAEQIYFALK 607 >gi|315164894|gb|EFU08911.1| comEA protein [Enterococcus faecalis TX1302] Length = 225 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|302765759|ref|XP_002966300.1| hypothetical protein SELMODRAFT_86216 [Selaginella moellendorffii] gi|300165720|gb|EFJ32327.1| hypothetical protein SELMODRAFT_86216 [Selaginella moellendorffii] Length = 779 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 D ++ +H S + NA+ ALV LG+ D A A+ + D ++ I Sbjct: 636 DDPDIDVPYSHSSSNANVDENAVQALVALGFSADLARKALRA---TGGRTEDAAEWI 689 >gi|313203551|ref|YP_004042208.1| DNA replication and repair protein recr [Paludibacter propionicigenes WB4] gi|312442867|gb|ADQ79223.1| DNA replication and repair protein RecR [Paludibacter propionicigenes WB4] Length = 207 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 93 ITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 ++ + S++ A++PGI K A R++ L Sbjct: 1 MSLQQFSSSLLENAVNEFAKLPGIGRKTALRLVLHL 36 >gi|148653584|ref|YP_001280677.1| radical SAM domain-containing protein [Psychrobacter sp. PRwf-1] gi|148572668|gb|ABQ94727.1| Radical SAM domain protein [Psychrobacter sp. PRwf-1] Length = 422 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 12/107 (11%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL--D-RQWFMLLQSV 78 V Y Y P+ + S L IG L E + +R +GF + + + F+ L Sbjct: 256 VYYSGYVPMLSDSRLPAIGTPVPLVRENRLYQADWLMRFYGFAAHEIVEPQSPFLDL--- 312 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++A + R +I +VI ++PGI +K A +I+ Sbjct: 313 -DCDPKLAWAIRHR---EHFPVNIQTAPYEVILRVPGIGVKTAKKII 355 >gi|229549378|ref|ZP_04438103.1| competence protein comEA [Enterococcus faecalis ATCC 29200] gi|307270791|ref|ZP_07552081.1| comEA protein [Enterococcus faecalis TX4248] gi|307287671|ref|ZP_07567714.1| comEA protein [Enterococcus faecalis TX0109] gi|312953530|ref|ZP_07772368.1| comEA protein [Enterococcus faecalis TX0102] gi|229305615|gb|EEN71611.1| competence protein comEA [Enterococcus faecalis ATCC 29200] gi|306501409|gb|EFM70712.1| comEA protein [Enterococcus faecalis TX0109] gi|306512905|gb|EFM81547.1| comEA protein [Enterococcus faecalis TX4248] gi|310628542|gb|EFQ11825.1| comEA protein [Enterococcus faecalis TX0102] gi|315152020|gb|EFT96036.1| comEA protein [Enterococcus faecalis TX0031] gi|315159041|gb|EFU03058.1| comEA protein [Enterococcus faecalis TX0312] gi|329572336|gb|EGG53993.1| comEA protein [Enterococcus faecalis TX1467] Length = 225 Score = 41.2 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|29376943|ref|NP_816097.1| competence protein comEA [Enterococcus faecalis V583] gi|29344408|gb|AAO82167.1| competence protein comEA [Enterococcus faecalis V583] Length = 214 Score = 41.2 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 206 >gi|193213418|ref|YP_001999371.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327] gi|193086895|gb|ACF12171.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327] Length = 387 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 ++L + G+G A +++ + +++ +++ + QIPGI +A + Sbjct: 15 LMLSKLPGIGPARARTMIATFGSG---STLLEADAEALIQIPGIGKTLARQ 62 >gi|116514191|ref|YP_813097.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093506|gb|ABJ58659.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 158 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 93 ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + E+ + ++ +++ IPGI A RI++EL Sbjct: 4 CSLQEMAKLAPKRDLEILTSIPGIGKNTALRIISELGD 41 >gi|116070556|ref|ZP_01467825.1| excinuclease ABC subunit C [Synechococcus sp. BL107] gi|116065961|gb|EAU71718.1| excinuclease ABC subunit C [Synechococcus sp. BL107] Length = 661 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R L + G+GA+ +LS + +++I L + +A+ PG+ +A I Sbjct: 581 ERMKRSRLSDIPGLGAKRVRDLLSHFHS---IDAIQLASVDTLAKAPGVGPVLAQDI 634 >gi|81300178|ref|YP_400386.1| recombination protein RecR [Synechococcus elongatus PCC 7942] gi|81169059|gb|ABB57399.1| DNA replication and repair protein RecR [Synechococcus elongatus PCC 7942] Length = 211 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 6/41 (14%) Query: 88 GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 ++S T L I + ++PG+ K A R+ L Sbjct: 11 AIVSVYTRP-LARLIEH-----LQKLPGVGPKTAQRLALHL 45 >gi|304313782|ref|YP_003848929.1| helicase [Methanothermobacter marburgensis str. Marburg] gi|302587241|gb|ADL57616.1| predicted helicase [Methanothermobacter marburgensis str. Marburg] Length = 736 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 L+ ++Q F+ ++S+ +G++ A +L + VE+++ + K + ++ GI +IAS Sbjct: 664 LTLQEKQLFI-VESLPYIGSKYARRLLESFGS---VEAVMNASEKELMEVEGIGKRIASE 719 Query: 124 I 124 I Sbjct: 720 I 720 >gi|315032943|gb|EFT44875.1| comEA protein [Enterococcus faecalis TX0017] Length = 225 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|257079680|ref|ZP_05574041.1| competence protein ComEA helix-hairpin-helix region [Enterococcus faecalis JH1] gi|256987710|gb|EEU75012.1| competence protein ComEA helix-hairpin-helix region [Enterococcus faecalis JH1] Length = 225 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|227519833|ref|ZP_03949882.1| competence protein comEA [Enterococcus faecalis TX0104] gi|227072723|gb|EEI10686.1| competence protein comEA [Enterococcus faecalis TX0104] Length = 225 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|119471718|ref|ZP_01614078.1| excinuclease ABC subunit C [Alteromonadales bacterium TW-7] gi|119445341|gb|EAW26629.1| excinuclease ABC subunit C [Alteromonadales bacterium TW-7] Length = 607 Score = 41.2 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 14/92 (15%) Query: 47 LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99 L + H+R + R F ++ LL+ + GVG++ +L + + Sbjct: 522 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEINGVGSKRRQTLLKYLGGMQGVK 578 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 + N + + ++PGIS +A +I L K Sbjct: 579 AA----NIEQLKKVPGISPDMAEKIFNHLHDK 606 >gi|315174006|gb|EFU18023.1| comEA protein [Enterococcus faecalis TX1346] Length = 182 Score = 41.2 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 129 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 174 >gi|312905173|ref|ZP_07764294.1| comEA protein [Enterococcus faecalis TX0635] gi|310631563|gb|EFQ14846.1| comEA protein [Enterococcus faecalis TX0635] gi|315579111|gb|EFU91302.1| comEA protein [Enterococcus faecalis TX0630] Length = 225 Score = 41.2 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|257081973|ref|ZP_05576334.1| competence protein comEA [Enterococcus faecalis E1Sol] gi|256990003|gb|EEU77305.1| competence protein comEA [Enterococcus faecalis E1Sol] Length = 211 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203 >gi|255972084|ref|ZP_05422670.1| predicted protein [Enterococcus faecalis T1] gi|255963102|gb|EET95578.1| predicted protein [Enterococcus faecalis T1] Length = 220 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 167 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 212 >gi|93005656|ref|YP_580093.1| radical SAM family protein [Psychrobacter cryohalolentis K5] gi|92393334|gb|ABE74609.1| Radical SAM [Psychrobacter cryohalolentis K5] Length = 422 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 12/107 (11%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL--DRQW-FMLLQSV 78 V Y Y P+ + S L IG + E + +R +GF + + F+ L Sbjct: 256 VYYSGYVPMLSDSRLPAIGTPVPMIRENRLYQADWLMRFYGFGAHEIVEPDSPFLDL--- 312 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++A + R +I + ++I +IPGI K A +I+ Sbjct: 313 -DCDPKLAWAIRHR---DHFPVNIQTASYEMIVRIPGIGTKTAKKIV 355 >gi|329895078|ref|ZP_08270823.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC3088] gi|328922523|gb|EGG29861.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC3088] Length = 606 Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 25/138 (18%) Query: 7 GNIEGLY-EDYVLIDVQGV--------CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 G +E L ED V+I GV + T D L + ++R + Sbjct: 475 GVLEALQIEDIVVI---GVAKGTTRKAGFETLINGATGKEWQLQSDDPALHLIQYIRDES 531 Query: 58 IRLFGFL-----SDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIA 111 R F + +Q L+S+ GVGA+ +L +A + + N + + Sbjct: 532 HR---FAITGHRARRAKQHQSALESIPGVGAKRRRDLLRHFGSAQGVKGA----NIEELI 584 Query: 112 QIPGISMKIASRIMTELK 129 ++PGI+ +A +I+ L+ Sbjct: 585 KVPGINRALAEQIVEHLQ 602 >gi|307285768|ref|ZP_07565902.1| comEA protein [Enterococcus faecalis TX0860] gi|306502529|gb|EFM71796.1| comEA protein [Enterococcus faecalis TX0860] Length = 225 Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|146307397|ref|YP_001187862.1| excinuclease ABC subunit C [Pseudomonas mendocina ymp] gi|189038075|sp|A4XUW4|UVRC_PSEMY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|145575598|gb|ABP85130.1| Excinuclease ABC subunit C [Pseudomonas mendocina ymp] Length = 607 Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V G+G + +L+ EL + + IA+ PGIS K+A I Sbjct: 553 TLEEVAGIGPKRRRELLNHFGGLQELSRASAEE----IAKAPGISKKLAELI 600 >gi|257087479|ref|ZP_05581840.1| competence protein comEA [Enterococcus faecalis D6] gi|256995509|gb|EEU82811.1| competence protein comEA [Enterococcus faecalis D6] Length = 211 Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203 >gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1] gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1] Length = 750 Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 +G + A +L+ + +++II + + Q+PGI K A ++ EL Sbjct: 701 LGPKYARALLTAFGS---LKAIIDAEKEELLQVPGIGAKKAE-MIYEL 744 >gi|327480699|gb|AEA84009.1| excinuclease ABC subunit C [Pseudomonas stutzeri DSM 4166] Length = 607 Score = 41.2 bits (96), Expect = 0.100, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V G+G + +L+ EL + + + IA+ PGIS K+A I Sbjct: 553 TLEDVPGIGPKRRRELLTHFGGLQELCRASLDE----IAKAPGISKKLAESI 600 >gi|297545157|ref|YP_003677459.1| excinuclease ABC subunit C [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842932|gb|ADH61448.1| excinuclease ABC, C subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 615 Score = 41.2 bits (96), Expect = 0.100, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 17/99 (17%) Query: 27 IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 I P+ T + +I + F T ++ +++ L ++ G+G + Sbjct: 523 EIDIPMTTKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572 Query: 85 VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 A + + E+ + +++ + ++ G++ K A Sbjct: 573 RAKALYDAFNSIEEIKRA-SVED---LKKVKGMNEKAAQ 607 >gi|330503310|ref|YP_004380179.1| excinuclease ABC subunit C [Pseudomonas mendocina NK-01] gi|328917596|gb|AEB58427.1| excinuclease ABC subunit C [Pseudomonas mendocina NK-01] Length = 607 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V G+G + +L+ EL + + IA+ PGIS K+A I Sbjct: 553 TLEEVAGIGPKRRRELLNHFGGLQELSRASAEE----IAKAPGISKKLAELI 600 >gi|294780838|ref|ZP_06746193.1| comEA protein [Enterococcus faecalis PC1.1] gi|294452083|gb|EFG20530.1| comEA protein [Enterococcus faecalis PC1.1] Length = 214 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 206 >gi|269127991|ref|YP_003301361.1| Helix-hairpin-helix DNA-binding class 1 [Thermomonospora curvata DSM 43183] gi|268312949|gb|ACY99323.1| Helix-hairpin-helix DNA-binding class 1 [Thermomonospora curvata DSM 43183] Length = 147 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI 120 L +V G+G + A+ + L + L E+I + + G K Sbjct: 89 RNLLAVPGLGPKRALQLHTELGVDSPQALAEAIRQG---RLDGVRGFGPKT 136 >gi|315030172|gb|EFT42104.1| comEA protein [Enterococcus faecalis TX4000] Length = 225 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|262373562|ref|ZP_06066840.1| DNA-binding protein [Acinetobacter junii SH205] gi|262311315|gb|EEY92401.1| DNA-binding protein [Acinetobacter junii SH205] Length = 420 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 13/103 (12%) Query: 29 YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82 Y PI T + L +G L E + +R +GF + ++ + L + Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPHLDL----DID 312 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +++ + + + + ++I ++PGI +K A +I+ Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYRMILRVPGIGVKSAKKIV 352 >gi|225175287|ref|ZP_03729282.1| helicase, RecD/TraA family [Dethiobacter alkaliphilus AHT 1] gi|225169039|gb|EEG77838.1| helicase, RecD/TraA family [Dethiobacter alkaliphilus AHT 1] Length = 724 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R L GVG A ++ L II + + ++ GI +K A+ I Sbjct: 81 ERFLASGLIK--GVGPSTAEKIVEHFGVDALE--IIENDPGRLCEVEGIGVKKAATI 133 >gi|257084525|ref|ZP_05578886.1| competence protein CelA [Enterococcus faecalis Fly1] gi|256992555|gb|EEU79857.1| competence protein CelA [Enterococcus faecalis Fly1] Length = 225 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|162139923|ref|YP_340422.2| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis TAC125] gi|119367818|sp|Q3IIM0|UVRC_PSEHT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 607 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 14/92 (15%) Query: 47 LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99 L + H+R + R F ++ LL+ + GVGA+ +L + + Sbjct: 522 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEINGVGAKRRQTLLKYLGGMQGVK 578 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 + N + + ++PGIS +A +I L K Sbjct: 579 AA----NIEQLKKVPGISPDMADKIFNHLHDK 606 >gi|256853809|ref|ZP_05559174.1| competence protein comEA [Enterococcus faecalis T8] gi|307290497|ref|ZP_07570410.1| comEA protein [Enterococcus faecalis TX0411] gi|256710752|gb|EEU25795.1| competence protein comEA [Enterococcus faecalis T8] gi|306498444|gb|EFM67948.1| comEA protein [Enterococcus faecalis TX0411] Length = 225 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 217 >gi|269792732|ref|YP_003317636.1| competence protein ComEA helix-hairpin-helix repeat-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100367|gb|ACZ19354.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 235 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+S+ GVG + A ++ TA + K + ++ GI K ++ Sbjct: 181 EELKSLPGVGDKTAQAIIDYRTANGPFR-----DVKDLMKVKGIGPKKLEKM 227 >gi|146282443|ref|YP_001172596.1| excinuclease ABC subunit C [Pseudomonas stutzeri A1501] gi|145570648|gb|ABP79754.1| excinuclease ABC subunit C [Pseudomonas stutzeri A1501] Length = 585 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V G+G + +L+ EL + + + IA+ PGIS K+A I Sbjct: 531 TLEDVPGIGPKRRRELLTHFGGLQELCRASLDE----IAKAPGISKKLAESI 578 >gi|32476472|ref|NP_869466.1| DNA processing chain A [Rhodopirellula baltica SH 1] gi|32447017|emb|CAD78923.1| DNA processing chain A [Rhodopirellula baltica SH 1] Length = 455 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 D R + L + G+G R ++ + +I+ + +A + G+ K+A Sbjct: 85 ADDSTRDL-VQLCLLPGLGPRTLTSLMEAFGS---ARAILNADKNSLASVHGVGPKLA 138 >gi|288917081|ref|ZP_06411451.1| excinuclease ABC, C subunit [Frankia sp. EUN1f] gi|288351450|gb|EFC85657.1| excinuclease ABC, C subunit [Frankia sp. EUN1f] Length = 758 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 5/92 (5%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L V G+G +L + + ++ + + IAQ+PGI + A I+ L A Sbjct: 641 LDGVPGLGDTRRKALLRQFGSVAKVRAATAEE----IAQVPGIGPRTAEAIVAALARSAP 696 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 + ++ + E + + A+S Sbjct: 697 GEAQAPPPAVNPLTGEIIGTGTTGTETTGAMS 728 >gi|257416686|ref|ZP_05593680.1| competence protein comEA [Enterococcus faecalis AR01/DG] gi|257158514|gb|EEU88474.1| competence protein comEA [Enterococcus faecalis ARO1/DG] Length = 211 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203 >gi|226953824|ref|ZP_03824288.1| radical SAM superfamily protein [Acinetobacter sp. ATCC 27244] gi|226835415|gb|EEH67798.1| radical SAM superfamily protein [Acinetobacter sp. ATCC 27244] Length = 420 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%) Query: 29 YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82 Y PI T + L +G L E + +R +GF + ++ + L V Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPHLDL----DVD 312 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +++ + + + + ++I ++PGI +K A +I+ Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYRMILRVPGIGVKSAKKIV 352 >gi|76875758|emb|CAI86979.1| DNA repair enzyme together with UvrAB; incision nuclease subunit C; repair of UV damage to DNA [Pseudoalteromonas haloplanktis TAC125] Length = 586 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 14/92 (15%) Query: 47 LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99 L + H+R + R F ++ LL+ + GVGA+ +L + + Sbjct: 501 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEINGVGAKRRQTLLKYLGGMQGVK 557 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 + N + + ++PGIS +A +I L K Sbjct: 558 AA----NIEQLKKVPGISPDMADKIFNHLHDK 585 >gi|88800815|ref|ZP_01116371.1| hypothetical protein MED297_06529 [Reinekea sp. MED297] gi|88776455|gb|EAR07674.1| hypothetical protein MED297_06529 [Reinekea sp. MED297] Length = 2587 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 7/20 (35%), Positives = 11/20 (55%) Query: 106 NSKVIAQIPGISMKIASRIM 125 + K + + GI K A RI+ Sbjct: 11 DKKSLQSVKGIGEKTAERII 30 >gi|313113909|ref|ZP_07799467.1| helicase, RecD/TraA family [Faecalibacterium cf. prausnitzii KLE1255] gi|310623748|gb|EFQ07145.1| helicase, RecD/TraA family [Faecalibacterium cf. prausnitzii KLE1255] Length = 740 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 23/143 (16%) Query: 3 GKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQDQI 58 +I+G +E ++ + Y+++ G L + R + Sbjct: 7 EQIEGTVED-----IIYENTDNGYMVFEVSGGGVVTVVCGIVGELHAGESVVCRGRYENH 61 Query: 59 RLFG--FLSDL-DRQW---------FMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106 +G F + + F+ +S+ +GA+ A ++ A L +I + Sbjct: 62 ATYGRQFHAQECETDMPKDLEAVYAFLASRSLPYIGAKTADKIIDLFGAEALE--VIAND 119 Query: 107 SKVIAQIPGISMKIASRIMTELK 129 + Q+PGIS A RI E K Sbjct: 120 PARLTQVPGISADKADRIQQEFK 142 >gi|308177476|ref|YP_003916882.1| DNA uptake protein [Arthrobacter arilaitensis Re117] gi|307744939|emb|CBT75911.1| putative DNA uptake protein [Arthrobacter arilaitensis Re117] Length = 215 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDM 143 I +S+ + ++PGI +A RI+ + + K +SV + D Sbjct: 157 INNADSQTLQELPGIGPALAERII-DFRSKNGPFTSVEELDA 197 >gi|262376249|ref|ZP_06069479.1| DNA-binding protein [Acinetobacter lwoffii SH145] gi|262308850|gb|EEY89983.1| DNA-binding protein [Acinetobacter lwoffii SH145] Length = 419 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 25/109 (22%) Query: 29 YCPIRTLS-CLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---------DRQWFMLLQ 76 Y PI L IG L E + +R +GF +D + + Sbjct: 256 YIPINPEEKALPAIGSAPPLLRENRLYQSDWLMRFYGFAADEIVDEQHPNLELE------ 309 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + +++ + I + K+I ++PGI ++ A +I+ Sbjct: 310 ----IDPKLSWALRH---PEAFPVDINRADYKMILRVPGIGVRSAQKIV 351 >gi|257090638|ref|ZP_05584999.1| competence protein comEA [Enterococcus faecalis CH188] gi|256999450|gb|EEU85970.1| competence protein comEA [Enterococcus faecalis CH188] Length = 211 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203 >gi|149195333|ref|ZP_01872420.1| DNA polymerase X family/PHP domain protein [Caminibacter mediatlanticus TB-2] gi|149134525|gb|EDM23014.1| DNA polymerase X family/PHP domain protein [Caminibacter mediatlanticus TB-2] Length = 567 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 21/105 (20%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQGVGARVAMG 88 L+ L IG +LF++ + + F + Q +L S++G+G + Sbjct: 55 LTRLPGIGKDLSLFIKEIVETGK-----FHKLEELQKEIPPGLVDML-SIEGLGPKRIRQ 108 Query: 89 VLSRITA---TELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + EL + + ++PG K+ +I LKG Sbjct: 109 IYDAFKVTSLDELKKYAESGE---LDKLPGFGPKLIEKI---LKG 147 >gi|255975151|ref|ZP_05425737.1| competence protein comEA [Enterococcus faecalis T2] gi|255968023|gb|EET98645.1| competence protein comEA [Enterococcus faecalis T2] Length = 211 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVERL 203 >gi|327398818|ref|YP_004339687.1| exodeoxyribonuclease V subunit alpha [Hippea maritima DSM 10411] gi|327181447|gb|AEA33628.1| exodeoxyribonuclease V, alpha subunit [Hippea maritima DSM 10411] Length = 628 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 71 WFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS-MKIASRIMTE 127 F L V+G+G ++A +++ +L I+ + + GI K+A + E Sbjct: 150 LFFFLTKIVKGIGEKLARELINHYGEQQL-TYILDNEPDTLTEFKGIKEKKLAK--ILE 205 >gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928] Length = 579 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + GVG + A+ + L + EL ++ ++ + +PG+ K I Sbjct: 92 REVTQIPGVGPKTAVLLYRKLGIKSVDELRKAA---DAGKLKGLPGLGEKTVENI 143 >gi|312373598|gb|EFR21309.1| hypothetical protein AND_17225 [Anopheles darlingi] Length = 1682 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL K S ++ + + +A + A++AL L Y ++ A A Sbjct: 1366 ADRLAEELTSKIDGNSKLLNNVVENIQLAEALLSRAEIQKEEAVTALKQLQYAKELAEKA 1425 Query: 181 VVS 183 V Sbjct: 1426 VAE 1428 >gi|327539302|gb|EGF25923.1| DNA recombination-mediator protein A [Rhodopirellula baltica WH47] Length = 424 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 D R + L + G+G R ++ + +I+ + +A + G+ K+A Sbjct: 54 ADDSTRDL-VQLCLLPGLGPRTLTSLMEAFGS---ARAILNADKNSLASVHGVGPKLA 107 >gi|329117180|ref|ZP_08245897.1| helicase, RecD/TraA family [Streptococcus parauberis NCFD 2020] gi|326907585|gb|EGE54499.1| helicase, RecD/TraA family [Streptococcus parauberis NCFD 2020] Length = 800 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 17/102 (16%) Query: 113 IPGISMKIASRIMTELK-----GKAISLSSVVQQ--DMSCVNKEQ-AHICSMPSFAINAI 164 GI K A RI+ L K + S ++ S N+E + I Sbjct: 95 FKGIGKKTAERIV-SLYGDNTIDKILDDPSKLEDINGFSKANREAFVAKLRINYGTEQII 153 Query: 165 SALVNLGYGQDQA--------TTAVVSVLKKEKNIADDSQII 198 +ALV LG A AV V + +D Q I Sbjct: 154 AALVELGLSNRMAFQIYDQYKEEAVERVRTNPYQLVEDIQGI 195 >gi|56750195|ref|YP_170896.1| recombination protein RecR [Synechococcus elongatus PCC 6301] gi|73621523|sp|Q5N5P2|RECR_SYNP6 RecName: Full=Recombination protein recR gi|172046613|sp|Q31NH0|RECR_SYNE7 RecName: Full=Recombination protein recR gi|56685154|dbj|BAD78376.1| recombination protein RecR [Synechococcus elongatus PCC 6301] Length = 199 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 6/22 (27%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + + ++PG+ K A R+ L Sbjct: 12 IEHLQKLPGVGPKTAQRLALHL 33 >gi|104773874|ref|YP_618854.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422955|emb|CAI97625.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSSHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|189499391|ref|YP_001958861.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1] gi|189494832|gb|ACE03380.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1] Length = 382 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 ++L V G+G + + + +I + + +A IPGI K+A R +T+ Sbjct: 17 LVLSRVPGLGPARIRALKRQFGTS---NAIFHADERALAVIPGIGRKLA-RTITD 67 >gi|160934042|ref|ZP_02081429.1| hypothetical protein CLOLEP_02904 [Clostridium leptum DSM 753] gi|156866715|gb|EDO60087.1| hypothetical protein CLOLEP_02904 [Clostridium leptum DSM 753] Length = 453 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 20/112 (17%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGF-----LSDLDRQWFMLLQ 76 V Y Y P+ + L IG L E + Q L +GF L + + + L Sbjct: 264 VFYSAYLPVNESALLPPIGTKPPLLREHRLYQADWLLRFYGFKAKELLDEQHQSFHPYLD 323 Query: 77 SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + A+ L + + + + ++PGI +K A +I+T Sbjct: 324 ------PKCNWALNHLDLFPVE-----VNKASYETLLRVPGIGVKGAKKIIT 364 >gi|188579294|ref|YP_001922739.1| helicase, RecD/TraA family [Methylobacterium populi BJ001] gi|179342792|gb|ACB78204.1| helicase, RecD/TraA family [Methylobacterium populi BJ001] Length = 727 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 G+G +A +++ E V II + ++ GI K A+RI+ Sbjct: 101 GIGPMMAKRIVAAFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 144 >gi|326792133|ref|YP_004309954.1| elongator protein 3/MiaB/NifB [Clostridium lentocellum DSM 5427] gi|326542897|gb|ADZ84756.1| elongator protein 3/MiaB/NifB [Clostridium lentocellum DSM 5427] Length = 458 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 17/109 (15%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIRLFGFLSDLDRQ----WFMLLQSV 78 V Y Y P+ L ++ TL + D +RL+GF + F Sbjct: 250 VYYSAYTPVNKGKNLPELTQPPTLREHRLYQGDWLLRLYGFKATELLDEAHPQFDTHLD- 308 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + I +++ ++PGI ++ A +IM Sbjct: 309 ----PKTSWALNHLEQFPVE-----INSAPYQMLLRVPGIGIRGAQKIM 348 >gi|104774519|ref|YP_619499.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423600|emb|CAI98533.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LEAKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKENSAHVRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|104774575|ref|YP_619555.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|104774764|ref|YP_619744.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423656|emb|CAI98617.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423845|emb|CAI98877.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LEAKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|11499053|ref|NP_070287.1| Hef nuclease [Archaeoglobus fulgidus DSM 4304] gi|2649107|gb|AAB89786.1| ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus DSM 4304] Length = 741 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Query: 66 DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++++ ++ ++ VG +A +L + +E+I + + +A++P + KIA RI Sbjct: 669 KDEQEY--IVSAISNVGNVIARNLLDYF---QTIENIATADEEELAKVPKVGKKIAKRI 722 >gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec] gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec] Length = 703 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 25/181 (13%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD------------ 66 +D+ G+ Y L G+I D +F + L GF Sbjct: 467 LDIDGLGYE---TATVLLAEGRIHDIGDVF--HLAPESFEGLRGFADKKIEQILRGLEAA 521 Query: 67 LDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 DR + LL S++ VG A G+ + + + +I ++ +A + G+ KIA + Sbjct: 522 RDRPLWRLLVGLSIRHVGPTAARGLARELRSLD---AIATAPAERLAAVDGVGPKIADAV 578 Query: 125 MTELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATTAVV 182 + + + + + + E A P + + L G+ +D AT AV Sbjct: 579 VDWFADPRHRDIVARIASGGVRLADEGAGEGPGPLDGVVVVIT-GTLDGWSRDTATEAVQ 637 Query: 183 S 183 S Sbjct: 638 S 638 >gi|259046679|ref|ZP_05737080.1| exodeoxyribonuclease V alpha chain [Granulicatella adiacens ATCC 49175] gi|259036844|gb|EEW38099.1| exodeoxyribonuclease V alpha chain [Granulicatella adiacens ATCC 49175] Length = 800 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 13/96 (13%) Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA------ 166 PGI K A +I+ +L A+ + D + ++ I+ Sbjct: 98 FPGIGEKTAEKIVEKLGEDALE---RILNDGNALDGITGLTKKKKEMIREVITQNQGTEK 154 Query: 167 ----LVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 L NLG+ A + K K I D+ + Sbjct: 155 LMFELTNLGFTPSIAQKIIGMFKDKAKQILDEDPYL 190 >gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6] gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6] Length = 746 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 69 RQWFMLLQS-VQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 ++ + S + +G +A +L T + + + + ++P I K A +I Sbjct: 677 KEMQEYVVSAISDIGPVIARNLLEHFQTIERIATASEEE----LMKVPKIGKKTAEKI 730 >gi|325294733|ref|YP_004281247.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065181|gb|ADY73188.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 574 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 75 LQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKIASRI 124 L + GVG + + + + +L +I + ++PG +K +I Sbjct: 93 LLDIPGVGPKTVKLLYETLGIRSVEDLKRAIEKGE---LLKLPGFGLKKVEKI 142 >gi|323467391|gb|ADX71078.1| Transposase, IS116/IS110/IS902 family [Lactobacillus helveticus H10] Length = 315 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 38/99 (38%) Query: 70 QWFMLLQSVQGVGARVAMGV----------------LSRITATELVESIIL--------- 104 Q L ++G+GA A V IT + I Sbjct: 104 QIASQLVKIKGIGASKANQVACSLQSLAQRTWYYDDCDSITVELIKYCIEHLLQIEQRRK 163 Query: 105 -------------QNSKVIAQIPGISMKIASRIMTELKG 130 ++ ++ +PGI K A RI EL Sbjct: 164 HILAYIKQIAPNPKDVQIYLSVPGIGKKTALRIYAELGD 202 >gi|323466829|gb|ADX70516.1| Transposase, IS116/IS110/IS902 family [Lactobacillus helveticus H10] Length = 404 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 38/99 (38%) Query: 70 QWFMLLQSVQGVGARVAMGV----------------LSRITATELVESIIL--------- 104 Q L ++G+GA A V IT + I Sbjct: 193 QIASQLVKIKGIGASKANQVACSLQSLAQRTWYYDDCDSITVELIKYCIEHLLQIEQRRK 252 Query: 105 -------------QNSKVIAQIPGISMKIASRIMTELKG 130 ++ ++ +PGI K A RI EL Sbjct: 253 HILAYIKQIAPNPKDVQIYLSVPGIGKKTALRIYAELGD 291 >gi|323465869|gb|ADX69556.1| Transposase, IS116/IS110/IS902 family [Lactobacillus helveticus H10] Length = 255 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 38/99 (38%) Query: 70 QWFMLLQSVQGVGARVAMGV----------------LSRITATELVESIIL--------- 104 Q L ++G+GA A V IT + I Sbjct: 44 QIASQLVKIKGIGASKANQVACSLQSLAQRTWYYDDCDSITVELIKYCIEHLLQIEQRRK 103 Query: 105 -------------QNSKVIAQIPGISMKIASRIMTELKG 130 ++ ++ +PGI K A RI EL Sbjct: 104 HILAYIKQIAPNPKDVQIYLSVPGIGKKTALRIYAELGD 142 >gi|90578923|ref|ZP_01234733.1| excinuclease ABC subunit C [Vibrio angustum S14] gi|90439756|gb|EAS64937.1| excinuclease ABC subunit C [Vibrio angustum S14] Length = 589 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125 L+ V+G+G + +L + EL ++ + IA++PGIS +A +I+ Sbjct: 536 LEDVEGIGPKRRQALLKYMGGMQELKKASKEE----IAKVPGISPALAEKIV 583 >gi|304313820|ref|YP_003848967.1| DNA-binding protein [Methanothermobacter marburgensis str. Marburg] gi|302587279|gb|ADL57654.1| predicted DNA-binding protein [Methanothermobacter marburgensis str. Marburg] Length = 368 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 19/78 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG------VGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +GF D G V + A + I +L + + I ++P Sbjct: 267 YGFGVDE--------LRFSGGYLDTSVDPKYAAAMEMDIFPVDLKTAPYHE----IIRVP 314 Query: 115 GISMKIASRIMTELKGKA 132 GI + A +I+ EL+GK Sbjct: 315 GIGPRSARKII-ELRGKV 331 >gi|290969084|ref|ZP_06560617.1| helicase, RecD/TraA family [Megasphaera genomosp. type_1 str. 28L] gi|290780881|gb|EFD93476.1| helicase, RecD/TraA family [Megasphaera genomosp. type_1 str. 28L] Length = 721 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Query: 73 MLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS-MKIAS 122 L S V G+G +A ++ + I+ + + QI GI K+A Sbjct: 86 RFLSSGEVTGIGPELAKRMVDAFDLQTMD--IVQNDPDKLLQIQGIGIKKVAQ 136 >gi|116514670|ref|YP_813576.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093985|gb|ABJ59138.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125568|gb|ADY84898.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 407 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|15146027|gb|AAK83659.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 386 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 166 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 225 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 226 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 269 >gi|148265405|ref|YP_001232111.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146398905|gb|ABQ27538.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 428 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 24/158 (15%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR--QWFMLLQSVQG 80 V Y + P+ + + L + L + +R +GF S + + L Q Sbjct: 253 VYYSAFIPVASDNRLPALAGPPLLREHRLYQADWLLRFYGF-SAHELLDECRPNLD--QR 309 Query: 81 VGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM----------TEL 128 + AM L + + +V+ ++PGI ++ A RI+ EL Sbjct: 310 FDPKTCWAMRHLHLFPVE-----VNRADYEVLLRVPGIGVRSAQRIVQARRHTRLGEAEL 364 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 K + + + ++ + A + + A Sbjct: 365 K-RLGVVLKRARWFLTAGGRSLAGKTLDEARLAEVLLA 401 >gi|116514655|ref|YP_813561.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093970|gb|ABJ59123.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 407 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|325125878|gb|ADY85208.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 407 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|320352580|ref|YP_004193919.1| Excinuclease ABC subunit C [Desulfobulbus propionicus DSM 2032] gi|320121082|gb|ADW16628.1| Excinuclease ABC subunit C [Desulfobulbus propionicus DSM 2032] Length = 620 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 11/103 (10%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG--FLSDLDR---QWFMLLQSVQGV 81 ++ P R L L++ +R + R FG F L R Q L ++ G+ Sbjct: 512 KLFRPGRKNPVLLPAHSPVLLYL-MRIRDEAHR-FGITFHRRL-RGKAQLRSQLDAIDGI 568 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 G + +L + + V I + +A++PGI ++A +I Sbjct: 569 GPKRKQMLLHTLGS---VRRIAEAGIEELAEVPGIGPELAKQI 608 >gi|116514784|ref|YP_813690.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116094099|gb|ABJ59252.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 407 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|22299747|ref|NP_682994.1| recombination protein RecR [Thermosynechococcus elongatus BP-1] gi|34222856|sp|Q8DGV8|RECR_THEEB RecName: Full=Recombination protein recR gi|22295931|dbj|BAC09756.1| recombination protein [Thermosynechococcus elongatus BP-1] Length = 202 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + + ++PGI K A R+ L Sbjct: 13 IEQLQRLPGIGPKTAQRLALHL 34 >gi|313123020|ref|YP_004033279.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279583|gb|ADQ60302.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 424 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 204 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 263 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E +S + + + +++ IPGI A RI++EL Sbjct: 264 AEEECQSALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 307 >gi|254558662|ref|YP_003065757.1| Helicase [Methylobacterium extorquens DM4] gi|254265940|emb|CAX21689.1| Helicase [Methylobacterium extorquens DM4] Length = 733 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 G+G +A +++R E V II + ++ GI K A+RI+ Sbjct: 107 GIGPMMAKRIVARFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 150 >gi|163849466|ref|YP_001637509.1| RecD/TraA family helicase [Methylobacterium extorquens PA1] gi|163661071|gb|ABY28438.1| helicase, RecD/TraA family [Methylobacterium extorquens PA1] Length = 733 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 G+G +A +++ E V II + ++ GI K A+RI+ Sbjct: 107 GIGPMMAKRIVACFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 150 >gi|325125890|gb|ADY85220.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 407 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|119478435|ref|ZP_01618420.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143] gi|119448521|gb|EAW29768.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143] Length = 625 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 16/112 (14%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL--------SDLDRQWFMLLQ 76 + + T D L + H+R + R F R+ L+ Sbjct: 519 GFEVLFRADTREEFVMPSDSAGLHLVQHIRDESHR---FAITGHKQRRDKKRRE--SPLE 573 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + GVG + +L + V++ + +A IPGIS K+A I+ L Sbjct: 574 GIPGVGPKRRRELLRHFGGWQEVKAASADD---LANIPGISDKLARDIVAAL 622 >gi|313123634|ref|YP_004033893.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280197|gb|ADQ60916.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 424 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 204 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 263 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E +S + + + +++ IPGI A RI++EL Sbjct: 264 AEEECQSALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 307 >gi|325125985|gb|ADY85315.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 407 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHVRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|238063673|ref|ZP_04608382.1| helicase [Micromonospora sp. ATCC 39149] gi|237885484|gb|EEP74312.1| helicase [Micromonospora sp. ATCC 39149] Length = 754 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK-IA 121 +R L G+G ++A +++ L II + S + ++ G+ K A Sbjct: 104 ERYLGSGLIK--GIGPKMAARIVAAFGVDTLR--IIEEESARLVEVHGLGRKRTA 154 >gi|104774318|ref|YP_619298.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423399|emb|CAI98266.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|104774617|ref|YP_619597.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423698|emb|CAI98672.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQNLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|330446241|ref|ZP_08309893.1| excinuclease ABC, C subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490432|dbj|GAA04390.1| excinuclease ABC, C subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 589 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125 L+ V+G+G + +L + EL ++ + IA++PGIS +A +I+ Sbjct: 536 LEDVEGIGPKRRQALLKYMGGMQELKKASKEE----IAKVPGISPALAEKIV 583 >gi|149197777|ref|ZP_01874826.1| recombination protein RecR [Lentisphaera araneosa HTCC2155] gi|149138998|gb|EDM27402.1| recombination protein RecR [Lentisphaera araneosa HTCC2155] Length = 200 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 5/34 (14%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + ++I IA +PGI K A ++ L Sbjct: 5 PEQFQQAIE-----TIASLPGIGKKGAEKLALAL 33 >gi|21673094|ref|NP_661159.1| DprA/SMF protein, putative DNA processing factor [Chlorobium tepidum TLS] gi|21646166|gb|AAM71501.1| DprA/SMF protein, putative DNA processing factor [Chlorobium tepidum TLS] Length = 399 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS----MKIASRI 124 +++ + G+G A +L+R AT +++ + + QIPGI + A R+ Sbjct: 31 LLLIVSQLPGIGPSRARALLNRFGAT---PALLEADYDALRQIPGIGETTARETAERL 85 >gi|46199538|ref|YP_005205.1| recombination protein recR [Thermus thermophilus HB27] gi|73621525|sp|Q72I96|RECR_THET2 RecName: Full=Recombination protein recR gi|46197164|gb|AAS81578.1| recombination protein recR [Thermus thermophilus HB27] Length = 194 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 14/22 (63%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 ++ ++++PGI K A R+ L Sbjct: 11 TRALSRLPGIGPKTAQRLALHL 32 >gi|210609710|ref|ZP_03288096.1| hypothetical protein CLONEX_00280 [Clostridium nexile DSM 1787] gi|210152796|gb|EEA83802.1| hypothetical protein CLONEX_00280 [Clostridium nexile DSM 1787] Length = 446 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 19/111 (17%) Query: 24 VCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIRL--FGFLSDL---DRQW-FMLLQ 76 V Y + + L + GD L E + Q L +GF + ++ F +L Sbjct: 256 VFYSAFIHVNEDEHLPARTGDGPPLLREHRLYQADWLLRYYGFEAKELLSEKNPNFNVL- 314 Query: 77 SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 V + A+ L + + ++ ++PGI K A RI+ Sbjct: 315 ----VDPKCNWALEHLECFPVE-----VNRADYHMLLRVPGIGYKSAGRIV 356 >gi|70730923|ref|YP_260664.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf-5] gi|92058694|sp|Q4KAR9|UVRC_PSEF5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|68345222|gb|AAY92828.1| UvrABC system, C protein [Pseudomonas fluorescens Pf-5] Length = 607 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG + +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPKRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAELI 600 >gi|55981569|ref|YP_144866.1| recombination protein RecR [Thermus thermophilus HB8] gi|73621526|sp|Q5SHY0|RECR_THET8 RecName: Full=Recombination protein recR gi|55772982|dbj|BAD71423.1| RecR protein [Thermus thermophilus HB8] Length = 194 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 14/22 (63%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 ++ ++++PGI K A R+ L Sbjct: 11 TRALSRLPGIGPKTAQRLALHL 32 >gi|300776156|ref|ZP_07086015.1| radical SAM domain protein [Chryseobacterium gleum ATCC 35910] gi|300505289|gb|EFK36428.1| radical SAM domain protein [Chryseobacterium gleum ATCC 35910] Length = 419 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 20/111 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDLDRQW-----FMLLQ 76 V Y Y P+ L + + E + +R +GF + F+ L+ Sbjct: 253 VYYSGYVPVLEDQRLPSLTTEVPMLRENRLYQSDWLMRFYGF--KAEEILDPNVPFLDLE 310 Query: 77 SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + ++ A+ L + + + I ++PGI +K A +I+ Sbjct: 311 ----MDPKLSWALRNLDQFPVN-----LQTAEYRTILRVPGIGVKTAQKII 352 >gi|315126224|ref|YP_004068227.1| excinuclease ABC subunit C [Pseudoalteromonas sp. SM9913] gi|315014738|gb|ADT68076.1| excinuclease ABC subunit C [Pseudoalteromonas sp. SM9913] Length = 607 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 14/92 (15%) Query: 47 LFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELV 99 L + H+R + R F ++ LL+ + GVG++ +L + + Sbjct: 522 LHLIQHIRDESHR---FAIAGHRNKRQKQRTQSLLEEIDGVGSKRRQTLLKYLGGMQGVK 578 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 + N + + ++PGIS +A +I L K Sbjct: 579 AA----NIEQLKKVPGISPDMAEKIFNHLHDK 606 >gi|110669544|ref|YP_659355.1| excinuclease ABC subunit C [Haloquadratum walsbyi DSM 16790] gi|119367657|sp|Q18E52|UVRC_HALWD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|109627291|emb|CAJ53781.1| excinuclease ABC chain C [Haloquadratum walsbyi DSM 16790] Length = 585 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 25/122 (20%) Query: 8 NIEGLYEDYVLIDVQGV-CYIIYCPIRTLSCLGKIGDFCTLFV---ETHMRQDQIRLFGF 63 I D +++ GV + P L L ++ D F +R D Sbjct: 480 TIALAKADELVVTPNGVHDWDADAPQ--LHLLQRVRDEAHRFAVQYHQSIRDDIHT---- 533 Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 +L V GVG + +L R + + + ++ + +PG+ + A Sbjct: 534 ----------VLSDVPGVGEQTQQALLRRFGSVENVRSA--SRD--ALCDVPGVGKQTAD 579 Query: 123 RI 124 I Sbjct: 580 TI 581 >gi|322368178|ref|ZP_08042747.1| DNA mismatch repair protein MutS domain protein [Haladaptatus paucihalophilus DX253] gi|320552194|gb|EFW93839.1| DNA mismatch repair protein MutS domain protein [Haladaptatus paucihalophilus DX253] Length = 657 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L++V GVGA+ A + A ++ + +A+ PGI Sbjct: 3 LEAVPGVGAKTADALAELDDAE---RALETGDVATLARAPGI 41 >gi|240136791|ref|YP_002961258.1| Helicase [Methylobacterium extorquens AM1] gi|240006755|gb|ACS37981.1| Helicase [Methylobacterium extorquens AM1] Length = 733 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 G+G +A +++R E V II + ++ GI K A+RI+ Sbjct: 107 GIGPMMAKRIVARFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 150 >gi|104774644|ref|YP_619624.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423725|emb|CAI98717.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDIAQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|218528092|ref|YP_002418908.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4] gi|218520395|gb|ACK80980.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4] Length = 733 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 G+G +A +++R E V II + ++ GI K A+RI+ Sbjct: 107 GIGPMMAKRIVARFG--EAVFEIIEAEPARLTEVEGIGRKRAARIV 150 >gi|104773896|ref|YP_618876.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422977|emb|CAI97657.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|320159933|ref|YP_004173157.1| uvrABC system protein C [Anaerolinea thermophila UNI-1] gi|319993786|dbj|BAJ62557.1| uvrABC system protein C [Anaerolinea thermophila UNI-1] Length = 620 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 13/104 (12%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQG 80 ++ P R+ S L L++ +R + R F R+ +L S+ G Sbjct: 519 ELFLPERSESILLPRHSQG-LYLLQRIRDEAHR---FAITAHRKQRTKQGMASVLDSIPG 574 Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +G +L + E +I + + + PGI+ ++A +I Sbjct: 575 IGPARRRWLLQHFGSLE---AIRQASLEELTAAPGITKELAQKI 615 >gi|297190382|ref|ZP_06907780.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC 25486] gi|197720406|gb|EDY64314.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC 25486] Length = 575 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 38/130 (29%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI--------- 120 L + G+G R AM + L + +L+++I + + + G + Sbjct: 92 RELIMIPGLGPRKAMVLYEELEVASVDQLLDAIHKE---RLRDLKGFGERTESNLLHGIS 148 Query: 121 ------------------ASRIMTELKG-----KAISLSSVVQQDMSCVNKEQAHICSMP 157 A +++ EL + S+ + + + + Sbjct: 149 VLQKAGEGRILVSAAMDVAEQLVAELSDIRGCVRCSYAGSLRRMKETIGDVDILVAARRS 208 Query: 158 SFAINAISAL 167 + ++A++AL Sbjct: 209 APFMDALTAL 218 >gi|254443389|ref|ZP_05056865.1| PHP domain protein [Verrucomicrobiae bacterium DG1235] gi|198257697|gb|EDY82005.1| PHP domain protein [Verrucomicrobiae bacterium DG1235] Length = 585 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 6/55 (10%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + + G+GA+ + L + L + + + G K +I+ Sbjct: 93 MLEIPGLGAKKIKAMHKELGVDSIDALKAACERGDVAGL---KGFGKKTEEKILL 144 >gi|304315583|ref|YP_003850728.1| recombination protein RecR [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777085|gb|ADL67644.1| recombination protein RecR [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 199 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 4/34 (11%) Query: 110 IAQIPGISMKIASRI---MTEL-KGKAISLSSVV 139 ++++PGI K A R+ + ++ K I+LS+ + Sbjct: 15 LSRLPGIGRKTAQRLAFYILDMPKDDVINLSNAI 48 >gi|309388782|gb|ADO76662.1| radical SAM domain protein [Halanaerobium praevalens DSM 2228] Length = 424 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 17/109 (15%) Query: 24 VCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIRLFGFLSDL----DRQWFMLLQSV 78 V Y Y P+ S L + G + +R +GF + DR+ F L Sbjct: 250 VYYSAYLPVNKSSLLPTLTGPPLKREHRLYQADWLLRFYGFKAGELLTPDRENFDLKID- 308 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + + +++ ++PGI + A++I+ Sbjct: 309 ----PKADWAINNLDQFPIE-----VNQASYQMLLRVPGIGPRSAAKIV 348 >gi|15791082|ref|NP_280906.1| hypothetical protein VNG2270G [Halobacterium sp. NRC-1] gi|169236833|ref|YP_001690033.1| DNA mismatch repair protein mutS-like protein [Halobacterium salinarum R1] gi|10581681|gb|AAG20386.1| mismatch repair protein [Halobacterium sp. NRC-1] gi|167727899|emb|CAP14687.1| DNA mismatch repair protein mutS homolog [Halobacterium salinarum R1] Length = 669 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 LQ++ GVGA+ A + S ++ + +A PG+S A+RI+ Sbjct: 3 LQAIPGVGAKTADALGSLDDPEG---ALERGDVAAVAGAPGVSEGRAARIV 50 >gi|1174921|sp|P32966|UVRC_PSEFL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|472402|gb|AAA98758.1| UVR excinuclease subunit C [Pseudomonas fluorescens] Length = 607 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG + +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEDVAGVGPKRRRDLLKHFGGLQELSRASIEE----IAKAPGISKKLAELI 600 >gi|332975385|gb|EGK12279.1| exodeoxyribonuclease V alpha subunit [Desmospora sp. 8437] Length = 753 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 15/103 (14%) Query: 107 SKVIAQ--IPGISMKIASRIMTELKGKAISLSSVVQQDM---SCVNKEQAHICSMPSFAI 161 +K ++ PG+ K A +I+ L ++ ++V + + + +A+ + Sbjct: 99 AKYLSSGLFPGVGKKTAEKIVDFLGPGVLAQAAVDPGILRRVPGITESRANTIAEGLKEH 158 Query: 162 NAIS-ALVNL---GYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 A+ ALV L G G A V + + +IIR Sbjct: 159 QALEQALVQLYQFGLGPAIALRVVQTYKEA------TLEIIRQ 195 >gi|325125914|gb|ADY85244.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 407 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|86134136|ref|ZP_01052718.1| radical SAM superfamily protein [Polaribacter sp. MED152] gi|85820999|gb|EAQ42146.1| radical SAM superfamily protein [Polaribacter sp. MED152] Length = 420 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 24/132 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL-------DRQWFML 74 V Y Y PI L IG + E + R +GF ++ Sbjct: 253 VYYSGYVPISYDDRLPSIGSKVPMLRENRLYQSDWLTRFYGFQTNEIVNQNHQQLDL--- 309 Query: 75 LQSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 + ++ A+ L + + +++A+IPG+ MK S+I+ K + Sbjct: 310 -----DIDPKLSWALRNLHEFPVD-----VNKADKRMLARIPGVGMKSVSKILMARKYRR 359 Query: 133 ISLSSVVQQDMS 144 ++ + + ++ Sbjct: 360 LNWDHLKKIGIA 371 >gi|319790038|ref|YP_004151671.1| PHP domain protein [Thermovibrio ammonificans HB-1] gi|317114540|gb|ADU97030.1| PHP domain protein [Thermovibrio ammonificans HB-1] Length = 575 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 18/99 (18%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR------QWFMLLQSVQGVGARVAMG 88 LS L IG + +R G + + ++ L + GVG + Sbjct: 53 LSQLPGIGQRLQAKILEFLRT------GKIEEFEKLKQQVPDTIFTLLDIPGVGPKTVKL 106 Query: 89 VLSRI---TATELVESIILQNSKVIAQIPGISMKIASRI 124 + + + +L +I + ++PG K +I Sbjct: 107 LYEELGIRSIEDLKRAIERGE---LLKLPGFGPKRVEKI 142 >gi|300863596|ref|ZP_07108540.1| helix-hairpin-helix repeat-containing competence protein ComEA [Oscillatoria sp. PCC 6506] gi|300338395|emb|CBN53682.1| helix-hairpin-helix repeat-containing competence protein ComEA [Oscillatoria sp. PCC 6506] Length = 498 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 L+++ GVG ++A +++ L++ + ++PG+ K+ R Sbjct: 448 ELETLPGVGPKLAQKIIAARKQQPFSS---LED---LDRVPGVGKKMLER 491 >gi|289522347|ref|ZP_06439201.1| late competence protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504183|gb|EFD25347.1| late competence protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 255 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 73 MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRI 124 +LQS+ G+G + A +LS R + + ++ GI K +I Sbjct: 200 EMLQSLPGIGPKTAQAILSYREDKGGFRS------VEELLEVKGIGPKKMEKI 246 >gi|92113642|ref|YP_573570.1| NAD-dependent DNA ligase LigB [Chromohalobacter salexigens DSM 3043] gi|123387489|sp|Q1QXD7|LIGB_CHRSD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|91796732|gb|ABE58871.1| DNA ligase (NAD+) [Chromohalobacter salexigens DSM 3043] Length = 629 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 G+G ++ L++ ++ + +PG+ K A Sbjct: 459 PGIGPATWNQLVDAGLVKGLLDW-RTLDTAALEALPGVGKKTA 500 >gi|86132520|ref|ZP_01051114.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] gi|85817081|gb|EAQ38265.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] Length = 428 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 20/111 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLDRQWFMLLQSVQ-- 79 V Y Y PI L IG + E+ + Q L +GF LL Sbjct: 253 VYYSGYIPISYDERLPSIGTEVPMMRESRLYQTDWLLRFYGF------DIRELLNKEHPN 306 Query: 80 ---GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + ++ A+ L I + +++A+IPGI M+ +I+ Sbjct: 307 LETDIDPKLSWALRNLEHFPVD-----INKADRRMLARIPGIGMQSVHKII 352 >gi|325959641|ref|YP_004291107.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium sp. AL-21] gi|325331073|gb|ADZ10135.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21] Length = 690 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 L+ SV+ +G + A V+ +L + + +I GI K A I+ Sbjct: 638 LVVSVKRLGRKRARAVVKVFG-DDLKHVT----PEKLTRIDGIGPKTAEAII 684 >gi|327482626|gb|AEA85936.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri DSM 4166] Length = 553 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE--------LKGK 131 GVGA +L +L+ + L ++ + Q+PGI A+++ L Sbjct: 429 GVGAGSWQALLEAGLLPDLLAWLEL-DAAALEQVPGIGKARANKLAASFARARQRPLAQW 487 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 +L +Q + + + + A Sbjct: 488 LKALGLPAKQLPPAADWDALAARDLAQWQAEA 519 >gi|284164964|ref|YP_003403243.1| hypothetical protein Htur_1685 [Haloterrigena turkmenica DSM 5511] gi|284014619|gb|ADB60570.1| hypothetical protein Htur_1685 [Haloterrigena turkmenica DSM 5511] Length = 554 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSK--VIAQIPGISMKIASRI 124 V+G G ++ VL ++A + + + + + GI K A R+ Sbjct: 204 VEGYGRSRSIAVL-TLSADGVER-VETHDVTDFGLEAVSGIGPKTAERL 250 >gi|166226374|sp|A4VRF3|LIGB_PSEU5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 556 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE--------LKGK 131 GVGA +L +L+ + L ++ + Q+PGI A+++ L Sbjct: 432 GVGAGSWQALLEAGLLPDLLAWLEL-DAAALEQVPGIGKARANKLAASFARARQRPLAQW 490 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 +L +Q + + + + A Sbjct: 491 LKALGLPAKQLPPAADWDALAARDLAQWQAEA 522 >gi|146284243|ref|YP_001174396.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri A1501] gi|145572448|gb|ABP81554.1| DNA ligase, NAD-dependent, putative [Pseudomonas stutzeri A1501] Length = 597 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE--------LKGK 131 GVGA +L +L+ + L ++ + Q+PGI A+++ L Sbjct: 473 GVGAGSWQALLEAGLLPDLLAWLEL-DAAALEQVPGIGKARANKLAASFARARQRPLAQW 531 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 +L +Q + + + + A Sbjct: 532 LKALGLPAKQLPPAADWDALAARDLAQWQAEA 563 >gi|104774202|ref|YP_619182.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423283|emb|CAI98121.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|15146037|gb|AAK83664.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 388 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 220 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 271 >gi|104774548|ref|YP_619528.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423629|emb|CAI98576.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|145633382|ref|ZP_01789112.1| excinuclease ABC subunit C [Haemophilus influenzae 3655] gi|144985945|gb|EDJ92547.1| excinuclease ABC subunit C [Haemophilus influenzae 3655] Length = 609 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVG + +L + + ++ + + IA +PGIS K+A RI LK Sbjct: 556 LETIEGVGTKRRQALLKYLGGLQGVKKATLDE----IASVPGISPKLAERIFETLKN 608 >gi|333030036|ref|ZP_08458097.1| Recombination protein recR [Bacteroides coprosuis DSM 18011] gi|332740633|gb|EGJ71115.1| Recombination protein recR [Bacteroides coprosuis DSM 18011] Length = 205 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%) Query: 107 SKVIAQIPGISMKIASRIMTEL--KGK 131 +++PGI K A R++ L + K Sbjct: 14 VDEFSKLPGIGKKTAMRLVLHLLRQDK 40 >gi|329120958|ref|ZP_08249589.1| exodeoxyribonuclease V alpha subunit [Dialister micraerophilus DSM 19965] gi|327471120|gb|EGF16574.1| exodeoxyribonuclease V alpha subunit [Dialister micraerophilus DSM 19965] Length = 710 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%) Query: 70 QWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + L S ++G+G VA +++ L I N ++ I GI K +I Sbjct: 81 EIYNFLSSGLIKGIGPTVARRIVNHFGKKTLE--IFNDNIDMLLTIHGIGNKTLEKI 135 >gi|225028635|ref|ZP_03717827.1| hypothetical protein EUBHAL_02914 [Eubacterium hallii DSM 3353] gi|224954021|gb|EEG35230.1| hypothetical protein EUBHAL_02914 [Eubacterium hallii DSM 3353] Length = 430 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 18/97 (18%) Query: 37 CLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVGARV--AMG 88 L IG L E + Q L +GF +D DR F + A+ Sbjct: 267 ELPAIGTAPPLLREHRLYQADWLLRYYGFQADELLSSDRPNFNTFID-----PKCDWALR 321 Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 L I + + + ++PGI K A RI+ Sbjct: 322 HLEYFPVE-----INQASYEQLLRVPGIGNKSAGRIV 353 >gi|313891927|ref|ZP_07825528.1| helicase, RecD/TraA family [Dialister microaerophilus UPII 345-E] gi|313119570|gb|EFR42761.1| helicase, RecD/TraA family [Dialister microaerophilus UPII 345-E] Length = 710 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%) Query: 70 QWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + L S ++G+G VA +++ L I N ++ I GI K +I Sbjct: 81 EIYNFLSSGLIKGIGPTVARRIVNHFGKKTLE--IFNDNIDMLLTIHGIGNKTLEKI 135 >gi|167771685|ref|ZP_02443738.1| hypothetical protein ANACOL_03057 [Anaerotruncus colihominis DSM 17241] gi|167666325|gb|EDS10455.1| hypothetical protein ANACOL_03057 [Anaerotruncus colihominis DSM 17241] Length = 433 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 18/105 (17%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGF----LSDLDRQWFMLLQSVQGVG 82 Y P+++ S L I L E + Q L +GF L D Q F L Sbjct: 252 YMPVQSDSLLPSIDTKPPLLREHRLYQADWLLRFYGFEASELLDETHQSFNPLID----- 306 Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ + + + +++ ++PGI +K A RI+ Sbjct: 307 PKCNWALNHMEQFPVE-----VNTAPYELLLRVPGIGVKSAQRIV 346 >gi|325126437|gb|ADY85767.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 407 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|160878976|ref|YP_001557944.1| radical SAM domain-containing protein [Clostridium phytofermentans ISDg] gi|160427642|gb|ABX41205.1| Radical SAM domain protein [Clostridium phytofermentans ISDg] Length = 539 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 22/121 (18%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDL----DRQWFMLLQSVQGVGARV--A 86 TL L + +R +GF + +R F + + A Sbjct: 371 STLPVLPGGPPLLREH-RLYQADWLLRYYGFEATELLTKERPNFNVFFD-----PKCNWA 424 Query: 87 MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146 +G L + + + + ++PGI K A RI+ KA +S + +D+ + Sbjct: 425 IGHLEQFPVE-----VNTADYYTLLRVPGIGPKSAGRIV-----KARQMSKLRFEDLKKI 474 Query: 147 N 147 Sbjct: 475 G 475 >gi|158522359|ref|YP_001530229.1| RecD/TraA family helicase [Desulfococcus oleovorans Hxd3] gi|158511185|gb|ABW68152.1| helicase, RecD/TraA family [Desulfococcus oleovorans Hxd3] Length = 722 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G A + + L ++ + +A++PGI K Sbjct: 91 IKGIGPVTAERITKKFGKKTLQ--VLETDISRLAKVPGIGKK 130 >gi|325277353|ref|ZP_08142978.1| excinuclease ABC subunit C [Pseudomonas sp. TJI-51] gi|324097543|gb|EGB95764.1| excinuclease ABC subunit C [Pseudomonas sp. TJI-51] Length = 607 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%) Query: 42 GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94 GD L + +R + R F R + S V GVG + +L Sbjct: 518 GDSAALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 574 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRI 124 EL + I + IA+ PGIS K+A I Sbjct: 575 LQELNRASIDE----IAKAPGISKKLAESI 600 >gi|289434764|ref|YP_003464636.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171008|emb|CBH27550.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 202 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ+V G+G A ++ L ++I + ++ GI K ++ Sbjct: 151 LQTVPGIGESKATAIIEYREKEGLFQTIED-----LQKVTGIGEKTIEKL 195 >gi|104774120|ref|YP_619100.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423201|emb|CAI98008.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 407 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 239 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|85860568|ref|YP_462770.1| DNA polymerase IV [Syntrophus aciditrophicus SB] gi|85723659|gb|ABC78602.1| DNA polymerase IV [Syntrophus aciditrophicus SB] Length = 584 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 L + G+G + A + L + EL ++I+ + ++ + A I+ Sbjct: 97 TLLEIPGIGPKTAYRLATELGISSVDELEQAILEGKVAHLFRL---GDRTAQNIL 148 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQN-----SKVIAQIPGISMKIASRIMTE 127 L+++ G+G +A + + LV L++ + +IPGI K A R+ TE Sbjct: 56 EDLKALPGIGEAIASKMAELVRTGHLVAWETLRDSLPEGLSTLLEIPGIGPKTAYRLATE 115 Query: 128 L 128 L Sbjct: 116 L 116 >gi|158313894|ref|YP_001506402.1| excinuclease ABC subunit C [Frankia sp. EAN1pec] gi|229558031|sp|A8KYR0|UVRC_FRASN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|158109299|gb|ABW11496.1| excinuclease ABC, C subunit [Frankia sp. EAN1pec] Length = 692 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 14/118 (11%) Query: 38 LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQGVGARVAMGVLS 91 L + + L++ +R + R F RQ L V G+G +L Sbjct: 574 LPRTSEA--LYLLQRVRDEAHR---FAITYHRQKRSTSMVASALDDVPGLGETRRKALLR 628 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 + V + + Q+PGI + A I+ L A + + + E Sbjct: 629 HFGSVAKVRAAGAEEIA---QVPGIGPRTAEAIVAALARSAPGTDAAPAPAVDPLTGE 683 >gi|281419971|ref|ZP_06250970.1| helicase, RecD/TraA family [Prevotella copri DSM 18205] gi|281406098|gb|EFB36778.1| helicase, RecD/TraA family [Prevotella copri DSM 18205] Length = 747 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G + A ++ R + +I + + + ++ GI K +I Sbjct: 90 VKGIGPKYAHLIVERFGTDTIE--VIEDDIERLYEVAGIGKKRVEKI 134 >gi|139437156|ref|ZP_01771316.1| Hypothetical protein COLAER_00295 [Collinsella aerofaciens ATCC 25986] gi|133776803|gb|EBA40623.1| Hypothetical protein COLAER_00295 [Collinsella aerofaciens ATCC 25986] Length = 113 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 13/64 (20%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMG--VLSRITATELVESIILQNSKVIAQIPGISMKIA 121 + +R F + A+ + +R+ E PGI A Sbjct: 24 HTRRERAAFKAACKAGNIPPETAIEAPIAARLRVEEFAR-----------SFPGIGPVTA 72 Query: 122 SRIM 125 +I+ Sbjct: 73 QKIV 76 >gi|187251076|ref|YP_001875558.1| transcription termination factor [Elusimicrobium minutum Pei191] gi|186971236|gb|ACC98221.1| Transcription termination factor [Elusimicrobium minutum Pei191] Length = 463 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Query: 74 LLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 LL SV+G+G + A ++ + ++ E + ++ + +A + GI K A++I+ Sbjct: 386 LLASVEGIGPKTAETLVKAGFSSVEKIAALE---PEHLATVQGIGEKSAAKII 435 >gi|307822050|ref|ZP_07652282.1| helix-hairpin-helix DNA-binding, class 1 [Methylobacter tundripaludum SV96] gi|307736616|gb|EFO07461.1| helix-hairpin-helix DNA-binding, class 1 [Methylobacter tundripaludum SV96] Length = 297 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 17/112 (15%) Query: 69 RQWFMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIA-QIPGISMKIASRI 124 R+ F L + G+G +A + + + L + + QIPGI + A RI Sbjct: 51 REGFSALLELPGIGEGIARSINEYVMTGRMSRLESLQSGHDPIALFEQIPGIGPRSAHRI 110 Query: 125 M----------TELK---GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 + EL G+ + + ++ V AH+ A Sbjct: 111 IETLHIDTLEALELAAHNGRLNKVPGFSTKKIALVQTWLAHVLGFRRPRFEA 162 >gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch Maree] gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch Maree] Length = 664 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 34/212 (16%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y YC TLSC ++ V R+ + + GF Q F L ++ + Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468 Query: 82 G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127 ++ L + + L+ +I + IP + K A+ ++ + Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLINAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182 K ++ ++Q + + + S+ F + I L+NLG + Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERID 588 Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207 +K I + I+ L+++ Sbjct: 589 ENPFMDKTIVVTGSLNNYSRGEIKDKLQSLGA 620 >gi|148239605|ref|YP_001224992.1| excinuclease ABC subunit C [Synechococcus sp. WH 7803] gi|147848144|emb|CAK23695.1| Nuclease subunit of the excinuclease complex (Excinuclease ABC subunit C) [Synechococcus sp. WH 7803] Length = 652 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R L + GVG + +L+ + +++I L + + +A+ PG+ + +A I Sbjct: 575 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQLASVETLAKAPGVGLALARDI 628 >gi|145592796|ref|YP_001157093.1| RecD/TraA family helicase [Salinispora tropica CNB-440] gi|145302133|gb|ABP52715.1| helicase, RecD/TraA family [Salinispora tropica CNB-440] Length = 741 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK-IA 121 V+G+G A +++ L II + + ++PG+ K A Sbjct: 101 VKGIGPVFAERIVAHFGLETLR--IIEEEPARLVEVPGLGPKRTA 143 >gi|302386224|ref|YP_003822046.1| Radical SAM domain protein [Clostridium saccharolyticum WM1] gi|302196852|gb|ADL04423.1| Radical SAM domain protein [Clostridium saccharolyticum WM1] Length = 442 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGF----LSDLDRQWFMLLQS 77 V Y + P+ S L + G L + +R +GF L DR F +L Sbjct: 256 VFYSAFVPVNKDSSLPALPGGPPLLREHRLYQADWLMRFYGFQAGELLSEDRPNFNVLLD 315 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + + ++PG+ +K RI+ Sbjct: 316 -----PKCDWALRHLEMFPVE-----VNRADYYTLLRVPGMGVKSVKRII 355 >gi|317472453|ref|ZP_07931776.1| helix-hairpin-helix domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900071|gb|EFV22062.1| helix-hairpin-helix domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 490 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 18/105 (17%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82 Y P+ S L + L E + Q L +GF ++ DR F ++ Sbjct: 303 YVPLNEDSRLPSLDTAPPLLREHRLYQADWLLRFYGFHAEELLSTDRPNFNIMLD----- 357 Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + + ++PGI K A RI+ Sbjct: 358 PKCDWALRHLELFPVE-----INRASYADLLRVPGIGTKSAYRIV 397 >gi|167747956|ref|ZP_02420083.1| hypothetical protein ANACAC_02688 [Anaerostipes caccae DSM 14662] gi|167652606|gb|EDR96735.1| hypothetical protein ANACAC_02688 [Anaerostipes caccae DSM 14662] Length = 490 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 18/105 (17%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQSVQGVG 82 Y P+ S L + L E + Q L +GF ++ DR F ++ Sbjct: 303 YVPLNEDSRLPSLDTAPPLLREHRLYQADWLLRFYGFHAEELLSTDRPNFNIMLD----- 357 Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + + ++PGI K A RI+ Sbjct: 358 PKCDWALRHLELFPVE-----INRASYADLLRVPGIGTKSAYRIV 397 >gi|294141552|ref|YP_003557530.1| recombination protein RecR [Shewanella violacea DSS12] gi|293328021|dbj|BAJ02752.1| recombination protein RecR [Shewanella violacea DSS12] Length = 199 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL+++ + +PG+ K A R+ +L + + Q + + H Sbjct: 7 VDELIQA--------LKCLPGVGPKSAQRMAFQLLERDRKAGQSLGQALEKAMSDVGHCQ 58 Query: 155 SMPSFAINA 163 S +F Sbjct: 59 SCRTFTEEV 67 >gi|307266005|ref|ZP_07547552.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306918967|gb|EFN49194.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 615 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 15/98 (15%) Query: 27 IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 I P+ T + +I + F T ++ +++ L ++ G+G + Sbjct: 523 EIDIPMTTKAFRLIAQIQEEAHRFAITFHKK----------KQSKRFKSELFNIPGIGEK 572 Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 A + + E + S L++ + ++ G++ K A Sbjct: 573 RAKALYDAFKSIEEIRSASLED---LKKVKGMNEKAAQ 607 >gi|225019471|ref|ZP_03708663.1| hypothetical protein CLOSTMETH_03424 [Clostridium methylpentosum DSM 5476] gi|224947800|gb|EEG29009.1| hypothetical protein CLOSTMETH_03424 [Clostridium methylpentosum DSM 5476] Length = 452 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGF----LSDLDRQWFMLLQS 77 V Y Y P+ L +G L E + Q L +GF L D Q F L Sbjct: 264 VFYSAYMPVSNNPLLPALGTRPPLLREHRLYQADWLLRFYGFQASELLDEQHQSFNPLID 323 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ + + ++ ++PGI ++ A RI+ Sbjct: 324 -----PKCNWAVNHMELFPVE-----VNRAPYDMLLRVPGIGVRSAQRIV 363 >gi|119356148|ref|YP_910792.1| hypothetical protein Cpha266_0306 [Chlorobium phaeobacteroides DSM 266] gi|119353497|gb|ABL64368.1| conserved hypothetical protein [Chlorobium phaeobacteroides DSM 266] Length = 418 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 25/113 (22%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR---------QWFM 73 V Y + P+ S L + L + +R +GF + + + F Sbjct: 251 VYYSAFIPVNEDSRLPVLASPPLLREHRLYQADWLLRFYGF-TAEEILSDEAPNLDETFD 309 Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A + + E+ + + V+ ++PGI + A RI+ Sbjct: 310 ---------PKTAWALRNPGFFPVEINRA----DYSVLLRVPGIGVTSARRIV 349 >gi|88808548|ref|ZP_01124058.1| excinuclease ABC subunit C [Synechococcus sp. WH 7805] gi|88787536|gb|EAR18693.1| excinuclease ABC subunit C [Synechococcus sp. WH 7805] Length = 651 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R L + GVG + +L+ + +++I L + + + + PG+ + +A I Sbjct: 575 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQLASVETLVKAPGVGLALARDI 628 >gi|329667033|gb|AEB92981.1| Transposase [Lactobacillus johnsonii DPC 6026] Length = 407 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf] gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657] gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf] gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657] Length = 664 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 27/172 (15%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQ 79 GV Y YC TLSC ++ V R+ + + GF Q F L +S+ Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSGKTAEQLFERLDIKSIS 469 Query: 80 GVGARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127 + ++ L + + L+++I + IP + K A+ ++ + Sbjct: 470 DL-YKIRKEELLTLDKFGDKKSQNLIDAIENSKNCDLASFIYALGIPNVGKKTANDLVMK 528 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQ 174 K ++ ++Q + + + S+ F + I L+NLG Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKP 580 >gi|332800255|ref|YP_004461754.1| Recombination protein recR [Tepidanaerobacter sp. Re1] gi|332697990|gb|AEE92447.1| Recombination protein recR [Tepidanaerobacter sp. Re1] Length = 198 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Query: 110 IAQIPGISMKIASRI---MTEL-KGKAISLSSVVQQDMSCVN 147 ++++PGI K A R+ + ++ K + SL+ + Q + Sbjct: 15 LSRLPGIGPKTAQRLAFYILKMSKDRVESLADAILQAKELIT 56 >gi|300709537|ref|YP_003735351.1| excinuclease ABC subunit C [Halalkalicoccus jeotgali B3] gi|299123220|gb|ADJ13559.1| excinuclease ABC subunit C [Halalkalicoccus jeotgali B3] Length = 577 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 L V G+G + +L R + E + + +++ + + GI K A R +TE Sbjct: 527 LDDVPGIGPKTRTSLLRRFGSVEGIRTASVED---LRSVEGIGEKTA-RTITE 575 >gi|325955747|ref|YP_004286357.1| transposase [Lactobacillus acidophilus 30SC] gi|325955835|ref|YP_004286445.1| transposase [Lactobacillus acidophilus 30SC] gi|325955967|ref|YP_004286577.1| transposase [Lactobacillus acidophilus 30SC] gi|325956790|ref|YP_004292202.1| transposase [Lactobacillus acidophilus 30SC] gi|325957209|ref|YP_004292621.1| transposase [Lactobacillus acidophilus 30SC] gi|325332312|gb|ADZ06220.1| transposase [Lactobacillus acidophilus 30SC] gi|325332400|gb|ADZ06308.1| transposase [Lactobacillus acidophilus 30SC] gi|325332532|gb|ADZ06440.1| transposase [Lactobacillus acidophilus 30SC] gi|325333355|gb|ADZ07263.1| transposase [Lactobacillus acidophilus 30SC] gi|325333774|gb|ADZ07682.1| transposase [Lactobacillus acidophilus 30SC] gi|329666817|gb|AEB92765.1| transposase [Lactobacillus johnsonii DPC 6026] gi|329666923|gb|AEB92871.1| putative transposase [Lactobacillus johnsonii DPC 6026] gi|329667102|gb|AEB93050.1| transposase [Lactobacillus johnsonii DPC 6026] gi|329667105|gb|AEB93053.1| hypothetical protein LJP_0725 [Lactobacillus johnsonii DPC 6026] gi|329667329|gb|AEB93277.1| hypothetical protein LJP_0951c [Lactobacillus johnsonii DPC 6026] gi|329667674|gb|AEB93622.1| hypothetical protein LJP_1300 [Lactobacillus johnsonii DPC 6026] gi|329667826|gb|AEB93774.1| transposase [Lactobacillus johnsonii DPC 6026] Length = 407 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 247 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 290 >gi|296270098|ref|YP_003652730.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833] gi|296092885|gb|ADG88837.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833] Length = 562 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 24/144 (16%) Query: 37 CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF-----MLLQSVQGVGARVAMGV-- 89 + +G+ VE +R+ F + + L + +G + A+ + Sbjct: 53 KIPHVGEAIGKKVEEFLRRGS-----FRQLDELRARIPAGVRALTRIPSLGPKRALLLYN 107 Query: 90 -LSRITATELVESIILQNSKVIAQIPGISMKIASRIM-----TELKGKAISLS---SVVQ 140 L + L E+I +A + G K ++ EL GK L + + Sbjct: 108 ELGIDSPAALAEAIKAG---RLAGVRGFGPKAEENLLRGIEQLELAGKRFHLGIAIDLAE 164 Query: 141 QDMSCVNKEQAHICSMPSFAINAI 164 + M+ + E+ + Sbjct: 165 RIMAALPAERIAYAGSVRRMKETV 188 >gi|91772435|ref|YP_565127.1| DNA repair protein RadC [Methanococcoides burtonii DSM 6242] gi|121684487|sp|Q12YU9|Y382_METBU RecName: Full=UPF0758 protein Mbur_0382 gi|91711450|gb|ABE51377.1| DNA repair protein RadC [Methanococcoides burtonii DSM 6242] Length = 229 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 25/153 (16%) Query: 62 GFLSDLDRQWFMLLQSVQGVGAR------VAMGVLSRITATELVESIILQNSKVIAQIPG 115 GFLS+ + LL + G++ ++ +LS +L ++ N + +I G Sbjct: 27 GFLSNAE-----LLSVILRTGSKDENVVSMSSRILSEYNLKQLSQA----NISQLTKIRG 77 Query: 116 ISMKIASRI--MTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGY 172 I AS+I + EL K + ++ + N + + ++AL Y Sbjct: 78 IGPAKASQIAALFELARKLEIFTDDPKRKIRSANDVYSLLYPRHRELKKEHLTAL----Y 133 Query: 173 ---GQDQATTAVVSVLKKEKNIADDSQIIRLAL 202 + V+S+ NI ++ + AL Sbjct: 134 LDTKNNIIKEEVISIGSLNANIVHPREVFKSAL 166 >gi|300908660|ref|ZP_07126123.1| transposase [Lactobacillus reuteri SD2112] gi|300894067|gb|EFK87425.1| transposase [Lactobacillus reuteri SD2112] Length = 416 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 201 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 260 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 261 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 304 >gi|289578945|ref|YP_003477572.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9] gi|289528658|gb|ADD03010.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9] Length = 615 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 17/99 (17%) Query: 27 IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 I P+ T + +I + F T ++ +++ L ++ G+G + Sbjct: 523 EIDIPMTTKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572 Query: 85 VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 A + + E+ + +++ + ++ G++ K A Sbjct: 573 RAKALYDAFNSIEEIKRA-SVED---LKKVEGMNEKAAQ 607 >gi|188586920|ref|YP_001918465.1| helicase, RecD/TraA family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351607|gb|ACB85877.1| helicase, RecD/TraA family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 726 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++G+G + A ++ L +I + + ++PGI + A++I Sbjct: 92 IKGIGPKTAESLVEHFGKEVLQ--VIENTPEKLQEVPGIGKEKAAQI 136 Score = 37.7 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 6/111 (5%) Query: 62 GFLS-DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMK 119 GF + + LQ GV A+ + R + + + +N +A+ + GI K Sbjct: 139 GFQEHKQIKDIMVFLQEF-GVSPAFALKIYRRFGDNTIQK--VSENPYSLAREVFGIGFK 195 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 A +I E+ G ++ + + + +E++ + I AL L Sbjct: 196 TADKIAREM-GVSVDSEERAKAAVVYLLEEKSQDGNTFLKREELIEALKEL 245 >gi|300814122|ref|ZP_07094405.1| recombination protein RecR [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511779|gb|EFK38996.1| recombination protein RecR [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 201 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 4/29 (13%) Query: 107 SKVIAQIPGISMKIASRI---MTELKGKA 132 + + ++PGI K A R+ + ++ K Sbjct: 12 IRNLTRLPGIGPKTAQRLAYHIIDM-DKV 39 >gi|295092039|emb|CBK78146.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif [Clostridium cf. saccharolyticum K10] Length = 517 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGF-LSD---LDRQWFMLLQS 77 V Y + P+ S L + G L + +R +GF S+ DR F +L Sbjct: 323 VFYSAFVPVNDDSALPSLPGGPPLLREHRLYQADWLMRYYGFQASELLSEDRPNFNVLLD 382 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + ++PGI +K A RI+ Sbjct: 383 -----PKCDWAVRNLGCFPVE-----INRAPYGELLRVPGIGVKSAMRIV 422 >gi|291087599|ref|ZP_06346894.2| biotin synthase related domain containing protein [Clostridium sp. M62/1] gi|291074414|gb|EFE11778.1| biotin synthase related domain containing protein [Clostridium sp. M62/1] Length = 561 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGF-LSD---LDRQWFMLLQS 77 V Y + P+ S L + G L + +R +GF S+ DR F +L Sbjct: 367 VFYSAFVPVNDDSALPSLPGGPPLLREHRLYQADWLMRYYGFQASELLSEDRPNFNVLLD 426 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + ++PGI +K A RI+ Sbjct: 427 -----PKCDWAVRNLGCFPVE-----INRAPYGELLRVPGIGVKSAMRIV 466 >gi|317052006|ref|YP_004113122.1| radical SAM domain-containing protein [Desulfurispirillum indicum S5] gi|316947090|gb|ADU66566.1| radical SAM domain-containing protein [Desulfurispirillum indicum S5] Length = 438 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 72/200 (36%), Gaps = 36/200 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL--DRQWFMLLQSVQ 79 V Y Y P+ S L + L E + Q L +GF + R L Sbjct: 250 VYYSAYVPLNQDSLLPPLTQEPPLLREHRLYQADWLLRFYGFRAAELLSRDLPNLDTRFD 309 Query: 80 GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT----------E 127 ++ A+ L + + + + ++PGI ++ A +++T + Sbjct: 310 ---PKLFWALHHLESFPLH-----VESASYEELLRVPGIGVRGARQLVTARRQCRLREED 361 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ----ATTAVVS 183 LK L V+++ + ++ + ++ L +L + Q A A Sbjct: 362 LK----KLGIVMKRARFFLCLGGRYLGNSADLTRESL--LESL-LSRKQQRTRAKFAGAP 414 Query: 184 VLKKEKNIADDSQIIRL-AL 202 L E ++ D S IRL AL Sbjct: 415 ALFDEPDLFDPSTDIRLSAL 434 >gi|189182988|ref|YP_001936773.1| exodeoxyribonuclease V alpha subunit [Orientia tsutsugamushi str. Ikeda] gi|189179759|dbj|BAG39539.1| exodeoxyribonuclease V alpha subunit [Orientia tsutsugamushi str. Ikeda] Length = 731 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++ L G+G A ++ L I Q+ + ++PGI A +I Sbjct: 96 EKYLASGLIK--GIGPIYAKKLVQTFGLDVL-TVIENQDP-ALKKVPGIGPIRAKKI 148 >gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495] gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495] Length = 662 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 71/245 (28%), Gaps = 57/245 (23%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149 +I + IP + +K A ++ E KA V QD+ + Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI-------IRLAL 202 + I+ L++LG V+ L K + + I+ L Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESLFMGKTVVVTGTLENYSRTSIKEKL 614 Query: 203 RAISC 207 ++ Sbjct: 615 ESLGA 619 >gi|159038878|ref|YP_001538131.1| excinuclease ABC subunit C [Salinispora arenicola CNS-205] gi|189038084|sp|A8LW31|UVRC_SALAI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157917713|gb|ABV99140.1| excinuclease ABC, C subunit [Salinispora arenicola CNS-205] Length = 660 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 17/112 (15%) Query: 27 IIYCPIRTL-SCLGKIGDFCTLFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQ 79 ++ P + L + + L++ +R + R F R+ L V Sbjct: 549 EVWLPDDDFPAILPRTSEG--LYLLQRVRDEAHR---FAITFHRQRRSRRMTESALDRVS 603 Query: 80 GVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 G+G +L + L + + + I ++PGI + A I+ L Sbjct: 604 GLGEVRRKALLRHFGSLKRLAAASVEE----ITEVPGIGKRTAEAILAALAD 651 >gi|288574755|ref|ZP_06393112.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570496|gb|EFC92053.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 230 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 15/30 (50%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCP 31 I ++ + D +++ V+GV Y + C Sbjct: 198 IKYLRDKLREHKMDSIVVTVRGVGYKVQCS 227 >gi|90413709|ref|ZP_01221698.1| excinuclease ABC subunit C [Photobacterium profundum 3TCK] gi|90325330|gb|EAS41824.1| excinuclease ABC subunit C [Photobacterium profundum 3TCK] Length = 589 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V+G+G + +L + EL + + IA++PGIS +A +I Sbjct: 536 LEDVEGIGPKRRQALLKFMGGLHELKRASREE----IAKVPGISKALAEKI 582 >gi|282882934|ref|ZP_06291539.1| recombination protein RecR [Peptoniphilus lacrimalis 315-B] gi|281297345|gb|EFA89836.1| recombination protein RecR [Peptoniphilus lacrimalis 315-B] Length = 201 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 4/29 (13%) Query: 107 SKVIAQIPGISMKIASRI---MTELKGKA 132 + + ++PGI K A R+ + ++ K Sbjct: 12 IRNLTRLPGIGPKTAQRLAYHIIDM-DKV 39 >gi|218779846|ref|YP_002431164.1| recombination protein RecR [Desulfatibacillum alkenivorans AK-01] gi|226738997|sp|B8FG16|RECR_DESAA RecName: Full=Recombination protein recR gi|218761230|gb|ACL03696.1| recombination protein RecR [Desulfatibacillum alkenivorans AK-01] Length = 199 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 107 SKVIAQIPGISMKIASRIMTE-LKGKAISLSSVVQQDMSC 145 K ++++PGI K A R+ L+G ++ + Sbjct: 12 IKQLSKLPGIGEKTAERLALHILRGSVKDAQALAESISEA 51 >gi|54309405|ref|YP_130425.1| excinuclease ABC subunit C [Photobacterium profundum SS9] gi|81399352|sp|Q6LQ03|UVRC_PHOPR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|46913841|emb|CAG20623.1| putative excinuclease ABC, subunit C [Photobacterium profundum SS9] Length = 616 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V+G+G + +L + EL + + IA++PGIS +A +I Sbjct: 563 LEDVEGIGPKRRQALLKFMGGLHELKRASREE----IAKVPGISKALAEKI 609 >gi|325956729|ref|YP_004292141.1| transposase [Lactobacillus acidophilus 30SC] gi|325333294|gb|ADZ07202.1| transposase [Lactobacillus acidophilus 30SC] Length = 365 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 145 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 204 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 205 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 248 >gi|148284229|ref|YP_001248319.1| helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V) [Orientia tsutsugamushi str. Boryong] gi|146739668|emb|CAM79461.1| Helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V) [Orientia tsutsugamushi str. Boryong] Length = 731 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++ L G+G A ++ L I Q+ + ++PGI A +I Sbjct: 96 EKYLASGLIK--GIGPIYAKKLVQTFGLDVL-TVIENQDP-ALKKVPGIGPIRAKKI 148 >gi|227545269|ref|ZP_03975318.1| transposase [Lactobacillus reuteri CF48-3A] gi|227184751|gb|EEI64822.1| transposase [Lactobacillus reuteri CF48-3A] Length = 410 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 201 LETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILS 260 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ IPGI A RI++EL Sbjct: 261 AEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGD 304 >gi|317486174|ref|ZP_07945013.1| excinuclease ABC [Bilophila wadsworthia 3_1_6] gi|316922565|gb|EFV43812.1| excinuclease ABC [Bilophila wadsworthia 3_1_6] Length = 671 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 13/115 (11%) Query: 21 VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGF------LSDLDRQWFML 74 V I+ P R+ + L L H+R F + Sbjct: 560 AGNVGDRIFLPGRS-NPLPLRDGSAELLFLQHIRDTAHH---FVIGRHRRARAGAALSAE 615 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L + GVG A + A + +II +A IPGI + A + LK Sbjct: 616 LLRIPGVGKATARLLWDHFKALD---AIIAATPAQLAAIPGIGPRKAEALAGSLK 667 >gi|296269970|ref|YP_003652602.1| excinuclease ABC subunit C [Thermobispora bispora DSM 43833] gi|296092757|gb|ADG88709.1| excinuclease ABC, C subunit [Thermobispora bispora DSM 43833] Length = 644 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 16/98 (16%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM-LLQSVQGVGARVAMGVLSRI 93 L L +I D F T+ R S + L + G+G +L Sbjct: 558 LYLLQRIRDEAHRFAITYHR----------SKRSKALKESALDGIPGLGPARRQALLRHF 607 Query: 94 -TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + L ++ + I +PGI A I++ L+G Sbjct: 608 GSLKRLRDATEEE----IRAVPGIGPATAEAIVSALRG 641 >gi|281200766|gb|EFA74984.1| hypothetical protein PPL_12018 [Polysphondylium pallidum PN500] Length = 880 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQ-NSKV-----IAQIPGISMKIASRIMTE 127 Q + GVGA++A V + +L + I LQ + K+ I+++ GI IA +++ E Sbjct: 242 QKLDGVGAKIAKKVQEILDTGKLAKLIKLQSDEKLVAINNISRVSGIGPAIAKKLVEE 299 >gi|116514226|ref|YP_813132.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093541|gb|ABJ58694.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 189 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 21 MAINNILSAEEECQTALQEMAKLTPKRDLEILTSIPGIGENTALRIISELGD 72 >gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052] gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052] Length = 663 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 33/202 (16%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARV----- 85 TLSC ++ V R+ + + GF Q F L +S+ + ++ Sbjct: 423 NTLSCKPQL---VKTIVHYASRE-AMNIAGFSERTAEQLFEKLNIKSISDL-YKLKEEDL 477 Query: 86 -AMGVLSRITATELVESIILQNSKVIAQ------IPGISMKIASRIM-----TE-LKGKA 132 + + A L+E+I + IP + +K A ++ E LK A Sbjct: 478 IGLEKFAAKKAQNLLEAIEKSKDCELYAFIYALGIPNVGVKTAKDLVSRFESIEGLKN-A 536 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 V QD+ + + + I L++LG V++ + K + Sbjct: 537 TFEELVGVQDVGDIVAQGVLAFFKEEKVLQTIEELLSLGVSPKYEEKEVIASAFEGKTVV 596 Query: 193 DDSQI-------IRLALRAISC 207 + I+ L ++ Sbjct: 597 ATGSLKNYSRTEIKDKLESLGA 618 >gi|302343840|ref|YP_003808369.1| recombination protein RecR [Desulfarculus baarsii DSM 2075] gi|301640453|gb|ADK85775.1| recombination protein RecR [Desulfarculus baarsii DSM 2075] Length = 192 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 7/20 (35%), Positives = 11/20 (55%) Query: 109 VIAQIPGISMKIASRIMTEL 128 + ++PGI K A R+ L Sbjct: 3 ALCRLPGIGRKTAERLALHL 22 >gi|315150112|gb|EFT94128.1| comEA protein [Enterococcus faecalis TX0012] Length = 225 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVDRL 217 >gi|255994276|ref|ZP_05427411.1| recombination protein RecR [Eubacterium saphenum ATCC 49989] gi|255993944|gb|EEU04033.1| recombination protein RecR [Eubacterium saphenum ATCC 49989] Length = 198 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 4/46 (8%) Query: 107 SKVIAQIPGISMKIASRI---MTELKG-KAISLSSVVQQDMSCVNK 148 ++++PGI K A R+ +T+++ KA+S+S +++ ++ + Sbjct: 11 ITELSRLPGIGRKTAQRLAIFITDMEDNKALSISRAIEEAVNNLKP 56 >gi|331701090|ref|YP_004398049.1| RecD/TraA family helicase [Lactobacillus buchneri NRRL B-30929] gi|329128433|gb|AEB72986.1| helicase, RecD/TraA family [Lactobacillus buchneri NRRL B-30929] Length = 827 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 21/108 (19%) Query: 107 SKVIA--QIPGISMKIASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAI 161 K ++ Q PG+ K A R++ L AI + V D+ K ++ I Sbjct: 103 VKYLSGDQFPGVGKKTAERVVDVLGDDAIEKITADNRVLDDVPISAKLRSAIIENLDADD 162 Query: 162 NAISALVNL---GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 N +V L G+ A+ A+ ++ AL+ IS Sbjct: 163 NLEKTIVGLNSYGFSSAIAS-AIYQKYHED------------ALKIIS 197 >gi|257438675|ref|ZP_05614430.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165] gi|257198904|gb|EEU97188.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165] Length = 615 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V GVG + A ++++ + V ++ + PG+ ++A I Sbjct: 562 TLTEVPGVGPKTAKALMTQFKS---VGAVREATPDQLENTPGVGPQLAQTI 609 >gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502] gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC 19397] gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall] gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502] gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397] gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall] Length = 664 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 34/212 (16%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y YC TLSC ++ V R+ + + GF Q F L ++ + Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468 Query: 82 G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127 ++ L + + L+++I + IP + K A+ ++ + Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182 K ++ ++Q + + + S+ F + I L+NLG + Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKVISNIEELLNLGVKPYYEEERID 588 Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207 +K I + I+ L+++ Sbjct: 589 ENPFMDKTIVVTGSLNNYSRGEIKDKLQSLGA 620 >gi|146328633|ref|YP_001209842.1| recombination protein RecR [Dichelobacter nodosus VCS1703A] gi|166221936|sp|A5EY33|RECR_DICNV RecName: Full=Recombination protein recR gi|146232103|gb|ABQ13081.1| recombination protein RecR [Dichelobacter nodosus VCS1703A] Length = 201 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 19/40 (47%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146 + + + G+ K A R+ +L K + ++ + + ++ Sbjct: 11 VQALTCLSGVGKKTAQRMALDLLLKKNAEAATLAKALTTA 50 >gi|116514767|ref|YP_813673.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116094082|gb|ABJ59235.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 407 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 37/104 (35%) Query: 64 LSDLDRQWFMLLQSVQGVGARVA-----------------------------MGVLSRIT 94 L + L+ + G+G + A M + + ++ Sbjct: 187 LETKEVDIIDFLKGLSGIGKKRANDITQSLIRLAKVACPAVKKNSAHIRGLKMAINNILS 246 Query: 95 ATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 A E ++ + + + +++ +PGI A RI++EL Sbjct: 247 AEEECQTALQEMAKLAPKRDLEILTSLPGIGENTALRIISELGD 290 >gi|110637455|ref|YP_677662.1| recombination protein RecR [Cytophaga hutchinsonii ATCC 33406] gi|122966886|sp|Q11W94|RECR_CYTH3 RecName: Full=Recombination protein recR gi|110280136|gb|ABG58322.1| recombination protein [Cytophaga hutchinsonii ATCC 33406] Length = 205 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 110 IAQIPGISMKIASRIMTELKGKAISLSSVVQQDM 143 I+++PGI K A R++ L K S + + Sbjct: 15 ISKLPGIGKKTALRLVLHLLKKESKESESLANAL 48 >gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra] gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra] Length = 664 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 34/212 (16%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y YC TLSC ++ V R+ + + GF Q F L ++ + Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468 Query: 82 G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127 ++ L + + L+++I + IP + K A+ ++ + Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182 K ++ ++Q + + + S+ F + I L+NLG + Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERID 588 Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207 +K I + I+ L+++ Sbjct: 589 ENPFMDKTIVVTGSLNNYSRGEIKDKLQSLGA 620 >gi|186682939|ref|YP_001866135.1| phospholipase D/transphosphatidylase [Nostoc punctiforme PCC 73102] gi|186465391|gb|ACC81192.1| phospholipase D/Transphosphatidylase [Nostoc punctiforme PCC 73102] Length = 186 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%) Query: 90 LSRITATELVESIILQNSKV-----IAQIPGISMKIASRIMT 126 + +++EL ++I N + + +PG+ K+A RI+ Sbjct: 113 IKSSSSSEL-QAIKQININIASLPELETLPGVGKKLAQRIIL 153 >gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str. Langeland] gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland] gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613] Length = 664 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 34/212 (16%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y YC TLSC ++ V R+ + + GF Q F L ++ + Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468 Query: 82 G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127 ++ L + + L+++I + IP + K A+ ++ + Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182 K ++ ++Q + + + S+ F + I L+NLG + Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERID 588 Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207 +K I + I+ L+++ Sbjct: 589 ENPFMDKTIVVTGSLNNYSRGEIKDKLQSLGA 620 >gi|220909545|ref|YP_002484856.1| recombination protein RecR [Cyanothece sp. PCC 7425] gi|254790763|sp|B8HXF0|RECR_CYAP4 RecName: Full=Recombination protein recR gi|219866156|gb|ACL46495.1| recombination protein RecR [Cyanothece sp. PCC 7425] Length = 205 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 6/22 (27%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + + ++PG+ K A R+ L Sbjct: 13 IEQLQRLPGVGPKTAQRLALHL 34 >gi|325126438|gb|ADY85768.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 169 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 87 MGVLSRITATELVESIILQ--------NSKVIAQIPGISMKIASRIMTELKG 130 M + + ++A E ++ + + + +++ IPGI A RI++EL Sbjct: 1 MAINNILSAEEECQTALQEMAKLAPKRDLEILTSIPGIGENTALRIISELGD 52 >gi|158520557|ref|YP_001528427.1| recombination protein RecR [Desulfococcus oleovorans Hxd3] gi|226738998|sp|A8ZU38|RECR_DESOH RecName: Full=Recombination protein recR gi|158509383|gb|ABW66350.1| recombination protein RecR [Desulfococcus oleovorans Hxd3] Length = 199 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 5/34 (14%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + +I ++++PGI K A R+ L Sbjct: 5 PPSIRNAISH-----LSRLPGIGQKTAERLAMHL 33 >gi|85712671|ref|ZP_01043717.1| Recombinational DNA repair protein [Idiomarina baltica OS145] gi|85693521|gb|EAQ31473.1| Recombinational DNA repair protein [Idiomarina baltica OS145] Length = 202 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 18/53 (33%) Query: 110 IAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 + ++PG+ K A R+ L + + + + + H + Sbjct: 16 LKRLPGVGKKTAQRMAFHLLERDREGAQRLADSLHNAVERVGHCQQCRTLTEE 68 >gi|323481438|gb|ADX80877.1| competence protein ComEA helix-hairpin-helix repeat region domain protein [Enterococcus faecalis 62] Length = 214 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + +PGI K R+ Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVPGIGEKTVDRL 206 >gi|313677041|ref|YP_004055037.1| recombination protein recr [Marivirga tractuosa DSM 4126] gi|312943739|gb|ADR22929.1| recombination protein RecR [Marivirga tractuosa DSM 4126] Length = 202 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 28/68 (41%) Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156 E +I +++PGI K A R++ L + + ++ + Q + + + + Sbjct: 2 EFSSKLIESAVNEFSKLPGIGKKTALRLVLHLLKQDENFTTDIAQSLVDMRQNIKYCKKC 61 Query: 157 PSFAINAI 164 + + + Sbjct: 62 HNISDEVV 69 >gi|308049925|ref|YP_003913491.1| Excinuclease ABC subunit C [Ferrimonas balearica DSM 9799] gi|307632115|gb|ADN76417.1| Excinuclease ABC subunit C [Ferrimonas balearica DSM 9799] Length = 612 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+S+ G+GA+ +L + EL + + + +A++PGIS ++A +I Sbjct: 560 LESIPGIGAKRRQQLLKFLGGMQELKRASVAE----LAKVPGISPQLAQKI 606 >gi|284166887|ref|YP_003405166.1| DNA mismatch repair protein MutS [Haloterrigena turkmenica DSM 5511] gi|284016542|gb|ADB62493.1| DNA mismatch repair protein MutS domain protein [Haloterrigena turkmenica DSM 5511] Length = 694 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+++ GVG + A + + ++ + IA PGI+ A+RI Sbjct: 3 LETIPGVGEKTARALEALDEPE---RALRRGDVATIATAPGITQGRAARI 49 >gi|325120871|emb|CBZ56426.1| hypothetical protein NCLIV_068500 [Neospora caninum Liverpool] Length = 620 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 21/76 (27%) Query: 71 WFMLLQSVQGV----GARVAMGVLSRITATELVESIILQNSKVIA--------------- 111 F LQS GV A A ++R+ A LV++++ ++ ++A Sbjct: 182 VFRKLQSSPGVICIAAAYEADAQMARLAADGLVDAVLTEDGDLLAYQARKLICVLAGCDY 241 Query: 112 --QIPGISMKIASRIM 125 IPG+ ++ A+R++ Sbjct: 242 APNIPGVGVRTAARLV 257 >gi|323698319|ref|ZP_08110231.1| excinuclease ABC, C subunit [Desulfovibrio sp. ND132] gi|323458251|gb|EGB14116.1| excinuclease ABC, C subunit [Desulfovibrio desulfuricans ND132] Length = 604 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L S+ G+G R A + R + E +++ + I + GI + A +I Sbjct: 544 ELTSLPGIGPRTARILWDRFESLE---AMLEADPGTIGGLSGIGPRRAEKI 591 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 110 IAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 + +PGI + A RI L + SL ++++ D + A+ +L + Sbjct: 545 LTSLPGIGPRTA-RI---LWDRFESLEAMLEADPGTIGGLSGIGPRRAEKIHAALQSLKS 600 >gi|319775000|ref|YP_004137488.1| UvrABC system protein C [Haemophilus influenzae F3047] gi|329123098|ref|ZP_08251668.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116] gi|317449591|emb|CBY85796.1| UvrABC system protein C [Haemophilus influenzae F3047] gi|327471653|gb|EGF17095.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116] Length = 609 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS+K+A RI LK Sbjct: 556 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISLKLAERIFETLKN 608 >gi|21673022|ref|NP_661087.1| hypothetical protein CT0181 [Chlorobium tepidum TLS] gi|21646087|gb|AAM71429.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 463 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 13/107 (12%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82 V Y + P+ + L + L + +R +GF ++ +L + Sbjct: 296 VYYSAFVPVNDDNRLPVLAAPPLLREHRLYQADWLLRFYGFSAEE-----ILSDDAPNLD 350 Query: 83 ----ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A + I + + ++PGI + A RI+ Sbjct: 351 ESFDPKTAWALRH---PEFFPVEINRADYATLLRVPGIGITSAKRII 394 >gi|163847590|ref|YP_001635634.1| excinuclease ABC subunit C [Chloroflexus aurantiacus J-10-fl] gi|222525445|ref|YP_002569916.1| excinuclease ABC subunit C [Chloroflexus sp. Y-400-fl] gi|163668879|gb|ABY35245.1| excinuclease ABC, C subunit [Chloroflexus aurantiacus J-10-fl] gi|222449324|gb|ACM53590.1| excinuclease ABC, C subunit [Chloroflexus sp. Y-400-fl] Length = 651 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L+ + G+G + +L + + +I + +A +PG++ K A ELK Sbjct: 601 LEDIPGIGPKRKRALLKAFGSLD---AIRQASIDELAAVPGMTRKAAE----ELK 648 >gi|82523814|emb|CAI78557.1| exconuclease ABC subunit C [uncultured Chloroflexi bacterium] Length = 500 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 11/103 (10%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ----WFMLLQSVQGVG 82 ++ P ++ S L L++ +R + R + S R+ L +V G+G Sbjct: 397 ELFIPGQSESLLLPRHSQA-LYLVQRVRDEAHR-YAITSHRQRRDKAGIASQLDTVPGIG 454 Query: 83 ARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 +L+ ++ ++ + + IPGI++K+A I Sbjct: 455 PMRRKALLAHFGGLQQIRQASTEE----LLTIPGITIKLAQAI 493 >gi|283458163|ref|YP_003362780.1| nuclease subunit of the excinuclease complex [Rothia mucilaginosa DY-18] gi|283134195|dbj|BAI64960.1| nuclease subunit of the excinuclease complex [Rothia mucilaginosa DY-18] Length = 646 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 75 LQSVQGVG-ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 L V G+G + A + + ++ ++ + + +PGI +A +I+ L Sbjct: 595 LDEVPGLGEVKRAALIKHFGSVAQIKQASAEE----LTAVPGIGPALAQKILAAL 645 >gi|221632593|ref|YP_002521814.1| PHP domain-containing protein [Thermomicrobium roseum DSM 5159] gi|221156427|gb|ACM05554.1| PHP domain protein [Thermomicrobium roseum DSM 5159] Length = 581 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 30/156 (19%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQSVQGVGARVAMGV-- 89 L + +G +E ++R ++ + L R+ + L V G+G A + Sbjct: 54 LDEIPGVGKAIAAKIEEYLRTGRLEYY---EQLKREVPLQAVDLLEVPGIGPARAHLLYE 110 Query: 90 -LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 L T +L+++ + ++PG K+ RI E Sbjct: 111 QLGITTIQDLLQAAQEH---KLRKLPGFGEKLEERIARE-------------AARLMQRS 154 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 ++ + A ++AL A A+ Sbjct: 155 KRLLLGIALPVAEEVVAAL-----RPHAAIRAIDPA 185 >gi|168182222|ref|ZP_02616886.1| helicase, RecD/TraA family [Clostridium botulinum Bf] gi|237793487|ref|YP_002861039.1| helicase, RecD/TraA family [Clostridium botulinum Ba4 str. 657] gi|182674605|gb|EDT86566.1| helicase, RecD/TraA family [Clostridium botulinum Bf] gi|229263170|gb|ACQ54203.1| helicase, RecD/TraA family [Clostridium botulinum Ba4 str. 657] Length = 744 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + G+G A ++ + L I+ N + + +I GI K I Sbjct: 88 ISGIGPVTAKKIVKKFGEETLN--ILENNIERLTEIEGIGKKKIEII 132 >gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160] gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase [Natronomonas pharaonis DSM 2160] Length = 845 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 + ++Q + ++ +V VG A +L + VE+++ + + + + G+ A R Sbjct: 777 KTLAEKQEY-VVSAVAEVGPVTARALLEHFGS---VEAVMSADEEALQAVDGVGDVTAER 832 Query: 124 I 124 I Sbjct: 833 I 833 >gi|326389756|ref|ZP_08211321.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994238|gb|EGD52665.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200] Length = 615 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 17/99 (17%) Query: 27 IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 I P+ T + +I + F T ++ +++ L ++ G+G + Sbjct: 523 EIDIPMTTKAFRLVAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572 Query: 85 VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 A + + E+ + +++ + ++ G++ K A Sbjct: 573 RAKALYDAFKSIEEIKRA-SVED---LKKVEGMNEKAAQ 607 >gi|293568334|ref|ZP_06679657.1| helicase, RecD/TraA family [Enterococcus faecium E1071] gi|291588943|gb|EFF20768.1| helicase, RecD/TraA family [Enterococcus faecium E1071] Length = 862 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 88 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171 >gi|257880325|ref|ZP_05659978.1| helicase RecD/TraA [Enterococcus faecium 1,230,933] gi|257814553|gb|EEV43311.1| helicase RecD/TraA [Enterococcus faecium 1,230,933] Length = 857 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 83 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 141 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 142 TIRLNHGMDQVIMGLNRYGFGSQLA 166 >gi|225418679|ref|ZP_03761868.1| hypothetical protein CLOSTASPAR_05903 [Clostridium asparagiforme DSM 15981] gi|225041800|gb|EEG52046.1| hypothetical protein CLOSTASPAR_05903 [Clostridium asparagiforme DSM 15981] Length = 579 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 26/109 (23%) Query: 29 YCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGFLSDLDR--------QWFMLLQSV 78 Y P+ S L + G L + +R +GF S + F+ Sbjct: 392 YVPVNLDSSLPALPGGPPLLREHRLYQADWLLRFYGF-SAEELLSEGQPNFNVFLD---- 446 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + + + ++PG+ +K A RI+ Sbjct: 447 ----PKCDWALRHLEQFPVE-----VNRADYASLLRVPGMGVKSARRIV 486 >gi|162448235|ref|YP_001621367.1| recombination DNA repair protein [Acholeplasma laidlawii PG-8A] gi|161986342|gb|ABX81991.1| recombination DNA repair protein [Acholeplasma laidlawii PG-8A] Length = 195 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128 IIL+ + ++PGI K A R+ L Sbjct: 5 IILELIDDLKKLPGIGEKTAERLALHL 31 >gi|76800945|ref|YP_325953.1| DNA mismatch repair protein MutS-like protein [Natronomonas pharaonis DSM 2160] gi|76556810|emb|CAI48384.1| DNA mismatch repair protein MutS homolog [Natronomonas pharaonis DSM 2160] Length = 667 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 F L+++ GVG + A + ++ + IA+ PGI Sbjct: 3 FEELEAIPGVGEKTAERLAELDDPE---AALSAGDVATIARAPGI 44 >gi|33865780|ref|NP_897339.1| excinuclease ABC subunit C [Synechococcus sp. WH 8102] gi|81574546|sp|Q7U6U0|UVRC_SYNPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|33632950|emb|CAE07761.1| Excinuclease ABC subunit C (UvrC) [Synechococcus sp. WH 8102] Length = 652 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R L + GVG + +L+ + +++I + + ++++ PG+ +A I Sbjct: 575 ERMKRSRLSDIPGVGPKRVKDLLAHFHS---IDAIQMASVDLLSKAPGVGTALARDI 628 >gi|69249444|ref|ZP_00604980.1| Helicase RecD/TraA [Enterococcus faecium DO] gi|293559443|ref|ZP_06675981.1| helicase, RecD/TraA family [Enterococcus faecium E1162] gi|294621970|ref|ZP_06701115.1| helicase, RecD/TraA family [Enterococcus faecium U0317] gi|314937989|ref|ZP_07845300.1| helicase, RecD/TraA family [Enterococcus faecium TX0133a04] gi|314941585|ref|ZP_07848469.1| helicase, RecD/TraA family [Enterococcus faecium TX0133C] gi|314948429|ref|ZP_07851817.1| helicase, RecD/TraA family [Enterococcus faecium TX0082] gi|314951382|ref|ZP_07854434.1| helicase, RecD/TraA family [Enterococcus faecium TX0133A] gi|314991311|ref|ZP_07856790.1| helicase, RecD/TraA family [Enterococcus faecium TX0133B] gi|314995350|ref|ZP_07860456.1| helicase, RecD/TraA family [Enterococcus faecium TX0133a01] gi|68194155|gb|EAN08688.1| Helicase RecD/TraA [Enterococcus faecium DO] gi|291598449|gb|EFF29521.1| helicase, RecD/TraA family [Enterococcus faecium U0317] gi|291606598|gb|EFF35994.1| helicase, RecD/TraA family [Enterococcus faecium E1162] gi|313590443|gb|EFR69288.1| helicase, RecD/TraA family [Enterococcus faecium TX0133a01] gi|313594084|gb|EFR72929.1| helicase, RecD/TraA family [Enterococcus faecium TX0133B] gi|313596440|gb|EFR75285.1| helicase, RecD/TraA family [Enterococcus faecium TX0133A] gi|313599605|gb|EFR78448.1| helicase, RecD/TraA family [Enterococcus faecium TX0133C] gi|313642664|gb|EFS07244.1| helicase, RecD/TraA family [Enterococcus faecium TX0133a04] gi|313645154|gb|EFS09734.1| helicase, RecD/TraA family [Enterococcus faecium TX0082] Length = 862 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 88 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171 >gi|257882179|ref|ZP_05661832.1| helicase RecD/TraA [Enterococcus faecium 1,231,502] gi|257890984|ref|ZP_05670637.1| helicase RecD/TraA [Enterococcus faecium 1,231,410] gi|257894239|ref|ZP_05673892.1| helicase RecD/TraA [Enterococcus faecium 1,231,408] gi|260562371|ref|ZP_05832885.1| helicase RecD/TraA [Enterococcus faecium C68] gi|257817837|gb|EEV45165.1| helicase RecD/TraA [Enterococcus faecium 1,231,502] gi|257827344|gb|EEV53970.1| helicase RecD/TraA [Enterococcus faecium 1,231,410] gi|257830618|gb|EEV57225.1| helicase RecD/TraA [Enterococcus faecium 1,231,408] gi|260073295|gb|EEW61636.1| helicase RecD/TraA [Enterococcus faecium C68] Length = 857 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 83 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 141 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 142 TIRLNHGMDQVIMGLNRYGFGSQLA 166 >gi|294618819|ref|ZP_06698345.1| helicase, RecD/TraA family [Enterococcus faecium E1679] gi|291594942|gb|EFF26293.1| helicase, RecD/TraA family [Enterococcus faecium E1679] Length = 862 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 88 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171 >gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3] gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3] Length = 706 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 22/116 (18%) Query: 20 DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDL--------D--- 68 D+ G+ Y + + IGD + + L GF + Sbjct: 464 DIDGLGYETATALLEAGRVRDIGD-----IFHLTPESFEGLRGFAQKKIDQILRGVEAAR 518 Query: 69 -RQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 R + LL S++ VG A + + + E + + ++ +A + G+ KIA Sbjct: 519 HRPLWRLLVGLSIRHVGPTAARALARELRSLEAIAATSAED---LAAVEGVGPKIA 571 >gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro] gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri str. Fusaro] Length = 938 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ ++ +G + A +L + VE+I+ ++K + ++ I K A++I Sbjct: 881 LVSAIADIGPKAARNLLLHFGS---VEAIMKADAKELKKVNLIGPKRATKI 928 >gi|320333799|ref|YP_004170510.1| PHP domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319755088|gb|ADV66845.1| PHP domain protein [Deinococcus maricopensis DSM 21211] Length = 562 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 23/138 (16%) Query: 73 MLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + L V+G+G + + + L E+ +A + G K A +++ Sbjct: 90 LTLLRVRGLGPKKVRALWDAGIDSLEALREAARDG---RLAALKGFGAKTAVKLL----- 141 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA---TTAVVSVLKK 187 + + + + H+ AL L A A ++ Sbjct: 142 --------EGAEFALAMQARQHLSVGVRIVETLTEALAGL--EPRAAGGVRRAAETIEDA 191 Query: 188 EKNIADDSQIIRLALRAI 205 + + ++ +R L + Sbjct: 192 QVTVTGTAEAVRARLTGL 209 >gi|293553072|ref|ZP_06673714.1| helicase, RecD/TraA family [Enterococcus faecium E1039] gi|291602781|gb|EFF32991.1| helicase, RecD/TraA family [Enterococcus faecium E1039] Length = 862 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 88 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171 >gi|289566003|ref|ZP_06446441.1| RecD/TraA family helicase [Enterococcus faecium D344SRF] gi|294616193|ref|ZP_06695990.1| helicase, RecD/TraA family [Enterococcus faecium E1636] gi|289162201|gb|EFD10063.1| RecD/TraA family helicase [Enterococcus faecium D344SRF] gi|291590948|gb|EFF22660.1| helicase, RecD/TraA family [Enterococcus faecium E1636] Length = 862 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 88 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 146 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171 >gi|257885372|ref|ZP_05665025.1| helicase RecD/TraA [Enterococcus faecium 1,231,501] gi|257821228|gb|EEV48358.1| helicase RecD/TraA [Enterococcus faecium 1,231,501] Length = 857 Score = 38.9 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 83 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 141 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 142 TIRLNHGMDQVIMGLNRYGFGSQLA 166 >gi|261209254|ref|ZP_05923646.1| helicase RecD/TraA [Enterococcus faecium TC 6] gi|260076800|gb|EEW64535.1| helicase RecD/TraA [Enterococcus faecium TC 6] Length = 857 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 83 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 141 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 142 TIRLNHGMDQVIMGLNRYGFGSQLA 166 >gi|167758863|ref|ZP_02430990.1| hypothetical protein CLOSCI_01206 [Clostridium scindens ATCC 35704] gi|167663603|gb|EDS07733.1| hypothetical protein CLOSCI_01206 [Clostridium scindens ATCC 35704] Length = 444 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 12/63 (19%) Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 + A+ L I + K++ ++PGI K A+RI+ KA L ++ Sbjct: 319 PKCNWALKHLEYFPVE-----INRADYKMLLRVPGIGYKSATRIV-----KARRLGNLNF 368 Query: 141 QDM 143 QD+ Sbjct: 369 QDI 371 >gi|163750247|ref|ZP_02157489.1| recombination protein RecR [Shewanella benthica KT99] gi|161330103|gb|EDQ01087.1| recombination protein RecR [Shewanella benthica KT99] Length = 199 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL++ + +PG+ K A R+ +L + + Q +S + H Sbjct: 7 VDELIQ--------TLKCLPGVGPKSAQRMAFQLLERDRKAGQSLSQALSKAMSDVGHCQ 58 Query: 155 SMPSFAINA 163 S +F Sbjct: 59 SCRTFTEEV 67 >gi|307294418|ref|ZP_07574262.1| excinuclease ABC, C subunit [Sphingobium chlorophenolicum L-1] gi|306880569|gb|EFN11786.1| excinuclease ABC, C subunit [Sphingobium chlorophenolicum L-1] Length = 637 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V G+G +L V+S L++ + + PG+S +A +I Sbjct: 585 LDEVPGIGPSRKKALLMHFGTARAVKSAALED---LLKAPGVSKAVAQQI 631 >gi|20094872|ref|NP_614719.1| topoisomerase V [Methanopyrus kandleri AV19] gi|14325803|gb|AAK60014.1| topoisomerase V [Methanopyrus kandleri] gi|19888102|gb|AAM02649.1| Topoisomerase V [Methanopyrus kandleri AV19] Length = 984 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 52/178 (29%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------ 125 F L +++GVG ++A +L + L L ++ ++ G+ ++A R++ Sbjct: 621 FKFLLNIEGVGPKLAERILEAVDYD-LERLASLNPEELAEKVEGLGEELAERVVYAARER 679 Query: 126 TELKGKAIS---------------------------LSSVVQQDMSCVNKEQAHICSMPS 158 E + K+ S + N E + + +P Sbjct: 680 VESRRKSGRQERSEEEWKEWLERKVGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPG 739 Query: 159 FAINAISALVNLGYG--------QDQATTAVV---SVLKKEKNIADDSQIIRLALRAI 205 A++ LV GY +A + SV K ++ D LR + Sbjct: 740 IGDEAVARLVP-GYKTLRDAGLTPAEAERVLKRYGSVSKVQEGATPDE------LREL 790 >gi|87302683|ref|ZP_01085494.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701] gi|87282566|gb|EAQ74524.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701] Length = 687 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R L + G+G + +L+ + +++I L + + IA PG+ +A ++ Sbjct: 602 ERMKRSRLSEIPGLGPKRVRDLLAHFRS---IDAIQLASPEQIAAAPGVGPALAQQV 655 >gi|170769376|ref|ZP_02903829.1| excinuclease ABC, C subunit [Escherichia albertii TW07627] gi|170121700|gb|EDS90631.1| excinuclease ABC, C subunit [Escherichia albertii TW07627] Length = 610 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQALAEKIFWSLK 609 >gi|294629435|ref|ZP_06707995.1| RecD/TraA family helicase [Streptomyces sp. e14] gi|292832768|gb|EFF91117.1| RecD/TraA family helicase [Streptomyces sp. e14] Length = 754 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A + L II + K + ++PG+ K +I Sbjct: 110 VKGIGPVFADRITQHFGTDTLR--IIEEEPKRLIEVPGLGPKRTKKI 154 >gi|237808305|ref|YP_002892745.1| excinuclease ABC, C subunit [Tolumonas auensis DSM 9187] gi|237500566|gb|ACQ93159.1| excinuclease ABC, C subunit [Tolumonas auensis DSM 9187] Length = 614 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 15/110 (13%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL------SDLDRQWFMLLQSV 78 T + D L + H+R + R F ++ LL+ V Sbjct: 510 GLETLIFGNTHEEIHLPADMPALHLIQHIRDESHR---FAITGHRQRRNKKRTESLLEKV 566 Query: 79 QGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 GVGA+ +L + E++ + + +A++PGIS +A R++ + Sbjct: 567 PGVGAKRRQALLKYLGGMQEIIRATPDE----LAKVPGISPALA-RVIYD 611 >gi|167039707|ref|YP_001662692.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X514] gi|300915044|ref|ZP_07132359.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561] gi|307724967|ref|YP_003904718.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X513] gi|229557872|sp|B0K680|UVRC_THEPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|166853947|gb|ABY92356.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X514] gi|300888768|gb|EFK83915.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561] gi|307582028|gb|ADN55427.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X513] Length = 615 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 17/99 (17%) Query: 27 IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 I P+ T + +I + F T ++ +++ L ++ G+G + Sbjct: 523 EIDIPMTTKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGKK 572 Query: 85 VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 A + + E+ + +++ + ++ G++ K A Sbjct: 573 RAKALYDAFKSIEEIKRA-SVED---LKKVEGMNEKAAQ 607 >gi|316939783|gb|ADU73817.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 1313] Length = 708 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++G+G A ++ + +I + + ++PGI K I Sbjct: 90 IKGIGPVNAKRIVKVFKEDTIR--VIEEEPDRLIEVPGIGKKRVEMI 134 >gi|258614725|ref|ZP_05712495.1| RecD/TraA family helicase [Enterococcus faecium DO] Length = 797 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 23 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQISGLTKPKREMLAE 81 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 82 TIRLNHGMDQVIMGLNRYGFGSQLA 106 >gi|318075147|ref|ZP_07982479.1| excinuclease ABC subunit C [Streptomyces sp. SA3_actF] Length = 790 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 19/138 (13%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L ++ D F T+ R S ++ F L V G+G +L Sbjct: 556 LYLLQRVRDEAHRFAITYQR----------SKRAKR-FRAGPLDEVPGLGQARKQALLKH 604 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 + +L + I Q I ++PGI K A I+ ++ + V + + + Sbjct: 605 FGSVKKLRAATIEQ----ICEVPGIGRKTAETILATFA-RSEPGAPAVNMTTGEILDDGS 659 Query: 152 HICSMPSFAINAISALVN 169 + + A VN Sbjct: 660 EDTTSEQPEPDTEDATVN 677 >gi|318056352|ref|ZP_07975075.1| excinuclease ABC subunit C [Streptomyces sp. SA3_actG] Length = 930 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 19/138 (13%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L ++ D F T+ R S ++ F L V G+G +L Sbjct: 556 LYLLQRVRDEAHRFAITYQR----------SKRAKR-FRAGPLDEVPGLGQARKQALLKH 604 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 + +L + I Q I ++PGI K A I+ ++ + V + + + Sbjct: 605 FGSVKKLRAATIEQ----ICEVPGIGRKTAETILATFA-RSEPGAPAVNMTTGEILDDGS 659 Query: 152 HICSMPSFAINAISALVN 169 + + A VN Sbjct: 660 EDTTSEQPEPDTEDATVN 677 >gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group II euryarchaeote KM3-136-D10] Length = 928 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 7/69 (10%) Query: 65 SDLDRQW--FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 + ++Q LL+S+ +G A +L + E+ + + + Q+ GI ++ Sbjct: 864 DEQEKQTNKLYLLESLPNIGPTTAKRLLDHFKSIEV---LTQADEAELCQVTGIGP-TSA 919 Query: 123 RIMTE-LKG 130 R + E L+ Sbjct: 920 RAILEVLRD 928 >gi|307726755|ref|YP_003909968.1| PHP domain-containing protein [Burkholderia sp. CCGE1003] gi|307587280|gb|ADN60677.1| PHP domain protein [Burkholderia sp. CCGE1003] Length = 580 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 6/55 (10%) Query: 74 LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKIASRIM 125 L + G+G + + + +L + +++ PG K RI+ Sbjct: 95 ELLQIPGLGPKRVRALHEALDIQTLEDLDRAARQGRIRLL---PGFGEKTEQRII 146 >gi|187777242|ref|ZP_02993715.1| hypothetical protein CLOSPO_00789 [Clostridium sporogenes ATCC 15579] gi|187774170|gb|EDU37972.1| hypothetical protein CLOSPO_00789 [Clostridium sporogenes ATCC 15579] Length = 744 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + G+G A ++ + L I+ N + + +I GI K I Sbjct: 88 ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIEII 132 >gi|78044731|ref|YP_359139.1| excinuclease ABC subunit C [Carboxydothermus hydrogenoformans Z-2901] gi|90111061|sp|Q3AFE5|UVRC_CARHZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|77996846|gb|ABB15745.1| excinuclease ABC, C subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 607 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI--M 125 + LL+ V+G+G + +L++ + L E+ + + I +PGI+ +IA R+ + Sbjct: 548 KTLASLLEQVEGIGPKRRKQLLNKFGSIKNLREATVEE----ITAVPGITREIAERLKEL 603 Query: 126 TEL 128 E+ Sbjct: 604 LEM 606 >gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund 17B] gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B] Length = 667 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 25/175 (14%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90 TLSC ++ V + +D + + GF Q F L +S+ + ++ L Sbjct: 425 NTLSCKPQL---VKTIVH-YASRDAMNIAGFSEKTAEQLFEKLNIKSISDL-YKLKKEDL 479 Query: 91 SRIT------ATELVESIILQNSKVIAQ------IPGISMKIASRIMTELKG----KAIS 134 + + L+ +I + IP + +K A I+ + K K + Sbjct: 480 INLEKFGEKKSENLLNAIEKSKDCKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT 539 Query: 135 LSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD-QATTAVVSVLKK 187 +V QD+ + + IN I L+NLG V S+ K Sbjct: 540 FEELVSVQDVGDIVAQDVIEFFKEEKVINTIDELLNLGVNPIFDEVKIVESIFKD 594 >gi|323484316|ref|ZP_08089683.1| hypothetical protein HMPREF9474_01434 [Clostridium symbiosum WAL-14163] gi|323694684|ref|ZP_08108846.1| radical SAM domain-containing protein [Clostridium symbiosum WAL-14673] gi|323402310|gb|EGA94641.1| hypothetical protein HMPREF9474_01434 [Clostridium symbiosum WAL-14163] gi|323501276|gb|EGB17176.1| radical SAM domain-containing protein [Clostridium symbiosum WAL-14673] Length = 524 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y + P+ S L + L E + Q L +GF + D+ F + Sbjct: 332 VFYSAFVPVNHDSLLPALPGGPPLLREHRLYQADWLLRYYGFHASELLSEDKPNFNVFLD 391 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + ++PGI K A RI+ Sbjct: 392 -----PKCDWALRNLGEFPVE-----VNHAPYASLLRVPGIGTKSAMRIV 431 >gi|160943016|ref|ZP_02090254.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii M21/2] gi|158445710|gb|EDP22713.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii M21/2] Length = 617 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 12/110 (10%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 ++D G I T + + I D F + +Q + + Sbjct: 512 TRAIVDSDGREIAINMNRGTFTFITAIQDETHRFANAYRKQ---------QMKQKSYSST 562 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V GVG + A +L++ + V ++ + PG+ ++A I Sbjct: 563 LTEVPGVGPKTAKALLAQFKS---VGAVKDATPDQLENTPGVGRQLAQTI 609 >gi|222481008|ref|YP_002567245.1| DNA mismatch repair protein MutS domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222453910|gb|ACM58175.1| DNA mismatch repair protein MutS domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 665 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+++ GVGA+ A + + V ++ + IA+ PG+ Sbjct: 2 ELEAIPGVGAKTAAAL---HELDDPVATVESGDVAAIARAPGV 41 >gi|330720119|gb|EGG98525.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC2047] Length = 608 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 14/91 (15%) Query: 47 LFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGVGARVAMGVLSRIT-ATELV 99 L + H+R + R F RQ L+S+ GVG + +L+ E+ Sbjct: 524 LHLIQHIRDEAHR---FAITSHRQARGKTRRTSPLESIPGVGPKRRRELLTFFGGIQEVE 580 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + + IA++PGIS +A I L+ Sbjct: 581 RASAEE----IAKVPGISKSMAEEIYASLRN 607 >gi|294495750|ref|YP_003542243.1| PHP domain protein [Methanohalophilus mahii DSM 5219] gi|292666749|gb|ADE36598.1| PHP domain protein [Methanohalophilus mahii DSM 5219] Length = 570 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 6/49 (12%) Query: 75 LQSVQGVGARVAMGVLSRITAT---ELVESIILQNSKVIAQIPGISMKI 120 + ++G+G + A ++ + +L E+I Q + ++ G K Sbjct: 95 IIKIRGLGPKKAKKLMDELDIQSIPDLKEAINNQEIR---KLEGFGKKT 140 >gi|293571558|ref|ZP_06682580.1| helicase, RecD/TraA family [Enterococcus faecium E980] gi|291608364|gb|EFF37664.1| helicase, RecD/TraA family [Enterococcus faecium E980] Length = 856 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 88 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQVSGLTKPKREMLAE 146 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171 >gi|257899603|ref|ZP_05679256.1| helicase RecD/TraA [Enterococcus faecium Com15] gi|257837515|gb|EEV62589.1| helicase RecD/TraA [Enterococcus faecium Com15] Length = 856 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A +I+ EL G K I+ SV++Q ++ A Sbjct: 88 ANGIVAYLSSEKFPGIGKKTAEKIV-ELLGEDAIEKIIADPSVLKQVSGLTKPKREMLAE 146 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171 >gi|168177501|ref|ZP_02612165.1| helicase, RecD/TraA family [Clostridium botulinum NCTC 2916] gi|182671377|gb|EDT83351.1| helicase, RecD/TraA family [Clostridium botulinum NCTC 2916] Length = 744 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + G+G A ++ + L I+ N + + +I GI K I Sbjct: 88 ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIEII 132 >gi|167748267|ref|ZP_02420394.1| hypothetical protein ANACAC_03011 [Anaerostipes caccae DSM 14662] gi|317472189|ref|ZP_07931518.1| RecD/TraA family helicase [Anaerostipes sp. 3_2_56FAA] gi|167652259|gb|EDR96388.1| hypothetical protein ANACAC_03011 [Anaerostipes caccae DSM 14662] gi|316900278|gb|EFV22263.1| RecD/TraA family helicase [Anaerostipes sp. 3_2_56FAA] Length = 740 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 ++GVG +A ++ + II + + +A++ G++ K A I E K Sbjct: 88 IKGVGPAIAKRIVKKFKMDTFR--IIEEEPERLAEVKGVTEKRARSIAVEFSEK 139 >gi|311747123|ref|ZP_07720908.1| probable secreted glycosyl hydrolase [Algoriphagus sp. PR1] gi|311302608|gb|EAZ82996.2| probable secreted glycosyl hydrolase [Algoriphagus sp. PR1] Length = 1155 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 9/83 (10%) Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY---GQDQ 176 A R++ E + K VV+ +N ++ + AINA+ L LG Q Sbjct: 678 TAQRLIVETQNK-----EVVEGLYELINSQEVDEAGINGPAINALWTLKGLGELEGSNSQ 732 Query: 177 ATTAVVSVLKKEKNIADDSQIIR 199 A V L + A +R Sbjct: 733 AQDVVTKAL-SHPSAAVRKNAVR 754 >gi|239931154|ref|ZP_04688107.1| deoxyribonuclease [Streptomyces ghanaensis ATCC 14672] gi|291439519|ref|ZP_06578909.1| exodeoxyribonuclease V [Streptomyces ghanaensis ATCC 14672] gi|291342414|gb|EFE69370.1| exodeoxyribonuclease V [Streptomyces ghanaensis ATCC 14672] Length = 769 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A + L II + + + ++PG+ K RI Sbjct: 104 VKGIGPVFADRITQHFGLDTLK--IIEEEPERLVEVPGLGPKRTKRI 148 >gi|153939064|ref|YP_001389532.1| RecD/TraA family helicase [Clostridium botulinum F str. Langeland] gi|152934960|gb|ABS40458.1| helicase, RecD/TraA family [Clostridium botulinum F str. Langeland] Length = 744 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + G+G A ++ + L I+ N + + +I GI K I Sbjct: 88 ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIEII 132 >gi|170755250|ref|YP_001779796.1| RecD/TraA family helicase [Clostridium botulinum B1 str. Okra] gi|169120462|gb|ACA44298.1| helicase, RecD/TraA family [Clostridium botulinum B1 str. Okra] Length = 744 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + G+G A ++ + L I+ N + + +I GI K I Sbjct: 88 ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIEII 132 >gi|168699142|ref|ZP_02731419.1| helicase, RecD/TraA family protein [Gemmata obscuriglobus UQM 2246] Length = 777 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 30/151 (19%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTELKGKAISL 135 V+G+G A ++ L +I ++ Q+ GI K+ +I E + ++ + Sbjct: 116 VKGIGPGYARRIVDVFGDRTLE--VIDATPVMLTQVKGIGPKLVEKIRKSWEEQRESQKI 173 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISA----L----------------VNLGYGQD 175 +Q + + AI I A L V+LG D Sbjct: 174 LVFLQSHGIGTARAVRIYKTYGDQAIELIKANPYRLSGDIWGFGFKTADQLAVSLGIPPD 233 Query: 176 ---QATTAVVSVLKKEKNIADD---SQIIRL 200 +A AV VL++E +++R Sbjct: 234 SPFRAQAAVRHVLQEETGNGHVGFPEELLRE 264 >gi|307297547|ref|ZP_07577353.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916807|gb|EFN47189.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 256 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 14/71 (19%) Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITA--------TELVESIILQNSKVIAQIP 114 F + D L V G+G + +L+ I L ++ + +V+ +P Sbjct: 157 FRTSDD------LLKVPGIGPSILSEILASIVPLVGSEKQSGSLKVNVNTADEEVLCGLP 210 Query: 115 GISMKIASRIM 125 G+ IA RI+ Sbjct: 211 GVGPVIAKRIV 221 >gi|258593671|emb|CBE70012.1| Recombination protein recR [NC10 bacterium 'Dutch sediment'] Length = 199 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 18/41 (43%) Query: 110 IAQIPGISMKIASRI------------------MTELKGKA 132 + ++PGI K A R+ + ELK + Sbjct: 15 LVRLPGIGPKTAQRLTFHLLKAGREEAIALAQAIIELKDRI 55 >gi|257453792|ref|ZP_05619070.1| radical SAM [Enhydrobacter aerosaccus SK60] gi|257448719|gb|EEV23684.1| radical SAM [Enhydrobacter aerosaccus SK60] Length = 418 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 20/111 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDLDRQW-----FMLLQ 76 V Y Y P+ + + L +G + E + +R +GF + + F+ L Sbjct: 252 VYYSGYVPMLSDNRLPAMGTPVPMVRENRLYQADWLMRFYGF--EAEEILPDDHPFLDL- 308 Query: 77 SVQGVGARVAMGV--LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++A + S I K+I +IPGI + A +I+ Sbjct: 309 ---DCDPKLAWAIRNKSHFPVN-----IQTAPYKMIVRIPGIGTRTAKKIV 351 >gi|256003597|ref|ZP_05428586.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360] gi|281416676|ref|ZP_06247696.1| helicase, RecD/TraA family [Clostridium thermocellum JW20] gi|255992388|gb|EEU02481.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360] gi|281408078|gb|EFB38336.1| helicase, RecD/TraA family [Clostridium thermocellum JW20] Length = 713 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++G+G A ++ + +I + + ++PGI K I Sbjct: 90 IKGIGPVNAKRIVKVFKEDTIR--VIEEEPDRLIEVPGIGKKRVEMI 134 >gi|28572624|ref|NP_789404.1| excinuclease ABC subunit C [Tropheryma whipplei TW08/27] gi|81630094|sp|Q83NI9|UVRC_TROW8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|28410756|emb|CAD67142.1| excinuclease ABC subunit C [Tropheryma whipplei TW08/27] Length = 607 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 46 TLFVETHMRQDQIRLFGFLSDLD---RQWFML--LQSVQGVGARVAMGVLSRITA-TELV 99 +LF+ +R + R F R+ ++ L + G+G + M +L R ++ E+ Sbjct: 520 SLFLLQKIRDESHR---FALKQQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIR 576 Query: 100 ESIILQNSKVIAQIPGISMKIASRI 124 ++ +++ + PG +K A +I Sbjct: 577 QA-SIEDISAL---PGFGVKTAEKI 597 >gi|28493264|ref|NP_787425.1| excinuclease ABC subunit C [Tropheryma whipplei str. Twist] gi|81438052|sp|Q83MY6|UVRC_TROWT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|28476305|gb|AAO44394.1| excinuclease ABC subunit C [Tropheryma whipplei str. Twist] Length = 607 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 46 TLFVETHMRQDQIRLFGFLSDLD---RQWFML--LQSVQGVGARVAMGVLSRITA-TELV 99 +LF+ +R + R F R+ ++ L + G+G + M +L R ++ E+ Sbjct: 520 SLFLLQKIRDESHR---FALKQQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIR 576 Query: 100 ESIILQNSKVIAQIPGISMKIASRI 124 ++ +++ + PG +K A +I Sbjct: 577 QA-SIEDISAL---PGFGVKTAEKI 597 >gi|71065354|ref|YP_264081.1| recombination protein RecR [Psychrobacter arcticus 273-4] gi|123649110|sp|Q4FTL1|RECR_PSYA2 RecName: Full=Recombination protein recR gi|71038339|gb|AAZ18647.1| DNA replication and repair protein RecR [Psychrobacter arcticus 273-4] Length = 197 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 K + +PG+ K A R+ L K + Q + ++ SF+ +A+ Sbjct: 10 VKQLRILPGVGQKSAQRMALHLLTKKRPQGMALAQALDEAMRDIVECQRCHSFSDDAV 67 >gi|302348186|ref|YP_003815824.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15] gi|302328598|gb|ADL18793.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15] Length = 252 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 4/55 (7%) Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 PGI K A RI+ K SL S ++ + + S + + A Sbjct: 173 SFPGIGAKTAERIL----EKFGSLESFFNASLAELASVEGVGESKAARIKELLKA 223 >gi|159035939|ref|YP_001535192.1| RecD/TraA family helicase [Salinispora arenicola CNS-205] gi|157914774|gb|ABV96201.1| helicase, RecD/TraA family [Salinispora arenicola CNS-205] Length = 742 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK-IA 121 V+G+G A +++ L II + + ++PG+ K A Sbjct: 101 VKGIGPVFAERIVAHFGLDTLR--IIEEEPGRLVEVPGLGPKRTA 143 >gi|291537812|emb|CBL10923.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif [Roseburia intestinalis XB6B4] Length = 430 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%) Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + + ++PGI K ASRI+ Sbjct: 320 PKCDWALRHLEYFPVE-----INRADYHTLLRVPGIGAKSASRIV 359 >gi|291537679|emb|CBL10791.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif [Roseburia intestinalis M50/1] Length = 426 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%) Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + + ++PGI K ASRI+ Sbjct: 316 PKCDWALRHLEYFPVE-----INRADYHTLLRVPGIGAKSASRIV 355 >gi|258591348|emb|CBE67647.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [NC10 bacterium 'Dutch sediment'] Length = 433 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + L V GVG ++A ++ + + + Q+ GI K A +++ Sbjct: 370 LRLAEVPGVGEKLADRLIEA-GVDSCRKLADASDE-ALVQVEGIGPKTAQKLI 420 >gi|257413650|ref|ZP_04743697.2| radical SAM domain protein [Roseburia intestinalis L1-82] gi|257202768|gb|EEV01053.1| radical SAM domain protein [Roseburia intestinalis L1-82] Length = 430 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%) Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + + ++PGI K ASRI+ Sbjct: 320 PKCDWALRHLEYFPVE-----INRADYHTLLRVPGIGAKSASRIV 359 >gi|110803510|ref|YP_699450.1| RecD/TraA family helicase [Clostridium perfringens SM101] gi|110684011|gb|ABG87381.1| helicase, RecD/TraA family [Clostridium perfringens SM101] Length = 744 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +QG+G A ++++ L I+ N + + +I GI K I+ Sbjct: 88 IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133 >gi|225568335|ref|ZP_03777360.1| hypothetical protein CLOHYLEM_04412 [Clostridium hylemonae DSM 15053] gi|225162864|gb|EEG75483.1| hypothetical protein CLOHYLEM_04412 [Clostridium hylemonae DSM 15053] Length = 444 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 12/67 (17%) Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 + A+ L + I + K++ ++PGI K A RI+ KA L ++ Sbjct: 317 PKCNWALSHLEQFPVE-----INRADYKMLLRVPGIGYKSAVRIV-----KARRLGTLDF 366 Query: 141 QDMSCVN 147 D+ + Sbjct: 367 HDLKKIG 373 >gi|222100489|ref|YP_002535057.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359] gi|221572879|gb|ACM23691.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359] Length = 181 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 18/126 (14%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L S+ G+G A ++ ++ + + GI K +I K Sbjct: 55 EDLMSIPGIGPVKAQRIVEYRRIRGKFSTVEE-----LTNVSGIGEKTLEKI-----SKY 104 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 +++ V Q S V K + S+ L L Y + A++ ++ + Sbjct: 105 VTVEGVEQPFRSEVTKLNVNTASLEE--------LETLPYIGEAKARAIIEYREEHGPFS 156 Query: 193 DDSQII 198 ++ Sbjct: 157 SPEDLL 162 >gi|168215804|ref|ZP_02641429.1| helicase, RecD/TraA family [Clostridium perfringens NCTC 8239] gi|182382061|gb|EDT79540.1| helicase, RecD/TraA family [Clostridium perfringens NCTC 8239] Length = 744 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +QG+G A ++++ L I+ N + + +I GI K I+ Sbjct: 88 IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133 >gi|169344241|ref|ZP_02865223.1| helicase, RecD/TraA family [Clostridium perfringens C str. JGS1495] gi|169297700|gb|EDS79800.1| helicase, RecD/TraA family [Clostridium perfringens C str. JGS1495] Length = 744 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +QG+G A ++++ L I+ N + + +I GI K I+ Sbjct: 88 IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133 >gi|165933332|ref|YP_001650121.1| 30S ribosomal protein S1 [Rickettsia rickettsii str. Iowa] gi|165908419|gb|ABY72715.1| SSU ribosomal protein S1P [Rickettsia rickettsii str. Iowa] Length = 568 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D +++DV G P L ++GD +F+ET ++ Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIETIEGRNG 93 >gi|218886499|ref|YP_002435820.1| helicase, RecD/TraA family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757453|gb|ACL08352.1| helicase, RecD/TraA family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 728 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++GVG +A ++ ++ + + ++ G+ K RI Sbjct: 97 IKGVGESMAARIVDAFGEDTFR--VLDEEPDRLLRVSGVGGKTLERI 141 >gi|297199818|ref|ZP_06917215.1| exodeoxyribonuclease V, alpha subunit [Streptomyces sviceus ATCC 29083] gi|197710282|gb|EDY54316.1| exodeoxyribonuclease V, alpha subunit [Streptomyces sviceus ATCC 29083] Length = 750 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A + L II + K + ++PG+ K +I Sbjct: 104 VKGIGPVFADRITQHFGIDTLK--IIEEEPKRLVEVPGLGPKRTKKI 148 >gi|125975668|ref|YP_001039578.1| RecD/TraA family helicase [Clostridium thermocellum ATCC 27405] gi|125715893|gb|ABN54385.1| helicase, RecD/TraA family [Clostridium thermocellum ATCC 27405] Length = 710 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++G+G A ++ + +I + + ++PGI K I Sbjct: 87 IKGIGPVNAKRIVKVFKEDTIR--VIEEEPDRLIEVPGIGKKRVEMI 131 >gi|18311157|ref|NP_563091.1| helicase, RecD/TraA family [Clostridium perfringens str. 13] gi|168213721|ref|ZP_02639346.1| helicase, RecD/TraA family [Clostridium perfringens CPE str. F4969] gi|182623921|ref|ZP_02951709.1| helicase, RecD/TraA family [Clostridium perfringens D str. JGS1721] gi|18145840|dbj|BAB81881.1| exodeoxyribonuclease V alpha subunit [Clostridium perfringens str. 13] gi|170714837|gb|EDT27019.1| helicase, RecD/TraA family [Clostridium perfringens CPE str. F4969] gi|177910814|gb|EDT73168.1| helicase, RecD/TraA family [Clostridium perfringens D str. JGS1721] Length = 744 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +QG+G A ++++ L I+ N + + +I GI K I+ Sbjct: 88 IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133 >gi|302343283|ref|YP_003807812.1| helicase, RecD/TraA family [Desulfarculus baarsii DSM 2075] gi|301639896|gb|ADK85218.1| helicase, RecD/TraA family [Desulfarculus baarsii DSM 2075] Length = 720 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+GVG +A ++ + + + + + + + +PG+ K A+ I Sbjct: 95 VKGVGPVMAGRIVDVLGEGAIEKIV--NDPRSLTAVPGVGAKRAASI 139 >gi|33240404|ref|NP_875346.1| excinuclease ABC subunit C [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664511|sp|Q7VBY8|UVRC_PROMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|33237931|gb|AAP99998.1| Nuclease subunit of the excinuclease complex [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 640 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G + +L + V++I + + IA PG+ ++A I Sbjct: 587 ELTEIPGIGPKRIKALLLHFNS---VQAIKMARKEEIASAPGVGRELAEHI 634 >gi|168205588|ref|ZP_02631593.1| helicase, RecD/TraA family [Clostridium perfringens E str. JGS1987] gi|170662877|gb|EDT15560.1| helicase, RecD/TraA family [Clostridium perfringens E str. JGS1987] Length = 744 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +QG+G A ++++ L I+ N + + +I GI K I+ Sbjct: 88 IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133 >gi|110597593|ref|ZP_01385878.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM 13031] gi|110340713|gb|EAT59190.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM 13031] Length = 375 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Query: 68 DRQWFML-LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 ++ +L L + G+G +++ + +++++ + + + IPGI +A +I Sbjct: 2 EKSMLLLALTLIPGIGPSRIKALINHLPDINDVLQA----DVEALKTIPGIGEPLARQI 56 >gi|110800894|ref|YP_696854.1| RecD/TraA family helicase [Clostridium perfringens ATCC 13124] gi|168210105|ref|ZP_02635730.1| helicase, RecD/TraA family [Clostridium perfringens B str. ATCC 3626] gi|110675541|gb|ABG84528.1| helicase, RecD/TraA family [Clostridium perfringens ATCC 13124] gi|170711774|gb|EDT23956.1| helicase, RecD/TraA family [Clostridium perfringens B str. ATCC 3626] Length = 744 Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +QG+G A ++++ L I+ N + + +I GI K I+ Sbjct: 88 IQGIGPVTAKKIVNKFGEDTLN--ILDNNIERLKEIEGIGKKKLETII 133 >gi|89890633|ref|ZP_01202143.1| recombination DNA repair protein RecR [Flavobacteria bacterium BBFL7] gi|89517548|gb|EAS20205.1| recombination DNA repair protein RecR [Flavobacteria bacterium BBFL7] Length = 205 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 26/70 (37%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 I+ + ++Q+PGI + A R++ L P+ Sbjct: 7 ILEEAVNQVSQLPGIGKRTALRLVLHL-------------------------MRQPASQT 41 Query: 162 NAIS-ALVNL 170 +A+S AL NL Sbjct: 42 DALSQALTNL 51 >gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091] gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091] Length = 752 Score = 38.5 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + ++Q F+ +S+ G+G A +L V++I+ + + + GI K A+ I Sbjct: 687 TLPEQQLFIT-ESLPGIGPVSAKNLLRHFKN---VKNIVNASKNELKDVEGIGEKTATNI 742 Query: 125 M 125 + Sbjct: 743 I 743 >gi|320352593|ref|YP_004193932.1| helicase, RecD/TraA family [Desulfobulbus propionicus DSM 2032] gi|320121095|gb|ADW16641.1| helicase, RecD/TraA family [Desulfobulbus propionicus DSM 2032] Length = 832 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++GVG + A +++ L ++ + + ++PGI+ K I Sbjct: 103 IKGVGPKTAKRIVAHFGEQTL--AVFEGEKERLLEVPGIARKKLEMI 147 >gi|307323442|ref|ZP_07602652.1| PHP domain protein [Streptomyces violaceusniger Tu 4113] gi|306890931|gb|EFN21907.1| PHP domain protein [Streptomyces violaceusniger Tu 4113] Length = 345 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 84 RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE-LKGKAIS 134 R A VL+ + E+ + + G+ K A ++ E LKG+ Sbjct: 28 RTAQAVLAGLDPQEVERRAANG---TLRSLKGLGPKTAQ-VVQEALKGQVPG 75 >gi|288572814|ref|ZP_06391171.1| competence protein ComEA helix-hairpin-helix repeat protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568555|gb|EFC90112.1| competence protein ComEA helix-hairpin-helix repeat protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 229 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+++ G+G + A +LS S+ + ++ GI K Sbjct: 176 EELETLPGIGPKTAAAILSYREKIGPFRSVDE-----LTKVKGIGPK 217 >gi|289522266|ref|ZP_06439120.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504102|gb|EFD25266.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 390 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 13/106 (12%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQG-V 81 V Y Y P+ L + + L + IR +GF + F +++ + Sbjct: 236 VYYSAYIPVNP-GVLPDVTNPPLLREHRLYQADWLIRFYGFKVE---DIFQGTENLSNEM 291 Query: 82 GARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++ A+ + I + + +PGI K A +I+ Sbjct: 292 DPKMLWALRNMHLFPVD-----IKRAPYESLILVPGIGPKTAKKII 332 >gi|262198238|ref|YP_003269447.1| excinuclease ABC, C subunit [Haliangium ochraceum DSM 14365] gi|262081585|gb|ACY17554.1| excinuclease ABC, C subunit [Haliangium ochraceum DSM 14365] Length = 689 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 12/86 (13%) Query: 43 DFCTLFVETHMRQDQIRLFGFLSD--LDRQ----WFMLLQSVQGVGARVAMGVLSRITAT 96 + L++ + +R + R F + +R+ L + G+GA+ +L + + Sbjct: 559 NTAELYLLSRVRDEAHR---FANTFHRERRNRTALRSSLDDIPGIGAKRRRALLRELGS- 614 Query: 97 ELVESIILQNSKVIAQIPGISMKIAS 122 +++I + + ++ + G+ K A Sbjct: 615 --LKAIKQASLEELSAVSGMGRKAAE 638 >gi|93005630|ref|YP_580067.1| recombination protein RecR [Psychrobacter cryohalolentis K5] gi|122415701|sp|Q1QCM0|RECR_PSYCK RecName: Full=Recombination protein recR gi|92393308|gb|ABE74583.1| DNA replication and repair protein RecR [Psychrobacter cryohalolentis K5] Length = 197 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 K + +PG+ K A R+ L K + Q + ++ SF+ A+ Sbjct: 10 VKQLRILPGVGQKSAQRMALHLLTKKRPQGMALAQALDEAMRDIVECQRCHSFSDEAV 67 >gi|297205884|ref|ZP_06923279.1| S1 RNA binding domain protein [Lactobacillus jensenii JV-V16] gi|297149010|gb|EFH29308.1| S1 RNA binding domain protein [Lactobacillus jensenii JV-V16] Length = 292 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 1 MIGKI-KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50 M+G I KG + ++ + V GV Y + T + ++GD F+ Sbjct: 1 MLGTIQKGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIY 51 >gi|194333502|ref|YP_002015362.1| helicase, RecD/TraA family [Prosthecochloris aestuarii DSM 271] gi|194311320|gb|ACF45715.1| helicase, RecD/TraA family [Prosthecochloris aestuarii DSM 271] Length = 728 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 18/141 (12%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V+G+G+ A ++ V S+I ++ + + ++PGI K +++ E + ++ Sbjct: 99 VRGIGSHFARTLVRAFGPE--VFSVIEKDPERMLELPGIGKKR-MQMVVEAWDEQKAVRD 155 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISA-------LV----NLGYGQDQATTAVVSVLK 186 ++ S + ++ AI LV +G+ A + S L Sbjct: 156 IMVFLQSHGVGTARAVRIYKTYGDQAIQIVSRNPYRLVLDIQGIGFRTADA---IASTLG 212 Query: 187 KEKNIADDSQI-IRLALRAIS 206 E N +Q IR L +S Sbjct: 213 IEPNSLVRAQAGIRHVLVELS 233 >gi|315146726|gb|EFT90742.1| comEA protein [Enterococcus faecalis TX4244] Length = 225 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + + GI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 217 >gi|37523068|ref|NP_926445.1| recombination protein [Gloeobacter violaceus PCC 7421] gi|73621488|sp|Q7NFM5|RECR_GLOVI RecName: Full=Recombination protein recR gi|35214071|dbj|BAC91440.1| recombination protein [Gloeobacter violaceus PCC 7421] Length = 197 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 + + ++PGI K A R+ L + S + + Q + ++ Sbjct: 10 IEHLQRLPGIGPKTAQRLAFHLLRRPKSEALQLAQALVEATEQ 52 >gi|62185098|ref|YP_219883.1| recombination protein RecR [Chlamydophila abortus S26/3] gi|73621477|sp|Q5L609|RECR_CHLAB RecName: Full=Recombination protein recR gi|62148165|emb|CAH63922.1| recombination protein [Chlamydophila abortus S26/3] Length = 200 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSC 145 ++ ++PGI K A ++ EL K + S+ + + Sbjct: 12 ISLLRKLPGIGFKTAEKLAFELLDWDKDQLESMGKAFSELSAA 54 >gi|282857765|ref|ZP_06266974.1| excinuclease ABC, C subunit [Pyramidobacter piscolens W5455] gi|282584435|gb|EFB89794.1| excinuclease ABC, C subunit [Pyramidobacter piscolens W5455] Length = 575 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L+ V G+G A +LS + + + ++ + + + PGI A++I+ L Sbjct: 432 LEDVPGIGKHKAALLLSTFGSVQRIAALSAEE---LQKAPGIGPVQAAKILGFLTETPEP 488 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFA 160 + ++ + V E+ P A Sbjct: 489 EAPETKKTVELVRAERPPQAVAPETA 514 >gi|269926190|ref|YP_003322813.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269789850|gb|ACZ41991.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 584 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 6/60 (10%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L V +G + + L + L +I I ++ G+ K RI+ LK Sbjct: 102 RELLQVPDLGPKRVKLLWGELKVGSLDALELAIEDG---RIYKVKGLGPKAIERIIEGLK 158 >gi|26990793|ref|NP_746218.1| excinuclease ABC subunit C [Pseudomonas putida KT2440] gi|32130289|sp|Q88FJ7|UVRC_PSEPK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|24985797|gb|AAN69682.1|AE016604_4 excinuclease ABC, C subunit [Pseudomonas putida KT2440] Length = 607 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%) Query: 42 GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94 GD L + +R + R F R + S V GVG + +L Sbjct: 518 GDSSALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 574 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRI 124 EL + I + IA+ PGIS K+A I Sbjct: 575 LQELNRASIDE----IAKAPGISKKLAESI 600 >gi|194333788|ref|YP_002015648.1| PHP domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311606|gb|ACF46001.1| PHP domain protein [Prosthecochloris aestuarii DSM 271] Length = 574 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 13/138 (9%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQSVQGVGARVAMGVLS 91 L+ L IG + + + +R FL L++ F L + G+G R + Sbjct: 56 LTRLPGIGRDLSKKILEIVETGHLR---FLDTLEKNAHASFSELMEIPGLGPRKVKALYD 112 Query: 92 RIT---ATELVESIILQNSKVIAQIPGISMKIASRIMTEL-KGKAISLSSVVQQDMSCVN 147 + EL E+ ++A G K I+ E+ + K S Q M Sbjct: 113 ALDIRNIEELEEAAEQGRIALVA---GFGKKSQQNILKEIVRRKERSRRITYQAAMFAAE 169 Query: 148 KEQAHICSMPSFAINAIS 165 +++ + AI+ Sbjct: 170 PLLSYLRACDDITQVAIA 187 >gi|28493351|ref|NP_787512.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist] gi|28572539|ref|NP_789319.1| DNA uptake protein [Tropheryma whipplei TW08/27] gi|28410671|emb|CAD67057.1| putative DNA uptake protein [Tropheryma whipplei TW08/27] gi|28476392|gb|AAO44481.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist] Length = 193 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 I +++ + I GI A RI+ + + K Sbjct: 135 INTADAQRLQSIKGIGKATAKRII-DWRNKHGPF 167 >gi|257419902|ref|ZP_05596896.1| competence protein comEA [Enterococcus faecalis T11] gi|257161730|gb|EEU91690.1| competence protein comEA [Enterococcus faecalis T11] Length = 225 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + + GI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 217 >gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC 3626] gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC 3626] Length = 662 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149 +I + IP + +K A ++ E KA V QD+ + Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554 Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177 + I+ L++LG Y + + Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586 >gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13] gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13] Length = 665 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 395 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 446 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 447 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 497 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149 +I + IP + +K A ++ E KA V QD+ + Sbjct: 498 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 557 Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177 + I+ L++LG Y + + Sbjct: 558 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 589 >gi|329942834|ref|ZP_08291613.1| recombination protein RecR [Chlamydophila psittaci Cal10] gi|332287427|ref|YP_004422328.1| recombination protein RecR [Chlamydophila psittaci 6BC] gi|313848007|emb|CBY17004.1| recombination protein [Chlamydophila psittaci RD1] gi|325506466|gb|ADZ18104.1| recombination protein RecR [Chlamydophila psittaci 6BC] gi|328815094|gb|EGF85083.1| recombination protein RecR [Chlamydophila psittaci Cal10] gi|328914675|gb|AEB55508.1| recombination protein RecR [Chlamydophila psittaci 6BC] Length = 200 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 4/43 (9%) Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSC 145 + ++PGI K A ++ EL K + S+ + + Sbjct: 12 ISFLRKLPGIGFKTAEKLAFELLDWDKDQLESMGKAFSELSAA 54 >gi|300867805|ref|ZP_07112448.1| recombination protein RecR [Oscillatoria sp. PCC 6506] gi|300334222|emb|CBN57620.1| recombination protein RecR [Oscillatoria sp. PCC 6506] Length = 197 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 6/20 (30%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PGI K A R+ Sbjct: 10 IEQLQRLPGIGPKTAQRLAL 29 >gi|295103457|emb|CBL01001.1| Excinuclease ABC subunit C [Faecalibacterium prausnitzii SL3/3] Length = 617 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 12/110 (10%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 ++D G I T + + I D F + +Q + + Sbjct: 512 TRAIVDSDGREIAINMNRGTFTFITAIQDETHRFANAYRKQ---------QMKQKSYSST 562 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V GVG + A +L++ + V ++ + PG+ ++A I Sbjct: 563 LTEVPGVGPKTAKALLTQFKS---VGAVKDATPDQLENTPGVGRQLAQTI 609 >gi|292492317|ref|YP_003527756.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4] gi|291580912|gb|ADE15369.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4] Length = 236 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 LLQ + G+G A +L+ + VE+++ + + + +PGI ++A Sbjct: 170 LLQGLPGIGPERARQLLAHFGS---VEAVLNAHLEELMTVPGIGKEVA 214 >gi|254514446|ref|ZP_05126507.1| excinuclease ABC, C subunit [gamma proteobacterium NOR5-3] gi|219676689|gb|EED33054.1| excinuclease ABC, C subunit [gamma proteobacterium NOR5-3] Length = 615 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 24/122 (19%) Query: 19 IDVQGV--------CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL------ 64 I+V GV + + L D L + +R + R F Sbjct: 493 IEVVGVAKGTTRKAGFETLILGDSGRELQLPSDNPALHLIQQIRDEAHR---FAITGHRN 549 Query: 65 --SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 RQ L+S+ GVGA+ +L + ++ + + + +IPGIS IA Sbjct: 550 RRDKQRRQ--SSLESIAGVGAKRRRELLRHFGSAG---AVENASVEELRKIPGISANIAQ 604 Query: 123 RI 124 I Sbjct: 605 TI 606 >gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 662 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149 +I + IP + +K A ++ E KA V QD+ + Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554 Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177 + I+ L++LG Y + + Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586 >gi|148378173|ref|YP_001252714.1| helicase, RecD/TraA family [Clostridium botulinum A str. ATCC 3502] gi|153932456|ref|YP_001382573.1| RecD/TraA family helicase [Clostridium botulinum A str. ATCC 19397] gi|153936042|ref|YP_001386126.1| RecD/TraA family helicase [Clostridium botulinum A str. Hall] gi|148287657|emb|CAL81722.1| putative DNA-interacting protein [Clostridium botulinum A str. ATCC 3502] gi|152928500|gb|ABS34000.1| helicase, RecD/TraA family [Clostridium botulinum A str. ATCC 19397] gi|152931956|gb|ABS37455.1| helicase, RecD/TraA family [Clostridium botulinum A str. Hall] Length = 744 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 + G+G A ++ + L I+ N + + +I GI K Sbjct: 88 ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTEIEGIGKKKIE 130 >gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124] gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124] Length = 662 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149 +I + IP + +K A ++ E KA V QD+ + Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554 Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177 + I+ L++LG Y + + Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586 >gi|148547004|ref|YP_001267106.1| excinuclease ABC subunit C [Pseudomonas putida F1] gi|189038076|sp|A5W1B2|UVRC_PSEP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|148511062|gb|ABQ77922.1| Excinuclease ABC subunit C [Pseudomonas putida F1] Length = 607 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%) Query: 42 GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94 GD L + +R + R F R + S V GVG + +L Sbjct: 518 GDSSALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 574 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRI 124 EL + I + IA+ PGIS K+A I Sbjct: 575 LQELNRASIDE----IAKAPGISKKLAESI 600 >gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065] Length = 664 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 27/172 (15%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y YC TLSC ++ V R+ + + GF Q F L ++ + Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468 Query: 82 G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127 ++ L + + L+++I + IP + K A+ ++ + Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQ 174 K ++ ++Q + + + S+ F + I L+NLG Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKP 580 >gi|313498052|gb|ADR59418.1| UvrC [Pseudomonas putida BIRD-1] Length = 607 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%) Query: 42 GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94 GD L + +R + R F R + S V GVG + +L Sbjct: 518 GDSSALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 574 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRI 124 EL + I + IA+ PGIS K+A I Sbjct: 575 LQELNRASIDE----IAKAPGISKKLAESI 600 >gi|104782488|ref|YP_608986.1| excinuclease ABC subunit C [Pseudomonas entomophila L48] gi|122402746|sp|Q1I833|UVRC_PSEE4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|95111475|emb|CAK16195.1| excinuclease ABC subunit C [Pseudomonas entomophila L48] Length = 607 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG + +L EL + I + IA+ PGIS K+A I Sbjct: 554 LEDVAGVGPKRRRDLLKHFGGLQELNRASIDE----IAKAPGISKKLAESI 600 >gi|239979547|ref|ZP_04702071.1| putative exodeoxyribonuclease V [Streptomyces albus J1074] gi|291451415|ref|ZP_06590805.1| exodeoxyribonuclease V [Streptomyces albus J1074] gi|291354364|gb|EFE81266.1| exodeoxyribonuclease V [Streptomyces albus J1074] Length = 752 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G R+A + L +I ++K + ++PG+ K Sbjct: 103 IKGIGPRIADRITEHFGVDTLD--VIETDAKRLVEVPGLGPK 142 >gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto] gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto] Length = 664 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 27/172 (15%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y YC TLSC ++ V R+ + + GF Q F L ++ + Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468 Query: 82 G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127 ++ L + + L+++I + IP + K A+ ++ + Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQ 174 K ++ ++Q + + + S+ F + I L+NLG Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKP 580 >gi|218135320|ref|ZP_03464124.1| hypothetical protein BACPEC_03225 [Bacteroides pectinophilus ATCC 43243] gi|217990705|gb|EEC56716.1| hypothetical protein BACPEC_03225 [Bacteroides pectinophilus ATCC 43243] Length = 757 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 66 DLDRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 + ++ L S ++G+G + A +++ A II + + +A+I GISMK A Sbjct: 94 EDEKAVLKYLGSGAIRGIGEKTAQNIVNYFGADTFR--IIEEEPERLAEIKGISMKKA 149 >gi|323706335|ref|ZP_08117900.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534297|gb|EGB24083.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 424 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 19/110 (17%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGF-----LSDLDRQWFMLLQS 77 V Y Y P+ S + K+ L + +R + F L++ + + Sbjct: 250 VYYSAYIPVSDDSNISKVTSPPLLREHRLYQADWLLRYYNFKADELLTEEEPNF-----D 304 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 V + ++ AM L+ + + ++ ++PGI ++ A RI+ Sbjct: 305 VS-LDPKINWAMKNLNLFPVE-----VNTADYNMLLRVPGIGVRTAKRIV 348 >gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721] gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721] Length = 662 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149 +I + IP + +K A ++ E KA V QD+ + Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554 Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177 + I+ L++LG Y + + Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586 >gi|51891153|ref|YP_073844.1| recombination protein RecR [Symbiobacterium thermophilum IAM 14863] gi|73621522|sp|Q67TJ3|RECR_SYMTH RecName: Full=Recombination protein recR gi|51854842|dbj|BAD39000.1| recombination protein [Symbiobacterium thermophilum IAM 14863] Length = 198 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 + + ++PGI K A R+ Sbjct: 11 IEELTKLPGIGPKTAQRL 28 >gi|319941052|ref|ZP_08015388.1| UvrABC system protein C [Sutterella wadsworthensis 3_1_45B] gi|319805409|gb|EFW02211.1| UvrABC system protein C [Sutterella wadsworthensis 3_1_45B] Length = 686 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ + GVG + +L +L + ++ Q+PGIS K+A +I Sbjct: 615 KLEDLSGVGPKRRAKLLGHFGGMKQLKNA-SAEDIA---QVPGISRKLAEQI 662 >gi|157373515|ref|YP_001472115.1| ERCC4 domain-containing protein [Shewanella sediminis HAW-EB3] gi|157315889|gb|ABV34987.1| ERCC4 domain protein [Shewanella sediminis HAW-EB3] Length = 212 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 29 YCP-IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL--SDLDRQWFMLLQSVQGVGARV 85 P +R+LS + + R+ ++L G +RQ F+ LQS+ VG R+ Sbjct: 112 NIPILRSLSQYESAKILYFCATQLNSRETGLKLNGRKPKRRKNRQLFI-LQSLPEVGPRL 170 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 A +L + VE++I ++ + ++ GI + A +I Sbjct: 171 ARRLLKHFDS---VEAVITASTDELIKVEGIGQERARKI 206 >gi|307277117|ref|ZP_07558221.1| comEA protein [Enterococcus faecalis TX2134] gi|306506047|gb|EFM75213.1| comEA protein [Enterococcus faecalis TX2134] Length = 225 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + + GI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 217 >gi|294055836|ref|YP_003549494.1| excinuclease ABC C subunit domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615169|gb|ADE55324.1| excinuclease ABC C subunit domain protein [Coraliomargarita akajimensis DSM 45221] Length = 490 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125 L +G+G M +L + +L ++ +++ I Q+ GI K A ++ Sbjct: 437 LDDFKGLGPTKRMALLKHFGSLDKLRKA----DAEAITQVEGIGPKTAKGLV 484 >gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC 15579] gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC 15579] Length = 664 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 34/212 (16%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y YC TLSC ++ V R+ + + GF Q F L ++ + Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSEKTAEQLFEKL-DIKSI 468 Query: 82 G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127 ++ L + + L+++I + IP + K A+ ++ + Sbjct: 469 ADLYKIKKEELLTLDKFGDKKSQNLIDAIENSKNCDLPSFIYALGIPNVGKKTANDLVMK 528 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQDQATTAVV 182 K S+ +++ + + + S+ F + I L+NLG + Sbjct: 529 FKTLENIESATIEELVEVPDVGEIVAKSVYDFFKDEKIINNIEELLNLGVKPYYEEEIID 588 Query: 183 SVLKKEKNIADDSQI-------IRLALRAISC 207 K I + I+ L+++ Sbjct: 589 ENPFMGKTIVVTGSLNNYSRGEIKDKLQSLGA 620 >gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969] gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969] Length = 662 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149 +I + IP + +K A ++ E KA V QD+ + Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554 Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177 + I+ L++LG Y + + Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586 >gi|218437593|ref|YP_002375922.1| recombination protein RecR [Cyanothece sp. PCC 7424] gi|259563689|sp|B7KEM9|RECR_CYAP7 RecName: Full=Recombination protein recR gi|218170321|gb|ACK69054.1| recombination protein RecR [Cyanothece sp. PCC 7424] Length = 199 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 10 IEQLQRLPGVGPKTAQRLAL 29 >gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987] gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987] Length = 662 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149 +I + IP + +K A ++ E KA V QD+ + Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554 Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177 + I+ L++LG Y + + Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586 >gi|170722539|ref|YP_001750227.1| excinuclease ABC subunit C [Pseudomonas putida W619] gi|229557935|sp|B1JB85|UVRC_PSEPW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169760542|gb|ACA73858.1| excinuclease ABC, C subunit [Pseudomonas putida W619] Length = 607 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG + +L EL + I + IA+ PGIS K+A I Sbjct: 554 LEDVAGVGPKRRRDLLKHFGGLQELNRASIDE----IAKAPGISKKLAESI 600 >gi|53804040|ref|YP_114124.1| excinuclease ABC subunit C [Methylococcus capsulatus str. Bath] gi|53757801|gb|AAU92092.1| excinuclease ABC, C subunit [Methylococcus capsulatus str. Bath] Length = 626 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 49/160 (30%) Query: 4 KIK-GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG---------------KIGDFCTL 47 +I+ G +E D + ID G I+ RTL+ LG K G Sbjct: 468 RIRAGEVEA--PDILFID-GGKG-QIHAAARTLAELGVENIRIIGIAKGPDRKPGMETLF 523 Query: 48 FV-----------------ETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQGVGAR 84 H+R + R F RQ LQ++ G+G + Sbjct: 524 QTGCSDPIVVKPDNPGSLLIQHIRDEAHR---FAITGHRQRRAKTVTRSPLQAIAGLGPK 580 Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +L + L + I + + ++ + GI+ ++A RI Sbjct: 581 RRQRLLRQFG--GLRQ-ISRADVEALSSVEGINRQLAQRI 617 >gi|86133950|ref|ZP_01052532.1| recombination protein RecR [Polaribacter sp. MED152] gi|85820813|gb|EAQ41960.1| recombination protein RecR [Polaribacter sp. MED152] Length = 205 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 16/32 (50%) Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + I+ ++++PGI + A R++ L Sbjct: 2 DFSSKILENAVNEVSRLPGIGKRTALRLVLHL 33 >gi|78485489|ref|YP_391414.1| excinuclease ABC, C subunit [Thiomicrospira crunogena XCL-2] gi|119367857|sp|Q31GI3|UVRC_THICR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78363775|gb|ABB41740.1| Excinuclease ABC subunit C [Thiomicrospira crunogena XCL-2] Length = 613 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 14/107 (13%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL-----SDLDR-QWFMLLQSV 78 I + D L + ++R + R F S + Q L+ + Sbjct: 506 GLEILYTPFNEEGIDLEADDIALHLLNYIRDEAHR---FAITSHRSRRQKAQTHSRLEDI 562 Query: 79 QGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 GVGA+ +L+ TE+ + + + + ++PGIS +IA I Sbjct: 563 PGVGAKTRHKLLTHFGGLTEVKNAAVSE----LQKVPGISARIAQTI 605 >gi|88855053|ref|ZP_01129718.1| Competence protein ComEA helix-hairpin-helix region [marine actinobacterium PHSC20C1] gi|88815581|gb|EAR25438.1| Competence protein ComEA helix-hairpin-helix region [marine actinobacterium PHSC20C1] Length = 196 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 13/72 (18%) Query: 62 GF---LSDLDRQWFMLLQ-----SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 GF + + LL SV VGA+ A +S + ++ + + Sbjct: 95 GFTESANHDELNLARLLTDGEQFSVPEVGAKSAEAAVSDSRVN-----LNTADAAALDTL 149 Query: 114 PGISMKIASRIM 125 P I +A RI+ Sbjct: 150 PRIGPAMAKRIL 161 >gi|295695298|ref|YP_003588536.1| excinuclease ABC, C subunit [Bacillus tusciae DSM 2912] gi|295410900|gb|ADG05392.1| excinuclease ABC, C subunit [Bacillus tusciae DSM 2912] Length = 591 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 L +I + F T RQ + R +L + G+G + +L Sbjct: 510 FYLLQRIQEEVHRFAITFHRQ---------TRGKRVMHSVLDDIPGIGEKRKRKLLQHFG 560 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 + VE+I + + Q GI ++A +I+ LK Sbjct: 561 S---VEAIRQASLEEFRQA-GIGDRLAEQILEALK 591 >gi|78187321|ref|YP_375364.1| helicase RecD/TraA [Chlorobium luteolum DSM 273] gi|78167223|gb|ABB24321.1| Helicase RecD/TraA [Chlorobium luteolum DSM 273] Length = 739 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 +R + GVG +A ++S II + + + IPGI K ++ E Sbjct: 102 ERYLASGMLK--GVGPHLASLMMSAWGTDVFQ--IIETDPERLRDIPGIGPKK-QALIVE 156 >gi|310658920|ref|YP_003936641.1| radical sam domain-containing protein [Clostridium sticklandii DSM 519] gi|308825698|emb|CBH21736.1| Radical SAM domain protein [Clostridium sticklandii] Length = 428 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 20/110 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQ--- 79 V Y Y P+ + L I + L + +R + F + L SV Sbjct: 249 VYYSSYIPVNEDTLLPAIPEPTFLREHRLYQADWLLRFYDFKASE-------LLSVNQNF 301 Query: 80 --GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + + A+ ++ I + K++ ++PGI ++ A RI+ Sbjct: 302 NLALDPKANYALNNMNLFPVN-----IQTASYKLLLRVPGIGVRSAKRIV 346 >gi|295102428|emb|CBK99973.1| Excinuclease ABC subunit C [Faecalibacterium prausnitzii L2-6] Length = 617 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V GVG + A ++++ + V ++ + PG+ ++A I Sbjct: 562 TLTEVPGVGPKTAKALMTQFKS---VGAVKEATPDQLENTPGVGRQMAQTI 609 >gi|295839538|ref|ZP_06826471.1| excinuclease ABC subunit C [Streptomyces sp. SPB74] gi|197696882|gb|EDY43815.1| excinuclease ABC subunit C [Streptomyces sp. SPB74] Length = 818 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 18/94 (19%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L ++ D F T+ R S ++ F L V G+G +L Sbjct: 527 LYLLQRVRDEAHRFAITYQR----------SKRAKR-FRAGPLDEVPGLGQSRKQALLKH 575 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRIM 125 + +L + I Q I ++PGI K A I+ Sbjct: 576 FGSVKKLRAATIEQ----ICEVPGIGRKTAETIL 605 >gi|167034667|ref|YP_001669898.1| excinuclease ABC subunit C [Pseudomonas putida GB-1] gi|166861155|gb|ABY99562.1| excinuclease ABC, C subunit [Pseudomonas putida GB-1] Length = 585 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%) Query: 42 GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFMLLQS---VQGVGARVAMGVLSRIT- 94 GD L + +R + R F R + S V GVG + +L Sbjct: 496 GDSSALHLIQQIRDEAHR---FAITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGG 552 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRI 124 EL + I + IA+ PGIS K+A I Sbjct: 553 LQELNRASIDE----IAKAPGISKKLAESI 578 >gi|218533192|ref|YP_002424008.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4] gi|218525495|gb|ACK86080.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4] Length = 750 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 G+G +A +++ + II + ++ GI K A RI+ Sbjct: 111 GIGPAMAKRIVALFGESTFE--IIEAEPDRLMEVGGIGPKRAERIV 154 >gi|328951740|ref|YP_004369075.1| competence protein ComEA helix-hairpin-helix repeat protein [Marinithermus hydrothermalis DSM 14884] gi|328452064|gb|AEB12965.1| competence protein ComEA helix-hairpin-helix repeat protein [Marinithermus hydrothermalis DSM 14884] Length = 163 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 9/56 (16%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 R L+++ G+G A ++ E + +++ + ++PGI K R+ Sbjct: 111 RATLEELEALPGIGPTKARRIM------EYRPYLRVED---LLRVPGIGEKTLERL 157 >gi|126661189|ref|ZP_01732265.1| Helicase RecD/TraA [Cyanothece sp. CCY0110] gi|126617525|gb|EAZ88318.1| Helicase RecD/TraA [Cyanothece sp. CCY0110] Length = 745 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++GVG A +++ L II + + ++PGI K Sbjct: 103 IRGVGPVTAKRIVAYFQLDTLE--IIENQIERLVEVPGIGKK 142 >gi|312962438|ref|ZP_07776929.1| Recombination protein recR [Pseudomonas fluorescens WH6] gi|311283365|gb|EFQ61955.1| Recombination protein recR [Pseudomonas fluorescens WH6] Length = 206 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 +S ++ I Q + +PG+ K A R+ +L + S + + Q +S + Sbjct: 1 MSDLSPMSFSPLI-RQLIDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMEG 59 Query: 150 QAHICSMPSFAIN 162 H + Sbjct: 60 VGHCRQCRTLTEE 72 >gi|307271557|ref|ZP_07552829.1| comEA protein [Enterococcus faecalis TX0855] gi|306511829|gb|EFM80827.1| comEA protein [Enterococcus faecalis TX0855] gi|315035753|gb|EFT47685.1| comEA protein [Enterococcus faecalis TX0027] Length = 225 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + + GI K R+ Sbjct: 172 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 217 >gi|332980767|ref|YP_004462208.1| DNA replication and repair protein RecR [Mahella australiensis 50-1 BON] gi|332698445|gb|AEE95386.1| DNA replication and repair protein RecR [Mahella australiensis 50-1 BON] Length = 199 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 ++++PGI K A R+ Sbjct: 12 INELSKLPGIGPKTAQRL 29 >gi|256616994|ref|ZP_05473840.1| competence protein CelA [Enterococcus faecalis ATCC 4200] gi|256596521|gb|EEU15697.1| competence protein CelA [Enterococcus faecalis ATCC 4200] Length = 214 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + + GI K R+ Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 206 >gi|313884718|ref|ZP_07818474.1| comEA protein [Eremococcus coleocola ACS-139-V-Col8] gi|312620086|gb|EFR31519.1| comEA protein [Eremococcus coleocola ACS-139-V-Col8] Length = 241 Score = 38.1 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIIL-QNSKVIAQIPGISMKIASRIM 125 LLQ++ +G + A +++ + I Q+ + + Q+PGI K ++ Sbjct: 190 LLQTLPNIGPKKAEAIINY------RQEIGSFQSVEELIQVPGIGKKTLEGLI 236 >gi|269215626|ref|ZP_06159480.1| competence protein [Slackia exigua ATCC 700122] gi|269131113|gb|EEZ62188.1| competence protein [Slackia exigua ATCC 700122] Length = 258 Score = 38.1 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 I + + +IPG+ A R + E + K+ SSV Sbjct: 200 INTADEAALDRIPGVGPATA-RAIVEEREKSGPFSSV 235 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + GVG A ++ + S+ I ++ GI K R+ Sbjct: 208 LDRIPGVGPATARAIVEEREKSGPFSSVDD-----ITRVEGIGKKKLERM 252 >gi|220932909|ref|YP_002509817.1| recombination protein RecR [Halothermothrix orenii H 168] gi|254790771|sp|B8CZX0|RECR_HALOH RecName: Full=Recombination protein recR gi|219994219|gb|ACL70822.1| recombination protein RecR [Halothermothrix orenii H 168] Length = 198 Score = 38.1 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 ++++PGI K A R+ Sbjct: 12 INQLSRLPGIGPKTAQRL 29 >gi|67925673|ref|ZP_00518989.1| Helicase RecD/TraA [Crocosphaera watsonii WH 8501] gi|67852481|gb|EAM47924.1| Helicase RecD/TraA [Crocosphaera watsonii WH 8501] Length = 748 Score = 38.1 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++GVG A +++ L II + ++PGI K I Sbjct: 99 IKGVGPVTAKRIVAHFGLDTLD--IIEYEIGRLVEVPGIGKKRVQMI 143 >gi|221195798|ref|ZP_03568851.1| excinuclease ABC, C subunit [Atopobium rimae ATCC 49626] gi|221184272|gb|EEE16666.1| excinuclease ABC, C subunit [Atopobium rimae ATCC 49626] Length = 646 Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 15/110 (13%) Query: 27 IIYCP-IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQ------ 79 ++ P T L +L++ +R + R F R+ +V Sbjct: 541 EVFVPWDDTPIVLPSG--SASLYLIKQVRDESHR---FAITFHRELRDKAMTVSILDEIP 595 Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 GVG + ++ + + + + + + GIS +A I ELK Sbjct: 596 GVGPKRKKDLMRHFGSFKKLNAASADDIAD---VKGISPALAQTIFDELK 642 >gi|330506342|ref|YP_004382770.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328927150|gb|AEB66952.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 395 Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 24/117 (20%) Query: 49 VETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK 108 + ++ GFLS+ D ++A+ + + + + Sbjct: 299 IHMAFDEN-----GFLSNSD--------------PKLAIARELLDSPVDPNSAAYRE--- 336 Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 + ++PGI + A RI+ L+ + +S + + V K A + + + Sbjct: 337 -LIRVPGIGPRSAKRIIA-LRMRKNIVSKRELEALGVVIKRAAPFLKINGWRDTTLE 391 >gi|225165543|ref|ZP_03727363.1| Exodeoxyribonuclease V [Opitutaceae bacterium TAV2] gi|224800216|gb|EEG18626.1| Exodeoxyribonuclease V [Opitutaceae bacterium TAV2] Length = 759 Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V G+G A ++ ++ ++S + +PGI K AS I Sbjct: 116 VHGIGKAYANKIVDAFGTDTFR--VLSEDSGRLHDVPGIGKKRASAI 160 >gi|327542220|gb|EGF28710.1| DNA polymerase family X protein [Rhodopirellula baltica WH47] Length = 329 Score = 38.1 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +V G+G +++ + + L E + N + ++PGI K Sbjct: 116 TVPGIGPQLSHRIYDHLHIETLPELLRAANDGRLNRVPGIGDK 158 >gi|255658598|ref|ZP_05404007.1| helicase, RecD/TraA family [Mitsuokella multacida DSM 20544] gi|260848963|gb|EEX68970.1| helicase, RecD/TraA family [Mitsuokella multacida DSM 20544] Length = 740 Score = 38.1 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT------ELKG 130 V G+G +A ++ + L ++I Q + ++ GI K +I EL+ Sbjct: 108 VDGIGPALAKRIVQKFGKKTL--TVIEQTPHRLGEVAGIGKKTIEKITASYAAQSELRD 164 >gi|262280261|ref|ZP_06058045.1| DNA-binding protein [Acinetobacter calcoaceticus RUH2202] gi|262258039|gb|EEY76773.1| DNA-binding protein [Acinetobacter calcoaceticus RUH2202] Length = 420 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 15/104 (14%) Query: 29 YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLL-QSVQGV 81 Y PI T + L +G L E + +R +GF + ++ F L V Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFQVNEIVNEK--FPNLDLDVD-- 312 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +++ + + + + ++I ++PGI +K A +I+ Sbjct: 313 -PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352 >gi|160932696|ref|ZP_02080085.1| hypothetical protein CLOLEP_01537 [Clostridium leptum DSM 753] gi|156867770|gb|EDO61142.1| hypothetical protein CLOLEP_01537 [Clostridium leptum DSM 753] Length = 738 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 63 FLSDLDRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F + L S V+G+G +A ++ L ++ + + +A + GIS Sbjct: 76 FQPAGEGAILRYLSSGAVKGIGPVMAARLVDAFGDQTLE--VLENHPERLASVKGISKAK 133 Query: 121 ASRIMTEL 128 A +I +EL Sbjct: 134 AQQIASEL 141 >gi|157375985|ref|YP_001474585.1| recombination protein RecR [Shewanella sediminis HAW-EB3] gi|189029376|sp|A8FX84|RECR_SHESH RecName: Full=Recombination protein recR gi|157318359|gb|ABV37457.1| recombination protein RecR [Shewanella sediminis HAW-EB3] Length = 199 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL++ + +PG+ K A R+ +L + + Q ++ + H Sbjct: 7 VDELIQ--------SLKCLPGVGPKSAQRMAFQLLERDRKAGQTLAQALASAMSDVGHCR 58 Query: 155 SMPSFAIN 162 S +F Sbjct: 59 SCRTFTEE 66 >gi|87307031|ref|ZP_01089177.1| DNA processing chain A [Blastopirellula marina DSM 3645] gi|87290404|gb|EAQ82292.1| DNA processing chain A [Blastopirellula marina DSM 3645] Length = 407 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Query: 78 VQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 V GVG R + +L R T ++ + + + ++ G+ K++ +I Sbjct: 53 VSGVGPRTSQVLLERFGTHAGVLAATRSE----LERVSGVGPKLSQKI 96 >gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3] gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3] Length = 675 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 19/116 (16%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI------- 124 F+ ++ VG A+ + + + +E+I + + ++P + +A + Sbjct: 514 FIFALGIREVGEATALALATYFGS---IEAIRAADLDSLLEVPDVGPVVAQHLRAFFSAQ 570 Query: 125 ----MTE--LKGKAISLSSVVQQDMSCVNKEQAHICS---MPSFAINAISALVNLG 171 + E L + + Q+ + Q + S A AL LG Sbjct: 571 ANQQVLERLLAAGVVWPAVSPAQNAQGPLEGQTWVVSGKLESQSRDEAEEALRALG 626 >gi|172037739|ref|YP_001804240.1| recombination protein RecR [Cyanothece sp. ATCC 51142] gi|171699193|gb|ACB52174.1| recombination protein [Cyanothece sp. ATCC 51142] Length = 202 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 15 IEQLQRLPGVGPKTAQRLAL 34 >gi|220932130|ref|YP_002509038.1| competence protein ComEA helix-hairpin-helix repeat protein [Halothermothrix orenii H 168] gi|219993440|gb|ACL70043.1| competence protein ComEA helix-hairpin-helix repeat protein [Halothermothrix orenii H 168] Length = 245 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 9/60 (15%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 LQ + G+G A ++ + + + GI K + LK K Sbjct: 192 EQLQKLPGIGPSKARSIVKYREENGFFT-----DKAQLLNVSGIGEKTYEK----LKDKV 242 >gi|300860782|ref|ZP_07106869.1| putative ComE operon protein 1 [Enterococcus faecalis TUSoD Ef11] gi|300849821|gb|EFK77571.1| putative ComE operon protein 1 [Enterococcus faecalis TUSoD Ef11] Length = 214 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + + GI K R+ Sbjct: 161 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 206 >gi|156740035|ref|YP_001430164.1| phosphotransferase domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156231363|gb|ABU56146.1| PHP domain protein [Roseiflexus castenholzii DSM 13941] Length = 580 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 11/96 (11%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM---- 125 L V G+G R A + L + EL + +A + G K I+ Sbjct: 95 RELLRVPGIGPRTAGRLYRELGITSLAELKVAAEAG---RLAALKGFGAKTIDSILQGIS 151 Query: 126 -TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA 160 E + + + L+ + + +N +A + ++ A Sbjct: 152 AAERQERRMLLAHAIDSAEALINALRAAVPALSQAA 187 >gi|116494812|ref|YP_806546.1| DNA uptake protein related DNA-binding protein [Lactobacillus casei ATCC 334] gi|116104962|gb|ABJ70104.1| DNA uptake protein related DNA-binding protein [Lactobacillus casei ATCC 334] Length = 223 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%) Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120 LQ++ G+G + A ++S R + ++ + ++ GI K Sbjct: 170 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 211 >gi|227535191|ref|ZP_03965240.1| competence protein EA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187236|gb|EEI67303.1| competence protein EA [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 227 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%) Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120 LQ++ G+G + A ++S R + ++ + ++ GI K Sbjct: 174 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 215 >gi|319891432|ref|YP_004148307.1| Recombination protein RecR [Staphylococcus pseudintermedius HKU10-03] gi|317161128|gb|ADV04671.1| Recombination protein RecR [Staphylococcus pseudintermedius HKU10-03] gi|323465398|gb|ADX77551.1| recombination protein RecR [Staphylococcus pseudintermedius ED99] Length = 198 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRI---MTELK 129 ++PGI K A R+ + ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHVLDMK 36 >gi|297182769|gb|ADI18923.1| recombinational DNA repair protein (recf pathway) [uncultured SAR11 cluster bacterium HF0010_09O16] Length = 203 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Query: 107 SKVIAQIPGISMKIASRIMTEL---KGKAIS 134 K+I+++PG+ K A RI+ +L K + + Sbjct: 11 IKIISKLPGLGPKSAKRIVLKLINNKDELVK 41 >gi|126660894|ref|ZP_01731986.1| Helicase RecD/TraA [Cyanothece sp. CCY0110] gi|126617848|gb|EAZ88625.1| Helicase RecD/TraA [Cyanothece sp. CCY0110] Length = 763 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++GVG A +++ L II + + ++PGI K Sbjct: 122 IRGVGPVTAKRIVAYFQLETLE--IIENQIERLVEVPGIGKK 161 >gi|311898810|dbj|BAJ31218.1| putative helicase RecD/TraA family protein [Kitasatospora setae KM-6054] Length = 732 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G R A ++ R A L +I K + ++PG+ K Sbjct: 93 IKGIGPRFAERIVERFGAETLE--VIENEPKRLIEVPGLGPK 132 >gi|291566399|dbj|BAI88671.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 551 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 L+S+ G+G +A ++ + L + ++ GI K R Sbjct: 501 ELESLPGIGPALAQRIIEARSQQPFTS---LDDV---TRVSGIGPKTIER 544 >gi|284036517|ref|YP_003386447.1| recombination protein RecR [Spirosoma linguale DSM 74] gi|283815810|gb|ADB37648.1| recombination protein RecR [Spirosoma linguale DSM 74] Length = 203 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 19/39 (48%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 ++++PGI K A R++ L + + + Q ++ Sbjct: 12 VNEVSKLPGIGKKTALRLVLHLLKRDEEQTETLAQSLTA 50 >gi|86610315|ref|YP_479077.1| recombination protein RecR [Synechococcus sp. JA-2-3B'a(2-13)] gi|123500273|sp|Q2JH53|RECR_SYNJB RecName: Full=Recombination protein recR gi|86558857|gb|ABD03814.1| recombination protein RecR [Synechococcus sp. JA-2-3B'a(2-13)] Length = 199 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 21/56 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 + + ++PGI K A R+ L + + + + + H +++ Sbjct: 10 IEELQRLPGIGSKTAQRLALHLINRPAGEIEALAKALLEAKQTVRHCSICFNWSAE 65 >gi|73663585|ref|YP_302366.1| recombination protein RecR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123641631|sp|Q49UY9|RECR_STAS1 RecName: Full=Recombination protein recR gi|72496100|dbj|BAE19421.1| recombinational DNA repair protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 198 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRI---MTELK 129 ++PGI K A R+ + ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHVLDMK 36 >gi|325283190|ref|YP_004255731.1| Histidyl-tRNA synthetase [Deinococcus proteolyticus MRP] gi|324314999|gb|ADY26114.1| Histidyl-tRNA synthetase [Deinococcus proteolyticus MRP] Length = 430 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 20/139 (14%) Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS-MKIASRIMTELKGKAISLSS 137 QG+GA+ A+G L + + ++ +PGI RI+ ++ + +S + Sbjct: 283 QGIGAKSALG--GGGRYDGLAQELGAKDE-----VPGIGWAFGIERILLAMEDEGLSFPA 335 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLG----YGQDQATTAVVSVLKKEKN--- 190 V + + H+ + + A A V G + + A A ++ Sbjct: 336 AVGPALYLAALDDEHVALVAALARQARQ--VA-GADFSFRRRGAGQAFKEADRRGARWAA 392 Query: 191 --IADDSQIIRLALRAISC 207 ++++ RL L+ +S Sbjct: 393 VIGSNEAAQQRLTLKNLSS 411 >gi|293384504|ref|ZP_06630375.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] gi|291078160|gb|EFE15524.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] Length = 59 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%) Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + A+ AL LGY + + + D + AL+ + Sbjct: 6 VTTSNQALAEALEALSALGYSDREIKRITKQLEALGETTTDV--YLSNALKFM 56 >gi|226525323|gb|ACO70921.1| pyridoxal phosphate biosynthetic protein PdxA [uncultured Verrucomicrobia bacterium] Length = 334 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 20/132 (15%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA-----SRIM--TELKGKA 132 GVG V + +L+ + ++ +++++A+ + A RI+ E Sbjct: 15 GVGPEVCLQLLANESVHAFATPVVFGDARLLARC----ARQAGLTPPRRIISEIEWAEVC 70 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 +L D+ + E ++ + A GY + ++ + L K+ Sbjct: 71 GTLDEPCVLDLFGFDAESFEPGTVSAKTGAA-------GYRYVE--KSIEAALAKQVAAV 121 Query: 193 DDSQIIRLALRA 204 + + + ALRA Sbjct: 122 ATAPLNKEALRA 133 >gi|257059083|ref|YP_003136971.1| recombination protein RecR [Cyanothece sp. PCC 8802] gi|256589249|gb|ACV00136.1| recombination protein RecR [Cyanothece sp. PCC 8802] Length = 197 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 10 IEQLQRLPGVGPKTAQRLAL 29 >gi|218246033|ref|YP_002371404.1| recombination protein RecR [Cyanothece sp. PCC 8801] gi|254790764|sp|B7K2B2|RECR_CYAP8 RecName: Full=Recombination protein recR gi|218166511|gb|ACK65248.1| recombination protein RecR [Cyanothece sp. PCC 8801] Length = 197 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 10 IEQLQRLPGVGPKTAQRLAL 29 >gi|193213501|ref|YP_001999454.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193086978|gb|ACF12254.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327] Length = 417 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 13/107 (12%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVG 82 V Y + P+ + L + L + +R +GF S + +L + Sbjct: 250 VYYSAFVPVNEDNRLPVLSAPPLLREHRLYQADWLLRFYGF-SPEE----ILSDDAPNLD 304 Query: 83 ----ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A + I + + ++PGI + A RI+ Sbjct: 305 ESFDPKTAWALRH---PEFFPVEINRADYATLLRVPGIGVVSAKRII 348 >gi|86606039|ref|YP_474802.1| recombination protein RecR [Synechococcus sp. JA-3-3Ab] gi|123506557|sp|Q2JUS3|RECR_SYNJA RecName: Full=Recombination protein recR gi|86554581|gb|ABC99539.1| recombination protein RecR [Synechococcus sp. JA-3-3Ab] Length = 199 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 21/56 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 + + ++PGI K A R+ L + + + + + H +++ Sbjct: 10 IEELQRLPGIGSKTAQRLALHLLNRPAGEVEALAKALLEAKQTVKHCSICFNWSAE 65 >gi|291560255|emb|CBL39055.1| helicase, putative, RecD/TraA family [butyrate-producing bacterium SSC/2] Length = 776 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 ++GVG +A + + +I + + +A++ GIS K A I E K Sbjct: 109 IKGVGPALAKRITKKFKMDTFR--VIEEEPERLAEVKGISEKKARAIAVEFSEK 160 >gi|187918328|ref|YP_001883891.1| recombination protein RecR [Borrelia hermsii DAH] gi|119861176|gb|AAX16971.1| recombination protein RecR [Borrelia hermsii DAH] Length = 194 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%) Query: 101 SIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 II +++++PGI K ASR++ ++ K + + Q +S ++ Sbjct: 1 MIIQDLIVLVSKLPGIGKKTASRMVYDILYKGEEYAKNLGQILSNLHSS 49 >gi|294817096|ref|ZP_06775738.1| WD-40 repeat-containing protein [Streptomyces clavuligerus ATCC 27064] gi|294321911|gb|EFG04046.1| WD-40 repeat-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 1178 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 65/209 (31%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P RT L G L V+ ++ L +R F+ L + G G R + V Sbjct: 109 APFRTHQALLTPG--ALLLVDQF--EEVFTLC--RDPAERDAFIGLLT--GPGRRAVLAV 160 Query: 90 ------------------------LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + +T +L ++ + A R++ Sbjct: 161 RADFSGRCAEHPALAAALREAALLVGPMTPEQLRAAV-------------VGPATAERLI 207 Query: 126 T--ELKGKAISLSSVVQQDMSCVNKEQAHI---CSMPSFAINAISAL------------- 167 EL + ++ ++ + ++ + A A+ Sbjct: 208 VERELTARIVADAAGEPGGLPLLSHALLETWRRRRGRTLTAEAYEAIGGMRGAVAHTAEE 267 Query: 168 --VNLGYGQDQATTAVVSVLKKEKNIADD 194 LG + QA A++ L + +D Sbjct: 268 VFTALGPHERQAARALLLRLISPGDATED 296 >gi|261418422|ref|YP_003252104.1| helicase, RecD/TraA family [Geobacillus sp. Y412MC61] gi|319767618|ref|YP_004133119.1| helicase, RecD/TraA family [Geobacillus sp. Y412MC52] gi|261374879|gb|ACX77622.1| helicase, RecD/TraA family [Geobacillus sp. Y412MC61] gi|317112484|gb|ADU94976.1| helicase, RecD/TraA family [Geobacillus sp. Y412MC52] Length = 786 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 28/101 (27%) Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 +G+G + A ++ + + +I+ + K + ++P ++ K A ++ Sbjct: 107 KGIGKKTAAAIVETLG-ENAIAAILR-DPKALERVPKLTKKKAKQL-------------- 150 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + AL LG+G A Sbjct: 151 ------------YDALRAHEGLEQTMIALAQLGFGPQLAMK 179 >gi|193213289|ref|YP_001999242.1| excinuclease ABC subunit C [Chlorobaculum parvum NCIB 8327] gi|193086766|gb|ACF12042.1| excinuclease ABC, C subunit [Chlorobaculum parvum NCIB 8327] Length = 629 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 17/105 (16%) Query: 27 IIYCPI-RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLS------DLDRQWFMLLQSVQ 79 I+ P R L K L +R + R F DR L ++ Sbjct: 523 EIFVPNERDPYNLPKTSPALKLL--QQLRDEAHR---FAITYHRKLRSDRTIRTELTGIK 577 Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 GVG + A +LSR + VE++ + + ++++ K A I Sbjct: 578 GVGEKSAEKLLSRFGS---VETVAKASIEELSEVT--GRKTAESI 617 >gi|167768241|ref|ZP_02440294.1| hypothetical protein CLOSS21_02797 [Clostridium sp. SS2/1] gi|167709765|gb|EDS20344.1| hypothetical protein CLOSS21_02797 [Clostridium sp. SS2/1] Length = 776 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 ++GVG +A + + +I + + +A++ GIS K A I E K Sbjct: 109 IKGVGPALAKRITKKFKMDTFR--VIEEEPERLAEVKGISEKKARAIAVEFSEK 160 >gi|317497793|ref|ZP_07956105.1| RecD/TraA family helicase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894906|gb|EFV17076.1| RecD/TraA family helicase [Lachnospiraceae bacterium 5_1_63FAA] Length = 755 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 ++GVG +A + + +I + + +A++ GIS K A I E K Sbjct: 88 IKGVGPALAKRITKKFKMDTFR--VIEEEPERLAEVKGISEKKARAIAVEFSEK 139 >gi|149927018|ref|ZP_01915276.1| recombination protein RecR [Limnobacter sp. MED105] gi|149824239|gb|EDM83459.1| recombination protein RecR [Limnobacter sp. MED105] Length = 211 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 9/46 (19%) Query: 84 RVAMGVLSRITA-TELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R A + +LV++ + ++PG+ K A R+ L Sbjct: 3 RSAFDAFDGLDPLVDLVQA--------LKRLPGVGPKSAQRLAFHL 40 >gi|83588903|ref|YP_428912.1| DNA replication and repair protein RecR [Moorella thermoacetica ATCC 39073] gi|123525295|sp|Q2RMH0|RECR_MOOTA RecName: Full=Recombination protein recR gi|83571817|gb|ABC18369.1| DNA replication and repair protein RecR [Moorella thermoacetica ATCC 39073] Length = 199 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 11/22 (50%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + ++PGI K A R+ L Sbjct: 11 ITALGRLPGIGPKTAQRLAFHL 32 >gi|307150454|ref|YP_003885838.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7822] gi|306980682|gb|ADN12563.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7822] Length = 742 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 14/83 (16%) Query: 39 GKIGD--FCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96 + G + ET L+ +++ L GVG A +++ Sbjct: 73 PQYGQQFEVQQYTETKPAT--------LTGMEKYLGSGLIK--GVGPVTAKRIVAHFGLE 122 Query: 97 ELVESIILQNSKVIAQIPGISMK 119 L II ++ + ++PGI K Sbjct: 123 TLE--IIENKTQRLIEVPGIGKK 143 >gi|167629259|ref|YP_001679758.1| recombination protein recr [Heliobacterium modesticaldum Ice1] gi|229890152|sp|B0TB20|RECR_HELMI RecName: Full=Recombination protein recR gi|167591999|gb|ABZ83747.1| recombination protein recr [Heliobacterium modesticaldum Ice1] Length = 199 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 6/22 (27%), Positives = 13/22 (59%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + ++++PG+ K A R+ L Sbjct: 12 IEELSKLPGVGPKTAQRLAFHL 33 >gi|83814168|ref|YP_445312.1| DNA processing protein DprA [Salinibacter ruber DSM 13855] gi|83755562|gb|ABC43675.1| DNA processing protein DprA [Salinibacter ruber DSM 13855] Length = 388 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 L V GVG + +L+ +I + + Q+ G+ + A I+T Sbjct: 26 LSLVSGVGPQRLRALLAAFETP---TAIFRASRSTLTQVDGVGDQTAEAILT 74 >gi|67921773|ref|ZP_00515290.1| RecR protein [Crocosphaera watsonii WH 8501] gi|67856365|gb|EAM51607.1| RecR protein [Crocosphaera watsonii WH 8501] Length = 202 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 15 IEQLQRLPGVGPKTAQRLAL 34 >gi|332666194|ref|YP_004448982.1| Recombination protein recR [Haliscomenobacter hydrossis DSM 1100] gi|332335008|gb|AEE52109.1| Recombination protein recR [Haliscomenobacter hydrossis DSM 1100] Length = 203 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 11/22 (50%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A +PGI K A R++ L Sbjct: 12 VNAFASLPGIGKKTALRLVLHL 33 >gi|256956726|ref|ZP_05560897.1| competence protein comEA [Enterococcus faecalis DS5] gi|256947222|gb|EEU63854.1| competence protein comEA [Enterococcus faecalis DS5] Length = 211 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + + GI K R+ Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 203 >gi|226227004|ref|YP_002761110.1| UvrABC system protein C [Gemmatimonas aurantiaca T-27] gi|259710341|sp|C1A8T0|UVRC_GEMAT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226090195|dbj|BAH38640.1| UvrABC system protein C [Gemmatimonas aurantiaca T-27] Length = 616 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 16/101 (15%) Query: 28 IYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 + P R+ L L + D F T RQ R L + GVG Sbjct: 505 VRLPRRSPALRMLQQARDEAHRFAITFQRQ---------KRAARTITSELLKIPGVGPTK 555 Query: 86 AMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125 +L + + E+ + Q IA IPG A R++ Sbjct: 556 RRALLHTFGSVQGVREASVEQ----IAAIPGFGAASARRLL 592 >gi|301066374|ref|YP_003788397.1| DNA uptake protein-like DNA-binding protein [Lactobacillus casei str. Zhang] gi|300438781|gb|ADK18547.1| DNA uptake protein related DNA-binding protein [Lactobacillus casei str. Zhang] Length = 227 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%) Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120 LQ++ G+G + A ++S R + ++ + ++ GI K Sbjct: 174 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 215 >gi|300709586|ref|YP_003735400.1| DNA mismatch repair protein MutS domain protein [Halalkalicoccus jeotgali B3] gi|299123269|gb|ADJ13608.1| DNA mismatch repair protein MutS domain protein [Halalkalicoccus jeotgali B3] Length = 658 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S+ GVGA+ A + + ++ + +A PGIS A+RI Sbjct: 5 SIPGVGAKTASALA---ELEDAKRALREGDVAALAGAPGISEGRAARI 49 >gi|302533805|ref|ZP_07286147.1| excinuclease ABC, C subunit [Streptomyces sp. C] gi|302442700|gb|EFL14516.1| excinuclease ABC, C subunit [Streptomyces sp. C] Length = 684 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 L V G+G + ++ + +L ++ I Q I ++PGI K A Sbjct: 598 LDDVPGLGESRKLALVKHFGSVKKLRQATIDQ----ICEVPGIGRKTAE 642 >gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101] gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101] Length = 662 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 444 AMNIAGFSERTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIM-----TELKGKAISLSSVVQQDMSCVNKE 149 +I + IP + +K A ++ E KA V QD+ + Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVAR 554 Query: 150 QAHICSMPSFAINAISALVNLG----YGQDQA 177 + I+ L++LG Y + + Sbjct: 555 SIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586 >gi|77458035|ref|YP_347540.1| recombination protein RecR [Pseudomonas fluorescens Pf0-1] gi|123605283|sp|Q3KFA5|RECR_PSEPF RecName: Full=Recombination protein recR gi|77382038|gb|ABA73551.1| recombination protein [Pseudomonas fluorescens Pf0-1] Length = 200 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + +PG+ K A R+ +L + S + + Q +S + H + + + Sbjct: 11 IDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMEGVGHCRQCRTLTEDDL 68 >gi|255513551|gb|EET89817.1| ERCC4 domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 222 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++ +G ++A +L + +++I + + ++ I K A +I Sbjct: 163 NIPDIGPKIATALLLHFGS---IKAISEATIEELCRVDKIGPKKAEKI 207 >gi|189466061|ref|ZP_03014846.1| hypothetical protein BACINT_02426 [Bacteroides intestinalis DSM 17393] gi|189434325|gb|EDV03310.1| hypothetical protein BACINT_02426 [Bacteroides intestinalis DSM 17393] Length = 205 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 16/32 (50%) Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + ++ + A++PG+ K A R++ L Sbjct: 4 QFSSILLEKAVSEFAKLPGVGRKTAMRLVLHL 35 >gi|326446014|ref|ZP_08220748.1| WD-40 repeat protein [Streptomyces clavuligerus ATCC 27064] Length = 1245 Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 65/209 (31%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P RT L G L V+ ++ L +R F+ L + G G R + V Sbjct: 176 APFRTHQALLTPG--ALLLVDQF--EEVFTLC--RDPAERDAFIGLLT--GPGRRAVLAV 227 Query: 90 ------------------------LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + +T +L ++ + A R++ Sbjct: 228 RADFSGRCAEHPALAAALREAALLVGPMTPEQLRAAV-------------VGPATAERLI 274 Query: 126 T--ELKGKAISLSSVVQQDMSCVNKEQAHI---CSMPSFAINAISAL------------- 167 EL + ++ ++ + ++ + A A+ Sbjct: 275 VERELTARIVADAAGEPGGLPLLSHALLETWRRRRGRTLTAEAYEAIGGMRGAVAHTAEE 334 Query: 168 --VNLGYGQDQATTAVVSVLKKEKNIADD 194 LG + QA A++ L + +D Sbjct: 335 VFTALGPHERQAARALLLRLISPGDATED 363 >gi|293389009|ref|ZP_06633491.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] gi|291081628|gb|EFE18591.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] Length = 59 Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 2/58 (3%) Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + A+ AL LGY + + + D + AL+ + Sbjct: 1 PAPEVVTTSNQALAEALEALSALGYSDREIKRITKQLEALGETTTDV--YLSNALKFM 56 >gi|302390204|ref|YP_003826025.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter oceani DSM 16646] gi|302200832|gb|ADL08402.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter oceani DSM 16646] Length = 406 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 245 EEDLALLDTIPGVGRRTAEQIIAE 268 >gi|239626524|ref|ZP_04669555.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516670|gb|EEQ56536.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 442 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGFLSDL----DRQWFMLLQS 77 V Y Y P+ SCL + G L + +R +GF ++ DR F + Sbjct: 250 VFYSAYIPVNEDSCLPSLPGGPPLLREHRLYQADWLLRFYGFRAEELLSEDRPNFNVFLD 309 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + L + +IPG+ +K ASRI+ Sbjct: 310 -----PKCDWALRHLEGFPVE-----VNLAPYDELLRIPGMGVKSASRIV 349 >gi|126656915|ref|ZP_01728093.1| recombination protein RecR [Cyanothece sp. CCY0110] gi|126621753|gb|EAZ92462.1| recombination protein RecR [Cyanothece sp. CCY0110] Length = 202 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 15 IEQLQRLPGVGPKTAQRLAL 34 >gi|119370543|sp|Q607S4|UVRC_METCA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 610 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 49/160 (30%) Query: 4 KIK-GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG---------------KIGDFCTL 47 +I+ G +E D + ID G I+ RTL+ LG K G Sbjct: 452 RIRAGEVEA--PDILFID-GGKG-QIHAAARTLAELGVENIRIIGIAKGPDRKPGMETLF 507 Query: 48 FV-----------------ETHMRQDQIRLFGFLSDLDRQ------WFMLLQSVQGVGAR 84 H+R + R F RQ LQ++ G+G + Sbjct: 508 QTGCSDPIVVKPDNPGSLLIQHIRDEAHR---FAITGHRQRRAKTVTRSPLQAIAGLGPK 564 Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +L + L + I + + ++ + GI+ ++A RI Sbjct: 565 RRQRLLRQFG--GLRQ-ISRADVEALSSVEGINRQLAQRI 601 >gi|169830252|ref|YP_001716234.1| recombination protein RecR [Candidatus Desulforudis audaxviator MP104C] gi|254790796|sp|B1I162|RECR_DESAP RecName: Full=Recombination protein recR gi|169637096|gb|ACA58602.1| recombination protein RecR [Candidatus Desulforudis audaxviator MP104C] Length = 198 Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 13/22 (59%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + +A++PGI K A R+ L Sbjct: 11 IEELARLPGIGPKTAQRLAFHL 32 >gi|21263932|sp|Q8YMF7|RECR_ANASP RecName: Full=Recombination protein recR Length = 197 Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 10 IEQLQRLPGVGPKTAQRLAL 29 >gi|317152945|ref|YP_004120993.1| excinuclease ABC subunit C [Desulfovibrio aespoeensis Aspo-2] gi|316943196|gb|ADU62247.1| excinuclease ABC, C subunit [Desulfovibrio aespoeensis Aspo-2] Length = 604 Score = 38.1 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G + A + R + + +++ + + I +PGI K A I Sbjct: 546 ELTLLPGIGPKTARLLWDRFESLD---AMLAADPQAIRALPGIGGKKAELI 593 >gi|237731959|ref|ZP_04562440.1| excinuclease ABC subunit C [Citrobacter sp. 30_2] gi|226907498|gb|EEH93416.1| excinuclease ABC subunit C [Citrobacter sp. 30_2] Length = 610 Score = 38.1 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + I + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASIEE----IAKVPGISQALAEKIFYSLK 609 >gi|74317464|ref|YP_315204.1| DNA polymerase X [Thiobacillus denitrificans ATCC 25259] gi|74056959|gb|AAZ97399.1| DNA polymerase X [Thiobacillus denitrificans ATCC 25259] Length = 574 Score = 38.1 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 20/96 (20%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L + G+G R + L T +L + + + PG K EL Sbjct: 95 ELLRIPGLGPRRVRALYHDLQVQTVEQLYRAARDGRIRAL---PGFGEKT------EL-- 143 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 +++ + +K Q ++ + +A+SA Sbjct: 144 ------HIIEAIEAHASKTQRFKLAVAAQYADALSA 173 >gi|330990424|ref|ZP_08314384.1| hypothetical protein SXCC_00337 [Gluconacetobacter sp. SXCC-1] gi|329762507|gb|EGG78991.1| hypothetical protein SXCC_00337 [Gluconacetobacter sp. SXCC-1] Length = 186 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++G+G A ++ E V +I Q + + ++ GI K A RI+ Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPERLREVTGIGPKRAERIV 145 >gi|298675853|ref|YP_003727603.1| DNA primase small subunit [Methanohalobium evestigatum Z-7303] gi|298288841|gb|ADI74807.1| DNA primase, small subunit [Methanohalobium evestigatum Z-7303] Length = 391 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 47/174 (27%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTL-FVE------------THMRQDQ----IRLFGFL 64 G Y + ++ LG + ++ +++ D +F F Sbjct: 146 GGRGYHFHISHPSVRSLGSAERREIVDYISGRGLDISQIIGKSYVSGDSGRRDASMFVFP 205 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN--SKVIAQIPGISMKIAS 122 S+ D G GA++ ++S I+ I+ N K + G+ A Sbjct: 206 SEND----------GGWGAKINRYIISYISN------IVNSNKPIKKLTGFSGVGKTTAE 249 Query: 123 RIM--------TEL--KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 +++ L KGK +S+ + + K+ + ++ + ++A Sbjct: 250 KLVNIFNDEKQLALLKKGKIDMVSNTSKNLFEYLGKQA--VDNLIANVDEPVTA 301 >gi|239631592|ref|ZP_04674623.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526057|gb|EEQ65058.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 220 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%) Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120 LQ++ G+G + A ++S R + ++ + ++ GI K Sbjct: 167 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 208 >gi|15896108|ref|NP_349457.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD [Clostridium acetobutylicum ATCC 824] gi|15025899|gb|AAK80797.1|AE007783_4 ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD [Clostridium acetobutylicum ATCC 824] gi|325510262|gb|ADZ21898.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit [Clostridium acetobutylicum EA 2018] Length = 739 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + G+G A ++++ L I+ + +++I GI K +I Sbjct: 89 ISGIGPVTAKKIVNKFGEKTLE--ILDNDIYRLSEIEGIGKKKIDKI 133 >gi|333027927|ref|ZP_08455991.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071] gi|332747779|gb|EGJ78220.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071] Length = 907 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 18/94 (19%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L ++ D F T+ R S ++ F L V G+G +L Sbjct: 527 LYLLQRVRDEAHRFAITYQR----------SKRAKR-FRAGPLDEVPGLGQTRKQALLKH 575 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRIM 125 + +L + I Q I ++PGI K A I+ Sbjct: 576 FGSVKKLRAATIEQ----ICEVPGIGRKTAETIL 605 >gi|254412067|ref|ZP_05025842.1| recombination protein RecR [Microcoleus chthonoplastes PCC 7420] gi|196181033|gb|EDX76022.1| recombination protein RecR [Microcoleus chthonoplastes PCC 7420] Length = 189 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 2 IEQLQRLPGVGPKTAQRLAL 21 >gi|191638323|ref|YP_001987489.1| ComE operon protein 1 [Lactobacillus casei BL23] gi|190712625|emb|CAQ66631.1| ComE operon protein 1 [Lactobacillus casei BL23] gi|327382349|gb|AEA53825.1| hypothetical protein LC2W_1492 [Lactobacillus casei LC2W] gi|327385550|gb|AEA57024.1| hypothetical protein LCBD_1527 [Lactobacillus casei BD-II] Length = 226 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%) Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120 LQ++ G+G + A ++S R + ++ + ++ GI K Sbjct: 173 QLQTISGIGPKKAADIISYRDSHGGF------KDVAELKEVHGIGDKT 214 >gi|158337044|ref|YP_001518219.1| recombination protein RecR [Acaryochloris marina MBIC11017] gi|189039775|sp|B0C882|RECR_ACAM1 RecName: Full=Recombination protein recR gi|158307285|gb|ABW28902.1| recombination protein RecR [Acaryochloris marina MBIC11017] Length = 200 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + + ++PGI K A R+ L Sbjct: 13 VEQLQRLPGIGPKSAQRLALHL 34 >gi|320161955|ref|YP_004175180.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1] gi|319995809|dbj|BAJ64580.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1] Length = 581 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 62 GFLSDLDRQW---FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 GFL L+++ + L + GVG R A + T LVE + +PG+ Sbjct: 83 GFLERLEQEVPPTLLDLLRIPGVGPRKAALFWKTLHITTLVELEKAAREGRLRSLPGMGE 142 Query: 119 KIASRIMTE 127 K + + + Sbjct: 143 KS-EKAILD 150 >gi|148643247|ref|YP_001273760.1| Hef nuclease [Methanobrevibacter smithii ATCC 35061] gi|222445478|ref|ZP_03607993.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii DSM 2375] gi|261349960|ref|ZP_05975377.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM 2374] gi|148552264|gb|ABQ87392.1| ERCC4-like helicase [Methanobrevibacter smithii ATCC 35061] gi|222435043|gb|EEE42208.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii DSM 2375] gi|288860743|gb|EFC93041.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM 2374] Length = 772 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 ++Q F+ ++S+ +G A +L T ++ + Q + ++ GI K A+ I Sbjct: 699 EQQLFI-IESLPNIGPVNAKNLLEHFGTVANIINASESQ----LQEVEGIGKKTAANI 751 >gi|319745670|gb|EFV97969.1| exodeoxyribonuclease V alpha subunit [Streptococcus agalactiae ATCC 13813] Length = 806 Score = 37.7 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 Q GI K A RI+ EL G + ++ + I + A A + L Sbjct: 94 QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146 Query: 172 YGQDQATTAVVS 183 YG +Q + Sbjct: 147 YGTEQVLAKLAE 158 >gi|224539567|ref|ZP_03680106.1| hypothetical protein BACCELL_04474 [Bacteroides cellulosilyticus DSM 14838] gi|224518801|gb|EEF87906.1| hypothetical protein BACCELL_04474 [Bacteroides cellulosilyticus DSM 14838] Length = 205 Score = 37.7 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 16/32 (50%) Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + ++ + A++PG+ K A R++ L Sbjct: 4 QFSSILLEKAVSEFAKLPGVGRKTAMRLVLHL 35 >gi|224475613|ref|YP_002633219.1| recombination protein RecR [Staphylococcus carnosus subsp. carnosus TM300] gi|254790783|sp|B9DLF7|RECR_STACT RecName: Full=Recombination protein recR gi|222420220|emb|CAL27034.1| putative recombination protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 198 Score = 37.7 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRI---MTELK 129 ++PGI K A R+ + ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHVLDMK 36 >gi|332710481|ref|ZP_08430428.1| DNA replication and repair protein RecR [Lyngbya majuscula 3L] gi|332350812|gb|EGJ30405.1| DNA replication and repair protein RecR [Lyngbya majuscula 3L] Length = 198 Score = 37.7 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 11 IEELQRLPGVGPKTAQRLAL 30 >gi|307209304|gb|EFN86389.1| DNA polymerase beta [Harpegnathos saltator] Length = 333 Score = 37.7 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Query: 76 QSVQGVGARVAMGV---LSRITATELVESIILQNSK-----VIAQIPGISMKIASRIM 125 + G+G ++A + L T EL + + ++ K ++ +IPGI A +++ Sbjct: 63 MKLPGIGKKIADHINEFLETGTHKELQQ--VKKDDKQDAIILLMKIPGIGPAKAEQLI 118 >gi|237807578|ref|YP_002892018.1| DNA-directed DNA polymerase [Tolumonas auensis DSM 9187] gi|237499839|gb|ACQ92432.1| DNA-directed DNA polymerase [Tolumonas auensis DSM 9187] Length = 351 Score = 37.7 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 7/17 (41%), Positives = 12/17 (70%) Query: 109 VIAQIPGISMKIASRIM 125 +++IPGI K A R++ Sbjct: 177 ALSKIPGIGGKTAERLV 193 >gi|302389095|ref|YP_003824916.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter oceani DSM 16646] gi|302199723|gb|ADL07293.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter oceani DSM 16646] Length = 356 Score = 37.7 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 195 EEDLALLDTIPGVGRRTAEQIIAE 218 >gi|283832687|ref|ZP_06352428.1| excinuclease ABC subunit C [Citrobacter youngae ATCC 29220] gi|291072363|gb|EFE10472.1| excinuclease ABC subunit C [Citrobacter youngae ATCC 29220] Length = 610 Score = 37.7 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + I + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASIEE----IAKVPGISQALAEKIFYSLK 609 >gi|119473243|ref|ZP_01614920.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7] gi|119444537|gb|EAW25854.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7] Length = 98 Score = 37.7 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 102 IILQNSKVIAQIPGISMKIASRIM 125 I ++K++A++PGI K A I+ Sbjct: 40 INSADAKMLAKLPGIGKKKAQAIV 63 >gi|108805770|ref|YP_645707.1| helix-hairpin-helix DNA-binding, class 1 [Rubrobacter xylanophilus DSM 9941] gi|108767013|gb|ABG05895.1| Helix-hairpin-helix DNA-binding, class 1 [Rubrobacter xylanophilus DSM 9941] Length = 350 Score = 37.7 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 24/47 (51%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 L+ V+GV R A I EL E I + K ++++PG+ + A Sbjct: 114 LERVRGVDRRAAAKAAEAIGPGELRELIAAGDVKDLSRLPGMGERRA 160 >gi|297529274|ref|YP_003670549.1| helicase, RecD/TraA family [Geobacillus sp. C56-T3] gi|297252526|gb|ADI25972.1| helicase, RecD/TraA family [Geobacillus sp. C56-T3] Length = 786 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 28/101 (27%) Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 +G+G + A ++ + + +I+ + K + ++P ++ K A ++ Sbjct: 107 KGIGKKTAAAIVETLG-ENAIAAILR-DPKTLERVPKLTKKKAKQL-------------- 150 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + AL LG+G A Sbjct: 151 ------------YDALRAHEGLEQTMIALAQLGFGPQLAMK 179 >gi|224024429|ref|ZP_03642795.1| hypothetical protein BACCOPRO_01154 [Bacteroides coprophilus DSM 18228] gi|224017651|gb|EEF75663.1| hypothetical protein BACCOPRO_01154 [Bacteroides coprophilus DSM 18228] Length = 226 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 16/29 (55%) Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128 +++ + A++PGI K A R++ L Sbjct: 28 SALLEKAVGEFAKLPGIGRKTAMRLVLHL 56 >gi|218439363|ref|YP_002377692.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7424] gi|218172091|gb|ACK70824.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7424] Length = 747 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 14/83 (16%) Query: 39 GKIGD--FCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96 + G + ET L+ +++ L G+G +A +++ Sbjct: 73 PQYGQQFEVQQYTETKPAT--------LTGMEKYLGSGLIK--GLGPVMARRIVAHFGLE 122 Query: 97 ELVESIILQNSKVIAQIPGISMK 119 L II ++ + ++PGI K Sbjct: 123 TLE--IIENKTERLIEVPGIGKK 143 >gi|77412139|ref|ZP_00788462.1| helicase, RecD/TraA family [Streptococcus agalactiae CJB111] gi|77161799|gb|EAO72787.1| helicase, RecD/TraA family [Streptococcus agalactiae CJB111] Length = 806 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 Q GI K A RI+ EL G + ++ + I + A A + L Sbjct: 94 QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146 Query: 172 YGQDQATTAVVS 183 YG +Q + Sbjct: 147 YGTEQVLAKLAE 158 >gi|307565357|ref|ZP_07627850.1| recombination protein RecR [Prevotella amnii CRIS 21A-A] gi|307346026|gb|EFN91370.1| recombination protein RecR [Prevotella amnii CRIS 21A-A] Length = 202 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 96 TELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 E ++ + +Q PGI K A R++ L Sbjct: 2 QEFHSLLLEKAVNEFSQFPGIGRKTALRLVLHL 34 >gi|302551555|ref|ZP_07303897.1| exodeoxyribonuclease V, alpha subunit [Streptomyces viridochromogenes DSM 40736] gi|302469173|gb|EFL32266.1| exodeoxyribonuclease V, alpha subunit [Streptomyces viridochromogenes DSM 40736] Length = 756 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A V L II + K + ++PG+ K +I Sbjct: 102 VKGIGPVFADRVTQHFGLDTLR--IIEEEPKRLIEVPGLGPKRTKKI 146 >gi|256963616|ref|ZP_05567787.1| competence protein comEA [Enterococcus faecalis HIP11704] gi|256954112|gb|EEU70744.1| competence protein comEA [Enterococcus faecalis HIP11704] Length = 211 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+GA+ A ++ +++ + + GI K R+ Sbjct: 158 ELQTISGIGAKKAQEIIRFRDEQGPFKTVEE-----LKNVSGIGEKTVERL 203 >gi|53804488|ref|YP_113677.1| hypothetical protein MCA1213 [Methylococcus capsulatus str. Bath] gi|53758249|gb|AAU92540.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 574 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 6/96 (6%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L + G+G + + L T +L ++ + +A G K SRI L Sbjct: 95 ELLKIPGLGPKRVKALYHELDIHTVEQLQRAVRDHRIRSLA---GFGEKTESRIAEALAT 151 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 + + A + + A Sbjct: 152 HGGGAGRFKLVTAAQYAEPLAAWLRAVPGVDDVVVA 187 >gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1] gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1] gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1] gi|167727974|emb|CAP14762.1| nuclease domain protein / probable ATP-dependent helicase [Halobacterium salinarum R1] Length = 784 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + S+ VG A +L + VE+++ + + G+ A RI Sbjct: 727 VSSITDVGPVTARSLLDTFGS---VEAVMTASEDELTAADGVGAVTAERI 773 >gi|22537863|ref|NP_688714.1| helicase [Streptococcus agalactiae 2603V/R] gi|76787041|ref|YP_330332.1| RecD/TraA family helicase [Streptococcus agalactiae A909] gi|76798404|ref|ZP_00780645.1| helicase, RecD/TraA family [Streptococcus agalactiae 18RS21] gi|77405957|ref|ZP_00783036.1| helicase, RecD/TraA family [Streptococcus agalactiae H36B] gi|22534759|gb|AAN00587.1|AE014270_5 helicase, putative [Streptococcus agalactiae 2603V/R] gi|76562098|gb|ABA44682.1| helicase, RecD/TraA family [Streptococcus agalactiae A909] gi|76586236|gb|EAO62753.1| helicase, RecD/TraA family [Streptococcus agalactiae 18RS21] gi|77175409|gb|EAO78199.1| helicase, RecD/TraA family [Streptococcus agalactiae H36B] Length = 806 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 Q GI K A RI+ EL G + ++ + I + A A + L Sbjct: 94 QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146 Query: 172 YGQDQATTAVVS 183 YG +Q + Sbjct: 147 YGTEQVLAKLAE 158 >gi|332883359|gb|EGK03642.1| recombination protein recR [Dysgonomonas mossii DSM 22836] Length = 207 Score = 37.7 bits (87), Expect = 0.90, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 15/29 (51%) Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128 +++ A++PGI K A R++ L Sbjct: 7 SALLENAVNEFAKLPGIGRKTALRLILHL 35 >gi|289579052|ref|YP_003477679.1| Tn7-like transposition protein C [Thermoanaerobacter italicus Ab9] gi|289528765|gb|ADD03117.1| Tn7-like transposition protein C [Thermoanaerobacter italicus Ab9] Length = 553 Score = 37.7 bits (87), Expect = 0.90, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 147 NKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +++ ++ S AI L+ L +A AV V++ E D S+++ A++ +S Sbjct: 437 QRKEEEKEALLSIKEQAIIKLLELNIEAKKAQKAVEQVIEAEGEKIDVSELVVKAIKLLS 496 Query: 207 C 207 Sbjct: 497 T 497 >gi|297562768|ref|YP_003681742.1| helicase, RecD/TraA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847216|gb|ADH69236.1| helicase, RecD/TraA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 750 Score = 37.7 bits (87), Expect = 0.90, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 ++G+G ++A ++ L +I ++ + + ++PG+ K +R++ + Sbjct: 98 IKGIGPKMAERIVDHFGTDALE--VIEEHPERLIEVPGLGPKR-TRLIAD 144 >gi|330808466|ref|YP_004352928.1| Recombination protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376574|gb|AEA67924.1| Recombination protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 200 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152 + +PG+ K A R+ +L + S S + Q +S + H Sbjct: 11 IDALRTLPGVGQKTAQRMALQLLERDRSGGSRLAQALSQAMEGVGH 56 >gi|291278576|ref|YP_003495411.1| DNA recombination protein RecR [Deferribacter desulfuricans SSM1] gi|290753278|dbj|BAI79655.1| DNA recombination protein RecR [Deferribacter desulfuricans SSM1] Length = 199 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 13/19 (68%) Query: 110 IAQIPGISMKIASRIMTEL 128 ++++PGI K A+R+ L Sbjct: 14 LSKLPGIGKKTATRLALHL 32 >gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916] gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916] Length = 664 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 27/172 (15%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y YC TLSC ++ V R+ + + GF Q F L ++ + Sbjct: 417 NGVHY--YC-ENTLSCKPQM---VKSIVHFASRE-AMNIAGFSKKTAEQLFEKL-DIKSI 468 Query: 82 G--ARVAMGVLSRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTE 127 ++ L + + L+++I + IP + K A+ ++ + Sbjct: 469 ADLYKIKKEELLTLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMK 528 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA-----ISALVNLGYGQ 174 K ++ ++Q + + + S+ F + I L+NLG Sbjct: 529 FKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKP 580 >gi|186471701|ref|YP_001863019.1| Tn7-like transposition protein C [Burkholderia phymatum STM815] gi|184198010|gb|ACC75973.1| Tn7-like transposition protein C [Burkholderia phymatum STM815] Length = 540 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Query: 118 MKIASRIMTELKGKAISL------SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 K RI EL + + +Q S + A S + A+S L+ +G Sbjct: 405 KK--RRI--ELYDDLLVEMLAGLDEEIRKQTESAKVMQAATQRQRNSVQLIAVSDLIAMG 460 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 Q QA TAV++ L ++ ++ ++R A Sbjct: 461 VPQSQALTAVIAALTEDDSLT-GEDLVRAA 489 >gi|148654262|ref|YP_001274467.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1] gi|148566372|gb|ABQ88517.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1] Length = 580 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 31/120 (25%), Gaps = 32/120 (26%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMK---------- 119 L V GVG R A + L + EL + +A + G K Sbjct: 95 RELLRVPGVGPRTAGRLYRELGITSLAELKRAAEEG---RLATLKGFGAKMIEGILQGIS 151 Query: 120 ----------------IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 A ++ L+ A +L + + A +A Sbjct: 152 VAERQERRMLLAHALETAEELILALRTAAPTLRQATYAGSLRRGRPTVGDLDILVAADDA 211 >gi|145344073|ref|XP_001416563.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576789|gb|ABO94856.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 1843 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 RI+ + S++S + + V A S + ++AI AL+ L +AV Sbjct: 1753 RIV---RDSKESVASFAVEPLLEVVVAAAGDSSSTALRLDAIEALLALA-SHTPVKSAVE 1808 Query: 183 SVLKKEKNIADDSQIIRLALRA 204 LK+ ++R A+RA Sbjct: 1809 DALKQCVTNDKSPDVVRSAMRA 1830 >gi|25011808|ref|NP_736203.1| hypothetical protein gbs1769 [Streptococcus agalactiae NEM316] gi|77413668|ref|ZP_00789852.1| helicase, RecD/TraA family [Streptococcus agalactiae 515] gi|24413349|emb|CAD47428.1| Unknown [Streptococcus agalactiae NEM316] gi|77160268|gb|EAO71395.1| helicase, RecD/TraA family [Streptococcus agalactiae 515] Length = 806 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 Q GI K A RI+ EL G + ++ + I + A A + L Sbjct: 94 QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146 Query: 172 YGQDQATTAVVS 183 YG +Q + Sbjct: 147 YGTEQVLAKLAE 158 >gi|325694042|gb|EGD35960.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK150] Length = 445 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 5/92 (5%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY--GQDQAT 178 A + + +LK + + ++ + N A + ++ L NLGY + + Sbjct: 182 AEKGLLQLKLEGPASDTLELEAGQAFNVVPAKASYSGDLLESVVAGLKNLGYEFERAEEE 241 Query: 179 TAVVSVLKKEKNIA-DDSQIIRLA--LRAISC 207 V+ + K K+ A + IIRLA L+ + Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQPLDS 273 >gi|310826753|ref|YP_003959110.1| hypothetical protein ELI_1159 [Eubacterium limosum KIST612] gi|308738487|gb|ADO36147.1| hypothetical protein ELI_1159 [Eubacterium limosum KIST612] Length = 736 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 G+G + A+ +++ A L I+ + ++++ GI K +I Sbjct: 89 PGIGEKTAIEIVNHFGADTLD--ILDNHPDRLSEVHGIGKKTLDKI 132 >gi|225375281|ref|ZP_03752502.1| hypothetical protein ROSEINA2194_00906 [Roseburia inulinivorans DSM 16841] gi|225212948|gb|EEG95302.1| hypothetical protein ROSEINA2194_00906 [Roseburia inulinivorans DSM 16841] Length = 474 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y + + S L + L E + Q L + F +D +R F + Sbjct: 293 VFYSAFVNVTHNSNLPALPGGPPLLREHRLYQADWLLRYYKFKADELLSPERPDFNIFLD 352 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + + ++PGI K ASRI+ Sbjct: 353 -----PKCDWAIRHLEYFPVE-----INRADYDTLLRVPGIGYKSASRIV 392 >gi|119713123|gb|ABL97192.1| recombination protein RecR [uncultured marine bacterium EB0_49D07] Length = 195 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 12/25 (48%) Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131 + + +PG+ K A R+ L K Sbjct: 10 IEALTILPGVGKKSAQRMALFLLDK 34 >gi|29840243|ref|NP_829349.1| recombination protein RecR [Chlamydophila caviae GPIC] gi|33301498|sp|Q823D7|RECR_CHLCV RecName: Full=Recombination protein recR gi|29834591|gb|AAP05227.1| recombination protein RecR [Chlamydophila caviae GPIC] Length = 200 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152 ++ ++PGI K A ++ EL + Q S V+ ++H Sbjct: 12 ISLLRKLPGIGFKTAEKLAFELLDWDQDQLEAMGQAFSEVSAARSH 57 >gi|77409449|ref|ZP_00786143.1| helicase, RecD/TraA family [Streptococcus agalactiae COH1] gi|77171941|gb|EAO75116.1| helicase, RecD/TraA family [Streptococcus agalactiae COH1] Length = 763 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 Q GI K A RI+ EL G + ++ + I + A A + L Sbjct: 94 QFKGIGKKTAQRIV-ELYG------DNTIDKILESPEQLSTISGLSKINREAFIAKLKLN 146 Query: 172 YGQDQATTAVVS 183 YG +Q + Sbjct: 147 YGTEQVLAKLAE 158 >gi|326800491|ref|YP_004318310.1| recombination protein recR [Sphingobacterium sp. 21] gi|326551255|gb|ADZ79640.1| Recombination protein recR [Sphingobacterium sp. 21] Length = 204 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 +++PGI K A R++ L + + ++ + E + + A AI Sbjct: 12 VNEFSRLPGIGQKTALRLVLHLLNQPADDVTKFSDALTKLKSEICYCAVCHNIADEAI 69 >gi|50546232|ref|XP_500637.1| YALI0B08338p [Yarrowia lipolytica] gi|49646503|emb|CAG82879.1| YALI0B08338p [Yarrowia lipolytica] Length = 4696 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 17/147 (11%) Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRIT--ATELVESIILQNSKVIAQIPGISMKIASRI 124 +RQ + +V GV A ++ + + + + E+I + ++ G ++ Sbjct: 1223 DERQLYDH-VTVPGVDANSSVVMTNGLRRLVYLVQEAIKHKEPILLVGETGCGKTTVCQL 1281 Query: 125 MTELKGK----AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL------GYGQ 174 + E + K + ++ D+ + + + S +A+ L L G Sbjct: 1282 LAEARDKELHIVNAHQNMETGDIIGSFRPVRNRSDLESRFRDAL--LEALGDEDTAGLSN 1339 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLA 201 + +S+LKK+ + I+ A Sbjct: 1340 SELDVKYLSLLKKDPESFPEE--IKQA 1364 >gi|307326032|ref|ZP_07605230.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113] gi|306888254|gb|EFN19242.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113] Length = 736 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 L SV G+G +L + L + + Q I ++PG+ K A Sbjct: 651 LDSVPGLGDSRKQALLKHFGSVKRLRAATVEQ----ICEVPGVGRKTAE 695 >gi|53804578|ref|YP_113788.1| recombination protein RecR [Methylococcus capsulatus str. Bath] gi|73621498|sp|Q609A9|RECR_METCA RecName: Full=Recombination protein recR gi|53758339|gb|AAU92630.1| recombination protein RecR [Methylococcus capsulatus str. Bath] Length = 198 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%) Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCVN 147 + + +PG+ K A R+ L + A LS ++Q + V Sbjct: 11 IEALRCLPGVGPKTAQRMTLHLLQRDRDAAGRLSEALRQALEKVG 55 >gi|322804437|emb|CBZ01987.1| recd-like DNA helicase YrrC [Clostridium botulinum H04402 065] Length = 744 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 + G+G A ++ + L I+ N + + +I GI K Sbjct: 88 ISGIGPVTAKKIVKKFGEATLN--ILDNNIERLTEIEGIGKKKIE 130 >gi|297195043|ref|ZP_06912441.1| UvrABC system protein C [Streptomyces pristinaespiralis ATCC 25486] gi|197721566|gb|EDY65474.1| UvrABC system protein C [Streptomyces pristinaespiralis ATCC 25486] Length = 688 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 L +V G+G ++ + L ++ I Q I ++PG+ K A ++ L A Sbjct: 611 LDAVPGLGETRKQALIKHFGSVKRLRQATIEQ----ICEVPGMGRKTAESVVVALAQTAP 666 Query: 134 SLSSVVQQDMSCVNKEQAHICS 155 +V + + + Sbjct: 667 PAPAVNTATGEIIEESDGGSTT 688 >gi|34497067|ref|NP_901282.1| recombination protein RecR [Chromobacterium violaceum ATCC 12472] gi|73621478|sp|Q7NXL4|RECR_CHRVO RecName: Full=Recombination protein recR gi|34102924|gb|AAQ59288.1| DNA repair DNA recombination zinc-finger protein [Chromobacterium violaceum ATCC 12472] Length = 198 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%) Query: 107 SKVIAQIPGISMKIASRIMTEL--KGKAISLSSVVQQDMSCVN 147 + +PG+ K A R+ L + K + D + Sbjct: 11 ISALKVLPGVGPKTAQRMAFHLLQRDKQGADKLARALDRALTQ 53 >gi|258510127|ref|YP_003183561.1| recombination protein RecR [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476853|gb|ACV57172.1| recombination protein RecR [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 199 Score = 37.7 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRI---MTELKGKAISLSSVVQQDMSCVNKEQA 151 + +I ++PG+ K A+R+ + E+ + + D+ E A Sbjct: 5 PEPVARAIEH-----FMKLPGVGPKTAARLAFHVLEMSEADVKAFAKALIDLKTGLTECA 59 Query: 152 HICSMPSFAINAI 164 C++ + AI Sbjct: 60 VCCNITEASPCAI 72 >gi|304411681|ref|ZP_07393293.1| ERCC4 domain protein [Shewanella baltica OS183] gi|307306267|ref|ZP_07586012.1| ERCC4 domain protein [Shewanella baltica BA175] gi|304349869|gb|EFM14275.1| ERCC4 domain protein [Shewanella baltica OS183] gi|306911140|gb|EFN41567.1| ERCC4 domain protein [Shewanella baltica BA175] Length = 212 Score = 37.7 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +Q F+ LQS+ VG ++A +L + VE+++ + + + Q+ GI AS+I Sbjct: 155 QQLFI-LQSLPEVGPKLANKLLCHFAS---VEAVVTASEEALMQVGGIGKNKASKI 206 >gi|292493086|ref|YP_003528525.1| excinuclease ABC, C subunit [Nitrosococcus halophilus Nc4] gi|291581681|gb|ADE16138.1| excinuclease ABC, C subunit [Nitrosococcus halophilus Nc4] Length = 604 Score = 37.7 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+++ G+G + +L+++ L E + +A++PGIS +A RI Sbjct: 552 LETIPGLGPKRRQRLLTQLG--GLREVARAG-VEELARVPGISPGLAQRI 598 >gi|167040534|ref|YP_001663519.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X514] gi|256751705|ref|ZP_05492579.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914579|ref|ZP_07131895.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] gi|307724186|ref|YP_003903937.1| transposase IS110 family protein [Thermoanaerobacter sp. X513] gi|166854774|gb|ABY93183.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X514] gi|256749374|gb|EEU62404.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889514|gb|EFK84660.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] gi|307581247|gb|ADN54646.1| transposase IS110 family protein [Thermoanaerobacter sp. X513] Length = 406 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 Q+ ++ IPG+ + A +I+ E Sbjct: 245 EQDLALLDTIPGVGRRTAEQIIAE 268 >gi|91792785|ref|YP_562436.1| recombination protein RecR [Shewanella denitrificans OS217] gi|123356908|sp|Q12PB3|RECR_SHEDO RecName: Full=Recombination protein recR gi|91714787|gb|ABE54713.1| recombination protein RecR [Shewanella denitrificans OS217] Length = 199 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 8/70 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL+++ + +PG+ K A R+ L + + + + + + H Sbjct: 7 VDELIQA--------LKGLPGVGPKSAQRMAFNLLERDRKVGLKLAESLKNAMTDVGHCQ 58 Query: 155 SMPSFAINAI 164 S +F ++ Sbjct: 59 SCRTFTEQSL 68 >gi|56697474|ref|YP_167842.1| uroporphyrin-III C-methyltransferase [Ruegeria pomeroyi DSS-3] gi|56679211|gb|AAV95877.1| uroporphyrin-III C-methyltransferase [Ruegeria pomeroyi DSS-3] Length = 258 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 18/125 (14%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG------ISMKIAS----RIM 125 QS+ G A+ L+ + +A+ PG + K A R++ Sbjct: 137 QSLTRRGRNSAVRFLTGHDMQGF----ADHDWTALAR-PGAVAAIYMGKKSARFVQGRLI 191 Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS---ALVNLGYGQDQATTAVV 182 +A ++ V + +P+ A AL LG A TA+ Sbjct: 192 MHGADRATPVTLVENASRPDQRVLATTLDRLPADLAAAEMDGPALTFLGLAPRDAATALS 251 Query: 183 SVLKK 187 ++ K+ Sbjct: 252 TINKE 256 >gi|313665092|ref|YP_004046963.1| glycosyl hydrolase, family 31 [Mycoplasma leachii PG50] gi|312950007|gb|ADR24603.1| glycosyl hydrolase, family 31 [Mycoplasma leachii PG50] Length = 755 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77 +++ +T +IG T + + QD + L+ F + ++ + LL Sbjct: 224 GFLVNTSCKTTF---EIGSPTTDILSFKVDQDFLDLYLFSNQSLKELVSSYTLLTNRISK 280 Query: 78 VQGVGARVAMGVLSRITATELVESI 102 V +G V + L EL E+I Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305 >gi|110597648|ref|ZP_01385933.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] gi|110340768|gb|EAT59245.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] Length = 418 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 23/112 (20%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR---------QWFM 73 V Y Y P+ + L + L + +R +GF S + + F Sbjct: 251 VYYSAYVPVSDDNRLPVLAAPPLLREHRLYQADWLLRFYGF-SAEEILSDDAPHLDESFD 309 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A + I + + ++PGI + A RI+ Sbjct: 310 ---------PKTAWALRH---PEFFPVEINRADYATLLRVPGIGVTSAKRIV 349 >gi|530423|emb|CAA83743.1| similar to isomaltase-sucrase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 316 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77 +++ +T +IG T + + QD + L+ F + ++ + LL Sbjct: 224 GFLVNTSCKTTF---EIGSPTTDILSFKVDQDFLDLYLFSNQSLKELVSSYTLLTNRISK 280 Query: 78 VQGVGARVAMGVLSRITATELVESI 102 V +G V + L EL E+I Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305 >gi|83320029|ref|YP_424147.1| isoglycosyl hydrolase family protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283915|gb|ABC01847.1| isoglycosyl hydrolases family 31, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 755 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77 +++ +T +IG T + + QD + L+ F + ++ + LL Sbjct: 224 GFLVNTSCKTTF---EIGSPTTDILSFKVDQDFLDLYLFSNQSLKELVSSYTLLTNRISK 280 Query: 78 VQGVGARVAMGVLSRITATELVESI 102 V +G V + L EL E+I Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305 >gi|315925751|ref|ZP_07921958.1| recombination protein R [Pseudoramibacter alactolyticus ATCC 23263] gi|315620860|gb|EFV00834.1| recombination protein R [Pseudoramibacter alactolyticus ATCC 23263] Length = 200 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 12/24 (50%) Query: 107 SKVIAQIPGISMKIASRIMTELKG 130 ++++PGI K A R+ L Sbjct: 12 VAELSKLPGIGEKTAQRLAFHLID 35 >gi|284034556|ref|YP_003384487.1| SNF2-like protein [Kribbella flavida DSM 17836] gi|283813849|gb|ADB35688.1| SNF2-related protein [Kribbella flavida DSM 17836] Length = 742 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 12/89 (13%) Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167 + +PGI K A K V D++ + + + ++ L Sbjct: 101 AELVALPGIGPKTA--------DKITEAVRAVVGDVARSAQFRFQPDRPDDAQRDLLATL 152 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + +A AV ++ + + +Q Sbjct: 153 TAI----RRADAAVAGLIGPVRELTGVTQ 177 >gi|199598189|ref|ZP_03211611.1| DNA uptake protein related DNA-binding protein [Lactobacillus rhamnosus HN001] gi|258508329|ref|YP_003171080.1| DNA uptake protein-like DNA-binding protein [Lactobacillus rhamnosus GG] gi|199590950|gb|EDY99034.1| DNA uptake protein related DNA-binding protein [Lactobacillus rhamnosus HN001] gi|257148256|emb|CAR87229.1| DNA uptake protein related DNA-binding protein [Lactobacillus rhamnosus GG] gi|259649645|dbj|BAI41807.1| DNA uptake protein [Lactobacillus rhamnosus GG] Length = 221 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 7/48 (14%) Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120 L ++ G+G + A ++S R + ++ + ++ GI K Sbjct: 168 QLTTISGIGPKKAADIISYRDSHGGF------KDINELKEVHGIGDKT 209 >gi|149173335|ref|ZP_01851965.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797] gi|148847517|gb|EDL61850.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797] Length = 573 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 75 LQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKIASRIMTE 127 + + G+G + + S ++ +L + VIA+ G K +I+ E Sbjct: 95 MLDIPGIGPKKVAFLFSELSIQSLDDLKAAAENG---VIAEQKGFGKKT-EQIILE 146 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 19/77 (24%) Query: 75 LQSVQGVGA------RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT-- 126 L +QG R A +S + + + I+ + + + +PGI +A +I+T Sbjct: 16 LLEIQGANPFRLRAYRNAARTISGL-PDSIQD-IVESDPRELQDLPGIGKDLAEKIVTIV 73 Query: 127 ---------ELKGKAIS 134 ELK + + Sbjct: 74 ETSTLPQLEELKEQIPA 90 >gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] Length = 885 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 63/223 (28%) Query: 25 CYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFGFLSDLDRQ----WFMLLQSVQ 79 Y I TLS G G + +D ++L G +R L V+ Sbjct: 110 GYEADDLIGTLSRQGAATGLEVLILT---GDRDALQLVG-----ERVKVLLMRRGLSQVE 161 Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQ--------IPGISMKIASRIMT----- 126 + R A+ + +L+ + K + +PG+ K A +++ Sbjct: 162 VID-REAIKKNYGLEPEQLI------DVKALMGDASDNIPGVPGVGEKTAVQLVRQYGDL 214 Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------------AISA 166 E+KG+ ++ + V D + + + A I ++ A+ A Sbjct: 215 EGVLAHSGEIKGRRVAENLVTFADQARLARRLATIDCQAPVTLDLAGCCNQSPDYEAVLA 274 Query: 167 LVNLGYGQDQATTAVVSVL---KKEKNIADDSQIIRLALRAIS 206 L Y + + + V VL ++E A A+R +S Sbjct: 275 L----YKELEFHSLVKDVLRAMEQEGKKASQET---TAVRGLS 310 >gi|260549878|ref|ZP_05824094.1| DNA-binding protein [Acinetobacter sp. RUH2624] gi|260407128|gb|EEX00605.1| DNA-binding protein [Acinetobacter sp. RUH2624] Length = 420 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 13/108 (12%) Query: 24 VCYIIYCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQS 77 V Y Y PI T + L +G L E + +R +GF + ++ + L Sbjct: 252 VYYSGYIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPNLDL-- 309 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 V +++ + + + + ++I ++PGI +K A +I+ Sbjct: 310 --DVDPKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352 >gi|170759254|ref|YP_001785497.1| RecD/TraA family helicase [Clostridium botulinum A3 str. Loch Maree] gi|169406243|gb|ACA54654.1| helicase, RecD/TraA family [Clostridium botulinum A3 str. Loch Maree] Length = 744 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + G+G A ++ + L I+ N + + I GI K I Sbjct: 88 ISGIGPVTAKKIVKKFGEETLN--ILDNNIERLTDIEGIGKKKIEII 132 >gi|81428681|ref|YP_395681.1| putative type II secretion/competence system, protein ComEA-like [Lactobacillus sakei subsp. sakei 23K] gi|78610323|emb|CAI55372.1| Putative bacterial type II secretion/competence system, protein ComEA-like [Lactobacillus sakei subsp. sakei 23K] Length = 234 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+G + A +++ + I + ++ GI K ++ Sbjct: 182 QLQTLNGIGPKKAEQIIAYRDEQGKFKQIED-----LQKVGGIGPKTFEQL 227 >gi|326391909|ref|ZP_08213418.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus JW 200] gi|325992045|gb|EGD50528.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus JW 200] Length = 115 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 5 EKDLALLDTIPGVGRRTAEQIIAE 28 >gi|229552126|ref|ZP_04440851.1| competence protein EA [Lactobacillus rhamnosus LMS2-1] gi|258539539|ref|YP_003174038.1| DNA uptake protein-like DNA-binding protein [Lactobacillus rhamnosus Lc 705] gi|229314559|gb|EEN80532.1| competence protein EA [Lactobacillus rhamnosus LMS2-1] gi|257151215|emb|CAR90187.1| DNA uptake protein related DNA-binding protein [Lactobacillus rhamnosus Lc 705] Length = 221 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 7/48 (14%) Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKI 120 L ++ G+G + A ++S R + ++ + ++ GI K Sbjct: 168 QLTTISGIGPKKAADIISYRDSHGGF------KDINELKEVHGIGDKT 209 >gi|225848762|ref|YP_002728926.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225644290|gb|ACN99340.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 582 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 72 FMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM--T 126 F+ L V G G + + L T EL++++ +A++ G K ++ Sbjct: 92 FLELMDVPGFGPKTLKRIYQELGISTKEELIKALKDG---RVAKLKGFGPKKVENMLKGL 148 Query: 127 ELKGKAIS 134 EL K+ Sbjct: 149 ELYEKSKE 156 >gi|52786737|ref|YP_092566.1| hypothetical protein BLi03006 [Bacillus licheniformis ATCC 14580] gi|163119581|ref|YP_080151.2| hypothetical protein BL00334 [Bacillus licheniformis ATCC 14580] gi|52349239|gb|AAU41873.1| YshC [Bacillus licheniformis ATCC 14580] gi|145903091|gb|AAU24513.2| putative DNA polymerase YshC [Bacillus licheniformis ATCC 14580] Length = 571 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 19/138 (13%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L + G+G + + L A L E+ Q + +A G K +I Sbjct: 90 LLKLPGLGGKKIAKLYQELGVCDAASLKEACEQQKVQGLA---GFGKKTEEKI------- 139 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATTAVVSVLKKEK- 189 L ++ + A ++ + L L + + + +K Sbjct: 140 ---LQALGEAGKRPERYPIAVALAVADIIEEQLEGLPGLIKFSRAGSLRRAKETVKDLDY 196 Query: 190 -NIADDSQIIRLALRAIS 206 D +++R L +S Sbjct: 197 IMAVTDPELVREGLLKLS 214 >gi|284051767|ref|ZP_06381977.1| helix-hairpin-helix repeat-containing competence protein ComEA [Arthrospira platensis str. Paraca] Length = 551 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 L+S+ G+G +A ++ + L + ++ GI K R Sbjct: 501 ELESLPGIGPGLAQRIIEARSQQPFTS---LDDV---TRVSGIGPKTIER 544 >gi|257888173|ref|ZP_05667826.1| helicase RecD/TraA [Enterococcus faecium 1,141,733] gi|257824227|gb|EEV51159.1| helicase RecD/TraA [Enterococcus faecium 1,141,733] Length = 856 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A + + EL G K I+ SV++Q ++ A Sbjct: 88 ANGIVAYLSSEKFPGIGKKTAEK-VVELLGEDAIEKIIADPSVLKQIAGLTKPKREMLAE 146 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171 >gi|240103390|ref|YP_002959699.1| Radical SAM protein, elongator protein 3/MiaB/NifB related [Thermococcus gammatolerans EJ3] gi|239910944|gb|ACS33835.1| Radical SAM protein, elongator protein 3/MiaB/NifB related [Thermococcus gammatolerans EJ3] Length = 581 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 16/24 (66%) Query: 102 IILQNSKVIAQIPGISMKIASRIM 125 + ++ KV+ IPGI K A+RI+ Sbjct: 529 VNRESPKVLQLIPGIGKKTATRIL 552 >gi|209525765|ref|ZP_03274301.1| helix-hairpin-helix motif [Arthrospira maxima CS-328] gi|209493738|gb|EDZ94057.1| helix-hairpin-helix motif [Arthrospira maxima CS-328] Length = 551 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 L+S+ G+G +A ++ + L + ++ GI K R Sbjct: 501 ELESLPGIGPGLAQRIIEARSQQPFTS---LDDV---TRVSGIGPKTIER 544 >gi|269102847|ref|ZP_06155544.1| excinuclease ABC subunit C [Photobacterium damselae subsp. damselae CIP 102761] gi|268162745|gb|EEZ41241.1| excinuclease ABC subunit C [Photobacterium damselae subsp. damselae CIP 102761] Length = 589 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125 L+ ++GVG + +L + EL + + IA++PGIS+ +A +I+ Sbjct: 536 LEDIEGVGPKRRQALLKYMGGLQELKRASKEE----IAKVPGISLALAEKIV 583 >gi|227552598|ref|ZP_03982647.1| exodeoxyribonuclease V alpha subunit [Enterococcus faecium TX1330] gi|257896936|ref|ZP_05676589.1| helicase RecD/TraA [Enterococcus faecium Com12] gi|293379121|ref|ZP_06625272.1| helicase, RecD/TraA family [Enterococcus faecium PC4.1] gi|227178224|gb|EEI59196.1| exodeoxyribonuclease V alpha subunit [Enterococcus faecium TX1330] gi|257833501|gb|EEV59922.1| helicase RecD/TraA [Enterococcus faecium Com12] gi|292642262|gb|EFF60421.1| helicase, RecD/TraA family [Enterococcus faecium PC4.1] Length = 856 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 103 ILQNSKVIA--QIPGISMKIASRIMTELKG-----KAISLSSVVQQDMSCVNKEQ---AH 152 ++ + PGI K A + + EL G K I+ SV++Q ++ A Sbjct: 88 ANGIVAYLSSEKFPGIGKKTAEK-VVELLGEDAIEKIIADPSVLKQIAGLTKPKREMLAE 146 Query: 153 ICSMPSFAINAISALVNLGYGQDQA 177 + I L G+G A Sbjct: 147 TIRLNHGMDQVIMGLNRYGFGSQLA 171 >gi|119370545|sp|P57882|UVRC_PASMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 608 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 10/98 (10%) Query: 38 LGKIGDFCTLFVETHMRQDQIR--LFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSRI 93 L D L + H+R + + + G +Q F+ L+SV+GVGA+ +L + Sbjct: 516 LHLPSDHLALHLIQHIRDESHQHAISG-HRKKRQQAFLQSGLESVEGVGAKRRQTLLKYL 574 Query: 94 T-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + ++ + + IA +PGIS +A RI L+ Sbjct: 575 GGMQGVKKATLDE----IASVPGISKALAERIYDALRD 608 >gi|94500849|ref|ZP_01307375.1| recombination protein RecR [Oceanobacter sp. RED65] gi|94426968|gb|EAT11950.1| recombination protein RecR [Oceanobacter sp. RED65] Length = 199 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 90 LSRITA--TELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVN 147 ++ ++ ELVE+ + +PG+ K A R+ L K S + + +S Sbjct: 1 MASLSPLINELVEA--------LTILPGVGPKSAQRLALHLLEKDQSGAHRLVGMLSKAL 52 Query: 148 KEQAH 152 E H Sbjct: 53 DEVGH 57 >gi|15602722|ref|NP_245794.1| excinuclease ABC subunit C [Pasteurella multocida subsp. multocida str. Pm70] gi|12721167|gb|AAK02941.1| UvrC [Pasteurella multocida subsp. multocida str. Pm70] Length = 611 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 10/98 (10%) Query: 38 LGKIGDFCTLFVETHMRQDQIR--LFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSRI 93 L D L + H+R + + + G +Q F+ L+SV+GVGA+ +L + Sbjct: 519 LHLPSDHLALHLIQHIRDESHQHAISG-HRKKRQQAFLQSGLESVEGVGAKRRQTLLKYL 577 Query: 94 T-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 + ++ + + IA +PGIS +A RI L+ Sbjct: 578 GGMQGVKKATLDE----IASVPGISKALAERIYDALRD 611 >gi|332534903|ref|ZP_08410723.1| competence protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035638|gb|EGI72128.1| competence protein [Pseudoalteromonas haloplanktis ANT/505] Length = 98 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 17/31 (54%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIM 125 SI +++++A++PGI K A I+ Sbjct: 33 PQAEAISINNADAEMLAKLPGIGKKKAQAIV 63 >gi|152998915|ref|YP_001364596.1| ERCC4 domain-containing protein [Shewanella baltica OS185] gi|160873501|ref|YP_001552817.1| ERCC4 domain-containing protein [Shewanella baltica OS195] gi|151363533|gb|ABS06533.1| ERCC4 domain protein [Shewanella baltica OS185] gi|160859023|gb|ABX47557.1| ERCC4 domain protein [Shewanella baltica OS195] gi|315265730|gb|ADT92583.1| ERCC4 domain protein [Shewanella baltica OS678] Length = 212 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +Q F+ LQS+ VG ++A +L + VE+++ + + + Q+ GI AS+I Sbjct: 155 QQLFI-LQSLPEVGPKLANKLLCHFAS---VEAVVTASEEALMQVGGIGKNKASKI 206 >gi|317120923|ref|YP_004100926.1| DNA replication and repair protein RecR [Thermaerobacter marianensis DSM 12885] gi|315590903|gb|ADU50199.1| DNA replication and repair protein RecR [Thermaerobacter marianensis DSM 12885] Length = 199 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCV 146 + ++PGI K A R+ L + + +L+ + Q + V Sbjct: 11 IAELEKLPGIGPKTAQRLAYHLLFRPQDEVRALAEAMVQARASV 54 >gi|299144371|ref|ZP_07037451.1| competence protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518856|gb|EFI42595.1| competence protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 196 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 102 IILQNSKVIAQIPGISMKIASRIM 125 I + +++ +PG+ K A +I+ Sbjct: 138 INTADMQMLTSLPGVGEKTAKKII 161 >gi|297182625|gb|ADI18783.1| recombinational DNA repair protein (recf pathway) [uncultured SAR11 cluster bacterium HF4000_37C10] Length = 201 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 22/40 (55%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146 K+I+++PG+ K A RI+ +L L+ + ++ V Sbjct: 13 IKIISKLPGLGPKSAKRIVLKLINNRDELAKPLVNTLAQV 52 >gi|229591980|ref|YP_002874099.1| recombination protein RecR [Pseudomonas fluorescens SBW25] gi|259563703|sp|C3JXP7|RECR_PSEFS RecName: Full=Recombination protein recR gi|229363846|emb|CAY51305.1| recombination protein [Pseudomonas fluorescens SBW25] Length = 200 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 + +PG+ K A R+ +L + S + + Q +S H + Sbjct: 11 IDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMTGVGHCRQCRTLTEE 66 >gi|304385154|ref|ZP_07367500.1| exodeoxyribonuclease V alpha subunit [Pediococcus acidilactici DSM 20284] gi|304329348|gb|EFL96568.1| exodeoxyribonuclease V alpha subunit [Pediococcus acidilactici DSM 20284] Length = 836 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 16/84 (19%) Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA---- 166 +Q GI K A +I+ K + + ++ + + S + I + A Sbjct: 119 SQFKGIGKKTAEKIV-----KQLGMDAIDVIKDNAQVLRDIGLSSAQADVIETVLAESNG 173 Query: 167 -------LVNLGYGQDQATTAVVS 183 L +LG A + Sbjct: 174 MEKILIKLADLGISGKTADNVIAK 197 >gi|284048802|ref|YP_003399141.1| helicase, RecD/TraA family [Acidaminococcus fermentans DSM 20731] gi|283953023|gb|ADB47826.1| helicase, RecD/TraA family [Acidaminococcus fermentans DSM 20731] Length = 721 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT---ELK 129 +GVG +A ++ + L ++ + + + ++ GI K A I+T EL+ Sbjct: 93 KGVGPAMAQRIVDQFGEDTLE--VLEKFPERLREVSGIGKKKAEAIITSYGELR 144 >gi|270291441|ref|ZP_06197663.1| RecD/TraA family helicase [Pediococcus acidilactici 7_4] gi|270280287|gb|EFA26123.1| RecD/TraA family helicase [Pediococcus acidilactici 7_4] Length = 836 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 16/84 (19%) Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA---- 166 +Q GI K A +I+ K + + ++ + + S + I + A Sbjct: 119 SQFKGIGKKTAEKIV-----KQLGMDAIDVIKDNAQVLRDIGLSSAQADVIETVLAESNG 173 Query: 167 -------LVNLGYGQDQATTAVVS 183 L +LG A + Sbjct: 174 MEKILIKLADLGISGKTADNVIAK 197 >gi|329937887|ref|ZP_08287369.1| deoxyribonuclease [Streptomyces griseoaurantiacus M045] gi|329302844|gb|EGG46733.1| deoxyribonuclease [Streptomyces griseoaurantiacus M045] Length = 757 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A + L +II + K + ++PG+ K +I Sbjct: 104 VKGIGPVFADRITQHFGIDTL--TIIEEEPKRLIEVPGLGPKRTKKI 148 >gi|121997039|ref|YP_001001826.1| recombination protein RecR [Halorhodospira halophila SL1] gi|171769498|sp|A1WTL2|RECR_HALHL RecName: Full=Recombination protein recR gi|121588444|gb|ABM61024.1| recombination protein RecR [Halorhodospira halophila SL1] Length = 201 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCVN 147 + + ++PG+ K A R+ L + A L+ +Q+ + V Sbjct: 12 VEGLRRLPGVGAKTAQRMALHLLQRDRDGARQLADALQRAVDGVG 56 >gi|295697533|ref|YP_003590771.1| helicase, RecD/TraA family [Bacillus tusciae DSM 2912] gi|295413135|gb|ADG07627.1| helicase, RecD/TraA family [Bacillus tusciae DSM 2912] Length = 761 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++GVG + A ++ L +I + ++ GI + A +I Sbjct: 87 IRGVGPKTAERLVDHFGQDILR--VIEDEPGRLREVEGIGARKAEQI 131 >gi|197121699|ref|YP_002133650.1| PHP domain protein [Anaeromyxobacter sp. K] gi|196171548|gb|ACG72521.1| PHP domain protein [Anaeromyxobacter sp. K] Length = 592 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 11/99 (11%) Query: 73 MLLQSVQGVGARV--AM-GVLSRITATELVESIILQNSKVIAQIPGISMKIASRI---MT 126 + L V +G + A+ L + EL + + + G K RI + Sbjct: 92 LELLRVPDLGPKKIAALHAALGVASVAELEAACREG---RVRGVKGFGEKTEQRILEGIA 148 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 L + ++ + ++ AH+ ++P A+ Sbjct: 149 RLHAREADRRVLLAEALTAAEPLLAHLRAVPG--AEAVE 185 >gi|126172618|ref|YP_001048767.1| ERCC4 domain-containing protein [Shewanella baltica OS155] gi|125995823|gb|ABN59898.1| ERCC4 domain protein [Shewanella baltica OS155] Length = 212 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +Q F+ LQS+ VG ++A +L + VE+++ + + + Q+ GI AS+I Sbjct: 155 QQLFI-LQSLPEVGPKLANKLLCHFAS---VEAVVTASEEALMQVGGIGKNKASKI 206 >gi|315658134|ref|ZP_07911006.1| competence protein comEA [Staphylococcus lugdunensis M23590] gi|315496463|gb|EFU84786.1| competence protein comEA [Staphylococcus lugdunensis M23590] Length = 226 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V G+G A +L+ S+ + +I GI K ++ Sbjct: 176 LTKVPGIGPSKAKEILNYKEQHGQFTSVDE-----LKKIKGIGEKTFEKL 220 >gi|289550639|ref|YP_003471543.1| Late competence protein ComEA, DNA receptor [Staphylococcus lugdunensis HKU09-01] gi|289180171|gb|ADC87416.1| Late competence protein ComEA, DNA receptor [Staphylococcus lugdunensis HKU09-01] Length = 187 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V G+G A +L+ S+ + +I GI K ++ Sbjct: 137 LTKVPGIGPSKAKEILNYKEQHGQFTSVDE-----LKKIKGIGEKTFEKL 181 >gi|239610211|gb|EEQ87198.1| DNA repair protein RAD1 [Ajellomyces dermatitidis ER-3] Length = 925 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 6/19 (31%), Positives = 14/19 (73%) Query: 109 VIAQIPGISMKIASRIMTE 127 ++ +PG++ K+A R++ E Sbjct: 865 MLQAVPGVTPKLAERLILE 883 >gi|261192729|ref|XP_002622771.1| DNA repair protein RAD1 [Ajellomyces dermatitidis SLH14081] gi|239589253|gb|EEQ71896.1| DNA repair protein RAD1 [Ajellomyces dermatitidis SLH14081] Length = 925 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 6/19 (31%), Positives = 14/19 (73%) Query: 109 VIAQIPGISMKIASRIMTE 127 ++ +PG++ K+A R++ E Sbjct: 865 MLQAVPGVTPKLAERLILE 883 >gi|254456022|ref|ZP_05069451.1| recombination protein RecR [Candidatus Pelagibacter sp. HTCC7211] gi|207083024|gb|EDZ60450.1| recombination protein RecR [Candidatus Pelagibacter sp. HTCC7211] Length = 203 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 K+I+++PG+ K A RI+ +L Sbjct: 11 IKLISKLPGLGPKSAKRIVLKL 32 >gi|127513161|ref|YP_001094358.1| recombination protein RecR [Shewanella loihica PV-4] gi|166221964|sp|A3QF51|RECR_SHELP RecName: Full=Recombination protein recR gi|126638456|gb|ABO24099.1| recombination protein RecR [Shewanella loihica PV-4] Length = 199 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 8/70 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL++ + +PG+ K A R+ +L + + Q +S + H Sbjct: 7 VDELIQ--------SLRCLPGVGPKSAQRMAFQLLERDRKAGHKLAQALSSAMSDVGHCS 58 Query: 155 SMPSFAINAI 164 S +F ++ Sbjct: 59 SCRTFTEESL 68 >gi|37520198|ref|NP_923575.1| exodeoxyribonuclease V alpha chain [Gloeobacter violaceus PCC 7421] gi|35211191|dbj|BAC88570.1| exodeoxyribonuclease V alpha chain [Gloeobacter violaceus PCC 7421] Length = 745 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++GVG A +++ L II + +A++PG+ A RI Sbjct: 107 IKGVGPVTARRIVAHFGLASLE--IIESDCSRLAEVPGVG---AHRI 148 >gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032] gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032] Length = 717 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%) Query: 66 DLDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 +R + +L S++ VG A + + +E+I + + ++ + G+ IA+ Sbjct: 539 ARERDLWRVLVALSIRHVGPTAAQALARHFRS---IEAIDNASEEELSSVDGVGPTIAAS 595 Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL---------GYGQ 174 I +V +A + L L GY + Sbjct: 596 I--------REWFAVDWHREVVRKWAEAGVRMAEEAVAEGPRPLEGLTVVVTGTLSGYSR 647 Query: 175 DQATTAVVS 183 DQA A+ S Sbjct: 648 DQAAEAIQS 656 >gi|296273464|ref|YP_003656095.1| AAA ATPase [Arcobacter nitrofigilis DSM 7299] gi|296097638|gb|ADG93588.1| AAA ATPase [Arcobacter nitrofigilis DSM 7299] Length = 760 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 61 FGFLSDL--DRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 F F + +++ + L V+G+G +VA+ +L + T ELV ++ + + GI Sbjct: 70 FAFDTLELKEQELYFFLTKIVKGIGRKVALELLEKYTEEELVT-VLNDKPEELLNFKGI 127 >gi|255523814|ref|ZP_05390779.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|255512517|gb|EET88792.1| Radical SAM domain protein [Clostridium carboxidivorans P7] Length = 448 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 17/109 (15%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIRLFGFLSDL---DRQW-FMLLQSV 78 V Y Y P+ L +I TL + D +R++GF + ++ F + Sbjct: 250 VYYSAYVPVNNSKNLPEIKTPPTLREHRLYQGDWLLRVYGFKAKELLNEKNPNFDI---- 305 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + + A+ + I + +IPGI ++ A +I+ Sbjct: 306 -NLDPKTTYALNNIHLFPVE-----INRAPYNTLIRIPGIGVRGAYKII 348 >gi|91211132|ref|YP_541118.1| excinuclease ABC subunit C [Escherichia coli UTI89] gi|237705868|ref|ZP_04536349.1| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA] gi|300935887|ref|ZP_07150844.1| excinuclease ABC subunit C [Escherichia coli MS 21-1] gi|119367648|sp|Q1RAM7|UVRC_ECOUT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91072706|gb|ABE07587.1| excinuclease ABC subunit C [Escherichia coli UTI89] gi|226900625|gb|EEH86884.1| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA] gi|294490470|gb|ADE89226.1| excinuclease ABC, C subunit [Escherichia coli IHE3034] gi|300458937|gb|EFK22430.1| excinuclease ABC subunit C [Escherichia coli MS 21-1] gi|307626610|gb|ADN70914.1| excinuclease ABC subunit C [Escherichia coli UM146] gi|315286614|gb|EFU46047.1| excinuclease ABC subunit C [Escherichia coli MS 110-3] gi|323956310|gb|EGB52053.1| excinuclease ABC [Escherichia coli H263] Length = 610 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++G+G + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGIGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|257066251|ref|YP_003152507.1| helicase, RecD/TraA family [Anaerococcus prevotii DSM 20548] gi|256798131|gb|ACV28786.1| helicase, RecD/TraA family [Anaerococcus prevotii DSM 20548] Length = 719 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 F+ +++G+G + A + + I+ + + ++ GI K Sbjct: 81 FLSSGNLKGIGKKTARAIFDVFGKDSVD--IVYNDPDKLLRVDGIGKK 126 >gi|281420173|ref|ZP_06251172.1| recombination protein RecR [Prevotella copri DSM 18205] gi|281405668|gb|EFB36348.1| recombination protein RecR [Prevotella copri DSM 18205] Length = 203 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 96 TELVESIILQNSKVIAQIPGISMKIASRIMT-ELKGKAISLS 136 + +++ + +++PGI K A R++ LK K+ + Sbjct: 3 QQFSSTLLEKAVAEFSKLPGIGRKTALRLVLFMLKRKSEDVE 44 >gi|218558771|ref|YP_002391684.1| excinuclease ABC subunit C [Escherichia coli S88] gi|226695576|sp|B7MCH0|UVRC_ECO45 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|218365540|emb|CAR03267.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli S88] Length = 610 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++G+G + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGIGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|195977787|ref|YP_002123031.1| DNA receptor late competence protein ComEA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974492|gb|ACG62018.1| DNA receptor late competence protein ComEA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 225 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 7/51 (13%) Query: 75 LQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ + G+GA+ A ++ + L++ + ++PGI K ++ Sbjct: 174 LQRISGIGAKRAQDIIDVRESLGGFKS---LED---LRKVPGIGAKTLEKL 218 >gi|117624056|ref|YP_852969.1| excinuclease ABC subunit C [Escherichia coli APEC O1] gi|189038049|sp|A1AC65|UVRC_ECOK1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115513180|gb|ABJ01255.1| excinuclease ABC subunit C [Escherichia coli APEC O1] gi|323952408|gb|EGB48281.1| excinuclease ABC [Escherichia coli H252] Length = 610 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++G+G + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGIGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|325104135|ref|YP_004273789.1| recombination protein RecR [Pedobacter saltans DSM 12145] gi|324972983|gb|ADY51967.1| recombination protein RecR [Pedobacter saltans DSM 12145] Length = 205 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 5/37 (13%) Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 ++ L ++ +++PG+ K A R++ L Sbjct: 2 NFSSKLLENAVEE-----FSKLPGVGKKTALRLVLHL 33 >gi|283769391|ref|ZP_06342290.1| comEA protein [Bulleidia extructa W1219] gi|283104048|gb|EFC05432.1| comEA protein [Bulleidia extructa W1219] Length = 151 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 6/20 (30%), Positives = 13/20 (65%) Query: 106 NSKVIAQIPGISMKIASRIM 125 + K + ++ G+ K+A RI+ Sbjct: 97 DLKELMKLKGVGKKMAQRIL 116 >gi|255327538|ref|ZP_05368605.1| excinuclease ABC subunit C [Rothia mucilaginosa ATCC 25296] gi|255295432|gb|EET74782.1| excinuclease ABC subunit C [Rothia mucilaginosa ATCC 25296] Length = 646 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 75 LQSVQGVG-ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 L V G+G + + + + ++ ++ + + +PGI +A +I+ L Sbjct: 595 LDEVPGLGEVKRSALIKHFGSVAQIKQASAEE----LTAVPGIGPALAQKILAAL 645 >gi|330444498|ref|YP_004377484.1| recombination protein RecR [Chlamydophila pecorum E58] gi|328807608|gb|AEB41781.1| recombination protein RecR [Chlamydophila pecorum E58] Length = 220 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + ++PGI K A ++ EL Sbjct: 30 VSFLKRLPGIGFKTAEKLAFEL 51 >gi|115378513|ref|ZP_01465670.1| recombination protein RecR [Stigmatella aurantiaca DW4/3-1] gi|115364482|gb|EAU63560.1| recombination protein RecR [Stigmatella aurantiaca DW4/3-1] Length = 39 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%) Query: 93 ITATELVESIILQNSKVIAQIPGISMKIASRI 124 +T L + +A++PGI K A R+ Sbjct: 1 MTPDPLNRLVAQ-----LAKLPGIGEKTAQRL 27 >gi|302793005|ref|XP_002978268.1| hypothetical protein SELMODRAFT_108210 [Selaginella moellendorffii] gi|300154289|gb|EFJ20925.1| hypothetical protein SELMODRAFT_108210 [Selaginella moellendorffii] Length = 779 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 D ++ +H S + NA+ +LV LG+ D A A+ + D ++ I Sbjct: 636 DDPDIDVPYSHSSSNANVDENAVQSLVALGFSADLARKALRA---TGGRTEDAAEWI 689 >gi|324113631|gb|EGC07606.1| excinuclease ABC [Escherichia fergusonii B253] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|256750641|ref|ZP_05491527.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256750481|gb|EEU63499.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 615 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 17/99 (17%) Query: 27 IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 I P+ + + +I + F T ++ +++ L ++ G+G + Sbjct: 523 EIDIPMTSKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572 Query: 85 VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 A + + E+ + +++ + ++ G++ K A Sbjct: 573 RAKALYDAFKSIEEIKRA-SVED---LKKVEGMNEKAAQ 607 >gi|224368755|ref|YP_002602916.1| recombination protein RecR [Desulfobacterium autotrophicum HRM2] gi|259563692|sp|C0QAG9|RECR_DESAH RecName: Full=Recombination protein recR gi|223691471|gb|ACN14754.1| RecR [Desulfobacterium autotrophicum HRM2] Length = 199 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 18/44 (40%) Query: 107 SKVIAQIPGISMKIASRI------------------MTELKGKA 132 K ++ +PGI + A R+ + ELK K Sbjct: 12 IKSLSTLPGIGRRTAERLALHILHAPLHEAQTLANDILELKQKV 55 >gi|218548550|ref|YP_002382341.1| excinuclease ABC subunit C [Escherichia fergusonii ATCC 35469] gi|226732391|sp|B7LPF5|UVRC_ESCF3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|218356091|emb|CAQ88708.1| excinuclease UvrABC, endonuclease subunit [Escherichia fergusonii ATCC 35469] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|94309674|ref|YP_582884.1| helix-hairpin-helix DNA-binding, class 1 [Cupriavidus metallidurans CH34] gi|93353526|gb|ABF07615.1| conserved hypothetical protein; putative exported protein [Cupriavidus metallidurans CH34] Length = 126 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGV-LSRITATELVESIILQNSKVIAQIPGISMKIAS 122 LS + +++ + VGA + + + + ++ + + +A + GI A Sbjct: 7 LSLPEISLHRCMRAARRVGAAIGLSMSILAMSPAYADVDVNSADEVALATVKGIGPATAK 66 Query: 123 RIMTELKGKAISLSSV 138 RI E +GK + Sbjct: 67 RIADE-RGKNGAFKDA 81 >gi|327355286|gb|EGE84143.1| DNA repair protein RAD1 [Ajellomyces dermatitidis ATCC 18188] Length = 978 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 6/19 (31%), Positives = 14/19 (73%) Query: 109 VIAQIPGISMKIASRIMTE 127 ++ +PG++ K+A R++ E Sbjct: 918 MLQAVPGVTPKLAERLILE 936 >gi|327404619|ref|YP_004345457.1| Radical SAM domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320127|gb|AEA44619.1| Radical SAM domain protein [Fluviicola taffensis DSM 16823] Length = 419 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 16/109 (14%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLS---DLDRQWFMLLQSV 78 V Y Y P+ + L + L E + +R +GF + D F+ L Sbjct: 252 VYYSGYVPVLADNRLPSLSSQVPLLRENRLYQADWLMRFYGFGAHEILDDSNPFLDL--- 308 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + + A+ L + + ++I ++PGI ++ A +I+ Sbjct: 309 -DIDPKFGWALRNLDLFPLD-----VNKADLEMILRVPGIGVRSAQKIV 351 >gi|325496967|gb|EGC94826.1| excinuclease ABC subunit C [Escherichia fergusonii ECD227] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|225573022|ref|ZP_03781777.1| hypothetical protein RUMHYD_01213 [Blautia hydrogenotrophica DSM 10507] gi|225039619|gb|EEG49865.1| hypothetical protein RUMHYD_01213 [Blautia hydrogenotrophica DSM 10507] Length = 742 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 37/155 (23%) Query: 1 MIGKIKGNIEGL---YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTL---------- 47 M KIKG I+ + ED Y ++ I+ L +G F ++ Sbjct: 1 MQEKIKGYIDHIIFRNEDN--------GYTVFVLIQGKEELTCVGTFQSISPGELIEASG 52 Query: 48 -FVETHMRQDQIRLFGFLSDLD-------RQWFMLLQS--VQGVGARVAMGVLSRITATE 97 +++ H DQ + + + + L S ++G+G +A ++ + Sbjct: 53 KYIQHHTYGDQFQ----IDAYEVKVPEDTQAMERYLGSGAIKGIGPALAARIVKKFGEET 108 Query: 98 LVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 + I+ + + ++++ GIS K A I ++ KA Sbjct: 109 VR--IVEEEPERLSEVKGISEKKAQEIAAQITEKA 141 >gi|220935076|ref|YP_002513975.1| excinuclease ABC subunit C [Thioalkalivibrio sp. HL-EbGR7] gi|219996386|gb|ACL72988.1| excinuclease ABC subunit C [Thioalkalivibrio sp. HL-EbGR7] Length = 609 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 12/84 (14%) Query: 47 LFVETHMRQDQIRLFGFL---SDLDRQWFML---LQSVQGVGARVAMGVLSRITATELVE 100 L + +R + R F R L+ + G+G + +L + Sbjct: 525 LHLIQQIRDEAHR---FAITGHRQRRAKARTASPLEQIPGMGPKRRQQLLKHFGG---LR 578 Query: 101 SIILQNSKVIAQIPGISMKIASRI 124 + ++++PGIS K+A +I Sbjct: 579 GVSRAGVAELSKVPGISRKLAQQI 602 >gi|220916495|ref|YP_002491799.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954349|gb|ACL64733.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 592 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 11/99 (11%) Query: 73 MLLQSVQGVGARV--AM-GVLSRITATELVESIILQNSKVIAQIPGISMKIASRI---MT 126 + L V +G + A+ L + EL + + + G K RI + Sbjct: 92 LELLRVPDLGPKKIAALHAALGVASVAELEAACREG---RVRGVKGFGEKTEQRILEGIA 148 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 L + ++ + ++ AH+ ++P A+ Sbjct: 149 RLHAREADRRVLLAEALTAAEPLLAHLRAVPG--AEAVE 185 >gi|161485798|ref|NP_707800.3| excinuclease ABC subunit C [Shigella flexneri 2a str. 301] gi|161486474|ref|NP_837528.2| excinuclease ABC subunit C [Shigella flexneri 2a str. 2457T] gi|161984952|ref|YP_407566.2| excinuclease ABC subunit C [Shigella boydii Sb227] gi|281601355|gb|ADA74339.1| UvrABC system protein C [Shigella flexneri 2002017] gi|313650130|gb|EFS14543.1| excinuclease ABC, C subunit [Shigella flexneri 2a str. 2457T] gi|332756062|gb|EGJ86415.1| excinuclease ABC, C subunit [Shigella flexneri 4343-70] gi|332757243|gb|EGJ87580.1| excinuclease ABC, C subunit [Shigella flexneri 2747-71] gi|332757471|gb|EGJ87806.1| excinuclease ABC, C subunit [Shigella flexneri K-671] gi|332766644|gb|EGJ96848.1| excinuclease ABC, C subunit [Shigella flexneri 2930-71] gi|333003001|gb|EGK22555.1| excinuclease ABC, C subunit [Shigella flexneri VA-6] gi|333003323|gb|EGK22869.1| excinuclease ABC, C subunit [Shigella flexneri K-218] gi|333004170|gb|EGK23702.1| excinuclease ABC, C subunit [Shigella flexneri K-272] gi|333017660|gb|EGK36972.1| excinuclease ABC, C subunit [Shigella flexneri K-304] gi|333017783|gb|EGK37090.1| excinuclease ABC, C subunit [Shigella flexneri K-227] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|72383245|ref|YP_292600.1| hypothetical protein PMN2A_1409 [Prochlorococcus marinus str. NATL2A] gi|72003095|gb|AAZ58897.1| hypothetical protein PMN2A_1409 [Prochlorococcus marinus str. NATL2A] Length = 99 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 13/61 (21%) Query: 73 MLLQSVQGVGARVAMGVLSR--ITATELVESIILQNSKVIAQIPGIS-------MKIASR 123 L S+ G+GA+ +T ++ + + +++ IPG+ K R Sbjct: 43 ENLTSIPGIGAKNCNNFYEAGYMTPESIISA---SDEELLT-IPGVGISFVKKLRKTLGR 98 Query: 124 I 124 I Sbjct: 99 I 99 >gi|70729289|ref|YP_259026.1| recombination protein RecR [Pseudomonas fluorescens Pf-5] gi|123656866|sp|Q4KFF7|RECR_PSEF5 RecName: Full=Recombination protein recR gi|68343588|gb|AAY91194.1| recombination protein RecR [Pseudomonas fluorescens Pf-5] Length = 200 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 + +PG+ K A R+ +L + S + Q +S + H + + Sbjct: 11 IDALRTLPGVGQKTAQRMALQLLERDRSGGLRLAQALSQAMEGVGHCRQCRTLTED 66 >gi|323948207|gb|EGB44195.1| excinuclease ABC [Escherichia coli H120] Length = 513 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 461 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 512 >gi|323174573|gb|EFZ60194.1| excinuclease ABC, C subunit [Escherichia coli LT-68] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|320184741|gb|EFW59533.1| Excinuclease ABC subunit C [Shigella flexneri CDC 796-83] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|315290293|gb|EFU49671.1| excinuclease ABC subunit C [Escherichia coli MS 153-1] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|313203106|ref|YP_004041763.1| radical sam domain protein [Paludibacter propionicigenes WB4] gi|312442422|gb|ADQ78778.1| Radical SAM domain protein [Paludibacter propionicigenes WB4] Length = 425 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%) Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + ++A + I + I +IPGI +K A I+ Sbjct: 310 IDPKLAWALRH---PEHFPVDINKADYTQILRIPGIGVKTAKMIIV 352 >gi|331683464|ref|ZP_08384065.1| excinuclease ABC subunit C [Escherichia coli H299] gi|331079679|gb|EGI50876.1| excinuclease ABC subunit C [Escherichia coli H299] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|300818664|ref|ZP_07098872.1| excinuclease ABC subunit C [Escherichia coli MS 107-1] gi|300528836|gb|EFK49898.1| excinuclease ABC subunit C [Escherichia coli MS 107-1] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|301029363|ref|ZP_07192460.1| excinuclease ABC subunit C [Escherichia coli MS 196-1] gi|299877789|gb|EFI86000.1| excinuclease ABC subunit C [Escherichia coli MS 196-1] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|260448970|gb|ACX39392.1| excinuclease ABC, C subunit [Escherichia coli DH1] gi|315136550|dbj|BAJ43709.1| UvrABC system protein C [Escherichia coli DH1] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|260868505|ref|YP_003234907.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O111:H- str. 11128] gi|257764861|dbj|BAI36356.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O111:H- str. 11128] gi|323180837|gb|EFZ66377.1| excinuclease ABC, C subunit [Escherichia coli 1180] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|194434969|ref|ZP_03067212.1| excinuclease ABC, C subunit [Shigella dysenteriae 1012] gi|194416804|gb|EDX32930.1| excinuclease ABC, C subunit [Shigella dysenteriae 1012] gi|320178185|gb|EFW53162.1| Excinuclease ABC subunit C [Shigella boydii ATCC 9905] gi|332095447|gb|EGJ00468.1| excinuclease ABC, C subunit [Shigella dysenteriae 155-74] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|5353535|gb|AAD42166.1|AF106003_1 unknown [Streptomyces coelicolor A3(2)] Length = 71 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 20/60 (33%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 I ++PGI K A + L + +V ++ + + +SA Sbjct: 1 IDQICEVPGIGRKTAETVAVALARATPAAPAVNTATGEIMDDDDGAPETTADAPGEPVSA 60 >gi|78189535|ref|YP_379873.1| hypothetical protein Cag_1575 [Chlorobium chlorochromatii CaD3] gi|78171734|gb|ABB28830.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length = 420 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 21/111 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL----DR----QWFML 74 V Y Y P+ + L + L + +R +GF ++ + + F Sbjct: 250 VYYSAYVPVSEDNRLPVLAAPPLLREHRLYQADWLLRFYGFSAEEILSEELPHLDEQFD- 308 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A + I + + ++PGI + A RI+ Sbjct: 309 --------PKTAWALRH---PEFFPVDINRADYATLLRVPGIGVTSAKRIV 348 >gi|110805886|ref|YP_689406.1| excinuclease ABC subunit C [Shigella flexneri 5 str. 8401] gi|30041609|gb|AAP17337.1| excinuclease ABC, subunit C [Shigella flexneri 2a str. 2457T] gi|56383551|gb|AAN43507.2| excinuclease ABC, subunit C [Shigella flexneri 2a str. 301] gi|81245030|gb|ABB65738.1| excinuclease ABC, subunit C [Shigella boydii Sb227] gi|110615434|gb|ABF04101.1| excinuclease ABC, subunit C [Shigella flexneri 5 str. 8401] Length = 588 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587 >gi|51891309|ref|YP_074000.1| excinuclease ABC subunit C [Symbiobacterium thermophilum IAM 14863] gi|81389794|sp|Q67T37|UVRC_SYMTH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|51854998|dbj|BAD39156.1| excinuclease ABC subunit C [Symbiobacterium thermophilum IAM 14863] Length = 629 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 14/94 (14%) Query: 37 CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGVGARVAMGVL 90 L + LF+ +R + R F R+ L V G+G + +L Sbjct: 535 ELPRGSQA--LFLLQRIRDEAHR---FAITYHRKLHRRASTHSRLDDVPGIGPKRKKALL 589 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + +++I + + +AQ+PGI++++A R+ Sbjct: 590 QHFGS---LKAIREASVEEVAQVPGITLELAERV 620 >gi|187730924|ref|YP_001879701.1| excinuclease ABC subunit C [Shigella boydii CDC 3083-94] gi|229557864|sp|B2TXF7|UVRC_SHIB3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|187427916|gb|ACD07190.1| excinuclease ABC, C subunit [Shigella boydii CDC 3083-94] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|217970707|ref|YP_002355941.1| excinuclease ABC subunit C [Thauera sp. MZ1T] gi|217508034|gb|ACK55045.1| excinuclease ABC, C subunit [Thauera sp. MZ1T] Length = 605 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 12/94 (12%) Query: 42 GDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFM---LLQSVQGVGARVAMGVLSRITA 95 G+ L + +R + R F R L+ V GVG +L+ Sbjct: 518 GESAALHLIVEIRDEAHR---FAITGHRAKRAKARVGSKLEDVPGVGPSRRRNLLAAFGG 574 Query: 96 TELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 + V +++ + ++ G+S K+A +I L+ Sbjct: 575 LDGVREATVED---LCRVEGVSRKLAEQIHAALR 605 >gi|153004169|ref|YP_001378494.1| phosphotransferase domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027742|gb|ABS25510.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5] Length = 589 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 11/100 (11%) Query: 73 MLLQSVQGVGARV--AM-GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE-- 127 + L V +G R A+ L T +EL + + + G K RI + Sbjct: 91 LELLQVPDLGPRKIAALHAALGVGTVSELEAACRAG---RVRGVKGFGAKTEERI-LDGL 146 Query: 128 --LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 ++ +A ++ ++ AH+ P+ A++ Sbjct: 147 RRMRERATERRVLLADALAVGEGIVAHLRGEPAALDVAVA 186 >gi|170019749|ref|YP_001724703.1| excinuclease ABC subunit C [Escherichia coli ATCC 8739] gi|193066377|ref|ZP_03047425.1| excinuclease ABC, C subunit [Escherichia coli E22] gi|194429932|ref|ZP_03062442.1| excinuclease ABC, C subunit [Escherichia coli B171] gi|260844317|ref|YP_003222095.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O103:H2 str. 12009] gi|260855893|ref|YP_003229784.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O26:H11 str. 11368] gi|297518834|ref|ZP_06937220.1| excinuclease ABC subunit C [Escherichia coli OP50] gi|300928943|ref|ZP_07144447.1| excinuclease ABC subunit C [Escherichia coli MS 187-1] gi|189038050|sp|B1IZZ1|UVRC_ECOLC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169754677|gb|ACA77376.1| excinuclease ABC, C subunit [Escherichia coli ATCC 8739] gi|192925962|gb|EDV80608.1| excinuclease ABC, C subunit [Escherichia coli E22] gi|194412021|gb|EDX28333.1| excinuclease ABC, C subunit [Escherichia coli B171] gi|195182997|dbj|BAG66563.1| endonuclease subunit of excinuclease UvrABC [Escherichia coli O111:H-] gi|257754542|dbj|BAI26044.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O26:H11 str. 11368] gi|257759464|dbj|BAI30961.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O103:H2 str. 12009] gi|300463097|gb|EFK26590.1| excinuclease ABC subunit C [Escherichia coli MS 187-1] gi|313848667|emb|CAQ32384.2| excinuclease ABC, subunit C; repair of UV damage to DNA, subunit of UvrABC Nucleotide Excision Repair Complex [Escherichia coli BL21(DE3)] gi|323152756|gb|EFZ39028.1| excinuclease ABC, C subunit [Escherichia coli EPECa14] gi|332089646|gb|EGI94748.1| excinuclease ABC, C subunit [Shigella boydii 5216-82] Length = 610 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|331663409|ref|ZP_08364319.1| excinuclease ABC subunit C [Escherichia coli TA143] gi|331059208|gb|EGI31185.1| excinuclease ABC subunit C [Escherichia coli TA143] Length = 610 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|218134221|ref|ZP_03463025.1| hypothetical protein BACPEC_02111 [Bacteroides pectinophilus ATCC 43243] gi|217991596|gb|EEC57602.1| hypothetical protein BACPEC_02111 [Bacteroides pectinophilus ATCC 43243] Length = 496 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 20/112 (17%) Query: 24 VCYIIYCPIRTLSCLGKI--GDFCTLF--VETHMRQDQIRLFGFLS----DLDRQWFMLL 75 V Y + + S L G+ L + +R +GF S + F +L Sbjct: 310 VFYSAFINVNHDSSLPAQPDGEGVPLLREHRLYQADWLMRYYGFKSYELLSEQKPNFNVL 369 Query: 76 QSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + + ++PGI + A RI+ Sbjct: 370 LD-----PKCDWAISHLELFPVE-----INRADYYTLLRVPGIGVTSARRIV 411 >gi|209695581|ref|YP_002263510.1| excinuclease ABC subunit C [Aliivibrio salmonicida LFI1238] gi|226698343|sp|B6EI86|UVRC_ALISL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|208009533|emb|CAQ79825.1| UvrABC system protein C (excinuclease ABC subunit C) [Aliivibrio salmonicida LFI1238] Length = 608 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ ++GVG + +L + EL ++ + + I+++PGIS +A +I Sbjct: 554 TLQHIEGVGPKRRQALLQYLGGLQELKKASVEE----ISKVPGISRSLAEKI 601 >gi|188585553|ref|YP_001917098.1| helix-hairpin-helix motif [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350240|gb|ACB84510.1| helix-hairpin-helix motif [Natranaerobius thermophilus JW/NM-WN-LF] Length = 425 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 4/31 (12%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIM 125 E+ ++ + K++ +IPGI K A RI+ Sbjct: 336 PQEINQA----SKKMLLRIPGIGPKSARRIL 362 >gi|170680797|ref|YP_001743331.1| excinuclease ABC subunit C [Escherichia coli SMS-3-5] gi|226732184|sp|B1LQU4|UVRC_ECOSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|170518515|gb|ACB16693.1| excinuclease ABC, C subunit [Escherichia coli SMS-3-5] Length = 610 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|26248178|ref|NP_754218.1| excinuclease ABC subunit C [Escherichia coli CFT073] gi|38704033|ref|NP_310678.2| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai] gi|89108748|ref|AP_002528.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. W3110] gi|90111354|ref|NP_416423.4| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. MG1655] gi|157155145|ref|YP_001463216.1| excinuclease ABC subunit C [Escherichia coli E24377A] gi|157161384|ref|YP_001458702.1| excinuclease ABC subunit C [Escherichia coli HS] gi|161367590|ref|NP_288374.2| excinuclease ABC subunit C [Escherichia coli O157:H7 EDL933] gi|161986542|ref|YP_310160.2| excinuclease ABC subunit C [Shigella sonnei Ss046] gi|168790333|ref|ZP_02815340.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869] gi|168802973|ref|ZP_02827980.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508] gi|170081561|ref|YP_001730881.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. DH10B] gi|188495148|ref|ZP_03002418.1| excinuclease ABC, C subunit [Escherichia coli 53638] gi|191173286|ref|ZP_03034816.1| excinuclease ABC, C subunit [Escherichia coli F11] gi|193071134|ref|ZP_03052058.1| excinuclease ABC, C subunit [Escherichia coli E110019] gi|194439599|ref|ZP_03071672.1| excinuclease ABC, C subunit [Escherichia coli 101-1] gi|208816990|ref|ZP_03258110.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045] gi|209400940|ref|YP_002271025.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4115] gi|209919334|ref|YP_002293418.1| excinuclease ABC subunit C [Escherichia coli SE11] gi|215487118|ref|YP_002329549.1| excinuclease ABC subunit C [Escherichia coli O127:H6 str. E2348/69] gi|217328731|ref|ZP_03444812.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588] gi|218554496|ref|YP_002387409.1| excinuclease ABC subunit C [Escherichia coli IAI1] gi|218689906|ref|YP_002398118.1| excinuclease ABC subunit C [Escherichia coli ED1a] gi|218695519|ref|YP_002403186.1| excinuclease ABC subunit C [Escherichia coli 55989] gi|218699523|ref|YP_002407152.1| excinuclease ABC subunit C [Escherichia coli IAI39] gi|218705408|ref|YP_002412927.1| excinuclease ABC subunit C [Escherichia coli UMN026] gi|227885661|ref|ZP_04003466.1| excinuclease ABC subunit C [Escherichia coli 83972] gi|238901122|ref|YP_002926918.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli BW2952] gi|253773135|ref|YP_003035966.1| excinuclease ABC subunit C [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254793563|ref|YP_003078400.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. TW14359] gi|256017890|ref|ZP_05431755.1| excinuclease ABC subunit C [Shigella sp. D9] gi|256022429|ref|ZP_05436294.1| excinuclease ABC subunit C [Escherichia sp. 4_1_40B] gi|261227593|ref|ZP_05941874.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255823|ref|ZP_05948356.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7 str. FRIK966] gi|291283090|ref|YP_003499908.1| UvrABC system protein C [Escherichia coli O55:H7 str. CB9615] gi|293405399|ref|ZP_06649391.1| UvrABC system protein C [Escherichia coli FVEC1412] gi|293410272|ref|ZP_06653848.1| excinuclease ABC [Escherichia coli B354] gi|293415222|ref|ZP_06657865.1| excinuclease ABC [Escherichia coli B185] gi|293446295|ref|ZP_06662717.1| excinuclease ABC [Escherichia coli B088] gi|298381043|ref|ZP_06990642.1| UvrABC system protein C [Escherichia coli FVEC1302] gi|300822316|ref|ZP_07102457.1| excinuclease ABC subunit C [Escherichia coli MS 119-7] gi|300899165|ref|ZP_07117444.1| excinuclease ABC subunit C [Escherichia coli MS 198-1] gi|300904798|ref|ZP_07122626.1| excinuclease ABC subunit C [Escherichia coli MS 84-1] gi|300917354|ref|ZP_07134023.1| excinuclease ABC subunit C [Escherichia coli MS 115-1] gi|300925004|ref|ZP_07140928.1| excinuclease ABC subunit C [Escherichia coli MS 182-1] gi|300951536|ref|ZP_07165370.1| excinuclease ABC subunit C [Escherichia coli MS 116-1] gi|300956573|ref|ZP_07168853.1| excinuclease ABC subunit C [Escherichia coli MS 175-1] gi|300982240|ref|ZP_07175952.1| excinuclease ABC subunit C [Escherichia coli MS 200-1] gi|300993977|ref|ZP_07180624.1| excinuclease ABC subunit C [Escherichia coli MS 45-1] gi|301018238|ref|ZP_07182753.1| excinuclease ABC subunit C [Escherichia coli MS 69-1] gi|301050734|ref|ZP_07197592.1| excinuclease ABC subunit C [Escherichia coli MS 185-1] gi|301305253|ref|ZP_07211350.1| excinuclease ABC subunit C [Escherichia coli MS 124-1] gi|301327702|ref|ZP_07220908.1| excinuclease ABC subunit C [Escherichia coli MS 78-1] gi|301645570|ref|ZP_07245499.1| excinuclease ABC subunit C [Escherichia coli MS 146-1] gi|306814263|ref|ZP_07448429.1| excinuclease ABC subunit C [Escherichia coli NC101] gi|307138579|ref|ZP_07497935.1| excinuclease ABC subunit C [Escherichia coli H736] gi|307314181|ref|ZP_07593791.1| excinuclease ABC, C subunit [Escherichia coli W] gi|309795978|ref|ZP_07690391.1| excinuclease ABC subunit C [Escherichia coli MS 145-7] gi|312967114|ref|ZP_07781332.1| excinuclease ABC, C subunit [Escherichia coli 2362-75] gi|312973877|ref|ZP_07788049.1| excinuclease ABC, C subunit [Escherichia coli 1827-70] gi|331642534|ref|ZP_08343669.1| excinuclease ABC subunit C [Escherichia coli H736] gi|331647505|ref|ZP_08348597.1| excinuclease ABC subunit C [Escherichia coli M605] gi|331653319|ref|ZP_08354324.1| excinuclease ABC subunit C [Escherichia coli M718] gi|331657958|ref|ZP_08358920.1| excinuclease ABC subunit C [Escherichia coli TA206] gi|331668606|ref|ZP_08369454.1| excinuclease ABC subunit C [Escherichia coli TA271] gi|331677797|ref|ZP_08378472.1| excinuclease ABC subunit C [Escherichia coli H591] gi|332278917|ref|ZP_08391330.1| excinuclease UvrABC [Shigella sp. D9] gi|67474772|sp|P0A8G0|UVRC_ECOLI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|67474775|sp|P0A8G1|UVRC_ECOL6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|67474776|sp|P0A8G2|UVRC_ECO57 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367838|sp|Q3Z2T7|UVRC_SHISS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038047|sp|A7ZN37|UVRC_ECO24 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038048|sp|A8A1B5|UVRC_ECOHS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226695577|sp|B7NS11|UVRC_ECO7I RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226695578|sp|B7M356|UVRC_ECO8A RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226695579|sp|B7NBQ8|UVRC_ECOLU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226698349|sp|B5YRT7|UVRC_ECO5E RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226698350|sp|B6I0W0|UVRC_ECOSE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229558027|sp|B1X671|UVRC_ECODH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764931|sp|B7UST2|UVRC_ECO27 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764932|sp|B7L8S5|UVRC_ECO55 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764933|sp|B7MWA0|UVRC_ECO81 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|259710338|sp|C4ZQJ1|UVRC_ECOBW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|26108582|gb|AAN80785.1|AE016762_38 Excinuclease ABC subunit C [Escherichia coli CFT073] gi|1736572|dbj|BAA15733.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K12 substr. W3110] gi|87081999|gb|AAC74980.2| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. MG1655] gi|157067064|gb|ABV06319.1| excinuclease ABC, C subunit [Escherichia coli HS] gi|157077175|gb|ABV16883.1| excinuclease ABC, C subunit [Escherichia coli E24377A] gi|169889396|gb|ACB03103.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. DH10B] gi|188490347|gb|EDU65450.1| excinuclease ABC, C subunit [Escherichia coli 53638] gi|189370222|gb|EDU88638.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869] gi|189375231|gb|EDU93647.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508] gi|190906403|gb|EDV66012.1| excinuclease ABC, C subunit [Escherichia coli F11] gi|192955529|gb|EDV86008.1| excinuclease ABC, C subunit [Escherichia coli E110019] gi|194421508|gb|EDX37522.1| excinuclease ABC, C subunit [Escherichia coli 101-1] gi|208731333|gb|EDZ80022.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045] gi|209162340|gb|ACI39773.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4115] gi|209912593|dbj|BAG77667.1| excinuclease ABC subunit C [Escherichia coli SE11] gi|215265190|emb|CAS09579.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O127:H6 str. E2348/69] gi|217318078|gb|EEC26505.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588] gi|218352251|emb|CAU98007.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli 55989] gi|218361264|emb|CAQ98848.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli IAI1] gi|218369509|emb|CAR17276.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli IAI39] gi|218427470|emb|CAR08366.2| excinuclease UvrABC, endonuclease subunit [Escherichia coli ED1a] gi|218432505|emb|CAR13398.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli UMN026] gi|222033654|emb|CAP76395.1| UvrABC system protein C [Escherichia coli LF82] gi|227837234|gb|EEJ47700.1| excinuclease ABC subunit C [Escherichia coli 83972] gi|238861047|gb|ACR63045.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli BW2952] gi|253324179|gb|ACT28781.1| excinuclease ABC, C subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254592963|gb|ACT72324.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7 str. TW14359] gi|284921826|emb|CBG34899.1| UvrABC system protein C [Escherichia coli 042] gi|290762963|gb|ADD56924.1| UvrABC system protein C [Escherichia coli O55:H7 str. CB9615] gi|291323125|gb|EFE62553.1| excinuclease ABC [Escherichia coli B088] gi|291427607|gb|EFF00634.1| UvrABC system protein C [Escherichia coli FVEC1412] gi|291432870|gb|EFF05849.1| excinuclease ABC [Escherichia coli B185] gi|291470740|gb|EFF13224.1| excinuclease ABC [Escherichia coli B354] gi|298278485|gb|EFI19999.1| UvrABC system protein C [Escherichia coli FVEC1302] gi|300297551|gb|EFJ53936.1| excinuclease ABC subunit C [Escherichia coli MS 185-1] gi|300307310|gb|EFJ61830.1| excinuclease ABC subunit C [Escherichia coli MS 200-1] gi|300316620|gb|EFJ66404.1| excinuclease ABC subunit C [Escherichia coli MS 175-1] gi|300357224|gb|EFJ73094.1| excinuclease ABC subunit C [Escherichia coli MS 198-1] gi|300399825|gb|EFJ83363.1| excinuclease ABC subunit C [Escherichia coli MS 69-1] gi|300403312|gb|EFJ86850.1| excinuclease ABC subunit C [Escherichia coli MS 84-1] gi|300406423|gb|EFJ89961.1| excinuclease ABC subunit C [Escherichia coli MS 45-1] gi|300415400|gb|EFJ98710.1| excinuclease ABC subunit C [Escherichia coli MS 115-1] gi|300418839|gb|EFK02150.1| excinuclease ABC subunit C [Escherichia coli MS 182-1] gi|300449211|gb|EFK12831.1| excinuclease ABC subunit C [Escherichia coli MS 116-1] gi|300525199|gb|EFK46268.1| excinuclease ABC subunit C [Escherichia coli MS 119-7] gi|300839459|gb|EFK67219.1| excinuclease ABC subunit C [Escherichia coli MS 124-1] gi|300845746|gb|EFK73506.1| excinuclease ABC subunit C [Escherichia coli MS 78-1] gi|301076102|gb|EFK90908.1| excinuclease ABC subunit C [Escherichia coli MS 146-1] gi|305852422|gb|EFM52873.1| excinuclease ABC subunit C [Escherichia coli NC101] gi|306906150|gb|EFN36668.1| excinuclease ABC, C subunit [Escherichia coli W] gi|307553926|gb|ADN46701.1| excinuclease ABC subunit C [Escherichia coli ABU 83972] gi|308120428|gb|EFO57690.1| excinuclease ABC subunit C [Escherichia coli MS 145-7] gi|309702208|emb|CBJ01524.1| UvrABC system protein C [Escherichia coli ETEC H10407] gi|310332472|gb|EFP99707.1| excinuclease ABC, C subunit [Escherichia coli 1827-70] gi|312288578|gb|EFR16480.1| excinuclease ABC, C subunit [Escherichia coli 2362-75] gi|312946505|gb|ADR27332.1| excinuclease ABC subunit C [Escherichia coli O83:H1 str. NRG 857C] gi|315061213|gb|ADT75540.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli W] gi|315257257|gb|EFU37225.1| excinuclease ABC subunit C [Escherichia coli MS 85-1] gi|315296528|gb|EFU55825.1| excinuclease ABC subunit C [Escherichia coli MS 16-3] gi|315617865|gb|EFU98463.1| excinuclease ABC, C subunit [Escherichia coli 3431] gi|320176084|gb|EFW51152.1| Excinuclease ABC subunit C [Shigella dysenteriae CDC 74-1112] gi|320191886|gb|EFW66533.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. EC1212] gi|320194375|gb|EFW69006.1| Excinuclease ABC subunit C [Escherichia coli WV_060327] gi|320198606|gb|EFW73206.1| Excinuclease ABC subunit C [Escherichia coli EC4100B] gi|320641760|gb|EFX11148.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. G5101] gi|320647120|gb|EFX15953.1| excinuclease ABC subunit C [Escherichia coli O157:H- str. 493-89] gi|320652403|gb|EFX20701.1| excinuclease ABC subunit C [Escherichia coli O157:H- str. H 2687] gi|320658005|gb|EFX25767.1| excinuclease ABC subunit C [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658577|gb|EFX26271.1| excinuclease ABC subunit C [Escherichia coli O55:H7 str. USDA 5905] gi|320668475|gb|EFX35302.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. LSU-61] gi|323378210|gb|ADX50478.1| excinuclease ABC, C subunit [Escherichia coli KO11] gi|323937188|gb|EGB33468.1| excinuclease ABC [Escherichia coli E1520] gi|323940424|gb|EGB36615.1| excinuclease ABC [Escherichia coli E482] gi|323961962|gb|EGB57561.1| excinuclease ABC [Escherichia coli H489] gi|323972724|gb|EGB67925.1| excinuclease ABC [Escherichia coli TA007] gi|323977907|gb|EGB72993.1| excinuclease ABC [Escherichia coli TW10509] gi|324007283|gb|EGB76502.1| excinuclease ABC subunit C [Escherichia coli MS 57-2] gi|324013556|gb|EGB82775.1| excinuclease ABC subunit C [Escherichia coli MS 60-1] gi|324017948|gb|EGB87167.1| excinuclease ABC subunit C [Escherichia coli MS 117-3] gi|324118967|gb|EGC12856.1| excinuclease ABC [Escherichia coli E1167] gi|326342319|gb|EGD66100.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. 1044] gi|326344826|gb|EGD68573.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. 1125] gi|330911720|gb|EGH40230.1| excinuclease ABC subunit C [Escherichia coli AA86] gi|331039332|gb|EGI11552.1| excinuclease ABC subunit C [Escherichia coli H736] gi|331043229|gb|EGI15367.1| excinuclease ABC subunit C [Escherichia coli M605] gi|331049417|gb|EGI21489.1| excinuclease ABC subunit C [Escherichia coli M718] gi|331056206|gb|EGI28215.1| excinuclease ABC subunit C [Escherichia coli TA206] gi|331063800|gb|EGI35711.1| excinuclease ABC subunit C [Escherichia coli TA271] gi|331074257|gb|EGI45577.1| excinuclease ABC subunit C [Escherichia coli H591] gi|332101269|gb|EGJ04615.1| excinuclease UvrABC [Shigella sp. D9] gi|332343638|gb|AEE56972.1| excinuclease ABC, C subunit UvrC [Escherichia coli UMNK88] Length = 610 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|291514455|emb|CBK63665.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif [Alistipes shahii WAL 8301] Length = 419 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 17/110 (15%) Query: 24 VCYIIYCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQS 77 V Y + P+ L + D L E + +R +GF ++ ++ + L Sbjct: 252 VYYSGFIPVNPYDKRLPAL-DKAPLVRENRLYQADWLMRFYGFRAEEIADEQTPRLDL-- 308 Query: 78 VQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + ++A + + ++ + + + + ++PGI +K A R++ Sbjct: 309 --DIDPKLAWALRNPAFFPVDVNRA----DYEALLRVPGIGVKSA-RLIV 351 >gi|253746350|gb|EET01702.1| Hypothetical protein GL50581_1058 [Giardia intestinalis ATCC 50581] Length = 1500 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 19/36 (52%) Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 A+G+ ++ +L ++I N ++ + G+ K A Sbjct: 373 AVGIFQALSRDDLADAIEQGNKAILDNLKGVGSKAA 408 >gi|43290|emb|CAA27329.1| unnamed protein product [Escherichia coli] Length = 588 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587 >gi|25300658|pir||C90960 excinuclease ABC subunit C [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25300671|pir||D85808 excinuclease ABC, chain C - Escherichia coli (strain O157:H7, substrain EDL933) gi|12516011|gb|AAG56928.1|AE005414_5 excinuclease ABC, subunit C; repair of UV damage to DNA [Escherichia coli O157:H7 str. EDL933] gi|13362119|dbj|BAB36074.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai] gi|73855218|gb|AAZ87925.1| excinuclease ABC, subunit C [Shigella sonnei Ss046] gi|209767058|gb|ACI81841.1| excinuclease ABC subunit C [Escherichia coli] gi|209767060|gb|ACI81842.1| excinuclease ABC subunit C [Escherichia coli] gi|209767062|gb|ACI81843.1| excinuclease ABC subunit C [Escherichia coli] gi|209767064|gb|ACI81844.1| excinuclease ABC subunit C [Escherichia coli] gi|209767066|gb|ACI81845.1| excinuclease ABC subunit C [Escherichia coli] gi|281178975|dbj|BAI55305.1| excinuclease ABC subunit C [Escherichia coli SE15] Length = 588 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587 >gi|254161967|ref|YP_003045075.1| excinuclease ABC subunit C [Escherichia coli B str. REL606] gi|253973868|gb|ACT39539.1| excinuclease ABC subunit C [Escherichia coli B str. REL606] gi|253978062|gb|ACT43732.1| excinuclease ABC subunit C [Escherichia coli BL21(DE3)] gi|323158604|gb|EFZ44618.1| excinuclease ABC, C subunit [Escherichia coli E128010] Length = 588 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587 >gi|124027693|ref|YP_001013013.1| hypothetical protein Hbut_0815 [Hyperthermus butylicus DSM 5456] gi|123978387|gb|ABM80668.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456] Length = 273 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%) Query: 110 IAQIPGISMKIASRIMTELKGK 131 + ++PGI + A RI+ E + K Sbjct: 218 LLRVPGIGPRTARRIV-EFREK 238 >gi|298249593|ref|ZP_06973397.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963] gi|297547597|gb|EFH81464.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963] Length = 757 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++G+G A +++ L II Q S + ++PGI A +I Sbjct: 110 IKGIGPVTAKRIVAHFQLDTLE--IIEQASARLVEVPGIGASRAQKI 154 >gi|258591953|emb|CBE68258.1| exported protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 134 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 12/24 (50%) Query: 102 IILQNSKVIAQIPGISMKIASRIM 125 I + + +PGI +A RI+ Sbjct: 75 INHADIAALQTLPGIGPTLAQRII 98 >gi|283785658|ref|YP_003365523.1| UvrABC system protein C [Citrobacter rodentium ICC168] gi|282949112|emb|CBG88719.1| UvrABC system protein C [Citrobacter rodentium ICC168] Length = 610 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|226947391|ref|YP_002802482.1| helicase, RecD/TraA family [Clostridium botulinum A2 str. Kyoto] gi|226841096|gb|ACO83762.1| helicase, RecD/TraA family [Clostridium botulinum A2 str. Kyoto] Length = 744 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 + G+G A ++ + L I+ N + + +I GI K Sbjct: 88 ISGIGPVTAKKIVKKFGEETLN--ILDSNIERLTEIEGIGKKKIE 130 >gi|161502932|ref|YP_001570044.1| excinuclease ABC subunit C [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864279|gb|ABX20902.1| hypothetical protein SARI_00991 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 607 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 554 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 606 >gi|114565608|ref|YP_752762.1| recombination protein RecR [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122319210|sp|Q0B0W3|RECR_SYNWW RecName: Full=Recombination protein recR gi|114336543|gb|ABI67391.1| DNA replication and repair protein RecR [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 197 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 6/20 (30%), Positives = 10/20 (50%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + ++PGI K A R+ Sbjct: 11 IDQLLKLPGIGPKTAQRLAL 30 >gi|325125542|gb|ADY84872.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 150 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 106 NSKVIAQIPGISMKIASRIMTELKG 130 + +++ IPGI A RI++EL Sbjct: 9 DLEILTSIPGIGENTALRIISELGD 33 >gi|212634564|ref|YP_002311089.1| recombination protein RecR [Shewanella piezotolerans WP3] gi|226739008|sp|B8CN00|RECR_SHEPW RecName: Full=Recombination protein recR gi|212556048|gb|ACJ28502.1| Recombination protein RecR [Shewanella piezotolerans WP3] Length = 199 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL++ + +PG+ K A R+ +L + S + + E H Sbjct: 7 VDELIQ--------SLKCLPGVGPKSAQRMAFQLLERDRKAGSKLADSLGKAMSEVGHCQ 58 Query: 155 SMPSFAIN 162 S +F Sbjct: 59 SCRTFTEE 66 >gi|167041264|gb|ABZ06020.1| putative Toprim domain protein [uncultured marine microorganism HF4000_005D21] gi|167045769|gb|ABZ10415.1| putative Toprim domain protein [uncultured marine bacterium HF4000_APKG3108] Length = 201 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146 K+IA++PG+ K A RI+ +L L+ + ++ V Sbjct: 13 IKIIAKLPGLGPKSAKRIVLKLINNREELAKPLVNTLAQV 52 >gi|330980421|gb|EGH78524.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 607 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|319956177|ref|YP_004167440.1| excinuclease ABC subunit c [Nitratifractor salsuginis DSM 16511] gi|319418581|gb|ADV45691.1| Excinuclease ABC subunit C [Nitratifractor salsuginis DSM 16511] Length = 600 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 14/94 (14%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 L L ++ D + T+ R DRQ L +G+G +L Sbjct: 520 LQWLQRLRDEAHRYAITYHRNK-------KRREDRQVA--LLQTKGIGPATLKKLLDCFG 570 Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 ++I + + ++ + +A R++ L Sbjct: 571 T---FKAIEKADFNTLQKV--VGPTMAKRLIESL 599 >gi|182414624|ref|YP_001819690.1| phosphotransferase domain-containing protein [Opitutus terrae PB90-1] gi|177841838|gb|ACB76090.1| PHP domain protein [Opitutus terrae PB90-1] Length = 621 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 6/61 (9%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L + GVG + + L + L + +A G K +I+ +K Sbjct: 93 ELLQIPGVGPKKIKVLHEQLGVVDIASLAAACADGRVAALA---GFGAKTQEKIVAGIKN 149 Query: 131 K 131 + Sbjct: 150 R 150 >gi|170726148|ref|YP_001760174.1| recombination protein RecR [Shewanella woodyi ATCC 51908] gi|238688704|sp|B1KNK2|RECR_SHEWM RecName: Full=Recombination protein recR gi|169811495|gb|ACA86079.1| recombination protein RecR [Shewanella woodyi ATCC 51908] Length = 199 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 8/70 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL++ + +PG+ K A R+ +L + + +S + H Sbjct: 7 VDELIQ--------SLKCLPGVGPKSAQRMAFQLLERDRKAGQSLASALSSAMSDVGHCQ 58 Query: 155 SMPSFAINAI 164 + +F + Sbjct: 59 ACRTFTEETL 68 >gi|330970024|gb|EGH70090.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aceris str. M302273PT] Length = 607 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|302189905|ref|ZP_07266578.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae 642] Length = 607 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|296284355|ref|ZP_06862353.1| excinuclease ABC subunit C [Citromicrobium bathyomarinum JL354] Length = 651 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G +L V + L + + + PGIS +A +I Sbjct: 598 LDEIPGIGPARKRALLLHFGTAGKVRAAALDD---LKRAPGISDAVAQQI 644 >gi|59712233|ref|YP_205009.1| excinuclease ABC subunit C [Vibrio fischeri ES114] gi|75353751|sp|Q5E4C5|UVRC_VIBF1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|59480334|gb|AAW86121.1| excinuclease UvrABC, endonuclease subunit [Vibrio fischeri ES114] Length = 608 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ GVG + +L + EL + + + IA++PGIS +A +I Sbjct: 554 TLQNIDGVGPKRRQALLQYLGGLQELKSASVEE----IAKVPGISHSLAEKI 601 >gi|330808751|ref|YP_004353213.1| uvrABC system protein C [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376859|gb|AEA68209.1| uvrABC system protein C [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 607 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIEE----IAKAPGISKKLAESI 600 >gi|146296053|ref|YP_001179824.1| radical SAM domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409629|gb|ABP66633.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 415 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 14/107 (13%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDL--DRQWFMLLQSVQG 80 V Y Y P+ + K+ L + IR++ F +D ++ + L+ Sbjct: 239 VYYSAYTPVNEDPRILKVEKPPLLREHRLYQADWLIRVYNFSADELFEKDENLDLE---- 294 Query: 81 VGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 V +V A+ L + + N + + ++PGI +K A RI+ Sbjct: 295 VDPKVMWALRHLDKFPVE-----VNKANYEELIRVPGIGIKSARRII 336 >gi|317121677|ref|YP_004101680.1| PHP domain protein [Thermaerobacter marianensis DSM 12885] gi|315591657|gb|ADU50953.1| PHP domain protein [Thermaerobacter marianensis DSM 12885] Length = 675 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 31/132 (23%) Query: 75 LQSVQGVGARVA------MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LQ++ G+G +A S EL + + + IPG+ + A+R+ EL Sbjct: 74 LQTLPGIGPAIAGKIRDFYATGSTRLLDELRRRVPAG-VQNLLAIPGLGPRTAARLYHEL 132 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT---AVVSVL 185 ++ A ++ ++AL LG + +A A+ + Sbjct: 133 ----------------GIDSPAALRDALDDGR---VAALPGLG--EARARKLREALDRLD 171 Query: 186 KKEKNIADDSQI 197 ++ + + Sbjct: 172 REGPRLTLGEAL 183 >gi|167036996|ref|YP_001664574.1| excinuclease ABC subunit C [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115414|ref|YP_004185573.1| excinuclease ABC subunit C [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|229557871|sp|B0K791|UVRC_THEP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|166855830|gb|ABY94238.1| excinuclease ABC, C subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928505|gb|ADV79190.1| excinuclease ABC, C subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 615 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 17/99 (17%) Query: 27 IIYCPIRT--LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 I P+ + + +I + F T ++ +++ L ++ G+G + Sbjct: 523 EIDIPMTSKAFRLIAQIQEEAHRFAITFHKE----------KQSKRFKSELLNIPGIGEK 572 Query: 85 VAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 A + + E+ + +++ + ++ G++ K A Sbjct: 573 RAKALYDAFKSIEEIKRA-SVED---LKKVEGMNEKAAQ 607 >gi|66046127|ref|YP_235968.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae B728a] gi|76803829|sp|Q52377|UVRC_PSEU2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|63256834|gb|AAY37930.1| Excinuclease ABC, C subunit [Pseudomonas syringae pv. syringae B728a] Length = 607 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|313902765|ref|ZP_07836162.1| DNA replication and repair protein RecR [Thermaerobacter subterraneus DSM 13965] gi|313466885|gb|EFR62402.1| DNA replication and repair protein RecR [Thermaerobacter subterraneus DSM 13965] Length = 199 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 10/18 (55%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++PGI K A R+ Sbjct: 11 IAELEKLPGIGPKTAQRL 28 >gi|281358694|ref|ZP_06245171.1| helicase, RecD/TraA family [Victivallis vadensis ATCC BAA-548] gi|281314820|gb|EFA98856.1| helicase, RecD/TraA family [Victivallis vadensis ATCC BAA-548] Length = 734 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 + G+G + A ++ LV ++ +K + ++PGI K A Sbjct: 97 IPGIGKKTASLIVDYFGDQTLV--VLDNFAKRLEEVPGIGKKKA 138 >gi|206895531|ref|YP_002246756.1| endonuclease III [Coprothermobacter proteolyticus DSM 5265] gi|206738148|gb|ACI17226.1| endonuclease III [Coprothermobacter proteolyticus DSM 5265] Length = 209 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 23/82 (28%) Query: 105 QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 N + + ++PG+ K AS ++ Q V++ + + Sbjct: 98 NNVEDLTELPGVGKKTASMVVL----------GAFGQPAVVVDRHVLRVLNR-------- 139 Query: 165 SALVNLGYGQDQATTAVVSVLK 186 LG+ A A + K Sbjct: 140 -----LGFSFKDADVAEEEIRK 156 >gi|255034995|ref|YP_003085616.1| Radical SAM domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947751|gb|ACT92451.1| Radical SAM domain protein [Dyadobacter fermentans DSM 18053] Length = 418 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 20/111 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDLDRQWFMLLQSVQ-- 79 V Y Y PI S L IG L E + +R +GF +L V Sbjct: 252 VYYSGYIPISNDSRLPVIGSQPPLIRENRLYQADWLMRFYGFKVQE------ILNDVHPN 305 Query: 80 ---GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 V ++ A+ L + I + +I ++PGI + A +I+ Sbjct: 306 LEADVDPKLSWALRNLDQFPVD-----INTADYYMILRVPGIGVASALKIV 351 >gi|289581743|ref|YP_003480209.1| excinuclease ABC, C subunit [Natrialba magadii ATCC 43099] gi|289531296|gb|ADD05647.1| excinuclease ABC, C subunit [Natrialba magadii ATCC 43099] Length = 604 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 21/107 (19%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL-----SDLDRQWFMLLQSVQGVG 82 + P R LS D L + +R + R F + D +L V G+G Sbjct: 509 VIIPDRQLSW---PSDAPHLHLLQRVRDESHR---FAVQYHQTLRD-DVRTVLDDVPGIG 561 Query: 83 ARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIA----SRI 124 +L R + + E+ +++ + + G+ K A R+ Sbjct: 562 PETRKRLLGRFGSVENVREA-SVED---LQSVSGVGEKTARTVKERL 604 >gi|200390430|ref|ZP_03217041.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602875|gb|EDZ01421.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 610 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|254168497|ref|ZP_04875341.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|197622552|gb|EDY35123.1| ERCC4 domain protein [Aciduliprofundum boonei T469] Length = 221 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 SD + + + L S+ +G ++A +L + +E I N + ++ GI K A +I Sbjct: 161 SDEEWKIY-ALSSLPYIGEKIAKALLEHFGS---IEKIARANIVELKKVEGIGNKKARQI 216 >gi|116514410|ref|YP_813316.1| transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093725|gb|ABJ58878.1| Transposase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 150 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 106 NSKVIAQIPGISMKIASRIMTELKG 130 + +++ IPGI A RI++EL Sbjct: 9 DLEILTSIPGIGENTALRIISELGD 33 >gi|71083215|ref|YP_265934.1| recR-like protein [Candidatus Pelagibacter ubique HTCC1062] gi|91762355|ref|ZP_01264320.1| recR-like protein [Candidatus Pelagibacter ubique HTCC1002] gi|123647013|sp|Q4FNA8|RECR_PELUB RecName: Full=Recombination protein recR gi|71062328|gb|AAZ21331.1| recR-like protein [Candidatus Pelagibacter ubique HTCC1062] gi|91718157|gb|EAS84807.1| recR-like protein [Candidatus Pelagibacter ubique HTCC1002] Length = 203 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 K+I+++PG+ K A RI+ +L Sbjct: 11 IKLISKLPGLGPKSAKRIVLKL 32 >gi|330988831|gb|EGH86934.1| excinuclease ABC subunit C [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008144|gb|EGH88201.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 607 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|325000598|ref|ZP_08121710.1| DNA polymerase I [Pseudonocardia sp. P1] Length = 325 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 23/125 (18%) Query: 62 GF---LSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVE------------SIILQ 105 GF ++ DR F L+ V + + + L RI E+ + + + Sbjct: 153 GFQVLITTGDRDAFQLVTEDVTVLYPKRGVSDLGRIDPAEVDKRYGLTPTQYPDFAALRG 212 Query: 106 NSK-VIAQIPGISMKIASRIM------TELKGKAISLSSVVQQDMSCVNKEQAHICSMPS 158 + + IPG+ K A++ + EL + + ++ + Sbjct: 213 DPSDNLPSIPGVGEKTAAKWVREFGSLAELTDRVDEVKGKAGDNLRANLANVLLNRQLTE 272 Query: 159 FAINA 163 + Sbjct: 273 LVRDV 277 >gi|320324326|gb|EFW80405.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str. B076] gi|320328551|gb|EFW84553.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str. race 4] Length = 607 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|294496288|ref|YP_003542781.1| DNA mismatch repair protein MutS [Methanohalophilus mahii DSM 5219] gi|292667287|gb|ADE37136.1| DNA mismatch repair protein MutS domain protein [Methanohalophilus mahii DSM 5219] Length = 700 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATE-LVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L +G ++A +S E + +I+ + I++I G+ + A ++ +++ Sbjct: 1 MQSLVDAPRIGEKMAQRFISHFGCEEDAMAAILRGDIASISEIEGVGRRYAISLVHDVR 59 >gi|289650302|ref|ZP_06481645.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str. 2250] gi|330867008|gb|EGH01717.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890124|gb|EGH22785.1| excinuclease ABC subunit C [Pseudomonas syringae pv. mori str. 301020] Length = 607 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|89889524|ref|ZP_01201035.1| radical SAM domain protein [Flavobacteria bacterium BBFL7] gi|89517797|gb|EAS20453.1| radical SAM domain protein [Flavobacteria bacterium BBFL7] Length = 420 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 26/114 (22%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLD--------RQWFM 73 V Y Y P+ S L IG + E + Q L +GF + + Sbjct: 253 VYYSGYIPVANDSRLPAIGTEVPMMRENRLYQTDWLLRFYGF-NVQEILNDKHQNLDM-- 309 Query: 74 LLQSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + ++ A+ L + I + ++IA++PGI M+ S+I+ Sbjct: 310 ------DIDPKLSWALRNLDQFPVD-----INKADKRMIARVPGIGMRSVSKII 352 >gi|56413139|ref|YP_150214.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362065|ref|YP_002141702.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360622|sp|Q5PI10|UVRC_SALPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229557862|sp|B5BGC1|UVRC_SALPK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56127396|gb|AAV76902.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093542|emb|CAR59004.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 610 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|16760892|ref|NP_456509.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141416|ref|NP_804758.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053517|ref|ZP_03346395.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426360|ref|ZP_03359110.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580419|ref|ZP_03362245.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650332|ref|ZP_03380385.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824068|ref|ZP_06543666.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21264111|sp|Q8Z5T3|UVRC_SALTI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|25300672|pir||AD0749 excinuclease ABC chain C STY2154 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503189|emb|CAD05695.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi] gi|29137043|gb|AAO68607.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 610 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|298486859|ref|ZP_07004915.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158726|gb|EFH99790.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 607 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|71733411|ref|YP_274534.1| excinuclease ABC subunit C [Pseudomonas syringae pv. phaseolicola 1448A] gi|92058693|sp|Q48J96|UVRC_PSE14 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71553964|gb|AAZ33175.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 607 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|322616940|gb|EFY13848.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618180|gb|EFY15072.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625850|gb|EFY22669.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626302|gb|EFY23112.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632717|gb|EFY29462.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639059|gb|EFY35752.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640500|gb|EFY37153.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645991|gb|EFY42508.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649888|gb|EFY46309.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655496|gb|EFY51804.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660274|gb|EFY56512.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662955|gb|EFY59162.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668140|gb|EFY64299.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674100|gb|EFY70194.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675547|gb|EFY71621.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683041|gb|EFY79057.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686735|gb|EFY82713.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195376|gb|EFZ80556.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199267|gb|EFZ84362.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204432|gb|EFZ89438.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207522|gb|EFZ92470.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211847|gb|EFZ96678.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217507|gb|EGA02226.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223585|gb|EGA07900.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231529|gb|EGA15642.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235972|gb|EGA20051.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240542|gb|EGA24585.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245434|gb|EGA29434.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250204|gb|EGA34096.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323255488|gb|EGA39249.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262085|gb|EGA45648.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266208|gb|EGA49698.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270683|gb|EGA54124.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 610 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|168239181|ref|ZP_02664239.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738201|ref|YP_002114979.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|229557863|sp|B4TYW7|UVRC_SALSV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194713703|gb|ACF92924.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288075|gb|EDY27462.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 610 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|161613493|ref|YP_001587458.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189038085|sp|A9MU69|UVRC_SALPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|161362857|gb|ABX66625.1| hypothetical protein SPAB_01210 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 610 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|29831872|ref|NP_826506.1| exodeoxyribonuclease V [Streptomyces avermitilis MA-4680] gi|29608989|dbj|BAC73041.1| putative exodeoxyribonuclease V [Streptomyces avermitilis MA-4680] Length = 758 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A + L II + K + ++PG+ K +I Sbjct: 108 VKGIGPVFADRITQHFGLDTLQ--IIEEEPKRLIEVPGLGPKRTKKI 152 >gi|327473326|gb|EGF18746.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK408] Length = 445 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179 A + + +LK + ++ + N A + ++ L LGY + A Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241 Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207 V+ + K K+ A + IIRLA L+++ Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQSLDS 273 >gi|282162751|ref|YP_003355136.1| family X DNA polymerase [Methanocella paludicola SANAE] gi|282155065|dbj|BAI60153.1| family X DNA polymerase [Methanocella paludicola SANAE] Length = 568 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Query: 70 QWFMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + F ++ V G+G + A+ V L T E + + I ++ G+ K A R + Sbjct: 89 ELFEIM-GVPGIGRKTAIKVHKALGVTTVEEFERAARMH---RIRKLKGMGEK-AERRVL 143 Query: 127 E 127 + Sbjct: 144 D 144 >gi|193214870|ref|YP_001996069.1| recombination protein RecR [Chloroherpeton thalassium ATCC 35110] gi|229890141|sp|B3QYJ4|RECR_CHLT3 RecName: Full=Recombination protein recR gi|193088347|gb|ACF13622.1| recombination protein RecR [Chloroherpeton thalassium ATCC 35110] Length = 205 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%) Query: 110 IAQIPGISMKIASR----IMTELKGKAISLSSVV 139 A++PGI K A R I+ E K K SL+ + Sbjct: 15 FAKLPGIGRKTAQRLTMFILHEEKEKVESLAQAL 48 >gi|204931075|ref|ZP_03221901.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320119|gb|EDZ05324.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 610 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|197248145|ref|YP_002146077.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226698355|sp|B5F2U1|UVRC_SALA4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|197211848|gb|ACH49245.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 610 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|108758594|ref|YP_630174.1| recombination protein RecR [Myxococcus xanthus DK 1622] gi|123247980|sp|Q1DAZ9|RECR_MYXXD RecName: Full=Recombination protein recR gi|108462474|gb|ABF87659.1| recombination protein RecR [Myxococcus xanthus DK 1622] Length = 197 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%) Query: 93 ITATELVESIILQNSKVIAQIPGISMKIASRI 124 +T L + +A++PGI K A R+ Sbjct: 1 MTPDPLNRLVAQ-----LAKLPGIGEKTAQRL 27 >gi|197334859|ref|YP_002156447.1| excinuclease ABC, C subunit [Vibrio fischeri MJ11] gi|197316349|gb|ACH65796.1| excinuclease ABC, C subunit [Vibrio fischeri MJ11] Length = 587 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ GVG + +L + EL + + + IA++PGIS +A +I Sbjct: 533 TLQNIDGVGPKRRQALLQYLGGLQELKSASVEE----IAKVPGISHSLAEKI 580 >gi|149198118|ref|ZP_01875165.1| excinuclease ABC subunit C [Lentisphaera araneosa HTCC2155] gi|149138720|gb|EDM27126.1| excinuclease ABC subunit C [Lentisphaera araneosa HTCC2155] Length = 486 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 15/87 (17%) Query: 51 THMRQDQIRLFGFLSDLDRQWFM------LLQSVQGVGARVAMGVLSRI-TATELVESII 103 H+R + R F + RQ LL + G+G + M +L+ + E+ ++ Sbjct: 405 QHLRDESHR---FAINFHRQLRRKQVANSLLDDIPGIGKKRKMTLLNHFGSVREIRKA-S 460 Query: 104 LQNSKVIAQIPGISMKIASRIMTE-LK 129 Q+ +PG+ K A ++ E LK Sbjct: 461 PQDIA--EAVPGLGEKSA-HMILEYLK 484 >gi|313158744|gb|EFR58131.1| putative DNA modification/repair radical SAM protein [Alistipes sp. HGB5] Length = 419 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 24 VCYIIYCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQS 77 V Y + P+ L + D L E + +R +GF ++ ++ + L+ Sbjct: 252 VYYSGFIPVNPYDKRLPAL-DKAPLVRENRLYQADWLMRFYGFRAEEIADEQTPRLDLE- 309 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + ++A + + + + + ++PG+ +K A R++ Sbjct: 310 ---IDPKLAWALRH---PEFFPVDVNRADYEALLRVPGVGVKSA-RLIV 351 >gi|256851001|ref|ZP_05556390.1| RNA-binding protein [Lactobacillus jensenii 27-2-CHN] gi|260661213|ref|ZP_05862127.1| RNA-binding protein [Lactobacillus jensenii 115-3-CHN] gi|282932046|ref|ZP_06337504.1| conserved virulence factor B [Lactobacillus jensenii 208-1] gi|256616063|gb|EEU21251.1| RNA-binding protein [Lactobacillus jensenii 27-2-CHN] gi|260548150|gb|EEX24126.1| RNA-binding protein [Lactobacillus jensenii 115-3-CHN] gi|281303813|gb|EFA95957.1| conserved virulence factor B [Lactobacillus jensenii 208-1] Length = 292 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 1 MIGKIK-GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50 M+G I+ G + ++ + V GV Y + T + ++GD F+ Sbjct: 1 MLGTIQEGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIY 51 >gi|326622889|gb|EGE29234.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 588 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 535 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 587 >gi|320085436|emb|CBY95217.1| UvrABC system protein C Protein uvrC; Excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 610 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|198244405|ref|YP_002215140.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226698792|sp|B5FRY5|UVRC_SALDC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|197938921|gb|ACH76254.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 610 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|167552827|ref|ZP_02346578.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322660|gb|EDZ10499.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 610 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|56961821|ref|YP_173543.1| recombination protein RecR [Bacillus clausii KSM-K16] gi|73621463|sp|Q5WLZ3|RECR_BACSK RecName: Full=Recombination protein recR gi|56908055|dbj|BAD62582.1| recombinational DNA repair protein RecR [Bacillus clausii KSM-K16] Length = 199 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRI---MTELK 129 + ++PGI K ASR+ + ++K Sbjct: 11 IEGFTRLPGIGPKTASRLAFHVLDMK 36 >gi|288928336|ref|ZP_06422183.1| recombination protein RecR [Prevotella sp. oral taxon 317 str. F0108] gi|288331170|gb|EFC69754.1| recombination protein RecR [Prevotella sp. oral taxon 317 str. F0108] Length = 204 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 16/29 (55%) Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128 +++ + +++PGI K A R++ L Sbjct: 7 SALLEKAVAEFSRLPGIGRKTALRLVLHL 35 >gi|77359784|ref|YP_339359.1| competence protein [Pseudoalteromonas haloplanktis TAC125] gi|76874695|emb|CAI85916.1| conserved protein of unknown function; putative competence protein [Pseudoalteromonas haloplanktis TAC125] Length = 99 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Query: 96 TELVES---IILQNSKVIAQIPGISMKIASRIM 125 ++ ++ I + ++++PGI K A I+ Sbjct: 32 QQVKQAALNINTADVSQLSKLPGIGKKKAQAII 64 >gi|62180519|ref|YP_216936.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583553|ref|YP_002637351.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912481|ref|ZP_04656318.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|75482712|sp|Q57N56|UVRC_SALCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764942|sp|C0Q2A7|UVRC_SALPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|62128152|gb|AAX65855.1| UvrC with UvrAB is a DNA excision repair enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468080|gb|ACN45910.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714995|gb|EFZ06566.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 610 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|327461606|gb|EGF07937.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK1] Length = 445 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179 A + + +LK + ++ + N A + ++ L LGY + A Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241 Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207 V+ + K K+ A + IIRLA L+++ Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQSLDS 273 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 48/176 (27%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYC--PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62 I G + E Y +YC P + + L + D ++ M D L Sbjct: 114 IIGTLAKKAEQK--------GYKVYCMTPDKDFAQL--VSDNIFIYKPARMGNDMEIL-- 161 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL-QN-SKVIAQIPGISMKI 120 G + + ++++ + L + I IPG+ K Sbjct: 162 -------------------GVKEVLAKWEVERVEQVIDILGLWGDAVDNIPGIPGVGEKT 202 Query: 121 ASRIM-------------TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 A ++ ELKGK Q K I P A Sbjct: 203 AKSLIKQYGSMENIIAHSHELKGKLRENIETHAQQGLISKKLATIILDAPVELDEA 258 >gi|297183474|gb|ADI19605.1| recombinational DNA repair protein (recf pathway) [uncultured SAR11 cluster bacterium HF0770_37D02] Length = 201 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 K+I+++PG+ K A RI+ +L Sbjct: 13 IKLISKLPGLGPKSAKRIVLKL 34 >gi|288870968|ref|ZP_06115949.2| radical SAM domain protein [Clostridium hathewayi DSM 13479] gi|288865226|gb|EFC97524.1| radical SAM domain protein [Clostridium hathewayi DSM 13479] Length = 472 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGFLS----DLDRQWFMLLQS 77 V Y + P+ + L + G L + +R +GF + DR F + Sbjct: 280 VFYSAFVPVNQDTSLPALPGGPPLLREHRLYQADWLLRFYGFKASELLTEDRPNFNVFLD 339 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + I + + ++PG+ +K RI+ Sbjct: 340 -----PKCDWALRHLEQFPVE-----INRADYYTLLRVPGMGVKSVKRII 379 >gi|167993514|ref|ZP_02574608.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168462516|ref|ZP_02696447.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194445436|ref|YP_002041212.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471853|ref|ZP_03077837.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197265516|ref|ZP_03165590.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|229557861|sp|B4SW54|UVRC_SALNS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194404099|gb|ACF64321.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194458217|gb|EDX47056.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634256|gb|EDX52608.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197243771|gb|EDY26391.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328434|gb|EDZ15198.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247111|emb|CBG24934.1| Excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993932|gb|ACY88817.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158461|emb|CBW17971.1| UvrABC system protein C [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|321224588|gb|EFX49651.1| Excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130225|gb|ADX17655.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988835|gb|AEF07818.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 610 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|67459163|ref|YP_246787.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2] gi|75536405|sp|Q4ULF1|RS1_RICFE RecName: Full=30S ribosomal protein S1 gi|67004696|gb|AAY61622.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2] Length = 568 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D V++DV G P L ++GD +F+E ++ Sbjct: 42 VKGQVIEIKNDMVIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93 >gi|16765284|ref|NP_460899.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|20141853|sp|O66041|UVRC_SALTY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|16420480|gb|AAL20858.1| UvrC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312912936|dbj|BAJ36910.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 610 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|168244792|ref|ZP_02669724.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451638|ref|YP_002045997.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|229557860|sp|B4T842|UVRC_SALHS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194409942|gb|ACF70161.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336371|gb|EDZ23135.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 610 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|330501400|ref|YP_004378269.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01] gi|328915686|gb|AEB56517.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01] Length = 564 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++ G+G +L+ L++ + +S+ + Q+PGI + AS++ Sbjct: 426 LNLNGLGPGTWSTLLASEQLDGLLDWLEF-DSQRLQQLPGIGPRRASQL 473 >gi|315655489|ref|ZP_07908388.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333] gi|315490144|gb|EFU79770.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333] Length = 693 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 14/86 (16%) Query: 47 LFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQGVGARVAMGVLSRI-TATELV 99 L++ ++R + R F R +L + GVG +L + L Sbjct: 603 LYLLQYLRDESHR---FAISAHRQKRARAMTRSILDAAPGVGPAKQKALLKHFGSVKRLR 659 Query: 100 ESIILQNSKVIAQIPGISMKIASRIM 125 E+ + IA++PG +K A ++ Sbjct: 660 EASAAE----IAEVPGFGLKTAENLV 681 >gi|258574873|ref|XP_002541618.1| hypothetical protein UREG_01134 [Uncinocarpus reesii 1704] gi|237901884|gb|EEP76285.1| hypothetical protein UREG_01134 [Uncinocarpus reesii 1704] Length = 631 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 75 LQSVQ-GVGARVAMGVLS-------RITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 L + G G ++G S I + + +I Q A + G + SR + Sbjct: 432 LIKFKAGTGPVPSLGACSLGEIAASGIQPSNITSAIRSQMISSTAPVSG-AKAGTSREIH 490 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 ELK K + ++ + + + N A +P+ + AL NLG + V S+ K Sbjct: 491 ELKRKVLEKNNGILLNQNPSNSTTAVGTRVPTTRASKAKALENLGMIPED--RKVQSISK 548 Query: 187 KE 188 Sbjct: 549 AN 550 >gi|207856539|ref|YP_002243190.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226698793|sp|B5R110|UVRC_SALEP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|206708342|emb|CAR32645.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 610 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|15679455|ref|NP_276572.1| hypothetical protein MTH1458 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622572|gb|AAB85933.1| unknown [Methanothermobacter thermautotrophicus str. Delta H] Length = 392 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 19/77 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG------VGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +GF S + ++ G + + A + I +L + + I ++P Sbjct: 289 YGF-SPDELRF-------SGGYLDTDLDPKYAAAMDMDIFPVDLESAPYHE----IIRVP 336 Query: 115 GISMKIASRIMTELKGK 131 GI K A RI+ E++ + Sbjct: 337 GIGPKSARRII-EMRSR 352 >gi|330958463|gb|EGH58723.1| excinuclease ABC subunit C [Pseudomonas syringae pv. maculicola str. ES4326] Length = 607 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 600 >gi|325114003|emb|CBZ49561.1| putative transcription elongation factor TFIIS [Neospora caninum Liverpool] Length = 418 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%) Query: 122 SRI--MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 RI + ELK K I + Q D A + + + + AL L Sbjct: 69 ERIERILELK-KIIDRAKPTQDDGQQAGDSGAAVTPLSGVREDVVEALTIL 118 >gi|213024849|ref|ZP_03339296.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 89 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 36 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 88 >gi|205352358|ref|YP_002226159.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226698794|sp|B5R896|UVRC_SALG2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|205272139|emb|CAR36992.1| UvrABC system protein C [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627409|gb|EGE33752.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 610 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 557 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 609 >gi|310819968|ref|YP_003952326.1| Recombination protein [Stigmatella aurantiaca DW4/3-1] gi|309393040|gb|ADO70499.1| Recombination protein [Stigmatella aurantiaca DW4/3-1] Length = 197 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%) Query: 93 ITATELVESIILQNSKVIAQIPGISMKIASRI 124 +T L + +A++PGI K A R+ Sbjct: 1 MTPDPLNRLVAQ-----LAKLPGIGEKTAQRL 27 >gi|290960256|ref|YP_003491438.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260649782|emb|CBG72898.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 753 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A + L II + K + ++PG+ K +I Sbjct: 105 VKGIGPVFADRITQHFGLDTLQ--IIEEEPKRLIEVPGLGPKRTRKI 149 >gi|168823338|ref|ZP_02835338.1| anaerobic glycerol-3-phosphate dehydrogenase subunit A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340448|gb|EDZ27212.1| anaerobic glycerol-3-phosphate dehydrogenase subunit A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 364 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 311 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 363 >gi|167762859|ref|ZP_02434986.1| hypothetical protein BACSTE_01222 [Bacteroides stercoris ATCC 43183] gi|167699199|gb|EDS15778.1| hypothetical protein BACSTE_01222 [Bacteroides stercoris ATCC 43183] Length = 205 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PGI K A R++ L Sbjct: 14 VNEFAKLPGIGRKTAMRLVLHL 35 >gi|163753972|ref|ZP_02161095.1| hypothetical protein KAOT1_20157 [Kordia algicida OT-1] gi|161326186|gb|EDP97512.1| hypothetical protein KAOT1_20157 [Kordia algicida OT-1] Length = 420 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 16/109 (14%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSV 78 V Y Y PI S L +IG + E + +R +GF + + + L Sbjct: 253 VYYSGYVPISYDSRLPQIGTEVPMLRENRLYQTDWLMRFYGFHVNEIVNETHQHLDL--- 309 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + ++ A+ + + + +++A++PG+ MK +I+ Sbjct: 310 -DIDPKLSWALRNIHEFPVD-----VNRADKRMLARVPGLGMKSVYKIL 352 >gi|189345791|ref|YP_001942320.1| hypothetical protein Clim_0246 [Chlorobium limicola DSM 245] gi|189339938|gb|ACD89341.1| conserved hypothetical protein [Chlorobium limicola DSM 245] Length = 420 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 23/112 (20%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR---------QWFM 73 V Y + P+ + L + L + +R +GF S + + F Sbjct: 250 VYYSAFVPVNEDNRLPVLASPPLLREHRLYQADWLLRFYGF-SAEEILSDDAPNLDETFD 308 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + + + I + V+ ++PGI + A RI+ Sbjct: 309 ---------PKTSWALRH---PEFFPVEINRADYAVLLRVPGIGVTSARRIV 348 >gi|46204773|ref|ZP_00049515.2| COG0322: Nuclease subunit of the excinuclease complex [Magnetospirillum magnetotacticum MS-1] Length = 234 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 10/97 (10%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML----LQSVQGVGAR 84 + P RT L D FV +R + R F + R+ + L + G+G Sbjct: 133 FVPGRTPFKLPPR-DPVLYFV-QRLRDEAHR-FAIGTHRARRKREMTRNPLDEIAGIGPT 189 Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 +L V++I + +A+ PG++ A Sbjct: 190 RKRALLHHFGT---VKAIQRAALEDLAKAPGVNAATA 223 >gi|255036664|ref|YP_003087285.1| recombination protein RecR [Dyadobacter fermentans DSM 18053] gi|254949420|gb|ACT94120.1| recombination protein RecR [Dyadobacter fermentans DSM 18053] Length = 204 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128 +I + I+++PGI K A R+ L Sbjct: 7 LIEEAVAEISRLPGIGKKTALRLALHL 33 >gi|210620507|ref|ZP_03292083.1| hypothetical protein CLOHIR_00026 [Clostridium hiranonis DSM 13275] gi|210155317|gb|EEA86323.1| hypothetical protein CLOHIR_00026 [Clostridium hiranonis DSM 13275] Length = 739 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 15/64 (23%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS-MKIAS------------RI 124 ++G+G ++A ++ + L +I + + +I GI K+A +I Sbjct: 88 IKGIGEKMANKIIDKFGVDTLD--VIQNAPERLQEIDGIGKKKVAQIVESYEEDRELRKI 145 Query: 125 MTEL 128 + EL Sbjct: 146 ILEL 149 >gi|167537660|ref|XP_001750498.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771038|gb|EDQ84712.1| predicted protein [Monosiga brevicollis MX1] Length = 2254 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 5/103 (4%) Query: 107 SKVIAQIPGISMK--IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 ++ ++++P + K R M +L + L + + + A Sbjct: 506 AETLSKVPSYTTKLTTLKREMLQLHDRVKKLKKRATKAYTVQQDRLDQHAAKQEQAKKKE 565 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 AL + AVV K+ K +AD+S ++ L ++ Sbjct: 566 EALKA---QPTEEAVAVVQKFKQHKKMADESALLERVLLRLAS 605 >gi|90021698|ref|YP_527525.1| excinuclease ABC subunit C [Saccharophagus degradans 2-40] gi|119367831|sp|Q21J16|UVRC_SACD2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|89951298|gb|ABD81313.1| Excinuclease ABC subunit C [Saccharophagus degradans 2-40] Length = 612 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 18/91 (19%) Query: 43 DFCTLFVETHMRQDQIRLFGFL--------SDLDRQWFMLLQSVQGVGARVAMGVLSRIT 94 D L + +R + R F R +L+ + GVG + +L Sbjct: 524 DSAALHLIQQIRDEAHR---FAITGHKQRRDKKRRT--SVLEGIPGVGPKRRKELLVHFG 578 Query: 95 -ATELVESIILQNSKVIAQIPGISMKIASRI 124 E++ + N +A+ P IS K+A I Sbjct: 579 GLQEVLRA----NVDDLAKAPSISKKMAQEI 605 >gi|332365998|gb|EGJ43754.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK1059] Length = 445 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179 A + + +LK + ++ + N A + ++ L LGY + A Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241 Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207 V+ + K K+ A + IIRLA L+++ Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQSLDS 273 >gi|325287800|ref|YP_004263590.1| Radical SAM domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323254|gb|ADY30719.1| Radical SAM domain protein [Cellulophaga lytica DSM 7489] Length = 439 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 16/109 (14%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL---DRQWFMLLQSV 78 V Y Y PI + L +IG + E + Q L +GF + ++ + L Sbjct: 272 VYYSGYVPISYDTRLPQIGTPVPMLRENRLYQTDWLLRFYGFNIEEILNEQHQHLDL--- 328 Query: 79 QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + ++ A+ + + + ++A+IPG+ MK +I+ Sbjct: 329 -DIDPKLGWALRNMHEFPVD-----VNKADKHMLARIPGLGMKSVYKIL 371 >gi|304389347|ref|ZP_07371312.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327465|gb|EFL94698.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 693 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 14/86 (16%) Query: 47 LFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQGVGARVAMGVLSRI-TATELV 99 L++ ++R + R F R +L + GVG +L + L Sbjct: 603 LYLLQYLRDESHR---FAISAHRQKRARAMTRSILDAAPGVGPAKQKALLRHFGSVKRLR 659 Query: 100 ESIILQNSKVIAQIPGISMKIASRIM 125 E+ + IA++PG +K A ++ Sbjct: 660 EASAAE----IAEVPGFGLKTAENLV 681 >gi|295398769|ref|ZP_06808778.1| competence protein comEA [Aerococcus viridans ATCC 11563] gi|294972983|gb|EFG48801.1| competence protein comEA [Aerococcus viridans ATCC 11563] Length = 281 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +LQ++ G+G + A +++ L E+I + Q+ GI K ++ Sbjct: 229 MLQTLSGIGEKRAADIINYRETNGLFETIDD-----LDQVSGIGEKTMEKL 274 >gi|218289070|ref|ZP_03493307.1| recombination protein RecR [Alicyclobacillus acidocaldarius LAA1] gi|218240895|gb|EED08073.1| recombination protein RecR [Alicyclobacillus acidocaldarius LAA1] Length = 199 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRI---MTELKGKAISLSSVVQQDMSCVNKEQA 151 + +I ++PG+ K A+R+ + E+ + + D+ E A Sbjct: 5 PEPVARAIEH-----FMKLPGVGPKTAARLAFHVLEMSEADVRAFAKALIDLKTGLTECA 59 Query: 152 HICSMPSFAINAI 164 C++ + AI Sbjct: 60 VCCNITEASPCAI 72 >gi|219849482|ref|YP_002463915.1| excinuclease ABC subunit C [Chloroflexus aggregans DSM 9485] gi|219543741|gb|ACL25479.1| excinuclease ABC, C subunit [Chloroflexus aggregans DSM 9485] Length = 653 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L + G+G + +L + + + I + +A +PG++ K A ELK Sbjct: 603 LDEIPGIGPKRKRALLKAFGSIDGIRRASIDE----LAAVPGMTRKAAE----ELK 650 >gi|148656915|ref|YP_001277120.1| von Willebrand factor, type A [Roseiflexus sp. RS-1] gi|148569025|gb|ABQ91170.1| von Willebrand factor, type A [Roseiflexus sp. RS-1] Length = 561 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 14/81 (17%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 ++DV G + + L + +F+E D L F +L Sbjct: 384 AVLDVSG-------SMADEARLEQAKTALRIFIEQLQDDDGFGLTIFSDSA-----TVLT 431 Query: 77 SVQGVGARVA--MGVLSRITA 95 V +G + A + ++ +T Sbjct: 432 PVSPIGPKRAEILNRIAGLTP 452 >gi|297171241|gb|ADI22248.1| nuclease subunit of the excinuclease complex [uncultured Gemmatimonadales bacterium HF0200_36I24] Length = 551 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Query: 47 LFVETHMRQDQIRLFGFLSDLDRQWFM------LLQSVQGVGA-RVAMGVLSRITATELV 99 L V +R + R F +R+ L + G+G + + +L + V Sbjct: 469 LHVLQRIRDEAHR---FAVTYNRKLRRNRTVSSDLSEIPGIGPEKQKLLLLRFGS----V 521 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128 +I N + IA+I G+ + +A RI+T L Sbjct: 522 RAIKSANVEEIAEISGLGLVLADRIITYL 550 >gi|157964625|ref|YP_001499449.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5] gi|157844401|gb|ABV84902.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5] Length = 568 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D +++DV G P L ++GD +F+E ++ Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93 >gi|77459288|ref|YP_348795.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf0-1] gi|92058695|sp|Q3KBQ0|UVRC_PSEPF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|77383291|gb|ABA74804.1| excinuclease uvrABC system protein C [Pseudomonas fluorescens Pf0-1] Length = 607 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIEE----IAKAPGISKKLAESI 600 >gi|89070852|ref|ZP_01158097.1| Predicted DNA-binding protein [Oceanicola granulosus HTCC2516] gi|89043590|gb|EAR49799.1| Predicted DNA-binding protein [Oceanicola granulosus HTCC2516] Length = 413 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 27/97 (27%) Query: 39 GKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG----------VGARVAMG 88 + L+ +R +GF D + G + ++A Sbjct: 277 PPLQREHRLY----QADWLMRFYGFGVDE----------ITGSRADGNLDLEIDPKLAWA 322 Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + R E + + ++ ++PG K RI+ Sbjct: 323 LAHR---EEFPLDVQRADKAMLLRVPGFGTKTVDRIL 356 >gi|293610787|ref|ZP_06693087.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827131|gb|EFF85496.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 420 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%) Query: 29 YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82 Y PI T + L +G L E + +R +GF + ++ + L V Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFQVNEIVNEKHPNLDL----DVD 312 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +++ + + + + ++I ++PGI +K A +I+ Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352 >gi|239948027|ref|ZP_04699780.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis] gi|239922303|gb|EER22327.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis] Length = 568 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D +++DV G P L ++GD +F+E ++ Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93 >gi|54401351|gb|AAV34445.1| predicted endonuclease [uncultured proteobacterium RedeBAC7D11] Length = 217 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 20/93 (21%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL- 104 LF + +D ++L ++ + G+ + A +++ + I Sbjct: 54 ELFKKAQSAKDMLKL------GEQNVYQF-IKTCGLAPKKAKAIIAT------SKIIEEK 100 Query: 105 ------QNSKVIAQIPGISMKIASRIMTELKGK 131 + ++ ++PG+ K AS +++E K Sbjct: 101 HNGKVPNDLAMLEELPGVGHKTASVVVSEFFNK 133 >gi|256787631|ref|ZP_05526062.1| deoxyribonuclease [Streptomyces lividans TK24] gi|289771523|ref|ZP_06530901.1| RecD/TraA family helicase [Streptomyces lividans TK24] gi|289701722|gb|EFD69151.1| RecD/TraA family helicase [Streptomyces lividans TK24] Length = 753 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A + L +II + K + ++PG+ K +I Sbjct: 104 VKGIGPIFADRITQHFGLDTL--TIIEEEPKRLIEVPGLGPKRTKKI 148 >gi|29832833|ref|NP_827467.1| excinuclease ABC subunit C [Streptomyces avermitilis MA-4680] gi|81716929|sp|Q829W8|UVRC_STRAW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|29609954|dbj|BAC74002.1| putative excinuclease ABC subunit C [Streptomyces avermitilis MA-4680] Length = 681 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 23/102 (22%) Query: 38 LGKIGDFCTL-------FVETHMRQDQIRLFGFL-----SDLDRQWFML--LQSVQGVGA 83 L GD L ++ +R + R F + ++ F L V G+G Sbjct: 537 LPDDGDPVVLPRTSEGLYLLQRVRDEAHR---FAITYQRTKRAKR-FRASPLDDVAGLGE 592 Query: 84 RVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 ++ + +L + I Q I ++PGI K A I Sbjct: 593 TRKQALIKHFGSVKKLRSATIDQ----ICEVPGIGRKTAETI 630 >gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5] gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5] Length = 915 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 92 RITATELV--ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 +T ++V ++++ + + +PGI K A++++ E L S++ S K Sbjct: 166 GVTPEQMVDAQALMGDSVDNVPGVPGIGPKGAAQLIAE----FGDLESILAAAASGTMKP 221 Query: 150 QAHICSMPSFAINA 163 S+ ++A A Sbjct: 222 SKRRESLVAYAEEA 235 >gi|307266863|ref|ZP_07548384.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918110|gb|EFN48363.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 303 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 142 EKDLALLDTIPGVGRRTAEQIIAE 165 >gi|21221190|ref|NP_626969.1| deoxyribonuclease [Streptomyces coelicolor A3(2)] gi|6714785|emb|CAB66276.1| putative deoxyribonuclease [Streptomyces coelicolor A3(2)] Length = 753 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A + L +II + K + ++PG+ K +I Sbjct: 104 VKGIGPIFADRITQHFGLDTL--TIIEEEPKRLIEVPGLGPKRTKKI 148 >gi|297566359|ref|YP_003685331.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946] gi|296850808|gb|ADH63823.1| PHP domain protein [Meiothermus silvanus DSM 9946] Length = 576 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 7/55 (12%) Query: 74 LLQSVQGVGARVAMGVLSRIT------ATELVESIILQNSKVIAQIPGISMKIAS 122 L+ + G+G +A + + EL + + +IPG+ K A Sbjct: 54 TLEGIPGIGPDLAAKIQEYLQSGKIAAHEELARKVPAG-VLEVMRIPGVGPKTAQ 107 >gi|313835779|gb|EFS73493.1| recombination protein RecR [Propionibacterium acnes HL037PA2] gi|314928454|gb|EFS92285.1| recombination protein RecR [Propionibacterium acnes HL044PA1] gi|314970148|gb|EFT14246.1| recombination protein RecR [Propionibacterium acnes HL037PA3] gi|328906729|gb|EGG26501.1| putative recombination protein RecR [Propionibacterium sp. P08] Length = 201 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 7/18 (38%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 ++++PGI K A RI Sbjct: 10 IDALSRLPGIGPKGAQRI 27 >gi|294464565|gb|ADE77792.1| unknown [Picea sitchensis] Length = 292 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 + + + AISALV++G+ + A A+ AD Sbjct: 244 VAPTMAESEEAISALVSMGFDRSSAIRALAQARNDINAAAD 284 >gi|294460509|gb|ADE75831.1| unknown [Picea sitchensis] Length = 292 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIAD 193 + + + AISALV++G+ + A A+ AD Sbjct: 244 VAPTMAESEEAISALVSMGFDRSSAIRALAQARNDINAAAD 284 >gi|289579427|ref|YP_003478054.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter italicus Ab9] gi|289579501|ref|YP_003478128.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter italicus Ab9] gi|289529140|gb|ADD03492.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter italicus Ab9] gi|289529214|gb|ADD03566.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter italicus Ab9] Length = 406 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268 >gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216] gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216] Length = 696 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 20/130 (15%) Query: 64 LSDLDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 D+ + +L S++ VG A + R + E +E+ ++ G+ IA Sbjct: 514 HDRKDQPLWRVLVGLSIRHVGPTAARALADRFGSMEAIEAATAEDIA---SAEGVGPTIA 570 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALV-----NL-GYG 173 + E L+ +D+ +E + L +L G+ Sbjct: 571 E-AVVEW------LAVDWHRDVVRKWREAGVRMADERDESTPRTLEGLTIVVTGSLSGFS 623 Query: 174 QDQATTAVVS 183 +D+A AV+S Sbjct: 624 RDEAKEAVLS 633 >gi|288931017|ref|YP_003435077.1| helicase [Ferroglobus placidus DSM 10642] gi|288893265|gb|ADC64802.1| helicase domain protein [Ferroglobus placidus DSM 10642] Length = 761 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + VG +A +L + +E I + + + ++ + K A RI Sbjct: 687 ISNVGPVIAKNLLKEF---QTIERIATASVEELMKVKNVGRKTAERI 730 >gi|229820774|ref|YP_002882300.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333] gi|229566687|gb|ACQ80538.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333] Length = 1194 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 14/71 (19%) Query: 110 IAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS---A 166 +A I GI K A RI+TE + +A ++ A + + + A++ A Sbjct: 957 LAPIRGIGEKTAERIVTE-RDRAP----------FADAQDLARRVRLTAAQLEALATAGA 1005 Query: 167 LVNLGYGQDQA 177 L G + +A Sbjct: 1006 LRCFGTSRREA 1016 >gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2] gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2] Length = 891 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 84 RVAMGVLSRITATELVESI-ILQNSK-VIAQIPGISMKIASRIMTE 127 + A+ +T ++++ + + ++ I +PG+ K A +++ E Sbjct: 158 KRAISDKLGLTPIQVIDMLGLAGDTADNIPGVPGVGPKTAQKLIAE 203 >gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs] gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs] Length = 661 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 36/116 (31%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------------- 74 I+CP +LSC ++ + + +D + + GF Q F Sbjct: 412 IFCP-NSLSCKPQLVSR----IVHYASRDAMDIVGFSEKTAEQLFEELNLRDLADLYEIK 466 Query: 75 ---LQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGISMKIA 121 L + G + A +L I V ++ IP + K A Sbjct: 467 YEDLIKLPRFGDKKARNLLEAIENSKNCKLDSFVYAL---------GIPNVGRKTA 513 >gi|28209847|ref|NP_780791.1| recombination protein RecR [Clostridium tetani E88] gi|73621479|sp|Q899U3|RECR_CLOTE RecName: Full=Recombination protein recR gi|28202282|gb|AAO34728.1| recombination protein recR [Clostridium tetani E88] Length = 198 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 7/20 (35%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + A++PGI K A R+ Sbjct: 12 IEEFAKLPGIGKKTAQRLTL 31 >gi|158316686|ref|YP_001509194.1| RecD/TraA family helicase [Frankia sp. EAN1pec] gi|158112091|gb|ABW14288.1| helicase, RecD/TraA family [Frankia sp. EAN1pec] Length = 744 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 V+G+G R A ++ L + I + + ++PG+ K Sbjct: 100 VKGIGPRFAERIVEHFGVDAL-DVIETE-PARLIEVPGLGPK 139 >gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046] gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046] Length = 679 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 19/115 (16%) Query: 72 FMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM----- 125 F+ ++GVG A + + T L + + + + P + A I+ Sbjct: 517 FIYALGIRGVGETTARMLANTFQTLDALRVA----DIDALKKTPDVGDITAEWIVDFFQA 572 Query: 126 ---TELKGKAIS----LSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLG 171 E+ + ++ + V +N E + S A L LG Sbjct: 573 PHNLEVLDRLLAAGIHWDAPVAPSRQPLNGESWVVTGTLSTMGRDEATQLLQALG 627 >gi|198283701|ref|YP_002220022.1| recombination protein RecR [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667448|ref|YP_002426330.1| recombination protein RecR [Acidithiobacillus ferrooxidans ATCC 23270] gi|226726300|sp|B5EJE1|RECR_ACIF5 RecName: Full=Recombination protein recR gi|226737869|sp|B7JC18|RECR_ACIF2 RecName: Full=Recombination protein recR gi|198248222|gb|ACH83815.1| recombination protein RecR [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519661|gb|ACK80247.1| recombination protein RecR [Acidithiobacillus ferrooxidans ATCC 23270] Length = 199 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCV 146 ++ ++PGI + A RI EL + L++ QQ + V Sbjct: 11 VALLRRLPGIGPRSAQRISYELLVRKRDLMPQLAAAFQQAHAVV 54 >gi|167835380|ref|ZP_02462263.1| TPR domain protein [Burkholderia thailandensis MSMB43] Length = 606 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 163 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + + II AL+A+ Sbjct: 164 QPMLAQELARATGDSRGQAII--ALQAL 189 >gi|289578553|ref|YP_003477180.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter italicus Ab9] gi|289528266|gb|ADD02618.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter italicus Ab9] Length = 406 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268 >gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata] gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata] Length = 713 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 33/185 (17%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD------------ 66 +D+ G Y + + +GD L E+ L GF Sbjct: 469 LDIDGFGYETATALLEAGRVRDVGDVFHLTAESFAE-----LRGFAKKKIDQILRGVEAA 523 Query: 67 LDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + + LL S++ VG A + + + V++I +++ +A + G+ IA+ + Sbjct: 524 RQQPLWRLLVGLSIRHVGPSAARALAREMRS---VDAIAAASTETLAAVDGVGPTIAASV 580 Query: 125 MTELKGKAIS------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 + L + + + I+ + G+ +D AT Sbjct: 581 V----DWFADPRHQDILERIRSGGARFADAGADDGPGPLTGVTVVITGTLA-GWSRDSAT 635 Query: 179 TAVVS 183 AV + Sbjct: 636 EAVQA 640 >gi|212703816|ref|ZP_03311944.1| hypothetical protein DESPIG_01864 [Desulfovibrio piger ATCC 29098] gi|212672784|gb|EEB33267.1| hypothetical protein DESPIG_01864 [Desulfovibrio piger ATCC 29098] Length = 765 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++GVG +A +++ + ++ + + + +I G+ K +I Sbjct: 118 IKGVGEEMAGRIVAAFGTDTIR--VLDEEPERLLKIKGVGKKSFEKI 162 >gi|326389952|ref|ZP_08211515.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus JW 200] gi|325994012|gb|EGD52441.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus JW 200] Length = 406 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268 >gi|325123642|gb|ADY83165.1| hypothetical protein BDGL_002579 [Acinetobacter calcoaceticus PHEA-2] Length = 420 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%) Query: 29 YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82 Y PI T + L +G L E + +R +GF + ++ + L V Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPNLDL----DVD 312 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +++ + + + + ++I ++PGI +K A +I+ Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352 >gi|323705218|ref|ZP_08116794.1| recombination protein RecR [Thermoanaerobacterium xylanolyticum LX-11] gi|323535644|gb|EGB25419.1| recombination protein RecR [Thermoanaerobacterium xylanolyticum LX-11] Length = 199 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 6/22 (27%), Positives = 14/22 (63%), Gaps = 3/22 (13%) Query: 110 IAQIPGISMKIASRI---MTEL 128 ++++PGI K A R+ + ++ Sbjct: 15 LSRLPGIGRKTAQRLAFYILDM 36 >gi|300312972|ref|YP_003777064.1| recombinational DNA repair protein [Herbaspirillum seropedicae SmR1] gi|300075757|gb|ADJ65156.1| rocombinational DNA repair protein [Herbaspirillum seropedicae SmR1] Length = 198 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 4/42 (9%) Query: 109 VIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCV 146 + ++PGI K A R+ L + A LS + + + + Sbjct: 13 SLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTI 54 >gi|239503272|ref|ZP_04662582.1| DNA-binding protein [Acinetobacter baumannii AB900] Length = 420 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%) Query: 29 YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82 Y PI T + L +G L E + +R +GF + ++ + L V Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPNLDL----DVD 312 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +++ + + + + ++I ++PGI +K A +I+ Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352 >gi|284991267|ref|YP_003409821.1| helicase, RecD/TraA family [Geodermatophilus obscurus DSM 43160] gi|284064512|gb|ADB75450.1| helicase, RecD/TraA family [Geodermatophilus obscurus DSM 43160] Length = 754 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 V+G+G R+A ++ L +I + +A++P + K Sbjct: 96 VKGIGPRLAERIVDHFGTDALR--VIEEEPGRLAEVPNLGPK 135 >gi|184159635|ref|YP_001847974.1| DNA-binding protein [Acinetobacter baumannii ACICU] gi|332876120|ref|ZP_08443904.1| putative DNA modification/repair radical SAM protein [Acinetobacter baumannii 6014059] gi|183211229|gb|ACC58627.1| predicted DNA-binding protein with the Helix-hairpin-helix motif [Acinetobacter baumannii ACICU] gi|322509545|gb|ADX04999.1| DNA-binding protein [Acinetobacter baumannii 1656-2] gi|323519565|gb|ADX93946.1| DNA-binding protein [Acinetobacter baumannii TCDC-AB0715] gi|332735738|gb|EGJ66781.1| putative DNA modification/repair radical SAM protein [Acinetobacter baumannii 6014059] Length = 420 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 13/103 (12%) Query: 29 YCPIRTLSC-LGKIGDFCTLFVE--THMRQDQIRLFGFLSDL---DRQWFMLLQSVQGVG 82 Y PI T + L +G L E + +R +GF + ++ + L V Sbjct: 257 YIPINTENNYLPAVGSAPPLLRENRLYQSDWLMRFYGFEVNEIVNEKHPNLDL----DVD 312 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 +++ + + + + ++I ++PGI +K A +I+ Sbjct: 313 PKLSWALRH---PEQFPVDLNRADYQMILRVPGIGVKSAKKIV 352 >gi|295101169|emb|CBK98714.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif [Faecalibacterium prausnitzii L2-6] Length = 452 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 38/130 (29%) Query: 72 FMLLQSVQGVGARVAMGV-----LSRITATELVESIILQNSKVIAQI------------- 113 F +L V G+G + A + LS + EL V+ + Sbjct: 333 FEMLLRVPGIGPKSARRIRDARRLSALGLDELKRI-----GVVLKRAQYFITCRGFSGAH 387 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG RI +++ ++ EQ + + P A+ LV G Sbjct: 388 PGRGSAGRERI----------TRALIDPNVFSAGAEQLSMFAPP-----AVDRLVEQGVP 432 Query: 174 QDQATTAVVS 183 A V Sbjct: 433 PRAAQRMVRE 442 >gi|195941240|ref|ZP_03086622.1| UvrC excinuclease ABC subunit C [Escherichia coli O157:H7 str. EC4024] Length = 318 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 266 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 317 >gi|187734950|ref|YP_001877062.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835] gi|187425002|gb|ACD04281.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835] Length = 375 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 14/86 (16%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM--- 125 R+ + L + G+G M +L + EL I+ S ++ +IPG+ ++A RI Sbjct: 4 REAAIALNLIPGLGPVRIMRLLQVFASPEL---ILESPSSLLMEIPGVGAQLACRISSWR 60 Query: 126 --------TELKGKAISLSSVVQQDM 143 EL A + + V D Sbjct: 61 STVNPYRELELADNAGAAVTTVFDDS 86 >gi|300913858|ref|ZP_07131175.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] gi|300890543|gb|EFK85688.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] Length = 301 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 140 EKDLALLDTIPGVGRRTAEQIIAE 163 >gi|149185958|ref|ZP_01864273.1| excinuclease ABC subunit C [Erythrobacter sp. SD-21] gi|148830519|gb|EDL48955.1| excinuclease ABC subunit C [Erythrobacter sp. SD-21] Length = 655 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G +L V + L + + + PGIS +A +I Sbjct: 601 LDEIPGIGPARKRALLLHFGTAGKVRAAALDD---LKRAPGISAGVAQQI 647 >gi|323253652|gb|EGA37480.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] Length = 83 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 30 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 82 >gi|307267693|ref|ZP_07549146.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917287|gb|EFN47608.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 406 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268 >gi|217964370|ref|YP_002350048.1| ComE operon protein 1 [Listeria monocytogenes HCC23] gi|217333640|gb|ACK39434.1| ComE operon protein 1 [Listeria monocytogenes HCC23] gi|307571065|emb|CAR84244.1| DNA-binding protein, ComEA family [Listeria monocytogenes L99] Length = 200 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 149 LQQVPGIGESKATAIIEHREKEGLFQTIED-----LKNVSGIGEKTVEKL 193 >gi|152992646|ref|YP_001358367.1| hypothetical protein SUN_1053 [Sulfurovum sp. NBC37-1] gi|151424507|dbj|BAF72010.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 476 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 22/37 (59%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104 +++ LL SV+G+G + A ++ + TELV ++ Sbjct: 409 EKKVEKLLTSVEGIGKKKAEKIMDKFDTTELVHALET 445 >gi|51473703|ref|YP_067460.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington] gi|81390060|sp|Q68WL4|RS1_RICTY RecName: Full=30S ribosomal protein S1 gi|51460015|gb|AAU03978.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington] Length = 568 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D +++DV G P L ++GD +F+E ++ Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLSLPEVGDVVEVFIEKIEGRNG 93 >gi|42525063|ref|NP_970443.1| DNA repair and genetic recombination protein [Bdellovibrio bacteriovorus HD100] gi|73621467|sp|Q6MH30|RECR_BDEBA RecName: Full=Recombination protein recR gi|39577274|emb|CAE81097.1| DNA repair and genetic recombination protein [Bdellovibrio bacteriovorus HD100] Length = 204 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 6/15 (40%), Positives = 11/15 (73%) Query: 110 IAQIPGISMKIASRI 124 ++++PGI K A R+ Sbjct: 14 LSRLPGIGPKTAQRL 28 >gi|15604379|ref|NP_220895.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Madrid E] gi|6226091|sp|Q9ZD28|RS1_RICPR RecName: Full=30S ribosomal protein S1 gi|3861071|emb|CAA14971.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Rickettsia prowazekii] gi|292572134|gb|ADE30049.1| 30S ribosomal protein S1 [Rickettsia prowazekii Rp22] Length = 568 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D +++DV G P L ++GD +F+E ++ Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLSLPEVGDVVEVFIEKIEGRNG 93 >gi|332829165|gb|EGK01829.1| recombination protein recR [Dysgonomonas gadei ATCC BAA-286] Length = 207 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Query: 102 IILQN-SKVIAQIPGISMKIASRIMTEL 128 I+L+N A++PGI K A R++ L Sbjct: 8 ILLENAVNEFARLPGIGRKTALRLILHL 35 >gi|260912246|ref|ZP_05918798.1| recombination protein R [Prevotella sp. oral taxon 472 str. F0295] gi|260633680|gb|EEX51818.1| recombination protein R [Prevotella sp. oral taxon 472 str. F0295] Length = 204 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTE-LKGKAISLSSVVQQ 141 +++ + +++PGI K A R++ LK + + S Sbjct: 7 SALLEKAVSEFSRLPGIGRKTALRLVLHLLKTRVEDVESFSSS 49 >gi|213854703|ref|ZP_03382943.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 331 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 278 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 330 >gi|171913023|ref|ZP_02928493.1| endonuclease III [Verrucomicrobium spinosum DSM 4136] Length = 217 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 13/50 (26%) Query: 80 GVGARVAMGVLSRITATELVESIILQ------NS-KVIAQIPGISMKIAS 122 G+G + A + +EL + I+ + ++ + ++PG+ K A Sbjct: 81 GLGPQKAKAI------SELSKIIVREHSGKVPDTLDALEKLPGVGHKTAQ 124 >gi|167036557|ref|YP_001664135.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167036558|ref|YP_001664136.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167036559|ref|YP_001664137.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167036560|ref|YP_001664138.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167036561|ref|YP_001664139.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167037327|ref|YP_001664905.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038866|ref|YP_001661851.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X514] gi|167040932|ref|YP_001663917.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X514] gi|167040933|ref|YP_001663918.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X514] gi|300913548|ref|ZP_07130865.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] gi|300913856|ref|ZP_07131173.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] gi|300913857|ref|ZP_07131174.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] gi|307723437|ref|YP_003903188.1| transposase IS110 family protein [Thermoanaerobacter sp. X513] gi|307725457|ref|YP_003905208.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X513] gi|307725458|ref|YP_003905209.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X513] gi|320114988|ref|YP_004185147.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|320114989|ref|YP_004185148.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|320115743|ref|YP_004185902.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390289|ref|ZP_08211849.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus JW 200] gi|166853106|gb|ABY91515.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X514] gi|166855172|gb|ABY93581.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X514] gi|166855173|gb|ABY93582.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X514] gi|166855391|gb|ABY93799.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166855392|gb|ABY93800.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166855393|gb|ABY93801.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166855394|gb|ABY93802.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166855395|gb|ABY93803.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166856161|gb|ABY94569.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890233|gb|EFK85378.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] gi|300890541|gb|EFK85686.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] gi|300890542|gb|EFK85687.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X561] gi|307580498|gb|ADN53897.1| transposase IS110 family protein [Thermoanaerobacter sp. X513] gi|307582518|gb|ADN55917.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X513] gi|307582519|gb|ADN55918.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter sp. X513] gi|319928079|gb|ADV78764.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319928080|gb|ADV78765.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319928834|gb|ADV79519.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993734|gb|EGD52166.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus JW 200] Length = 406 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268 >gi|330942152|gb|EGH44804.1| excinuclease ABC subunit C [Pseudomonas syringae pv. pisi str. 1704B] Length = 379 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 325 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 372 >gi|291514310|emb|CBK63520.1| helicase, putative, RecD/TraA family [Alistipes shahii WAL 8301] Length = 723 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 V+G+G R A ++ R E ++ I + + + ++P I K Sbjct: 95 VKGIGPRFARAIVQRFGT-ETIDIIETE-IERLYEVPNIGRK 134 >gi|20806579|ref|NP_621750.1| recombinational DNA repair protein [Thermoanaerobacter tengcongensis MB4] gi|24212232|sp|Q8RDI4|RECR_THETN RecName: Full=Recombination protein recR gi|20515021|gb|AAM23354.1| Recombinational DNA repair protein [Thermoanaerobacter tengcongensis MB4] Length = 199 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++++PGI K A R+ Sbjct: 12 IEELSKLPGIGPKTAQRL 29 >gi|327334776|gb|EGE76487.1| recombination protein RecR [Propionibacterium acnes HL097PA1] Length = 201 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 7/18 (38%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 ++++PGI K A RI Sbjct: 10 IDALSRLPGIGPKGAQRI 27 >gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301] gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301] Length = 892 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 92 RITATELV--ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 +T ++V ++++ + + +PGI K A++++ E L S++ S K Sbjct: 143 GVTPEQMVDAQALMGDSVDNVPGVPGIGPKGAAQLIAE----FGDLESILAAAASGTMKP 198 Query: 150 QAHICSMPSFAINA 163 S+ ++A A Sbjct: 199 SKRRESLVAYAEEA 212 >gi|257440048|ref|ZP_05615803.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165] gi|257197400|gb|EEU95684.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165] Length = 465 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 39/142 (27%) Query: 61 FG-FLSDLDRQWFMLLQSVQGVGARVAMGV-----LSRITATELVESIILQNSKVIAQI- 113 +G F D++R F +L V G+G + A + + + EL V+ + Sbjct: 334 YGLFPVDVNRAPFEMLLRVPGIGPKSARRIWHARKQAALGLDELKRM-----GVVLKRAQ 388 Query: 114 ------------PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 PG RI +++ ++ EQ + S P Sbjct: 389 YFITCRGFAGAHPGRGSAGRERI----------TRALIDPNVFSGGVEQLSMFSPP---- 434 Query: 162 NAISALVNLGYGQDQATTAVVS 183 A+ LV G A V Sbjct: 435 -AVDRLVEQGVPPRTAQKMVRE 455 >gi|237800462|ref|ZP_04588923.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023321|gb|EGI03378.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str. 1_6] Length = 218 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 164 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 211 >gi|160939770|ref|ZP_02087117.1| hypothetical protein CLOBOL_04661 [Clostridium bolteae ATCC BAA-613] gi|158437204|gb|EDP14969.1| hypothetical protein CLOBOL_04661 [Clostridium bolteae ATCC BAA-613] Length = 541 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDL----DRQWFMLLQS 77 V Y Y P+ SCL + L E + Q L +GF ++ ++ F + Sbjct: 349 VFYSAYVPVNDDSCLPSVTARPPLLREHRLYQADWLLRFYGFKAEELLSEEQPNFNVFLD 408 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L I + + ++PG+ +K RI+ Sbjct: 409 -----PKCDWALRHLELFPVE-----INRASYGELLRVPGMGVKSVQRIV 448 >gi|328953957|ref|YP_004371291.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328454281|gb|AEB10110.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 442 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 13/106 (12%) Query: 26 YIIYCPI-RTLSCLGKIGDFCTL---FVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 I P + +GK G L + + S ++ ++ L + GV Sbjct: 305 MEIIVPDDQLFLAIGKRGQNVRLAAKLTGWKIDVKSESKY---SKSMKEGYLSLLKIPGV 361 Query: 82 GARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIM 125 G A + +A E+ E+ N + Q+PGI+ K A++I+ Sbjct: 362 GEMTASALYEAGFTSAKEVAEA----NLAELMQVPGINEKKATQIL 403 >gi|254496162|ref|ZP_05109059.1| recombinational DNA repair protein RecR [Legionella drancourtii LLAP12] gi|254354618|gb|EET13256.1| recombinational DNA repair protein RecR [Legionella drancourtii LLAP12] Length = 197 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQDMSCVN 147 + + +PG+ K A R++ L + + + L+S ++Q MS +N Sbjct: 8 VEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLASCLEQAMSQIN 52 >gi|171778643|ref|ZP_02919739.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282600|gb|EDT48024.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 226 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 29/122 (23%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ------IRLFG 62 + D ++ V + + P T S + ++ D Sbjct: 121 LAEKLADEAVVYVAKIGEEV-TPASTPSQ-------AKATTASGVQGDDSAQINLNT--- 169 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 + + LQ++ G+GA+ A ++ A S+ + I GI K Sbjct: 170 -ATTEE------LQTISGIGAKRAQDIIDYRDANGGFSSVDD-----LKNISGIGEKTLE 217 Query: 123 RI 124 ++ Sbjct: 218 KL 219 >gi|114776451|ref|ZP_01451496.1| excinuclease ABC subunit C [Mariprofundus ferrooxydans PV-1] gi|114553281|gb|EAU55679.1| excinuclease ABC subunit C [Mariprofundus ferrooxydans PV-1] Length = 611 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 L +V+G+G + +L +E + K +AQ PGIS K+A +I L Sbjct: 559 LDTVEGIGPAKRISLLKHFGG---IEGVKKAGRKQLAQAPGISDKLAEKIFLSL 609 >gi|167036562|ref|YP_001664140.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114990|ref|YP_004185149.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855396|gb|ABY93804.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928081|gb|ADV78766.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 406 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268 >gi|289577926|ref|YP_003476553.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter italicus Ab9] gi|289527639|gb|ADD01991.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter italicus Ab9] Length = 406 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 245 EKDLALLDTIPGVGRRTAEQIIAE 268 >gi|317132690|ref|YP_004092004.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3] gi|315470669|gb|ADU27273.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3] Length = 447 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 36/190 (18%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL--FGFLSDLDRQWFMLLQSV--- 78 V Y Y P+ + L L E + Q L +GF S + LL Sbjct: 252 VFYSAYMPMNEDTLLPARDVKPPLLREHRLYQADWLLRFYGF-SADE-----LLDDAHPD 305 Query: 79 --QGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM-------TE 127 + + A+ L + + + + ++PGI + A RI+ + Sbjct: 306 FNPYLDPKCNWALHHLEQFPVE-----VNRADYATLLRVPGIGVTSAKRILRVRRAGSLD 360 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L V+++ + + AI AL++ A+ + + Sbjct: 361 F-DALKKLGVVLKRAQYFITCRDRQRQGLMQTKDAAIRALLS--------EQALARLQED 411 Query: 188 EKNIADDSQI 197 ++ Q+ Sbjct: 412 APSVLRPRQL 421 >gi|56478596|ref|YP_160185.1| excinuclease ABC subunit C [Aromatoleum aromaticum EbN1] gi|81356713|sp|Q5P080|UVRC_AZOSE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56314639|emb|CAI09284.1| Excinuclease ABC subunit C [Aromatoleum aromaticum EbN1] Length = 602 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ + G+G +L+ + V + +++ + ++ G+S K A I Sbjct: 551 LEDIPGIGPMRRRNLLASFGGLDGVRAATVED---LCRVGGVSRKTAEAI 597 >gi|326391563|ref|ZP_08213094.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus JW 200] gi|325992393|gb|EGD50854.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacter ethanolicus JW 200] Length = 325 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 189 EKDLALLDTIPGVGRRTAEQIIAE 212 >gi|170722748|ref|YP_001750436.1| recombination protein RecR [Pseudomonas putida W619] gi|229470339|sp|B1JBZ1|RECR_PSEPW RecName: Full=Recombination protein recR gi|169760751|gb|ACA74067.1| recombination protein RecR [Pseudomonas putida W619] Length = 200 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152 + +PG+ K A R+ +L + S + Q +S + H Sbjct: 11 IDALRTLPGVGQKTAQRMALQLLERDRSGGVRLAQALSLAMEGVGH 56 >gi|49482705|ref|YP_039929.1| recombination protein RecR [Staphylococcus aureus subsp. aureus MRSA252] gi|282903063|ref|ZP_06310956.1| recombination protein RecR [Staphylococcus aureus subsp. aureus C160] gi|282907452|ref|ZP_06315300.1| recombination protein recR [Staphylococcus aureus subsp. aureus Btn1260] gi|282907800|ref|ZP_06315640.1| recombination protein RecR [Staphylococcus aureus subsp. aureus WW2703/97] gi|283959908|ref|ZP_06377349.1| recombination protein RecR [Staphylococcus aureus subsp. aureus A017934/97] gi|295427011|ref|ZP_06819650.1| recombination protein RecR [Staphylococcus aureus subsp. aureus EMRSA16] gi|297588777|ref|ZP_06947418.1| recombination protein R [Staphylococcus aureus subsp. aureus MN8] gi|56749587|sp|Q6GJJ3|RECR_STAAR RecName: Full=Recombination protein recR gi|49240834|emb|CAG39501.1| putative recombination protein [Staphylococcus aureus subsp. aureus MRSA252] gi|282328364|gb|EFB58637.1| recombination protein RecR [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330351|gb|EFB59872.1| recombination protein recR [Staphylococcus aureus subsp. aureus Btn1260] gi|282597522|gb|EFC02481.1| recombination protein RecR [Staphylococcus aureus subsp. aureus C160] gi|283789500|gb|EFC28327.1| recombination protein RecR [Staphylococcus aureus subsp. aureus A017934/97] gi|295129463|gb|EFG59090.1| recombination protein RecR [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577288|gb|EFH96001.1| recombination protein R [Staphylococcus aureus subsp. aureus MN8] gi|315193218|gb|EFU23617.1| recombination protein RecR [Staphylococcus aureus subsp. aureus CGS00] Length = 198 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRIM---TELK 129 ++PGI K A R+ ++K Sbjct: 11 INSFMKLPGIGPKTAQRLAFHTLDMK 36 >gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J] gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J] Length = 652 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 23/125 (18%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGIS----- 117 + D+ F L ++ VGA+ + +L + L+++ + + IAQI G+ Sbjct: 491 SNSADKLLFGL--GIRHVGAKASRLLLETFGSVENLMKA----DDQSIAQIDGLGHVIAN 544 Query: 118 -------MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI----NAISA 166 + A +++ ELK K ++L + ++ + + A Sbjct: 545 SIKNYFAKEEAKQLIFELKDKGVNLDYLGKKVDTSAQLFGLTVVLTGKLEEMTRQEAKEK 604 Query: 167 LVNLG 171 L N+G Sbjct: 605 LENMG 609 >gi|327329178|gb|EGE70938.1| recombination protein RecR [Propionibacterium acnes HL103PA1] Length = 201 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 7/18 (38%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 ++++PGI K A RI Sbjct: 10 IDALSRLPGIGPKGAQRI 27 >gi|314965632|gb|EFT09731.1| recombination protein RecR [Propionibacterium acnes HL082PA2] Length = 201 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 7/18 (38%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 ++++PGI K A RI Sbjct: 10 IDALSRLPGIGPKGAQRI 27 >gi|313764792|gb|EFS36156.1| recombination protein RecR [Propionibacterium acnes HL013PA1] gi|313815377|gb|EFS53091.1| recombination protein RecR [Propionibacterium acnes HL059PA1] gi|314916441|gb|EFS80272.1| recombination protein RecR [Propionibacterium acnes HL005PA4] gi|314917282|gb|EFS81113.1| recombination protein RecR [Propionibacterium acnes HL050PA1] gi|314921657|gb|EFS85488.1| recombination protein RecR [Propionibacterium acnes HL050PA3] gi|314930697|gb|EFS94528.1| recombination protein RecR [Propionibacterium acnes HL067PA1] gi|314955186|gb|EFS99591.1| recombination protein RecR [Propionibacterium acnes HL027PA1] gi|314959379|gb|EFT03481.1| recombination protein RecR [Propionibacterium acnes HL002PA1] gi|315099546|gb|EFT71522.1| recombination protein RecR [Propionibacterium acnes HL059PA2] gi|315102224|gb|EFT74200.1| recombination protein RecR [Propionibacterium acnes HL046PA1] gi|327454473|gb|EGF01128.1| recombination protein RecR [Propionibacterium acnes HL087PA3] gi|327456542|gb|EGF03197.1| recombination protein RecR [Propionibacterium acnes HL083PA2] gi|328756236|gb|EGF69852.1| recombination protein RecR [Propionibacterium acnes HL087PA1] gi|328759441|gb|EGF73057.1| recombination protein RecR [Propionibacterium acnes HL025PA2] Length = 201 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 7/18 (38%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 ++++PGI K A RI Sbjct: 10 IDALSRLPGIGPKGAQRI 27 >gi|50841698|ref|YP_054925.1| putative recombination protein RecR [Propionibacterium acnes KPA171202] gi|282853261|ref|ZP_06262598.1| recombination protein RecR [Propionibacterium acnes J139] gi|289424537|ref|ZP_06426320.1| recombination protein RecR [Propionibacterium acnes SK187] gi|289428817|ref|ZP_06430497.1| recombination protein RecR [Propionibacterium acnes J165] gi|295129773|ref|YP_003580436.1| recombination protein RecR [Propionibacterium acnes SK137] gi|73621506|sp|Q6AB99|RECR_PROAC RecName: Full=Recombination protein recR gi|50839300|gb|AAT81967.1| putative recombination protein RecR [Propionibacterium acnes KPA171202] gi|282582714|gb|EFB88094.1| recombination protein RecR [Propionibacterium acnes J139] gi|289155234|gb|EFD03916.1| recombination protein RecR [Propionibacterium acnes SK187] gi|289157818|gb|EFD06041.1| recombination protein RecR [Propionibacterium acnes J165] gi|291375135|gb|ADD98989.1| recombination protein RecR [Propionibacterium acnes SK137] gi|313772742|gb|EFS38708.1| recombination protein RecR [Propionibacterium acnes HL074PA1] gi|313793233|gb|EFS41300.1| recombination protein RecR [Propionibacterium acnes HL110PA1] gi|313802803|gb|EFS44019.1| recombination protein RecR [Propionibacterium acnes HL110PA2] gi|313806719|gb|EFS45224.1| recombination protein RecR [Propionibacterium acnes HL087PA2] gi|313811223|gb|EFS48937.1| recombination protein RecR [Propionibacterium acnes HL083PA1] gi|313813995|gb|EFS51709.1| recombination protein RecR [Propionibacterium acnes HL025PA1] gi|313817486|gb|EFS55200.1| recombination protein RecR [Propionibacterium acnes HL046PA2] gi|313821298|gb|EFS59012.1| recombination protein RecR [Propionibacterium acnes HL036PA1] gi|313824760|gb|EFS62474.1| recombination protein RecR [Propionibacterium acnes HL036PA2] gi|313826422|gb|EFS64136.1| recombination protein RecR [Propionibacterium acnes HL063PA1] gi|313828819|gb|EFS66533.1| recombination protein RecR [Propionibacterium acnes HL063PA2] gi|313832226|gb|EFS69940.1| recombination protein RecR [Propionibacterium acnes HL007PA1] gi|313834282|gb|EFS71996.1| recombination protein RecR [Propionibacterium acnes HL056PA1] gi|313840339|gb|EFS78053.1| recombination protein RecR [Propionibacterium acnes HL086PA1] gi|314922446|gb|EFS86277.1| recombination protein RecR [Propionibacterium acnes HL001PA1] gi|314926532|gb|EFS90363.1| recombination protein RecR [Propionibacterium acnes HL036PA3] gi|314961564|gb|EFT05665.1| recombination protein RecR [Propionibacterium acnes HL002PA2] gi|314964644|gb|EFT08744.1| recombination protein RecR [Propionibacterium acnes HL082PA1] gi|314969352|gb|EFT13450.1| recombination protein RecR [Propionibacterium acnes HL037PA1] gi|314974377|gb|EFT18472.1| recombination protein RecR [Propionibacterium acnes HL053PA1] gi|314976989|gb|EFT21084.1| recombination protein RecR [Propionibacterium acnes HL045PA1] gi|314980019|gb|EFT24113.1| recombination protein RecR [Propionibacterium acnes HL072PA2] gi|314982795|gb|EFT26887.1| recombination protein RecR [Propionibacterium acnes HL110PA3] gi|314985373|gb|EFT29465.1| recombination protein RecR [Propionibacterium acnes HL005PA1] gi|314987436|gb|EFT31527.1| recombination protein RecR [Propionibacterium acnes HL005PA2] gi|314989200|gb|EFT33291.1| recombination protein RecR [Propionibacterium acnes HL005PA3] gi|315078846|gb|EFT50868.1| recombination protein RecR [Propionibacterium acnes HL053PA2] gi|315081811|gb|EFT53787.1| recombination protein RecR [Propionibacterium acnes HL078PA1] gi|315082835|gb|EFT54811.1| recombination protein RecR [Propionibacterium acnes HL027PA2] gi|315086410|gb|EFT58386.1| recombination protein RecR [Propionibacterium acnes HL002PA3] gi|315087897|gb|EFT59873.1| recombination protein RecR [Propionibacterium acnes HL072PA1] gi|315091448|gb|EFT63424.1| recombination protein RecR [Propionibacterium acnes HL110PA4] gi|315094386|gb|EFT66362.1| recombination protein RecR [Propionibacterium acnes HL060PA1] gi|315097212|gb|EFT69188.1| recombination protein RecR [Propionibacterium acnes HL038PA1] gi|315105108|gb|EFT77084.1| recombination protein RecR [Propionibacterium acnes HL050PA2] gi|315107697|gb|EFT79673.1| recombination protein RecR [Propionibacterium acnes HL030PA1] gi|315109894|gb|EFT81870.1| recombination protein RecR [Propionibacterium acnes HL030PA2] gi|327331272|gb|EGE73011.1| recombination protein RecR [Propionibacterium acnes HL096PA2] gi|327333905|gb|EGE75622.1| recombination protein RecR [Propionibacterium acnes HL096PA3] gi|327444626|gb|EGE91280.1| recombination protein RecR [Propionibacterium acnes HL013PA2] gi|327447350|gb|EGE94004.1| recombination protein RecR [Propionibacterium acnes HL043PA1] gi|327450462|gb|EGE97116.1| recombination protein RecR [Propionibacterium acnes HL043PA2] gi|327457182|gb|EGF03837.1| recombination protein RecR [Propionibacterium acnes HL092PA1] gi|328758130|gb|EGF71746.1| recombination protein RecR [Propionibacterium acnes HL020PA1] gi|328761181|gb|EGF74723.1| recombination protein RecR [Propionibacterium acnes HL099PA1] gi|332674612|gb|AEE71428.1| recombination protein RecR [Propionibacterium acnes 266] Length = 201 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 7/18 (38%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 ++++PGI K A RI Sbjct: 10 IDALSRLPGIGPKGAQRI 27 >gi|289626299|ref|ZP_06459253.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 261 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 207 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 254 >gi|189459398|ref|ZP_03008183.1| hypothetical protein BACCOP_00019 [Bacteroides coprocola DSM 17136] gi|189433855|gb|EDV02840.1| hypothetical protein BACCOP_00019 [Bacteroides coprocola DSM 17136] Length = 222 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 A++PGI K A R++ L Sbjct: 34 FAKLPGIGRKTAMRLVLHL 52 >gi|110642025|ref|YP_669755.1| UvrC excinuclease ABC subunit C [Escherichia coli 536] gi|110343617|gb|ABG69854.1| UvrC excinuclease ABC subunit C [Escherichia coli 536] Length = 441 Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 389 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 440 >gi|329964827|ref|ZP_08301835.1| recombination protein RecR [Bacteroides fluxus YIT 12057] gi|328524468|gb|EGF51536.1| recombination protein RecR [Bacteroides fluxus YIT 12057] Length = 205 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PGI K A R++ L Sbjct: 14 VSEFAKLPGIGRKTAMRLVLHL 35 >gi|319744775|gb|EFV97115.1| competence protein CelA [Streptococcus agalactiae ATCC 13813] Length = 217 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ GVGA+ A +L + ++I + + GI K ++ Sbjct: 166 LQTISGVGAKRAQDILDYRDSQGGFKTIDD-----LKNVSGIGEKTLEKL 210 >gi|254478345|ref|ZP_05091724.1| recombination protein RecR [Carboxydibrachium pacificum DSM 12653] gi|214035703|gb|EEB76398.1| recombination protein RecR [Carboxydibrachium pacificum DSM 12653] Length = 199 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++++PGI K A R+ Sbjct: 12 IEELSKLPGIGPKTAQRL 29 >gi|34581621|ref|ZP_00143101.1| 30S ribosomal protein S1 [Rickettsia sibirica 246] gi|28263006|gb|EAA26510.1| 30S ribosomal protein S1 [Rickettsia sibirica 246] Length = 568 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D +++DV G P L ++GD +F+E ++ Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93 >gi|22536945|ref|NP_687796.1| competence protein CelA [Streptococcus agalactiae 2603V/R] gi|25010856|ref|NP_735251.1| hypothetical protein gbs0801 [Streptococcus agalactiae NEM316] gi|77411344|ref|ZP_00787692.1| competence protein CelA [Streptococcus agalactiae CJB111] gi|77413586|ref|ZP_00789773.1| competence protein CelA [Streptococcus agalactiae 515] gi|22533798|gb|AAM99668.1|AE014227_12 competence protein CelA [Streptococcus agalactiae 2603V/R] gi|23095235|emb|CAD46445.1| Unknown [Streptococcus agalactiae NEM316] gi|77160352|gb|EAO71476.1| competence protein CelA [Streptococcus agalactiae 515] gi|77162604|gb|EAO73567.1| competence protein CelA [Streptococcus agalactiae CJB111] Length = 217 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ GVGA+ A +L + ++I + + GI K ++ Sbjct: 166 LQTISGVGAKRAQDILDYRDSQGGFKTIDD-----LKNVSGIGEKTLEKL 210 >gi|330960851|gb|EGH61111.1| radical SAM family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 406 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L + + +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNNA----DPALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|330950408|gb|EGH50668.1| excinuclease ABC subunit C [Pseudomonas syringae Cit 7] Length = 336 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 282 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 329 >gi|330995009|ref|ZP_08318929.1| hypothetical protein SXCC_04894 [Gluconacetobacter sp. SXCC-1] gi|329757922|gb|EGG74446.1| hypothetical protein SXCC_04894 [Gluconacetobacter sp. SXCC-1] Length = 677 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++G+G A ++ E V +I Q + + ++ GI K A RI+ Sbjct: 49 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPERLREVTGIGPKRAERIV 94 >gi|312880191|ref|ZP_07739991.1| flagellin domain protein [Aminomonas paucivorans DSM 12260] gi|310783482|gb|EFQ23880.1| flagellin domain protein [Aminomonas paucivorans DSM 12260] Length = 1932 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 14/68 (20%) Query: 27 IIYCPIRTLSCLGKIGDFC--TLFVETHMR-------QDQIRLFGFL-----SDLDRQWF 72 I+ P+ +LS +GK+G+ +++ M+ +D I +G+ R+ F Sbjct: 1613 EIHVPLGSLSEMGKLGEQISEQIWLHLLMQHDGVLRGEDDILPYGYNPDLMEEKDKREIF 1672 Query: 73 MLLQSVQG 80 + +V G Sbjct: 1673 QFVNNVPG 1680 >gi|326792661|ref|YP_004310482.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427] gi|326543425|gb|ADZ85284.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427] Length = 749 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++G+GA+ A ++ II + V+AQ+ GIS K A I Sbjct: 87 IKGIGAKTAKKIVKHFGLDTFR--IIEEEPLVLAQVSGISEKKAQEI 131 >gi|238650580|ref|YP_002916432.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic] gi|238624678|gb|ACR47384.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic] Length = 568 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D +++DV G P L ++GD +F+E ++ Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93 >gi|238895471|ref|YP_002920206.1| excinuclease ABC subunit C [Klebsiella pneumoniae NTUH-K2044] gi|330001010|ref|ZP_08303870.1| excinuclease ABC, C subunit [Klebsiella sp. MS 92-3] gi|238547788|dbj|BAH64139.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537814|gb|EGF64009.1| excinuclease ABC, C subunit [Klebsiella sp. MS 92-3] Length = 610 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L ++ + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLQQASVEE----IAKVPGISHALAEKIFYSLK 609 >gi|229586799|ref|YP_002845300.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5] gi|228021849|gb|ACP53557.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5] Length = 568 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D +++DV G P L ++GD +F+E ++ Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93 >gi|15892670|ref|NP_360384.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7] gi|81528161|sp|Q92HM4|RS1_RICCN RecName: Full=30S ribosomal protein S1 gi|15619842|gb|AAL03285.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7] Length = 568 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 +KG + + D +++DV G P L ++GD +F+E ++ Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNG 93 >gi|25026767|ref|NP_736821.1| recombination protein RecR [Corynebacterium efficiens YS-314] gi|259508096|ref|ZP_05750996.1| RecR protein [Corynebacterium efficiens YS-314] gi|73621481|sp|Q8FU10|RECR_COREF RecName: Full=Recombination protein recR gi|23492046|dbj|BAC17021.1| putative recombination protein [Corynebacterium efficiens YS-314] gi|259164319|gb|EEW48873.1| RecR protein [Corynebacterium efficiens YS-314] Length = 218 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 ++++PG+ K A RI L Sbjct: 13 LSRLPGVGPKSAQRIAFHL 31 >gi|89899639|ref|YP_522110.1| PHP-like protein [Rhodoferax ferrireducens T118] gi|89344376|gb|ABD68579.1| PHP-like [Rhodoferax ferrireducens T118] Length = 580 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 8/97 (8%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L + G+G + + L T +L ++ + + G K R + E G Sbjct: 95 ELLKIPGLGPKRVRTLHRELGIETLAQLRQAAEQG---RVQSVHGFGAKS-ERQILEATG 150 Query: 131 KAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISA 166 + + + DM V + A++A Sbjct: 151 RLLQQERRYKWADMEPVAQALLADLHATPGVHRAVAA 187 >gi|313146708|ref|ZP_07808901.1| recombination protein recR [Bacteroides fragilis 3_1_12] gi|313135475|gb|EFR52835.1| recombination protein recR [Bacteroides fragilis 3_1_12] Length = 207 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 19 FSKLPGIGRKTAMRLVLHL 37 >gi|270294151|ref|ZP_06200353.1| recombination protein RecR [Bacteroides sp. D20] gi|270275618|gb|EFA21478.1| recombination protein RecR [Bacteroides sp. D20] Length = 205 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PG+ K A R++ L Sbjct: 14 VNEFAKLPGVGRKTAMRLVLHL 35 >gi|229495545|ref|ZP_04389278.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229317528|gb|EEN83428.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 235 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 81 VGARVA-MGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIM 125 +G + S + + +S + Q+PGI A RI+ Sbjct: 87 IGPPTSDRSYTSSRKLPEGITLPLNQADSATLTQVPGIGATFAQRIV 133 >gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Bifidobacterium longum DJO10A] gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A] gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A] Length = 920 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 70 QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126 + +L S++ +G A + S + + + +I + + I G+ +IA ++ Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807 Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177 + +G +L + + E + + + ++ +L GY +D A Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863 Query: 178 TTAVVS 183 A++ Sbjct: 864 KEAIIE 869 >gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA] gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA] Length = 920 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 70 QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126 + +L S++ +G A + S + + + +I + + I G+ +IA ++ Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807 Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177 + +G +L + + E + + + ++ +L GY +D A Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863 Query: 178 TTAVVS 183 A++ Sbjct: 864 KEAIIE 869 >gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F] gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8] gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F] Length = 920 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 70 QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126 + +L S++ +G A + S + + + +I + + I G+ +IA ++ Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807 Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177 + +G +L + + E + + + ++ +L GY +D A Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863 Query: 178 TTAVVS 183 A++ Sbjct: 864 KEAIIE 869 >gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68] gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68] Length = 920 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 70 QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126 + +L S++ +G A + S + + + +I + + I G+ +IA ++ Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807 Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177 + +G +L + + E + + + ++ +L GY +D A Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863 Query: 178 TTAVVS 183 A++ Sbjct: 864 KEAIIE 869 >gi|203284372|ref|YP_002222112.1| recombination protein RecR [Borrelia duttonii Ly] gi|201083815|gb|ACH93406.1| recombination protein RecR [Borrelia duttonii Ly] Length = 194 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 18/27 (66%) Query: 101 SIILQNSKVIAQIPGISMKIASRIMTE 127 II ++++++PGI K A+R++ + Sbjct: 1 MIIQDLIELVSKLPGIGKKTAARMVYD 27 >gi|15613826|ref|NP_242129.1| hypothetical protein BH1263 [Bacillus halodurans C-125] gi|10173879|dbj|BAB04982.1| BH1263 [Bacillus halodurans C-125] Length = 391 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 33/80 (41%), Gaps = 25/80 (31%) Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD 142 + + G++ +++ + PGI K A +I+ ++ +Q Sbjct: 95 PKTSQGIIRYLSSD---------------RFPGIGKKTAQQIV----------DTLGEQA 129 Query: 143 MSCVNKEQAHICSMPSFAIN 162 +S + ++++ + ++P + Sbjct: 130 LSRIVEDESALDAVPKLSKE 149 >gi|302561257|ref|ZP_07313599.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000] gi|302478875|gb|EFL41968.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000] Length = 139 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 18/94 (19%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L ++ D F T+ R R F L V G+G ++ Sbjct: 10 LYLLQRVRDEAHRFAITYQR---------AKRAKR--FRSGPLDDVPGLGETRKQALIKH 58 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRIM 125 + +L + I Q I +PGI K A I+ Sbjct: 59 FGSVKKLRSATIDQ----ICDVPGIGRKTAETIV 88 >gi|149278408|ref|ZP_01884545.1| recombination protein [Pedobacter sp. BAL39] gi|149230778|gb|EDM36160.1| recombination protein [Pedobacter sp. BAL39] Length = 205 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 14/25 (56%) Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131 +++PG+ K A R++ L GK Sbjct: 12 VNEFSRLPGVGQKTALRLVLHLLGK 36 >gi|160872916|ref|ZP_02063048.1| recombination protein RecR [Rickettsiella grylli] gi|159121715|gb|EDP47053.1| recombination protein RecR [Rickettsiella grylli] Length = 198 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 +PG+ K A R++ L KA + + + ++ +E + + + I AL + Sbjct: 17 LPGVGPKSAQRMVFHLLEKARGDALTLAKMITQTVQEIGNCEHCRNLSETPICALCS 73 >gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705] gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705] Length = 920 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 70 QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126 + +L S++ +G A + S + + + +I + + I G+ +IA ++ Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807 Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177 + +G +L + + E + + + ++ +L GY +D A Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863 Query: 178 TTAVVS 183 A++ Sbjct: 864 KEAIIE 869 >gi|89898331|ref|YP_515441.1| recombination protein RecR [Chlamydophila felis Fe/C-56] gi|123483333|sp|Q254J2|RECR_CHLFF RecName: Full=Recombination protein recR gi|89331703|dbj|BAE81296.1| recombination and repair [Chlamydophila felis Fe/C-56] Length = 200 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Query: 107 SKVIAQIPGISMKIASRIMTEL----KGKAISLSSVVQQ 141 + ++PGI K A ++ EL + + +L + Sbjct: 12 ISFLRKLPGIGFKTAEKLAFELLDWEQDQLEALGKAFSE 50 >gi|257869742|ref|ZP_05649395.1| helicase RecD/TraA [Enterococcus gallinarum EG2] gi|257803906|gb|EEV32728.1| helicase RecD/TraA [Enterococcus gallinarum EG2] Length = 858 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 6/14 (42%), Positives = 9/14 (64%) Query: 112 QIPGISMKIASRIM 125 + PGI K A +I+ Sbjct: 98 KFPGIGKKTAEKIV 111 >gi|154499874|ref|ZP_02037912.1| hypothetical protein BACCAP_03531 [Bacteroides capillosus ATCC 29799] gi|150271472|gb|EDM98729.1| hypothetical protein BACCAP_03531 [Bacteroides capillosus ATCC 29799] Length = 738 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 68 DRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 +R F L S V+G+GA A ++ L +++ ++ + + +I GI+ K A Sbjct: 82 ERAIFDYLASGAVRGIGAATARKIVEEFGGEAL--TVLEEHPEQLTKIHGITRKRA 135 >gi|145298808|ref|YP_001141649.1| recombination protein RecR [Aeromonas salmonicida subsp. salmonicida A449] gi|166221920|sp|A4SLX9|RECR_AERS4 RecName: Full=Recombination protein recR gi|142851580|gb|ABO89901.1| recombination protein RecR [Aeromonas salmonicida subsp. salmonicida A449] Length = 200 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 K + +PG+ K A R+ L + S + Q ++ E H +F NA+ Sbjct: 12 KALQVLPGVGPKSAQRMAFTLLERERSGGLRLAQLLNRALTEIGHCSHCRTFTENAL 68 >gi|304314106|ref|YP_003849253.1| DNA mismatch recognition protein MutS [Methanothermobacter marburgensis str. Marburg] gi|302587565|gb|ADL57940.1| predicted DNA mismatch recognition protein MutS [Methanothermobacter marburgensis str. Marburg] Length = 642 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 73 MLLQSVQGVGARVAMGVLSRITAT-ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 L V G+G R+A ++ + EL++++ IA I GIS + A I +EL Sbjct: 10 EALTDVSGIGERLAQKIIDELGGEKELLKAVENLEIDRIASIEGISQRKAIEITSEL 66 >gi|302768505|ref|XP_002967672.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii] gi|300164410|gb|EFJ31019.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii] Length = 717 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM EL+ K +S +V D + + +++ + ++ LGY Sbjct: 127 AQQIMVELRQK-RKVSELVDCDAMGLLVMASARVGTAHYSLGVLRTMLELGYHPP--VKV 183 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 +V+ K DD+Q+ AL+ Sbjct: 184 WSAVVSKLGKNVDDAQL---ALK 203 >gi|297565936|ref|YP_003684908.1| excinuclease ABC subunit C [Meiothermus silvanus DSM 9946] gi|296850385|gb|ADH63400.1| excinuclease ABC, C subunit [Meiothermus silvanus DSM 9946] Length = 594 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 ++ G+G + +L++ + E ++++ +++ +A++PG+ + A Sbjct: 542 NIPGIGPKRKEALLAQFSTLEELKAM---DAERLAKLPGMDKRSAE 584 >gi|218130919|ref|ZP_03459723.1| hypothetical protein BACEGG_02520 [Bacteroides eggerthii DSM 20697] gi|217987263|gb|EEC53594.1| hypothetical protein BACEGG_02520 [Bacteroides eggerthii DSM 20697] Length = 205 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PG+ K A R++ L Sbjct: 14 VNEFAKLPGVGRKTAMRLVLHL 35 >gi|206901227|ref|YP_002251790.1| recombination protein RecR [Dictyoglomus thermophilum H-6-12] gi|206740330|gb|ACI19388.1| recombination protein RecR [Dictyoglomus thermophilum H-6-12] Length = 200 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 8/15 (53%), Positives = 10/15 (66%) Query: 110 IAQIPGISMKIASRI 124 + +IPGI K A RI Sbjct: 14 LTKIPGIGPKSAQRI 28 >gi|147676388|ref|YP_001210603.1| recombinational DNA repair protein [Pelotomaculum thermopropionicum SI] gi|229470332|sp|A5D6B3|RECR_PELTS RecName: Full=Recombination protein recR gi|146272485|dbj|BAF58234.1| recombinational DNA repair protein [Pelotomaculum thermopropionicum SI] Length = 200 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 7/18 (38%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + +A++PGI K A R+ Sbjct: 12 IEQLARLPGIGPKTAQRL 29 >gi|119485345|ref|ZP_01619673.1| recombination protein RecR [Lyngbya sp. PCC 8106] gi|119457101|gb|EAW38227.1| recombination protein RecR [Lyngbya sp. PCC 8106] Length = 189 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 5/18 (27%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 + + ++PG+ K A R+ Sbjct: 2 IEQLQRLPGVGPKTAQRL 19 >gi|53713342|ref|YP_099334.1| recombination protein RecR [Bacteroides fragilis YCH46] gi|60681587|ref|YP_211731.1| recombination protein RecR [Bacteroides fragilis NCTC 9343] gi|253565320|ref|ZP_04842775.1| recombination protein recR [Bacteroides sp. 3_2_5] gi|255008967|ref|ZP_05281093.1| recombination protein RecR [Bacteroides fragilis 3_1_12] gi|265763415|ref|ZP_06091983.1| recombination protein RecR [Bacteroides sp. 2_1_16] gi|73621459|sp|Q5LDK8|RECR_BACFN RecName: Full=Recombination protein recR gi|73621460|sp|Q64UM9|RECR_BACFR RecName: Full=Recombination protein recR gi|52216207|dbj|BAD48800.1| recombination protein RecR [Bacteroides fragilis YCH46] gi|60493021|emb|CAH07801.1| putative RecR-family recombination protein [Bacteroides fragilis NCTC 9343] gi|251945599|gb|EES86006.1| recombination protein recR [Bacteroides sp. 3_2_5] gi|263256023|gb|EEZ27369.1| recombination protein RecR [Bacteroides sp. 2_1_16] gi|301163145|emb|CBW22694.1| putative RecR-family recombination protein [Bacteroides fragilis 638R] Length = 205 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 17 FSKLPGIGRKTAMRLVLHL 35 >gi|325570817|ref|ZP_08146500.1| exodeoxyribonuclease V alpha subunit [Enterococcus casseliflavus ATCC 12755] gi|325156327|gb|EGC68509.1| exodeoxyribonuclease V alpha subunit [Enterococcus casseliflavus ATCC 12755] Length = 886 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%) Query: 107 SKVIA--QIPGISMKIASRIM 125 ++ + PGI K A +I+ Sbjct: 91 IAYLSGEKFPGIGKKTAEKIV 111 >gi|172058084|ref|YP_001814544.1| RecD/TraA family helicase [Exiguobacterium sibiricum 255-15] gi|171990605|gb|ACB61527.1| helicase, RecD/TraA family [Exiguobacterium sibiricum 255-15] Length = 741 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 S G+G + A ++ + + IIL++SK + ++PG+ K A Sbjct: 97 SFTGIGPKTAKNIVDALGEDAID--IILKDSKALDRVPGLKQKQA 139 >gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 920 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 70 QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126 + +L S++ +G A + S + + + +I + + I G+ +IA ++ Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807 Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177 + +G +L + + E + + + ++ +L GY +D A Sbjct: 808 FAATREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863 Query: 178 TTAVVS 183 A++ Sbjct: 864 KEAIIE 869 >gi|209522777|ref|ZP_03271335.1| recombination protein RecR [Arthrospira maxima CS-328] gi|209496826|gb|EDZ97123.1| recombination protein RecR [Arthrospira maxima CS-328] Length = 208 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 6/20 (30%), Positives = 10/20 (50%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + ++PGI K A R+ Sbjct: 21 IEQFQRLPGIGPKTAQRLAL 40 >gi|160887705|ref|ZP_02068708.1| hypothetical protein BACUNI_00106 [Bacteroides uniformis ATCC 8492] gi|317478909|ref|ZP_07938056.1| recombination protein RecR [Bacteroides sp. 4_1_36] gi|156862836|gb|EDO56267.1| hypothetical protein BACUNI_00106 [Bacteroides uniformis ATCC 8492] gi|316904886|gb|EFV26693.1| recombination protein RecR [Bacteroides sp. 4_1_36] Length = 205 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PG+ K A R++ L Sbjct: 14 VNEFAKLPGVGRKTAMRLVLHL 35 >gi|262043445|ref|ZP_06016568.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039187|gb|EEW40335.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 610 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L ++ + + IA++PGIS +A +I LK Sbjct: 558 LETIEGVGPKRRQMLLKYMGGLQGLQQASVEE----IAKVPGISHALAEKIFYSLK 609 >gi|227529029|ref|ZP_03959078.1| exodeoxyribonuclease V alpha subunit [Lactobacillus vaginalis ATCC 49540] gi|227351041|gb|EEJ41332.1| exodeoxyribonuclease V alpha subunit [Lactobacillus vaginalis ATCC 49540] Length = 827 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%) Query: 111 AQIPGISMKIASRIMTELK----GKAISLSSVVQ--QDMSCVNKEQAHICSMPSFAINAI 164 Q PG+ K A +I+ +L K + ++ + + + I Sbjct: 109 KQFPGVGKKTAEKIVDQLGIHAIDKITADPHILDGLKLREAIRTSLVENLNANQGMDQII 168 Query: 165 SALVNLGY 172 L +LG+ Sbjct: 169 IGLNDLGF 176 >gi|170078503|ref|YP_001735141.1| hypothetical protein SYNPCC7002_A1898 [Synechococcus sp. PCC 7002] gi|169886172|gb|ACA99885.1| conserved hypothetical protein [Synechococcus sp. PCC 7002] Length = 520 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 13/60 (21%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 + L+++ G+G +A G++ + L + + ++ GI K A +L GK Sbjct: 472 IELETLPGIGPSLAQGIIEGRPYSGLTD---------LQRVSGIGEKKA----ADLAGKV 518 >gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT] gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT] Length = 749 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 8/62 (12%) Query: 65 SDLDRQWFMLLQSV-QGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 + ++Q L S GVG VA +L + ++ + + + + + K A+ Sbjct: 684 TLKEQQ--EYLISALPGVGPSVARNLLRHFGSVERIMTASEGE----LMSVDKVGPKTAA 737 Query: 123 RI 124 RI Sbjct: 738 RI 739 >gi|167038578|ref|YP_001666156.1| recombination protein RecR [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116973|ref|YP_004187132.1| recombination protein RecR [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390314|ref|ZP_08211873.1| recombination protein RecR [Thermoanaerobacter ethanolicus JW 200] gi|229470344|sp|B0K800|RECR_THEP3 RecName: Full=Recombination protein recR gi|166857412|gb|ABY95820.1| recombination protein RecR [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930064|gb|ADV80749.1| recombination protein RecR [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993591|gb|EGD52024.1| recombination protein RecR [Thermoanaerobacter ethanolicus JW 200] Length = 199 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++++PGI K A R+ Sbjct: 12 IEELSKLPGIGPKTAQRL 29 >gi|271965900|ref|YP_003340096.1| exodeoxyribonuclease V [Streptosporangium roseum DSM 43021] gi|270509075|gb|ACZ87353.1| Exodeoxyribonuclease V [Streptosporangium roseum DSM 43021] Length = 738 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G ++A ++ A L II + + ++PG+ K Sbjct: 100 IKGIGPKMAERIVDHFGADTLQ--IIETAPERLVEVPGLGPK 139 >gi|167561490|ref|ZP_02354406.1| TPR domain protein [Burkholderia oklahomensis EO147] Length = 606 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG A Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPSSPRAAQVDAALLVLGGKPADA 163 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 164 QPMLAQELARATGENRGEAII--ALQAL 189 >gi|152970955|ref|YP_001336064.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955804|gb|ABR77834.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 588 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L ++ + + IA++PGIS +A +I LK Sbjct: 536 LETIEGVGPKRRQMLLKYMGGLQGLQQASVEE----IAKVPGISHALAEKIFYSLK 587 >gi|329955111|ref|ZP_08296092.1| recombination protein RecR [Bacteroides clarus YIT 12056] gi|328526401|gb|EGF53416.1| recombination protein RecR [Bacteroides clarus YIT 12056] Length = 205 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PG+ K A R++ L Sbjct: 14 VNEFAKLPGVGRKTAMRLVLHL 35 >gi|228985620|ref|ZP_04145773.1| cell wall hydrolase/autolysin [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774015|gb|EEM22428.1| cell wall hydrolase/autolysin [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 548 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLF 48 KIKGN+ G ++ +L+ + Y + L + IGD ++ Sbjct: 478 KIKGNVTGKSDNSILVSSNNITYEVETSTEVLQDII-IGDTVNVY 521 >gi|295103877|emb|CBL01421.1| Predicted DNA-binding protein with the Helix-hairpin-helix motif [Faecalibacterium prausnitzii SL3/3] Length = 452 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 61 FG-FLSDLDRQWFMLLQSVQGVGARVAMGV-----LSRITATELVES 101 +G F D++R F +L V G+G + A + + + EL Sbjct: 321 YGLFPVDVNRAPFEMLLRVPGIGPKSARRIWRARKQAALGLDELKRM 367 >gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145] gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145] Length = 679 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 19/115 (16%) Query: 72 FMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM----- 125 F+ ++GVG A + + T L ++ + + + + P + A I+ Sbjct: 517 FIYALGIRGVGETTARMLANTFQTLDALRQA----DLEALKKTPDVGDITAEWILDFFQA 572 Query: 126 ---TELKGKAIS----LSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLG 171 E+ + ++ + + +N E + S +A L LG Sbjct: 573 PHNLEVLDRLLAAGIHWDAPIAPTRQPLNGESWVVTGTLSSMGRDDATQLLQALG 627 >gi|257867867|ref|ZP_05647520.1| helicase RecD/TraA [Enterococcus casseliflavus EC30] gi|257874196|ref|ZP_05653849.1| helicase RecD/TraA [Enterococcus casseliflavus EC10] gi|257801950|gb|EEV30853.1| helicase RecD/TraA [Enterococcus casseliflavus EC30] gi|257808360|gb|EEV37182.1| helicase RecD/TraA [Enterococcus casseliflavus EC10] Length = 884 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%) Query: 107 SKVIA--QIPGISMKIASRIM 125 ++ + PGI K A +I+ Sbjct: 91 IAYLSGEKFPGIGKKTAEKIV 111 >gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska E43] gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska E43] Length = 667 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 25/181 (13%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90 TLSC ++ V + +D + + GF Q F L +S+ + ++ L Sbjct: 425 NTLSCKPQL---VKTIVH-YASRDAMNIAGFSEKTAEQLFEKLNIKSISDL-YKLKKEDL 479 Query: 91 SRIT------ATELVESIILQNSKVIAQ------IPGISMKIASRIMTELKG----KAIS 134 + A L+ ++ + IP + +K A I+ + K K + Sbjct: 480 INLEKFGDKKAENLLNAVEGSKECKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT 539 Query: 135 LSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD-QATTAVVSVLKKEKNIA 192 +V QD+ + + I+ I L++LG V S+ K + +A Sbjct: 540 FEELVSVQDVGDIVAQDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVA 599 Query: 193 D 193 Sbjct: 600 T 600 >gi|160942796|ref|ZP_02090037.1| hypothetical protein FAEPRAM212_00273 [Faecalibacterium prausnitzii M21/2] gi|158445961|gb|EDP22964.1| hypothetical protein FAEPRAM212_00273 [Faecalibacterium prausnitzii M21/2] Length = 452 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 61 FG-FLSDLDRQWFMLLQSVQGVGARVAMGV-----LSRITATELVES 101 +G F D++R F +L V G+G + A + + + EL Sbjct: 321 YGLFPVDVNRAPFEMLLRVPGIGPKSARRIWRARKQAALGLDELKRM 367 >gi|313608726|gb|EFR84551.1| ComE operon protein 1 [Listeria monocytogenes FSL F2-208] Length = 155 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 104 LQQVPGIGESKATAIIEHREKEGLFQTIED-----LKNVSGIGEKTVEKL 148 >gi|302389951|ref|YP_003825772.1| PHP domain protein [Thermosediminibacter oceani DSM 16646] gi|302200579|gb|ADL08149.1| PHP domain protein [Thermosediminibacter oceani DSM 16646] Length = 572 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 11/97 (11%) Query: 74 LLQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKIASRIMTE--- 127 + + G+GA+ + + T EL ++ + +PGI +K + + + Sbjct: 92 EMLKIPGLGAKRIKTIYDALNITTIDELEQAAKSH---KLRGLPGIGVKT-EQAILKGIQ 147 Query: 128 -LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 LKGKA + ++ K+ A Sbjct: 148 MLKGKAGKMLLSTALYLAEEIKDMLKFLPAVEKVEEA 184 >gi|269958956|ref|YP_003328745.1| excinuclease ABC subunit C [Anaplasma centrale str. Israel] gi|269848787|gb|ACZ49431.1| excinuclease ABC subunit C [Anaplasma centrale str. Israel] Length = 613 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L + GVG+ +++ + + + + I+++PGIS+K+A RI LK Sbjct: 556 LCDIPGVGSARRRALITYFGSIDGVKRARTDE----ISKVPGISIKLAQRIYAYLK 607 >gi|219670324|ref|YP_002460759.1| competence protein ComEA helix-hairpin-helix repeat protein [Desulfitobacterium hafniense DCB-2] gi|219540584|gb|ACL22323.1| competence protein ComEA helix-hairpin-helix repeat protein [Desulfitobacterium hafniense DCB-2] Length = 216 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 14/24 (58%) Query: 102 IILQNSKVIAQIPGISMKIASRIM 125 I ++ + ++PGI +A RI+ Sbjct: 156 INTADAAELDKLPGIGPALAERII 179 >gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] Length = 797 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 33/145 (22%) Query: 56 DQIRLFGFLSDLDRQ----WFMLL--QSVQGVGARVAMGVLSRI-TATELVESIILQNSK 108 + +RLF +L++ + L S++ VG A + + + T L + + Sbjct: 593 NTLRLF---DELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRAAAEAGDRD 649 Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA--- 163 +A+I G+ I+ + +L +D V++ A +M + Sbjct: 650 RLAEIDGVGP-----IIAD------ALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPR 698 Query: 164 -ISALV-----NL-GYGQDQATTAV 181 + L +L G+ +D A A+ Sbjct: 699 TLEGLTVVVTGSLEGFSRDSAKEAI 723 >gi|56416629|ref|YP_153703.1| excinuclease ABC subunit C [Anaplasma marginale str. St. Maries] gi|81359188|sp|Q5PB81|UVRC_ANAMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56387861|gb|AAV86448.1| excinuclease ABC subunit C [Anaplasma marginale str. St. Maries] Length = 613 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L + GVG+ +++ + + + + I+++PGIS+K+A RI LK Sbjct: 556 LCDIPGVGSARRRALITYFGSIDGVKRARTDE----ISKVPGISIKLAQRIYAYLK 607 >gi|56421096|ref|YP_148414.1| ATP-dependent exonuclease V [Geobacillus kaustophilus HTA426] gi|56380938|dbj|BAD76846.1| ATP-dependent exonuclease V [Geobacillus kaustophilus HTA426] Length = 786 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 28/101 (27%) Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 +G+G + A ++ + + +I+ + + + ++P ++ K A ++ Sbjct: 107 KGIGKKTAAAIVETLG-ENAIAAILR-DPRALERVPKLTKKKAKQL-------------- 150 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + AL LG+G A Sbjct: 151 ------------YDALRAHEGLEQTMIALAQLGFGPQLAMK 179 >gi|194335563|ref|YP_002017357.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1] gi|194308040|gb|ACF42740.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1] Length = 383 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R + L + G+G + ++ L + ++ + + Q+ GI +A ++ Sbjct: 8 EERILLLALTLIPGIGPAR-IKAITTFLHNRLAD-VLHCDVGELIQVSGIGESLARQM 63 >gi|317476230|ref|ZP_07935481.1| recombination protein RecR [Bacteroides eggerthii 1_2_48FAA] gi|316907641|gb|EFV29344.1| recombination protein RecR [Bacteroides eggerthii 1_2_48FAA] Length = 205 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PG+ K A R++ L Sbjct: 14 VNEFAKLPGVGRKTAMRLVLHL 35 >gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301] gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum JDM301] Length = 920 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 70 QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126 + +L S++ +G A + S + + + +I + + I G+ +IA ++ Sbjct: 751 DLWRVLVALSIRRLGPPTARLIASAMGS---LAAIENATIEDLTAIDGVGPEIAESVVNW 807 Query: 127 --------ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQA 177 + +G +L + + E + + + ++ +L GY +D A Sbjct: 808 FAAAREPGDWRG--ATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTG--SLEGYSRDSA 863 Query: 178 TTAVVS 183 A++ Sbjct: 864 KEAIIE 869 >gi|145294361|ref|YP_001137182.1| recombination protein RecR [Corynebacterium glutamicum R] gi|172044393|sp|A4QAN3|RECR_CORGB RecName: Full=Recombination protein recR gi|140844281|dbj|BAF53280.1| hypothetical protein [Corynebacterium glutamicum R] Length = 218 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 ++++PG+ K A RI L Sbjct: 13 LSRLPGVGPKSAQRIAFHL 31 >gi|89895894|ref|YP_519381.1| hypothetical protein DSY3148 [Desulfitobacterium hafniense Y51] gi|89335342|dbj|BAE84937.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 219 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 14/24 (58%) Query: 102 IILQNSKVIAQIPGISMKIASRIM 125 I ++ + ++PGI +A RI+ Sbjct: 159 INTADAAELDKLPGIGPALAERII 182 >gi|226944590|ref|YP_002799663.1| excinuclease ABC subunit C [Azotobacter vinelandii DJ] gi|259710334|sp|C1DIK7|UVRC_AZOVD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226719517|gb|ACO78688.1| excinuclease ABC, C subunit [Azotobacter vinelandii DJ] Length = 607 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG + +L EL + I + IA+ PGIS K+A I Sbjct: 554 LEEVAGVGPKRRRELLKFFGGLQELSRASIDE----IAKAPGISKKLADSI 600 >gi|313637785|gb|EFS03136.1| ComE operon protein 1 [Listeria seeligeri FSL S4-171] Length = 201 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ+V G+G A ++ L ++I + + GI K ++ Sbjct: 150 LQTVPGIGESKATAIIEYREKEGLFQTIED-----LQNVTGIGEKTIEKL 194 >gi|325106521|ref|YP_004276175.1| endonuclease III [Pedobacter saltans DSM 12145] gi|324975369|gb|ADY54353.1| endonuclease III [Pedobacter saltans DSM 12145] Length = 239 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 6/20 (30%), Positives = 13/20 (65%) Query: 102 IILQNSKVIAQIPGISMKIA 121 I+ ++ K + ++PG+ K A Sbjct: 104 IVPEDVKDLQKMPGVGRKTA 123 >gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] Length = 880 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 28/118 (23%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 Y + TLS L + +++ T +D I+L SD R +L + +GVG Sbjct: 108 GYEADDILGTLS-LDAEKEGYEVYIVTG-DRDAIQL---ASDNTR----VLITKKGVGEV 158 Query: 85 V---AMGVLS--RITATELVESIILQNSKVIAQ--------IPGISMKIASRIMTELK 129 A V+ +T + + + K + IPGI K +++ E K Sbjct: 159 EEYDAQAVMDRYSLTPDQFI------DLKGLMGDKSDNIPGIPGIGEKTGIKLLLEYK 210 >gi|297543596|ref|YP_003675898.1| recombination protein RecR [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841371|gb|ADH59887.1| recombination protein RecR [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 199 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++++PGI K A R+ Sbjct: 12 IEELSKLPGIGPKTAQRL 29 >gi|257876760|ref|ZP_05656413.1| helicase RecD/TraA [Enterococcus casseliflavus EC20] gi|257810926|gb|EEV39746.1| helicase RecD/TraA [Enterococcus casseliflavus EC20] Length = 884 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%) Query: 107 SKVIA--QIPGISMKIASRIM 125 ++ + PGI K A +I+ Sbjct: 91 IAYLSGEKFPGIGKKTAEKIV 111 >gi|303324063|ref|XP_003072019.1| BTB/POZ domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240111729|gb|EER29874.1| BTB/POZ domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 672 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I TEL+ K + + Q S + S+ S + G+ + Sbjct: 567 AQKIATELQDKMTIMPADAPQSGSDLGTSPYLSDSLGSSSQ---------GFTTPEEDEG 617 Query: 181 VVSVLKKEKNIADDSQIIR 199 V ++ + + IIR Sbjct: 618 VDALTNRLPKDSPTGPIIR 636 >gi|222474994|ref|YP_002563409.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str. Florida] gi|255002974|ref|ZP_05277938.1| excinuclease ABC subunit C [Anaplasma marginale str. Puerto Rico] gi|222419130|gb|ACM49153.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str. Florida] Length = 613 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L + GVG+ +++ + + + + I+++PGIS+K+A RI LK Sbjct: 556 LCDIPGVGSARRRALITYFGSIDGVKRARTDE----ISKVPGISIKLAQRIYAYLK 607 >gi|254430840|ref|ZP_05044543.1| excinuclease ABC, C subunit [Cyanobium sp. PCC 7001] gi|197625293|gb|EDY37852.1| excinuclease ABC, C subunit [Cyanobium sp. PCC 7001] Length = 667 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 17/106 (16%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQIRLFGFL------SDLDRQWFMLLQSV 78 ++ P + + L V+ +R + R F +R L + Sbjct: 541 EVFVPG---ARQPLESEAEQLGVQLLRRLRDEAHR---FAVSFHRQQRGERMKRSRLSDI 594 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 G+G + +L+ + +++I L + IA+ PG+ +A ++ Sbjct: 595 PGLGPKRVKDLLAHFRS---IDAIQLASPAQIAEAPGVGPALARQV 637 >gi|284053205|ref|ZP_06383415.1| recombination protein RecR [Arthrospira platensis str. Paraca] gi|291567039|dbj|BAI89311.1| recombination protein RecR [Arthrospira platensis NIES-39] Length = 208 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 6/20 (30%), Positives = 10/20 (50%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + ++PGI K A R+ Sbjct: 21 IEQFQRLPGIGPKTAQRLAL 40 >gi|203287906|ref|YP_002222921.1| recombination protein RecR [Borrelia recurrentis A1] gi|201085126|gb|ACH94700.1| recombination protein RecR [Borrelia recurrentis A1] Length = 194 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 18/27 (66%) Query: 101 SIILQNSKVIAQIPGISMKIASRIMTE 127 II ++++++PGI K A+R++ + Sbjct: 1 MIIQDLIELVSKLPGIGKKTAARMVYD 27 >gi|157737623|ref|YP_001490306.1| exodeoxyribonuclease V, alpha subunit [Arcobacter butzleri RM4018] gi|157699477|gb|ABV67637.1| exodeoxyribonuclease V, alpha subunit [Arcobacter butzleri RM4018] Length = 775 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 61 FG----FLSDL--DRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 +G F + + + F L V+GVG + A +L + + EL+E I+ + Sbjct: 66 YGVQFEFDTLELKEAEMFFFLTKIVKGVGKKFASELLEKYSENELIE-ILNDRPNELLNF 124 Query: 114 PGISMKIASRIM 125 GI K I+ Sbjct: 125 KGIKDKKLETIV 136 >gi|297171377|gb|ADI22381.1| nuclease subunit of the excinuclease complex [uncultured nuHF2 cluster bacterium HF0500_02A10] Length = 418 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Query: 47 LFVETHMRQDQIRLFGFLSDLDRQWFM------LLQSVQGVGA-RVAMGVLSRITATELV 99 L V +R + R F +R+ L + G+G + + +L + V Sbjct: 336 LHVLQRIRDEAHR---FAVTYNRKLRRNRTVSSDLSEIPGIGPEKQKLLLLRFGS----V 388 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128 +I N + IA+I G+ + +A RI+T L Sbjct: 389 RAIKSANVEEIAEISGLGLVLADRIITYL 417 >gi|313633203|gb|EFS00081.1| ComE operon protein 1 [Listeria seeligeri FSL N1-067] Length = 202 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ+V G+G A ++ L ++I + + GI K ++ Sbjct: 151 LQTVPGIGESKATAIIEYREKEGLFQTIED-----LQNVTGIGEKTIEKL 195 >gi|308048622|ref|YP_003912188.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799] gi|307630812|gb|ADN75114.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799] Length = 356 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 6/15 (40%), Positives = 10/15 (66%) Query: 110 IAQIPGISMKIASRI 124 + +IPG+ K A R+ Sbjct: 184 LRKIPGVGPKTAERL 198 >gi|291557374|emb|CBL34491.1| endonuclease III [Eubacterium siraeum V10Sc8a] Length = 212 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 16/25 (64%) Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131 + + ++PG+ K A+ I+ +L GK Sbjct: 109 IEQLVKLPGVGRKTANLIVGDLYGK 133 >gi|317126956|ref|YP_004093238.1| RuvA domain protein [Bacillus cellulosilyticus DSM 2522] gi|315471904|gb|ADU28507.1| RuvA domain protein [Bacillus cellulosilyticus DSM 2522] Length = 536 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 11/80 (13%) Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI + K Q M+ + + +A L LG+ D A AV Sbjct: 415 ERITVDQK-----------QVMNSLQEGAKRKNEQLQLIDDATFRLGMLGFNNDVAVKAV 463 Query: 182 VSVLKKEKNIADDSQIIRLA 201 + + + + SQI++ A Sbjct: 464 QKAISENNQLEEVSQIVKDA 483 >gi|289809921|ref|ZP_06540550.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 147 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 94 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 146 >gi|198275302|ref|ZP_03207833.1| hypothetical protein BACPLE_01461 [Bacteroides plebeius DSM 17135] gi|198271885|gb|EDY96155.1| hypothetical protein BACPLE_01461 [Bacteroides plebeius DSM 17135] Length = 236 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 A++PGI K A R++ L Sbjct: 48 FAKLPGIGRKTAMRLVLHL 66 >gi|167750867|ref|ZP_02422994.1| hypothetical protein EUBSIR_01851 [Eubacterium siraeum DSM 15702] gi|167656046|gb|EDS00176.1| hypothetical protein EUBSIR_01851 [Eubacterium siraeum DSM 15702] Length = 212 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 16/25 (64%) Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131 + + ++PG+ K A+ I+ +L GK Sbjct: 109 IEQLVKLPGVGRKTANLIVGDLYGK 133 >gi|167568720|ref|ZP_02361594.1| TPR domain protein [Burkholderia oklahomensis C6786] Length = 606 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG A Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPSSPRAAQVDAALLVLGGKPADA 163 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 164 QPMLAQELARATGENRGEAII--ALQAL 189 >gi|19551495|ref|NP_599497.1| recombination protein RecR [Corynebacterium glutamicum ATCC 13032] gi|62389142|ref|YP_224544.1| recombination protein RecR [Corynebacterium glutamicum ATCC 13032] gi|24212182|sp|Q8NTQ8|RECR_CORGL RecName: Full=Recombination protein recR gi|21323008|dbj|BAB97637.1| Recombinational DNA repair protein [Corynebacterium glutamicum ATCC 13032] gi|41324475|emb|CAF18815.1| DNA repair protein (RecF pathway) [Corynebacterium glutamicum ATCC 13032] Length = 218 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 ++++PG+ K A RI L Sbjct: 13 LSRLPGVGPKSAQRIAFHL 31 >gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1] gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1] gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8] Length = 691 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++GVG A+ + + EL I + + + +P I A I Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578 >gi|320537739|ref|ZP_08037664.1| ribosomal protein S1 [Treponema phagedenis F0421] gi|320145418|gb|EFW37109.1| ribosomal protein S1 [Treponema phagedenis F0421] Length = 803 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Query: 6 KGNIEGLYEDYVLIDVQGV--CYIIYCPIRTLSCLGKIGDFCTLFVE 50 +G I + +D V +DV G + P+ K GD +++E Sbjct: 266 EGIIIQVTDDTVFVDVGGKSEG---HVPLTEFETAPKKGDAVRVYIE 309 >gi|300857564|ref|YP_003782547.1| recombination protein [Corynebacterium pseudotuberculosis FRC41] gi|300685018|gb|ADK27940.1| recombination protein [Corynebacterium pseudotuberculosis FRC41] gi|302205304|gb|ADL09646.1| Recombination protein RecR [Corynebacterium pseudotuberculosis C231] gi|302329858|gb|ADL20052.1| Recombination protein RecR [Corynebacterium pseudotuberculosis 1002] gi|308275544|gb|ADO25443.1| Recombination protein RecR [Corynebacterium pseudotuberculosis I19] Length = 218 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 ++++PG+ K A RI L Sbjct: 13 LSRLPGVGPKSAQRIAFHL 31 >gi|291333596|gb|ADD93289.1| excinuclease ABC subunit C [uncultured archaeon MedDCM-OCT-S09-C13] Length = 575 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V G+GA+ +L + I + + + +PGI +A RI Sbjct: 523 LEDVLGLGAKKLQSLLRHFGG---RQGINNASIEDLKTVPGIGPSLAERI 569 >gi|262199755|ref|YP_003270964.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365] gi|262083102|gb|ACY19071.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365] Length = 586 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 17/102 (16%) Query: 72 FMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 F+ L + G+G + M + L + +L +++ +K + + G K Sbjct: 99 FVELSRIPGLGPKTLMRLRGELDVHSVDDLRKALE---AKKLRTLSGFGAKS-------- 147 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 +L +++ + I A +AL L Sbjct: 148 ---EDNLRRAIERLGMSGKDRRTPIADALPIAQRITAALEAL 186 >gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E] Length = 691 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++GVG A+ + + EL I + + + +P I A I Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578 >gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1] Length = 691 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++GVG A+ + + EL I + + + +P I A I Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578 >gi|312878631|ref|ZP_07738484.1| transposase [Caldicellulosiruptor lactoaceticus 6A] gi|311794593|gb|EFR11069.1| transposase [Caldicellulosiruptor lactoaceticus 6A] Length = 83 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 31 EEDLERLDTIPGVGRRTAEHIIAE 54 >gi|289577300|ref|YP_003475927.1| recombination protein RecR [Thermoanaerobacter italicus Ab9] gi|289527013|gb|ADD01365.1| recombination protein RecR [Thermoanaerobacter italicus Ab9] Length = 199 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++++PGI K A R+ Sbjct: 12 IEELSKLPGIGPKTAQRL 29 >gi|86748302|ref|YP_484798.1| excinuclease ABC subunit C [Rhodopseudomonas palustris HaA2] gi|119367824|sp|Q2J0X3|UVRC_RHOP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|86571330|gb|ABD05887.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris HaA2] Length = 695 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 16/104 (15%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81 ++ P R L + D F+ +R + R F+ R+ LQ + G+ Sbjct: 592 LFMPEREAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 646 Query: 82 GARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 G +L T E+ + L + + ++PGIS + A RI Sbjct: 647 GPSRKRALLHHFGTLKEIERA-SLGD---LGKVPGISAESARRI 686 >gi|289422277|ref|ZP_06424131.1| excinuclease ABC, C subunit [Peptostreptococcus anaerobius 653-L] gi|289157328|gb|EFD05939.1| excinuclease ABC, C subunit [Peptostreptococcus anaerobius 653-L] Length = 607 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125 L V G+G + + ++S+ ++ + I + I ++ GIS KIA I+ Sbjct: 550 LDDVPGIGPKRKLALISKFKDIDKIRSASIDE----IMEVDGISKKIAEDIV 597 >gi|254468692|ref|ZP_05082098.1| A/G-specific adenine glycosylase [beta proteobacterium KB13] gi|207087502|gb|EDZ64785.1| A/G-specific adenine glycosylase [beta proteobacterium KB13] Length = 294 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGI 116 F L + G+G A +LS + +I+ N K + + GI Sbjct: 68 DTFESLIQLPGIGRSTAGAILSFCFKKKF--AILDGNVKRVLTRFFGI 113 >gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521] gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521] gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E BL5262] Length = 663 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 34/167 (20%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL----------------Q 76 TLSC ++ V R+ + + GF Q F L Sbjct: 423 NTLSCKPQM---VKSIVHYACRE-AMNIAGFSERTAEQLFEKLNIKSISDLYKLKEEELI 478 Query: 77 SVQGVGARVAMGVLSRITAT---ELVESIILQNSKVIAQIPGISMKIASRIMTELKG--- 130 ++ G + A +L I + EL I IP + +K A +++ K Sbjct: 479 DLEKFGPKKAQNLLEAIENSKECELHAFI------YALGIPNVGVKTAKDLVSRFKSIEG 532 Query: 131 -KAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 K + +V D+ + + + I L+ LG Sbjct: 533 LKNATFEELVSVPDVGDIVAQDVMSFFKEEKVLETIDELLALGVNPK 579 >gi|157961351|ref|YP_001501385.1| recombination protein RecR [Shewanella pealeana ATCC 700345] gi|189029375|sp|A8H2R3|RECR_SHEPA RecName: Full=Recombination protein recR gi|157846351|gb|ABV86850.1| recombination protein RecR [Shewanella pealeana ATCC 700345] Length = 199 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL++ + +PG+ K A R+ +L + + + ++ E H Sbjct: 7 VDELIQ--------SLRCLPGVGPKSAQRMAFQLLERDRKAGAKLADSLAKAMSEVGHCQ 58 Query: 155 SMPSFAIN 162 S +F Sbjct: 59 SCRTFTEE 66 >gi|71278497|ref|YP_270358.1| recombination protein RecR [Colwellia psychrerythraea 34H] gi|123631494|sp|Q47XW2|RECR_COLP3 RecName: Full=Recombination protein recR gi|71144237|gb|AAZ24710.1| recombination protein RecR [Colwellia psychrerythraea 34H] Length = 201 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + +PG+ K A R+ +L + S + ++ + H +F A+ Sbjct: 11 IDSLKCLPGVGAKSAQRMAFQLLERNRRGGSKLANTLAKAMTDIGHCQQCRNFTEEAL 68 >gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72] Length = 691 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++GVG A+ + + EL I + + + +P I A I Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578 >gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169] Length = 691 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++GVG A+ + + EL I + + + +P I A I Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578 >gi|323223339|gb|EGA07675.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 297 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 244 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 296 >gi|313673334|ref|YP_004051445.1| DNA replication and repair protein recr [Calditerrivibrio nitroreducens DSM 19672] gi|312940090|gb|ADR19282.1| DNA replication and repair protein RecR [Calditerrivibrio nitroreducens DSM 19672] Length = 200 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 14/22 (63%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 K ++++PGI K A R+ +L Sbjct: 11 IKELSKLPGIGKKTALRLSMQL 32 >gi|309790483|ref|ZP_07685043.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6] gi|308227470|gb|EFO81138.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6] Length = 625 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ + G+G + +L + + ++ I + IA +PG++ + A ++ Sbjct: 575 LEEIPGIGPKRKKALLKAFGSLDGIRQATIDE----IAAVPGMTKRAAEQL 621 >gi|282877375|ref|ZP_06286198.1| recombination protein RecR [Prevotella buccalis ATCC 35310] gi|281300427|gb|EFA92773.1| recombination protein RecR [Prevotella buccalis ATCC 35310] Length = 203 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 14 VNEFSKLPGIGRKTALRLVLHL 35 >gi|270684462|ref|ZP_06222837.1| UvrABC system, protein C [Haemophilus influenzae HK1212] gi|270316201|gb|EFA28168.1| UvrABC system, protein C [Haemophilus influenzae HK1212] Length = 118 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L++++GVGA+ +L + + ++ + + IA +PGIS+K+A RI LK Sbjct: 65 LETIEGVGAKRRQALLKYLGGLQGVKKATLDE----IASVPGISLKLAERIFETLKN 117 >gi|290961316|ref|YP_003492498.1| ABC excision nuclease subunit C [Streptomyces scabiei 87.22] gi|260650842|emb|CBG73959.1| ABC excision nuclease subunit C [Streptomyces scabiei 87.22] Length = 676 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 18/93 (19%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L ++ D F T+ R + ++ F L V G+G +L Sbjct: 548 LYLLQRVRDEAHRFAITYQR----------TKRAKR-FRASPLDDVPGLGEARKQALLKH 596 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRI 124 + +L + I Q I ++PGI K A I Sbjct: 597 FGSLKKLRSATIDQ----ICEVPGIGRKTAETI 625 >gi|260438631|ref|ZP_05792447.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876] gi|292809225|gb|EFF68430.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876] Length = 450 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQIRLFGFLSD----LDRQWFMLLQS 77 V Y + + S L G + +R +GF + R F +L Sbjct: 257 VFYSAFVNVNNDSTLPSALNGPPLLREHRLYQADWLMRFYGFKAQDILSEARPDFNVL-- 314 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 V + A+ L I + + ++PGI + A RI+ Sbjct: 315 ---VDPKCDWALRHLEYFPVE-----INRADYYSLLKVPGIGVNSAKRII 356 >gi|257053376|ref|YP_003131209.1| 50S ribosomal protein L32e [Halorhabdus utahensis DSM 12940] gi|256692139|gb|ACV12476.1| Ribosomal protein L32e [Halorhabdus utahensis DSM 12940] Length = 335 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 74 LLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124 L V G+G A + T +L E+ + + ++ GI +A+RI Sbjct: 8 ELTDVSGIGEETAGALRESGFETIDDLREA----DEDALTEVTGIGNALAARI 56 >gi|163755946|ref|ZP_02163063.1| recombination protein recR [Kordia algicida OT-1] gi|161324117|gb|EDP95449.1| recombination protein recR [Kordia algicida OT-1] Length = 206 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%) Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 E ++ I+Q+PGI + A R++ L Sbjct: 2 EFSSKLLENAVNEISQLPGIGKRTALRLVLHL 33 >gi|16332099|ref|NP_442827.1| recombination protein RecR [Synechocystis sp. PCC 6803] gi|3024523|sp|P74533|RECR_SYNY3 RecName: Full=Recombination protein recR gi|1653728|dbj|BAA18639.1| recombination protein [Synechocystis sp. PCC 6803] Length = 232 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 8/45 (17%) Query: 84 RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + +G + L+E + ++P + K A R+ L Sbjct: 31 KRGLGTIYTPPLARLIE--------QLQRLPSVGPKTAQRLALHL 67 >gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1] Length = 691 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++GVG A+ + + EL I + + + +P I A I Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578 >gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7] Length = 691 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++GVG A+ + + EL I + + + +P I A I Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578 >gi|313889750|ref|ZP_07823392.1| helicase, RecD/TraA family [Streptococcus pseudoporcinus SPIN 20026] gi|313121795|gb|EFR44892.1| helicase, RecD/TraA family [Streptococcus pseudoporcinus SPIN 20026] Length = 805 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 9/67 (13%) Query: 113 IPGISMKIASRIMTELK-----GKAISLSSVVQQDMSCVNKEQAHICS---MPSFAINAI 164 GI K A +I+ +L K + S ++ + + + I Sbjct: 95 FKGIGKKTAEKIV-QLYGENTIDKILEDPSQLETISGLSKANRQAFITKLKLNYGTEQII 153 Query: 165 SALVNLG 171 + LV LG Sbjct: 154 AGLVALG 160 >gi|260888483|ref|ZP_05899746.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185] gi|330838208|ref|YP_004412788.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185] gi|260861680|gb|EEX76180.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185] gi|329745972|gb|AEB99328.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185] Length = 727 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +R F+ ++ GVG +A ++ + L II + + ++ G+ K A++I Sbjct: 82 ER--FLASGAIAGVGEAMAHRLVQKFGKETLE--IIEKKPSRLTEVAGVGKKTAAKI 134 >gi|206581932|pdb|3CMA|Y Chain Y, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|206581965|pdb|3CME|Y Chain Y, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui Length = 240 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 72 FMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124 + L + GVG A + + ++ + + +A + GI +A+RI Sbjct: 14 YTELTDISGVGPSKAESLREAGFESVEDVRGA----DQSALADVSGIGNALAARI 64 >gi|254384741|ref|ZP_05000079.1| exodeoxyribonuclease V [Streptomyces sp. Mg1] gi|194343624|gb|EDX24590.1| exodeoxyribonuclease V [Streptomyces sp. Mg1] Length = 748 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G ++A ++ L +I K + ++PG+ K Sbjct: 99 IKGIGPKIADRIVEHFGLDTLE--VIESEPKRLIEVPGLGPK 138 >gi|3925822|dbj|BAA34648.1| RecR protein [Deinococcus radiodurans] Length = 220 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LV I ++++PGI K A R+ L Sbjct: 4 PPSLVSLIRE-----LSRLPGIGPKSAQRLAFHL 32 >gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1] Length = 691 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++GVG A+ + + EL I + + + +P I A I Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578 >gi|322835054|ref|YP_004215081.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602] gi|321170255|gb|ADW75954.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602] Length = 565 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 G G +L A L+ + N K +A +PGI +K A ++M Sbjct: 437 GFGGATWQKLLDASPADSLISWLSF-NEKELAAVPGIGVKQAQKLM 481 >gi|319892647|ref|YP_004149522.1| Late competence protein ComEA, DNA receptor [Staphylococcus pseudintermedius HKU10-03] gi|317162343|gb|ADV05886.1| Late competence protein ComEA, DNA receptor [Staphylococcus pseudintermedius HKU10-03] gi|323464315|gb|ADX76468.1| ComE operon protein 1, putative [Staphylococcus pseudintermedius ED99] Length = 222 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + +++ L + G+G A ++ +S+ + + GI K ++ Sbjct: 166 TADEKE----LTQIPGIGPSKAQTIIKHREENGPFQSVED-----LKNVKGIGEKTFEKL 216 >gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4] gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4] Length = 691 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 F+ ++GVG A+ + + EL I + + + +P I A I Sbjct: 529 FIFALGIRGVGESTALSLAQQFG--ELQSIIEA-DLQALQAVPDIGEITAQSI 578 >gi|293373050|ref|ZP_06619419.1| recombination protein RecR [Bacteroides ovatus SD CMC 3f] gi|292632118|gb|EFF50727.1| recombination protein RecR [Bacteroides ovatus SD CMC 3f] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 17 FSKLPGIGRKTAMRLVLHL 35 >gi|262407940|ref|ZP_06084488.1| recombination protein RecR [Bacteroides sp. 2_1_22] gi|294644003|ref|ZP_06721785.1| recombination protein RecR [Bacteroides ovatus SD CC 2a] gi|294807757|ref|ZP_06766550.1| recombination protein RecR [Bacteroides xylanisolvens SD CC 1b] gi|262354748|gb|EEZ03840.1| recombination protein RecR [Bacteroides sp. 2_1_22] gi|292640656|gb|EFF58892.1| recombination protein RecR [Bacteroides ovatus SD CC 2a] gi|294445193|gb|EFG13867.1| recombination protein RecR [Bacteroides xylanisolvens SD CC 1b] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 17 FSKLPGIGRKTAMRLVLHL 35 >gi|260170498|ref|ZP_05756910.1| recombination protein RecR [Bacteroides sp. D2] gi|315918842|ref|ZP_07915082.1| recombination protein recR [Bacteroides sp. D2] gi|313692717|gb|EFS29552.1| recombination protein recR [Bacteroides sp. D2] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 17 FSKLPGIGRKTAMRLVLHL 35 >gi|237720984|ref|ZP_04551465.1| recombination protein recR [Bacteroides sp. 2_2_4] gi|229449819|gb|EEO55610.1| recombination protein recR [Bacteroides sp. 2_2_4] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 17 FSKLPGIGRKTAMRLVLHL 35 >gi|255691811|ref|ZP_05415486.1| recombination protein RecR [Bacteroides finegoldii DSM 17565] gi|260622529|gb|EEX45400.1| recombination protein RecR [Bacteroides finegoldii DSM 17565] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 17 FSKLPGIGRKTAMRLVLHL 35 >gi|169237523|ref|YP_001690727.1| hypothetical protein OE5289R [Halobacterium salinarum R1] gi|167728750|emb|CAP15609.1| hypothetical protein OE5289R [Halobacterium salinarum R1] Length = 478 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 14/85 (16%) Query: 75 LQSVQGVGARVA--MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L++V GVG R A + + +L ++ IAQ+ GI K A R + E Sbjct: 199 LETVTGVGHRRAELLNNAEIRSRADLAQA----EVYEIAQLDGIGKKTA-RTIVE----- 248 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMP 157 + VV+Q + V +++ P Sbjct: 249 --SAEVVEQREARVAPDESLPSREP 271 >gi|29346491|ref|NP_809994.1| recombination protein RecR [Bacteroides thetaiotaomicron VPI-5482] gi|253568105|ref|ZP_04845516.1| recombination protein recR [Bacteroides sp. 1_1_6] gi|298387732|ref|ZP_06997283.1| recombination protein RecR [Bacteroides sp. 1_1_14] gi|73621464|sp|Q8A8T6|RECR_BACTN RecName: Full=Recombination protein recR gi|29338387|gb|AAO76188.1| recombination protein recR [Bacteroides thetaiotaomicron VPI-5482] gi|251842178|gb|EES70258.1| recombination protein recR [Bacteroides sp. 1_1_6] gi|298259588|gb|EFI02461.1| recombination protein RecR [Bacteroides sp. 1_1_14] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 17 FSKLPGIGRKTAMRLVLHL 35 >gi|91790880|ref|YP_551831.1| ERCC4 [Polaromonas sp. JS666] gi|91700760|gb|ABE46933.1| ERCC4 [Polaromonas sp. JS666] Length = 217 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%) Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 G G A +L + E V + + + GI K A +I Sbjct: 164 PGCGPGTAKKLLGHFGSAERVFAAS---VDELCAVKGIGRKTADQI 206 >gi|332882336|ref|ZP_08449964.1| recombination protein RecR [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679720|gb|EGJ52689.1| recombination protein RecR [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PGI K A R++ L Sbjct: 14 VNEFAKLPGIGSKTAMRLVLHL 35 >gi|330996287|ref|ZP_08320172.1| recombination protein RecR [Paraprevotella xylaniphila YIT 11841] gi|329573479|gb|EGG55086.1| recombination protein RecR [Paraprevotella xylaniphila YIT 11841] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PGI K A R++ L Sbjct: 14 VNEFAKLPGIGSKTAMRLVLHL 35 >gi|322373724|ref|ZP_08048260.1| helicase, RecD/TraA family [Streptococcus sp. C150] gi|321278766|gb|EFX55835.1| helicase, RecD/TraA family [Streptococcus sp. C150] Length = 834 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 15/97 (15%) Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK-----GKAISLSSVVQQ--DM 143 S+ +A+ L++ N GI K A RI+ +L K + S ++Q ++ Sbjct: 80 SKPSASGLIKYFSSDN------FKGIGKKTAERIV-DLYGEDPIDKILKDPSKLEQIPNL 132 Query: 144 SCVNKEQ-AHICSMPSFAINAISALVNLGYGQDQATT 179 S VN+E + +S L + G A+ Sbjct: 133 SKVNREAFVAKLKINYGTEQILSKLSSYGLTPKAASQ 169 >gi|298484196|ref|ZP_07002361.1| recombination protein RecR [Bacteroides sp. D22] gi|299145431|ref|ZP_07038499.1| recombination protein RecR [Bacteroides sp. 3_1_23] gi|298269609|gb|EFI11205.1| recombination protein RecR [Bacteroides sp. D22] gi|298515922|gb|EFI39803.1| recombination protein RecR [Bacteroides sp. 3_1_23] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 17 FSKLPGIGRKTAMRLVLHL 35 >gi|237716337|ref|ZP_04546818.1| recombination protein recR [Bacteroides sp. D1] gi|229443984|gb|EEO49775.1| recombination protein recR [Bacteroides sp. D1] Length = 220 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 32 FSKLPGIGRKTAMRLVLHL 50 >gi|220918862|ref|YP_002494166.1| recombination protein RecR [Anaeromyxobacter dehalogenans 2CP-1] gi|219956716|gb|ACL67100.1| recombination protein RecR [Anaeromyxobacter dehalogenans 2CP-1] Length = 198 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 K +A++PGI K A R+ Sbjct: 11 VKELARLPGIGEKTAQRL 28 >gi|197124083|ref|YP_002136034.1| recombination protein RecR [Anaeromyxobacter sp. K] gi|196173932|gb|ACG74905.1| recombination protein RecR [Anaeromyxobacter sp. K] Length = 198 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 K +A++PGI K A R+ Sbjct: 11 VKELARLPGIGEKTAQRL 28 >gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT] gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT] Length = 664 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 63/213 (29%), Gaps = 55/213 (25%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL----------------Q 76 TLSC ++ V R+ + + GF Q F L Sbjct: 425 NTLSCKPQL---VKSIVHFGSRE-AMNIAGFSEKTAEQLFEELEIKSISDLYRIKKEDLL 480 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVI------AQIPGISMKIASRIMTELKG 130 + G + A L+++I + IP + K + T+L Sbjct: 481 KLNRFGEKKA---------QNLIDAIESSKECDLPSFIYALGIPNVGKKTS----TDLCK 527 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---------AISALVNLGYGQDQATTAV 181 K +L ++ + + + + ++ +I L++LG + Sbjct: 528 KFKTLDNLKKAKFEELVSVEDIGDIVAQSVLDFFNDETILKSIDELLSLGVTPKFKEEEI 587 Query: 182 VSVLKKEKNIADDSQI-------IRLALRAISC 207 + K + + I+ L+++ Sbjct: 588 KENIFNGKTVVVTGSLSSFSRNEIKEKLQSLGA 620 >gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242] gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242] Length = 769 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI--MTELKGK 131 + S+ +G A +L VE+++ + ++ I K A ++ + K K Sbjct: 713 VSSISNIGPNAAKNLLDHFGT---VENVMKAELDELKEVKNIGPKTAGKMREILSSKYK 768 >gi|15805234|ref|NP_293922.1| recombination protein RecR [Deinococcus radiodurans R1] gi|7388065|sp|Q9ZNA2|RECR_DEIRA RecName: Full=Recombination protein recR gi|151568115|pdb|2V1C|A Chain A, Crystal Structure And Mutational Study Of Recor Provide Insight Into Its Role In Dna Repair gi|151568116|pdb|2V1C|B Chain B, Crystal Structure And Mutational Study Of Recor Provide Insight Into Its Role In Dna Repair gi|6457868|gb|AAF09785.1|AE001882_3 recR protein [Deinococcus radiodurans R1] Length = 220 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LV I ++++PGI K A R+ L Sbjct: 4 PPSLVSLIRE-----LSRLPGIGPKSAQRLAFHL 32 >gi|194336096|ref|YP_002017890.1| helicase, RecD/TraA family [Pelodictyon phaeoclathratiforme BU-1] gi|194308573|gb|ACF43273.1| helicase, RecD/TraA family [Pelodictyon phaeoclathratiforme BU-1] Length = 738 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 V+GVG R+A ++ V ++I + + + +PG+ K +I+ Sbjct: 100 VKGVGHRLAKVLVRTYGME--VFTVIEDHPEQLLGLPGVGKKKLQQIV 145 >gi|325263748|ref|ZP_08130481.1| radical SAM domain protein [Clostridium sp. D5] gi|324030786|gb|EGB92068.1| radical SAM domain protein [Clostridium sp. D5] Length = 443 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 24/129 (18%) Query: 24 VCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIRL--FGFLSDL---DRQW-FMLLQ 76 V Y + + S L + G+ L E + Q L + F + ++ F + Sbjct: 258 VFYSAFVSVNEDSALPARTGEGPPLLREHRLYQADWLLRYYQFEAAELLDEKNPNFNIFL 317 Query: 77 SVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 + A+ L + + ++ ++PGI +K A+RI+ KA Sbjct: 318 D-----PKCDWALKHLEYFPVE-----VNRADYSMLLRVPGIGVKSATRIV-----KARR 362 Query: 135 LSSVVQQDM 143 + ++ +D+ Sbjct: 363 MGTLQFEDL 371 >gi|299144508|ref|ZP_07037587.1| recombination protein RecR [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517596|gb|EFI41336.1| recombination protein RecR [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 199 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Query: 107 SKVIAQIPGISMKIASRI---MTELK-GKAISLSSVVQQDMSCV 146 + ++PG+ K A R+ + ++ K +LS + V Sbjct: 12 INQLNKLPGVGNKTAQRLAYHIIDMDFEKVKALSDAITSAKENV 55 >gi|164686924|ref|ZP_02210952.1| hypothetical protein CLOBAR_00524 [Clostridium bartlettii DSM 16795] gi|164604027|gb|EDQ97492.1| hypothetical protein CLOBAR_00524 [Clostridium bartlettii DSM 16795] Length = 199 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 + +++PGI K A R+ Sbjct: 12 IEEFSKLPGIGKKTAQRL 29 >gi|258611456|ref|ZP_05232459.2| comE operon protein 1 [Listeria monocytogenes FSL N3-165] gi|258600152|gb|EEW13477.1| comE operon protein 1 [Listeria monocytogenes FSL N3-165] Length = 203 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 152 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 196 >gi|153806693|ref|ZP_01959361.1| hypothetical protein BACCAC_00964 [Bacteroides caccae ATCC 43185] gi|149131370|gb|EDM22576.1| hypothetical protein BACCAC_00964 [Bacteroides caccae ATCC 43185] Length = 205 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 17 FSKLPGIGRKTAMRLVLHL 35 >gi|86160053|ref|YP_466838.1| recombination protein RecR [Anaeromyxobacter dehalogenans 2CP-C] gi|123496736|sp|Q2IFP4|RECR_ANADE RecName: Full=Recombination protein recR gi|85776564|gb|ABC83401.1| recombination protein RecR [Anaeromyxobacter dehalogenans 2CP-C] Length = 198 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 K +A++PGI K A R+ Sbjct: 11 VKELAKLPGIGEKTAQRL 28 >gi|15827213|ref|NP_301476.1| excinuclease ABC subunit C [Mycobacterium leprae TN] gi|221229691|ref|YP_002503107.1| excinuclease ABC subunit C [Mycobacterium leprae Br4923] gi|21264123|sp|Q9CCP1|UVRC_MYCLE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764939|sp|B8ZUN5|UVRC_MYCLB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|13092761|emb|CAC30070.1| putative excinuclease ABC subunit C [Mycobacterium leprae] gi|219932798|emb|CAR70655.1| putative excinuclease ABC subunit C [Mycobacterium leprae Br4923] Length = 647 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 22/117 (18%) Query: 18 LIDVQGVCY-----IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL------SD 66 +IDV + ++ P + LF+ +R + R F Sbjct: 524 IIDVAVIGLAKRLEEVWVPFEPYPVIMPRNSEA-LFLLQRVRDEAHR---FAITYHRSKR 579 Query: 67 LDRQWFMLLQSVQGVGA--RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 R L SV G+GA R A+ V + L ++ + Q I +PGI + A Sbjct: 580 SKRMTASALDSVPGLGAHRRKAL-VTHFGSIARLKDATVEQ----ITAVPGIGVATA 631 >gi|55378369|ref|YP_136219.1| 50S ribosomal protein L32e [Haloarcula marismortui ATCC 43049] gi|132885|sp|P12736|RL32_HALMA RecName: Full=50S ribosomal protein L32e; AltName: Full=Hl5 gi|50513494|pdb|1S72|Y Chain Y, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution gi|66360808|pdb|1YHQ|Y Chain Y, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360841|pdb|1YI2|Y Chain Y, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360874|pdb|1YIJ|Y Chain Y, Crystal Structure Of Telithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360907|pdb|1YIT|Y Chain Y, Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360940|pdb|1YJ9|Y Chain Y, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22 gi|66360973|pdb|1YJN|Y Chain Y, Crystal Structure Of Clindamycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66361006|pdb|1YJW|Y Chain Y, Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|83753149|pdb|1VQ4|Y Chain Y, The Structure Of The Transition State Analogue "daa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753181|pdb|1VQ5|Y Chain Y, The Structure Of The Transition State Analogue "raa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753213|pdb|1VQ6|Y Chain Y, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753245|pdb|1VQ7|Y Chain Y, The Structure Of The Transition State Analogue "dca" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753276|pdb|1VQ8|Y Chain Y, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753308|pdb|1VQ9|Y Chain Y, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753339|pdb|1VQK|Y Chain Y, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of The Ribosomal Subunit Of Haloarcula Marismortui gi|83753370|pdb|1VQL|Y Chain Y, The Structure Of The Transition State Analogue "dcsn" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753401|pdb|1VQM|Y Chain Y, The Structure Of The Transition State Analogue "dan" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753433|pdb|1VQN|Y Chain Y, The Structure Of Cc-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753464|pdb|1VQO|Y Chain Y, The Structure Of Ccpmn Bound To The Large Ribosomal Subunit Haloarcula Marismortui gi|83753496|pdb|1VQP|Y Chain Y, The Structure Of The Transition State Analogue "rap" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|145580196|pdb|2OTJ|Y Chain Y, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui gi|145580227|pdb|2OTL|Y Chain Y, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui gi|171848861|pdb|2QA4|Y Chain Y, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit gi|188596026|pdb|3CC2|Y Chain Y, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins gi|188596057|pdb|3CC4|Y Chain Y, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit gi|188596088|pdb|3CC7|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u gi|188596119|pdb|3CCE|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a gi|188596150|pdb|3CCJ|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u gi|188596181|pdb|3CCL|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model. gi|188596212|pdb|3CCM|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u gi|188596243|pdb|3CCQ|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u gi|188596274|pdb|3CCR|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model. gi|188596305|pdb|3CCS|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a gi|188596336|pdb|3CCU|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c gi|188596367|pdb|3CCV|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a gi|188596398|pdb|3CD6|Y Chain Y, Co-Cystal Of Large Ribosomal Subunit Mutant G2616a With Cc- Puromycin gi|194368728|pdb|3CPW|X Chain X, The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|208435518|pdb|2QEX|Y Chain Y, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit gi|290790060|pdb|3I55|Y Chain Y, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit gi|290790091|pdb|3I56|Y Chain Y, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit gi|48865|emb|CAA41288.1| ribosomal protein [Haloarcula marismortui] gi|55231094|gb|AAV46513.1| 50S ribosomal protein L32E [Haloarcula marismortui ATCC 43049] gi|228188|prf||1718307E ribosomal protein HL5 Length = 241 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 72 FMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124 + L + GVG A + + ++ + + +A + GI +A+RI Sbjct: 14 YTELTDISGVGPSKAESLREAGFESVEDVRGA----DQSALADVSGIGNALAARI 64 >gi|47095437|ref|ZP_00233047.1| comE operon protein 1 [Listeria monocytogenes str. 1/2a F6854] gi|258612162|ref|ZP_05268183.2| comE operon protein 1 [Listeria monocytogenes F6900] gi|293596550|ref|ZP_05262170.2| comE operon protein 1 [Listeria monocytogenes J2818] gi|47016258|gb|EAL07181.1| comE operon protein 1 [Listeria monocytogenes str. 1/2a F6854] gi|258609079|gb|EEW21687.1| comE operon protein 1 [Listeria monocytogenes F6900] gi|293590130|gb|EFF98464.1| comE operon protein 1 [Listeria monocytogenes J2818] Length = 211 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 160 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 204 >gi|297526558|ref|YP_003668582.1| glycerophosphoryl diester phosphodiesterase [Staphylothermus hellenicus DSM 12710] gi|297255474|gb|ADI31683.1| glycerophosphoryl diester phosphodiesterase [Staphylothermus hellenicus DSM 12710] Length = 231 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 21/98 (21%) Query: 24 VCY---IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 + Y + + K+ + L+ + ++L GF + L +V+ Sbjct: 145 IGYNIGSVEAAMNAF----KLHEKLKLY-SINPPIQGLQLLGFEKFRE-----YLVNVRR 194 Query: 81 VGARVAM------GVLSRITATELVESIILQNSKVIAQ 112 VGA+ + G+L + ELV+++I N + + + Sbjct: 195 VGAKTVLWTVDDPGLLKGL--EELVDAVITNNVEALIK 230 >gi|294812739|ref|ZP_06771382.1| Exodeoxyribonuclease V [Streptomyces clavuligerus ATCC 27064] gi|326441110|ref|ZP_08215844.1| putative exodeoxyribonuclease V [Streptomyces clavuligerus ATCC 27064] gi|294325338|gb|EFG06981.1| Exodeoxyribonuclease V [Streptomyces clavuligerus ATCC 27064] Length = 735 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G R+A ++ L +I + K + ++PG+ K Sbjct: 94 IKGIGPRIAERIVDHFGVDTLD--VIEREPKRLIEVPGLGPK 133 >gi|225020186|ref|ZP_03709378.1| hypothetical protein CORMATOL_00188 [Corynebacterium matruchotii ATCC 33806] gi|305680112|ref|ZP_07402922.1| recombination protein RecR [Corynebacterium matruchotii ATCC 14266] gi|224946930|gb|EEG28139.1| hypothetical protein CORMATOL_00188 [Corynebacterium matruchotii ATCC 33806] gi|305660732|gb|EFM50229.1| recombination protein RecR [Corynebacterium matruchotii ATCC 14266] Length = 218 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 ++++PG+ K A RI L Sbjct: 13 LSRLPGVGPKSAQRIAFHL 31 >gi|254166800|ref|ZP_04873654.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|289596077|ref|YP_003482773.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|197624410|gb|EDY36971.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|289533864|gb|ADD08211.1| ERCC4 domain protein [Aciduliprofundum boonei T469] Length = 221 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 SD + + + L S+ +G ++A +L + +E I N + ++ GI K A +I Sbjct: 161 SDEEWKIY-ALSSLPYIGEKIAKALLEHFGS---IEKIARANIVELKKVEGIGDKKARQI 216 >gi|119367679|sp|Q3SPL2|UVRC_NITWN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 689 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 14/103 (13%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81 ++ P R L + D F+ +R + R F+ R+ LQ V G+ Sbjct: 586 LFLPDRPAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRRKDIREAGLQEVPGI 640 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 G +L L E I + + ++PGIS + A RI Sbjct: 641 GPARKRALLHHFGT--LKE-IERASLADLGKVPGISAESARRI 680 >gi|90415789|ref|ZP_01223722.1| endonuclease III [marine gamma proteobacterium HTCC2207] gi|90332163|gb|EAS47360.1| endonuclease III [marine gamma proteobacterium HTCC2207] Length = 217 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Query: 80 GVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 G+ + A+ VLS++ + + ++ + K + +PG+ K A Sbjct: 81 GLAPQKSSAISVLSKMLVEQ-YDGVVPDDWKALESLPGVGHKTA 123 >gi|15825966|pdb|1JJ2|X Chain X, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution gi|20151011|pdb|1KQS|X Chain X, The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis gi|22218945|pdb|1K8A|Z Chain Z, Co-Crystal Structure Of Carbomycin A Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22218979|pdb|1K9M|Z Chain Z, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22219022|pdb|1KD1|Z Chain Z, Co-Crystal Structure Of Spiramycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22219349|pdb|1M1K|Z Chain Z, Co-Crystal Structure Of Azithromycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|24159044|pdb|1M90|Z Chain Z, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And Sparsomycin Bound To The 50s Ribosomal Subunit gi|34811141|pdb|1K73|Z Chain Z, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit gi|34811171|pdb|1KC8|Z Chain Z, Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit gi|34811210|pdb|1N8R|Z Chain Z, Structure Of Large Ribosomal Subunit In Complex With Virginiamycin M gi|34811240|pdb|1NJI|Z Chain Z, Structure Of Chloramphenicol Bound To The 50s Ribosomal Subunit gi|37927924|pdb|1Q7Y|Z Chain Z, Crystal Structure Of Ccdap-Puromycin Bound At The Peptidyl Transferase Center Of The 50s Ribosomal Subunit gi|37927959|pdb|1Q81|Z Chain Z, Crystal Structure Of Minihelix With 3' Puromycin Bound To A- Site Of The 50s Ribosomal Subunit. gi|37927995|pdb|1Q82|Z Chain Z, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of The 50s Ribosomal Subunit gi|37928031|pdb|1Q86|Z Chain Z, Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit. gi|39654696|pdb|1QVF|X Chain X, Structure Of A Deacylated Trna Minihelix Bound To The E Site Of The Large Ribosomal Subunit Of Haloarcula Marismortui gi|39654729|pdb|1QVG|X Chain X, Structure Of Cca Oligonucleotide Bound To The Trna Binding Sites Of The Large Ribosomal Subunit Of Haloarcula Marismortui gi|55670559|pdb|1W2B|X Chain X, Trigger Factor Ribosome Binding Domain In Complex With 50s gi|228311935|pdb|3CXC|X Chain X, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound To The 50s Ribosomal Subunit Of H. Marismortui Length = 240 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 72 FMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI 124 + L + GVG A + + ++ + + +A + GI +A+RI Sbjct: 13 YTELTDISGVGPSKAESLREAGFESVEDVRGA----DQSALADVSGIGNALAARI 63 >gi|305663906|ref|YP_003860194.1| ERCC4 domain protein [Ignisphaera aggregans DSM 17230] gi|304378475|gb|ADM28314.1| ERCC4 domain protein [Ignisphaera aggregans DSM 17230] Length = 239 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 10/94 (10%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 + + Q ++ LQ +G ++A+ +L + + + + + + +I G+ K AS Sbjct: 149 STVEEWQIYI-LQCFPNIGPKIALRILEELGSIHRFCNASLSE----LMRIEGLGEKKAS 203 Query: 123 ---RIMTEL-KGKAISLSSVVQQDMSCVNKEQAH 152 +I+ L K + +S D E A+ Sbjct: 204 EIYQIIHALYKDRKEKSTSKTIVDYMKNENEDAN 237 >gi|254390680|ref|ZP_05005893.1| exodeoxyribonuclease V [Streptomyces clavuligerus ATCC 27064] gi|197704380|gb|EDY50192.1| exodeoxyribonuclease V [Streptomyces clavuligerus ATCC 27064] Length = 745 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G R+A ++ L +I + K + ++PG+ K Sbjct: 104 IKGIGPRIAERIVDHFGVDTLD--VIEREPKRLIEVPGLGPK 143 >gi|218294871|ref|ZP_03495725.1| recombination protein RecR [Thermus aquaticus Y51MC23] gi|218244779|gb|EED11303.1| recombination protein RecR [Thermus aquaticus Y51MC23] Length = 194 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 10/42 (23%) Query: 107 SKVIAQIPGISMKIASRIMT----------ELKGKAISLSSV 138 ++ ++++PGI K A ++ ELK +L + Sbjct: 11 ARALSRLPGIGPKTAQKLALFLAFHKEVAEELKEGLAALRDL 52 >gi|209543162|ref|YP_002275391.1| helicase, RecD/TraA family [Gluconacetobacter diazotrophicus PAl 5] gi|209530839|gb|ACI50776.1| helicase, RecD/TraA family [Gluconacetobacter diazotrophicus PAl 5] Length = 728 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++G+G A ++ E V +I Q + ++ GI K A RI+ Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERIV 145 >gi|330979500|gb|EGH78103.1| radical SAM family protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 406 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L G + ++A + +R + +L ++ + +IA++P Sbjct: 286 YGF-TASE------LLDGPGDLALDIDPKLAWALGNRQVFPLDLNQA----DPALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|330943879|gb|EGH46116.1| radical SAM family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 127 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L G + ++A + +R + +L ++ + +IA++P Sbjct: 7 YGF-TASE------LLDGPGDLALDIDPKLAWALGNRQVFPLDLNQA----DPALIARVP 55 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 56 GIGIRTTQRLV-ELR 69 >gi|330901031|gb|EGH32450.1| radical SAM family protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 406 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L G + ++A + +R + +L ++ + +IA++P Sbjct: 286 YGF-TASE------LLDGPGDLALDIDPKLAWALGNRQVFPLDLNQA----DPALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|315637400|ref|ZP_07892613.1| exodeoxyribonuclease V alpha subunit [Arcobacter butzleri JV22] gi|315478292|gb|EFU69012.1| exodeoxyribonuclease V alpha subunit [Arcobacter butzleri JV22] Length = 565 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 61 FG----FLSDL--DRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 +G F + + + F L V+GVG + A +L + + EL+E I+ + Sbjct: 66 YGVQFEFDTLELKEAEMFFFLTKIVKGVGKKFASELLEKYSENELIE-ILNDRPNELLNF 124 Query: 114 PGISMKIASRIM 125 GI K I+ Sbjct: 125 KGIKDKKLETIV 136 >gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] Length = 939 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 23/125 (18%) Query: 62 GF---LSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVE------------SIILQ 105 GF ++ DR F L+ +V + + + L RI E+ + + Sbjct: 158 GFQVLITTGDRDAFQLVTENVTVLYPKRGVSDLGRIDPAEVDNRYGLTPEQYPDFAALRG 217 Query: 106 NSK-VIAQIPGISMKIASRIM------TELKGKAISLSSVVQQDMSCVNKEQAHICSMPS 158 + + IPG+ K A++ + EL + + + + Sbjct: 218 DPSDNLPSIPGVGEKTAAKWVREFGSLAELTDRVDEVKGKAGDALRANLANVLLNRQLTE 277 Query: 159 FAINA 163 + Sbjct: 278 LVRDV 282 >gi|320354018|ref|YP_004195357.1| recombination protein RecR [Desulfobulbus propionicus DSM 2032] gi|320122520|gb|ADW18066.1| recombination protein RecR [Desulfobulbus propionicus DSM 2032] Length = 203 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMT 126 L I + ++PGI K A+R+ Sbjct: 5 PPALERLIAD-----LTRLPGIGRKTATRLAL 31 >gi|294012246|ref|YP_003545706.1| excinuclease ABC subunit C [Sphingobium japonicum UT26S] gi|292675576|dbj|BAI97094.1| excinuclease ABC subunit C [Sphingobium japonicum UT26S] Length = 637 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V G+G +L + V+S L++ + + PG+S +A ++ Sbjct: 585 LDEVPGIGPSRKKALLMHFGTAKAVKSAALED---LLKAPGVSKAVAQQV 631 >gi|213615666|ref|ZP_03371492.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 155 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 102 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 154 >gi|170289532|ref|YP_001739770.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermotoga sp. RQ2] gi|170177035|gb|ACB10087.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga sp. RQ2] Length = 181 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 20/127 (15%) Query: 73 MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L S+ G+G A ++ R + + + + GI K +I + Sbjct: 55 EDLMSIPGIGPVKAQRIIDYRESHGGFSS------VEELKNVSGIGEKTLEKI-----SR 103 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 +++ V Q V K + S+ L L Y + A+V +K Sbjct: 104 YVTVEGVEQHIKREVTKLNVNTASVEE--------LETLPYIGEVKAKAIVEYREKNGPF 155 Query: 192 ADDSQII 198 ++ Sbjct: 156 RSPEDLL 162 >gi|153006598|ref|YP_001380923.1| recombination protein RecR [Anaeromyxobacter sp. Fw109-5] gi|171769313|sp|A7HGU3|RECR_ANADF RecName: Full=Recombination protein recR gi|152030171|gb|ABS27939.1| recombination protein RecR [Anaeromyxobacter sp. Fw109-5] Length = 198 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 K +A++PGI K A R+ Sbjct: 11 VKELAKLPGIGEKTAQRL 28 >gi|72162420|ref|YP_290077.1| excinuclease ABC subunit C [Thermobifida fusca YX] gi|90111761|sp|Q47NB5|UVRC_THEFY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71916152|gb|AAZ56054.1| Excinuclease ABC subunit C [Thermobifida fusca YX] Length = 656 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G +L + L ++ + IA++PGI + A I Sbjct: 588 LDDIPGLGPVRRAALLKHFGSVRRLAQATAAE----IAEVPGIGERTAQTI 634 >gi|330836582|ref|YP_004411223.1| RNA binding S1 domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748485|gb|AEC01841.1| RNA binding S1 domain protein [Spirochaeta coccoides DSM 17374] Length = 571 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%) Query: 5 IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFVET 51 + G + + +YV +D V Y P+ + + G+ +F+ T Sbjct: 37 VTGTVIQVNNEYVFVD---VGYKSEGRIPLDEFDVIPEDGEKVKVFIIT 82 >gi|307544647|ref|YP_003897126.1| recombination protein RecR [Halomonas elongata DSM 2581] gi|307216671|emb|CBV41941.1| recombination protein RecR [Halomonas elongata DSM 2581] Length = 201 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%) Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167 +PG+ K A R+ L + + + + ++ + + I AL Sbjct: 17 LPGVGPKTAQRMAMHLLERDREGGQRLAEVLGVALEQVGYCQRCRTLTEETICAL 71 >gi|205374269|ref|ZP_03227068.1| ComE operon protein 1 [Bacillus coahuilensis m4-4] Length = 199 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 17/90 (18%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLD-RQWF--------MLLQSVQGVGARVAMGVL 90 KI D +++ + +G + R+ F L+++ G+G A ++ Sbjct: 107 KIQDEMVIYIPEKGEVEFQ--YGVSQTEEKRELFINLNTATKEELETLPGIGPAKAEAII 164 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKI 120 L SI I +PGI K Sbjct: 165 -TYRDETLFSSIEE-----IENVPGIGTKT 188 >gi|329117808|ref|ZP_08246525.1| comEA protein [Streptococcus parauberis NCFD 2020] gi|326908213|gb|EGE55127.1| comEA protein [Streptococcus parauberis NCFD 2020] Length = 225 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 7/52 (13%) Query: 74 LLQSVQGVGARVAMGVL-SRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G + A ++ +R L++ + +I GI K ++ Sbjct: 173 QLTKIPGIGEKRAHEIIEARDKMGGFKS---LED---LTKISGIGKKTLEKM 218 >gi|297561956|ref|YP_003680930.1| excinuclease ABC, C subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846404|gb|ADH68424.1| excinuclease ABC, C subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 675 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 16/90 (17%) Query: 35 LSCLGKIGDFCTLF-VETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI 93 L L ++ D F ++ H + L G S + G+G ++ Sbjct: 568 LYLLQRVRDEAHRFAIQYHRHKRAKALTG-SSLDEL---------PGLGPSRRTALIKAF 617 Query: 94 -TATELVESIILQNSKVIAQIPGISMKIAS 122 + L + + IA +PGI K+A Sbjct: 618 GSVRRLASATAEE----IAAVPGIGPKLAE 643 >gi|271967572|ref|YP_003341768.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270510747|gb|ACZ89025.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 560 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 6/51 (11%) Query: 73 MLLQSVQGVGARVAMGVLSRI---TATELVESIILQNSKVIAQIPGISMKI 120 L + +G + A+ + + + L E+I + + G K Sbjct: 89 RRLTRIASLGPKKAVFLFQELGIDSPEALAEAIGQG---RLKGLKGFGPKT 136 >gi|225181515|ref|ZP_03734957.1| recombination protein RecR [Dethiobacter alkaliphilus AHT 1] gi|225167763|gb|EEG76572.1| recombination protein RecR [Dethiobacter alkaliphilus AHT 1] Length = 198 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 5/17 (29%), Positives = 10/17 (58%) Query: 107 SKVIAQIPGISMKIASR 123 + + ++PG+ K A R Sbjct: 11 IESLQKLPGVGPKTAQR 27 >gi|188997418|ref|YP_001931669.1| hypothetical protein SYO3AOP1_1513 [Sulfurihydrogenibium sp. YO3AOP1] gi|188932485|gb|ACD67115.1| hypothetical protein SYO3AOP1_1513 [Sulfurihydrogenibium sp. YO3AOP1] Length = 106 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 10/58 (17%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L+S+ + + + T +L I + + +IP I K A I+ K + Sbjct: 24 TLKSIN-INPK------PKFTENDLKIDINTADIITLQRIPYIGEKTAELII---KDR 71 >gi|75676710|ref|YP_319131.1| excinuclease ABC subunit C [Nitrobacter winogradskyi Nb-255] gi|74421580|gb|ABA05779.1| Excinuclease ABC subunit C [Nitrobacter winogradskyi Nb-255] Length = 666 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 14/103 (13%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81 ++ P R L + D F+ +R + R F+ R+ LQ V G+ Sbjct: 563 LFLPDRPAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRRKDIREAGLQEVPGI 617 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 G +L L E I + + ++PGIS + A RI Sbjct: 618 GPARKRALLHHFGT--LKE-IERASLADLGKVPGISAESARRI 657 >gi|49259537|pdb|1VDD|A Chain A, Crystal Structure Of Recombinational Repair Protein Recr gi|49259538|pdb|1VDD|B Chain B, Crystal Structure Of Recombinational Repair Protein Recr gi|49259539|pdb|1VDD|C Chain C, Crystal Structure Of Recombinational Repair Protein Recr gi|49259540|pdb|1VDD|D Chain D, Crystal Structure Of Recombinational Repair Protein Recr Length = 228 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LV I ++++PGI K A R+ L Sbjct: 4 PPSLVSLIRE-----LSRLPGIGPKSAQRLAFHL 32 >gi|16803524|ref|NP_465009.1| hypothetical protein lmo1484 [Listeria monocytogenes EGD-e] gi|16410913|emb|CAC99562.1| comEA [Listeria monocytogenes EGD-e] Length = 200 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 149 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 193 >gi|46907712|ref|YP_014101.1| DNA-binding protein ComEA [Listeria monocytogenes serotype 4b str. F2365] gi|47094098|ref|ZP_00231823.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858] gi|258611690|ref|ZP_05241456.2| comE operon protein [Listeria monocytogenes FSL R2-503] gi|293596847|ref|ZP_05264778.2| comE operon protein [Listeria monocytogenes HPB2262] gi|300764851|ref|ZP_07074841.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017] gi|11991257|gb|AAG42266.1|AF320589_1 competence protein 1 [Listeria monocytogenes] gi|46880981|gb|AAT04278.1| DNA-binding protein, ComEA family [Listeria monocytogenes serotype 4b str. F2365] gi|47017528|gb|EAL08336.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858] gi|258605410|gb|EEW18018.1| comE operon protein [Listeria monocytogenes FSL R2-503] gi|293582969|gb|EFF95001.1| comE operon protein [Listeria monocytogenes HPB2262] gi|300514527|gb|EFK41584.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017] Length = 211 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 160 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 204 >gi|331008691|gb|EGH88747.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 406 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|330985965|gb|EGH84068.1| radical SAM domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 406 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|330963669|gb|EGH63929.1| radical SAM domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 406 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|330891098|gb|EGH23759.1| radical SAM domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 406 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|330876229|gb|EGH10378.1| radical SAM domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 406 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|320328395|gb|EFW84398.1| radical SAM domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 403 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 283 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 331 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 332 GIGIRTTQRLV-ELR 345 >gi|319902361|ref|YP_004162089.1| DNA replication and repair protein RecR [Bacteroides helcogenes P 36-108] gi|319417392|gb|ADV44503.1| DNA replication and repair protein RecR [Bacteroides helcogenes P 36-108] Length = 205 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 A++PG+ K A R++ L Sbjct: 14 VSEFAKLPGVGRKTAMRLVLHL 35 >gi|313888962|ref|ZP_07822622.1| recombination protein RecR [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845135|gb|EFR32536.1| recombination protein RecR [Peptoniphilus harei ACS-146-V-Sch2b] Length = 200 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 7/18 (38%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 K + ++PGI K A R+ Sbjct: 12 IKRLNRLPGIGSKTAQRL 29 >gi|298487074|ref|ZP_07005125.1| Radical SAM domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158427|gb|EFH99496.1| Radical SAM domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 406 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|289626330|ref|ZP_06459284.1| radical SAM domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646592|ref|ZP_06477935.1| radical SAM domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330868288|gb|EGH02997.1| radical SAM domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 406 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|269792359|ref|YP_003317263.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099994|gb|ACZ18981.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 653 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 32/118 (27%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLF----VETHMRQDQIRLFGFLSDLD----- 68 ++++QG Y ++ ++ L ++ L+ +E + IR GF + Sbjct: 336 ILELQGEGYA----LKDMAILYRVNALSRLYEQRLIEAGIPYRVIRGLGFYDRKEIKDVL 391 Query: 69 ---------RQW--FMLLQSVQ--GVGAR------VAMGVLSRITATELVESIILQNS 107 R F + +V G+GA+ MG L E S++ ++ Sbjct: 392 ALMRLAIQPRDLVSFERMVNVPQRGIGAKSTEALWAWMGQLEAQDPGEFWRSVLEGDA 449 >gi|257488019|ref|ZP_05642060.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 131 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 11 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 59 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 60 GIGIRTTQRLV-ELR 73 >gi|255030876|ref|ZP_05302827.1| hypothetical protein LmonL_20341 [Listeria monocytogenes LO28] Length = 199 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 148 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 192 >gi|229823581|ref|ZP_04449650.1| hypothetical protein GCWU000282_00879 [Catonella morbi ATCC 51271] gi|229787025|gb|EEP23139.1| hypothetical protein GCWU000282_00879 [Catonella morbi ATCC 51271] Length = 198 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRI---MTELK 129 ++PGI K A+R+ + ++K Sbjct: 11 INSFTKLPGIGAKTAARLAFYVLDMK 36 >gi|219990739|gb|ACL68743.1| MIP02859p [Drosophila melanogaster] Length = 153 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 + M ++ L+ + N K + +IPGI K AS + Sbjct: 78 PKAWMANNTKC----LLGHLNNGNVKQLQEIPGIGSKTASILAL 117 >gi|213969947|ref|ZP_03398080.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1] gi|301382220|ref|ZP_07230638.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tomato Max13] gi|302061323|ref|ZP_07252864.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tomato K40] gi|302134262|ref|ZP_07260252.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925272|gb|EEB58834.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1] gi|331014467|gb|EGH94523.1| radical SAM domain-containing protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 406 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|170078351|ref|YP_001734989.1| recombination protein [Synechococcus sp. PCC 7002] gi|169886020|gb|ACA99733.1| recombination protein [Synechococcus sp. PCC 7002] Length = 189 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 6/20 (30%), Positives = 10/20 (50%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + ++PGI K A R+ Sbjct: 2 IEQFQRLPGIGPKTAQRLAL 21 >gi|71733960|ref|YP_274696.1| radical SAM domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554513|gb|AAZ33724.1| radical SAM domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 406 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 61 FGFLSDLDRQWFMLLQSVQG-----VGARVAMGVLSR-ITATELVESIILQNSKVIAQIP 114 +GF + + L S G + ++A + +R + +L ++ ++ +IA++P Sbjct: 286 YGF-TAGE------LLSGPGDLALDIDPKLAWALGNRQVFPLDLNKA----DAALIARVP 334 Query: 115 GISMKIASRIMTELK 129 GI ++ R++ EL+ Sbjct: 335 GIGIRTTQRLV-ELR 348 >gi|114567594|ref|YP_754748.1| exodeoxyribonuclease V [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338529|gb|ABI69377.1| Exodeoxyribonuclease V [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 732 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++G+G +A ++ R L II + ++ GI K I Sbjct: 90 IKGIGPVMAKRIVQRFGVEALD--IIENQPDRLQEVNGIGPKRVEMI 134 >gi|162146783|ref|YP_001601244.1| exodeoxyribonuclease V alpha chain [Gluconacetobacter diazotrophicus PAl 5] gi|161785360|emb|CAP54908.1| putative exodeoxyribonuclease V alpha chain [Gluconacetobacter diazotrophicus PAl 5] Length = 728 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++G+G A ++ E V +I Q + ++ GI K A RI+ Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERIV 145 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMKIASRI 124 R+ + L S GVG A+ + + +I +N +A+ I GI K A +I Sbjct: 155 REIMLFLHS-NGVGTSRAVRIFKTYGQDAVR--LISENPYRLAKDIRGIGFKTADQI 208 >gi|76801124|ref|YP_326132.1| carboxypeptidase [Natronomonas pharaonis DSM 2160] gi|76556989|emb|CAI48563.1| predicted carboxypeptidase [Natronomonas pharaonis DSM 2160] Length = 506 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Query: 120 IASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++ EL+ + L ++ D E A AL LGY Sbjct: 179 TAERVLEELRDGLVPLIDAIGASDTELYALEGTFPEDDQFAVTEA--ALETLGYD 231 >gi|324993816|gb|EGC25735.1| endopeptidase O [Streptococcus sanguinis SK405] gi|324994863|gb|EGC26776.1| endopeptidase O [Streptococcus sanguinis SK678] Length = 689 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%) Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 AL LGY + ++ V L+ + +A +Q Sbjct: 226 EALKKLGYSEKESEKIVKEALEFDGELAKYAQ 257 >gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1] Length = 724 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 562 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 609 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 610 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 667 >gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1] gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2] gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1] Length = 740 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|312897986|ref|ZP_07757395.1| helicase, RecD/TraA family [Megasphaera micronuciformis F0359] gi|310620911|gb|EFQ04462.1| helicase, RecD/TraA family [Megasphaera micronuciformis F0359] Length = 720 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 11/66 (16%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI---------AS 122 F+ +V G+G +A +++ + + I++ + + ++ GI K A Sbjct: 86 FLASGAVDGIGPALAKRLVNAFGSETMK--IMMNEPERLKEVEGIGPKKLTALTASLQAE 143 Query: 123 RIMTEL 128 + + EL Sbjct: 144 KDVNEL 149 >gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165] gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165] Length = 753 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 591 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 638 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 639 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 696 >gi|254478030|ref|ZP_05091414.1| Transposase domain protein [Carboxydibrachium pacificum DSM 12653] gi|214036034|gb|EEB76724.1| Transposase domain protein [Carboxydibrachium pacificum DSM 12653] Length = 287 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 248 EEDLERLDTIPGVGRRTAEHIIAE 271 >gi|147920405|ref|YP_685820.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon RC-I] gi|110621216|emb|CAJ36494.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon RC-I] Length = 574 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 25/152 (16%) Query: 3 GKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG 62 ++G+IE Y++ L D+ GV I + L + G L ET ++ + L+ Sbjct: 39 SSLEGDIEEYYKEGRLRDIPGVGPSI---GSVIEELLRTGRSGLL--ETLKKETPLELY- 92 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMK 119 + V G+G + A+ V L T E ++ I +I G+ K Sbjct: 93 -----------EVIEVPGIGRKTALKVHRALGVATIEEFRDAARSH---RIRRIKGLGDK 138 Query: 120 IASRIM--TELKGKAISLSSVVQQDMSCVNKE 149 + +I+ + KA+S + + S + E Sbjct: 139 VEKKILDALDRHNKALSETRIPVFRASAIAAE 170 >gi|15643810|ref|NP_228858.1| comEA protein-related protein [Thermotoga maritima MSB8] gi|4981594|gb|AAD36129.1|AE001765_8 comEA protein-related protein [Thermotoga maritima MSB8] Length = 181 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 20/127 (15%) Query: 73 MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L S+ G+G A ++ R + + + + GI K +I + Sbjct: 55 EDLMSIPGIGPVKAQRIIDYRESHGGFSS------VEELKNVSGIGEKTLEKI-----SR 103 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 +++ V Q V K + S+ L L Y + A+V +K Sbjct: 104 YVTVEGVEQHIKREVTKLNVNTASVEE--------LETLPYIGEVKAKAIVEYREKNGPF 155 Query: 192 ADDSQII 198 ++ Sbjct: 156 RSPEDLL 162 >gi|27065203|pdb|1KFT|A Chain A, Solution Structure Of The C-Terminal Domain Of Uvrc From E- Coli Length = 78 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 75 LQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 26 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 77 >gi|293596227|ref|ZP_05229458.2| comE operon protein [Listeria monocytogenes FSL J1-194] gi|293593694|gb|EFG01455.1| comE operon protein [Listeria monocytogenes FSL J1-194] Length = 211 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 160 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 204 >gi|224500497|ref|ZP_03668846.1| hypothetical protein LmonF1_12841 [Listeria monocytogenes Finland 1988] gi|224501576|ref|ZP_03669883.1| hypothetical protein LmonFR_03497 [Listeria monocytogenes FSL R2-561] gi|254829757|ref|ZP_05234412.1| hypothetical protein Lmon1_00310 [Listeria monocytogenes 10403S] gi|254898350|ref|ZP_05258274.1| hypothetical protein LmonJ_01005 [Listeria monocytogenes J0161] gi|284801871|ref|YP_003413736.1| hypothetical protein LM5578_1626 [Listeria monocytogenes 08-5578] gi|284995013|ref|YP_003416781.1| hypothetical protein LM5923_1578 [Listeria monocytogenes 08-5923] gi|284057433|gb|ADB68374.1| hypothetical protein LM5578_1626 [Listeria monocytogenes 08-5578] gi|284060480|gb|ADB71419.1| hypothetical protein LM5923_1578 [Listeria monocytogenes 08-5923] Length = 200 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 149 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 193 >gi|257440779|ref|ZP_05616534.1| helicase, RecD/TraA family [Faecalibacterium prausnitzii A2-165] gi|257196753|gb|EEU95037.1| helicase, RecD/TraA family [Faecalibacterium prausnitzii A2-165] Length = 737 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F+ S+ +GAR A ++ + A L +I + + IPGIS A RI E K Sbjct: 84 FLASGSLPYIGARTANKIIDKFGAAALE--VIANDPAQLTLIPGISADKADRIQQEFK 139 >gi|258513085|ref|YP_003189342.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01] gi|256634988|dbj|BAI00963.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01] gi|256638043|dbj|BAI04011.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-03] gi|256641097|dbj|BAI07058.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-07] gi|256644152|dbj|BAI10106.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-22] gi|256647207|dbj|BAI13154.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-26] gi|256650260|dbj|BAI16200.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-32] gi|256653251|dbj|BAI19184.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656304|dbj|BAI22230.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-12] Length = 739 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMKIASRI 124 R+ + L S GVG A+ + + +I +N +A+ I GI K A +I Sbjct: 156 REIMLFLHS-NGVGTSRAVRIFKTYGQDAVR--LISENPYRLAKDIRGIGFKTADQI 209 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++G+G A ++ E V +I Q + ++ GI K A RI+ Sbjct: 101 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPHRLREVTGIGPKRAERIV 146 >gi|15612599|ref|NP_240902.1| recombination protein RecR [Bacillus halodurans C-125] gi|20139779|sp|Q9KGM3|RECR_BACHD RecName: Full=Recombination protein recR gi|10172648|dbj|BAB03755.1| DNA repair and genetic recombination [Bacillus halodurans C-125] Length = 198 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRI---MTELK 129 + ++PGI K ASR+ + E+K Sbjct: 11 IEGFMRLPGIGPKTASRLAFFVLEMK 36 >gi|309811791|ref|ZP_07705565.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185] gi|308434212|gb|EFP58070.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185] Length = 667 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L + G+G +L+ + L I ++ + ++ GI +A I+ L+ Sbjct: 599 LDGIAGLGPAKQKALLAHFGS--LKR-IRAADADALCEVKGIGPTLAETIVRSLR 650 >gi|302545283|ref|ZP_07297625.1| RecD/TraA family helicase [Streptomyces hygroscopicus ATCC 53653] gi|302462901|gb|EFL25994.1| RecD/TraA family helicase [Streptomyces himastatinicus ATCC 53653] Length = 760 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G R+A + L +I + K + ++PG+ K Sbjct: 119 IKGIGPRIADRITEHFGVDTLD--VIEEQPKRLIEVPGLGPK 158 >gi|322419014|ref|YP_004198237.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125401|gb|ADW12961.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 396 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 54/227 (23%) Query: 6 KGNIEGLYEDYVLIDVQGV-----CYIIYCPIRTLSCLGKIGD---FCTLFVETHMRQDQ 57 +G + + ++ V++D+ G+ Y ++ + L L I L D Sbjct: 9 RGRVLIIDDEKVILDLTGIILKNRGYQVFTALSALEGLETIEIERPELVLLDYMMPNMDG 68 Query: 58 IR-------LFG------FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV----- 99 + L+ F + + L A + +L +LV Sbjct: 69 LTALKEIKRLYPDTYVIMFTGKGSEEIAVELMK-----AGASDYILKPFNNQDLVERIES 123 Query: 100 ----ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS 155 I LQN ++++ R++ E++ L + V + +++ QA + Sbjct: 124 VLKLRGIELQNKALLSER--------ERLLAEIEDWNRELEARVHEKSEALSRAQAEVVQ 175 Query: 156 MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLAL 202 L +LGY + + +IA Q+I+ L Sbjct: 176 SEK--------LASLGYL---SAGMAHEIRNPLNSIALFVQLIKGGL 211 >gi|255027258|ref|ZP_05299244.1| hypothetical protein LmonocytFSL_14638 [Listeria monocytogenes FSL J2-003] Length = 200 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 149 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 193 >gi|291531143|emb|CBK96728.1| endonuclease III [Eubacterium siraeum 70/3] Length = 212 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 16/25 (64%) Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131 + + ++PG+ K A+ I+ +L GK Sbjct: 109 IEELVKLPGVGRKTANLIVGDLYGK 133 >gi|158522683|ref|YP_001530553.1| RecD/TraA family helicase [Desulfococcus oleovorans Hxd3] gi|158511509|gb|ABW68476.1| helicase, RecD/TraA family [Desulfococcus oleovorans Hxd3] Length = 736 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 VQGVG +A + +I + +A++PGI A I Sbjct: 90 VQGVGTAMARKITRHFGKETFS--VIENQPERLAEVPGIGAATALMI 134 >gi|149197730|ref|ZP_01874780.1| RNA binding domain protein, S1 [Lentisphaera araneosa HTCC2155] gi|149139300|gb|EDM27703.1| RNA binding domain protein, S1 [Lentisphaera araneosa HTCC2155] Length = 705 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 LL V G+G ++A +L+ ++ L +N + ++P + K+ + Sbjct: 488 ELLSYVSGIGPKLAEAILNYRSSEGLF-----KNRNELKKVPRLGDKVFEQ 533 >gi|53757751|gb|AAU92042.1| polyphosphate kinase [Methylococcus capsulatus str. Bath] Length = 785 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 41/102 (40%), Gaps = 9/102 (8%) Query: 65 SDLDRQWFMLLQS-VQGVGARVAMGVLSR---ITATELVESIILQNSKVIAQIPGISMKI 120 + +++ L+ S V+G+ + +L+ + EL ++ + + +IPG+S + Sbjct: 7 NRTEKEGGRLVISKVKGIS-KSTRIMLAEHGIFSVEELADA----DVGRLTKIPGLSRQK 61 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 A R++ K + + + + S ++ Sbjct: 62 ALRMVRAAKFMVGDMEKGRDEVSAGTGSAETAEISSADVGLD 103 >gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2] Length = 740 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|226224085|ref|YP_002758192.1| integral membrane protein ComEA [Listeria monocytogenes Clip81459] gi|254992214|ref|ZP_05274404.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL J2-064] gi|255520858|ref|ZP_05388095.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL J1-175] gi|225876547|emb|CAS05256.1| Putative integral membrane protein ComEA [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465525|gb|EGF36754.1| ComEA family DNA-binding protein [Listeria monocytogenes 1816] gi|332311926|gb|EGJ25021.1| DNA-binding protein, ComEA family [Listeria monocytogenes str. Scott A] Length = 200 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 149 LQQVPGIGESKATAIIEYREKEGLFQTIED-----LKNVSGIGEKTVEKL 193 >gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187] gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137] gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187] gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137] gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266] Length = 753 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 591 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 638 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 639 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 696 >gi|302390661|ref|YP_003826482.1| DNA replication and repair protein RecR [Thermosediminibacter oceani DSM 16646] gi|302201289|gb|ADL08859.1| DNA replication and repair protein RecR [Thermosediminibacter oceani DSM 16646] Length = 198 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++++PGI K A R+ Sbjct: 12 IEELSRLPGIGPKTAQRL 29 >gi|284166895|ref|YP_003405174.1| excinuclease ABC subunit C [Haloterrigena turkmenica DSM 5511] gi|284016550|gb|ADB62501.1| excinuclease ABC, C subunit [Haloterrigena turkmenica DSM 5511] Length = 597 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 15/103 (14%) Query: 27 IIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV----QGVG 82 + P RT S D L + +R + R F + +++V GVG Sbjct: 501 RVVTPDRTFSW---PSDAPHLHLLQRVRDEAHR---FAVQYHQTVRDEVKTVLDDVPGVG 554 Query: 83 ARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 +L R + + E+ + + + + GI K A I Sbjct: 555 PETRKRLLGRFGSVENVREA-SVDDIE---SVEGIGEKTAETI 593 >gi|224825434|ref|ZP_03698539.1| PHP domain protein [Lutiella nitroferrum 2002] gi|224602355|gb|EEG08533.1| PHP domain protein [Lutiella nitroferrum 2002] Length = 573 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 L S+ G+G + + L+ + + L + ++ Q+PG K+ +++ Sbjct: 96 LLSIPGLGPKRVRTLYHELAITSPSHLQHAAEQG---LVRQLPGFGPKLEQQLL 146 >gi|206890014|ref|YP_002248896.1| recombination protein RecR [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741952|gb|ACI21009.1| recombination protein RecR [Thermodesulfovibrio yellowstonii DSM 11347] Length = 197 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 11/18 (61%) Query: 107 SKVIAQIPGISMKIASRI 124 + + ++PGI K A R+ Sbjct: 9 IENLCKLPGIGRKTAQRL 26 >gi|330885591|gb|EGH19740.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str. race 4] Length = 138 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 84 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 131 >gi|163790362|ref|ZP_02184794.1| helicase, putative, RecD/TraA family protein [Carnobacterium sp. AT7] gi|159874433|gb|EDP68505.1| helicase, putative, RecD/TraA family protein [Carnobacterium sp. AT7] Length = 834 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 9/60 (15%) Query: 107 SKVIA--QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 ++ + PGI K A I+ EL L +S A I + I Sbjct: 98 IAYLSSDKFPGIGKKTAETIV-EL------LGDDAIDQISADETVLAKIPGLNDKKKEVI 150 >gi|94496331|ref|ZP_01302908.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58] gi|94424077|gb|EAT09101.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58] Length = 637 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L V G+G +L V L++ +A+ PG+S +A ++ Sbjct: 585 LDEVPGIGPARKKALLMHFGTARAVRDAALED---LAKAPGVSKAVAQQV 631 >gi|15673722|ref|NP_267896.1| exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp. lactis Il1403] gi|12724760|gb|AAK05838.1|AE006404_5 exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp. lactis Il1403] gi|326407225|gb|ADZ64296.1| exodeoxyribonuclease V alpha subunit [Lactococcus lactis subsp. lactis CV56] Length = 834 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 6/14 (42%), Positives = 9/14 (64%) Query: 112 QIPGISMKIASRIM 125 + PGI K A +I+ Sbjct: 97 KFPGIGKKTAEKIV 110 >gi|77406947|ref|ZP_00783967.1| competence protein CelA [Streptococcus agalactiae H36B] gi|77174444|gb|EAO77293.1| competence protein CelA [Streptococcus agalactiae H36B] Length = 178 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ GVGA+ A +L + ++I + + GI K ++ Sbjct: 127 LQTISGVGAKRAQDILDYRDSQGGFKTIDD-----LKNVSGIGEKTLEKL 171 >gi|331703165|ref|YP_004399852.1| alpha xylosidase or glucosidase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801720|emb|CBW53873.1| Alpha xylosidase or glucosidase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 756 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77 ++I +T +IG T + + QD + L+ F ++ ++ + LL Sbjct: 224 GFLINTSCKTTF---EIGSPTTDILSFKVDQDYLDLYLFSNNNLKELVSSYTLLTNRISK 280 Query: 78 VQGVGARVAMGVLSRITATELVESI 102 V +G V + L EL E+I Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305 >gi|327468947|gb|EGF14419.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK330] Length = 445 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179 A + + +LK + ++ + N + ++ L LGY + A Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPDKASYSGDLLESVVAGLEGLGYEYERTAEE 241 Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207 V+ + K K+ A + IIRLA L+++ Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQSLDS 273 >gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1] Length = 740 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|308270886|emb|CBX27496.1| Recombination protein recR [uncultured Desulfobacterium sp.] Length = 198 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 6/17 (35%), Positives = 10/17 (58%) Query: 107 SKVIAQIPGISMKIASR 123 K + ++PG+ K A R Sbjct: 11 IKNLTKLPGVGEKTAER 27 >gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985] gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985] Length = 690 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 23/126 (18%) Query: 69 RQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 R + +L S++ VG A + +R + V++I + + +A++ G+ IA+ ++ Sbjct: 526 RDLWRVLVALSIRHVGPTAARALATRFGS---VDAIFSADEQTLAEVDGVGPTIAASVI- 581 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL---------GYGQDQA 177 V S + + A M L L G+ ++ Sbjct: 582 --------EWFQVDWHRSILARWAAAGVKMAEEREELPQTLAGLTIVVTGSLEGFTRESV 633 Query: 178 TTAVVS 183 A+++ Sbjct: 634 QEAIIA 639 >gi|281492331|ref|YP_003354311.1| exodeoxyribonuclease V subunit alpha [Lactococcus lactis subsp. lactis KF147] gi|281375995|gb|ADA65486.1| Exodeoxyribonuclease V, alpha chain [Lactococcus lactis subsp. lactis KF147] Length = 834 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 6/14 (42%), Positives = 9/14 (64%) Query: 112 QIPGISMKIASRIM 125 + PGI K A +I+ Sbjct: 97 KFPGIGKKTAEKIV 110 >gi|256384164|gb|ACU78734.1| glycosyl hydrolase, family 31 [Mycoplasma mycoides subsp. capri str. GM12] gi|256384996|gb|ACU79565.1| glycosyl hydrolase, family 31 [Mycoplasma mycoides subsp. capri str. GM12] gi|296455936|gb|ADH22171.1| glycosyl hydrolase, family 31 [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 756 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77 ++I +T +IG T + + QD + L+ F ++ ++ + LL Sbjct: 224 GFLINTSCKTTF---EIGSPTTDILSFKVDQDYLDLYLFSNNNLKELVSSYTLLTNRISK 280 Query: 78 VQGVGARVAMGVLSRITATELVESI 102 V +G V + L EL E+I Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305 >gi|206901108|ref|YP_002251308.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12] gi|206740211|gb|ACI19269.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12] Length = 580 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%) Query: 70 QWFM--LLQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGISMKIA 121 + F L ++G+G + + +T EL I + + +IPGI K+A Sbjct: 46 KLFKQGKLYQIKGIGESIGQKIKEYLTTGKVTYLEELRREIPPE-ILELLKIPGIGPKLA 104 Query: 122 SRIMTEL 128 R+ TEL Sbjct: 105 YRLYTEL 111 >gi|160886051|ref|ZP_02067054.1| hypothetical protein BACOVA_04057 [Bacteroides ovatus ATCC 8483] gi|156108864|gb|EDO10609.1| hypothetical protein BACOVA_04057 [Bacteroides ovatus ATCC 8483] Length = 241 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A R++ L Sbjct: 53 FSKLPGIGRKTAMRLVLHL 71 >gi|167038709|ref|YP_001661694.1| recombination protein RecR [Thermoanaerobacter sp. X514] gi|256751421|ref|ZP_05492299.1| recombination protein RecR [Thermoanaerobacter ethanolicus CCSD1] gi|300913732|ref|ZP_07131049.1| recombination protein RecR [Thermoanaerobacter sp. X561] gi|307723252|ref|YP_003903003.1| recombination protein RecR [Thermoanaerobacter sp. X513] gi|229470345|sp|B0K101|RECR_THEPX RecName: Full=Recombination protein recR gi|166852949|gb|ABY91358.1| recombination protein RecR [Thermoanaerobacter sp. X514] gi|256749640|gb|EEU62666.1| recombination protein RecR [Thermoanaerobacter ethanolicus CCSD1] gi|300890417|gb|EFK85562.1| recombination protein RecR [Thermoanaerobacter sp. X561] gi|307580313|gb|ADN53712.1| recombination protein RecR [Thermoanaerobacter sp. X513] Length = 199 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 5/18 (27%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++++PG+ K A R+ Sbjct: 12 IEELSKLPGVGPKTAQRL 29 >gi|42560714|ref|NP_975165.1| alpha-xylosidase or alpha-glucosidase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492210|emb|CAE76807.1| alpha-xylosidase or alpha-glucosidase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320443|gb|ADK69086.1| glycosyl hydrolase, family 31 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 756 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQ----S 77 ++I +T +IG T + + QD + L+ F ++ ++ + LL Sbjct: 224 GFLINTSCKTTF---EIGSPTTDILSFKVDQDYLDLYLFSNNNLKELVSSYTLLTNRISK 280 Query: 78 VQGVGARVAMGVLSRITATELVESI 102 V +G V + L EL E+I Sbjct: 281 VPDIGYGVWLNRLYYHNYEELFEAI 305 >gi|332367345|gb|EGJ45080.1| endopeptidase O [Streptococcus sanguinis SK1059] Length = 689 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%) Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 AL LGY + ++ V L+ + +A +Q Sbjct: 226 EALKKLGYSEKESEKIVKEALEFDGELAKYAQ 257 >gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1] Length = 740 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1] gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2] Length = 740 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|313678923|ref|YP_004056662.1| php domain protein [Oceanithermus profundus DSM 14977] gi|313151638|gb|ADR35489.1| PHP domain protein [Oceanithermus profundus DSM 14977] Length = 535 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 35/126 (27%) Query: 74 LLQSVQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKI----------- 120 L VQG+G + A+ + ELV + + PG K Sbjct: 91 ELFMVQGLGPKRIRALWQAGIDSLEELVRAAEEGRVAAM---PGFGKKTQQALAEAARFA 147 Query: 121 --------------ASRIMT-ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 A+R++ +L+ A + + + + + ++ + A A+ Sbjct: 148 LANLRRVHLPVGLEAARLLLADLE--AAGIHAALAGSLRRRLETAGNVDLVARAAPEAVL 205 Query: 166 ALVNLG 171 A LG Sbjct: 206 A--ALG 209 >gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139] gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139] gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3] gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4] Length = 740 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|323341650|ref|ZP_08081883.1| DNA topoisomerase TopA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464075|gb|EFY09268.1| DNA topoisomerase TopA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 147 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 31/139 (22%) Query: 3 GKIKGNIEGLYEDYVLIDVQGVCYIIYCPI---------------RTLSCLGKIGDFCT- 46 G I G +E + + ++V Y + +L + I F Sbjct: 17 GFI-GRLEYKKKTEITVEVDSKSYHVSVEHDDTIQKILTRVGIQVSSLKEIPDINSFYEG 75 Query: 47 LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS-RITATELVESIILQ 105 + R+ I L + + L ++G+G R A +L RI + + Sbjct: 76 QVIHLESRKQCISL---NTSSAQD----LTQIKGIGPRKADAILKYRIEHEKFIS----- 123 Query: 106 NSKVIAQIPGISMKIASRI 124 + + I GI K+ RI Sbjct: 124 -VEELLNIKGIGPKLLDRI 141 >gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202] Length = 772 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 610 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 657 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 658 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 715 >gi|121603731|ref|YP_981060.1| phosphotransferase domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120592700|gb|ABM36139.1| PHP C-terminal domain protein [Polaromonas naphthalenivorans CJ2] Length = 575 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 L V G+G + + + L + + + I G K + + E Sbjct: 95 ELLKVPGLGPKRVRALYHDLGVQTLAQLHLAAQEGRVQAIAGFGPKT-QQALLE 147 >gi|332652776|ref|ZP_08418521.1| radical SAM domain protein [Ruminococcaceae bacterium D16] gi|332517922|gb|EGJ47525.1| radical SAM domain protein [Ruminococcaceae bacterium D16] Length = 423 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 7/45 (15%) Query: 83 ARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + + + + ++PGI +K A RI+ Sbjct: 311 PKCGWALRHLEHFPVE-----VNRADYETLLRVPGIGVKSARRIL 350 >gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1] gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1] gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2] gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2] gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1] gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1] gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1] gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2] gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1] gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2] gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1] gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1] gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4] gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3] gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1] gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1] gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2] gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1] gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1] gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1] gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1] gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2] gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1] gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2] gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3] gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2] gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1] gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3] gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1] gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1] gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2] gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1] gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2] gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2] gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3] gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1] gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2] gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1] gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2] gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1] gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3] gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2] gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1] gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1] gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2] gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1] Length = 740 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] Length = 696 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 11/99 (11%) Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK-----IASRI 124 + F L V+G G ++ + + + +I +++ I + GI K +A Sbjct: 517 RVFCAL-GVRGTGRSMSRRIARHFGSMD---AIRAADAEAIEAVEGIGPKKAPGVVAE-- 570 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 + EL L A + A Sbjct: 571 LVELADLIDKLVKAGVTMTEPGWTPPAEPGADAQADPEA 609 >gi|167579766|ref|ZP_02372640.1| TPR domain protein [Burkholderia thailandensis TXDOH] Length = 573 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 77 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPDSQRAAQVDAALLVLGGKPAEA 130 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 131 QPMLAQELARATGDNRGQAII--ALQAL 156 >gi|11499994|ref|NP_071240.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304] gi|2650671|gb|AAB91244.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304] Length = 208 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +L ++ G+G + A +L + ++ I + + ++ GI K A I Sbjct: 156 MLTAIPGIGEKKAEKLLDYFGS---IQRIANASIAELKRVDGIGEKKAREI 203 >gi|27469223|ref|NP_765860.1| recombination protein RecR [Staphylococcus epidermidis ATCC 12228] gi|57866112|ref|YP_187712.1| recombination protein RecR [Staphylococcus epidermidis RP62A] gi|242243367|ref|ZP_04797812.1| recombination protein RecR [Staphylococcus epidermidis W23144] gi|251811245|ref|ZP_04825718.1| recombination protein RecR [Staphylococcus epidermidis BCM-HMP0060] gi|282874601|ref|ZP_06283483.1| recombination protein RecR [Staphylococcus epidermidis SK135] gi|293367697|ref|ZP_06614349.1| recombination protein R [Staphylococcus epidermidis M23864:W2(grey)] gi|33301520|sp|Q8CMS3|RECR_STAES RecName: Full=Recombination protein recR gi|71152040|sp|Q5HRS7|RECR_STAEQ RecName: Full=Recombination protein recR gi|27316772|gb|AAO05947.1|AE016751_242 recombination protein [Staphylococcus epidermidis ATCC 12228] gi|57636770|gb|AAW53558.1| recombination protein RecR [Staphylococcus epidermidis RP62A] gi|242233316|gb|EES35628.1| recombination protein RecR [Staphylococcus epidermidis W23144] gi|251805206|gb|EES57863.1| recombination protein RecR [Staphylococcus epidermidis BCM-HMP0060] gi|281296525|gb|EFA89037.1| recombination protein RecR [Staphylococcus epidermidis SK135] gi|291318267|gb|EFE58661.1| recombination protein R [Staphylococcus epidermidis M23864:W2(grey)] gi|319399735|gb|EFV87983.1| recombination protein RecR [Staphylococcus epidermidis FRI909] gi|329727986|gb|EGG64433.1| recombination protein RecR [Staphylococcus epidermidis VCU144] gi|329734389|gb|EGG70703.1| recombination protein RecR [Staphylococcus epidermidis VCU028] gi|329736120|gb|EGG72393.1| recombination protein RecR [Staphylococcus epidermidis VCU045] Length = 198 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%) Query: 107 SKVIAQIPGISMKIASRIM---TELK-GKAISLSSVV 139 ++PGI K A R+ ++K + + + Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVKFAKAL 47 >gi|116512593|ref|YP_811500.1| ATP-dependent RecD/TraA family DNA helicase [Lactococcus lactis subsp. cremoris SK11] gi|116108247|gb|ABJ73387.1| ATP-dependent DNA helicase, RecD/TraA family [Lactococcus lactis subsp. cremoris SK11] Length = 833 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 6/14 (42%), Positives = 9/14 (64%) Query: 112 QIPGISMKIASRIM 125 + PGI K A +I+ Sbjct: 97 KFPGIGKKTAEKIV 110 >gi|325298171|ref|YP_004258088.1| Recombination protein recR [Bacteroides salanitronis DSM 18170] gi|324317724|gb|ADY35615.1| Recombination protein recR [Bacteroides salanitronis DSM 18170] Length = 206 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 16/29 (55%) Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTEL 128 +++ + A++PGI K A R++ L Sbjct: 7 SALLEKAVDEFAKLPGIGRKTAMRLVLYL 35 >gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2] Length = 740 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1] Length = 740 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1] gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3] Length = 740 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|281414408|ref|ZP_06246150.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] Length = 549 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 33/145 (22%) Query: 56 DQIRLFGFLSDLDRQ----WFMLL--QSVQGVGARVAMGVLSRI-TATELVESIILQNSK 108 + +RLF +L++ + L S++ VG A + + + T L + + Sbjct: 345 NTLRLF---DELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRAAAEAGDRD 401 Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINA--- 163 +A+I G+ I+ + +L +D V++ A +M + Sbjct: 402 RLAEIDGVGP-----IIAD------ALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPR 450 Query: 164 -ISALV-----NL-GYGQDQATTAV 181 + L +L G+ +D A A+ Sbjct: 451 TLEGLTVVVTGSLEGFSRDSAKEAI 475 >gi|281413115|ref|YP_003347194.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga naphthophila RKU-10] gi|281374218|gb|ADA67780.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga naphthophila RKU-10] Length = 181 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 20/127 (15%) Query: 73 MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 L S+ G+G A ++ R + + + + GI K +I + Sbjct: 55 EDLMSIPGIGPVKAQRIIDYRESHGGFSS------VEELKNVSGIGEKTLEKI-----SR 103 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 +++ V Q V K + S+ L L Y + A+V +K Sbjct: 104 YVTVEGVEQHIKREVTKLNVNTASVEE--------LETLPYIGEVKAKAIVEYREKNGPF 155 Query: 192 ADDSQII 198 ++ Sbjct: 156 RSPEDLL 162 >gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202] gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1] Length = 740 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 S++ VG A + + + VE+I + + +A + G+ I+ E ++ Sbjct: 578 LSIRHVGPTAARALATHFGS---VEAIREASVEELAGVDGVGE-----IIAE----SVKR 625 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINA-ISALVNL---------GYGQDQATTAVVS 183 V +++ A M A L L G+ +D+A A+VS Sbjct: 626 WFEVDWHQEIISRWAAAGVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVS 683 >gi|311745661|ref|ZP_07719446.1| recombination protein RecR [Algoriphagus sp. PR1] gi|126575099|gb|EAZ79449.1| recombination protein RecR [Algoriphagus sp. PR1] Length = 205 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 I+++PGI K A R+ L Sbjct: 12 VTEISRLPGIGKKTALRLALHL 33 >gi|83720331|ref|YP_441035.1| TPR domain-containing protein [Burkholderia thailandensis E264] gi|83654156|gb|ABC38219.1| TPR domain protein [Burkholderia thailandensis E264] Length = 606 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPDSQRAAQVDAALLVLGGKPAEA 163 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 164 QPMLAQELARATGDNRGQAII--ALQAL 189 >gi|78042767|ref|YP_361462.1| recombination protein RecR [Carboxydothermus hydrogenoformans Z-2901] gi|123575269|sp|Q3A8S2|RECR_CARHZ RecName: Full=Recombination protein recR gi|77994882|gb|ABB13781.1| recombination protein RecR [Carboxydothermus hydrogenoformans Z-2901] Length = 199 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 13/22 (59%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + +A++PGI K A ++ L Sbjct: 11 IEHLAKLPGIGPKTAQKLALYL 32 >gi|115522949|ref|YP_779860.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisA53] gi|115516896|gb|ABJ04880.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisA53] Length = 680 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 16/104 (15%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81 ++ P R L + D F+ +R + R F+ R+ LQ + G+ Sbjct: 577 LFMPGREAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 631 Query: 82 GARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 G +L T E+ + L + + ++PGIS + A RI Sbjct: 632 GPSRKRALLHHFGTLKEIERA-SLGD---LGKVPGISAESARRI 671 >gi|257140312|ref|ZP_05588574.1| TPR domain-containing protein [Burkholderia thailandensis E264] Length = 604 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 108 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPDSQRAAQVDAALLVLGGKPAEA 161 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 162 QPMLAQELARATGDNRGQAII--ALQAL 187 >gi|166711625|ref|ZP_02242832.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 357 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGIS 117 F L ++ G+G A +LS+ +I+ N K + + GI Sbjct: 115 FDALLALPGIGRSTAGAILSQAWNDPF--AIMDGNVKRVLTRFHGIG 159 >gi|161527945|ref|YP_001581771.1| ERCC4 domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160339246|gb|ABX12333.1| ERCC4 domain protein [Nitrosopumilus maritimus SCM1] Length = 228 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 SDL+RQ L S+ G+G + A+ +L + T ++ + + ++++ G+ A Sbjct: 149 SSDLERQQLSSLCSLPGIGEKFAIRMLEKFGTPLKVFTATTAE----LSKVEGLGDARAK 204 Query: 123 RI--MTELKGKAISLSS 137 +I + + K K + S+ Sbjct: 205 KIKKVLDTKSKHLKKSN 221 >gi|86741639|ref|YP_482039.1| serine/threonine protein kinase [Frankia sp. CcI3] gi|86568501|gb|ABD12310.1| serine/threonine protein kinase [Frankia sp. CcI3] Length = 1406 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%) Query: 113 IPGISMKIASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAI-SALVN 169 +PGI K ++ +L + SS ++ ++ +P A+ AL+ Sbjct: 821 LPGIGTKTRQQLRADL-DRLAGQVTSSPAERPTEPTLLDRVAAGLIPRATDRAVAEALLG 879 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 LG +Q A SV K + + + +R A Sbjct: 880 LG---EQGGNAWTSVRDAAKALDREQRTVRQA 908 >gi|58582767|ref|YP_201783.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624643|ref|YP_452015.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577554|ref|YP_001914483.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427361|gb|AAW76398.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368583|dbj|BAE69741.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522006|gb|ACD59951.1| A/G-specific adenine glycosylase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 357 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-IAQIPGIS 117 F L ++ G+G A +LS+ +I+ N K + + GI Sbjct: 115 FDALLALPGIGRSTAGAILSQAWNDPF--AIMDGNVKRVLTRFHGIG 159 >gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6] gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6] Length = 885 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 15/88 (17%) Query: 94 TATELVE--SIILQNSKVIAQIPGISMKIASRIMT-------------ELKGKAISLSSV 138 T +++E +++ + I +PG+ K A++I+ ELK K S Sbjct: 174 TPAQIIELKALMGDTADNIPGLPGVGPKTATKILLDYGTIENAHDHVEELKPKKAMESMR 233 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISA 166 D++ ++K+ A I + + A Sbjct: 234 DHWDLAVLSKQLATINTDSPVELELSEA 261 >gi|225710744|gb|ACO11218.1| Deoxyhypusine hydroxylase [Caligus rogercresseyi] Length = 304 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 29/139 (20%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 ++ F + +++G+G + A+ ++ L I +++ + L Sbjct: 18 KERFRAVFTLRGLGGKTALDIM-------LKT--IQEDTSEL-----------------L 51 Query: 129 KGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 K + + +Q + P A AL LG D ++ L Sbjct: 52 KHEIAYVMGQMQDPAAIEGLIDIPNGPKMEPIVRHEAAEALGALG-KDDNIRASLAKALA 110 Query: 187 KEKNIADDSQIIRLALRAI 205 ++ + + LALR + Sbjct: 111 SKELPVEVEETCSLALRKL 129 >gi|325479360|gb|EGC82456.1| helicase, RecD/TraA family [Anaerococcus prevotii ACS-065-V-Col13] Length = 719 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 F+ +++G+G + A + + + I+ N + ++ GI K I+ Sbjct: 81 FLSSGNLKGIGKKTAKAIYDKFGKESID--IVYNNPNQLLEVEGIGKKKLEDIIL 133 >gi|257484568|ref|ZP_05638609.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 166 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V GVG +L EL + I + IA+ PGIS K+A I Sbjct: 112 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDE----IAKAPGISKKLAESI 159 >gi|213422191|ref|ZP_03355257.1| UvrC excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 76 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 74 LLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L++++GVG + +L + L + + + IA++PGIS +A +I LK Sbjct: 23 TLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE----IAKVPGISQGLAEKIFWSLK 75 >gi|125624704|ref|YP_001033187.1| exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp. cremoris MG1363] gi|124493512|emb|CAL98491.1| exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071499|gb|ADJ60899.1| exodeoxyribonuclease V alpha chain [Lactococcus lactis subsp. cremoris NZ9000] Length = 833 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 6/14 (42%), Positives = 9/14 (64%) Query: 112 QIPGISMKIASRIM 125 + PGI K A +I+ Sbjct: 97 KFPGIGKKTAEKIV 110 >gi|294055445|ref|YP_003549103.1| helicase, RecD/TraA family [Coraliomargarita akajimensis DSM 45221] gi|293614778|gb|ADE54933.1| helicase, RecD/TraA family [Coraliomargarita akajimensis DSM 45221] Length = 773 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 V+G+G A ++ A L +I ++S + ++PGI A I Sbjct: 97 VKGIGRSYAKKIVDFFGADTLR--VISEDSGRLHEVPGIGKARAKSI 141 >gi|226355493|ref|YP_002785233.1| recombination protein RecR [Deinococcus deserti VCD115] gi|259563690|sp|C1D0V5|RECR_DEIDV RecName: Full=Recombination protein recR gi|226317483|gb|ACO45479.1| putative recombination protein RecR [Deinococcus deserti VCD115] Length = 198 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LV I ++++PGI K A R+ L Sbjct: 4 PPSLVSLIRE-----LSRLPGIGPKSAQRLAFHL 32 >gi|218288650|ref|ZP_03492927.1| competence protein ComEA helix-hairpin-helix repeat protein [Alicyclobacillus acidocaldarius LAA1] gi|218241307|gb|EED08482.1| competence protein ComEA helix-hairpin-helix repeat protein [Alicyclobacillus acidocaldarius LAA1] Length = 314 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 L+++ GVG + A +L+ A + + + + GI K Sbjct: 248 ETLETLPGVGPKRAAAILAYRQAHGPFR-----DLESLRHVKGIGEKT 290 >gi|330502979|ref|YP_004379848.1| recombination protein RecR [Pseudomonas mendocina NK-01] gi|328917265|gb|AEB58096.1| recombination protein RecR [Pseudomonas mendocina NK-01] Length = 199 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + +PG+ K A R+ +L + S + Q ++ + H S + + + Sbjct: 11 IDSLRILPGVGQKTAQRMALQLLERDRSGGQRLAQALNAAMEGVGHCKRCRSLSEDEV 68 >gi|290967950|ref|ZP_06559500.1| excinuclease ABC, C subunit [Megasphaera genomosp. type_1 str. 28L] gi|290782089|gb|EFD94667.1| excinuclease ABC, C subunit [Megasphaera genomosp. type_1 str. 28L] Length = 612 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 11/78 (14%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITA-TELVESIILQNSKVIAQIPGISMKIAS----- 122 R +L ++G+G + + E+ ++ + + +A +PG++ ++A Sbjct: 539 RALVSILDHIEGIGPKRRRALWQAFKNLEEMKQA----DVETLAAVPGMNRQVAENVYQF 594 Query: 123 -RIMTELKGKAISLSSVV 139 R+ T+ K K ++ V Sbjct: 595 FRLGTDEKRKLTGVAKSV 612 >gi|258511977|ref|YP_003185411.1| competence protein ComEA helix-hairpin-helix repeat-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478703|gb|ACV59022.1| competence protein ComEA helix-hairpin-helix repeat protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 301 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 L+++ GVG + A +L+ A + + + + GI K Sbjct: 235 ETLETLPGVGPKRAAAILAYRQAHGPFR-----DLESLRHVKGIGEKT 277 >gi|217966693|ref|YP_002352199.1| recombination protein RecR [Dictyoglomus turgidum DSM 6724] gi|217335792|gb|ACK41585.1| recombination protein RecR [Dictyoglomus turgidum DSM 6724] Length = 200 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 7/15 (46%), Positives = 11/15 (73%) Query: 110 IAQIPGISMKIASRI 124 + ++PGI K+A RI Sbjct: 14 LTKLPGIGPKLAQRI 28 >gi|15923470|ref|NP_371004.1| recombination protein RecR [Staphylococcus aureus subsp. aureus Mu50] gi|156978808|ref|YP_001441067.1| recombination protein RecR [Staphylococcus aureus subsp. aureus Mu3] gi|255005273|ref|ZP_05143874.2| recombination protein RecR [Staphylococcus aureus subsp. aureus Mu50-omega] gi|20139575|sp|Q932G3|RECR_STAAM RecName: Full=Recombination protein recR gi|166221970|sp|A7WYM0|RECR_STAA1 RecName: Full=Recombination protein recR gi|14246248|dbj|BAB56642.1| recombination protein [Staphylococcus aureus subsp. aureus Mu50] gi|156720943|dbj|BAF77360.1| recombination protein [Staphylococcus aureus subsp. aureus Mu3] Length = 198 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRIM---TELK 129 ++PGI K A R+ ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHTLDMK 36 >gi|120600544|ref|YP_965118.1| helix-hairpin-helix DNA-binding motif-containing protein [Shewanella sp. W3-18-1] gi|120560637|gb|ABM26564.1| helix-hairpin-helix motif [Shewanella sp. W3-18-1] Length = 175 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 24 VCYIIYCPIRT----LSCLGKIGDFCTLFV---ETHMRQDQIRLFGFLSDLDR--QWFML 74 + + I L L + L+ + + R++++ L G + Q F+ Sbjct: 64 IGTLCSISINFHIPILRSLSQTETAKILYFCASQLNRRENELTLTGRKPKRKKNQQLFI- 122 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQS+ V ++A +L +E+I + + ++ GI + A +I Sbjct: 123 LQSLPEVDPKLASRLLYHFKN---IEAIFTAPEEALIRVEGIGKEKARKI 169 >gi|297160410|gb|ADI10122.1| exodeoxyribonuclease V [Streptomyces bingchenggensis BCW-1] Length = 736 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++G+G A + L II + K + ++PG+ K +I Sbjct: 94 IKGIGPVFADRITEHFGLDTLQ--IIEEEPKRLIEVPGLGPKRTKKI 138 >gi|294628456|ref|ZP_06707016.1| 5'-3' exonuclease [Streptomyces sp. e14] gi|292831789|gb|EFF90138.1| 5'-3' exonuclease [Streptomyces sp. e14] Length = 306 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 21/113 (18%) Query: 101 SIILQNSK-VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159 +++ + + +PG+ K A++++ E A L++V ++ + + Sbjct: 192 ALLRGDPSDGLPGVPGVGEKTAAKLLAEFGDLAGILAAVDDPKAKLTPAQRKRLDEARPY 251 Query: 160 AINA-----ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 A ++A V L + TA+ + ALR ++ Sbjct: 252 LAVAPKVVRVAADVPL----PEVATALPRAPRDA-----------EALRELAA 289 >gi|282882711|ref|ZP_06291318.1| late competence protein [Peptoniphilus lacrimalis 315-B] gi|281297372|gb|EFA89861.1| late competence protein [Peptoniphilus lacrimalis 315-B] Length = 204 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Query: 103 ILQNSKVIAQIPGISMKIASRIMTELKGKA 132 ++ + +IPG+ K A +I+ + + K Sbjct: 149 ASKDE--LMKIPGVGPKTADKII-DYREKF 175 >gi|288942008|ref|YP_003444248.1| ADP-ribosylation/Crystallin J1 [Allochromatium vinosum DSM 180] gi|288897380|gb|ADC63216.1| ADP-ribosylation/Crystallin J1 [Allochromatium vinosum DSM 180] Length = 534 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Query: 164 ISA--LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 ++A LV LG+ A AV +V AD +R ALR + Sbjct: 140 VAARLLVELGFEPPLALAAVRAVRPGSVETADQEAYVR-ALRPL 182 >gi|317506737|ref|ZP_07964519.1| recombination protein RecR [Segniliparus rugosus ATCC BAA-974] gi|316254956|gb|EFV14244.1| recombination protein RecR [Segniliparus rugosus ATCC BAA-974] Length = 203 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 ++++PG+ K A RI L Sbjct: 13 LSRLPGVGPKSAQRIAFHL 31 >gi|312792794|ref|YP_004025717.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179934|gb|ADQ40104.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 405 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 245 EEDLERLDTIPGVGRRTAEHIIAE 268 >gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231] gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002] Length = 886 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 22/135 (16%) Query: 62 GFLSDL---DRQWFMLLQSVQGV-GARVAMGVLSRITATELVE------------SIILQ 105 GF + + DR F L+ + V + VL R T + E + + Sbjct: 130 GFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGLTPAQYPDFAALRG 189 Query: 106 NSK-VIAQIPGISMKIASRIMTE---LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 + + IPG+ K A++ + E L + + + V+ +E+ M Sbjct: 190 DPSDNLPNIPGVGPKTATKWIVEYGSL-DELLERADEVKGKAGTSLRERLEQVRMNRTLT 248 Query: 162 NAISALVNLGYGQDQ 176 I L L Y DQ Sbjct: 249 EMIKDLE-LPYSPDQ 262 >gi|317128232|ref|YP_004094514.1| helicase, RecD/TraA family [Bacillus cellulosilyticus DSM 2522] gi|315473180|gb|ADU29783.1| helicase, RecD/TraA family [Bacillus cellulosilyticus DSM 2522] Length = 763 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 6/14 (42%), Positives = 9/14 (64%) Query: 112 QIPGISMKIASRIM 125 + PGI K A +I+ Sbjct: 100 RFPGIGKKTAEKIV 113 >gi|116872913|ref|YP_849694.1| ComEA family DNA-binding competence protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741791|emb|CAK20915.1| DNA-binding competence protein 1, ComEA family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 201 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 150 LQQVPGIGDSKATAIIEYREKEGLYQTIED-----LKNVSGIGEKTVEKL 194 >gi|21282164|ref|NP_645252.1| recombination protein RecR [Staphylococcus aureus subsp. aureus MW2] gi|49485344|ref|YP_042565.1| recombination protein RecR [Staphylococcus aureus subsp. aureus MSSA476] gi|57651361|ref|YP_185410.1| recombination protein RecR [Staphylococcus aureus subsp. aureus COL] gi|82750187|ref|YP_415928.1| recombination protein RecR [Staphylococcus aureus RF122] gi|87159968|ref|YP_493166.1| recombination protein RecR [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194235|ref|YP_499027.1| recombination protein RecR [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220656|ref|YP_001331478.1| recombination protein RecR [Staphylococcus aureus subsp. aureus str. Newman] gi|161508725|ref|YP_001574384.1| recombination protein RecR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142545|ref|ZP_03567038.1| recombination protein RecR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253730828|ref|ZP_04864993.1| recombination protein RecR [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735212|ref|ZP_04869377.1| recombination protein RecR [Staphylococcus aureus subsp. aureus TCH130] gi|257424590|ref|ZP_05601019.1| recombination protein recR [Staphylococcus aureus subsp. aureus 55/2053] gi|257427256|ref|ZP_05603658.1| recombination protein recR [Staphylococcus aureus subsp. aureus 65-1322] gi|257429892|ref|ZP_05606279.1| recombination protein recR [Staphylococcus aureus subsp. aureus 68-397] gi|257432595|ref|ZP_05608958.1| recombination protein recR [Staphylococcus aureus subsp. aureus E1410] gi|257435500|ref|ZP_05611551.1| recombination protein RecR [Staphylococcus aureus subsp. aureus M876] gi|258424487|ref|ZP_05687364.1| recombination protein RecR [Staphylococcus aureus A9635] gi|258452486|ref|ZP_05700494.1| recombination protein recR [Staphylococcus aureus A5948] gi|262049734|ref|ZP_06022600.1| recombination protein RecR [Staphylococcus aureus D30] gi|262051992|ref|ZP_06024204.1| recombination protein RecR [Staphylococcus aureus 930918-3] gi|282912685|ref|ZP_06320481.1| recombination protein RecR [Staphylococcus aureus subsp. aureus WBG10049] gi|282913305|ref|ZP_06321097.1| recombination protein RecR [Staphylococcus aureus subsp. aureus M899] gi|282915796|ref|ZP_06323565.1| recombination protein RecR [Staphylococcus aureus subsp. aureus D139] gi|282918259|ref|ZP_06326000.1| recombination protein RecR [Staphylococcus aureus subsp. aureus C427] gi|282922933|ref|ZP_06330623.1| recombination protein RecR [Staphylococcus aureus subsp. aureus C101] gi|282924530|ref|ZP_06332200.1| recombination protein RecR [Staphylococcus aureus A9765] gi|283768196|ref|ZP_06341110.1| recombination protein recR [Staphylococcus aureus subsp. aureus H19] gi|284023489|ref|ZP_06377887.1| recombination protein RecR [Staphylococcus aureus subsp. aureus 132] gi|293498352|ref|ZP_06666206.1| recombination protein RecR [Staphylococcus aureus subsp. aureus 58-424] gi|293509293|ref|ZP_06668010.1| recombination protein RecR [Staphylococcus aureus subsp. aureus M809] gi|293550560|ref|ZP_06673232.1| recombination protein RecR [Staphylococcus aureus subsp. aureus M1015] gi|294850660|ref|ZP_06791383.1| recombination protein RecR [Staphylococcus aureus A9754] gi|297209023|ref|ZP_06925423.1| recombination protein R [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911026|ref|ZP_07128475.1| recombination protein R [Staphylococcus aureus subsp. aureus TCH70] gi|304380494|ref|ZP_07363172.1| recombination protein R [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|24212225|sp|Q8NY07|RECR_STAAW RecName: Full=Recombination protein recR gi|56749540|sp|Q6GC08|RECR_STAAS RecName: Full=Recombination protein recR gi|71152039|sp|Q5HIJ7|RECR_STAAC RecName: Full=Recombination protein recR gi|122540160|sp|Q2G0T3|RECR_STAA8 RecName: Full=Recombination protein recR gi|123487161|sp|Q2FJG2|RECR_STAA3 RecName: Full=Recombination protein recR gi|123548602|sp|Q2YVW5|RECR_STAAB RecName: Full=Recombination protein recR gi|172048764|sp|A6QED4|RECR_STAAE RecName: Full=Recombination protein recR gi|189029379|sp|A8Z0X4|RECR_STAAT RecName: Full=Recombination protein recR gi|21203600|dbj|BAB94300.1| recombination protein [Staphylococcus aureus subsp. aureus MW2] gi|49243787|emb|CAG42212.1| putative recombination protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285547|gb|AAW37641.1| recombination protein RecR [Staphylococcus aureus subsp. aureus COL] gi|82655718|emb|CAI80117.1| recombination protein [Staphylococcus aureus RF122] gi|87125942|gb|ABD20456.1| recombination protein RecR [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201793|gb|ABD29603.1| recombination protein RecR [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373456|dbj|BAF66716.1| recombination protein RecR [Staphylococcus aureus subsp. aureus str. Newman] gi|160367534|gb|ABX28505.1| recombination protein RecR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725440|gb|EES94169.1| recombination protein RecR [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726876|gb|EES95605.1| recombination protein RecR [Staphylococcus aureus subsp. aureus TCH130] gi|257273608|gb|EEV05710.1| recombination protein recR [Staphylococcus aureus subsp. aureus 55/2053] gi|257276887|gb|EEV08338.1| recombination protein recR [Staphylococcus aureus subsp. aureus 65-1322] gi|257280373|gb|EEV10960.1| recombination protein recR [Staphylococcus aureus subsp. aureus 68-397] gi|257283474|gb|EEV13606.1| recombination protein recR [Staphylococcus aureus subsp. aureus E1410] gi|257286096|gb|EEV16212.1| recombination protein RecR [Staphylococcus aureus subsp. aureus M876] gi|257845082|gb|EEV69119.1| recombination protein RecR [Staphylococcus aureus A9635] gi|257859886|gb|EEV82726.1| recombination protein recR [Staphylococcus aureus A5948] gi|259160121|gb|EEW45153.1| recombination protein RecR [Staphylococcus aureus 930918-3] gi|259162196|gb|EEW46772.1| recombination protein RecR [Staphylococcus aureus D30] gi|269940051|emb|CBI48427.1| putative recombination protein [Staphylococcus aureus subsp. aureus TW20] gi|282315154|gb|EFB45540.1| recombination protein RecR [Staphylococcus aureus subsp. aureus C101] gi|282317956|gb|EFB48324.1| recombination protein RecR [Staphylococcus aureus subsp. aureus C427] gi|282320334|gb|EFB50675.1| recombination protein RecR [Staphylococcus aureus subsp. aureus D139] gi|282323405|gb|EFB53724.1| recombination protein RecR [Staphylococcus aureus subsp. aureus M899] gi|282324381|gb|EFB54697.1| recombination protein RecR [Staphylococcus aureus subsp. aureus WBG10049] gi|282592839|gb|EFB97844.1| recombination protein RecR [Staphylococcus aureus A9765] gi|283461141|gb|EFC08226.1| recombination protein recR [Staphylococcus aureus subsp. aureus H19] gi|283469772|emb|CAQ48983.1| recombination protein RecR [Staphylococcus aureus subsp. aureus ST398] gi|290919607|gb|EFD96683.1| recombination protein RecR [Staphylococcus aureus subsp. aureus M1015] gi|291097283|gb|EFE27541.1| recombination protein RecR [Staphylococcus aureus subsp. aureus 58-424] gi|291467932|gb|EFF10441.1| recombination protein RecR [Staphylococcus aureus subsp. aureus M809] gi|294822497|gb|EFG38943.1| recombination protein RecR [Staphylococcus aureus A9754] gi|296886294|gb|EFH25227.1| recombination protein R [Staphylococcus aureus subsp. aureus ATCC 51811] gi|298693809|gb|ADI97031.1| recombination protein RecR [Staphylococcus aureus subsp. aureus ED133] gi|300887205|gb|EFK82401.1| recombination protein R [Staphylococcus aureus subsp. aureus TCH70] gi|302332193|gb|ADL22386.1| putative recombination protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302750370|gb|ADL64547.1| putative recombination protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341012|gb|EFM06934.1| recombination protein R [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436433|gb|ADQ75504.1| recombination protein R [Staphylococcus aureus subsp. aureus TCH60] gi|315196726|gb|EFU27072.1| recombination protein RecR [Staphylococcus aureus subsp. aureus CGS01] gi|320139231|gb|EFW31110.1| recombination protein RecR [Staphylococcus aureus subsp. aureus MRSA131] gi|320142045|gb|EFW33870.1| recombination protein RecR [Staphylococcus aureus subsp. aureus MRSA177] gi|323438497|gb|EGA96248.1| recombination protein RecR [Staphylococcus aureus O11] gi|323441333|gb|EGA98996.1| recombination protein RecR [Staphylococcus aureus O46] gi|329313198|gb|AEB87611.1| Recombination protein recR [Staphylococcus aureus subsp. aureus T0131] gi|329725116|gb|EGG61609.1| recombination protein RecR [Staphylococcus aureus subsp. aureus 21189] Length = 198 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRIM---TELK 129 ++PGI K A R+ ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHTLDMK 36 >gi|85716039|ref|ZP_01047016.1| excinuclease ABC subunit C [Nitrobacter sp. Nb-311A] gi|85697237|gb|EAQ35118.1| excinuclease ABC subunit C [Nitrobacter sp. Nb-311A] Length = 693 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G +L ++ I + + ++PGIS + A RI Sbjct: 638 LQEVPGIGPARKRALLHHFGT---IKEIERASVADLGKVPGISAESARRI 684 >gi|315303231|ref|ZP_07873880.1| ComE operon protein 1 [Listeria ivanovii FSL F6-596] gi|313628401|gb|EFR96885.1| ComE operon protein 1 [Listeria ivanovii FSL F6-596] Length = 202 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ+V G+G A ++ L ++I + + GI K ++ Sbjct: 151 LQTVPGIGESKATAIIEYREKEGLFQTIED-----LQNVTGIGEKTIEKL 195 >gi|297565571|ref|YP_003684543.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946] gi|296850020|gb|ADH63035.1| PHP domain protein [Meiothermus silvanus DSM 9946] Length = 532 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 19/122 (15%) Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI------ASR 123 + F V+G+G + + L E I + IPG K A+R Sbjct: 89 EMFR----VRGLGPKRIRALWDNH-VDSLEELIRHAEEGKLRGIPGFGAKTEQNLLEAAR 143 Query: 124 IMTE-LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-----LVNLGYGQDQA 177 E L+ + + Q + + + L+ L + +A Sbjct: 144 FALENLRRVLLPVGLGAAQLLLTDLAGAGIQAELTGSLRRGLETVGNVDLIAL--AEPEA 201 Query: 178 TT 179 Sbjct: 202 AA 203 >gi|168700666|ref|ZP_02732943.1| recombinant protein RecR [Gemmata obscuriglobus UQM 2246] Length = 201 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 6/15 (40%), Positives = 10/15 (66%) Query: 110 IAQIPGISMKIASRI 124 + ++PG+ K A RI Sbjct: 17 LTKLPGVGPKSAERI 31 >gi|156937851|ref|YP_001435647.1| ERCC4 domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566835|gb|ABU82240.1| ERCC4 domain protein [Ignicoccus hospitalis KIN4/I] Length = 246 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 Q F L+Q + GVG ++A +L R + V ++ + ++++ G+ A I+ Sbjct: 170 QLF-LVQCLPGVGPKLAEKLLERFGS---VRAVFNASVAELSKVEGLGTNKAQEIV 221 >gi|150021611|ref|YP_001306965.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermosipho melanesiensis BI429] gi|149794132|gb|ABR31580.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermosipho melanesiensis BI429] Length = 184 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 14/77 (18%) Query: 75 LQSVQGVGARV------------AMGVLSRIT-ATELVESIILQNSKVIAQIPGISMKIA 121 L +V G+G A + + + + ++ +I + + + ++PGI A Sbjct: 86 LLNVSGIGPSTLKKIKPFIKIKTANVITNSPSGSEDVKININNASVEELMKLPGIGKVKA 145 Query: 122 SRIMTELKGKAISLSSV 138 I+ E + K ++ S Sbjct: 146 QEII-EFRKKFGNVQSF 161 >gi|146307667|ref|YP_001188132.1| recombination protein RecR [Pseudomonas mendocina ymp] gi|166221955|sp|A4XVN4|RECR_PSEMY RecName: Full=Recombination protein recR gi|145575868|gb|ABP85400.1| recombination protein RecR [Pseudomonas mendocina ymp] Length = 199 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + +PG+ K A R+ +L + S + Q ++ + H S + + + Sbjct: 11 IDSLRILPGVGQKTAQRMALQLLERDRSGGQRLAQALNAAMEGVGHCKRCRSLSEDEV 68 >gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824] gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824] Length = 669 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 31/201 (15%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90 TLSC ++ V R+ + + GF Q F L +S+ + R+ L Sbjct: 428 NTLSCKPQM---VKSIVHFASRE-AMNIEGFSEKTAEQLFEKLNIKSISDL-YRITKEEL 482 Query: 91 SRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTELKG-----KAI 133 + A+ L+ +I + IP + K A+ + + K KA Sbjct: 483 MSLDKFKDKKASNLINAIEKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKKAS 542 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ-DQATTAVVSVLKKEKNIA 192 ++ QD+ + E +++ L LG + + V + + +A Sbjct: 543 YDELILVQDIGSIVAESIVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVA 602 Query: 193 DDS------QIIRLALRAISC 207 + I+ L ++ Sbjct: 603 TGTLQNYSRTAIKEKLESLGA 623 >gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium pseudotuberculosis I19] Length = 886 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 22/135 (16%) Query: 62 GFLSDL---DRQWFMLLQSVQGV-GARVAMGVLSRITATELVE------------SIILQ 105 GF + + DR F L+ + V + VL R T + E + + Sbjct: 130 GFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGLTPAQYPDFAALRG 189 Query: 106 NSK-VIAQIPGISMKIASRIMTE---LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 + + IPG+ K A++ + E L + + + V+ +E+ M Sbjct: 190 DPSDNLPNIPGVGPKTATKWIVEYGSL-DELLERADEVKGKAGTSLRERLEQVRMNRTLT 248 Query: 162 NAISALVNLGYGQDQ 176 I L L Y DQ Sbjct: 249 EMIKDLE-LPYSPDQ 262 >gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 667 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 25/181 (13%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90 TLSC ++ V + +D + + GF Q F L +S+ + ++ L Sbjct: 425 NTLSCKPQL---VKTIVH-YASRDAMNIAGFSEKTAEQLFEKLNIKSISDL-YKLKKEDL 479 Query: 91 SRIT------ATELVESIILQNSKVIAQ------IPGISMKIASRIMTELKG----KAIS 134 + A L+ ++ + IP + +K A I+ + K K + Sbjct: 480 INLEKFGDKKAENLLNAVEGSKECKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT 539 Query: 135 LSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD-QATTAVVSVLKKEKNIA 192 +V QD+ + + I+ I L++LG V S+ K + +A Sbjct: 540 FEELVSVQDVGDIVAKDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVA 599 Query: 193 D 193 Sbjct: 600 T 600 >gi|256825143|ref|YP_003149103.1| Excinuclease ABC subunit C [Kytococcus sedentarius DSM 20547] gi|256688536|gb|ACV06338.1| Excinuclease ABC subunit C [Kytococcus sedentarius DSM 20547] Length = 651 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 L +V G+G +L V +I + +A +PGI +A Sbjct: 582 ELDTVPGLGPARRRALLEAFGT---VRAIRAATPEELAAVPGIGPGLA 626 >gi|254446646|ref|ZP_05060122.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235] gi|198260954|gb|EDY85262.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235] Length = 549 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK--IGDFCTLFVETHMRQDQIRLFG 62 +KG I + ++ V++D+ G P + S LG+ IG+ +F+E ++ L Sbjct: 19 VKGTITEIRQNEVVVDIGGKS-EGLVPGQEFSDLGELQIGEEIEVFLEKLEDKEGNPLLS 77 Query: 63 FLSDLDRQ 70 F ++ Sbjct: 78 FDKAEQKK 85 >gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] Length = 669 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 ++ VG R A + + + + +++ + IP I KIA I+ + + + Sbjct: 514 LGIRHVGERAAKILARHFGSMSALMAATVED---LTVIPEIGPKIAESIV-DYFARPENK 569 Query: 136 SSVVQQDMSCVNKEQAHICSMPSFAINAISALV---NL-GYGQDQATTAVVSV 184 + + + D + VN E+A+ + P A V L G+ + +A A+ + Sbjct: 570 TLIQRLDRAGVNMEEANQQAEPGQQPLAGKTFVITGTLEGFSRQEAQRAIEEL 622 >gi|312794524|ref|YP_004027447.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312794549|ref|YP_004027472.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181664|gb|ADQ41834.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181689|gb|ADQ41859.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 405 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 245 EEDLERLDTIPGVGRRTAEHIIAE 268 >gi|312794480|ref|YP_004027403.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181620|gb|ADQ41790.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 405 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 245 EEDLERLDTIPGVGRRTAEHIIAE 268 >gi|312794023|ref|YP_004026946.1| transposase is116/is110/is902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181163|gb|ADQ41333.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 405 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 245 EEDLERLDTIPGVGRRTAEHIIAE 268 >gi|242372723|ref|ZP_04818297.1| recombination protein RecR [Staphylococcus epidermidis M23864:W1] gi|242349640|gb|EES41241.1| recombination protein RecR [Staphylococcus epidermidis M23864:W1] Length = 198 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRIM---TELK 129 ++PGI K A R+ ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHTLDMK 36 >gi|195566235|ref|XP_002106692.1| GD17033 [Drosophila simulans] gi|194204078|gb|EDX17654.1| GD17033 [Drosophila simulans] Length = 213 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 + M +R ++ + N K + +IPGI K A Sbjct: 138 PKAWMANNTRC----FLDLLNNGNVKQLQEIPGIGPKSA 172 >gi|304440575|ref|ZP_07400461.1| recombination protein R [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370951|gb|EFM24571.1| recombination protein R [Peptoniphilus duerdenii ATCC BAA-1640] Length = 196 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Query: 110 IAQIPGISMKIASRI---MTELKGKAISLSSVVQQDMSCVNKEQ 150 + ++PG+ K A RI + E + K + + N E+ Sbjct: 12 LTKLPGVGDKSAERILYYILE-QDKEEARGLAKAIVDAAENIEE 54 >gi|295100614|emb|CBK98159.1| helicase, putative, RecD/TraA family [Faecalibacterium prausnitzii L2-6] Length = 739 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F+ +S+ +GAR A ++ + A L +I + + IPGIS A RI E K Sbjct: 86 FLASRSLPYIGARTADKIIDKFGAAALE--VIANDPAQLTLIPGISADKADRIQQEFK 141 >gi|162148589|ref|YP_001603050.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|161787166|emb|CAP56758.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] Length = 728 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++G+G A ++ E V +I Q + ++ GI K A RI+ Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPHRLREVTGIGPKRAERIV 145 >gi|78184972|ref|YP_377407.1| recombination protein RecR [Synechococcus sp. CC9902] gi|123581335|sp|Q3AX77|RECR_SYNS9 RecName: Full=Recombination protein recR gi|78169266|gb|ABB26363.1| DNA replication and repair protein RecR [Synechococcus sp. CC9902] Length = 192 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 6/22 (27%), Positives = 10/22 (45%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 ++PGI + A R+ L Sbjct: 5 IDQFQRLPGIGPRTAQRLALHL 26 >gi|194337622|ref|YP_002019416.1| hypothetical protein Ppha_2639 [Pelodictyon phaeoclathratiforme BU-1] gi|194310099|gb|ACF44799.1| conserved hypothetical protein [Pelodictyon phaeoclathratiforme BU-1] Length = 417 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 23/112 (20%) Query: 24 VCYIIYCPIRTLSCLGKIGDFCTLFVE-THMRQDQIRLFGFLSDLDR---------QWFM 73 V Y Y P+ + L + L + +R +GF S + + F Sbjct: 250 VYYSAYVPVSDDNRLPVLAAPPLLREHRLYQADWLLRFYGF-SAEEILSDEAPNLDESFD 308 Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A + I + + ++PGI + A RI+ Sbjct: 309 ---------PKTAWALRH---PEFFPIEINRADYGTLLRVPGIGVVSARRII 348 >gi|296393612|ref|YP_003658496.1| recombination protein RecR [Segniliparus rotundus DSM 44985] gi|296180759|gb|ADG97665.1| recombination protein RecR [Segniliparus rotundus DSM 44985] Length = 212 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 ++++PG+ K A RI L Sbjct: 13 LSRLPGVGPKGAQRIAFHL 31 >gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018] Length = 669 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 31/201 (15%) Query: 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL--QSVQGVGARVAMGVL 90 TLSC ++ V R+ + + GF Q F L +S+ + R+ L Sbjct: 428 NTLSCKPQM---VKSIVHFASRE-AMNIEGFSEKTAEQLFEKLNIKSISDL-YRITKEEL 482 Query: 91 SRIT------ATELVESIILQ---NSKVIA---QIPGISMKIASRIMTELKG-----KAI 133 + A+ L+ +I + IP + K A+ + + K KA Sbjct: 483 MSLDKFKDKKASNLINAIEKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKKAS 542 Query: 134 SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ-DQATTAVVSVLKKEKNIA 192 ++ QD+ + E +++ L LG + + V + + +A Sbjct: 543 YDELILVQDIGSIVAESIVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVA 602 Query: 193 DDS------QIIRLALRAISC 207 + I+ L ++ Sbjct: 603 TGTLQNYSRTAIKEKLESLGA 623 >gi|307327194|ref|ZP_07606382.1| PHP domain protein [Streptomyces violaceusniger Tu 4113] gi|306887085|gb|EFN18083.1| PHP domain protein [Streptomyces violaceusniger Tu 4113] Length = 581 Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 19/98 (19%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 L ++ +G + AM + L + +L ++I + + G K I+ Sbjct: 92 RELTAIPALGPKKAMILYEELEISSVDQLAQAIEEH---QLRDLKGFGPKSEENIL---- 144 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167 + ++ + A + ++AL Sbjct: 145 ---------HGIALMRAAGDRIPLDEAMDVADDIVAAL 173 >gi|255532916|ref|YP_003093288.1| recombination protein RecR [Pedobacter heparinus DSM 2366] gi|255345900|gb|ACU05226.1| recombination protein RecR [Pedobacter heparinus DSM 2366] Length = 205 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 13/25 (52%) Query: 107 SKVIAQIPGISMKIASRIMTELKGK 131 +++PG+ K A R++ L K Sbjct: 12 VNEFSKLPGVGQKTALRLVLHLLNK 36 >gi|167848580|ref|ZP_02474088.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei B7210] Length = 707 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|15926157|ref|NP_373690.1| recombination protein RecR [Staphylococcus aureus subsp. aureus N315] gi|148266938|ref|YP_001245881.1| recombination protein RecR [Staphylococcus aureus subsp. aureus JH9] gi|150392984|ref|YP_001315659.1| recombination protein RecR [Staphylococcus aureus subsp. aureus JH1] gi|253315724|ref|ZP_04838937.1| recombination protein RecR [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257795399|ref|ZP_05644378.1| recombination protein RecR [Staphylococcus aureus A9781] gi|258413425|ref|ZP_05681700.1| recombination protein RecR [Staphylococcus aureus A9763] gi|258421453|ref|ZP_05684380.1| recombination protein RecR [Staphylococcus aureus A9719] gi|258436848|ref|ZP_05689188.1| recombination protein recR [Staphylococcus aureus A9299] gi|258444433|ref|ZP_05692767.1| recombination protein recR [Staphylococcus aureus A8115] gi|258445645|ref|ZP_05693825.1| recombination protein recR [Staphylococcus aureus A6300] gi|258448177|ref|ZP_05696306.1| recombination protein recR [Staphylococcus aureus A6224] gi|258456011|ref|ZP_05703966.1| recombination protein recR [Staphylococcus aureus A5937] gi|269202099|ref|YP_003281368.1| recombination protein RecR [Staphylococcus aureus subsp. aureus ED98] gi|282893619|ref|ZP_06301852.1| recombination protein RecR [Staphylococcus aureus A8117] gi|282927513|ref|ZP_06335131.1| recombination protein RecR [Staphylococcus aureus A10102] gi|295405728|ref|ZP_06815538.1| recombination protein RecR [Staphylococcus aureus A8819] gi|296276915|ref|ZP_06859422.1| recombination protein RecR [Staphylococcus aureus subsp. aureus MR1] gi|297245637|ref|ZP_06929505.1| recombination protein RecR [Staphylococcus aureus A8796] gi|20139661|sp|Q99WC3|RECR_STAAN RecName: Full=Recombination protein recR gi|189029377|sp|A6TYV4|RECR_STAA2 RecName: Full=Recombination protein recR gi|189029378|sp|A5IQ32|RECR_STAA9 RecName: Full=Recombination protein recR gi|13700370|dbj|BAB41668.1| recombination protein [Staphylococcus aureus subsp. aureus N315] gi|147740007|gb|ABQ48305.1| DNA replication and repair protein RecR [Staphylococcus aureus subsp. aureus JH9] gi|149945436|gb|ABR51372.1| recombination protein RecR [Staphylococcus aureus subsp. aureus JH1] gi|257789371|gb|EEV27711.1| recombination protein RecR [Staphylococcus aureus A9781] gi|257839672|gb|EEV64141.1| recombination protein RecR [Staphylococcus aureus A9763] gi|257842877|gb|EEV67299.1| recombination protein RecR [Staphylococcus aureus A9719] gi|257848639|gb|EEV72626.1| recombination protein recR [Staphylococcus aureus A9299] gi|257850692|gb|EEV74640.1| recombination protein recR [Staphylococcus aureus A8115] gi|257855595|gb|EEV78530.1| recombination protein recR [Staphylococcus aureus A6300] gi|257858692|gb|EEV81566.1| recombination protein recR [Staphylococcus aureus A6224] gi|257862223|gb|EEV84996.1| recombination protein recR [Staphylococcus aureus A5937] gi|262074389|gb|ACY10362.1| recombination protein RecR [Staphylococcus aureus subsp. aureus ED98] gi|282590837|gb|EFB95913.1| recombination protein RecR [Staphylococcus aureus A10102] gi|282764305|gb|EFC04432.1| recombination protein RecR [Staphylococcus aureus A8117] gi|285816179|gb|ADC36666.1| Recombination protein RecR [Staphylococcus aureus 04-02981] gi|294969803|gb|EFG45822.1| recombination protein RecR [Staphylococcus aureus A8819] gi|297177623|gb|EFH36874.1| recombination protein RecR [Staphylococcus aureus A8796] gi|312828975|emb|CBX33817.1| recombination protein RecR [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130110|gb|EFT86099.1| recombination protein RecR [Staphylococcus aureus subsp. aureus CGS03] gi|329725651|gb|EGG62130.1| recombination protein RecR [Staphylococcus aureus subsp. aureus 21172] gi|329730673|gb|EGG67054.1| recombination protein RecR [Staphylococcus aureus subsp. aureus 21193] Length = 198 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRIM---TELK 129 ++PGI K A R+ ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHTLDMK 36 >gi|312878731|ref|ZP_07738543.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311794492|gb|EFR11009.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 211 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 51 EEDLERLDTIPGVGRRTAEHIIAE 74 >gi|258545553|ref|ZP_05705787.1| recombination protein RecR [Cardiobacterium hominis ATCC 15826] gi|258519253|gb|EEV88112.1| recombination protein RecR [Cardiobacterium hominis ATCC 15826] Length = 201 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + + +PG+ K A R+ L Sbjct: 11 VQALTCLPGVGNKTAQRMALRL 32 >gi|257389025|ref|YP_003178798.1| PHP domain protein [Halomicrobium mukohataei DSM 12286] gi|257171332|gb|ACV49091.1| PHP domain protein [Halomicrobium mukohataei DSM 12286] Length = 577 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 + SV+GVG + A + L T +L + + I + G K + + + Sbjct: 95 ITSVEGVGPKTAGTLYEELGIETLDDLESAAEAGD---IQTVKGFGAKT-EQNILD 146 >gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] Length = 940 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 113 IPGISMKIASRIMTE------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN---A 163 +PGI K A++++ + L +A + +++M ++E A + Sbjct: 213 VPGIGPKTAAQLLEDYGSLDALLDRADEIKQKKRREMLIAHREDALLSRQLVTLDRHVPV 272 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 A +LG A+V L+ E + IR A Sbjct: 273 EEAPEDLGLSPFD-HAALVRFLEDEMEFNTLPKRIREA 309 >gi|329119770|ref|ZP_08248447.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200] gi|327464115|gb|EGF10423.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200] Length = 647 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + GVG + +L+R V + ++ +AQ+ GIS +A +I Sbjct: 596 LSDIPGVGGKRRQALLTRFGGLRGVTAASKED---LAQVEGISKALAEKI 642 >gi|239941328|ref|ZP_04693265.1| putative exodeoxyribonuclease V [Streptomyces roseosporus NRRL 15998] gi|239987790|ref|ZP_04708454.1| putative exodeoxyribonuclease V [Streptomyces roseosporus NRRL 11379] gi|291444769|ref|ZP_06584159.1| deoxyribonuclease [Streptomyces roseosporus NRRL 15998] gi|291347716|gb|EFE74620.1| deoxyribonuclease [Streptomyces roseosporus NRRL 15998] Length = 741 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G +A + + L +I Q K + ++PG+ K Sbjct: 94 IKGIGPVMADRITTHFGVDTLD--VIEQEPKRLVEVPGLGPK 133 >gi|70727531|ref|YP_254447.1| recombination protein RecR [Staphylococcus haemolyticus JCSC1435] gi|123659170|sp|Q4L3D6|RECR_STAHJ RecName: Full=Recombination protein recR gi|68448257|dbj|BAE05841.1| recombination protein [Staphylococcus haemolyticus JCSC1435] Length = 198 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRIM---TELK 129 ++PGI K A R+ ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHTLDMK 36 >gi|90422420|ref|YP_530790.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisB18] gi|119367825|sp|Q21AW5|UVRC_RHOPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|90104434|gb|ABD86471.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisB18] Length = 699 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 16/104 (15%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81 ++ P R L + D F+ +R + R F+ R+ LQ + G+ Sbjct: 596 LFMPDRLPIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 650 Query: 82 GARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 G +L T E+ + L + + ++PGIS + A RI Sbjct: 651 GPSRKRALLHHFGTLKEIERA-SLGD---LGKVPGISAESAKRI 690 >gi|228474164|ref|ZP_04058901.1| recombination protein RecR [Staphylococcus hominis SK119] gi|228271859|gb|EEK13196.1| recombination protein RecR [Staphylococcus hominis SK119] Length = 198 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%) Query: 107 SKVIAQIPGISMKIASRIM---TELK-GKAISLSSVV 139 ++PGI K A R+ ++K + + + Sbjct: 11 IDSFMKLPGIGPKTAQRLAFYTLDMKEDDVVKFAKAL 47 >gi|116072458|ref|ZP_01469725.1| RecR protein [Synechococcus sp. BL107] gi|116064980|gb|EAU70739.1| RecR protein [Synechococcus sp. BL107] Length = 192 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 6/22 (27%), Positives = 10/22 (45%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 ++PGI + A R+ L Sbjct: 5 IDQFQRLPGIGPRTAQRLALHL 26 >gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 931 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 V GVG + A + + E +I +N K + PG+ K A + Sbjct: 264 GVPGVGPKTAAQIFAEFPTLE---AI-QENEKALK--PGVQKKFAGQ 304 >gi|330953815|gb|EGH54075.1| recombination protein RecR [Pseudomonas syringae Cit 7] Length = 200 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 +PG+ K A R+ +L + S S + Q + H S + Sbjct: 17 LPGVGQKTAQRMALQLLERDRSGGSRLAQALGQAMDGVGHCRSCRTLTEE 66 >gi|330899494|gb|EGH30913.1| recombination protein RecR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 200 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 +PG+ K A R+ +L + S S + Q + H S + Sbjct: 17 LPGVGQKTAQRMALQLLERDRSGGSRLAQALGQAMDGVGHCRSCRTLTEE 66 >gi|223043449|ref|ZP_03613495.1| recombination protein RecR [Staphylococcus capitis SK14] gi|314935110|ref|ZP_07842469.1| recombination protein RecR [Staphylococcus caprae C87] gi|222443238|gb|EEE49337.1| recombination protein RecR [Staphylococcus capitis SK14] gi|313653040|gb|EFS16803.1| recombination protein RecR [Staphylococcus caprae C87] Length = 198 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRIM---TELK 129 ++PGI K A R+ ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHTLDMK 36 >gi|167617842|ref|ZP_02386473.1| TPR domain protein [Burkholderia thailandensis Bt4] Length = 396 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPDSQRAAQVDAALLVLGGKPAEA 163 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 164 QPMLAQELARATGDNRGQAII--ALQAL 189 >gi|314935125|ref|ZP_07842478.1| recombination protein RecR [Staphylococcus hominis subsp. hominis C80] gi|313656460|gb|EFS20199.1| recombination protein RecR [Staphylococcus hominis subsp. hominis C80] Length = 198 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%) Query: 107 SKVIAQIPGISMKIASRIM---TELK-GKAISLSSVV 139 ++PGI K A R+ ++K + + + Sbjct: 11 IDSFMKLPGIGPKTAQRLAFYTLDMKEDDVVKFAKAL 47 >gi|312136909|ref|YP_004004246.1| dead/deah box helicase domain protein [Methanothermus fervidus DSM 2088] gi|311224628|gb|ADP77484.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM 2088] Length = 668 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V+G+G R A + + I + K + ++ GI K+AS I Sbjct: 614 DILHLVVRVKGLGRRRARKIFNMFGDD-----IASVSEKELQKVEGIGPKLASAI 663 >gi|222152176|ref|YP_002561336.1| recombination protein RecR [Macrococcus caseolyticus JCSC5402] gi|254790774|sp|B9E8X2|RECR_MACCJ RecName: Full=Recombination protein recR gi|222121305|dbj|BAH18640.1| recombination protein RecR [Macrococcus caseolyticus JCSC5402] Length = 198 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRI---MTELK 129 ++PGI K ASR+ + ++K Sbjct: 11 IDSFMKLPGIGPKTASRLAFHVLDMK 36 >gi|330684677|gb|EGG96379.1| recombination protein RecR [Staphylococcus epidermidis VCU121] Length = 198 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%) Query: 107 SKVIAQIPGISMKIASRIM---TELK 129 ++PGI K A R+ ++K Sbjct: 11 IDSFMKLPGIGPKTAQRLAFHTLDMK 36 >gi|319948952|ref|ZP_08023057.1| excinuclease ABC subunit C [Dietzia cinnamea P4] gi|319437390|gb|EFV92405.1| excinuclease ABC subunit C [Dietzia cinnamea P4] Length = 709 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 4/95 (4%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R +L V G+G ++ + + + +++ + +PGI +A+ I+ L Sbjct: 603 RMTASVLDDVPGLGPARRAALVEKFPTVSALRAASVED---LCTVPGIGPGVAASILATL 659 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 G S + + + + Sbjct: 660 -GSGGSADTGPGDATGSAGESATDTDPGDADGTDV 693 >gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331] Length = 698 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 13/105 (12%) Query: 70 QWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + F L V+G G ++ + + + + + + + Q+ GI + A+ ++ EL Sbjct: 515 RVFCAL-GVRGTGRSMSRRIARHFASMDRIAAA----DVEALQQVDGIGKEKAAAVVREL 569 Query: 129 K------GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167 + GK ++ + V + + +A S L Sbjct: 570 QELAPLIGKLVA-AGVNMTEPGATPPPEPGAAQEGEAEESATSGL 613 >gi|159040904|ref|YP_001540156.1| DEAD/DEAH box helicase domain-containing protein [Caldivirga maquilingensis IC-167] gi|226740604|sp|A8MB76|HELS_CALMQ RecName: Full=Putative ski2-type helicase gi|157919739|gb|ABW01166.1| DEAD/DEAH box helicase domain protein [Caldivirga maquilingensis IC-167] Length = 756 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 70 QWFMLLQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIM 125 + L+ +++GVG A + + + +L ++ N + +I GI KIA I+ Sbjct: 667 ELLELVVNLEGVGRVRARALYAAGYRSIEDLAKA----NVSDLTRIRGIGDKIAGSII 720 >gi|145300090|ref|YP_001142931.1| DNA polymerase IV [Aeromonas salmonicida subsp. salmonicida A449] gi|142852862|gb|ABO91183.1| DNA polymerase IV [Aeromonas salmonicida subsp. salmonicida A449] Length = 361 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 7/15 (46%), Positives = 11/15 (73%) Query: 110 IAQIPGISMKIASRI 124 +A++PGI K A R+ Sbjct: 189 LAKLPGIGRKTAERL 203 >gi|66046625|ref|YP_236466.1| recombination protein RecR [Pseudomonas syringae pv. syringae B728a] gi|302188651|ref|ZP_07265324.1| recombination protein RecR [Pseudomonas syringae pv. syringae 642] gi|75501355|sp|Q4ZQZ4|RECR_PSEU2 RecName: Full=Recombination protein recR gi|63257332|gb|AAY38428.1| RecR protein [Pseudomonas syringae pv. syringae B728a] gi|330972503|gb|EGH72569.1| recombination protein RecR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 200 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 +PG+ K A R+ +L + S S + Q + H S + Sbjct: 17 LPGVGQKTAQRMALQLLERDRSGGSRLAQALGQAMDGVGHCRSCRTLTEE 66 >gi|288919113|ref|ZP_06413452.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f] gi|288349457|gb|EFC83695.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f] Length = 715 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 27/182 (14%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD------------ 66 +D+ G+ Y + + IGD + + L GF S Sbjct: 479 LDIDGLGYETATVLLAEGRIRDIGD-----IFHLAPESFEGLRGFASKKVDQILRGIEAA 533 Query: 67 LDRQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 DR + LL S++ VG A + + + + +I ++ +A + G+ KIA + Sbjct: 534 RDRPLWRLLVGLSIRHVGPTAARALARELRSLD---AIAAAPAERLAAVDGVGPKIAEAV 590 Query: 125 M---TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 + + + + + + + L G+ +D AT AV Sbjct: 591 VDWFADPRHRDVVARIAAGGARLADEGAGEGPGLLDGVVVVITGTLQ--GWSRDTATEAV 648 Query: 182 VS 183 + Sbjct: 649 QA 650 >gi|238544546|dbj|BAH60898.1| putative excinuclease ABC subunit C [Desulfotignum balticum] Length = 588 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Query: 78 VQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125 + GVG + +L + L + + + + +PGI+ K+A +I+ Sbjct: 536 IPGVGPKRKKLLLQQFKGLENLKAASVDE----LTSLPGITEKLAEQIL 580 >gi|24641330|ref|NP_511125.2| no distributive disjunction [Drosophila melanogaster] gi|128497|sp|P18105|NOD_DROME RecName: Full=Kinesin-like protein Nod gi|157780|gb|AAA28653.1| kinesin-like protein (nod) [Drosophila melanogaster] gi|157974|gb|AAC14452.1| kinesin-like protein [Drosophila melanogaster] gi|15150427|gb|AAK84937.1| SD02282p [Drosophila melanogaster] gi|22833096|gb|AAF48064.2| no distributive disjunction [Drosophila melanogaster] Length = 666 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 + M ++ ++ + N K + +IPGI K A Sbjct: 591 PKAWMANNTKC----FLDLLNNGNVKQLQEIPGIGPKSA 625 >gi|113474139|ref|YP_720200.1| RNA-directed DNA polymerase [Trichodesmium erythraeum IMS101] gi|110165187|gb|ABG49727.1| RNA-directed DNA polymerase [Trichodesmium erythraeum IMS101] Length = 634 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 13/68 (19%) Query: 117 SMKIA-----------SRI-MTE-LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 K A R+ + E LK + + S + + +E+ +P+ A Sbjct: 97 GKKTAGIDGIKSLPPMQRLNLVEMLKSQYLKASPTRRVWIPKPGREEKRPLGIPTMYDRA 156 Query: 164 ISALVNLG 171 + ALV LG Sbjct: 157 LQALVKLG 164 >gi|313123458|ref|YP_004033717.1| ATP-dependent DNA helicase, recd/traa family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280021|gb|ADQ60740.1| ATP-dependent DNA helicase, RecD/TraA family [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 796 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Query: 107 SKVIA--QIPGISMKIASRIM 125 K ++ + PGI K A +I+ Sbjct: 87 VKYLSSDKFPGIGPKTAEKIV 107 >gi|167838923|ref|ZP_02465700.1| PHP domain N-terminal region family protein [Burkholderia thailandensis MSMB43] Length = 616 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALHVETLEQLKGAAENGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPCVSEAVAA 188 >gi|104782578|ref|YP_609076.1| hypothetical protein PSEEN3550 [Pseudomonas entomophila L48] gi|95111565|emb|CAK16285.1| Hypothetical protein; putative leucine-rich repeat domain protein [Pseudomonas entomophila L48] Length = 1517 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Query: 68 DRQ------WFMLLQSVQGVGARVAMGVLSRITATELVESIIL 104 +R+ F L +V GVG + A+ + A +L E++I Sbjct: 832 EREVEAPGGLFQALIAVLGVGGKQALELSGAAPAEQLREAVIA 874 >gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51] gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51] Length = 392 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%) Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 + +SL S D AH S+ +AI L LG+ QDQA A + K E+ Sbjct: 314 DQFLSLLSESGGDDDAPLPPGAHQISVTEEERDAIERLTRLGFTQDQAIQAYFACDKNEE 373 Query: 190 NIAD 193 A+ Sbjct: 374 LAAN 377 >gi|116513849|ref|YP_812755.1| exonuclease V subunit alpha [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093164|gb|ABJ58317.1| ATP-dependent DNA helicase, RecD/TraA family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 796 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Query: 107 SKVIA--QIPGISMKIASRIM 125 K ++ + PGI K A +I+ Sbjct: 87 VKYLSSEKFPGIGPKTAEKIV 107 >gi|330992004|ref|ZP_08315953.1| hypothetical protein SXCC_01910 [Gluconacetobacter sp. SXCC-1] gi|329761025|gb|EGG77520.1| hypothetical protein SXCC_01910 [Gluconacetobacter sp. SXCC-1] Length = 451 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 ++G+G A ++ E V +I Q + ++ GI K A RI+ Sbjct: 97 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERIV 142 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMKIASRI 124 R+ + L S GVG A+ + + +I +N +A+ I GI K A +I Sbjct: 152 REIMLFLHS-NGVGTSRAVRIFKTYGQDAVK--LISENPYRLAKDIRGIGFKTADQI 205 >gi|325684368|gb|EGD26537.1| exodeoxyribonuclease V alpha subunit [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 796 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Query: 107 SKVIA--QIPGISMKIASRIM 125 K ++ + PGI K A +I+ Sbjct: 87 VKYLSSDKFPGIGPKTAEKIV 107 >gi|300933816|ref|ZP_07149072.1| recombination protein RecR [Corynebacterium resistens DSM 45100] Length = 218 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A RI L Sbjct: 13 FSRLPGIGPKSAQRIALHL 31 >gi|269793189|ref|YP_003318093.1| methyl-accepting chemotaxis sensory transducer [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100824|gb|ACZ19811.1| methyl-accepting chemotaxis sensory transducer [Thermanaerovibrio acidaminovorans DSM 6589] Length = 433 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 33/75 (44%) Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 S+++ ++ + + I + +S L + + ++ A SV ++ + + Sbjct: 343 MESVAATSEEQAAASQEIAKSIDEAARSTVEVVSGLGVIQHSAEETAKAAESVAREAEKL 402 Query: 192 ADDSQIIRLALRAIS 206 ++ ++ AL++ S Sbjct: 403 TSGAEALKEALKSFS 417 >gi|126456341|ref|YP_001074654.1| helix-hairpin-helix DNA-binding motif-containing protein [Burkholderia pseudomallei 1106a] gi|242312600|ref|ZP_04811617.1| hypothetical protein BURPS1106B_1379 [Burkholderia pseudomallei 1106b] gi|126230109|gb|ABN93522.1| hypothetical protein BURPS1106A_A0618 [Burkholderia pseudomallei 1106a] gi|242135839|gb|EES22242.1| hypothetical protein BURPS1106B_1379 [Burkholderia pseudomallei 1106b] Length = 740 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|325125506|gb|ADY84836.1| exodeoxyribonuclease V alpha chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 796 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Query: 107 SKVIA--QIPGISMKIASRIM 125 K ++ + PGI K A +I+ Sbjct: 87 VKYLSSEKFPGIGPKTAEKIV 107 >gi|300311698|ref|YP_003775790.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1] gi|300074483|gb|ADJ63882.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1] Length = 593 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 12/97 (12%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQW---FMLLQSVQGVGARVAMGV-- 89 L IG V + + L L L R + F L ++ G+G + + Sbjct: 55 FPKLPGIGQDLEEKVREIIATGRCLL---LEALRRNFPPHFNDLLAIPGLGPKRVQRLNH 111 Query: 90 -LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 L + +L E+ I + IPG K I+ Sbjct: 112 ALGISSIKQLREAAIAGKVRD---IPGFGPKTEQSIL 145 >gi|296139879|ref|YP_003647122.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Tsukamurella paurometabola DSM 20162] gi|296028013|gb|ADG78783.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Tsukamurella paurometabola DSM 20162] Length = 320 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 101 SIILQNSK-VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159 +++ + + +PGI K AS+++ + G ++ Q S + A S Sbjct: 205 ALLRGDPSDGLPGVPGIGEKTASKLLLQ-YGSLAAIRDAAAQQPSPLPARAAASIVNSSD 263 Query: 160 AINA 163 ++A Sbjct: 264 YLDA 267 >gi|289596778|ref|YP_003483474.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|289534565|gb|ADD08912.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] Length = 756 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASR 123 S +RQ ++ ++S+ V A+++ +L + +++ + + Q+ GI K A Sbjct: 686 STEERQRYI-IESLPNVSAKLSQRLLEHFGSVKDVINA----EVGELIQVKGIGRKTAEE 740 Query: 124 I 124 I Sbjct: 741 I 741 >gi|322417835|ref|YP_004197058.1| PHP domain-containing protein [Geobacter sp. M18] gi|320124222|gb|ADW11782.1| PHP domain protein [Geobacter sp. M18] Length = 576 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 29/147 (19%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ-----WFMLLQSVQGVGA 83 + L + +G +E +++ + + + +Q F L SV +G Sbjct: 46 QMSHKELLEIPGVGADLAARIEEYLQTGTMAYY----EQLKQEVPAGVF-ALLSVPDLGP 100 Query: 84 RVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 + A + L + EL ++ + + I GI K I LKG Sbjct: 101 KTAKAIYEALQVTSLEELEKAALEH---RLIGIKGIKEKTEENI---LKG---------- 144 Query: 141 QDMSCVNKEQAHICSMPSFAINAISAL 167 +E+ + M A + AL Sbjct: 145 IQAVKRGRERQPLGRMLPAAEELVEAL 171 >gi|104773842|ref|YP_618822.1| exodeoxyribonuclease V alpha chain [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422923|emb|CAI97585.1| Exodeoxyribonuclease V alpha chain [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 796 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Query: 107 SKVIA--QIPGISMKIASRIM 125 K ++ + PGI K A +I+ Sbjct: 87 VKYLSSEKFPGIGPKTAEKIV 107 >gi|68537105|ref|YP_251810.1| recombination protein RecR [Corynebacterium jeikeium K411] gi|260579450|ref|ZP_05847331.1| recombination protein RecR [Corynebacterium jeikeium ATCC 43734] gi|123650055|sp|Q4JSL5|RECR_CORJK RecName: Full=Recombination protein recR gi|68264704|emb|CAI38192.1| recombination protein [Corynebacterium jeikeium K411] gi|258602420|gb|EEW15716.1| recombination protein RecR [Corynebacterium jeikeium ATCC 43734] Length = 250 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 110 IAQIPGISMKIASRIMTEL 128 +++PGI K A RI L Sbjct: 13 FSRLPGIGPKSAQRIALHL 31 >gi|300811360|ref|ZP_07091857.1| helicase, RecD/TraA family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497724|gb|EFK32749.1| helicase, RecD/TraA family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 796 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Query: 107 SKVIA--QIPGISMKIASRIM 125 K ++ + PGI K A +I+ Sbjct: 87 VKYLSSEKFPGIGPKTAEKIV 107 >gi|317052105|ref|YP_004113221.1| Zinc finger C4-type protein RecR [Desulfurispirillum indicum S5] gi|316947189|gb|ADU66665.1| Zinc finger C4-type, RecR [Desulfurispirillum indicum S5] Length = 208 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 11/18 (61%) Query: 110 IAQIPGISMKIASRIMTE 127 +AQIPGI K A R E Sbjct: 14 LAQIPGIGQKTAERFALE 31 >gi|312878615|ref|ZP_07738472.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311794606|gb|EFR11078.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 276 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 116 EEDLERLDTIPGVGRRTAEHIIAE 139 >gi|306836196|ref|ZP_07469180.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] gi|304567917|gb|EFM43498.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] Length = 986 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 16/37 (43%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 Y++Y P L+ L + ++ + ++ L+ Sbjct: 451 GYLVYIPQNFLNQLSSQPEQVNEYIVPAIEKNNQELY 487 >gi|256370923|ref|YP_003108747.1| recombination protein RecR [Acidimicrobium ferrooxidans DSM 10331] gi|256007507|gb|ACU53074.1| recombination protein RecR [Acidimicrobium ferrooxidans DSM 10331] Length = 205 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + + ++PGI K A RI L Sbjct: 12 IEELGRLPGIGPKSAQRIALAL 33 >gi|312878670|ref|ZP_07738509.1| transposase IS111A/IS1328/IS1533 [Caldicellulosiruptor lactoaceticus 6A] gi|311794553|gb|EFR11043.1| transposase IS111A/IS1328/IS1533 [Caldicellulosiruptor lactoaceticus 6A] Length = 277 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 245 EEDMERLDTIPGVGRRTAEHIIAE 268 >gi|157816803|gb|ABV82393.1| RE24179p [Drosophila melanogaster] gi|254750759|gb|ACT80132.1| RE24835p [Drosophila melanogaster] Length = 153 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 + M ++ L+ + N K + +IPGI K A Sbjct: 78 PKAWMANNTKC----LLGHLNNGNVKQLQEIPGIGSKTA 112 >gi|220931411|ref|YP_002508319.1| DNA polymerase X family protein [Halothermothrix orenii H 168] gi|219992721|gb|ACL69324.1| DNA polymerase X family protein [Halothermothrix orenii H 168] Length = 573 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 10/69 (14%) Query: 73 MLLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 + + + G+G + A + + + EL ++ ++ ++ G +K LK Sbjct: 94 LEIIKIPGLGPKRAYQLFNELGVTNLEELKSALNTGKAR---KLKGFGVKTEE----NLK 146 Query: 130 GKAISLSSV 138 K S Sbjct: 147 NKIEKYESF 155 >gi|254478007|ref|ZP_05091391.1| Transposase IS116/IS110/IS902 family protein [Carboxydibrachium pacificum DSM 12653] gi|214036011|gb|EEB76701.1| Transposase IS116/IS110/IS902 family protein [Carboxydibrachium pacificum DSM 12653] Length = 327 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 167 EEDLERLDTIPGVGRRTAEHIIAE 190 >gi|282865905|ref|ZP_06274954.1| helicase, RecD/TraA family [Streptomyces sp. ACTE] gi|282559229|gb|EFB64782.1| helicase, RecD/TraA family [Streptomyces sp. ACTE] Length = 751 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G +A + + L II Q+ K + ++PG+ K Sbjct: 102 IKGIGPVMADRITTHFGVDTLD--IIEQHPKRLVEVPGLGPK 141 >gi|332975720|gb|EGK12604.1| competence protein ComEA [Desmospora sp. 8437] Length = 204 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ + G+G A ++ S+ + ++PGI K ++ Sbjct: 151 EELQQLSGIGPSKAEAIIRHREENGPFTSVDQ-----LTEVPGIGEKTLDQL 197 >gi|254884038|ref|ZP_05256748.1| recombination protein recR [Bacteroides sp. 4_3_47FAA] gi|254836831|gb|EET17140.1| recombination protein recR [Bacteroides sp. 4_3_47FAA] Length = 206 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 A++PG+ K A R++ L Sbjct: 18 FAKLPGVGRKTAMRLVLHL 36 >gi|300361475|ref|ZP_07057652.1| exodeoxyribonuclease V alpha subunit [Lactobacillus gasseri JV-V03] gi|300354094|gb|EFJ69965.1| exodeoxyribonuclease V alpha subunit [Lactobacillus gasseri JV-V03] Length = 792 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 107 SKVIA--QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 +K ++ + PGI K A RI+ L A+ L ++ ++ Q S+ S Sbjct: 89 AKYLSSDKFPGIGKKAAERIIDSLGTNALDLIKANPTEIDDLDLTQKQKDSLLSGINQ 146 >gi|150005488|ref|YP_001300232.1| recombination protein RecR [Bacteroides vulgatus ATCC 8482] gi|237710673|ref|ZP_04541154.1| recombination protein recR [Bacteroides sp. 9_1_42FAA] gi|237727063|ref|ZP_04557544.1| recombination protein recR [Bacteroides sp. D4] gi|265750346|ref|ZP_06086409.1| recombination protein RecR [Bacteroides sp. 3_1_33FAA] gi|294778690|ref|ZP_06744109.1| recombination protein RecR [Bacteroides vulgatus PC510] gi|319640712|ref|ZP_07995426.1| recombination protein recR [Bacteroides sp. 3_1_40A] gi|166221923|sp|A6L4J6|RECR_BACV8 RecName: Full=Recombination protein recR gi|149933912|gb|ABR40610.1| recombination protein recR [Bacteroides vulgatus ATCC 8482] gi|229433919|gb|EEO43996.1| recombination protein recR [Bacteroides dorei 5_1_36/D4] gi|229455395|gb|EEO61116.1| recombination protein recR [Bacteroides sp. 9_1_42FAA] gi|263237242|gb|EEZ22692.1| recombination protein RecR [Bacteroides sp. 3_1_33FAA] gi|294447346|gb|EFG15927.1| recombination protein RecR [Bacteroides vulgatus PC510] gi|317387674|gb|EFV68539.1| recombination protein recR [Bacteroides sp. 3_1_40A] Length = 205 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 A++PG+ K A R++ L Sbjct: 17 FAKLPGVGRKTAMRLVLHL 35 >gi|104780941|ref|YP_607439.1| recombination protein RecR [Pseudomonas entomophila L48] gi|122403933|sp|Q1ICI0|RECR_PSEE4 RecName: Full=Recombination protein recR gi|95109928|emb|CAK14633.1| recombination protein recR [Pseudomonas entomophila L48] Length = 200 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152 + +PG+ K A R+ +L + S + + Q +S + H Sbjct: 11 IDALRILPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMEGVGH 56 >gi|37650594|emb|CAD69018.1| ComEA protein [Bacillus megaterium] Length = 214 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+G A ++S L +++ + Q+ GI K +I Sbjct: 162 ELQTLNGIGPSKASAIVSYREENGLFQTVED-----LGQVSGIGEKSLEKI 207 >gi|323704752|ref|ZP_08116329.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535678|gb|EGB25452.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 419 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 10/55 (18%) Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 GF + F+ L SV G+G +A G++S E+ N +A+ GI Sbjct: 279 GFKNQ-----FLCLTSVNGIGPTIAAGLIS-----EIGGISRFDNDNALAKFSGI 323 >gi|304316180|ref|YP_003851325.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777682|gb|ADL68241.1| transposase IS116/IS110/IS902 family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 419 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 10/55 (18%) Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 GF + F+ L SV G+G +A G++S E+ N +A+ GI Sbjct: 279 GFKNQ-----FLCLTSVNGIGPTIAAGLIS-----EIGGISRFDNDNALAKFSGI 323 >gi|325981779|ref|YP_004294181.1| DNA-directed DNA polymerase [Nitrosomonas sp. AL212] gi|325531298|gb|ADZ26019.1| DNA-directed DNA polymerase [Nitrosomonas sp. AL212] Length = 384 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVA--MGVLSRITATELVES 101 D + + G R W + + + G+G + A + +L T EL + Sbjct: 180 DGLTIIGMSDIPQRIWPLSVHKINGIGPKAANKLALLGITTIAELARA 227 >gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b] gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b] Length = 664 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L + VG + A + R E +++II + + I GI K+A I+ Sbjct: 500 ERVLFALGIRL--VGQKAASLIAERF---ETMDAIIAATVEELTSIDGIGTKMAESIVL 553 >gi|167578728|ref|ZP_02371602.1| PHP domain N-terminal region family protein [Burkholderia thailandensis TXDOH] Length = 614 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + + +L E+ + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALRVETLEQLKEAAEKGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|167574903|ref|ZP_02367777.1| PHP domain N-terminal region family protein [Burkholderia oklahomensis C6786] Length = 680 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 16/103 (15%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L E+ + + PG K A I Sbjct: 159 ELLGVPGLGAKRVRALHDALHVETLEQLKEAAESGKIRGL---PGFGEKTEAHIAEAIGA 215 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 L+ K+ +S + + + ALV Sbjct: 216 RLRRKSQRF------LLSFATQYLTPLLTYLRETPGVSEALVA 252 >gi|220928256|ref|YP_002505165.1| excinuclease ABC subunit C [Clostridium cellulolyticum H10] gi|254764928|sp|B8I8F2|UVRC_CLOCE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|219998584|gb|ACL75185.1| excinuclease ABC, C subunit [Clostridium cellulolyticum H10] Length = 613 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 12/99 (12%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y + + L + +I D + +L R L ++G+G Sbjct: 522 YELATNMPLLRFITEIQDE----THRVAVEYNRKL-----REKRYVRSELDEIEGIGQTR 572 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 ++ + V +I + + ++ GIS KIA I Sbjct: 573 KKALIKHFKS---VAAIRKADIAQLQEVNGISEKIAKNI 608 >gi|83716502|ref|YP_440157.1| phosphotransferase domain-containing protein [Burkholderia thailandensis E264] gi|167616864|ref|ZP_02385495.1| PHP domain N-terminal region family protein [Burkholderia thailandensis Bt4] gi|257140786|ref|ZP_05589048.1| phosphotransferase domain-containing protein [Burkholderia thailandensis E264] gi|83650327|gb|ABC34391.1| PHP domain N-terminal region family [Burkholderia thailandensis E264] Length = 614 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + + +L E+ + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALRVETLEQLKEAAEKGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|226196621|ref|ZP_03792202.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei Pakistan 9] gi|225931497|gb|EEH27503.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei Pakistan 9] Length = 646 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|217424656|ref|ZP_03456154.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 576] gi|217392580|gb|EEC32604.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 576] Length = 640 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|53721489|ref|YP_110474.1| phosphoesterase [Burkholderia pseudomallei K96243] gi|52211903|emb|CAH37908.1| putative phosphoesterase [Burkholderia pseudomallei K96243] Length = 646 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|27382581|ref|NP_774110.1| excinuclease ABC subunit C [Bradyrhizobium japonicum USDA 110] gi|81734657|sp|Q89DG9|UVRC_BRAJA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|27355753|dbj|BAC52735.1| excinuclease ABC chain C [Bradyrhizobium japonicum USDA 110] Length = 686 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81 ++ P R L + D F+ +R + R F+ R+ LQ + G+ Sbjct: 583 LFMPEREAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 637 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 G +L L E I + + ++PG+S + A RI Sbjct: 638 GPSRKRALLHHFGT--LKE-IERASIADLGKVPGVSAESARRI 677 >gi|114562713|ref|YP_750226.1| recombination protein RecR [Shewanella frigidimarina NCIMB 400] gi|122300117|sp|Q084C7|RECR_SHEFN RecName: Full=Recombination protein recR gi|114334006|gb|ABI71388.1| recombination protein RecR [Shewanella frigidimarina NCIMB 400] Length = 199 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 8/70 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL++ + +PG+ K A R+ +L + + + + E H Sbjct: 7 VDELIQ--------SLRALPGVGPKSAQRMAFQLLERERKVGLKLADSLQKAMSEVGHCQ 58 Query: 155 SMPSFAINAI 164 S +F + Sbjct: 59 SCRTFTEQDL 68 >gi|254187261|ref|ZP_04893775.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei Pasteur 52237] gi|157934943|gb|EDO90613.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei Pasteur 52237] Length = 654 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|76817244|ref|YP_337156.1| DNA polymerase X family/PHP domain-containing protein [Burkholderia pseudomallei 1710b] gi|254262450|ref|ZP_04953315.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 1710a] gi|76581717|gb|ABA51191.1| DNA polymerase X family/PHP domain protein [Burkholderia pseudomallei 1710b] gi|254213452|gb|EET02837.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 1710a] Length = 650 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|254185379|ref|ZP_04891967.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 1655] gi|184209614|gb|EDU06657.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 1655] Length = 650 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|315127276|ref|YP_004069279.1| competence protein [Pseudoalteromonas sp. SM9913] gi|315015790|gb|ADT69128.1| competence protein [Pseudoalteromonas sp. SM9913] Length = 97 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 13/24 (54%) Query: 102 IILQNSKVIAQIPGISMKIASRIM 125 I + K + ++PG+ K A I+ Sbjct: 39 INTADLKQLIKLPGVGKKKAQAII 62 >gi|295706662|ref|YP_003599737.1| ComE operon protein [Bacillus megaterium DSM 319] gi|294804321|gb|ADF41387.1| ComE operon protein [Bacillus megaterium DSM 319] Length = 211 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+G A ++S L +++ + Q+ GI K +I Sbjct: 159 ELQTLNGIGPSKASAIVSYREENGLFQTVED-----LGQVSGIGEKSLEKI 204 >gi|86738985|ref|YP_479385.1| recombination protein RecR [Frankia sp. CcI3] gi|123751565|sp|Q2JGD6|RECR_FRASC RecName: Full=Recombination protein recR gi|86565847|gb|ABD09656.1| DNA replication and repair protein RecR [Frankia sp. CcI3] Length = 199 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128 I+ + ++PGI K A RI L Sbjct: 5 IVQDLIDELGRLPGIGPKSAQRIAFHL 31 >gi|212212866|ref|YP_002303802.1| recombination protein RecR [Coxiella burnetii CbuG_Q212] gi|212011276|gb|ACJ18657.1| recombination protein [Coxiella burnetii CbuG_Q212] Length = 201 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 18/56 (32%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 + + +PGI K A R+ L K+ + D Q C + Sbjct: 10 IEALQCLPGIGPKSAQRMAFHLLAKSGQAKGLALSDALQSAIRQVGECKLCQIYTE 65 >gi|260886383|ref|ZP_05897646.1| competence protein [Selenomonas sputigena ATCC 35185] gi|330838849|ref|YP_004413429.1| competence protein ComEA helix-hairpin-helix repeat protein [Selenomonas sputigena ATCC 35185] gi|260863904|gb|EEX78404.1| competence protein [Selenomonas sputigena ATCC 35185] gi|329746613|gb|AEB99969.1| competence protein ComEA helix-hairpin-helix repeat protein [Selenomonas sputigena ATCC 35185] Length = 198 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIM 125 +V I + K + ++PGI +A RI+ Sbjct: 134 PEGMVN-INTADEKELDKLPGIGPAMAKRII 163 >gi|320010734|gb|ADW05584.1| helicase, RecD/TraA family [Streptomyces flavogriseus ATCC 33331] Length = 743 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G +A + + L II Q+ K + ++PG+ K Sbjct: 94 IKGIGPVMADRITTHFGVDTLD--IIEQHPKRLVEVPGLGPK 133 >gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239] gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239] Length = 662 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 62/216 (28%) Query: 3 GKIKGNIEGLYEDYVLIDVQ------GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 ++G + + E V GV IYC TL C ++ V R+ Sbjct: 392 ESLEGT-KEIEEPKVCPACGAHLVHEGV--HIYC-ENTLGCKPQM---VKTIVHFAGRE- 443 Query: 57 QIRLFGFLSDLDRQWFMLL----------------QSVQGVGARVAMGVLSRITATELVE 100 + + GF Q F L + G + A +L Sbjct: 444 AMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEKLLDLDKFGPKKAQNLLD--------- 494 Query: 101 SIILQNSKVIAQ------IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 +I + IP + +K A +L + SL ++ + Q Sbjct: 495 AIEKSKDCTLEAFLYSLGIPNVGVKTAK----DLVKRFESLENLENATFEELVSVQDVGD 550 Query: 155 SMPSFAIN---------AISALVNLG----YGQDQA 177 + I I+ L++LG Y + + Sbjct: 551 IVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV 586 >gi|254198905|ref|ZP_04905323.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei S13] gi|169657077|gb|EDS88471.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei S13] Length = 648 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|167905529|ref|ZP_02492734.1| DNA polymerase X family/PHP domain protein [Burkholderia pseudomallei NCTC 13177] Length = 658 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|147678282|ref|YP_001212497.1| DNA polymerase IV, histidinol phosphatase and related hydrolases [Pelotomaculum thermopropionicum SI] gi|146274379|dbj|BAF60128.1| DNA polymerase IV, histidinol phosphatase and related hydrolases [Pelotomaculum thermopropionicum SI] Length = 567 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 24/115 (20%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI--------- 120 + + S+ G+G + A + L + EL + + + PG+ K Sbjct: 91 LEIMSLPGIGPKRAGLIYRKLGVASLEELARAAREGRVRSL---PGMGSKTESDIIRNIE 147 Query: 121 -----ASRIMT----ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 A R++ EL G+ ++ I+ + A Sbjct: 148 MREDRAGRVLLATARELAGELAGFLKILPGVSRVEAGGSLRRWQETVGDIDLVVA 202 >gi|254296742|ref|ZP_04964196.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 406e] gi|157806601|gb|EDO83771.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 406e] Length = 640 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|126444286|ref|YP_001061709.1| DNA polymerase X family protein [Burkholderia pseudomallei 668] gi|126223777|gb|ABN87282.1| DNA polymerase X family protein [Burkholderia pseudomallei 668] Length = 642 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17] gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17] Length = 921 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 14/50 (28%) Query: 80 GVGARVAMGVLSRITATEL--VESIILQNSKVIAQIPGISMKIASRIMTE 127 GVG + +L V +++ + + +PG+ K AS+++ E Sbjct: 170 GVGPK------------QLGDVLALMGDSVDNVPGVPGVGPKTASKLIVE 207 >gi|289643262|ref|ZP_06475387.1| recombination protein RecR [Frankia symbiont of Datisca glomerata] gi|289506902|gb|EFD27876.1| recombination protein RecR [Frankia symbiont of Datisca glomerata] Length = 200 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128 I+ + ++PGI K A RI L Sbjct: 7 IVQDLIDELGRLPGIGPKSAQRIAFHL 33 >gi|224373470|ref|YP_002607842.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola AmH] gi|223589333|gb|ACM93069.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola AmH] Length = 546 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 38/159 (23%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFM-----LLQSVQGVGARVAMGV 89 L+ L IG + +++ + + F + Q + L S++G+G + + Sbjct: 55 LTKLPGIGHDLSEYIKEIVNTGK-----FHKLEELQKEIPKGVVELLSIEGLGPKRVKQL 109 Query: 90 LSRI---TATELVESIILQNSKVIAQIPGISMKIASRIM--------------------- 125 +L + + ++PG K+ +I+ Sbjct: 110 YETFGIKNMDDLKKYAYSGE---LDKLPGFGPKLIEKILKGVKQLKKAGIRFLWAEVEDT 166 Query: 126 -TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA 163 ELK + V D++ + + + A Sbjct: 167 ANELKDYLLEFEGVETVDIAGSFRRKKESVGDLDILVIA 205 >gi|167741515|ref|ZP_02414289.1| phosphoesterase [Burkholderia pseudomallei 14] Length = 646 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|167623526|ref|YP_001673820.1| recombination protein RecR [Shewanella halifaxensis HAW-EB4] gi|189029374|sp|B0TP04|RECR_SHEHH RecName: Full=Recombination protein recR gi|167353548|gb|ABZ76161.1| recombination protein RecR [Shewanella halifaxensis HAW-EB4] Length = 199 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 EL++ + +PG+ K A R+ +L + + + ++ + H Sbjct: 7 VDELIQ--------SLRCLPGVGPKSAQRMAFQLLERDRKAGAKLADSLAKAMSDVGHCQ 58 Query: 155 SMPSFAIN 162 S +F Sbjct: 59 SCRTFTEE 66 >gi|111220097|ref|YP_710891.1| recombination protein RecR [Frankia alni ACN14a] gi|122954652|sp|Q0RT19|RECR_FRAAA RecName: Full=Recombination protein recR gi|111147629|emb|CAJ59284.1| recombination and repair protein [Frankia alni ACN14a] Length = 199 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTEL 128 I+ + ++PGI K A RI L Sbjct: 5 IVQDLIDELGRLPGIGPKSAQRIAFHL 31 >gi|76799924|ref|ZP_00781928.1| competence protein CelA [Streptococcus agalactiae 18RS21] gi|76584724|gb|EAO61478.1| competence protein CelA [Streptococcus agalactiae 18RS21] Length = 94 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ GVGA+ A +L + ++I + + GI K ++ Sbjct: 43 LQTISGVGAKRAQDILDYRDSQGGFKTIDD-----LKNVSGIGEKTLEKL 87 >gi|237507761|ref|ZP_04520476.1| DNA polymerase X family protein [Burkholderia pseudomallei MSHR346] gi|234999966|gb|EEP49390.1| DNA polymerase X family protein [Burkholderia pseudomallei MSHR346] Length = 638 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + + +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|167913839|ref|ZP_02500930.1| DNA polymerase X family/PHP domain protein [Burkholderia pseudomallei 112] Length = 650 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + + +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|167897154|ref|ZP_02484556.1| DNA polymerase X family protein [Burkholderia pseudomallei 7894] gi|167921751|ref|ZP_02508842.1| DNA polymerase X family protein [Burkholderia pseudomallei BCC215] Length = 642 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + + +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|167818707|ref|ZP_02450387.1| phosphoesterase [Burkholderia pseudomallei 91] Length = 648 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + + +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|134282990|ref|ZP_01769692.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 305] gi|134245638|gb|EBA45730.1| helix-hairpin-helix motif domain/PHP domain protein [Burkholderia pseudomallei 305] Length = 640 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGVLSRITA---TELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + + +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|120598525|ref|YP_963099.1| recombination protein RecR [Shewanella sp. W3-18-1] gi|146293396|ref|YP_001183820.1| recombination protein RecR [Shewanella putrefaciens CN-32] gi|166221965|sp|A4Y7T8|RECR_SHEPC RecName: Full=Recombination protein recR gi|166221967|sp|A1RIQ0|RECR_SHESW RecName: Full=Recombination protein recR gi|120558618|gb|ABM24545.1| DNA replication and repair protein RecR [Shewanella sp. W3-18-1] gi|145565086|gb|ABP76021.1| recombination protein RecR [Shewanella putrefaciens CN-32] gi|319426699|gb|ADV54773.1| recombination protein RecR [Shewanella putrefaciens 200] Length = 199 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + + +PG+ K A R+ +L + + +S + H S ++ + Sbjct: 11 IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDVGHCQSCRTYTEETL 68 >gi|315639715|ref|ZP_07894854.1| exodeoxyribonuclease V alpha subunit [Enterococcus italicus DSM 15952] gi|315484492|gb|EFU74949.1| exodeoxyribonuclease V alpha subunit [Enterococcus italicus DSM 15952] Length = 824 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 11/23 (47%) Query: 112 QIPGISMKIASRIMTELKGKAIS 134 + PGI K A I+ L AI Sbjct: 97 KFPGIGKKTAETIVNALGDDAIE 119 >gi|126174785|ref|YP_001050934.1| recombination protein RecR [Shewanella baltica OS155] gi|166221962|sp|A3D5Q2|RECR_SHEB5 RecName: Full=Recombination protein recR gi|125997990|gb|ABN62065.1| recombination protein RecR [Shewanella baltica OS155] Length = 199 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + + +PG+ K A R+ +L + + +S + H S ++ + Sbjct: 11 IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDVGHCQSCRTYTEETL 68 >gi|29653995|ref|NP_819687.1| recombination protein RecR [Coxiella burnetii RSA 493] gi|153209000|ref|ZP_01947194.1| recombination protein RecR [Coxiella burnetii 'MSU Goat Q177'] gi|154706620|ref|YP_001424073.1| recombination protein RecR [Coxiella burnetii Dugway 5J108-111] gi|161831096|ref|YP_001596583.1| recombination protein RecR [Coxiella burnetii RSA 331] gi|165920274|ref|ZP_02219546.1| recombination protein RecR [Coxiella burnetii RSA 334] gi|212219111|ref|YP_002305898.1| recombination protein RecR [Coxiella burnetii CbuK_Q154] gi|73621482|sp|Q83DP0|RECR_COXBU RecName: Full=Recombination protein recR gi|29541258|gb|AAO90201.1| recombination protein [Coxiella burnetii RSA 493] gi|120575537|gb|EAX32161.1| recombination protein RecR [Coxiella burnetii 'MSU Goat Q177'] gi|154355906|gb|ABS77368.1| recombination protein [Coxiella burnetii Dugway 5J108-111] gi|161762963|gb|ABX78605.1| recombination protein RecR [Coxiella burnetii RSA 331] gi|165916830|gb|EDR35434.1| recombination protein RecR [Coxiella burnetii RSA 334] gi|212013373|gb|ACJ20753.1| recombination protein [Coxiella burnetii CbuK_Q154] Length = 201 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 18/56 (32%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN 162 + + +PGI K A R+ L K+ + D Q C + Sbjct: 10 IEALQCLPGIGPKSAQRMAFHLLAKSGQAKGLALSDALQSAIRQVGECKLCQIYTE 65 >gi|75908470|ref|YP_322766.1| recombination protein RecR [Anabaena variabilis ATCC 29413] gi|123609556|sp|Q3MAW5|RECR_ANAVT RecName: Full=Recombination protein recR gi|75702195|gb|ABA21871.1| DNA replication and repair protein RecR [Anabaena variabilis ATCC 29413] Length = 185 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 5/16 (31%), Positives = 9/16 (56%) Query: 111 AQIPGISMKIASRIMT 126 ++PG+ K A R+ Sbjct: 2 QRLPGVGPKTAQRLAL 17 >gi|312136000|ref|YP_004003338.1| tn7-like transposition protein c [Caldicellulosiruptor owensensis OL] gi|311776051|gb|ADQ05538.1| Tn7-like transposition protein C [Caldicellulosiruptor owensensis OL] Length = 553 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 S AI L+ L +A AV V++ E ++ S+++ A++ +S Sbjct: 448 SVKEQAIIKLLELNIEAKKAQKAVEQVIEAEGEKSNVSELVVKAIQLLSS 497 >gi|229824042|ref|ZP_04450111.1| hypothetical protein GCWU000282_01346 [Catonella morbi ATCC 51271] gi|229786396|gb|EEP22510.1| hypothetical protein GCWU000282_01346 [Catonella morbi ATCC 51271] Length = 222 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 DQ L+ + + Q G G++ A ++S +A+ +I + + +PG Sbjct: 120 DQQSLYV-PTIEEWQAESQGPQANGTGSQAA--IVSSPSASSGKVNINQADLSQLETLPG 176 Query: 116 ISMKIASRIM 125 I K A I+ Sbjct: 177 IGAKKAQAII 186 >gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286] gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286] Length = 851 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 SV VG A +L + VE+++ + + + G+ A R Sbjct: 797 SVAEVGPVTARALLEHFGS---VEAVMTADEDELMDVDGVGEVTAER 840 >gi|322412122|gb|EFY03030.1| putative competence protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 220 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 73 MLLQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LQ + G+G + A +L + L + + Q+ GI K ++ EL Sbjct: 167 EELQRISGIGVKRAQDILETRDSLGGFKT---LDD---LRQVSGIGEKTLEKLKHEL 217 >gi|325283369|ref|YP_004255910.1| Recombination protein recR [Deinococcus proteolyticus MRP] gi|324315178|gb|ADY26293.1| Recombination protein recR [Deinococcus proteolyticus MRP] Length = 198 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 13/22 (59%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 + ++++PGI K A R+ L Sbjct: 11 IRELSRLPGIGPKSAQRLAFHL 32 >gi|293374917|ref|ZP_06621215.1| recombination protein RecR [Turicibacter sanguinis PC909] gi|325844363|ref|ZP_08168118.1| recombination protein RecR [Turicibacter sp. HGF1] gi|292646466|gb|EFF64478.1| recombination protein RecR [Turicibacter sanguinis PC909] gi|325489168|gb|EGC91551.1| recombination protein RecR [Turicibacter sp. HGF1] Length = 200 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++++PGI K A R+ Sbjct: 11 IESLSKLPGIGNKTAERL 28 >gi|222480840|ref|YP_002567077.1| Ribosomal protein L32e [Halorubrum lacusprofundi ATCC 49239] gi|222453742|gb|ACM58007.1| Ribosomal protein L32e [Halorubrum lacusprofundi ATCC 49239] Length = 236 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 71 WFMLLQSVQGVGARVA--MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ + GVG A + T ++ + + ++Q+ G+ +A+RI Sbjct: 1 MAEELEDISGVGPSKADPLRAAGYETVEDVKAASQSE----LSQVDGVGNALAARI 52 >gi|302390829|ref|YP_003826649.1| DNA replication and repair protein RecR [Acetohalobium arabaticum DSM 5501] gi|302202906|gb|ADL11584.1| DNA replication and repair protein RecR [Acetohalobium arabaticum DSM 5501] Length = 201 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 10/18 (55%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++PGI K A R+ Sbjct: 12 IGKLTKLPGIGPKSAQRL 29 >gi|294501315|ref|YP_003565015.1| ComE operon protein [Bacillus megaterium QM B1551] gi|294351252|gb|ADE71581.1| ComE operon protein [Bacillus megaterium QM B1551] Length = 211 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ++ G+G A ++S L +++ + Q+ GI K +I Sbjct: 159 ELQTLNGIGPSKASAIVSYREENGLFQTVED-----LGQVSGIGEKSLEKI 204 >gi|251782856|ref|YP_002997159.1| putative competence protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391486|dbj|BAH81945.1| putative competence protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 220 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 73 MLLQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LQ + G+G + A +L + L + + Q+ GI K ++ EL Sbjct: 167 EELQRISGIGVKRAQDILETRDSLGGFKT---LDD---LRQVSGIGEKTLEKLKHEL 217 >gi|153001130|ref|YP_001366811.1| recombination protein RecR [Shewanella baltica OS185] gi|160875800|ref|YP_001555116.1| recombination protein RecR [Shewanella baltica OS195] gi|217972948|ref|YP_002357699.1| recombination protein RecR [Shewanella baltica OS223] gi|304409213|ref|ZP_07390834.1| recombination protein RecR [Shewanella baltica OS183] gi|307303216|ref|ZP_07582971.1| recombination protein RecR [Shewanella baltica BA175] gi|166221963|sp|A6WPK9|RECR_SHEB8 RecName: Full=Recombination protein recR gi|189029373|sp|A9L594|RECR_SHEB9 RecName: Full=Recombination protein recR gi|254790782|sp|B8E703|RECR_SHEB2 RecName: Full=Recombination protein recR gi|151365748|gb|ABS08748.1| recombination protein RecR [Shewanella baltica OS185] gi|160861322|gb|ABX49856.1| recombination protein RecR [Shewanella baltica OS195] gi|217498083|gb|ACK46276.1| recombination protein RecR [Shewanella baltica OS223] gi|304353034|gb|EFM17431.1| recombination protein RecR [Shewanella baltica OS183] gi|306913576|gb|EFN43998.1| recombination protein RecR [Shewanella baltica BA175] gi|315267990|gb|ADT94843.1| recombination protein RecR [Shewanella baltica OS678] Length = 199 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + + +PG+ K A R+ +L + + +S + H S ++ + Sbjct: 11 IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDVGHCQSCRTYTEETL 68 >gi|310826416|ref|YP_003958773.1| recombination protein RecR [Eubacterium limosum KIST612] gi|308738150|gb|ADO35810.1| recombination protein RecR [Eubacterium limosum KIST612] Length = 199 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 11/24 (45%) Query: 107 SKVIAQIPGISMKIASRIMTELKG 130 + ++PGI K A R+ L Sbjct: 12 VTELGKLPGIGEKTAQRLAFHLID 35 >gi|182438618|ref|YP_001826337.1| putative exodeoxyribonuclease V [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779267|ref|ZP_08238532.1| helicase, RecD/TraA family [Streptomyces cf. griseus XylebKG-1] gi|178467134|dbj|BAG21654.1| putative exodeoxyribonuclease V [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659600|gb|EGE44446.1| helicase, RecD/TraA family [Streptomyces cf. griseus XylebKG-1] Length = 741 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++G+G +A + + L II + K + ++PG+ K Sbjct: 94 IKGIGPVMADRITTHFGVDTLD--IIEREPKRLVEVPGLGPK 133 >gi|282852795|ref|ZP_06262137.1| RuvA, C-terminal domain protein [Lactobacillus gasseri 224-1] gi|282556537|gb|EFB62157.1| RuvA, C-terminal domain protein [Lactobacillus gasseri 224-1] Length = 43 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + ALV LGY Q + + K +N AD I+ AL + Sbjct: 1 MLALVALGYTQKEVDRITPKLAKLPENTADG--YIKEALALL 40 >gi|212694992|ref|ZP_03303120.1| hypothetical protein BACDOR_04529 [Bacteroides dorei DSM 17855] gi|212662445|gb|EEB23019.1| hypothetical protein BACDOR_04529 [Bacteroides dorei DSM 17855] Length = 198 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 110 IAQIPGISMKIASRIMTEL 128 A++PG+ K A R++ L Sbjct: 10 FAKLPGVGRKTAMRLVLHL 28 >gi|217967981|ref|YP_002353487.1| PHP domain protein [Dictyoglomus turgidum DSM 6724] gi|217337080|gb|ACK42873.1| PHP domain protein [Dictyoglomus turgidum DSM 6724] Length = 580 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Query: 65 SDLDRQWFM--LLQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGI 116 D++R F L ++G+G + + +T EL + I + + +IPGI Sbjct: 42 EDIER-LFKQGKLYQIKGIGESIGQKIKEYLTTGKVSYLEELRKEIPPE-ILELLKIPGI 99 Query: 117 SMKIASRIMTEL 128 K+A R+ EL Sbjct: 100 GPKLAYRLYAEL 111 >gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 892 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 13/54 (24%) Query: 83 ARVAMGVLSRITATELVE------------SIILQNSK-VIAQIPGISMKIASR 123 + + LSR+T + + ++ ++ + +PG+ K A++ Sbjct: 154 PKKGVSELSRMTPEAVEAKYGVSPTHYPELAALVGDTSDNLTGVPGVGPKTAAK 207 >gi|294010026|ref|YP_003543486.1| DNA polymerase III delta subunit [Sphingobium japonicum UT26S] gi|292673356|dbj|BAI94874.1| DNA polymerase III delta subunit [Sphingobium japonicum UT26S] Length = 345 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 121 ASRIMTE---LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI + L+ L+ ++ + M ++ A++AL+ +A Sbjct: 51 AERIDLDPSTLRDDPARLADEAASFSMFGDRRWIRVTGMGEESVPALNALL-------EA 103 Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202 A V+ + S++++LAL Sbjct: 104 EAAGNPVIAVAGALKGTSKLLKLAL 128 >gi|167722536|ref|ZP_02405772.1| DNA polymerase X family protein [Burkholderia pseudomallei DM98] Length = 600 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|167565137|ref|ZP_02358053.1| PHP domain N-terminal region family protein [Burkholderia oklahomensis EO147] Length = 643 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 16/103 (15%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L E+ + + PG K A I Sbjct: 122 ELLGVPGLGAKRVRALHDALHVETLEQLKEAAESGKIRGL---PGFGEKTEAHIAEAIGA 178 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN 169 L+ K+ +S + + + ALV Sbjct: 179 RLRRKSQRF------LLSFATQYLTPLLTYLRETPGVSEALVA 215 >gi|20088979|ref|NP_615054.1| hypothetical protein MA0080 [Methanosarcina acetivorans C2A] gi|19913829|gb|AAM03534.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 707 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 75 LQSVQGVGARVAMGVLSRITATELV-ESIILQNSKVIAQIPGI 116 LQ + G+G RVA ++ + E ++I+ + ++++ G+ Sbjct: 10 LQELNGIGERVACRLVEHFGSEEAALQAILEGDIASLSEVNGV 52 >gi|323127660|gb|ADX24957.1| putative competence protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 220 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 73 MLLQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LQ + G+G + A +L + L + + Q+ GI K ++ EL Sbjct: 167 EELQRISGIGVKRAQDILETRDSLGGFKT---LDD---LRQVSGIGEKTLEKLKHEL 217 >gi|225016312|ref|ZP_03705504.1| hypothetical protein CLOSTMETH_00215 [Clostridium methylpentosum DSM 5476] gi|224950917|gb|EEG32126.1| hypothetical protein CLOSTMETH_00215 [Clostridium methylpentosum DSM 5476] Length = 151 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 7/55 (12%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQN-SKVIAQIPGISMKIASRIM 125 + L + G+G A +LS + I + + + Q+ GI K +++ Sbjct: 97 YEQLVLINGIGDTKANAILS------FRDQIGQFDSLEQLQQVKGIGEKTYQKLI 145 >gi|87199082|ref|YP_496339.1| excinuclease ABC subunit C [Novosphingobium aromaticivorans DSM 12444] gi|119367680|sp|Q2G9G8|UVRC_NOVAD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|87134763|gb|ABD25505.1| Excinuclease ABC subunit C [Novosphingobium aromaticivorans DSM 12444] Length = 658 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G +L V + L++ + + PG+S +A I Sbjct: 604 LDEIPGIGPARKRALLLHFGTAGKVRAASLED---LQRAPGVSAAVAQTI 650 >gi|20807407|ref|NP_622578.1| DNA uptake protein and related DNA-binding proteins [Thermoanaerobacter tengcongensis MB4] gi|20515928|gb|AAM24182.1| DNA uptake protein and related DNA-binding proteins [Thermoanaerobacter tengcongensis MB4] Length = 196 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + V G +V S I + V I + + +PGI A RI+ Sbjct: 109 EQMIKVPKKGEKVDTSFASGIDGAKKVN-INTATKEELQTLPGIGPVTAERII 160 >gi|307297020|ref|ZP_07576836.1| DNA polymerase III, delta subunit [Sphingobium chlorophenolicum L-1] gi|306877546|gb|EFN08774.1| DNA polymerase III, delta subunit [Sphingobium chlorophenolicum L-1] Length = 345 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 121 ASRIMTE---LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI + L+ L+ +K I M ++ A++AL+ +A Sbjct: 51 AERIDLDGPTLRDDPARLADEAAAFSMFGDKRWIRINGMGEESLPALTALL-------EA 103 Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202 A V+ + S++++LAL Sbjct: 104 EAAGNPVIAVAGALKPTSKLLKLAL 128 >gi|322391100|ref|ZP_08064597.1| cobalt ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus parasanguinis ATCC 903] gi|321142200|gb|EFX37681.1| cobalt ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus parasanguinis ATCC 903] Length = 277 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 8/76 (10%) Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +++ + K L S +Q+++ V + + AL NLGY +++ V Sbjct: 68 QQLI---QDKKKDLFS-YRQEVNMVFQNPEQQLFYTIAKDDIGMALENLGYSKEECEKRV 123 Query: 182 VSVLKKEKNIADDSQI 197 + + D ++ Sbjct: 124 QEAI----ELMDIEEL 135 >gi|283778801|ref|YP_003369556.1| PHP domain-containing protein [Pirellula staleyi DSM 6068] gi|283437254|gb|ADB15696.1| PHP domain protein [Pirellula staleyi DSM 6068] Length = 578 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 7/55 (12%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 L + GVG + A + L + EL + + + G + K +++ Sbjct: 95 LLRIPGVGPKKAAALYKELGVKSLEELKSACEQGKVREL---KGFAAKT-EQLIL 145 >gi|147679038|ref|YP_001213253.1| transposase and inactivated derivatives [Pelotomaculum thermopropionicum SI] gi|146275135|dbj|BAF60884.1| transposase and inactivated derivatives [Pelotomaculum thermopropionicum SI] Length = 405 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ ++ IPG+ + A +I+ E Sbjct: 245 EEDLGLLDTIPGVGRRTAEQILAE 268 >gi|119476223|ref|ZP_01616574.1| recombination protein RecR [marine gamma proteobacterium HTCC2143] gi|119450087|gb|EAW31322.1| recombination protein RecR [marine gamma proteobacterium HTCC2143] Length = 199 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Query: 107 SKVIAQIPGISMKIASRIMTEL--KGKAISLSSVVQQDMS 144 + + +PG+ K A R+ L + + L Q D + Sbjct: 11 VEALRCLPGVGPKSAQRMAFHLLERDREGGLKLAEQLDTA 50 >gi|306821329|ref|ZP_07454938.1| recombination protein R [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550616|gb|EFM38598.1| recombination protein R [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 200 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 107 SKVIAQIPGISMKIASRI 124 + ++++PGI K A R+ Sbjct: 12 IRQLSKLPGIGQKTAQRL 29 >gi|326388848|ref|ZP_08210430.1| excinuclease ABC subunit C [Novosphingobium nitrogenifigens DSM 19370] gi|326206448|gb|EGD57283.1| excinuclease ABC subunit C [Novosphingobium nitrogenifigens DSM 19370] Length = 671 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G +L V + L++ + + PG+S +A I Sbjct: 619 LDEIPGIGPARKRALLLHFGTAGKVRAASLED---LQRAPGVSAAVAQTI 665 >gi|119897250|ref|YP_932463.1| recombination protein RecR [Azoarcus sp. BH72] gi|171704428|sp|A1K421|RECR_AZOSB RecName: Full=Recombination protein recR gi|119669663|emb|CAL93576.1| recombination protein RecR [Azoarcus sp. BH72] Length = 199 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + +PG+ K A R+ L + ++ + + + H +F+ A+ Sbjct: 12 IAALRCLPGVGPKSAQRMAYHLLQRDQRGAARLAGALGHALEVLRHCQRCNNFSEEAV 69 >gi|298492185|ref|YP_003722362.1| recombination protein RecR ['Nostoc azollae' 0708] gi|298234103|gb|ADI65239.1| recombination protein RecR ['Nostoc azollae' 0708] Length = 189 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 2 IEQLQRLPGVGPKSAQRLAL 21 >gi|159030384|emb|CAO91280.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 203 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 6/40 (15%) Query: 87 MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 G+ + T L I + ++PG+ K A R+ Sbjct: 3 RGLTAIYTPP-LARLIEQ-----LQKLPGVGPKSAQRLAL 36 >gi|323352667|ref|ZP_08087637.1| M20/M25/M40 family peptidase [Streptococcus sanguinis VMC66] gi|322121703|gb|EFX93449.1| M20/M25/M40 family peptidase [Streptococcus sanguinis VMC66] Length = 445 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179 A + + +LK + ++ + N A + ++ L LGY + A Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241 Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207 V+ + K K+ A + IIRLA L+ + Sbjct: 242 VTVIGLPKHAKDAAQGVNAIIRLAKVLQPLDS 273 >gi|288553661|ref|YP_003425596.1| hypothetical protein BpOF4_03190 [Bacillus pseudofirmus OF4] gi|288544821|gb|ADC48704.1| hypothetical protein BpOF4_03190 [Bacillus pseudofirmus OF4] Length = 571 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 L VQG+G + + L + A L ++ + + +A G K +I+ L Sbjct: 90 LLKVQGLGGKKIGKLYQELGVVDAATLKQACEDKKVQALA---GFGKKTEEKILVAL 143 >gi|219856583|ref|YP_002473705.1| hypothetical protein CKR_3240 [Clostridium kluyveri NBRC 12016] gi|219570307|dbj|BAH08291.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 753 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 + G+G A ++ + L I+ N + + +I GI K Sbjct: 91 ISGIGPVTAKKIVEKFGKDTLH--ILDNNIERLKEIEGIGSK 130 >gi|91773310|ref|YP_566002.1| DNA mismatch repair protein MutS-like protein [Methanococcoides burtonii DSM 6242] gi|91712325|gb|ABE52252.1| MutS domain protein [Methanococcoides burtonii DSM 6242] Length = 700 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 75 LQSVQGVGARVAMGVLSRITATELV-ESIILQNSKVIAQIPGISMKIASRIMTELK 129 LQ + +G ++A + ++I+ + I+++ G+ + A ++ E++ Sbjct: 4 LQDIPRIGEKMAKRFQEHFGGEDRAMDAILSGDIASISEVEGVGQRYAISLVHEVR 59 >gi|146298126|ref|YP_001192717.1| recombination protein RecR [Flavobacterium johnsoniae UW101] gi|189029362|sp|A5FN24|RECR_FLAJO RecName: Full=Recombination protein recR gi|146152544|gb|ABQ03398.1| recombination protein RecR [Flavobacterium johnsoniae UW101] Length = 206 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 E +I + ++Q+PGI + A R++ L Sbjct: 2 EFSSKLIEKAVNEMSQLPGIGKRTALRLVLHL 33 >gi|220932457|ref|YP_002509365.1| excinuclease ABC, C subunit [Halothermothrix orenii H 168] gi|219993767|gb|ACL70370.1| excinuclease ABC, C subunit [Halothermothrix orenii H 168] Length = 607 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 R +L + GVG + +LS + +I + ++ GIS K A R++ + Sbjct: 545 RLTHTMLDEIPGVGPKRRKALLSHFGSLG---AIRKATIGQLKEVDGISNKTA-RVIYD 599 >gi|254445015|ref|ZP_05058491.1| hypothetical protein VDG1235_3258 [Verrucomicrobiae bacterium DG1235] gi|198259323|gb|EDY83631.1| hypothetical protein VDG1235_3258 [Verrucomicrobiae bacterium DG1235] Length = 154 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 L ++ G+G A +L++ VE I + + + ++PG A ++ Sbjct: 5 LITIAGIGPSAA-AILAKNGYA-CVEDIAKSDVETLCEVPGFGPVRAENVI 53 >gi|119774745|ref|YP_927485.1| excinuclease ABC subunit C [Shewanella amazonensis SB2B] gi|119767245|gb|ABL99815.1| Excinuclease ABC subunit C [Shewanella amazonensis SB2B] Length = 606 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Query: 74 LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L+S+ G+G + +L + ++ + + + +A++PGIS ++A I L+G Sbjct: 553 TLESIPGIGPKRRKALLQYLGGLQQVKNASVAE----LAKVPGISAEMAQTIHDALRG 606 >gi|255994735|ref|ZP_05427870.1| helicase, RecD/TraA family [Eubacterium saphenum ATCC 49989] gi|255993448|gb|EEU03537.1| helicase, RecD/TraA family [Eubacterium saphenum ATCC 49989] Length = 741 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 65 SDLDRQWFMLLQS--VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 + + +L S ++GVG + A ++ L II + K + ++ GIS K+A Sbjct: 80 EKNEDEIRAVLLSGIIKGVGEKRADIIIEAFGEKTLD--IIENDYKKLEKLGGISKKLAK 137 Query: 123 RI 124 I Sbjct: 138 EI 139 >gi|254482872|ref|ZP_05096109.1| endonuclease III [marine gamma proteobacterium HTCC2148] gi|214036953|gb|EEB77623.1| endonuclease III [marine gamma proteobacterium HTCC2148] Length = 217 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 73 MLLQSVQGVGARVAMGV--LSRITATELVESIILQNSKVIAQIPGISMKIA 121 L+ G+ + + + LS I E ++++ + + + ++PG+ K A Sbjct: 74 RLIIRPCGLSPQKSKAIKRLSEILLDE-HDAVVPADMEALERLPGVGHKTA 123 >gi|153956266|ref|YP_001397031.1| exodeoxyribonuclease [Clostridium kluyveri DSM 555] gi|146349124|gb|EDK35660.1| Predicted exodeoxyribonuclease [Clostridium kluyveri DSM 555] Length = 750 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 + G+G A ++ + L I+ N + + +I GI K Sbjct: 88 ISGIGPVTAKKIVEKFGKDTLH--ILDNNIERLKEIEGIGSK 127 >gi|92118613|ref|YP_578342.1| excinuclease ABC subunit C [Nitrobacter hamburgensis X14] gi|119367677|sp|Q1QIR5|UVRC_NITHX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91801507|gb|ABE63882.1| Excinuclease ABC subunit C [Nitrobacter hamburgensis X14] Length = 690 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 14/103 (13%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81 ++ P R L + D F+ +R + R F+ R+ LQ V G+ Sbjct: 587 LFLPDRPAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRRKDIREAGLQEVPGI 641 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 G +L L E I + + ++PGIS + A +I Sbjct: 642 GPARKRALLHHFGT--LKE-IERASVADLGKVPGISAESARKI 681 >gi|221324008|ref|ZP_03605302.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis subsp. subtilis str. SMY] Length = 205 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ + GVG A +++ ++I I ++ GI K +I Sbjct: 152 EELQGISGVGPSKAEAIIAYREENGRFQTIED-----ITKVSGIGEKSFEKI 198 >gi|167718020|ref|ZP_02401256.1| tetratricopeptide repeat protein [Burkholderia pseudomallei DM98] Length = 579 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 83 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 136 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 137 QPMLSQELARATGENRGQAII--ALQAL 162 >gi|78221351|ref|YP_383098.1| radical SAM family protein [Geobacter metallireducens GS-15] gi|78192606|gb|ABB30373.1| Radical SAM [Geobacter metallireducens GS-15] Length = 431 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 18/110 (16%) Query: 24 VCYIIYCPIRTLSCLGKI-GDFCTLFVE-THMRQDQIRLFGFLS----DLDRQWFMLLQS 77 V Y + P+ T + L + G + + +R +GF + D + L Sbjct: 252 VYYSAFIPVNTDTRLPSVVGTPPLVREHRLYQADWLMRYYGFAAGELLDEEHPNLDLSLD 311 Query: 78 VQGVGARV--AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + A+ L + +++ ++PGI ++ A RI+ Sbjct: 312 -----PKAGWALRNLHLFPVE-----VNRAPLELLLRVPGIGVRSAQRIV 351 >gi|91975761|ref|YP_568420.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisB5] gi|119367826|sp|Q13BM0|UVRC_RHOPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91682217|gb|ABE38519.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisB5] Length = 695 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 16/104 (15%) Query: 28 IYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML------LQSVQGV 81 ++ P R L + D F+ +R + R F+ R+ LQ + G+ Sbjct: 592 LFMPEREAIKL-EPRDPVLYFI-QRLRDEAHR---FVIGSHRKLRKKDIREAGLQEIPGI 646 Query: 82 GARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 G +L T E+ + + + + ++PGIS + A RI Sbjct: 647 GPTRKRALLHHFGTLKEIERA-SIGD---LGKVPGISAESARRI 686 >gi|332971117|gb|EGK10084.1| recombination protein R [Psychrobacter sp. 1501(2011)] Length = 195 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 11/22 (50%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 K + +PG+ K A R+ L Sbjct: 10 VKQLRVLPGVGQKTAQRMALHL 31 >gi|332670249|ref|YP_004453257.1| DNA polymerase III subunit alpha [Cellulomonas fimi ATCC 484] gi|332339287|gb|AEE45870.1| DNA polymerase III, alpha subunit [Cellulomonas fimi ATCC 484] Length = 1192 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 18/117 (15%) Query: 79 QGVGARVAMGVLSRITATELVE-SIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 G G VA+GV + A ++ L +A + + +A R++ E + Sbjct: 938 SGTGPAVAVGVRTGTDAPVPRSLAVRLG----LASVRSVGEDVAQRLVDERR-------- 985 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAIS---ALVNLGYGQDQATTAVVSVLKKEKNI 191 ++ + + + A++ AL +LG + +A A ++ ++ + Sbjct: 986 --AHGPFADLRDLVRRVRLSTAQLEALATAGALDSLGGTRREALWAAGALAQEGPDT 1040 >gi|116668972|ref|YP_829905.1| levanase [Arthrobacter sp. FB24] gi|116609081|gb|ABK01805.1| Levanase [Arthrobacter sp. FB24] Length = 1267 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 + IPG+ ++A +TEL G S ++ + S SF + A A Sbjct: 852 SLKDIPGVGPRLAQEPITELAGLRTSTWQASDVTVTPTSANPLSAASGRSFELEAEVA 909 >gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035] gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035] Length = 934 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 12/106 (11%) Query: 25 CYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFGFLSDLDR--QWFMLLQSVQGV 81 Y I TL+C + +G T+ +D ++L G ++ L V+GV Sbjct: 116 GYEADDIIATLACQARDLGGRVTII---SSDKDLMQLVG--DGVEMLDAMKNRLIDVEGV 170 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 + + + V+++ + + PGI +K A+ ++ E Sbjct: 171 REKFGVSPDRVVD----VQALAGDSVDNVPGAPGIGIKTAALLINE 212 >gi|329767200|ref|ZP_08258727.1| hypothetical protein HMPREF0428_00424 [Gemella haemolysans M341] gi|328836867|gb|EGF86514.1| hypothetical protein HMPREF0428_00424 [Gemella haemolysans M341] Length = 209 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 15/63 (23%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV---IAQIPGISMKIASRIMTELK 129 L + GVG A ++S + K I ++ GI +I K Sbjct: 157 EQLMKISGVGKTKAEAIISYREK--------NGDFKKKEDITKVKGIGKATFEKI----K 204 Query: 130 GKA 132 K Sbjct: 205 DKI 207 >gi|297198890|ref|ZP_06916287.1| excinuclease ABC, C subunit [Streptomyces sviceus ATCC 29083] gi|297147230|gb|EDY55222.2| excinuclease ABC, C subunit [Streptomyces sviceus ATCC 29083] Length = 684 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 18/93 (19%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L ++ D F T+ R R F L V G+G +L Sbjct: 557 LYLLQRVRDEAHRFAITYQRT---------KRAQR--FRSSPLDDVPGLGDTRKQALLKH 605 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRI 124 + +L + I Q I ++PGI K A I Sbjct: 606 FGSLKKLRSATIDQ----ICEVPGIGRKTAETI 634 >gi|238855203|ref|ZP_04645522.1| conserved virulence factor B [Lactobacillus jensenii 269-3] gi|260664566|ref|ZP_05865418.1| RNA-binding protein [Lactobacillus jensenii SJ-7A-US] gi|282932503|ref|ZP_06337928.1| conserved virulence factor B [Lactobacillus jensenii 208-1] gi|313471968|ref|ZP_07812460.1| S1 RNA binding domain protein [Lactobacillus jensenii 1153] gi|238832095|gb|EEQ24413.1| conserved virulence factor B [Lactobacillus jensenii 269-3] gi|260561631|gb|EEX27603.1| RNA-binding protein [Lactobacillus jensenii SJ-7A-US] gi|281303452|gb|EFA95629.1| conserved virulence factor B [Lactobacillus jensenii 208-1] gi|313449039|gb|EFR61307.1| S1 RNA binding domain protein [Lactobacillus jensenii 1153] Length = 292 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 1 MIGKI-KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50 M+G I KG + ++ + V GV Y + T + ++GD F+ Sbjct: 1 MLGTIQKGKVIDKNDEAYYVQVDGVTYELNKLEVTQEQMPQLGDIVQGFIY 51 >gi|167909465|ref|ZP_02496556.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 112] Length = 581 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 85 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 138 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 139 QPMLSQELARATGENRGQAII--ALQAL 164 >gi|167901247|ref|ZP_02488452.1| tetratricopeptide repeat protein [Burkholderia pseudomallei NCTC 13177] Length = 526 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 30 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 83 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 84 QPMLSQELARATGENRGQAII--ALQAL 109 >gi|117920887|ref|YP_870079.1| recombination protein RecR [Shewanella sp. ANA-3] gi|166221966|sp|A0KY04|RECR_SHESA RecName: Full=Recombination protein recR gi|117613219|gb|ABK48673.1| DNA replication and repair protein RecR [Shewanella sp. ANA-3] Length = 199 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 23/58 (39%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + + +PG+ K A R+ +L + + +S + H S ++ ++ Sbjct: 11 IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDIGHCQSCRTYTEESL 68 >gi|315282388|ref|ZP_07870810.1| ComE operon protein 1 [Listeria marthii FSL S4-120] gi|313613970|gb|EFR87692.1| ComE operon protein 1 [Listeria marthii FSL S4-120] Length = 200 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + + GI K ++ Sbjct: 149 LQQVPGIGDSKATAIIEYREKEGLFQTI--GD---LKNVSGIGEKTVEKL 193 >gi|53718164|ref|YP_107150.1| hypothetical protein BPSL0525 [Burkholderia pseudomallei K96243] gi|53724081|ref|YP_104601.1| TPR domain-containing protein [Burkholderia mallei ATCC 23344] gi|76810361|ref|YP_332170.1| hypothetical protein BURPS1710b_0757 [Burkholderia pseudomallei 1710b] gi|121600080|ref|YP_991436.1| TPR domain-containing protein [Burkholderia mallei SAVP1] gi|124385353|ref|YP_001027488.1| TPR domain-containing protein [Burkholderia mallei NCTC 10229] gi|126439979|ref|YP_001057625.1| TPR repeat-containing protein [Burkholderia pseudomallei 668] gi|126448388|ref|YP_001082454.1| TPR domain-containing protein [Burkholderia mallei NCTC 10247] gi|126452823|ref|YP_001064871.1| TPR repeat-containing protein [Burkholderia pseudomallei 1106a] gi|134279447|ref|ZP_01766159.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 305] gi|237810775|ref|YP_002895226.1| TPR domain protein [Burkholderia pseudomallei MSHR346] gi|238561327|ref|ZP_00442181.2| TPR domain protein [Burkholderia mallei GB8 horse 4] gi|242314624|ref|ZP_04813640.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1106b] gi|251767334|ref|ZP_04820068.1| tetratricopeptide repeat protein [Burkholderia mallei PRL-20] gi|254174735|ref|ZP_04881396.1| TPR domain protein [Burkholderia mallei ATCC 10399] gi|254181863|ref|ZP_04888460.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1655] gi|254207022|ref|ZP_04913373.1| tetratricopeptide repeat protein [Burkholderia mallei JHU] gi|254258660|ref|ZP_04949714.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1710a] gi|254357501|ref|ZP_04973775.1| tetratricopeptide repeat protein [Burkholderia mallei 2002721280] gi|52208578|emb|CAH34514.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|52427504|gb|AAU48097.1| TPR domain protein [Burkholderia mallei ATCC 23344] gi|76579814|gb|ABA49289.1| putative membrane protein [Burkholderia pseudomallei 1710b] gi|121228890|gb|ABM51408.1| TPR domain protein [Burkholderia mallei SAVP1] gi|124293373|gb|ABN02642.1| TPR domain protein [Burkholderia mallei NCTC 10229] gi|126219472|gb|ABN82978.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 668] gi|126226465|gb|ABN90005.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1106a] gi|126241258|gb|ABO04351.1| TPR domain protein [Burkholderia mallei NCTC 10247] gi|134248647|gb|EBA48729.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 305] gi|147752564|gb|EDK59630.1| tetratricopeptide repeat protein [Burkholderia mallei JHU] gi|148026565|gb|EDK84650.1| tetratricopeptide repeat protein [Burkholderia mallei 2002721280] gi|160695780|gb|EDP85750.1| TPR domain protein [Burkholderia mallei ATCC 10399] gi|184212401|gb|EDU09444.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1655] gi|237504659|gb|ACQ96977.1| TPR domain protein [Burkholderia pseudomallei MSHR346] gi|238524787|gb|EEP88218.1| TPR domain protein [Burkholderia mallei GB8 horse 4] gi|242137863|gb|EES24265.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1106b] gi|243063113|gb|EES45299.1| tetratricopeptide repeat protein [Burkholderia mallei PRL-20] gi|254217349|gb|EET06733.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 1710a] Length = 606 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 163 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 164 QPMLSQELARATGENRGQAII--ALQAL 189 >gi|87306911|ref|ZP_01089057.1| transcriptional regulator [Blastopirellula marina DSM 3645] gi|87290284|gb|EAQ82172.1| transcriptional regulator [Blastopirellula marina DSM 3645] Length = 216 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI +L+ K +S + + + S + AI AL G + + A Sbjct: 13 AQRIFLDLRSKILS-GDIESETRLTLRPLANEYESGINAVSEAIKALAAEGLVKLE-GQA 70 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 V+ ++ I+R+A Sbjct: 71 GARVIARDLKQIRGEYILRIA 91 >gi|257454438|ref|ZP_05619700.1| recombination protein RecR [Enhydrobacter aerosaccus SK60] gi|257448204|gb|EEV23185.1| recombination protein RecR [Enhydrobacter aerosaccus SK60] Length = 202 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 11/22 (50%) Query: 107 SKVIAQIPGISMKIASRIMTEL 128 K + +PG+ K A R+ L Sbjct: 10 VKQLKVLPGVGPKSAQRMALHL 31 >gi|167737036|ref|ZP_02409810.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 14] gi|167822669|ref|ZP_02454140.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 9] gi|167917494|ref|ZP_02504585.1| tetratricopeptide repeat protein [Burkholderia pseudomallei BCC215] Length = 602 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 106 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 159 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 160 QPMLSQELARATGENRGQAII--ALQAL 185 >gi|217419730|ref|ZP_03451236.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 576] gi|226199577|ref|ZP_03795134.1| tetratricopeptide repeat protein [Burkholderia pseudomallei Pakistan 9] gi|254187796|ref|ZP_04894308.1| tetratricopeptide repeat protein [Burkholderia pseudomallei Pasteur 52237] gi|254296086|ref|ZP_04963543.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 406e] gi|157805914|gb|EDO83084.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 406e] gi|157935476|gb|EDO91146.1| tetratricopeptide repeat protein [Burkholderia pseudomallei Pasteur 52237] gi|217397034|gb|EEC37050.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 576] gi|225928458|gb|EEH24488.1| tetratricopeptide repeat protein [Burkholderia pseudomallei Pakistan 9] Length = 606 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 110 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 163 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 164 QPMLSQELARATGENRGQAII--ALQAL 189 >gi|167814145|ref|ZP_02445825.1| tetratricopeptide repeat protein [Burkholderia pseudomallei 91] gi|167844241|ref|ZP_02469749.1| tetratricopeptide repeat protein [Burkholderia pseudomallei B7210] gi|254196773|ref|ZP_04903197.1| tetratricopeptide repeat protein [Burkholderia pseudomallei S13] gi|169653516|gb|EDS86209.1| tetratricopeptide repeat protein [Burkholderia pseudomallei S13] Length = 602 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 ++A R TE I+L++ D A +AL+ LG +A Sbjct: 106 PRMAQR-ATE-----IALAAQSPADALTAANLWREYSPGSQRAAQVDAALLVLGGKPAEA 159 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + L + II AL+A+ Sbjct: 160 QPMLSQELARATGENRGQAII--ALQAL 185 >gi|39934692|ref|NP_946968.1| hypothetical protein RPA1622 [Rhodopseudomonas palustris CGA009] gi|39648542|emb|CAE27063.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 426 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 12/108 (11%) Query: 93 ITATELVESIILQNSKVIAQIPGISMKI--ASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150 ++ +L K +Q I K +R+ EL K ++ ++ ++ + + Q Sbjct: 69 MSVDQLKN-------KTTSQFAEIGKKTDAINRLKLELTEKIAAIETLEAREKALQEQLQ 121 Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTA-VVSVLKKEKNIADDSQI 197 + + SA L + QA A + + L + +AD Q+ Sbjct: 122 TTEQNFAARTEELRSAEAAL--AEKQAELARINAELNERSTLADTRQV 167 >gi|16079613|ref|NP_390437.1| membrane bound high-affinity DNA-binding receptor [Bacillus subtilis subsp. subtilis str. 168] gi|221310484|ref|ZP_03592331.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|221314808|ref|ZP_03596613.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319730|ref|ZP_03601024.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis subsp. subtilis str. JH642] gi|321312044|ref|YP_004204331.1| membrane bound high-affinity DNA-binding receptor [Bacillus subtilis BSn5] gi|729154|sp|P39694|COMEA_BACSU RecName: Full=ComE operon protein 1 gi|289260|gb|AAC36905.1| comE ORF1 [Bacillus subtilis] gi|1303796|dbj|BAA12452.1| ComEA [Bacillus subtilis] gi|2635005|emb|CAB14501.1| membrane bound high-affinity DNA-binding receptor [Bacillus subtilis subsp. subtilis str. 168] gi|320018318|gb|ADV93304.1| membrane bound high-affinity DNA-binding receptor [Bacillus subtilis BSn5] Length = 205 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ + GVG A +++ ++I I ++ GI K +I Sbjct: 152 EELQGISGVGPSKAEAIIAYREENGRFQTIED-----ITKVSGIGEKSFEKI 198 >gi|312878707|ref|ZP_07738530.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311794516|gb|EFR11022.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 242 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 82 EEDMERLDTIPGVGRRTAEHIIAE 105 >gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1] gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1] Length = 684 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 17/89 (19%) Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS----- 122 +R F L ++ VG + A + +++++ + + + +P I K+A Sbjct: 513 ERLLFGL--GIRHVGEKAAKTLAEHFGT---IDALMSASEEELMAVPDIGPKVAQSIRQY 567 Query: 123 -------RIMTELKGKAISLSSVVQQDMS 144 +++ ELK ++++ + Q +S Sbjct: 568 FDTPRVRQLIQELKDLGVNMTYLGPQKVS 596 >gi|146282185|ref|YP_001172338.1| recombination protein RecR [Pseudomonas stutzeri A1501] gi|166221957|sp|A4VKJ5|RECR_PSEU5 RecName: Full=Recombination protein recR gi|145570390|gb|ABP79496.1| recombination protein RecR [Pseudomonas stutzeri A1501] Length = 199 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%) Query: 107 SKVIAQIPGISMKIASRIMTEL--KGKAISL 135 + +PG+ K A R+ +L + ++ L Sbjct: 11 IDALRILPGVGQKTAQRMALQLLERDRSGGL 41 >gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597] gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597] Length = 935 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 10/105 (9%) Query: 25 CYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL-QSVQGVG 82 Y I TLSC + G T+ +D ++L G L V+GV Sbjct: 118 GYEADDIIATLSCQAREAGGRVTII---SSDKDLMQLVG-GGVEMLDAMKNLRIDVEGVE 173 Query: 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 A+ +G + V+++ + + PGI +K A+ ++ E Sbjct: 174 AKFGVGPDRVVD----VQALAGDSVDNVPGAPGIGIKTAALLINE 214 >gi|189499727|ref|YP_001959197.1| helicase, RecD/TraA family [Chlorobium phaeobacteroides BS1] gi|189495168|gb|ACE03716.1| helicase, RecD/TraA family [Chlorobium phaeobacteroides BS1] Length = 728 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 V+GVG A ++ E V SII + + + +PGI K I+ Sbjct: 100 VKGVGQHFAKELVRAFG--EEVFSIIEKEPETLLTLPGIGKKRMEMIV 145 >gi|157693060|ref|YP_001487522.1| competence protein EA [Bacillus pumilus SAFR-032] gi|157681818|gb|ABV62962.1| competence protein EA [Bacillus pumilus SAFR-032] Length = 209 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LQ++ G+G A +++ R E + ++ + I G K R+ EL Sbjct: 157 ELQTINGIGPAKAEAIITYREEHGEFQQI---ED---LRNISGFGEKTIERLKNEL 206 >gi|294628736|ref|ZP_06707296.1| excinuclease ABC, C subunit [Streptomyces sp. e14] gi|292832069|gb|EFF90418.1| excinuclease ABC, C subunit [Streptomyces sp. e14] Length = 697 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 18/93 (19%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L +I D F T+ R + ++ F L V G+G ++ Sbjct: 572 LYLLQRIRDEAHRFAITYQR----------TKRAKR-FRAGPLDEVPGLGETRKRALIKH 620 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRI 124 + L + I Q I ++PGI +K A I Sbjct: 621 FGSVKRLRSATIDQ----IREVPGIGLKTAETI 649 >gi|291485009|dbj|BAI86084.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis subsp. natto BEST195] Length = 205 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ + GVG A +++ ++I I ++ GI K +I Sbjct: 152 EELQGISGVGPSKAEAIIAYREENGRFQTIED-----ITKVSGIGEKSFEKI 198 >gi|166367420|ref|YP_001659693.1| recombination protein RecR [Microcystis aeruginosa NIES-843] gi|166089793|dbj|BAG04501.1| recombination protein [Microcystis aeruginosa NIES-843] Length = 188 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 2 IEQLQKLPGVGPKSAQRLAL 21 >gi|311742584|ref|ZP_07716393.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM 15272] gi|311314212|gb|EFQ84120.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM 15272] Length = 648 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125 L V G+G ++ + + L + + + +AQ+PGI A I+ Sbjct: 579 LDDVAGLGPTRRKALMRQFGSLKRLRAATVEE----VAQVPGIGPATAQSIV 626 >gi|209364102|ref|YP_001424875.2| COME operon protein 1 [Coxiella burnetii Dugway 5J108-111] gi|212212970|ref|YP_002303906.1| COME operon protein 1 [Coxiella burnetii CbuG_Q212] gi|212218843|ref|YP_002305630.1| COME operon protein 1 [Coxiella burnetii CbuK_Q154] gi|215918990|ref|NP_819564.2| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii RSA 493] gi|206583875|gb|AAO90078.2| COME operon protein 1 [Coxiella burnetii RSA 493] gi|207082035|gb|ABS77203.2| COME operon protein 1 [Coxiella burnetii Dugway 5J108-111] gi|212011380|gb|ACJ18761.1| COME operon protein 1 [Coxiella burnetii CbuG_Q212] gi|212013105|gb|ACJ20485.1| COME operon protein 1 [Coxiella burnetii CbuK_Q154] Length = 123 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 LL +++G+G + A +++ +SI ++ +PGIS K +R++ Sbjct: 66 LLTTLKGIGVKKAKAIIAYRKKEGNFKSIE-----ALSSVPGISQKTVARLI 112 >gi|113970587|ref|YP_734380.1| recombination protein RecR [Shewanella sp. MR-4] gi|114047818|ref|YP_738368.1| recombination protein RecR [Shewanella sp. MR-7] gi|123130341|sp|Q0HHZ4|RECR_SHESM RecName: Full=Recombination protein recR gi|123326453|sp|Q0HU94|RECR_SHESR RecName: Full=Recombination protein recR gi|113885271|gb|ABI39323.1| DNA replication and repair protein RecR [Shewanella sp. MR-4] gi|113889260|gb|ABI43311.1| DNA replication and repair protein RecR [Shewanella sp. MR-7] Length = 199 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 23/58 (39%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + + +PG+ K A R+ +L + + +S + H S ++ ++ Sbjct: 11 IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDIGHCQSCRTYTEESL 68 >gi|327401381|ref|YP_004342220.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6] gi|327316889|gb|AEA47505.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6] Length = 210 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRI 124 +L ++ G+G A +L + + +V + I + + ++ GI K A RI Sbjct: 153 MLTAIPGIGVEKAKRLLEKFGSVYRVVNATIPE----LMRVEGIGEKQAKRI 200 >gi|321272286|gb|ADW80171.1| tail tape measure [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 806 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 17/131 (12%) Query: 81 VGARVAMGVLSR---ITATELVESIILQN-SKVIAQIPGISMKIA--SR---IMTELKGK 131 +G + +S ++A E + +A I GI K+A R I+ L Sbjct: 252 IGFTTTVAKMSTAFDMSAEE------AGDSIAKLANIYGI--KVADMERAGNIINHLSDN 303 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 + + + + + ++ V + ++A ++LG +A TA+ ++L K + Sbjct: 304 SAAKAGDMVKALAVVGGSAKQFGLDIKETSSLVNAFISLGKQPAKAATAINALLSKLQTA 363 Query: 192 ADDSQIIRLAL 202 + + AL Sbjct: 364 EGQGKEFKAAL 374 >gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2] gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2] Length = 858 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 +G A +L + VE+++ N + + ++ G+ A RI Sbjct: 809 IGPVTARTLLEAFGS---VEAVMTANEEDLKEVRGVGQVTAERI 849 >gi|239940412|ref|ZP_04692349.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998] gi|239986893|ref|ZP_04707557.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 11379] gi|291443843|ref|ZP_06583233.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998] gi|291346790|gb|EFE73694.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998] Length = 686 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 L V G+G ++ + +L ++ I + I ++PGI + A Sbjct: 610 LDDVSGLGETRKQALIKHFGSVKKLRQATIDE----ICEVPGIGRRTAE 654 >gi|257069943|ref|YP_003156198.1| DNA replication and repair protein RecR [Brachybacterium faecium DSM 4810] gi|256560761|gb|ACU86608.1| DNA replication and repair protein RecR [Brachybacterium faecium DSM 4810] Length = 197 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 13/29 (44%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKG 130 I+ + ++PGI K A RI L Sbjct: 5 IVQDLIDELGRLPGIGPKSAQRIAFHLLD 33 >gi|186684245|ref|YP_001867441.1| recombination protein RecR [Nostoc punctiforme PCC 73102] gi|186466697|gb|ACC82498.1| recombination protein RecR [Nostoc punctiforme PCC 73102] Length = 247 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 107 SKVIAQIPGISMKIASRIMT 126 + + ++PG+ K A R+ Sbjct: 60 IEQLQRLPGVGPKSAQRLAL 79 >gi|327480434|gb|AEA83744.1| recombination protein RecR [Pseudomonas stutzeri DSM 4166] Length = 199 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%) Query: 107 SKVIAQIPGISMKIASRIMTEL--KGKAISL 135 + +PG+ K A R+ +L + ++ L Sbjct: 11 IDALRILPGVGQKTAQRMALQLLERDRSGGL 41 >gi|312878652|ref|ZP_07738499.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311794572|gb|EFR11054.1| transposase IS116/IS110/IS902 family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 243 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 104 LQNSKVIAQIPGISMKIASRIMTE 127 ++ + + IPG+ + A I+ E Sbjct: 83 EEDMERLDTIPGVGRRTAEHIIAE 106 >gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR] gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR] Length = 670 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 25/140 (17%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA---------- 121 F+ ++ VG A + + + ++I S+ + ++P + +A Sbjct: 512 FIYALGIREVGEATANALANHFKNLD---ALIAAESEQLQEVPDVGAVVAKHIVAFFHEA 568 Query: 122 --SRIMTELKGKA----ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 +++ EL+ +S VQ D N A SAL LG Sbjct: 569 HNQQVVAELREFISWPEGEEASSVQSDRLSGNTYVITGTLSTMTRDEAKSALEALG---- 624 Query: 176 QATTAVVSVLKKEKNIADDS 195 SV KK + Sbjct: 625 --AKVASSVSKKTTALVAGE 642 >gi|325119489|emb|CBZ55042.1| putative nucleoporin FG repeat-containing protein [Neospora caninum Liverpool] Length = 410 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Query: 96 TELVESIILQNSKVIAQIPGI--SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153 L E I+ + + Q G+ +A R+ E A S + N Sbjct: 289 PGLAEQIVTSQLQQLQQFHGLVREKAVAERLAFE----APPPSVDFLRPFLAANSLSLQS 344 Query: 154 CSMPSFAINAISALVNLG 171 + + ++A+ AL +LG Sbjct: 345 APVVAPQLDAVQALSSLG 362 >gi|330815904|ref|YP_004359609.1| hypothetical protein bgla_1g09710 [Burkholderia gladioli BSR3] gi|327368297|gb|AEA59653.1| hypothetical protein bgla_1g09710 [Burkholderia gladioli BSR3] Length = 111 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ-IPGISMKIASRIMTE 127 L+ ++G+G A ++ A +++ +A+ + GI K R++ E Sbjct: 30 EALRGIKGIGPAKARAIVEEREAHGPY-----KDTADLARRVSGIGEKSVERLVAE 80 >gi|153207802|ref|ZP_01946402.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii 'MSU Goat Q177'] gi|161830444|ref|YP_001596464.1| helix-hairpin-helix repeat-containing competence protein ComEA [Coxiella burnetii RSA 331] gi|165923887|ref|ZP_02219719.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii RSA 334] gi|120576354|gb|EAX32978.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii 'MSU Goat Q177'] gi|161762311|gb|ABX77953.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii RSA 331] gi|165916672|gb|EDR35276.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii RSA 334] Length = 113 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 LL +++G+G + A +++ +SI ++ +PGIS K +R++ Sbjct: 56 LLTTLKGIGVKKAKAIIAYRKKEGNFKSIE-----ALSSVPGISQKTVARLI 102 >gi|225868912|ref|YP_002744860.1| competence protein [Streptococcus equi subsp. zooepidemicus] gi|225702188|emb|CAW99904.1| putative competence protein [Streptococcus equi subsp. zooepidemicus] Length = 226 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 7/51 (13%) Query: 75 LQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQS+ G+GA+ A ++ + L++ + ++ GI K ++ Sbjct: 175 LQSIPGIGAKRAQDIIDVRESLGGFKS---LED---LRKVSGIGAKTLEKL 219 >gi|319790154|ref|YP_004151787.1| excinuclease ABC, C subunit [Thermovibrio ammonificans HB-1] gi|317114656|gb|ADU97146.1| excinuclease ABC, C subunit [Thermovibrio ammonificans HB-1] Length = 586 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 40/151 (26%) Query: 6 KGNIEGLYEDYVLIDVQGVCYIIYCPIRT-------LSCLGKIGDFCTLFVETHMRQDQI 58 +G + D V++D G+ + ++ ++ + + Sbjct: 438 RGEV--KEPDLVIVD-GGIG-QLNVALKVRDTFGLGFRVFSIAKREEVVYTDLGEVVETK 493 Query: 59 R---LFGFLS-----------------DLDRQWFMLLQSVQGVGARVAMGVLSRITAT-- 96 R LF F + D+ L SV+G+G + ++ ++ Sbjct: 494 RFPHLFRFFTSIRDEAHRFALSYNRKLRTDKMLHSFLSSVKGIGPKR-RALIEKLYPDLS 552 Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTE 127 EL ++ + GI +K+A R + E Sbjct: 553 ELA-AVSPSELAKL----GIPLKVA-REVVE 577 >gi|307243483|ref|ZP_07525634.1| comEA protein [Peptostreptococcus stomatis DSM 17678] gi|306493127|gb|EFM65129.1| comEA protein [Peptostreptococcus stomatis DSM 17678] Length = 261 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 I L + K + IPG+ A +I+ + + K +++ Sbjct: 202 INLADEKSLESIPGVGPATAKKIV-DYRTKQGKFNAI 237 >gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter uraniireducens Rf4] gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4] Length = 577 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 9/59 (15%) Query: 75 LQSVQGVGARVAMGVL---SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 L +V G+G + A + + +L + +A IPGI K I LKG Sbjct: 92 LLAVPGLGPKTARQIFEQRHIASIDDLERAAREH---KLAGIPGIQKKTEENI---LKG 144 >gi|296333282|ref|ZP_06875735.1| membrane bound high-affinity DNA-binding receptor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675214|ref|YP_003866886.1| membrane bound high-affinity DNA-binding receptor [Bacillus subtilis subsp. spizizenii str. W23] gi|296149480|gb|EFG90376.1| membrane bound high-affinity DNA-binding receptor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413458|gb|ADM38577.1| membrane bound high-affinity DNA-binding receptor [Bacillus subtilis subsp. spizizenii str. W23] Length = 205 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ + GVG A +++ ++I I ++ GI K +I Sbjct: 152 EELQGISGVGPSKAEAIIAYREENGRFQTIED-----ITKVSGIGEKSFEKI 198 >gi|120603218|ref|YP_967618.1| excinuclease ABC subunit C [Desulfovibrio vulgaris DP4] gi|120563447|gb|ABM29191.1| Excinuclease ABC subunit C [Desulfovibrio vulgaris DP4] Length = 688 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 LQ V+G+G A + R + ++++ + +A +PG+ Sbjct: 616 ELQRVEGIGPATARALWERFDS---LQAMAEAGVEGLAAVPGVG 656 >gi|24373578|ref|NP_717621.1| recombination protein RecR [Shewanella oneidensis MR-1] gi|38372488|sp|Q8EFF8|RECR_SHEON RecName: Full=Recombination protein recR gi|24347900|gb|AAN55065.1|AE015643_12 recombination protein RecR [Shewanella oneidensis MR-1] Length = 199 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 + + +PG+ K A R+ +L + + +S + H S ++ + Sbjct: 11 IQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLAAALSSAMSDIGHCQSCRTYTEETL 68 >gi|126725231|ref|ZP_01741074.1| 5-oxoprolinase (ATP-hydrolyzing) [Rhodobacterales bacterium HTCC2150] gi|126706395|gb|EBA05485.1| 5-oxoprolinase (ATP-hydrolyzing) [Rhodobacterales bacterium HTCC2150] Length = 1207 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMG 88 FGF+S +R F+ L SV+G+G A Sbjct: 587 FGFVSP-ERGLFIDLISVEGIGGSGAAA 613 >gi|159900526|ref|YP_001546773.1| phosphotransferase domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159893565|gb|ABX06645.1| PHP domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 578 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + + V +G + A + +L +A+I G K A+++++ L Sbjct: 92 LQILRVPEIGPKTAARLFRDEGIQDLEALFAAAQDGRLAKIKGFGAKSAAKVLSAL 147 >gi|262199205|ref|YP_003270414.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365] gi|262082552|gb|ACY18521.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365] Length = 751 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 47/126 (37%), Gaps = 12/126 (9%) Query: 76 QSVQGVGARVAMGVLSRITATELVE--SIILQNSKVIAQIPGISMKIASRI---MTELKG 130 ++ G+G +VA +L + + + ++ ++ + + + A + + + Sbjct: 447 MNIDGLGEKVAQALLDTGLVSNVADLFALSKEDLLTLERF---GEQSAQNLVDAIARARD 503 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-NLGYGQDQATTAVVSVLKKEK 189 A + ++ + A + ++A+ ALV + A A + V ++ Sbjct: 504 SATFSRLLAALGVAHIGGVAARAIAAHYPDMDALLALVDS---TAPSAEAAALEVTAEDG 560 Query: 190 NIADDS 195 D S Sbjct: 561 AGEDAS 566 >gi|126465173|ref|YP_001040282.1| glycerophosphoryl diester phosphodiesterase [Staphylothermus marinus F1] gi|126013996|gb|ABN69374.1| glycerophosphoryl diester phosphodiesterase [Staphylothermus marinus F1] Length = 231 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 21/98 (21%) Query: 24 VCYII---YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 + Y I + K+ + L+ + ++L GF + L +V+ Sbjct: 145 IGYNIGSLEAAMNAF----KLHEKLKLY-SINPPIQGLQLIGFEKFRE-----YLVNVKN 194 Query: 81 VGARVAM------GVLSRITATELVESIILQNSKVIAQ 112 VGA+ + +L + EL++ +I N + + Sbjct: 195 VGAKTVLWTVDDPSLLKGL--EELIDVVITNNVEAFTK 230 >gi|158522386|ref|YP_001530256.1| excinuclease ABC, C subunit [Desulfococcus oleovorans Hxd3] gi|158511212|gb|ABW68179.1| excinuclease ABC, C subunit [Desulfococcus oleovorans Hxd3] Length = 626 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 12/84 (14%) Query: 47 LFVETHMRQDQIRLFGFL---SDLDRQ---WFMLLQSVQGVGARVAMGVLSRITATELVE 100 LF+ +R + R F +R+ L + G+G + +L R E V Sbjct: 535 LFLLEEIRDEAHR---FAIDYQRKERKRISLRSALDDIPGIGPQRKRMLLDRFGTVEGVR 591 Query: 101 SIILQNSKVIAQIPGISMKIASRI 124 + +++ + PGI+ +A +I Sbjct: 592 AASVEDLAAL---PGITGSMAGQI 612 >gi|110669531|ref|YP_659342.1| DNA mismatch repair protein MutS homolog, MutS3 [Haloquadratum walsbyi DSM 16790] gi|109627278|emb|CAJ53768.1| DNA mismatch repair protein MutS homolog, MutS3 [Haloquadratum walsbyi DSM 16790] Length = 704 Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 5/46 (10%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI--SMKIA 121 + GVG + A + A ++ + +++ P I A Sbjct: 6 IPGVGPKTAAALEELDDAE---RALKDGDVAALSRSPEISDGRATA 48 >gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162] gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162] Length = 688 Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 24/121 (19%) Query: 20 DVQGVCYIIYCPIRTLSCLGKIGD----------FCTLFVE--THMRQDQIRLFGFLSDL 67 D++G+ Y + L GD LF + + RL L++L Sbjct: 457 DIEGLGYEAATALTASPVLHNEGDVFSLTEADLTQVPLFTNDGGALSANAQRL---LTNL 513 Query: 68 D----RQWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 D + + +L S++ VG A + + + E +I + +A++ G+ IA Sbjct: 514 DVAKTKPLWRVLVALSIRHVGPSAARALAQELGSLE---AIAAADVDQLAEVDGVGRVIA 570 Query: 122 S 122 Sbjct: 571 E 571 >gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171] Length = 900 Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 15/124 (12%) Query: 70 QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126 + +L S++ +G A + S + E +I ++ I GI +IA ++ Sbjct: 730 DLWRVLVALSIRRLGPPTARLIASAFGSLE---AIEQAGVDELSAIDGIGPEIAESVVNW 786 Query: 127 -----ELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATT 179 E + + +L + + E + + + ++ +L G+ +D A Sbjct: 787 FAAAREPRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTG--SLEGFSRDSAKE 844 Query: 180 AVVS 183 A++ Sbjct: 845 AIIE 848 >gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] Length = 896 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 15/124 (12%) Query: 70 QWFMLL--QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT- 126 + +L S++ +G A + S + E +I ++ I GI +IA ++ Sbjct: 726 DLWRVLVALSIRRLGPPTARLIASAFGSLE---AIEQAGVDELSAIDGIGPEIAESVVNW 782 Query: 127 -----ELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATT 179 E + + +L + + E + + + ++ +L G+ +D A Sbjct: 783 FAAAREPRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTG--SLEGFSRDSAKE 840 Query: 180 AVVS 183 A++ Sbjct: 841 AIIE 844 >gi|239905341|ref|YP_002952080.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1] gi|239795205|dbj|BAH74194.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1] Length = 739 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 11/80 (13%) Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167 +V+A +PGI K A+RI ++ D + + K A + I + AL Sbjct: 414 RVLAFVPGIGPKTATRI----------FEAIRAGDRAMLGKMAAKSGEFKAL-IEFLDAL 462 Query: 168 VNLGYGQDQATTAVVSVLKK 187 L + + V+ Sbjct: 463 RALPPSPQELLSKVIEAYAP 482 >gi|299822871|ref|ZP_07054757.1| competence protein CelA [Listeria grayi DSM 20601] gi|299816400|gb|EFI83638.1| competence protein CelA [Listeria grayi DSM 20601] Length = 198 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ + GVG A +L +T L + + + I G K R+ Sbjct: 145 QELQGIPGVGPAKAQAILEYRESTGLFQKVED-----LKNISGFGEKTIERL 191 >gi|225165705|ref|ZP_03727504.1| PHP domain protein [Opitutaceae bacterium TAV2] gi|224800055|gb|EEG18485.1| PHP domain protein [Opitutaceae bacterium TAV2] Length = 615 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 6/97 (6%) Query: 73 MLLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 + + V G+G + + L L + + PG K +I ++ Sbjct: 100 ITMLEVPGLGPKKIKAIHDQLGIDNLDTLAAACADGRVAAL---PGFGEKSQQKIAEGIR 156 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 +A + D + + A +A Sbjct: 157 NRAAYARRHLWWDAHAIAQPIVAHLRTLPHVERAEAA 193 >gi|13541687|ref|NP_111375.1| family X DNA polymerase [Thermoplasma volcanium GSS1] gi|14325087|dbj|BAB60012.1| DNA-dependent DNA polymerase family X [Thermoplasma volcanium GSS1] Length = 516 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 72 FMLLQSVQGVGARVAMGV----LSRITATELVESIILQNSKVIAQIPGISMKIASRIM-- 125 F+ L ++G+G + + V L EL +I+ + IPG K ++++ Sbjct: 95 FISLMKIEGLGPKK-LAVLYQALGITNVEELRNAILNHKVRG---IPGFGEKSENQLLKN 150 Query: 126 TELKGKAIS 134 E+ + Sbjct: 151 IEMAERVSE 159 >gi|320546389|ref|ZP_08040704.1| competence protein CelA [Streptococcus equinus ATCC 9812] gi|320448774|gb|EFW89502.1| competence protein CelA [Streptococcus equinus ATCC 9812] Length = 226 Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 LQ++ G+GA+ A ++ S+ + + GI K ++ E Sbjct: 173 EELQTISGIGAKRAQDIIDYRDNNGGFSSVDD-----LKNVSGIGEKTLEKLKAE 222 >gi|224823841|ref|ZP_03696950.1| competence protein ComEA helix-hairpin-helix repeat protein [Lutiella nitroferrum 2002] gi|224604296|gb|EEG10470.1| competence protein ComEA helix-hairpin-helix repeat protein [Lutiella nitroferrum 2002] Length = 119 Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 5/52 (9%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+S+ G+G A ++ T +++ + +PGI K ++ Sbjct: 30 QELESLNGIGPAKAKAIMDYRTKQGPFKTVDE-----LKNVPGIGDKTLEKL 76 >gi|313680568|ref|YP_004058307.1| php domain protein [Oceanithermus profundus DSM 14977] gi|313153283|gb|ADR37134.1| PHP domain protein [Oceanithermus profundus DSM 14977] Length = 579 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELV---ESIILQNSKVIAQIPGISMKIASRIM--TE 127 + + V GVG + A + + L E++ + ++PG K +R++ E Sbjct: 97 LEVMRVPGVGPKTAKLLYDELGVDSLAAFKEALESG---RVLELPGFGEKKRARLLHNLE 153 Query: 128 L 128 L Sbjct: 154 L 154 >gi|313124830|ref|YP_004035094.1| DNA mismatch repair protein, muts family [Halogeometricum borinquense DSM 11551] gi|312291195|gb|ADQ65655.1| DNA mismatch repair protein, MutS family [Halogeometricum borinquense DSM 11551] Length = 662 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + GVG + A LS + E ++ + +A+ PG Sbjct: 6 IPGVGEKTAEA-LSELDDAE--RALADGDVAALARAPG 40 >gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58] gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58] Length = 928 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Query: 95 ATEL--VESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152 +L V +++ + + IPGI K A++++TE G +L + S + + Sbjct: 174 PEQLGDVLALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALDAAPSMKKSKMQENLIA 233 Query: 153 ICSMPSFAINAISALVNL 170 M + LV L Sbjct: 234 HADMARLSRR----LVAL 247 >gi|83589125|ref|YP_429134.1| excinuclease ABC subunit C [Moorella thermoacetica ATCC 39073] gi|119367672|sp|Q2RLU8|UVRC_MOOTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|83572039|gb|ABC18591.1| Excinuclease ABC subunit C [Moorella thermoacetica ATCC 39073] Length = 613 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 42/145 (28%) Query: 14 EDYVLID--------------VQGVCYIIYCPIRTLSC----LGKIG---------DFCT 46 D+VLID GV Y P L+ L ++G + Sbjct: 462 PDFVLIDGGLGQLHAARETMEAMGVGY---IPTFGLAKEEELLFRVGTSEPIRLPRESKA 518 Query: 47 LFVETHMRQDQIRLFGFL-----SDLDRQWFM-LLQSVQGVGARVAMGVLSRITATELVE 100 L + H+R + R F ++ + +L + GVG + +L + V Sbjct: 519 LQILQHLRDEVHR---FAITYHRQKREKTAYRSVLDDIPGVGPKRKKALLRHFGS---VA 572 Query: 101 SIILQNSKVIAQIPGISMKIASRIM 125 +I + + + G++ +A+RI+ Sbjct: 573 AISKATLEDLLAVEGMNRTVAARIL 597 >gi|46201468|ref|ZP_00208112.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 221 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Query: 2 IGKIKGNIE-GLYEDYVLIDVQGVCYIIYC 30 I +++G +E +++ VQGV Y I Sbjct: 192 ISRLRGKLERSRKTPTLILTVQGVGYRINL 221 >gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] Length = 928 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Query: 95 ATEL--VESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152 +L V +++ + + IPGI K A++++TE G +L + S + + Sbjct: 174 PEQLGDVLALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALEAAPSMKKSKMQENLIA 233 Query: 153 ICSMPSFAINAISALVNL 170 M + LV L Sbjct: 234 HADMARLSRR----LVAL 247 >gi|260429825|ref|ZP_05783801.1| aliphatic sulfonates import ATP-binding protein SsuB 2 [Citreicella sp. SE45] gi|260419308|gb|EEX12562.1| aliphatic sulfonates import ATP-binding protein SsuB 2 [Citreicella sp. SE45] Length = 197 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 19/116 (16%) Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156 ++ S+ + + GI RI+ L + S ++M+ V +E + Sbjct: 16 DVHFSVSRGETVALLGPSGIGKSTLLRIVAGL-DRDFDGSVQRPEEMAMVFQEPTLLPWR 74 Query: 157 PSFAINAISALVNL-----GYGQDQATTAVVSVLKKEKNIA-----DDSQIIRLAL 202 SAL NL G +A A+ V K + A Q RLAL Sbjct: 75 --------SALQNLLLVHPGLTPREARAALDRVGLKGREDAFPRALSLGQQRRLAL 122 >gi|256422507|ref|YP_003123160.1| ABC transporter [Chitinophaga pinensis DSM 2588] gi|256037415|gb|ACU60959.1| ABC transporter related [Chitinophaga pinensis DSM 2588] Length = 529 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 22/117 (18%) Query: 96 TELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS 155 +L + + + I G+ RI+ GK + + + Q Sbjct: 20 QDLNLILNDGDKAALVGINGVGKSTLLRII---SGKLQPTAGEIISEEQPWYVPQHLGDY 76 Query: 156 MPSFAINAISALVNLGYGQDQAT-TAVVSVLKKEKNIA---------DDSQIIRLAL 202 A+ A +A A+ ++L + + D ++ AL Sbjct: 77 DTWSVARALGA---------EARLKALQAILAGDTDPEHFTVLGDNWDIENRVKQAL 124 >gi|160902691|ref|YP_001568272.1| helix-hairpin-helix repeat-containing competence protein ComEA [Petrotoga mobilis SJ95] gi|160360335|gb|ABX31949.1| competence protein ComEA helix-hairpin-helix repeat protein [Petrotoga mobilis SJ95] Length = 171 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV-------IAQIP 114 GF D + +V G+G + + I +E++ I+ + + + +P Sbjct: 74 GFREIED------IMNVSGIGEKTFSNIKDYIYLSEVIYEIVDEKININEASSEELESLP 127 Query: 115 GISMKIASRIM 125 GI A +I+ Sbjct: 128 GIGKVSAQKII 138 >gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b] gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b] Length = 938 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 16/108 (14%) Query: 25 CYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLL----QSVQ 79 Y I TL+C + +G T+ +D ++L G + F + V+ Sbjct: 119 GYEADDIIATLACQARDLGGRVTII---SSDKDLMQLVG----DGVEMFDAMKNRRIDVE 171 Query: 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 GV + +G + V+++ + + PGI +K A+ ++ E Sbjct: 172 GVEEKFGVGPDRVVD----VQALAGDSVDNVPGAPGIGIKTAALLINE 215 >gi|86158982|ref|YP_465767.1| PHP-like phosphoesterase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775493|gb|ABC82330.1| phosphoesterase, PHP-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 592 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 6/56 (10%) Query: 73 MLLQSVQGVGARV--AM-GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 + L V +G + A+ L + EL + + + G K RI+ Sbjct: 92 LELLRVPDLGPKKIAALHAALGVASVAELEAACREG---RVRGVKGFGEKTEQRIL 144 >gi|46579214|ref|YP_010022.1| excinuclease ABC subunit C [Desulfovibrio vulgaris str. Hildenborough] gi|46448627|gb|AAS95281.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris str. Hildenborough] Length = 702 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 LQ V+G+G A + R + ++++ + +A +PG+ Sbjct: 630 ELQRVEGIGPATARALWERFDS---LQAMADAGVEGLAAVPGVG 670 >gi|84502540|ref|ZP_01000676.1| probable iron uptake ABC transporter periplasmic solute-binding protein [Oceanicola batsensis HTCC2597] gi|84389352|gb|EAQ02149.1| probable iron uptake ABC transporter periplasmic solute-binding protein [Oceanicola batsensis HTCC2597] Length = 335 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 17/93 (18%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 GV Y + L + F++ M D I L+ Q + L ++ GV Sbjct: 242 GGVGYELEASG--LMASSDNKEAAKAFLDWTMSDDAIDLY--------QQYKALITIPGV 291 Query: 82 GARVAM------GVLSRITAT-ELVESIILQNS 107 A A +S I A + VE+ Q++ Sbjct: 292 DASQAAEDAGLPADISTILADIDFVEAAGNQDA 324 >gi|223044134|ref|ZP_03614173.1| preprotein translocase, YajC subunit [Staphylococcus capitis SK14] gi|314933802|ref|ZP_07841167.1| preprotein translocase, YajC subunit [Staphylococcus caprae C87] gi|222442528|gb|EEE48634.1| preprotein translocase, YajC subunit [Staphylococcus capitis SK14] gi|313653952|gb|EFS17709.1| preprotein translocase, YajC subunit [Staphylococcus caprae C87] Length = 87 Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 2 IGKIKGNIEGLYEDYVLIDVQG 23 IG IKG ++ + E V+I V G Sbjct: 48 IGGIKGTVKSVDETTVVITVNG 69 >gi|194017660|ref|ZP_03056270.1| ComE operon protein 1 [Bacillus pumilus ATCC 7061] gi|194010560|gb|EDW20132.1| ComE operon protein 1 [Bacillus pumilus ATCC 7061] Length = 209 Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Query: 74 LLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 LQ++ G+G A +++ R E + ++ + I G K R+ EL Sbjct: 157 ELQTINGIGPAKAEAIITYREEHGEFQQI---ED---LRNISGFGEKTIERLKNEL 206 >gi|77407217|ref|ZP_00784185.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B] gi|77174172|gb|EAO77073.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B] Length = 46 Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ +L GK + S +++ +++ A+ AL+ LGY + Sbjct: 1 MIPDLSGKFVEASGESATSRKVSSEQNSNL-------EEAMEALLALGYKATE 46 >gi|269795321|ref|YP_003314776.1| multidrug ABC transporter ATPase/permease [Sanguibacter keddieii DSM 10542] gi|269097506|gb|ACZ21942.1| ABC-type multidrug transport system, ATPase and permease component [Sanguibacter keddieii DSM 10542] Length = 634 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 32/148 (21%) Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGV----LSRITATELVESIILQNSKVIAQIPGI 116 +G D R++ + +G ++AM + T L +I+ ++ I G Sbjct: 240 YGRPDDESRRFARDASRARDIGVKLAMYSTYFRVGLTTVAALAVAIVYG-VGGLSAISG- 297 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 VV + + + + ++ + ++ ++ALV+ + + Sbjct: 298 ----------------GLTVGVVVALTAYLGRLYGPLTALSNVQVDVMTALVS--FER-- 337 Query: 177 ATTAVVSVLKKEKNIADDSQI--IRLAL 202 V+ VL E ++ D +R AL Sbjct: 338 ----VLEVLDLEPSVTDAEDATDLRDAL 361 >gi|325283672|ref|YP_004256213.1| PHP domain-containing protein [Deinococcus proteolyticus MRP] gi|324315481|gb|ADY26596.1| PHP domain protein [Deinococcus proteolyticus MRP] Length = 511 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 11/92 (11%) Query: 75 LQSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRI------MT 126 L +V+G+G + + + L ++ ++A + G K A + + Sbjct: 97 LFAVRGLGPKKVRALWDAGIDSVPALRDAAQSG---ILAAVKGFGAKGAQTLGQAAQFVL 153 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPS 158 + + + + + + + QA + S Sbjct: 154 DAQDRFLLSQATLAAEAVAGALAQAGFGTEFS 185 >gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836] gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836] Length = 901 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 17/79 (21%) Query: 62 GF---LSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATEL-------------VESIIL 104 GF +S DR F L+ +V + + + ++R+ + + +++ Sbjct: 138 GFEVLISSGDRDAFQLVSDNVTVLYPKRGVSEIARMDPAAVEEKYGVTPRLYPDLAALVG 197 Query: 105 QNSKVIAQIPGISMKIASR 123 + S + +PG+ K A++ Sbjct: 198 EQSDNLPGVPGVGPKTAAK 216 >gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164] gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164] Length = 682 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 17/114 (14%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------ 125 F+ ++GVG A + + E ++ + + ++P + A I Sbjct: 521 FIYALGIRGVGETTARMLANSFQTLE---ALQQADVDSLKKVPDVGDITAEWIYDFFRAE 577 Query: 126 --TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVNLG 171 E+ + ++ ++ + + + + A L LG Sbjct: 578 HNLEVIDRLLAAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQMLQALG 631 >gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82] gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82] Length = 678 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 17/114 (14%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM------ 125 F+ ++GVG A + + E ++ + + ++P + A I Sbjct: 517 FIYALGIRGVGETTARMLANSFQTLE---ALQQADVDSLKKVPDVGDITAEWIYDFFRAE 573 Query: 126 --TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------AISALVNLG 171 E+ + ++ ++ + + + + A L LG Sbjct: 574 HNLEVIDRLLAAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQMLQALG 627 >gi|289580814|ref|YP_003479280.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099] gi|289530367|gb|ADD04718.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099] Length = 586 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 10/94 (10%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 + ++GVG + A + L T +L ++ I ++ G K I + Sbjct: 99 ITRIEGVGPKTAGKLYRELGIETLDDLEDAAEAGE---IQEVKGFGPKTEENI----RDN 151 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 V Q+ + + A +++A+ Sbjct: 152 IEFAREVGQRQLLGEARPLADDVLAFLESLDAVE 185 >gi|55379328|ref|YP_137178.1| Hef nuclease [Haloarcula marismortui ATCC 43049] gi|55232053|gb|AAV47472.1| ATP-dependent RNA helicase homolog eIF-4A [Haloarcula marismortui ATCC 43049] Length = 852 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%) Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 VG A +L + VE+++ + + ++ GI A RI Sbjct: 802 VGPVTARTLLESFGS---VEAVMTADKDDLLEVSGIGDVTADRI 842 >gi|308048900|ref|YP_003912466.1| recombination protein RecR [Ferrimonas balearica DSM 9799] gi|307631090|gb|ADN75392.1| recombination protein RecR [Ferrimonas balearica DSM 9799] Length = 199 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%) Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAH 152 K + +PG+ + A R+ +L + + + + +S + H Sbjct: 11 IKALQCLPGVGPRSAQRMTFQLLERDRVAGTRLGEALSRAMSDVGH 56 >gi|119370542|sp|Q72DX8|UVRC_DESVH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|311233046|gb|ADP85900.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris RCH1] Length = 688 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 LQ V+G+G A + R + ++++ + +A +PG+ Sbjct: 616 ELQRVEGIGPATARALWERFDS---LQAMADAGVEGLAAVPGVG 656 >gi|300711869|ref|YP_003737683.1| PHP domain protein [Halalkalicoccus jeotgali B3] gi|299125552|gb|ADJ15891.1| PHP domain protein [Halalkalicoccus jeotgali B3] Length = 580 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELV--ESIILQNSKVIAQIPGISMKIASRIM--TE 127 L SV+GVG + + + L E++ + I +I G K I+ E Sbjct: 92 MDELTSVEGVGPKTVGTLYEALGVENLADLETVAS--AGEIQEIKGFGPKTEQNILSGLE 149 Query: 128 LKGKAIS 134 KA Sbjct: 150 FARKASE 156 >gi|324990586|gb|EGC22522.1| M20/M25/M40 family peptidase [Streptococcus sanguinis SK353] Length = 445 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG-QDQATT 179 A + + +LK + ++ + N A + ++ L LGY + A Sbjct: 182 AEKGLLQLKLEGPGSDTLELEAGQAFNVVPAKASYSGDLLESVVAGLEGLGYEYERTAEE 241 Query: 180 A-VVSVLKKEKNIA-DDSQIIRLA--LRAISC 207 V+ + K K+ A + IIRLA L+ + Sbjct: 242 VTVIGLPKHAKDAAQGVNGIIRLAKVLQPLDS 273 >gi|307151592|ref|YP_003886976.1| recombination protein RecR [Cyanothece sp. PCC 7822] gi|306981820|gb|ADN13701.1| recombination protein RecR [Cyanothece sp. PCC 7822] Length = 185 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 5/16 (31%), Positives = 9/16 (56%) Query: 111 AQIPGISMKIASRIMT 126 ++PG+ K A R+ Sbjct: 2 QRLPGVGPKTAQRLAL 17 >gi|254500672|ref|ZP_05112823.1| Glycosyl hydrolase family 9 [Labrenzia alexandrii DFL-11] gi|222436743|gb|EEE43422.1| Glycosyl hydrolase family 9 [Labrenzia alexandrii DFL-11] Length = 557 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%) Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVL 185 E GK + + + +A + + +F +A++ LV GY + + L Sbjct: 242 LETYGKPDLAAVYLGSAFRAWDAAEAGLSDIDAFYTDAVAGLVAGGYSNSEGWPEIRLKL 301 Query: 186 KKEKNI 191 K+E Sbjct: 302 KEEAET 307 >gi|258593484|emb|CBE69823.1| PHP C-terminal domain protein [NC10 bacterium 'Dutch sediment'] Length = 577 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 20/88 (22%) Query: 75 LQSVQGVGARVAMGVLSRITA------TELVESIILQNSKVIAQIPGISMKIA------- 121 L + G+G +A + I EL +I + IPG+ K Sbjct: 53 LAEIAGIGKDLAAKIQQAIETGRIEYLEELRTAIPRG-VVELMAIPGVGPKTTKLLFQQL 111 Query: 122 -----SRI-MTELKGKAISLSSVVQQDM 143 R+ L+GK + L + Q+ + Sbjct: 112 QVDSVERLETLALQGKLLGLPGIKQKTV 139 >gi|169831315|ref|YP_001717297.1| phosphotransferase domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638159|gb|ACA59665.1| PHP C-terminal domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 578 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TEL 128 L +V G+G R A + + + L E L + +A++ G+ K ++I+ EL Sbjct: 92 QLLTVPGIGPRTARILYEELQISGLDELERLGRAGRLAELRGLGEKTQNKILSGLEL 148 >gi|111225216|ref|YP_716010.1| DNA ligase [Frankia alni ACN14a] gi|122953782|sp|Q0RDH8|DNLJ_FRAAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|111152748|emb|CAJ64491.1| DNA ligase [Frankia alni ACN14a] Length = 771 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 33/184 (17%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDL--------D-- 68 +D+ G+ Y + +G IGD + + L GF + Sbjct: 500 LDIDGLGYETAIALLEADRVGDIGD-----IFHLTPESFEGLRGFGQKKIDQILRGVEAA 554 Query: 69 --RQWFMLL--QSVQGVGARVAMGVLSRITATELVE--SIILQNSKVIAQIPGISMKIAS 122 R + LL S++ VG A + A EL +I ++ +A + G+ KIAS Sbjct: 555 RHRPLWRLLVGLSIRHVGPTAARAL-----ARELRSLDAIAAAPAEQLAAVEGVGPKIAS 609 Query: 123 RIM---TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQAT 178 ++ + + + I ++ + S + A I+ L G+ +D AT Sbjct: 610 AVVDWFADARHRDI-VARIAAGGASLADAGAAEGPRPLDGVAVVITG--TLDGWSRDSAT 666 Query: 179 TAVV 182 AV Sbjct: 667 EAVQ 670 >gi|15679414|ref|NP_276531.1| Hef nuclease [Methanothermobacter thermautotrophicus str. Delta H] gi|2622527|gb|AAB85892.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter thermautotrophicus str. Delta H] Length = 738 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA-- 121 L+ ++Q F+ ++S+ +G++ A +L + VE ++ + K + + GI K A Sbjct: 662 LTLREKQLFI-VESLPNIGSKYAERLLEAFGS---VEGVMNASEKELRSVEGIGAKRASE 717 Query: 122 -SRIM-TELKG 130 R++ E KG Sbjct: 718 IRRVIEAEFKG 728 >gi|332523820|ref|ZP_08400072.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176] gi|332315084|gb|EGJ28069.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 7/53 (13%) Query: 73 MLLQSVQGVGARVAMGVLSRITATE-LVESIILQNSKVIAQIPGISMKIASRI 124 L + G+G + A ++ + + L++ + +I GI K ++ Sbjct: 175 EDLTKIPGIGEKRAKEIIDVRESQGGFKK---LED---LLKISGIGKKTLEKL 221 >gi|111223984|ref|YP_714778.1| excinuclease ABC subunit C [Frankia alni ACN14a] gi|111151516|emb|CAJ63235.1| DNA excision repair enzyme UvrABC; UvrC subunit [Frankia alni ACN14a] Length = 802 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 14/97 (14%) Query: 38 LGKIGDFCTLFVETHMRQDQIRLFGFL---SDLDRQWFML---LQSVQGVGARVAMGVLS 91 L + + L++ +R + R F R M+ L V G+G +L Sbjct: 650 LPRTSEA--LYLLQRVRDEAHR---FAITYHRQKRSAAMVTSALDDVPGLGETRRKALLR 704 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 + + V + + Q+PGI + A+ I+T L Sbjct: 705 QFGSVAKVRAASAEEIA---QVPGIGPRTAAAILTAL 738 >gi|212550836|ref|YP_002309153.1| 30S ribosomal protein S1 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549074|dbj|BAG83742.1| 30S ribosomal protein S1 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 612 Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 15/70 (21%) Query: 2 IGKIK------GNIEGLYEDYVLIDVQGVCYI---IYCPIRTLSCLG--KIGDFCTLFVE 50 IGK+K G + + + V ID + Y + K+GD +++E Sbjct: 58 IGKVKNNEVVVGKVTAITKKEVFID---IGYKSDGV-VSASEFRYCPDLKVGDEVEVYIE 113 Query: 51 THMRQDQIRL 60 ++ L Sbjct: 114 NQEDKNGQLL 123 >gi|307105332|gb|EFN53582.1| hypothetical protein CHLNCDRAFT_53763 [Chlorella variabilis] Length = 403 Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 21/145 (14%) Query: 59 RLFG--FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 +L+G F S L SV+ GA A EL + AQ+P Sbjct: 154 QLYGSGFYSQEVAALAYDLLSVRVRGAEAATNF-----PLELYHA----ELAAGAQVP-- 202 Query: 117 SMKIASRIMTELK--GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG-YG 173 +++T L+ GKA++ Q + + + + AIS +LG + Sbjct: 203 ----LEQLVTHLRAQGKALARIDACQGAAASLEPWELQARGCAAGLSEAISGQPSLGLFA 258 Query: 174 -QDQATTAVVSVLKKEKNIADDSQI 197 + +A AV L +A + Sbjct: 259 CEAEAARAVDRGLLARDGLATAPLL 283 >gi|258652974|ref|YP_003202130.1| excinuclease ABCsubunit C [Nakamurella multipartita DSM 44233] gi|258556199|gb|ACV79141.1| excinuclease ABC, C subunit [Nakamurella multipartita DSM 44233] Length = 679 Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 L +V G+G ++ + L + + + I Q+PG+ + A Sbjct: 615 LDNVPGLGEVRRKALVRHFGSVAALRRA----DVEQILQVPGVGRRTAE 659 >gi|302550647|ref|ZP_07302989.1| excinuclease ABC, C subunit [Streptomyces viridochromogenes DSM 40736] gi|302468265|gb|EFL31358.1| excinuclease ABC, C subunit [Streptomyces viridochromogenes DSM 40736] Length = 496 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 18/93 (19%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML--LQSVQGVGARVAMGVLSR 92 L L +I D F T+ R + ++ F L V G+G +L Sbjct: 370 LYLLQRIRDEAHRFAITYQR----------TKRSKR-FRSSPLDDVPGLGDTRKQALLKH 418 Query: 93 I-TATELVESIILQNSKVIAQIPGISMKIASRI 124 + +L + I Q I ++PGI K A I Sbjct: 419 FGSLKKLRSATIDQ----ICEVPGIGRKTAETI 447 >gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977] gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus] Length = 902 Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 19/82 (23%) Query: 83 ARVAMGVLSRITATELVE------------SIILQNSK-VIAQIPGISMKIASRIMT--- 126 R + L+R T +VE + + + + IPG+ K AS+ + Sbjct: 162 PRKGVSDLTRFTPEAVVEKYGLTPSQYPDFAALRGDPSDNLPGIPGVGEKTASKWILEYG 221 Query: 127 ---ELKGKAISLSSVVQQDMSC 145 EL KA ++ V + Sbjct: 222 SLQELVDKADTVRGKVGDSLRA 243 >gi|302838945|ref|XP_002951030.1| hypothetical protein VOLCADRAFT_117717 [Volvox carteri f. nagariensis] gi|300263725|gb|EFJ47924.1| hypothetical protein VOLCADRAFT_117717 [Volvox carteri f. nagariensis] Length = 455 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 16/111 (14%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L V G+G + A+ +L+ N I + + R L+ + Sbjct: 333 LPGVNGIGPKTAVSLLASY-----------GNLAGIYRA--VGEMTPKRRAA-LQSALPA 378 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATTAVVSV 184 S + A + + A + L GY D AV+ + Sbjct: 379 -SQYTLTLARVLGTPGAPALPAGVLSEELLQARLKLNGYDNDAVQKAVLEL 428 >gi|194017065|ref|ZP_03055677.1| DNA polymerase beta [Bacillus pumilus ATCC 7061] gi|194010933|gb|EDW20503.1| DNA polymerase beta [Bacillus pumilus ATCC 7061] Length = 570 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TELK 129 L + G+G + + L A L E+ + + +A G K +I+ E Sbjct: 90 LLKLPGLGGKKIAKLYQELGVHDAQSLKEACEAEKVQALA---GFGKKTEEKILAALEEA 146 Query: 130 GKAIS 134 GK Sbjct: 147 GKQPE 151 >gi|157693277|ref|YP_001487739.1| hypothetical protein BPUM_2517 [Bacillus pumilus SAFR-032] gi|157682035|gb|ABV63179.1| DNA polymerase beta [Bacillus pumilus SAFR-032] Length = 570 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%) Query: 75 LQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM--TELK 129 L + G+G + + L A L E+ + + +A G K +I+ E Sbjct: 90 LLKLPGLGGKKIAKLYQELGVHDAQSLKEACEAEKVQALA---GFGKKTEEKILAALEEA 146 Query: 130 GKAIS 134 GK Sbjct: 147 GKQPE 151 >gi|126740462|ref|ZP_01756150.1| uroporphyrin-III C-methyltransferase [Roseobacter sp. SK209-2-6] gi|126718598|gb|EBA15312.1| uroporphyrin-III C-methyltransferase [Roseobacter sp. SK209-2-6] Length = 272 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 18/116 (15%) Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPG------ISMKIAS----RIMTELKGK 131 G ++ L+ + +A+ PG + K A R++ + Sbjct: 157 GRNTSVRFLTGHDMKGF----ADHDWAALAR-PGEVAAIYMGKKSARFVQGRLIMHGADR 211 Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINA-IS--ALVNLGYGQDQATTAVVSV 184 ++ + + + + +P+ +A +S AL LG Q+ A+ + Sbjct: 212 FTPVTVIENASRADERVLETTLDRLPADLADADLSGPALTFLGLAPRQSRAALADL 267 >gi|269837329|ref|YP_003319557.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269786592|gb|ACZ38735.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745] Length = 554 Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 13/78 (16%) Query: 64 LSDLDRQ--------WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK-----VI 110 ++R+ L +++G+G +A + + + L + + Sbjct: 34 ADAVEREPEPLEAIIAREELTAIEGIGPGLAAAITEIVQTGRYSATEELLDEVPGTLLTL 93 Query: 111 AQIPGISMKIASRIMTEL 128 IPG+ K R+ EL Sbjct: 94 LGIPGVGPKTVGRLYREL 111 >gi|220915380|ref|YP_002490684.1| Tetratricopeptide TPR_2 repeat protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953234|gb|ACL63618.1| Tetratricopeptide TPR_2 repeat protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 1256 Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 4/82 (4%) Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----LVNLGYGQDQATTAV 181 E +G ++ ++ A + SA LV L + Q A+ Sbjct: 439 LEARGALLAEATASAFATVPSAVRAAARSARRLGRTEEASARSRTLVALRFDDAQTRAAL 498 Query: 182 VSVLKKEKNIADDSQIIRLALR 203 +L ++A ++ ALR Sbjct: 499 AQILADRGDVAGARALLEEALR 520 >gi|121533599|ref|ZP_01665426.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1] gi|121307590|gb|EAX48505.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1] Length = 576 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 16/99 (16%) Query: 35 LSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ-----WFMLLQSVQGVGARVAMGV 89 L + IG T ++ ++ ++ + + R+ F L + G+G + A+ + Sbjct: 54 LQGIKGIGKTMTQHIKEYIETGRVTYY----EELREQVPPVLFE-LVKIPGLGPKKALLL 108 Query: 90 ---LSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 L + EL + K ++ G K +I+ Sbjct: 109 HEQLGINSVGELEYACRENRLKTLS---GFGDKSQDKIL 144 >gi|322388003|ref|ZP_08061610.1| competence protein CelA [Streptococcus infantis ATCC 700779] gi|321141276|gb|EFX36774.1| competence protein CelA [Streptococcus infantis ATCC 700779] Length = 213 Score = 34.2 bits (78), Expect = 9.5, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 73 MLLQSVQGVGARVAMGVLS-RITATELVESIILQNSKVIAQIPGISMKIASRI 124 L+ V+G+GA+ A ++ R + + + ++ GI K ++ Sbjct: 160 EELKQVKGLGAKRAQDIIDHRESNGKFKS------VDELKKVSGIGAKTIEKL 206 >gi|226225942|ref|YP_002760048.1| DNA polymerase X family protein [Gemmatimonas aurantiaca T-27] gi|226089133|dbj|BAH37578.1| DNA polymerase X family protein [Gemmatimonas aurantiaca T-27] Length = 592 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 9/63 (14%) Query: 73 MLLQSVQGVGARVAMGVLSRITAT---ELVESIILQNSKVIAQIPGISMKIASRI---MT 126 + + + G+G + + EL E +A +P + A RI + Sbjct: 101 LEMLRIPGLGPARIRAIHDGLDIDSVMELEEVARNG---RLAALPRFGERTAERILKGIA 157 Query: 127 ELK 129 +L+ Sbjct: 158 DLR 160 >gi|197120668|ref|YP_002132619.1| hypothetical protein AnaeK_0248 [Anaeromyxobacter sp. K] gi|196170517|gb|ACG71490.1| Tetratricopeptide TPR_2 repeat protein [Anaeromyxobacter sp. K] Length = 1256 Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 4/82 (4%) Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA----LVNLGYGQDQATTAV 181 E +G ++ ++ A + SA LV L + Q A+ Sbjct: 439 LEARGALLAEATASAFATVPSAVRAAARSARRLGRTEEASARSRTLVALRFDDAQTRAAL 498 Query: 182 VSVLKKEKNIADDSQIIRLALR 203 +L ++A ++ ALR Sbjct: 499 AQILADRGDVAGARALLEEALR 520 >gi|167827081|ref|ZP_02458552.1| DNA polymerase X family/PHP domain protein [Burkholderia pseudomallei 9] Length = 253 Score = 34.2 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 74 LLQSVQGVGARVAMGV---LSRITATELVESIILQNSKVIAQIPGISMKI----ASRIMT 126 L V G+GA+ + L T +L + + + PG K A I Sbjct: 95 ELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGL---PGFGEKTEAHIAEAIGA 151 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 L+ K+ + + A++A Sbjct: 152 RLRRKSQRF---LLSFATQYLTPLLTYLRETPGVSEAVAA 188 >gi|16800587|ref|NP_470855.1| hypothetical protein lin1519 [Listeria innocua Clip11262] gi|16413992|emb|CAC96750.1| comEA [Listeria innocua Clip11262] Length = 200 Score = 34.2 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 149 LQQVPGIGDSKATAIIEYREKEGLFQTIED-----LKNVTGIGEKTVEKL 193 >gi|302546283|ref|ZP_07298625.1| excinuclease ABC subunit C [Streptomyces hygroscopicus ATCC 53653] gi|302463901|gb|EFL26994.1| excinuclease ABC subunit C [Streptomyces himastatinicus ATCC 53653] Length = 700 Score = 34.2 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%) Query: 75 LQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIAS 122 L +V G+G +L + L + + Q I ++PG+ K A Sbjct: 615 LDAVPGLGDSRKHALLKHFGSVKRLRAATVEQ----ICEVPGVGRKTAE 659 >gi|313623714|gb|EFR93861.1| ComEA family DNA-binding protein [Listeria innocua FSL J1-023] Length = 200 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 LQ V G+G A ++ L ++I + + GI K ++ Sbjct: 149 LQQVPGIGDSKATAIIEYREKEGLFQTIED-----LKNVTGIGEKTVEKL 193 >gi|124262836|ref|YP_001023306.1| helicase-associated endonuclease for fork-structured DNA [Methylibium petroleiphilum PM1] gi|124262082|gb|ABM97071.1| helicase-associated endonuclease for fork-structured DNA [Methylibium petroleiphilum PM1] Length = 216 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 L++ + GVG A +++ + V + ++ + +A +PG+ K A ++ Sbjct: 161 LVEGLPGVGPGRAQAIIAHFGS---VHAALVATEQELAGVPGLGAKTAKKV 208 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.311 0.179 0.583 Lambda K H 0.267 0.0548 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,528,462,426 Number of Sequences: 14124377 Number of extensions: 212931570 Number of successful extensions: 924676 Number of sequences better than 10.0: 3789 Number of HSP's better than 10.0 without gapping: 4458 Number of HSP's successfully gapped in prelim test: 1359 Number of HSP's that attempted gapping in prelim test: 909004 Number of HSP's gapped (non-prelim): 7337 length of query: 207 length of database: 4,842,793,630 effective HSP length: 133 effective length of query: 74 effective length of database: 2,964,251,489 effective search space: 219354610186 effective search space used: 219354610186 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.4 bits) S2: 79 (34.6 bits)